LOCUS       DAXHNP010000001        49902 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.001, whole genome shotgun sequence.
ACCESSION   DAXHNP010000001 DAXHNP010000000
VERSION     DAXHNP010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 49902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49902
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.001"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(38..703)
                     /locus_tag="ACFM5C_000001"
     CDS             complement(38..703)
                     /locus_tag="ACFM5C_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067796.1"
                     /translation="MENIEEYALLSPEALLERLDTVLSIRIGGKGWESSMTANFAQTL
                     VEIQDSLYRVVSTVQYGDDNLKRLTADKRKQYELNFKISEGSTRVESDFKETLVRFGR
                     DMLQDMPPKIRSATLVALTTLLVGGALGYGYLEYLKQVASEGYQTERLYNAVDRLAES
                     QERITSAILKGARGADFVQIGRRSYSREDISEANRRAERVPYGAELVSDGNFTAVLSD
                     IGD"
     gene            complement(711..908)
                     /locus_tag="ACFM5C_000002"
     CDS             complement(711..908)
                     /locus_tag="ACFM5C_000002"
                     /inference="COORDINATES: protein motif:HMM:NF019096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUMOD1 domain-containing DNA-binding protein"
                     /protein_id="HFC6067797.1"
                     /translation="MKENTPPQNQKPVSILDTATGETLTFPSVQAAAKALNTPYGSIR
                     TKLDGRSNPDNLVCNRYKVLL"
     gene            complement(930..1103)
                     /locus_tag="ACFM5C_000003"
                     /pseudo
     CDS             complement(930..1103)
                     /locus_tag="ACFM5C_000003"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
     gene            complement(1311..1703)
                     /locus_tag="ACFM5C_000004"
     CDS             complement(1311..1703)
                     /locus_tag="ACFM5C_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6067798.1"
                     /translation="MAKSFNQAASELTDIFPNISLTGFDGVNYPVTVNCPMHGNVRYS
                     TFNALIKSKYGCPECAKMSKTQTPPNVGKPLLILDTTTNETLTFPSVTAAGAALGVHF
                     QQINHRLKGRTSPDNLISNRYKVLGYDR"
     gene            complement(1820..2230)
                     /locus_tag="ACFM5C_000005"
     CDS             complement(1820..2230)
                     /locus_tag="ACFM5C_000005"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6067799.1"
                     /translation="MALTFTQAVSKLTSKFPHLNLVEFNGVRYPTVIVCPIHGRVTCS
                     TFKSMLDSKSGCPKCASYGVNSHKIPEDTIDKLSKNTVLEDTVTGETLTFPSRASAAR
                     SLGINPAAITDRIKGRVHTETLLAGRYKVHICTK"
     gene            complement(2244..2627)
                     /locus_tag="ACFM5C_000006"
     CDS             complement(2244..2627)
                     /locus_tag="ACFM5C_000006"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6067800.1"
                     /translation="MPKSLSLQDVQLRFSSKFPDKTVLKFTKNYEPVTIQCPLHGSVV
                     YGNLQAAMKSSTGCPECTRNPEKPSPNAVAIRLEDTETGEIYEFASTLAASKFIGCSN
                     STLAVRLSGRTPFDRLIRYRYRLVK"
     gene            complement(3092..4390)
                     /locus_tag="ACFM5C_000007"
     CDS             complement(3092..4390)
                     /locus_tag="ACFM5C_000007"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFC6067801.1"
                     /translation="MAKNVVVIGAQWGDEGKGKIVDWLAEEAGGVVRFQGGHNAGHTL
                     VVGGKKTILRLIPSGILHESLDCFIGSGVVVSPEALLGEIDELNAAGVKNVEGRLKIA
                     PTCPLILPYHIALDQAREASRGKGKIGTTGRGIGPAYEDKVARRAIRAADLLHPEKLR
                     EKLDAILAYYNVQLQHLHNAEPVKAEDVMAVIEKVALRIAPMITDVSRVLNEKNKNGE
                     KLLFEGAQGALLDIDYGTYPFVTSSNCLAGAASAGAGVGPQMLDYVLGIVKAYTTRVG
                     SGPFPTELFDEVGAGLAERGHEFGSVTGRARRCGWFDAAALKRSIQINGISGMCITKL
                     DVMDGVETINICVGYELPDGGKTDILPCGSDAVETCKPIYETMEGWKESTFGIKNYEE
                     LPDNAKAYLKRIEEVCGAPVAIVSTGPDREETIVLHHPFA"
     gene            complement(4494..5645)
                     /locus_tag="ACFM5C_000008"
     CDS             complement(4494..5645)
                     /locus_tag="ACFM5C_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HFC6067802.1"
                     /translation="MQTWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPL
                     MEYAHSLLTHIDAGLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLLSANQGINRL
                     CYAGPVLHAQSDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLS
                     LGHIGIFRALSDAAHLDAGQSATLLALMQDKDTETVEAQVKAWKLDGMWAKAFSLLPR
                     LYGGREVLSDARGRLPDLSAVGGALGELQAVCDAFPDCEIHIDLSELRVDNYHTGLLY
                     AAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPTSERQPAVLVDAE
                     DAEAAREAVEALREQGQCVVIDYGIGHNVSEELAGRLKKTDGVWQVVKR"
     gene            5980..7359
                     /gene="norM"
                     /locus_tag="ACFM5C_000009"
     CDS             5980..7359
                     /gene="norM"
                     /locus_tag="ACFM5C_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter NorM"
                     /protein_id="HFC6067803.1"
                     /translation="MLLDLNRFSFSVFLKEVRLLTALALPMLLAQVAQVGIGFVDTVM
                     AGGAGKEDLAAVALGSSAFATVYITFMGIMAALNPMIAQLYGAGKTDEVGETGRQGIW
                     FGLFLGVFGMVLMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYA
                     SSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGLATMAVFWFSALALW
                     IYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFG
                     EDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWML
                     AVITVLSLVLFRSPLVSMYNNDPAVLSIAATVLLFAGLFQPADFTQCIASYALRGYKV
                     TKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAIALVWCLELCSR
                     EMVRSHKAV"
     gene            7537..8577
                     /gene="murB"
                     /locus_tag="ACFM5C_000010"
     CDS             7537..8577
                     /gene="murB"
                     /locus_tag="ACFM5C_000010"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFC6067804.1"
                     /translation="MQPIRYRTDLTPYNTFGLRAQARAFIALEHADGLRDIVRLPEFN
                     RDTVLWLGGGSNILLMEDYAGLVVHMENKGIREIARSDGMVLIEAQAGEIWHDFVLHA
                     VALGLNGLENLSLIPGTVGASPVQNIGAYGVEAKDVIHSVRCFDLDTETFVTLSNADC
                     RFAYRESLFKQEGKGRYVIVSVVFALKTHFVPNLGYGDLAAAVAELSAGRVPTAKDVS
                     DAVCAIRNSKLPNPNVLGNVGSFFKNPVVSAEKAATLLQRHPDMPRYPQPDGSVKLAA
                     GWLIDQCRLKGFQIGGAAVHDRQALVLVNKNNASANDVRQLAQHIKFTVFARFQVELH
                     AEPNWLPASFSL"
     gene            8589..9239
                     /locus_tag="ACFM5C_000011"
     CDS             8589..9239
                     /locus_tag="ACFM5C_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HFC6067805.1"
                     /translation="MPVTRPAKINTYTRIIDASLALFNEEGERNISTNHIAAHLGISP
                     GNLYYHFRNKDEIIVQLFKRYSEALLEYLNEAVLPSDVEDSINYMAGIYDVMWEYRFL
                     FSDVNTLLARSAELLGEHNTFTQAKVSPLLVNLLTQLNGLNIIQADQTAMNDLAVNMW
                     MITKYWFDFDSSLRGRTKLTEDSKARGVRRTLSLLRPYLLPEHREKYDRKIGNGNP"
     gene            9294..10070
                     /locus_tag="ACFM5C_000012"
     CDS             9294..10070
                     /locus_tag="ACFM5C_000012"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6067806.1"
                     /translation="MRAVPPPHISITGLGYLGLPLAQKFYQHGSRVAAIKRSLTSDDI
                     NLPIHLDTFDLGSTDAFQTALWRHHADKPVWFFLLPPSSLTHYADTVKQWAELARACN
                     VQHLIFTSSTSVYGDTARECDETATPDPQTESARQILAAEQHLLDSGISNIDILRLGG
                     LYCAERHPVSRLVQKQNIPGGNRPINIVHRNIAVESLFQTAFNPGGRRLKNIIEPRHP
                     TRREFYTEEAAKLGLPALDFAPDDSVGKIIRTVCDNGLSL"
     gene            10121..10687
                     /locus_tag="ACFM5C_000013"
     CDS             10121..10687
                     /locus_tag="ACFM5C_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032934 - sterol binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HFC6067807.1"
                     /translation="MSAFLPIINRLILQSPDSRSELAAFAGKTLTLNIAGLKLAGRIT
                     EDGLLSAGNGFADTEITFRNSAVQKILQGGEPGAGDIGLEGDLILGIAVLSLLGSLRS
                     RASDELARIFGTQADIGSRAADIGHGIKQIGRNIAEQIGGFSRESESANIGNEALADC
                     LDEISRLRDGVERLNERLDRLERDIWID"
     gene            10707..11597
                     /locus_tag="ACFM5C_000014"
     CDS             10707..11597
                     /locus_tag="ACFM5C_000014"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFC6067808.1"
                     /translation="MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGI
                     KEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIALRAVPIIGINQGH
                     LGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIRESKTAERAIALNDAVLSRGG
                     AGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP
                     QSMTNRPIAIPDTSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHP
                     TDYQYFKTLRQKLHWGEQLV"
     gene            11622..12380
                     /locus_tag="ACFM5C_000015"
     CDS             11622..12380
                     /locus_tag="ACFM5C_000015"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6067809.1"
                     /translation="MNPKTPPDHTEDAVRLSKRMAQLGLCSRREADGYIEQGWVTVNG
                     KTAVLGQKVSPADRIELNKKAHEQQAARITILLNKPVGYVSAQAEKGYKSAAELITPE
                     NHWEGDTSRIRFDPKHKIGLAPAGRLDIDSVGLLVLTQDGRIAKQLIGENSGSEKEYL
                     VRVRGKLDEKGLALLNHGLSLDGEKLRPAQVEWQNEDQLRFVLKQGKKRQIRRMCELV
                     GLRVVGLKRIRMGKVKLGRLPPGKWRYLAPGESF"
     gene            complement(12435..13100)
                     /locus_tag="ACFM5C_000016"
     CDS             complement(12435..13100)
                     /locus_tag="ACFM5C_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6067810.1"
                     /translation="MTVLSKEQVLSAFKNRKSCRHYDAARKISAEDFQFILELGRLSP
                     SSVGSEPWQFVVVQNPEIRQAIKPFSWGMADALDTASHLVVFLAKKNARFDSPFMLES
                     LKRRGVTEPDAMAKSLARYRAFQADDIKILDDSRALFDWCCRQTYIALGNMMTGAAMA
                     GIDSCPVEGFNYADMERVLSRQFGLFDAAEWGVSVAATFGYRVQEIATKARRPLEETV
                     IWA"
     gene            complement(13301..14074)
                     /gene="folE2"
                     /locus_tag="ACFM5C_000017"
     CDS             complement(13301..14074)
                     /gene="folE2"
                     /locus_tag="ACFM5C_000017"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HFC6067811.1"
                     /translation="MNTIADVQSSRDLRNLPINQVGIKDLRFPITLQTAEGIQSTVAR
                     LTMTVYLPAEQKGTHMSRFVALMEQHTEALDFAQLRRLTAEMVALLDSRAGKISVSFP
                     FFRKKTAPVSGIRSLLDYDVSLTGEIKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHN
                     QRSHVTVSLTADAEVGIEEVIDYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDM
                     VRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAYP"
     gene            14266..15423
                     /locus_tag="ACFM5C_000018"
     CDS             14266..15423
                     /locus_tag="ACFM5C_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFC6067812.1"
                     /translation="MKFATKAIHSSYDCDEHNRALMPPIYQNSMFALHEIGENVPYRY
                     SRLSNPTRQILEDTVADLEHGAAGFAFSSGMAGIDAVWRTFLQPGDTIVAVADIYGGA
                     YDLLVDVYQKWGVNVVFADLGNPDNLDELLKAHKVKLVWLETPSNPLLRLVDIKALAA
                     KAKAAGALVGIDNTFATPYLQQPLDMGCDFVFHSATKYLCGHSDVLMGIVVAKTKELA
                     QPLHDMMVHTGAVAGPMDCWLVLRGIKTLALRMNAHYQNALEIARRLEAHPAIEKVFH
                     PGLPSHEHYELAKTQMPKGIGGVVTVYLKNDTREAANSVIKNMKLVKMASSLGGVESL
                     VNHCYSQSHSGVPHNVKMEMGIRVGLLRFSVGIEDVDDIWNDISAALDTTL"
     gene            complement(15486..16487)
                     /gene="hemB"
                     /locus_tag="ACFM5C_000019"
     CDS             complement(15486..16487)
                     /gene="hemB"
                     /locus_tag="ACFM5C_000019"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFC6067813.1"
                     /translation="MQFPYRNVPASRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLE
                     GSAREEDVPSMQGVKRQSLDRLLFTAEEAVKLGIPMLALFPVVTANKTERAQEAYNPE
                     GLVPSTVRALRERFPELGIMTDVALDPYTVHGQDGLTDENGYVMNDETVEVLVKQALC
                     HAEAGAQVVAPSDMMDGRIGAIREALEDAGHIHTLIMAYSAKYASAFYGPFRDAVGSS
                     GNLGKADKKTYQMDPANTDEALHEVALDIQEGADMVMVKPGLPYLDVVRRVKDEFGVP
                     TYAYQVSGEYAMLQAAVANGWLDGDKVVLESLLAFKRAGADGILTYYAIEAAKMLKR"
     gene            complement(16670..16954)
                     /gene="yhbY"
                     /locus_tag="ACFM5C_000020"
     CDS             complement(16670..16954)
                     /gene="yhbY"
                     /locus_tag="ACFM5C_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HFC6067814.1"
                     /translation="MTDTKLNTKEILELKARAHHLHPVVMVGQQGLTDAVIKETDAAL
                     TAHELIKVRVFGDDRAERIEICTALCEAVDAQPVQHIGKLLVLWRKNIEG"
     gene            17064..17684
                     /locus_tag="ACFM5C_000021"
     CDS             17064..17684
                     /locus_tag="ACFM5C_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HFC6067815.1"
                     /translation="MAVRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKD
                     KLIKPGTVLADLGSAPGSWSQVAAKLTGTSGAVFALDILPMEAIGGVSFIQGDFREND
                     VLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQVRSFYLCELALDFASQHLKTGGSFL
                     VKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYLLGKNKR"
     gene            17748..19715
                     /gene="ftsH"
                     /locus_tag="ACFM5C_000022"
     CDS             17748..19715
                     /gene="ftsH"
                     /locus_tag="ACFM5C_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFC6067816.1"
                     /translation="MGNTFKSILVWVALGIGLMAAFNALDGKKEDNGQIEYSQFIQQV
                     NNGEVSGVNIEGSVVSGYLIKGERTDKSTFFTNAPLDDSLIKTLLDKNVRVKVTPEEK
                     PSALAALFYSLLPVLLLIGAWFYFMRMQTGGGGKGGAFSFGKSRARLLDKDANKVTFA
                     DVAGCDEAKEEVQEIVDYLKAPNRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG
                     VPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN
                     DEREQTLNQLLVEMDGFESNQTVIVIAATNRPDVLDPALQRPGRFDRQVVVPLPDIRG
                     REQILNVHSKKVPLDKSVDLLSLARGTPGFSGADLANLVNEAALFAGRRNKVKVDQSD
                     FEDAKDKIYMGPERRSMVMHEDEKRATAYHESGHAIVAESLPFTDPVHKVTIMPRGRA
                     LGLTWQLPERDRISMYKDQMLSQLSILFGGRIAEDIFVGRISTGASNDFERATQMARE
                     MVTRYGMSDKMGVMVYAENEGEVFLGRSVTRSQNISEKTQQDIDAEIRRILDEQYQVA
                     YKILDENRDKMETMCKALMEWETIDRDQVLEIMAGKQPSPPKDYSHNLRENADAAEDN
                     APHAPTREETEAPAPADTASTESEQQPENKA"
     gene            19937..20368
                     /locus_tag="ACFM5C_000023"
     CDS             19937..20368
                     /locus_tag="ACFM5C_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HFC6067817.1"
                     /translation="MKKVEKNILVLHGADKMFELVDKVEDYPHFLPWYSKTEVIGRSG
                     NELKARLFMDYMHVRQSFATHNRNIPGREIRMELLEGPFKTLRGTWKFIDLGDDMCKI
                     EFNLEYDFSNAVLSALISPVFNHLSATLVEAFVKEADRRYA"
     gene            20361..20639
                     /locus_tag="ACFM5C_000024"
     CDS             20361..20639
                     /locus_tag="ACFM5C_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HFC6067818.1"
                     /translation="MLEIEIVYGLPDRQVLKTMQLAEGTTVRAAALQSGLDGIFEDLN
                     LHSAPLGIFGKAVKDDTPLRDGDRIEVYRPLLIDPKEARRKRVQNQEE"
     gene            20692..21270
                     /gene="pth"
                     /locus_tag="ACFM5C_000025"
     CDS             20692..21270
                     /gene="pth"
                     /locus_tag="ACFM5C_000025"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFC6067819.1"
                     /translation="MSNKIKMLVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE
                     KKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPC
                     GRIKFKLGGGNGGHNGLKDIQAKLGTADYYRLRLGIDHPGDRNLVVGYVLNKPSTEHR
                     RQIDDAVAKSLQAIPDILAGKWEEATRFLHSK"
     gene            21331..21537
                     /locus_tag="ACFM5C_000026"
     CDS             21331..21537
                     /locus_tag="ACFM5C_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HFC6067820.1"
                     /translation="MTELKQLIQTESIPVIEETLDFLLYECSIDDAPSAEEVAQWRDI
                     LAARGGKFLRLSKICQTWLDEEAA"
     gene            21534..21896
                     /locus_tag="ACFM5C_000027"
     CDS             21534..21896
                     /locus_tag="ACFM5C_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HFC6067821.1"
                     /translation="MKLPRNRFSLLSALWFAGGIYSLLFKAADTAPPPFPHFDKAAHL
                     ALFFAQIWLLTKAFKTGKLPIPYRSLMVFALCFALFSECAQAWFTATRTGSLGDVLAD
                     MAGTVLALFAARAADRPD"
     gene            22127..23542
                     /locus_tag="ACFM5C_000028"
     CDS             22127..23542
                     /locus_tag="ACFM5C_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HFC6067822.1"
                     /translation="MNLHAKDKTQHPENVELLSAQKPITDFKGLLTTIISAVVCFGIY
                     HILPYSPDANKGIALLIFVAALWFTEAVHITVTALMVPILAVVLGFPDMDIKKAMADF
                     SNPIIYIFFGGFALATALHMQRLDRKIAVSLLRLSRGNMKVAVLMLFLVTAFLSMWIS
                     NTATAAMMLPLAMGMLSHLDQEKEHKTYVFLLLGIAYCASIGGLGTLVGSPPNLIAAK
                     ALNLDFVGWMKLGLPMMLLILPLMLLSLYVILKPNLNERVEIKAESIPWTLHRVIALL
                     IFLATAAAWIFSSKIKTAFGISNPDTVIALSAAVAVVVFGVAQWKEVARNTDWGVLML
                     FGGGISLSTLLKTSGASEALGQQVAATFSGAPAFLVILIVAAFIIFLTEFTSNTASAA
                     LLVPIFSGIAMQMGLPEQVLVFVIGIGASCAFMLPVATPPNAIVFGTGLIKQREMMNV
                     GILLNILCVVLVALWAYAVLM"
     gene            23661..24170
                     /locus_tag="ACFM5C_000029"
     CDS             23661..24170
                     /locus_tag="ACFM5C_000029"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6067823.1"
                     /translation="MIILHTNKGDIKIELDFDKAPVTAKNFEQYVKDGFYDGVIFHRV
                     IKGFMIQGGGMDENMNEKETRDPIQNEASNGLPNDKYTIAMARTSDPHSASAQFFINT
                     ADNAFLNFRSKELYGKTVVQDWGYAVFGKVVDGFDVVDAIEGVSTKRHGYHDDVPSEP
                     VVIIKAEAV"
     gene            24333..25715
                     /locus_tag="ACFM5C_000030"
     CDS             24333..25715
                     /locus_tag="ACFM5C_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HFC6067824.1"
                     /translation="MANIARDIFKAYDIRGIVGKTLTDDAAYLIGRAIAAKAAEKGMT
                     RIALGRDGRLSGPELMEHIQRGFTDSGIDVLNVGMVATPMLYFAAINECGGSGVMITG
                     SHNPPDYNGFKMMLGGDTLAGEAIQELLAIIEKDGFVAADKQGNVTEKDISGEYHNHI
                     VGHIKLKRPMNIAIDAGNGVGGAFAGKLYKGLGNEVTELFCDVDGNFPNHHPDPSKPK
                     NLQDLIAALKNGDAEIGLAFDGDADRLGVVTKDGNIIYPDRQLMLFAQDVLSRNPKAK
                     VIFDVKSTRLLAPWIKEHGGEPVMEKTGHSFIKSSMKKTGAPVAGEMSGHIFFKERWF
                     GFDDGLYAGARLLEILSASDNPSEVLNNLPQSISTPELNIALPEGSNGHQVIDELAAK
                     AEFEGATEIITIDGLRVEFPDGFGLMRASNTTPILVLRFEADTQEAIERIQNQFKAVI
                     ESNPNLIWPL"
     gene            complement(25735..26490)
                     /locus_tag="ACFM5C_000031"
     CDS             complement(25735..26490)
                     /locus_tag="ACFM5C_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6067825.1"
                     /translation="MIKIRNIHKTFGENTILRGIDLDVGKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEDGQIEFDNERPLKIDFSKKPSKHDILALRRKSGMVFQQYNLFPHKTAL
                     ENVMEGPVAVQGKPAAQAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNAMKELAREGWTMVVVTHEIKFALEVATTVVVMDG
                     GVIVEQGSPKELFDHPKHERTRRFLSQIQSTKI"
     gene            complement(26500..27216)
                     /locus_tag="ACFM5C_000032"
     CDS             complement(26500..27216)
                     /locus_tag="ACFM5C_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6067826.1"
                     /translation="MFNNFLASLPFMTETRADMIVSAFLPMVKAGFAVSLPLAAASFV
                     IGMVIAVAVALVRIMPAGGIARKILLKLVEFYISVIRGTPLLVQLVIVFYGLPSVGIY
                     IDPIPAAIIGFSLNVGAYASETIRAAILSVPKGQWEAGFSIGMTYMQTFRRIVAPQAF
                     RVAVPPLSNEFIGLFKNTSLAAVVTVTELFRVAQETANRTYDFLPVYIEAALVYWCFC
                     KVLFLIQARLEKRFDRYVAK"
     gene            complement(27206..28033)
                     /locus_tag="ACFM5C_000033"
     CDS             complement(27206..28033)
                     /locus_tag="ACFM5C_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6067827.1"
                     /translation="MMLKKFVLGGIAALVLAACGGSEGGSGASSAPAQSAVSGSLIER
                     INNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMA
                     GLKAGRFDVVANQVGLTSPERQATFDKSDPYSWSGAVLVARNDSNIKSIDDIKGVKTA
                     QSLTSNYGEKAKAAGADLVAVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGV
                     KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ"
     gene            28318..29226
                     /locus_tag="ACFM5C_000034"
     CDS             28318..29226
                     /locus_tag="ACFM5C_000034"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HFC6067828.1"
                     /translation="MNTPQSAIIPDHAQAGIFIEADFAANRLNDIKAACRASLDALTA
                     LKARFPDDILGLTIAFGSKAWATFGHTDEGSEIKPFSEMGNGLAPSTQHDMSIHIQSF
                     RQNAAYALAQSVLGAFGDSICVASEEHGLRLYQDRGLDGFVDGTENPQGDENVREVAI
                     IPEGKPDAGGSYVLLQKYLHDLKKWDAVPVAEQEASVGRGKETDDEFGRDVRLPDSHL
                     GRVNLKENGVGLKIVRRSLPFGKISGEHGLMFTAYCRTLHNIEAQLLSMFGDTDGKTD
                     LLLRHLSAAVSGGYYYAPSVERLQNL"
     gene            29306..32920
                     /gene="recB"
                     /locus_tag="ACFM5C_000035"
     CDS             29306..32920
                     /gene="recB"
                     /locus_tag="ACFM5C_000035"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HFC6067829.1"
                     /translation="MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLE
                     QKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAE
                     HHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
                     QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQISRYLSR
                     PYLNFRRPQADLKQAQRNAETSWQTICRLLPELEAGFWRIHPDLNGNSYRKNSFGNLF
                     KELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAALKKGKTPDAAAFAELQKLADFGRD
                     LNALEEAEEATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAET
                     LARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIY
                     AYLQAAGDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESR
                     LSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQ
                     SGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRA
                     GTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQT
                     HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNR
                     AIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAK
                     AQLSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGSPQ
                     DSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTENAPPPAAYRSNAGQTAE
                     FAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTAS
                     DGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEM
                     AEACRKTPLTGAYDLSDISPECRCPEMGFTLHTEDFSLKRLRDWFARDDIRLPEVCRA
                     AAETLDFHTVNGFLNGFVDMVCQDPDGNICVIDYKSNHLGTDASAYTQQAMDEAVAHH
                     HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK
                     "
     gene            32959..33318
                     /locus_tag="ACFM5C_000036"
     CDS             32959..33318
                     /locus_tag="ACFM5C_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6067830.1"
                     /translation="MNIKHLITAALIASAAFAAQAAPQKPVSAAQTAQHPAVWIDVRS
                     EQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAEAALQELKKAGYT
                     NVANHGGYEDLLKKGMK"
     gene            33560..34039
                     /locus_tag="ACFM5C_000037"
     CDS             33560..34039
                     /locus_tag="ACFM5C_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HFC6067831.1"
                     /translation="MKHILPLIAASALCISTASAHPAGKPPTQNETAMTTHTLTSKYS
                     FDETVSRLETAIKSKGMNIFAVIDHQEAARRNGLTMQPAKVIVFGTPKAGTPLMVKDP
                     AFALQLPLRVLVTETDGKVRAAYTDTRALIAGSRIGFDEVANTLANAEKLIQKTVGE"
     gene            complement(34110..35489)
                     /gene="radA"
                     /locus_tag="ACFM5C_000038"
     CDS             complement(34110..35489)
                     /gene="radA"
                     /locus_tag="ACFM5C_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFC6067832.1"
                     /translation="MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPK
                     NARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELDRVLGGGLVDGAVILLGGDPGIG
                     KSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
                     LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTK
                     DGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVS
                     NPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLA
                     MLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAF
                     GEIGLSGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEA
                     IDICREDRD"
     gene            complement(35678..36742)
                     /gene="hemE"
                     /locus_tag="ACFM5C_000039"
     CDS             complement(35678..36742)
                     /gene="hemE"
                     /locus_tag="ACFM5C_000039"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFC6067833.1"
                     /translation="MTLLKNDTFLRALLKQPVEYTPIWMMRQAGRYLPEYKATRAKAG
                     SFLDLCKNTELATEVTIQPLERFDLDAAILFSDILTVPDAMGLGLYFAEGEGPKFKRA
                     LQHEDDIAKLHVPDMEKLQYVFDAVSSIRKALDGRVPLIGFSGSPFTLACYMVEGGSS
                     KEFRTIKTMMYSRPDLLHKILDTNAQAVTAYLNAQIDAGAQAVQIFDTWGGVLSDEAF
                     KEFSLKYIRQIVAGLKRESEGRRVPVIVFAKGGGLWLESMAEIGADALGLDWTCNIGE
                     ARRRVGKQVALQGNFDPFALFGTPESIRTEVARILADYGQGSGHVFNLGHGINQHADP
                     EHAKILVDTVHELSRQYHGG"
     gene            complement(36817..38034)
                     /locus_tag="ACFM5C_000040"
     CDS             complement(36817..38034)
                     /locus_tag="ACFM5C_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HFC6067834.1"
                     /translation="MKTVVWIVVLFAAAVGLALASGIYTGDVYIVLGQTMLRINLHAF
                     VLGSLIAVVVWYFLFKFIIGVFNIPEKMQRFGSARKGRKAALALNKAGLAYFEGRFEK
                     AELEASRVLVNKEAGDNRTLALMLGAHAAGQMENIELRDRYLAEIAKLPEKQQLSRYL
                     LLAESALNRRDYEAAEANLHAAAKMNANLTRLVRLQLRYAFDRGDALQVLAKTEKLSK
                     AGALGKSEMERYQNWAYRRQLADAADAAALKTCLKRIPDSLKNGELSVSVAEKYERLG
                     LYADAVKWVKQHYPHNRRPELLEAFVESVRFLGERDQQKAIDFADAWLKEQPDNALLL
                     MYLGRLAYGRKLWGKAKGYLEASIALKPSISARLVLAKVFDETGEPQKAEAQRNLVLA
                     SVAEENRPSAETC"
     gene            complement(38031..39365)
                     /locus_tag="ACFM5C_000041"
     CDS             complement(38031..39365)
                     /locus_tag="ACFM5C_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HFC6067835.1"
                     /translation="MGEPENKSSEPVREIQASKEMPSETSSPRKENETEVHIPAAPFI
                     VKQSGSNALAVCALVLAALGLGTSGFLFVQGQNVLKNQELAFNQKIDKAALGESENAA
                     LLKDNLNRQAAIQSELDRLDGNVKANGEQILEMQKSYRELTKGRADWLVDETETILNL
                     AAQQLVLTGNIQTAVGVLEHIDSRLSRFNQAELLPIKQAVSSDLAELKNRPYVDISGT
                     ALRLDRLEIAVSGLPLILDGVLKPSVQARNEAVSASWWQNVWEKSLGTLKGLVEIRRL
                     ENNDAMLISPEQAYFVRENLRLRLLDARTALMQRNSEVYQGDLNNAETAVRQYFDAKS
                     PATQSWLKELAELKALDVRMTADDGLKNSLNAVRAYRDGTRMTTAENQEAEQATSEPA
                     NENTASEPAAASDVKTIEAPSLPSERKPEQPAKKQPVPEKAGRSPSAKGERA"
     gene            complement(39380..40141)
                     /locus_tag="ACFM5C_000042"
     CDS             complement(39380..40141)
                     /locus_tag="ACFM5C_000042"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFC6067836.1"
                     /translation="METAKPIMLIVRPSGRAKDDVETCRRAGWQAEVLSPIEIEADAA
                     GLELLSEQYARADAVFWVSPTAVETAVPYLNLSDGIKIHIAVGQGSRRALERYLGRTV
                     IAPHDGNDSEAVLRLPVWNSLPEGARVLFVRGHGGRDFLMNALQEKGFRTEMAEVYFR
                     RHKPLNFQNFQTENIAAAYITSTELVRLLFGQLPPQFSRFFKSLLYFTHHPRIAEALK
                     REGVCSVETVPTLEAALSHSSISVSDGMVFPGTSN"
     gene            complement(40159..40581)
                     /locus_tag="ACFM5C_000043"
     CDS             complement(40159..40581)
                     /locus_tag="ACFM5C_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein Gly1ORF1"
                     /protein_id="HFC6067837.1"
                     /translation="MKKMFLSAVLLLSAAAQTVWADTVFSCKTDNNKYIEVQKINRNL
                     YEYSFGSAAKKEIAIRNSKADLSGRSDRWQGMGSGRWATMKFQNGEFMYTIWTGFDSV
                     THTESSGVVVERRGKEVARVGCTPQTAQANFNDADFSR"
     gene            complement(40832..41152)
                     /locus_tag="ACFM5C_000044"
     CDS             complement(40832..41152)
                     /locus_tag="ACFM5C_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HFC6067838.1"
                     /translation="MNFQDYLATFPSIDHLGGLDVQDADGKTVHHIPAVQGKLGSLKL
                     YNALAERFDGKLDKEAAEQGLIWFAEHVADARAHPGKHPNIDLLEKVVQSGETLLLKP
                     LAAQ"
     gene            complement(41175..41801)
                     /gene="upp"
                     /locus_tag="ACFM5C_000045"
     CDS             complement(41175..41801)
                     /gene="upp"
                     /locus_tag="ACFM5C_000045"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFC6067839.1"
                     /translation="MNVNVINHPLVRHKLTLMREADCSTYKFRTLTTELARLMAYEAS
                     RDFEIEKYLIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQ
                     RDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLV
                     AAPEGVKAVNDAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR"
     gene            complement(41907..42218)
                     /gene="grxD"
                     /locus_tag="ACFM5C_000046"
     CDS             complement(41907..42218)
                     /gene="grxD"
                     /locus_tag="ACFM5C_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HFC6067840.1"
                     /translation="MASIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAG
                     CTDYVTVNVLENPEVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMYEAGELQELLK
                     A"
     gene            complement(42319..42534)
                     /locus_tag="ACFM5C_000047"
     CDS             complement(42319..42534)
                     /locus_tag="ACFM5C_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HFC6067841.1"
                     /translation="MKAIHPYACPRCCRLPANTFRTGMANSASKFCIAKGGRREVKKD
                     ESGGGYALCHLPDSRIVEEWEYFRSQH"
     gene            complement(42560..43339)
                     /locus_tag="ACFM5C_000048"
     CDS             complement(42560..43339)
                     /locus_tag="ACFM5C_000048"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6067842.1"
                     /translation="MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESF
                     AEVSAIAEVYEHIYCTIGVHPDSKEAEEFSIAEMVAAAAHPKVVGIGETGLDYYWCKG
                     DLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
                     RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPA
                     FVRHTAEHIAKLRNQTLEQVAAYTTENFYRLFKKVPDMRPV"
     gene            complement(43344..43694)
                     /locus_tag="ACFM5C_000049"
     CDS             complement(43344..43694)
                     /locus_tag="ACFM5C_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HFC6067843.1"
                     /translation="MSDGQNIPAKMMSLQLKDMNLLYSSYMPFLEHGGLFVQTNDVFS
                     IGDDILLAVEILNFPKLFLPTKVAWINPARTSSKPKGVGLAFTKHENCLKVKDQIEVE
                     LGNTIGGSRPTFTM"
     gene            complement(43698..44675)
                     /locus_tag="ACFM5C_000050"
     CDS             complement(43698..44675)
                     /locus_tag="ACFM5C_000050"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFC6067844.1"
                     /translation="MIYPWHNEQWRQIAEHWERRPNAWLFAGKKDTGKTTFARFAAKA
                     LLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREII
                     DNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI
                     KSRCRKMVLPAPSHGEALAYLRDRGVAEPEEFLAFHSGAPLFDEADGVRALRIKLLDI
                     LAEPRLLKILDYAALFDKEKLPLDVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ
                     TASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKENG"
     gene            complement(44709..45839)
                     /locus_tag="ACFM5C_000051"
     CDS             complement(44709..45839)
                     /locus_tag="ACFM5C_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6067845.1"
                     /translation="MFTDENMTAKEELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKI
                     TRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECNFAISLPDTSRFRVNAMIQRGAT
                     ALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
                     SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDR
                     ETMDYAIAFAETGHLCMATLHANSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQ
                     RLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKSTTLGMQTFDQHLYQL
                     YEKGDISLQEALKNADSAHDLRLAVQLRSRRAQSSSPDLELL"
     gene            46007..46708
                     /locus_tag="ACFM5C_000052"
     CDS             46007..46708
                     /locus_tag="ACFM5C_000052"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HFC6067846.1"
                     /translation="MSLKTVAVIGAMEQEIELLREMMENVKAVSFGKFAAYEGELAGK
                     RMVLALSGIGKVNAAVATAWLIHQFAPDCVINTGSAGGLGKGLKVGDVVVGTEIAHHD
                     VDVTAFGYVWGQVPQLPAVFVSDGLLVGKAKQAAEVFEGAAVEQGLIVSGDRFVHSSE
                     GVAEIRKHFPKVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTA
                     AASSAKMVAEIVKSL"
     gene            46851..48644
                     /gene="lepA"
                     /locus_tag="ACFM5C_000053"
     CDS             46851..48644
                     /gene="lepA"
                     /locus_tag="ACFM5C_000053"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFC6067847.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLADRFIQYCGGLDLREMSTQVLDSM
                     DIEKERGITIKAQTAALNYKARDGQVYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTAIDLGVEVVPVLNKIDLPAADPERVEQEIEDIIGIDAVGAVQ
                     CSAKSGIGVEDVLEEIVAKIPAPTGDENAPLQAVIVDSWFDNYVGVVMLIRVKNGTIK
                     LKDKVRFMSTKAETQVEQLGVFTPKSVQKQELKAGEVGFLITGVKELGQAKVGDTVTL
                     VANPATEPLPGFQEVQSQVFAGLYPVESHDYEALRDALEKLQLNDASLKFEPEVSQAL
                     GFGFRCGFLGLLHLEIVQERLEREFDMDLITTAPTVVYEVVLKNGEKIEVENPSKLPD
                     IGSIETILEPIITATILVPQEYVGNVMTLCNQKRGVQVNMQYMGRQVMLTYDLPMNEV
                     VMDFFDKLKSTSRGYASLDYHFKEFQPSDLIKLDIMVNGEKVDALSLIVHRQSAVHRG
                     RELASKMRELIPRQMFDIAVQAAIGSQIIARENVKALRKNVLAKCYGGDITRKKKLLE
                     KQKAGKRRMKQVGNVEIPQSAFLAILQVSDK"
     gene            48787..49806
                     /gene="lepB"
                     /locus_tag="ACFM5C_000054"
     CDS             48787..49806
                     /gene="lepB"
                     /locus_tag="ACFM5C_000054"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFC6067848.1"
                     /translation="MNTMLMSGAAAALLAGIILYFKSDKKRQENGEWSSGLEYAYILT
                     AVGVFAALSLFMSFTAVFLIFVVLCGTAWGVYKYRLKTHPEISESSHFGDYFGSFFPT
                     VLVLFLIRSFIAEPFQIPSSSMRPGLIKGDFILVGKFSYGLRVPVLNNIFIPTGKIER
                     GDVVVFNYPLQPEMTYIKRIVGIPGDVVEYRDKILTVNGKPTSDIPNGTYRYPDDTDP
                     SEIHNTDMFRSGLDGKSFNILKKEGQPAVSLPVLGKYTSDIMSENGYSIEQSGLEHCQ
                     YADDGSGFVCKVPEGRYFAMGDNRDNSADSRYWGFVDDKLVVGKAMFILMNFGDFGRA
                     GTAIR"
BASE COUNT        11813 a        14185 c        12617 g        11287 t
ORIGIN      
        1 tactgtctgc ggcttcgtcg ccttgtcctg atttttgtta atcccctata tcagataaaa
       61 cagcggtaaa attgccgtct gaaaccaact ctgcgccata cgggacacgc tctgcacgtc
      121 tatttgcctc cgatatatcc tccctactgt aggaacgtct gccgatttgc acgaaatcgg
      181 cacctctagc acccttcagg atggcggacg ttatccgttc ttgggattct gcaagacggt
      241 cgacggcatt atacagacgc tcggtctgat acccttccga agcaacctgc ttcaggtatt
      301 ccaaataacc gtaacccaac gcccctccga caagcagggt cgtcaacgct accagcgttg
      361 ccgaacggat tttagggggc atatcttgaa gcatatctct accgaaccga accaaagtct
      421 ctttaaagtc ggactctaca cgcgtagaac cctcggaaat cttgaagttc aactcatact
      481 gcttccgttt gtccgctgtc aaccgcttga ggttgtcatc cccgtattgg acggttgaca
      541 caaccctgta cagactgtcc tgtatttcga ccagcgtctg tgcaaagttg gcggtcatac
      601 tggattccca acccttgccg ccgattctga tactcaaaac ggtatccagg cgttccagca
      661 gggcttcggg agacagcagt gcgtattctt caatattttc cataggttga ttatagcaga
      721 accttatacc tgttacagac aaggttgtcg ggatttgaac gtccgtcgag cttggttcgt
      781 atagagccgt agggggtgtt tagggctttg gcggcagctt gtacgctggg gaacgtgagt
      841 gtttcgcctg tggcggtgtc gaggatggag acaggttttt ggttttgggg aggcgtattt
      901 tccttcattt taagtttccc gcactccgga cacccatact ttgactttat agctgtgtcg
      961 taatacaaaa gttggacaac cccgtgcgta ggacatctaa cactggaagg tttataaatg
     1021 ccactgaact ccaacaattc taaatgtgga aatttctctt gaaagcgtga tttggcggta
     1081 tcgaaagtca ttcgcttacc cataatttgt ctccataggt tatgtgcaaa tggattacac
     1141 aaccaaaata tagaaatttt caaatttttt gagacctacc tggaatcctg cgcaagcaca
     1201 atgtaaagaa aaatggtata cgtctttact aaatctttac ataaattaac tctaatcggg
     1261 atttgaacgt ccgtcgagct tggttcgtag gatttagggt gttgtgaacc ttacctatcg
     1321 tacccaagca ctttgtacct gtttgaaata aggttgtcgg gcgacgttcg acccttgagc
     1381 ctgtgattga tttgttggaa atgtacacct aaagcagcac ctgcggcagt aacgcttggg
     1441 aacgtgagtg tttcgttggt cgttgtgtcg aggatgagga ggggcttccc tacatttgga
     1501 ggtgtttggg tttttgacat cttagcacac tcaggacacc cgtactttga ctttataagg
     1561 gcattaaatg tcgaataacg aacgttcccg tgcataggac aattaacggt tactgggtaa
     1621 ttcacaccgt caaagccggt tagagagata ttagggaata tatcagtaag ttcagaagct
     1681 gcttggttga aagatttggc catttgagac tccaaaattg attgtcaaat ggatttaata
     1741 gcaaatttat aaaaatgtca aatttttcga gaagcacctg atagtggcga ggggtataca
     1801 ctgttaaaaa gtgtatacgt catttagtgc agatgtgaac cttatacctc cctgcaagta
     1861 aagtctctgt gtgaacccga ccttttatac ggtcagtgat agctgctggg tttataccca
     1921 atgaccttgc agcagatgct cttgagggga atgtaagtgt ttcgccagtt acagtatcct
     1981 ccaatactgt atttttagat aatttatcta ttgtatcttc tggaattttg tgggaattga
     2041 caccataaga tgcacatttt ggacacccac ttttagagtc caacatactt ttgaatgtag
     2101 agcaagtaac cctcccgtgt ataggacaga cgattaccgt cgggtaacga acgccattga
     2161 actccacaag attcaaatgt ggaaatttag aggttagctt agaaactgct tgagtaaatg
     2221 taagtgccat agtggttgtg aacttacttt accaacctat aacgatacct aatcaatcgg
     2281 tcaaacggag tgcgtccgct taaacgtaca gctaaagtgc tgttggagca accgataaat
     2341 ttactggcag ccagtgtact tgcaaactcg tagatttccc ctgtctctgt gtcctccaac
     2401 ctaatggcaa cggcgtttgg agagggcttt tcgggatttc gagtacattc aggacatcct
     2461 gttgaggatt tcatggcagc ttgtagattc ccgtaaacaa ccgacccatg caaagggcat
     2521 tggattgtta ccggttcgta gtttttagtg aacttcaaaa ccgtcttatc aggaaattta
     2581 ctggaaaacc ttaactgaac atcttgtagc gagagtgatt ttggcattat agacctttct
     2641 aaaatgaaag cattatacaa ccaaaatata gaaattttca aattttctct gaacgcactg
     2701 gtatccgatg gagctaaatg taaagaaaag ggtatatgtc cttactaaat ctttacacat
     2761 tttaactgta tagtgtttga caagcaacag gcataggcgc ataatgcacc cgtagttaga
     2821 tagatagtaa ggagataacc aatgacttag cacctgcccc cctctctctc gcgcaccccg
     2881 cccctcgctt gcggctaatg ggctttgcgc gaaatataca ctttcatctc ctgcatggct
     2941 taaccgccta tgcaatagta cacacatcaa caaatcaggc tggcacgtct tggcattggc
     3001 tgacgtacca ttgtagcccg aaatgttgat accctactat ttatgaccaa cggcggatta
     3061 gggcttcaga cggcaatttt actgcaaaac cttatgcgaa cggatgatgc agcacaatcg
     3121 tttcttctcg gtcggggccg gtggagacga tggcgaccgg cgcgccgcag acttcttcaa
     3181 tccgtttcaa atatgctttg gcattatcgg gcagttcctc ataatttttg atgccgaaag
     3241 tcgattcttt ccaaccctcc attgtttcgt aaatcggttt gcaggtttcc accgcatccg
     3301 aaccgcaagg caggatatcg gttttgccgc cgtcgggcaa ttcgtagccg acgcagatat
     3361 tgatggtttc aacgccgtcc attacatcga gtttggtaat gcacataccg gaaatgccgt
     3421 tgatttggat ggagcgtttc agggcggcgg catcaaacca gccgcagcgg cgtgcgcggc
     3481 cggttaccga gccgaattcg tgtccgcgtt ccgccaaacc tgcgcctact tcgtcgaaca
     3541 attcggtcgg gaacgggcct gaaccgacgc gcgtggtata ggctttgacg atgcccaaaa
     3601 cataatccag catttgaggg cctacgcccg cgcctgcgga agcggctccc gccagacagt
     3661 tggacgaggt aacgaaggga taagtgccgt agtcgatgtc caacaacgca ccttgcgcgc
     3721 cttcaaacag cagtttttcg ccgtttttgt ttttctcgtt caacacgcgg gacacgtcgg
     3781 taatcatcgg cgcaatgcgc agcgcgactt tttcgataac cgccatcacg tcttccgctt
     3841 taaccggctc ggcattgtgc agatgttgca gttggacatt gtaataggca aggatggcat
     3901 ccagtttttc acgcagtttt tcaggatgca gcaaatcggc ggcgcgaatg gcgcggcgtg
     3961 ccactttgtc ttcgtaggca gggccgatgc cgcggccggt cgtgccgatt ttgcctttgc
     4021 cgcgcgatgc ttcgcgggct tggtcgagcg cgatgtggta aggcaggatc agcgggcagg
     4081 tcggcgcgat tttcagacgg ccttcgacgt ttttcacgcc tgcagcgttt aactcgtcga
     4141 tttcgcccaa cagggcttcg ggggagacga caacgcccga accgatgaag cagtccagac
     4201 tttcatgcag gatgccgctc ggaatcaggc gcaaaatggt ttttttgccg ccgacgacca
     4261 aagtatgacc cgcattgtgg ccgccttgga agcgcaccac gccgccggct tcttccgcca
     4321 gccagtcaac gattttacct ttaccctcgt cgccccactg tgcgccgatt actacaacat
     4381 ttttagccat agccatataa cctatcgata ttaaaaatta ttgcggaaat ccccaaaccg
     4441 gtgcggcttt gcgccccacc acgatttgcc tttcatccgc catgaacggg tatttagcgt
     4501 ttcacgacct gccaaacgcc gtccgtcttt ttcagacggc ctgcaagctc ttccgaaaca
     4561 ttgtgtccga taccgtagtc aatcacgaca cactgccctt gttcacgcaa ggcttcgact
     4621 gcttcgcgcg ccgcttcggc atcttccgca tcgaccaaca cggcgggctg ccgttcgctg
     4681 gtgggcaaac gcccgataaa gctgcgcaag tcgaaactga atcccgttgc cgggcgcgcc
     4741 ctgccgaaat atccgcccaa tccgtcataa cgcccgccgc gcgcgaccgc gtcgtggaaa
     4801 tcggcggcat aggcggcata cagcaagccc gtgtggtaat tgtcgacgcg cagctcggac
     4861 aagtcgatat ggatttcaca atcggggaat gcgtcgcaca ccgcctgcaa ttcgcccaac
     4921 gcgccgccga ccgccgacaa atccggcaac cgtccgcgcg cgtcggacaa cacttcacgc
     4981 ccgccgtaca ggcgcggcag cagcgagaat gcttttgccc acataccgtc cagcttccaa
     5041 gccttgacct gcgcttcgac cgtctcggta tctttatcct gcatcaaggc aagcagcgtt
     5101 gcagactgcc ccgcatccaa atgcgccgca tcggacaagg cgcgaaatat gccgatatgc
     5161 cccagcgaaa gcagcacttt gcccatatcg gcaattttca tgcttttcag catcaggtct
     5221 atcagctcga tgtcgccacg gatgtcggca aaaccgtaca tttccgcccc tgcctgcaag
     5281 ggttcgcgca tattcagcag accgtcggac tgcgcgtgca acaccggacc ggcataacac
     5341 aaccggttaa tcccttggtt ggcggataaa agatgggcat cgatacgcgc cacctgcggc
     5401 gtgatgtcgg cgcgtatgcc caactgcctg ccgctgagcc tgtccgttac caaaatggtt
     5461 ttcagggaaa gccccgcatc gatatgcgtc agcagggaat gtgcgtactc catcagcgga
     5521 ggctgtacca gttcataacc gtgtacgcgg aacagtgcca acaactgctc cctcgcgctt
     5581 tcaagctgcc gcgcgttcgt gggcagtacg tcggcgatat gttccggaag ctgccatgtc
     5641 tgcatgagaa tctgccttct attttatcat gtcaatacaa aaggctgccc gatccgcaat
     5701 cagacggcat ctttgccgca acgcatcacg ccgctgtcaa aacggcgatg cttccttccg
     5761 attcagaatc cgaacagccc ctgtccgacg gctcaatgcc gtcaagtcgt taaaaccaaa
     5821 ctttaccata aaatacacac aatctgaata tacttttata ccctgtatcc gccgtctgac
     5881 ggcacggcat ttttttacga tataatgtgc gccattattt ctcatcactt cctgctgccg
     5941 ttttctgctt cagacggcat ttttgttgat tgaacactta tgctgctcga cctcaaccgc
     6001 ttttcctttt ccgtcttcct gaaagaagtc cgcctgctga ccgctcttgc cctgcccatg
     6061 ctgttggcgc aggtcgcgca ggtgggcatc ggttttgtcg ataccgtgat ggcgggcggt
     6121 gcgggcaagg aagacttggc ggcggtggct ttgggcagca gcgcgtttgc cacggtttat
     6181 attaccttta tgggcattat ggcggcgctg aacccgatga ttgcccagct ttacggcgcg
     6241 ggtaaaaccg acgaagtggg cgaaacggga cggcagggga tttggttcgg gctgtttttg
     6301 ggcgtgttcg gcatggtctt gatgtgggcg gcgattacgc cgttccgcaa ctggctgacc
     6361 ttgagcgatt atgtggaagg cacaatggcg cagtatatgc tgttcaccag cttggcgatg
     6421 ccggcggcaa tggtacaccg cgcactgcac gcctacgcct ccagcctgaa ccgcccgcgc
     6481 ctgattatgt tggtcagctt tgcggcgttt gtgttgaacg tgccgctgaa ctatattttc
     6541 gtttacggca aattcggtat gcccgctttg ggcggcgcag gctgcggact ggcgacgatg
     6601 gcggtgtttt ggttcagcgc gctggcattg tggatttata tcgccaagga aaatttcttc
     6661 cgcccattcg gactgacggc gaaattcggc aaaccggatt gggcggtgtt caaacagatt
     6721 tggaaaatcg gcgcacccat cgggctgtct tattttttgg aagccagcgc gttttcgttt
     6781 atcgtgtttt tgattgcgcc tttcggcgag gattatgtgg cggcgcagca ggtcggcatc
     6841 agtttgtcgg ggattctcta tatgattccg caaagcgtcg gctcggcggg gacggtgcgc
     6901 atcggctttt cgcttgggcg gcgcgaattt tcgcgggcgc gttatatttc gggcgtgtca
     6961 ctggtgtcag gatggatgct cgccgtgatt accgtgcttt ccttggtatt attccgttcg
     7021 ccgctggtaa gtatgtacaa caatgatccg gcggttttaa gcatcgccgc caccgtctta
     7081 ctgttcgccg gcttgttcca accggcagac ttcacccaat gtatcgcctc ctacgccttg
     7141 cgcggctaca aagttacaaa ggtgccgatg ttcatccacg ccgccgcctt ttggggctgc
     7201 ggtctgctgc cgggctacct gctcgcctac cgtttcgata tgggcattta cggcttctgg
     7261 acggcattga ttgcctcgct caccatcgcc gccatcgcct tggtgtggtg cttggaattg
     7321 tgcagtaggg agatggtcag atcgcataag gctgtctgaa aactccgccg attaaaaata
     7381 tagtggatta acaaaaacca gtacggcgtt acctcgcctt gccgtactat ttgtactgtc
     7441 tgcggcttcg ttgccttgtc ctgatttttg ttaatccact atagaaacga tgggctgaag
     7501 cccgccactg gcaatactca ttttaaagtt caaaccatgc aacccatccg ataccgaacc
     7561 gaccttaccc cctacaacac tttcggcctg cgcgcccaag cccgagcctt tattgcgctt
     7621 gaacacgccg acgggttgcg cgacatcgtc cggctacccg agttcaaccg agatactgtt
     7681 ttatggctgg gcggcggcag caatatcctt ttgatggagg actacgccgg tctggtcgta
     7741 catatggaaa acaaaggcat acgcgaaatt gctcgttcag acggcatggt tctgattgaa
     7801 gcgcaggcgg gcgaaatctg gcacgatttt gtcctgcacg ccgtcgcgct gggtttgaac
     7861 ggtttggaaa acctgagcct gattccgggt acggtcggcg cgtcgcccgt gcagaacatc
     7921 ggcgcatacg gcgtagaggc gaaagatgtg attcacagcg tgcgctgctt cgatttggat
     7981 acggaaacct ttgtaaccct ttccaatgcc gactgccgct tcgcctaccg cgaaagcctg
     8041 ttcaagcagg aaggtaaagg gcgttatgtg attgtttcgg tcgtatttgc attaaaaacg
     8101 cattttgtgc cgaacttggg ttacggcgat ttggcggccg ccgttgccga actgagcgcg
     8161 ggcagggtgc cgacggcgaa agatgtttcc gatgcagtgt gtgcaatccg caacagtaaa
     8221 cttcctaatc ctaacgtgct tggcaatgtc ggcagtttct ttaaaaaccc cgtcgtcagc
     8281 gcagaaaaag ccgccacctt gttgcagcgg catcctgata tgccgcgcta tccgcagccc
     8341 gacggttcgg tcaaactcgc cgccggctgg ctgatcgacc aatgtcgtct gaaaggcttt
     8401 caaatcggcg gcgcggcggt acatgacagg caggctttgg tcttagtgaa caaaaacaat
     8461 gcctcggcaa acgatgtccg gcagttggcg caacacatca aatttacagt atttgctcgg
     8521 tttcaggtag aattgcacgc cgaacccaat tggctgcctg cttcgttcag cctgtaaatc
     8581 caaggagtat gcccgtgacc cgccccgcca aaatcaatac ttacacacgc atcatcgacg
     8641 ccagccttgc gcttttcaac gaggaaggcg agcgcaacat cagcaccaac catattgccg
     8701 cccacttggg catcagtccg ggcaacctct attaccactt ccgcaacaaa gacgaaatca
     8761 tcgtccaact gttcaaacgt tacagcgaag ccctgctgga atacctcaac gaagccgtgt
     8821 tgccgtctga tgtggaagac tccatcaatt atatggcggg catttacgac gtgatgtggg
     8881 aataccgctt cctattcagc gacgtgaaca ccctgcttgc acgcagtgcc gaactattgg
     8941 gcgaacacaa taccttcacc caagccaaag tctccccgct cttggtcaac ctgctgaccc
     9001 agctcaacgg tctgaacatc atccaagccg accaaaccgc catgaacgac ctcgccgtca
     9061 atatgtggat gatcacgaaa tactggttcg acttcgacag ctccctgcgc ggccgcacca
     9121 agctgaccga agactccaaa gcacgcggcg tccgtcgtac cttaagcctc cttcgtcctt
     9181 atcttttgcc cgaacaccgc gagaaatacg accggaaaat cggcaacggc aacccgtaaa
     9241 cccacagcgt ccgaatcagc cttcagacgg cacttacccg acggtatcag cgaatgcgcg
     9301 cagtcccccc gccccatatc tccatcacag gcctaggtta cctcggcctg ccgctggcac
     9361 aaaagtttta ccaacacggc agccgcgtcg ccgccataaa acgcagcctg acttcggacg
     9421 acatcaacct gcccatacat ctcgacacct tcgacctcgg cagcaccgat gcctttcaga
     9481 cggcattgtg gcggcaccac gccgacaaac ccgtctggtt cttcctgcta ccgccctcct
     9541 cgctgacgca ttacgccgac accgtcaaac aatgggcaga acttgcccgg gcgtgcaacg
     9601 tgcaacacct gattttcaca agcagcacca gcgtttacgg cgatacagcg cgcgaatgcg
     9661 acgaaaccgc cacacccgat ccgcaaaccg agtccgcccg ccaaatcctc gccgccgaac
     9721 aacacctgct cgacagcggc atctccaaca tcgacatcct gcggctgggc gggctttatt
     9781 gcgccgaacg ccatcccgtc agccgccttg ttcaaaagca aaacatcccg ggcggcaacc
     9841 gccccatcaa catcgtccac cgtaatatcg ccgtcgaaag cctgtttcag acggcattta
     9901 accccggcgg caggcggctg aaaaacatta tcgaaccgcg ccacccgaca cgacgcgaat
     9961 tctacacgga agaagccgcc aaactcggcc tgcccgcgct ggatttcgca cccgacgaca
    10021 gcgtgggcaa aatcatccgt accgtttgcg ataacggctt aagcctgtaa aataagcggc
    10081 aacagcaaca aacaggcatt ctccgcccca atcagaaaat atgtccgcct tcctccccat
    10141 catcaaccgc ctgattctgc aaagcccgga cagccgctcg gaacttgccg cctttgcagg
    10201 caaaacactg accctgaaca ttgccgggct gaaactggcg ggacgcatca cggaagacgg
    10261 tttgctctcg gcgggaaacg gctttgcaga caccgaaatt accttccgca acagcgcggt
    10321 acagaaaatc ctccaaggcg gcgaacccgg ggcgggcgac atcgggctcg aaggcgacct
    10381 catcctcggc atcgcggtac tgtccctgct cggcagcctg cgttcccgcg catcggacga
    10441 attggcacgg attttcggca cgcaggcaga catcggcagc cgtgccgccg acatcggaca
    10501 cggcatcaaa caaatcggca ggaacatcgc cgaacaaatc ggcggatttt cccgcgaatc
    10561 cgagtccgca aacatcggca acgaagccct tgccgactgc ctcgacgaaa taagcagact
    10621 gcgcgacggc gtggaacgcc tcaacgaacg cctcgaccgg ctcgaacgcg acatttggat
    10681 agactaacct tcagacggca tccgacatga acagcccttt tcacaacatc ggcatcgtaa
    10741 cccgccccaa cacgcccgac atccaagaca ccgcacacac gctgattacc tttttgaagc
    10801 agcacggctt taccgtctat ctcgacgaag tcggcataaa ggaaggctgc atctataccc
    10861 aagacaccgt cggctgccat atcgtcaaca agaccgaact ggggcaatac tgcgacctgg
    10921 tcgccgtttt aggcggagac ggcacctttc tctccgtcgc ccgcgaaatc gccctgcgcg
    10981 ccgttccgat tatcggcatc aaccaagggc atttgggctt cctgacccaa attccccgcg
    11041 aatatatgac ggacaagcta ttgcccgttt tagaagggaa ataccttgcc gaagagcgca
    11101 tcctgattga ggccgcactc atccgcgaaa gcaaaaccgc cgaacgcgcc atcgccctca
    11161 acgatgccgt cctctcccgt ggcggtgccg gacagatgat tgagtttgaa gtcttcgtca
    11221 atcgggaatt cgtctatacc cagcgttcgg acgggctgat tgtctccacc cccaccggat
    11281 cgaccgccta ttcgcttgcc gccggcggcc ccatcatgca ggcaggatta cacgccttca
    11341 cgctcgtccc catctgcccg caatccatga ccaaccgccc catcgccatt ccagacacgt
    11401 ccgaaatcga aatcctcgtt acccaaggcg gcgacgcgcg cgtccatttc gacggtcaaa
    11461 cccatatcga cgtgcaaaac ctcgaccgca tcaccatccg ccgctaccga aaccccttac
    11521 gcatcctaca tccgaccgac taccaatatt tcaaaaccct gcgccaaaaa ctgcactggg
    11581 gcgaacaatt ggtctgaacc gacccttacc ggaaaacacc tatgaatcca aaaactcccc
    11641 ccgaccatac agaagatgcc gtgcgcctct ccaaacgcat ggcgcaactg gggctttgtt
    11701 cgcgccgcga agccgacggc tacatcgaac agggctgggt aacggtcaac ggcaaaaccg
    11761 ccgtacttgg tcagaaagtt tcaccagcag accgtatcga actgaacaag aaagcccacg
    11821 aacagcaggc ggcacgcatt accatcctgt tgaacaaacc cgtcggctat gtcagcgcac
    11881 aagcggaaaa aggctataaa tccgccgccg aactgattac ccctgaaaat cactgggaag
    11941 gcgataccag ccgcatccgt ttcgatccga aacacaaaat cggtcttgcc cccgccggca
    12001 gactcgatat cgattcagtc ggattgctgg tgttgacgca ggacggccgt atcgccaagc
    12061 agcttatcgg cgaaaacagc ggcagtgaaa aagaatattt ggtgcgcgtg cgcggaaaat
    12121 tggacgaaaa aggacttgcc ttactgaatc acggattgag tttggacggc gagaaactgc
    12181 gtcccgccca agtagaatgg caaaacgaag accaactgcg cttcgtgttg aaacagggta
    12241 aaaagcggca aatccgccgt atgtgcgaac tggtcgggct gcgcgtcgtc gggctgaaac
    12301 gcatccgcat gggcaaggtc aaactcggca ggctgccgcc cggcaaatgg cgttatctcg
    12361 cccccggcga atcgttttaa ataagcatta aaaaatgccg tctgaaaatc cttgcgtttt
    12421 cagacggcat tgccttatgc ccaaataacg gtttcttcca agggcctgcg cgccttcgtg
    12481 gcgatttcct gaacgcggta gccgaatgtc gcggcgacgg acacgcccca ttctgccgca
    12541 tcgaacaaac cgaactgcct ggacaatacg cgttccatat cggcatagtt gaaaccttcc
    12601 accggacagg aatcgatacc tgccatcgcc gcacccgtca tcatgttgcc caacgcgata
    12661 taggtctggc ggcaacacca gtcaaacaag gcgcgcgaat cgtccaaaat cttgatgtcg
    12721 tcggcttgaa acgcccgata cctcgccaaa gattttgcca tggcatccgg ttcggtaacg
    12781 ccgcgccgtt tgaggctttc caacataaac gggctgtcga agcgggcatt tttctttgcc
    12841 aaaaacacca ccaaatgact ggcggtatcc aaagcatccg ccatacccca agaaaacggc
    12901 ttgattgcct gtcggatttc ggggttttga accacaacaa actgccaagg ctccgaaccg
    12961 accgaactgg gcgacaaacg cccgagttct aaaataaact gaaaatcctc ggcactgatt
    13021 ttacgtgccg catcgtaatg ccggcatgat ttgcggtttt taaatgcgga taggacctgc
    13081 tctttgctta atactgtcat cgtgcatcct tttattactt tgattgcaaa ttgatttcaa
    13141 accgatacgg ctctgccgca ccatacaatc cgtcctcgcc atcaagcttc atccggactt
    13201 tacccatctc tgctacggct gggaaaacaa agcggcggca gactcgggaa taacgcccca
    13261 atgcctttca gacggcattt gggcatcatt gcaaacgcgc ctacgggtag gcgatatagg
    13321 cataagccga atggttgtgg atagactcga aattctcgct ctcgacaacg aaactcttga
    13381 tgcgtttgtc ggcgatcagc gaagtagcga catcgcgcac catatcttcc acgaatttcg
    13441 ggttttcgta ggccttttcg gtaacgtatt tttcatcggg gcgtttgagc aggccgtaga
    13501 gttggcagct cgcctgcgcc tccacataat cgatgacttc ctcgataccg acttcggcat
    13561 cggcagtcag gctgacggta acgtgcgaac gctggttgtg cgcgccatat tgggaaattt
    13621 ctttggaaca cgggcaaagc gaggttacgg gaatcatgac cttcatactg tggccgtatg
    13681 ccccgtcttt gatttcgccc gtgaggctga catcataatc cagtaaggac cgaataccgg
    13741 aaaccggggc ggttttcttg cggaaaaatg ggaaagaaac gctgattttg ccggcgcggg
    13801 aatccaaaag cgcgaccatt tcagcagtca gcctgcgcaa ttgtgcaaaa tccaaggctt
    13861 cggtatgttg ctccatcaat gcgacaaagc gcgacatatg cgtacccttc tgctcggcag
    13921 gcaggtaaac cgtcatggtc agacgggcaa ctgtggactg gatgccttct gcagtttgca
    13981 gggtaatcgg aaagcgcagg tctttgatac cgacctgatt gatcggcaga ttgcgcaaat
    14041 ctcggctgga ttgcacgtct gcaatagtgt tcatgagttg tttttcctta atattcatgt
    14101 aattgttgag atgtgtgcat ggtatggcgt ttccaccggg gaatataccg tcaatctgca
    14161 aatgcgagat tatatcactc gcttttagca gctgcattga ttgtttctat ttttcagata
    14221 gtgataaaat cttcgattat tcacatctac ataggcagag accaaatgaa attcgccacg
    14281 aaagccattc attccagcta cgattgcgac gaacacaacc gcgcgctgat gccgccgatt
    14341 tatcaaaaca gtatgttcgc gttgcacgag attggcgaaa atgtgcctta ccgctactcg
    14401 cgcctgagca acccgacccg tcagatttta gaagacaccg ttgccgattt ggaacacggt
    14461 gcggcaggtt ttgcgttttc cagcggtatg gcggggattg atgccgtgtg gcgtaccttc
    14521 ctacaaccgg gcgataccat cgtcgcggtc gccgatattt acggcggcgc gtatgattta
    14581 ttggtcgatg tttatcaaaa atggggggtg aacgttgttt ttgccgattt gggcaatccg
    14641 gataatttgg acgaattgct caaagcgcac aaggtcaaac tggtttggct ggaaacgccg
    14701 tccaatccgc ttttgcgctt ggtagacatc aaagcgcttg ccgcgaaagc caaagcggcc
    14761 ggcgcactgg tcggtatcga caacaccttt gccacgccgt atctgcaaca gcccttggat
    14821 atgggttgcg attttgtgtt ccattccgct accaaatatt tgtgcggcca ttccgacgtg
    14881 ttgatgggca tcgtcgttgc caaaaccaaa gagctggcgc agcctttgca cgatatgatg
    14941 gtgcataccg gcgcggttgc cggcccgatg gactgctggc tggtgttgcg cggcatcaaa
    15001 acactggctc tgcgcatgaa cgcccattac caaaacgcac tcgaaatcgc gcgccgtttg
    15061 gaagcccatc ctgccattga aaaagtgttc catcccggcc tgccgtctca cgaacattac
    15121 gaactggcga aaacacaaat gcccaaaggc ataggcggcg tggttacggt ttatctcaaa
    15181 aacgacacgc gtgaagcggc aaacagcgtg attaaaaaca tgaaactggt caaaatggct
    15241 tccagcctcg gcggcgtgga aagtttggtc aaccattgct attcccagtc ccacagcggc
    15301 gtgccgcata atgtgaaaat ggaaatgggc atcagggtcg gcctgctgcg tttctctgtc
    15361 ggtatcgaag atgtagatga tatttggaat gatatttccg ccgcactgga tacgactttg
    15421 taaaccgtaa aaatgccgtc tgaaaccatg gtttcagacg gcatttcaat taacccggcc
    15481 gaaaatcaac gcttcagcat cttggccgcc tcaatggcat aataggtcaa aatcccatcc
    15541 gcgcccgcac gtttgaatgc cagcaggctt tccaaaacca ctttatcgcc atccagccat
    15601 ccgttggcaa ccgccgcctg tagcatcgca tattcgcccg aaacctgata ggcataagtc
    15661 ggcacaccga actcgtcctt cacgcggcgg acaacgtcca aatacggcaa accaggcttg
    15721 accattacca tatccgcacc ttcctgaatg tccaacgcca cttcgtgcaa cgcctcatcg
    15781 gtatttgccg gatccatctg gtaggttttc ttgtccgcct tgcccaaatt gcccgaactg
    15841 cccaccgcat cacggaaagg gccgtaaaat gcagaagcat atttggcgga atacgccata
    15901 atcagcgtat ggatatgccc ggcatcctcc aacgcctcgc gaatcgcacc gatacgcccg
    15961 tccatcatat cggaaggagc aaccacctgt gcgcccgctt cagcgtggca caaagcctgc
    16021 ttgaccaaaa cctctacggt ttcatcgttc atcacataac cgttttcgtc cgtcagcccg
    16081 tcctgaccgt gaaccgtata aggatcgagc gcgacatccg tcataatgcc cagttcagga
    16141 aacctctcgc gcaaggctcg gacagttgac ggcacgagtc cttcgggatt gtacgcctcc
    16201 tgcgcacgct cagttttgtt tgccgtaacc acgggaaaga gtgccaacat cggaataccg
    16261 agctttaccg cctcttccgc cgtaaacagc agcctgtcca aactctgacg cttcacgccc
    16321 tgcatagaag gcacatcctc ctcgcgcgcc gacccctcca atacgaacac cggataaatc
    16381 aaatcatcgg cggtcagcgt gtgttcgcgc atcaggcggc gtgaaaaatc gtccctgcgc
    16441 atacggcgca tacgcgaagc cggaacattg cggtaaggaa actgcataag ccctccaatc
    16501 atcctgtcaa caattcaaac catacggaag ccgccgcaac ttgcagacag catcgggcgg
    16561 caatcaaaat ccgttttcac cggaaagggt ttcggcccgc cgaaatgccg cgccgaagga
    16621 cggcgtcccg cccattaaag aacaatagca aaacaacagc ttcaggctgt cagccttcga
    16681 tattcttacg ccacaatacc aaaagtttcc cgatatgctg aacaggttgc gcgtcaaccg
    16741 cctcacataa ggcagtgcag atttcgatac gttcggcacg gtcgtcgccg aatacgcgca
    16801 ctttaatcag ctcatgcgcc gtcaatgccg catcggtttc cttgatgacc gcgtccgtca
    16861 gaccctgctg accgaccatc acaacaggat ggagatggtg cgcgcgcgct ttcagttcca
    16921 aaatttcttt ggtgttcaat ttggtatccg tcattttcct actgcttgaa taaaaagaat
    16981 aatgcggcat tgtacgcgat ttggcacgac atcggcaaaa ttaacgtaca atacgcggtt
    17041 tccattccga cccgcgaacc actatggctg tacgttccaa atcctcaaaa gcgtggctgc
    17101 acgaacacgt caacgaccac tacgtccata tggcgcaaaa agacggctac cgcgcccgtg
    17161 ccgcatacaa acttttggaa atcaacgaaa aagacaaatt aatcaaaccc ggcacggtac
    17221 ttgccgactt gggcagcgca ccgggaagct ggtcgcaggt tgccgccaag ctgacgggta
    17281 cttccggagc agttttcgcc ttggacatcc tgcctatgga agccataggg ggcgtctcct
    17341 tcattcaggg cgacttccgc gagaacgacg tactggcaca attcgaaacc ttgttggaca
    17401 accgcccgct cgaccttgta atttgcgata tggcgcccaa tatgtcggga aacgccgtaa
    17461 gcgatcaggt acgcagcttt tatctgtgcg aactggcttt agacttcgcc tcgcaacacc
    17521 tgaaaaccgg cggcagcttt ttggtcaaag tctttcaggg tgcaggctat caggaataca
    17581 tggcagccat gcgcgaaatt ttcggcacgg tgcagacgcg caaacccgaa gcctcgcgca
    17641 atcgctccag tgagatttat ttattgggca aaaataaacg ctgacaatac agacggcgtg
    17701 ctttacaatc atttccgttt tacacctcaa ttatggagcc ttgctaagtg gggaacacct
    17761 ttaaatcaat ccttgtctgg gtcgccttgg gtatcggcct gatggctgcg ttcaacgctt
    17821 tagacggtaa aaaagaagac aacgggcaaa tcgaatattc tcagttcatc caacaggtca
    17881 acaacggcga agtatccggc gtcaacatcg aaggatccgt cgtcagcggc tacctgatta
    17941 agggcgagcg caccgacaaa agcaccttct tcaccaacgc gcctttggac gacagcctga
    18001 ttaaaacact gctcgacaaa aacgtccgtg taaaagtaac gccggaagaa aaaccgagcg
    18061 cgctggctgc cctgttttac agcctgctgc ccgtcctgct gctgattggc gcgtggttct
    18121 actttatgcg tatgcagacg ggcggcggcg gcaaaggcgg cgcattctca ttcggcaaaa
    18181 gccgcgcccg cctactggac aaagatgcca acaaagtgac ctttgccgat gtcgccggct
    18241 gcgacgaagc caaagaagaa gtgcaggaaa tcgtcgatta cctcaaagcg ccgaaccgct
    18301 atcaaagcct cggcggtcgc gtgccgcgcg gcatcctgct ggcgggcagc ccgggtacgg
    18361 gtaagacgct tttggcaaaa gccattgcag gcgaagccgg cgtgccgttc ttcagcattt
    18421 caggttccga ctttgtcgaa atgttcgtcg gtgtcggtgc aagccgcgtc cgcgatatgt
    18481 tcgagcaggc gaagaaaaac gccccctgca tcatctttat cgacgagatt gacgcagtcg
    18541 gccgccaacg cggcgcaggt ttgggcggcg gcaatgatga gcgcgagcaa acattaaacc
    18601 aattgttggt tgaaatggac ggttttgaga gcaatcagac tgtaattgtg attgcggcaa
    18661 ccaaccgccc cgacgtactc gatcctgcgc tgcaacgccc cggccgtttc gaccgccaag
    18721 tggttgtccc cctgccggac atccgggggc gcgaacagat tttgaacgtc cactctaaaa
    18781 aagtgccttt ggacaaatct gtggatttat tgtccctcgc gcgcggcacg ccgggttttt
    18841 ccggcgcgga tttggcgaac ttggtcaacg aagccgccct gtttgccggc cgccgcaata
    18901 aagtcaaagt cgatcagagc gattttgaag acgccaaaga caaaatctat atgggtccgg
    18961 aacgccgcag tatggtgatg cacgaagacg aaaaacgtgc gacggcgtat cacgaatccg
    19021 gacacgcgat tgttgccgaa agcctgccct ttaccgaccc cgtccacaaa gtaaccatta
    19081 tgccgcgcgg acgtgcgctg ggtctgactt ggcagcttcc ggagcgcgac cgcatcagta
    19141 tgtataaaga tcagatgttg agccagctct ccatcctgtt cggcggacgg attgccgaag
    19201 acatcttcgt cggacgcatc tccaccggcg catcaaacga ctttgaacgc gcaacccaaa
    19261 tggcgcgcga aatggtaacg cgctacggca tgagcgacaa aatgggcgtg atggtttatg
    19321 cggaaaacga aggcgaagtc ttcttgggac gcagcgtaac ccgttcgcaa aacatttccg
    19381 agaaaaccca gcaggacatc gatgcggaaa tccgccggat tttggacgag cagtatcagg
    19441 ttgcctacaa aatcctcgat gaaaaccgcg acaagatgga aacgatgtgc aaagccctga
    19501 tggaatggga aaccatcgac cgcgatcagg tactggaaat catggcgggc aaacaaccca
    19561 gcccgcccaa agattacagc cacaacctgc gcgagaatgc ggacgcggcg gaagataacg
    19621 cgccgcacgc tccgactcgg gaagaaaccg aagcacctgc cccggcagac accgcttcga
    19681 cagagtccga gcagcagcct gaaaacaagg cttaacttcc cgaacaaacg gcagcccgca
    19741 agctgccgtt ttcccatccc gttttcagac ggcattttcc actcaatgcc gtctgaaacg
    19801 ccaaagccgt atcggttttt acgaatctgc gatatggcgg tttaaattga aatcagaacg
    19861 gggcaaggct gtaccggttt aaaattaaac cgctataata ccgcccttcg aatacacgcc
    19921 cgcattggtg atgcccgtga aaaaagttga aaaaaacatc ttggtgctgc acggcgcgga
    19981 caaaatgttc gagctggtcg acaaggttga ggattacccg cactttctgc cgtggtacag
    20041 caagaccgaa gtcatcgggc gtagcggcaa cgaactgaag gcgcggctgt ttatggatta
    20101 tatgcacgtt cgccaatcgt ttgccacgca caaccgcaac attccgggca gggaaatccg
    20161 tatggaactg ctcgaaggtc cgttcaaaac cttacgtgga acgtggaaat ttatcgattt
    20221 gggcgacgat atgtgcaaaa tcgaattcaa tttggaatac gatttttcca atgccgtttt
    20281 gtccgcctta atttcccccg tcttcaacca cctttccgcc acgctggtcg aagcgttcgt
    20341 caaagaggca gaccgccgtt atgcttgaaa ttgagattgt gtacgggctg cccgaccgac
    20401 aggttttgaa aaccatgcag cttgccgagg gaacaaccgt ccgcgccgcc gcactgcaaa
    20461 gcggtttgga cggcatattt gaagatttaa acctgcattc cgcgcctttg ggcattttcg
    20521 gcaaagccgt caaagacgac acgcccctgc gcgacggcga ccgcatcgaa gtgtaccgcc
    20581 cgctgttgat cgaccccaaa gaagcgcgcc gcaaacgcgt tcaaaatcaa gaagaataac
    20641 catgccgtct gaagccttca gacagcattc gacagaaaca cggaaaatat catgtcaaac
    20701 aaaatcaaaa tgcttgtcgg attgggcaac cccggcaaag aatacgaaca aacccgacac
    20761 aatgcgggtt tttggttcct cgacgaactg gcgtggaaat ggaaggcttc atttaaagaa
    20821 gaaaaaaaat tcttcggcga agtcgcccgt gccgccctgc ccgacggcga cgtttggctg
    20881 ctcaaacctg ccacgttcat gaaccgttcc ggacaggcag ttgccgcgct tgcacagttc
    20941 tacaaaatca aacccgaaga aatcctcgtc gtccacgacg aactcgacat tccctgcgga
    21001 cggattaaat tcaaactcgg cggcggcaac ggcggacaca acggcttgaa agacattcag
    21061 gcaaaactcg gcacggcaga ctattaccgc ctgcgcctcg gtatcgacca cccgggcgac
    21121 cgcaacctcg tcgtcggcta tgtcctgaac aaacccagta cggaacaccg ccgacagatt
    21181 gacgatgccg tcgccaaatc cctgcaagcc atacccgaca tccttgccgg caaatgggaa
    21241 gaagcaaccc gcttcctgca cagcaaatga cccgatgccg tctgaagccc tttcagacgg
    21301 catgttcccg atttccatat ccgaacagtc atgaccgaac tcaagcagct tatccaaacc
    21361 gaatccatcc ccgtcatcga agaaaccctc gatttcctgc tgtacgaatg cagcatcgac
    21421 gacgcaccat ccgccgaaga agtggcacaa tggcgcgaca tacttgccgc acgcggcggc
    21481 aaattcctgc gcctgtccaa aatctgccaa acgtggctgg acgaggaggc ggcatgaagc
    21541 tgccgcgcaa ccgcttcagc ctgctttccg cattgtggtt tgccggcggc atctattcgc
    21601 tgctcttcaa agctgccgac accgcgccgc cgccgtttcc gcatttcgac aaagcagcac
    21661 accttgccct gtttttcgca caaatctggc ttttgaccaa agcattcaaa accggaaaac
    21721 ttcccatccc ctaccgcagc ctgatggtct ttgccctctg tttcgccctc ttcagcgaat
    21781 gcgcgcaggc atggtttacc gcaacgagaa ccggcagttt gggcgatgtt cttgccgata
    21841 tggcaggtac ggttctcgca ctctttgccg cccgcgccgc cgaccgcccg gactgaatcg
    21901 gtttatttcc cccaaacagg atgcacctct tcccgataca tcctattttt ccccttacat
    21961 atcaatccca tctcataaac aaaaccgaca aatcgtttac aatatattta cactacatca
    22021 gattacaaat atactcgaac cagttgtaga atcggcggtt ccacaaaccg tttcggattg
    22081 cacgacacaa aagaaaaacc gattttattg ccttaaagga gtattcatga acctgcatgc
    22141 aaaggacaaa acccagcatc ccgaaaacgt cgagctgctc agtgcgcaga agccgattac
    22201 cgactttaag ggcctgctga ccaccattat ttccgccgtc gtctgtttcg gcatttacca
    22261 catcctgcct tacagccccg atgccaataa aggtatcgcg ctgctgattt tcgttgccgc
    22321 actttggttt accgaagccg tccacattac cgtaaccgca ctgatggtgc cgattctcgc
    22381 cgtcgtactc ggtttccccg acatggacat caaaaaggcg atggctgatt tttccaaccc
    22441 gattatctac atttttttcg gaggcttcgc gcttgccacc gccctgcata tgcagcggct
    22501 ggaccgtaaa atcgccgtca gcctgttgcg cctgtcgcgc ggcaatatga aagtggcggt
    22561 tttgatgttg ttcctcgtta ccgcctttct gtccatgtgg atcagcaaca ccgccaccgc
    22621 cgcgatgatg ctgcctctag caatgggtat gctgagccac ctcgaccagg aaaaagaaca
    22681 caaaacctac gtcttcctcc tgctcggcat cgcctattgc gccagcatcg gcggcttggg
    22741 cacgctcgtc ggctcgccgc ccaacctgat tgccgccaaa gccctaaatc tggacttcgt
    22801 cggctggatg aagctcggcc tgccgatgat gctgttgatt ctgcccttga tgctgctctc
    22861 cctgtacgtc atcctcaaac ctaatttgaa cgaacgcgtg gaaatcaaag ccgaatccat
    22921 cccttggacg ctgcaccgcg tgatcgcgct gttgattttc cttgccacag ccgccgcgtg
    22981 gatattcagc tccaaaatca aaaccgcctt cggcatttcc aatcccgaca ccgttatcgc
    23041 cctgagtgcc gccgtcgccg tcgtcgtctt cggcgtggcg caatggaagg aagtcgcccg
    23101 caataccgac tggggcgtgt tgatgctctt cggcggcggc atcagcctga gcacgctgtt
    23161 gaaaacatcc ggcgcgtccg aagccttggg acagcaggtt gccgccacct tttccggcgc
    23221 gcccgcattt ttggtgatac tcatcgtcgc cgccttcatt atttttctga ccgagttcac
    23281 cagcaacacc gcctccgccg cattgcttgt accgattttc tccggcatcg ctatgcagat
    23341 ggggctgccc gaacaagtct tggtattcgt catcggcatc ggcgcatctt gtgccttcat
    23401 gctgccggtt gccacaccgc ctaacgcgat tgtgttcggc acgggcttaa tcaagcaacg
    23461 cgaaatgatg aatgtcggca tactgctgaa catcctctgc gtagtattgg ttgctctgtg
    23521 ggcttatgct gtactgatgt aaaccatcga cctaaacaac aagaccgtct gaaagaatat
    23581 ttttcagacg accttgaagt ttgtcgttca gacacaattt gtcgaatcat tcaaaaccgg
    23641 attctaacga aaggaaaccc atgattatcc tgcacaccaa caaaggcgac atcaaaatcg
    23701 aactcgattt cgacaaagcc cctgttaccg ccaaaaactt cgagcaatac gtcaaagacg
    23761 gcttctacga cggcgtaatc ttccaccgcg tcatcaaagg cttcatgatt caaggcggcg
    23821 gcatggatga aaacatgaac gaaaaagaaa cccgcgatcc gattcaaaac gaagcgtcca
    23881 acggcctgcc caacgataaa tacaccatcg ccatggcacg cacttccgac ccccattccg
    23941 ccagcgcgca attcttcatc aacactgccg acaacgcttt cctgaacttc cgttctaaag
    24001 agctgtacgg caaaaccgtc gtccaagact ggggctatgc cgtattcggt aaagtcgttg
    24061 acggttttga tgttgtcgat gccatcgaag gcgtatccac caaacgccac ggctaccatg
    24121 acgacgtacc gagcgaacct gtcgtcatca ttaaagccga agcggtataa accggcaatc
    24181 cgaaagcagc ctgcacaaag gctgcttttt ttgtttcagg cggcataaaa tccaagcaca
    24241 tatgccgtct gaacacctcc cgcaagcctt cggacaatgt tgcaacgtgt taaaatagcc
    24301 tcctttcctg aaaccacaac aaggaaacca tcatggcaaa tattgcccgc gacatcttca
    24361 aagcctacga catccgaggc attgtcggca aaaccctgac cgacgatgcc gcctatctca
    24421 tcggcagggc catcgccgcc aaagccgccg aaaaaggcat gacccgcatc gcgctcggac
    24481 gcgacggacg cttgagcggt cccgaactga tggagcacat ccaacgcggc tttaccgaca
    24541 gcggcatcga cgtcctcaac gtcggtatgg tcgccacgcc catgctctat tttgccgcca
    24601 tcaacgaatg cggcggcagc ggcgtgatga ttaccggcag ccacaatccg cccgattaca
    24661 atggtttcaa aatgatgctc ggcggcgaca cgctcgcagg cgaagccatt caagaacttt
    24721 tagccattat tgaaaaagac ggttttgttg ccgccgacaa acaaggcaac gtaaccgaaa
    24781 aagacatctc cggcgaatac cacaaccaca tcgtcggcca catcaaactc aaacgcccga
    24841 tgaacatcgc tatcgacgcg ggcaacggcg tgggcggcgc gtttgccggc aaactctata
    24901 aaggcttggg caacgaagta accgagcttt tctgcgacgt ggacggcaat ttccccaacc
    24961 accatcccga cccatccaaa cccaaaaacc tgcaagattt gattgccgcg ctgaaaaacg
    25021 gcgatgccga aatcggcttg gcgtttgacg gcgatgccga ccgcttgggc gtagttacca
    25081 aagacggcaa catcatctat ccagaccgcc aactgatgct tttcgcgcaa gacgtgttga
    25141 gccgcaatcc taaagccaaa gtaattttcg acgtcaaatc cacccgtctg cttgcgcctt
    25201 ggattaaaga acacggcggc gaacctgtga tggaaaaaac cggccacagc tttatcaaat
    25261 cctccatgaa aaaaaccggc gcgccggttg ccggcgaaat gagcggacac atcttcttca
    25321 aagaacgctg gttcggcttc gacgacggtc tgtacgccgg cgcacgcctc ttggaaatcc
    25381 tgtctgcctc cgataatccg tccgaagtgt taaacaacct gccgcaaagc atttccacgc
    25441 ccgaactcaa catcgccctg cccgaaggca gcaacggcca tcaggttatc gacgaactcg
    25501 ccgccaaagc cgaatttgaa ggcgcaaccg aaatcatcac catcgacggt ctgcgcgttg
    25561 aatttcccga cggcttcggt ctgatgcgtg cttccaatac cacgccgatt ctggtgttgc
    25621 gttttgaggc ggatacgcaa gaagccatcg agcggattca aaaccaattc aaagccgtca
    25681 tcgaaagcaa tccgaatcta atctggcctc tgtaaacaca ggaaaaatgc ttaatcaaat
    25741 cttggtagat tggatttggc ttaaaaatct ccgcgtccgt tcgtgtttgg ggtggtcgaa
    25801 caactctttc gggctgccct gctctacgat aacgccgccg tccatcacga caacggtcgt
    25861 ggcaacttcc agcgcgaact tgatttcgtg ggtaacgacg accatcgtcc aaccttcccg
    25921 cgccaattcc ttcatggcgt tcaacacgtc ttgcaccaat tcagggtcga gtgcggaagt
    25981 gggttcgtca aacaacatca gctcgggctg aatcgccaat gcgcgggcaa tgccgacgcg
    26041 ctgctgctga ccgccggaaa gctggtaggg atacaaatcc actttgtcgc ccaagccgac
    26101 tttttccagc agtttcagag cctcttcgcg cgcttgggcg gcaggcttgc cctgtacggc
    26161 aaccggtcct tccattacgt tttccaaggc ggttttgtgc ggaaagaggt tgtattgttg
    26221 aaacaccatg cctgatttgc ggcgcagtgc caaaatatcg tgtttgcttg gttttttaga
    26281 aaaatcgatt ttcagcggtc gctcgttgtc gaactcgatt tgtccgtctt cgggcatttc
    26341 caacgcgttt aggcatcgca gaaacgtcgt tttgcctgag ccggaaggcc cgaggataac
    26401 gaccacctgc cctttgccca catccaaatc gatgccgcgc aaaatagtgt tttcgccgaa
    26461 ggtcttatgg atattgcgga ttttaatcat aacaactcct tatttggcga cataacggtc
    26521 gaaacgtttt tccaaacgtg cctgaatcag gaacagaacc ttgcagaaac accagtaaac
    26581 caatgcggct tcaatataga cgggcaaaaa gtcgtaagtg cggtttgccg tttcctgcgc
    26641 gacgcggaac aattcagtta ccgttaccac cgctgcgagc gaggtgtttt tgaacaagcc
    26701 gataaactcg ttgctcaaag gcggcacggc aacgcggaat gcctgcggcg cgacgatgcg
    26761 gcggaacgtc tgcatatagg tcataccgat ggagaaacct gcttcccatt ggcctttagg
    26821 tacggacaaa attgccgcgc gtatggtttc ggaagcgtat gcaccgacat tgagcgagaa
    26881 gccgataatg gcggcgggaa tcggatcgat atagataccg acggacggca gcccgtaaaa
    26941 cacaatcaca agctgcacca acagcggcgt accgcgaatg acggaaatat aaaattccac
    27001 caatttcagc aggattttcc gcgcaatgcc gccggcgggc ataatccgca ccaaagccac
    27061 ggctacggca ataaccatac cgataacgaa agaagctgcc gccaaaggca gagacaccgc
    27121 gaagccggct ttgaccatag gcaaaaacgc gctgacaatc atatcggcgc gtgtttccgt
    27181 cataaacggc agcgaagcaa ggaaattatt gaacactgat gtcttttccg aagaattgtt
    27241 cgcccagttt tttcagcgta ccgtcggctt tcagctcgtt gattgccgta ctgaatttcg
    27301 ccacggcttc gtcattgccc ttgttgacaa tcaggccgga accgactttt tcatcggcag
    27361 gtgcggacca aacgattttc acgcccgcat tcgggttttt cttcagatag tccaaaaccg
    27421 ccaattcgtc gttcagggtt gcatcggcac gtttttgttc aatcagggtc agcgattgcg
    27481 ccaaaccgtc cactgccacc aaatctgcgc ctgcagcttt ggctttttcg ccgtagttgc
    27541 tggtcaggga ttgtgcggtt ttcacgcctt tgatgtcgtc gatagatttg atgttgctgt
    27601 cgttacgggc aaccaatacg gcaccgctcc agctgtaagg atcggatttg tcgaatgtcg
    27661 cttggcgttc ggggctggtc agaccgactt ggtttgccac cacgtcgaaa cgccccgcct
    27721 tcaaacccgc catcatcgaa tcccattgcg tttctttaaa ctcgactttc acgcccagtt
    27781 tttccgccac ggcgcgggtt acttccacat cgtaaccggt cagtttgccg tccttgtcgt
    27841 ggtaggtaaa cggtgcgtaa gtgccttccg tgccgacggt aaccgtgcct ttattgttga
    27901 tgcgctcgat taaagaaccg gaaactgccg attgtgcagg cgcggaagat gctccgctgc
    27961 cgccttccga accgccgcag gccgccaaaa ccaatgcggc aataccgccg agtacgaatt
    28021 ttttcaacat catcctctcc tgtaaaaagt gtgcaagtgc ggcattctaa gtgaaattgc
    28081 ggcaaacaca aagaatcctt tttttatatg gttattccaa atcggaatgg aaaagatatg
    28141 ccgaagccgc cggaagcgga aataaagggg gcgggaaagg cggtgggcgg cacgaaaccg
    28201 aaaagcggca tcaggtatgc aaacggcgga ttcacgcacg ccgttccggc aaaaatccgc
    28261 ctgccgattc ggtgctataa tccatccgaa acagatgaca ccaaaaagga acatctcatg
    28321 aacacgcccc aatccgccat cattcccgac cacgcccaag ccggcatctt tatcgaagcc
    28381 gacttcgccg ccaaccgcct caacgatatt aaagccgcct gccgcgcttc gctcgacgcg
    28441 ttaactgcct tgaaagcccg ctttccggac gatattttgg gtctgaccat cgccttcggc
    28501 agcaaagcct gggcaacatt cggacatacg gacgaaggca gtgaaatcaa acccttctcc
    28561 gaaatgggca acgggcttgc gccgtccacg cagcacgata tgtccatcca catccaatcc
    28621 ttccgccaaa acgccgccta cgcgcttgcc caatccgttt taggcgcgtt cggcgacagc
    28681 atatgcgtcg cgtccgaaga acacggtttg cgcctgtatc aggatcgcgg actggacggt
    28741 ttcgtcgacg gcacggaaaa cccgcagggc gatgaaaatg tccgcgaagt cgccatcatc
    28801 cccgaaggaa aacccgatgc gggcggcagc tatgtcctgc tgcaaaaata cctgcacgat
    28861 ttgaaaaaat gggatgccgt ccccgtcgcc gaacaggagg cctcggtcgg acgcggcaag
    28921 gaaaccgacg acgaattcgg ccgcgatgtc cgcctgcccg attcgcacct cggccgcgtc
    28981 aacctgaaag aaaacggagt cggcctgaaa atcgtccgcc gcagcctgcc cttcggcaaa
    29041 atcagcggcg aacacggttt gatgtttacc gcatactgcc gcacgctgca caatatcgaa
    29101 gcgcaattat tgagtatgtt cggcgacacg gatggcaaaa ccgacctgct gctccggcac
    29161 ctctccgccg ccgtttcggg cggatactac tacgcgccgt ctgtcgaacg cctgcaaaac
    29221 ctctaagcca gacgatgccg tctgaaaccc tttttcagac ggcattttcc cgttttaccg
    29281 tccaaccgtt ttccgagcgc gcactatgtc tgcacccatc caagcatttg acccgctgac
    29341 cgtccccatt gccggcacca acctgattga ggcctctgcc ggcaccggca aaacctacgg
    29401 catcgccgcc ctgtttacgc gcctgatcgt attggaacaa aaaaacgtcg agcgcgtatt
    29461 ggtcgttacc ttcaccaaag ccgccaccgc cgagttgaaa acacgcctgc gcgcacgttt
    29521 ggacgatgtg ttgcaggttt tagaaagtaa agaaattgcc aaacttggag acgacacgct
    29581 ttcagacggc atcgccgcct actgcgccga acaccacaaa ggcgacacct tcctgcccgc
    29641 actcttaaaa caggctttgc aaaaagaggg ccggacgcgt ctgattgtcc gcctcaaggc
    29701 cgccatcggg caattcgaca acgccgccat ctataccatc cacggcttct gccaacgtat
    29761 cctgcgcgac tacgccttct tgtgccaagc accgttcgat gtcgaactga ccgaagaaga
    29821 cggcgaccgc ctgcttatcc cggcgcaaga tttttggcgg gaacgcgtca gcaatgatcc
    29881 ggtgcttgcc gcattggcgt ttaaacgcaa agctgtgccg caaaccgtcc ttgcccaaat
    29941 ttcgcgctat ctttcccgcc cgtacctgaa tttccgccgt ccgcaggcgg atttgaaaca
    30001 ggcgcagcgc aacgccgaaa cctcatggca aaccatctgc cgcctgctgc ccgagctgga
    30061 agccggcttt tggcgcatcc atcccgacct caacggcaac agttaccgca aaaacagctt
    30121 cggcaacctt tttaaagaac tggcacaaaa atccgccgcc ggacaactgc cctttctgga
    30181 caaagacacg cacgacagac tcttgaaact tgcgtccgac aaactcgaag ccgcccttaa
    30241 aaaaggcaaa acgcccgatg cggcagcatt tgccgaattg cagaaactgg cagacttcgg
    30301 gcgcgatttg aacgcactcg aagaagcgga agaagcaaca atgatccggc tgcaactgga
    30361 tttaatcgga tacctcaacc gcagccttgc cgagatgaaa aaatcgcgcc gcgaacgcgg
    30421 tttcgacgac ctgctgctcg atgtccacac cgcgctgacc gacaatccgc acgccgaaac
    30481 cctcgcccgc gccgttgccg aaaactggga aaccgcgctg atcgacgagt tccaagacac
    30541 cgacccgctg caatatgaaa tcttccaaaa gattttcatt gcccaaaacc gcccactgtt
    30601 tctcgtcggc gatcccaaac aggcgattta cagctttcgc ggagcggaca tttacgccta
    30661 cctgcaagcc gccggagacg cgcggcaccg ctacacgctc gccaccaact accgcagcca
    30721 cgccgcgctt atcggcagca taggcgcgct gttccgcctc aaagaacgcc cgttcgtttt
    30781 ggaaaacatc ggctattcgg aagtcggtgc ggcgcgtgcc gaaagcaggt tgtcccccga
    30841 acgtcctgcc gtacaggttc gttggctgca cgaaaacgac aatgaaaaag ccaacaaaga
    30901 cgttttgcgc cgccgtgccg ccgactattg cgccgacgaa atcgcccacg cgctcaacga
    30961 agccgccgga ggccgtctga atttcaaagg ctgcccgttg cagtcgggcg atattgccgt
    31021 gctggtacgc acgcacaacg aggcggtgat ggtttccgcc gccctgaaaa aacggcaggt
    31081 gcaaagcgtc ctgctttcgc gcgaatctgt gttcgcctcg cccgaagccg ccgccctgtc
    31141 cgcactcatc ggcttctggc tcgaaccgcg ccgcgccgga acgctgcgct ttgtcctgac
    31201 aagcggcata ttcggttatg acgcgcagca attgcacgac ttcaaccaaa acgaaagcga
    31261 gattttgcat tgggcggaat ctgcccgaac cgcactcgac aactggaatc aatacggcat
    31321 tttcgccgct atgcagcaat tttcccaaac acacggcatc gaaacgcgcc tcttaagccg
    31381 gaacaacggg cgcagcctga ccaactattt ccaactgctc gaactgcttg ccgccgaaga
    31441 cgcgcaaaac cgcaacccag ccgcgctgca caaatggttg cgcgaccaaa tcagcctggc
    31501 cggcaacaac agcggcgaca accgcgccat ccgtctggaa agcgacgaag atttggtcaa
    31561 aatcgttacc atgcacgcct cgaaaggttt gcagtatccg ctggtgtact gcccgtttgc
    31621 gtgggacgcg caagataccg ggccgtccga ctggcaaatc ctccaccaaa gcgcaaaccg
    31681 aaccgaactg ttggcaaagg cgcaactgtc ggaagacgaa cagaaacaat acgccgatga
    31741 agaaatggcg gaacgcctgc gcctgcttta tgtcgcactg acgcgtgccg aggaacagct
    31801 caacatctac gccgcgtact ccaccaatac tgccgacaac cccctcgcct acctgattga
    31861 aggctcgccc caagacagcc gtgaaaccgt ccgccgtgcc tatgcgtgtg aaaaagacgg
    31921 catcgcgatg ctcaaacgca actggcggcg cgtggcggac aacgcccctt ccggcacaaa
    31981 tttcgccttc accgaaaatg cgccgccccc tgccgcctat cgcagcaacg ccggtcaaac
    32041 cgccgaattt gccgcaaaca gcattcccga acgcggattc cgatttgtcc gccacactag
    32101 ctttaccgcc ttaagccgcc atacccaaac gcccgacggc ggcgaagaag atgcctgccc
    32161 gtccttggat gccgccgaaa cctcggtgcc ggcgatgccg tctgaaacgc cgacggcttc
    32221 agacggcata tcgatacacg attttccgaa aggcacgcag gcggggctgt gcctgcacga
    32281 aattcttgaa gatttcaaat tcggacaagc agccgccgga caggaaaccc tcattgccga
    32341 caagctgaaa aaatacggtt ttgaagaaat atggctgccc gccgttgccg aaatggcgga
    32401 agcctgccgc aaaacgccgc tgacgggggc atacgacctg tccgacatct cacccgagtg
    32461 ccgctgtccc gaaatgggct ttaccctcca caccgaagac ttcagcctca aacgcctgcg
    32521 cgactggttt gcccgcgacg acatcaggct gcccgaagtc tgccgtgccg ctgccgaaac
    32581 gctcgacttc cacaccgtca acggcttttt aaacggcttt gtcgatatgg tctgccaaga
    32641 ccccgacggc aatatctgcg tcatcgacta caaatcaaac cacctcggta cggacgcatc
    32701 cgcctacacg caacaggcaa tggacgaagc cgtcgcacac caccactatt accttcaggc
    32761 actgatttac gccgttgccg ccgcacgcta cttcaagctg cgcggacaac cgcccgccgc
    32821 cgtttccgtc cgctacctgt ttttgcgcgg attggatggc aaaggcggcg gcgtttggcg
    32881 ttgggacata gatgccgccg ctttggaaca gataaaataa cttcccgtcc tttcggacaa
    32941 caaccgcagg aaaaccctat gaatatcaaa cacctgatta ccgccgcact cattgcctca
    33001 gccgcctttg ccgcgcaggc agccccgcaa aaacccgtat ccgccgccca aaccgcgcaa
    33061 catccggccg tttggatcga tgtccgttcc gaacaggaat ttagcgaagg gcatttgcac
    33121 aacgcggtca acatccccgt cgaccaaatc gtccgccgca tacacgaagc cgcgcccgac
    33181 aaagacacgc cggtcaacct ctactgccgc agcggacggc gtgccgaagc cgcccttcaa
    33241 gagctgaaaa aagcaggtta tacaaatgtt gccaatcacg gcggttatga agacctgctc
    33301 aaaaaaggga tgaaatgacg caatgccgtc tgaaaggaca ggctttcaga cggcatacgg
    33361 cgttccggca cgcggcgcaa catcgggcgc ggcgcgcgcc gccccgtccg aagcctgata
    33421 aacaaaccga taaggaacaa tgatgtttca cgacacataa agcaccgccc tatgtgttgc
    33481 cctgatttgg aaagggttac acccctcccg aataaagtct gattctaccg tttcaaccaa
    33541 aaaggaaaaa ggaaatacga tgaaacacat actccccctg attgccgcat ccgcactctg
    33601 catttcaacc gcttcggcac accctgccgg caaaccgccc acccaaaacg aaaccgctat
    33661 gaccacgcat accctcacct cgaaatacag ctttgacgaa accgtcagcc gccttgaaac
    33721 cgccataaaa agcaaaggga tgaacatttt tgccgtcatc gaccatcagg aagccgcccg
    33781 ccgaaacggc ttaacgatgc agccggccaa agtcatcgtc ttcggcacgc ccaaagccgg
    33841 cacgccgctg atggtcaaag accccgcctt cgccctgcaa ctgcccctgc gcgtcctcgt
    33901 taccgaaaca gacggcaaag tacgcgccgc ctataccgat acgcgcgccc tcatcgccgg
    33961 cagccgcatc ggttttgacg aagtggcaaa cactttggca aacgccgaaa aactgataca
    34021 aaaaaccgta ggcgaataag cccgtcgccg acatatggcg gatggaaatc aaatgccgtc
    34081 tgaaacccga tttcagacgg catttccttt caatccctat cttcccgaca aatatcaatg
    34141 gcttcctgca aactcgaaac gccgtagatt ttcaggttcg gaaactcttt ggcgttgcgc
    34201 ggcatattgg ctttggggac gatggcgcgt ttgaagccga gtttttccgc ttctttgagc
    34261 cgctcttgtc cgcgcgcgac ggggcggact tcaccgctca aaccgatttc tccaaatgca
    34321 accatttttt cgggcagcgg gcggttgcgg aagctggaaa gcatcgcgag gatgactgcc
    34381 aaatccgccg ccggttcgcc gattttcacg ccaccgacgg cgttgaggaa cacatcctga
    34441 tcgaaacagg cgatgccgcc gtgtcggttt aacacggcga gcagcatcgc gaggcggttt
    34501 tgttccagtc cgacggtaag gcgtttgggg gtgaatccgt gcgcgtcatc gaccaatgcc
    34561 tgaatttcaa ccaaaagcgg tcggctgcct tcctgcgtaa ccaaaacgca cgaaccgggc
    34621 gtgtcgtcgc ggtagctggc aaggaagatg gcggacgggt tggacacacc tttcaaaccg
    34681 ttttccgtca tcgcgaacac gcccagttcg tttgccgcgc cgaagcggtt tttgatggcg
    34741 cgtatcatgc ggtagttgga atgttggtcg ccctcgaaat acagcacggt atcaaccatg
    34801 tgttccagca cgcgcgggcc ggcaatcgcg ccgtctttgg tcacgtgtcc gaccagtatc
    34861 atggcgatgc ccatctgttt cgccatgcgc gtcagttggg cggcacactc gcgcacctgc
    34921 gacacagaac cgggggcgga agtgatttgg tcggaataca tggtttggat ggaatcgata
    34981 accacgactt cgggctgatg ctgtttcaac gctgcttgaa tcgcttccat gcggatttcg
    35041 gcaagcaggt tcacgccttc ggtgggcagt tccaaacgct gcgcgcgcag ggcgacctgt
    35101 tgggcggatt cttcgccgga aacgtatagc actttacggc tttgcgccat tttggcgatg
    35161 gtttgcagca gcagcgtaga tttgccgatg ccggggtcgc cgccgagcag gatgaccgca
    35221 ccatcgacca aaccgccgcc caatacgcgg tcgagttcgc ccatgccggt cggattgcgc
    35281 ggcacttcgg tggcggtcac ggaggagagg gattggacgg tcgaggtatc cgccgcccaa
    35341 gattggaagc gggcgttttt cggctcgggc gcggccaagc tttcctgaag tgtgttccac
    35401 tcgccgcaat gcgggcattt gccctgccat ttcggggaag tgccgccgca ttcggtgcat
    35461 tggtaaaggg ttttaagcgt ttttgccatc ggttttccct acatctgaaa acaaaaatgc
    35521 cgtctgaaaa tagggacggt tgggattgcg ccaatacggc aacaccgccg ccgtcatgta
    35581 ctatccgtac acggcggata ttgccgcatt gccttatttt taccctaacc ggccatctct
    35641 cggcttcaaa cggcatatcg ggcagtttcc tgccggctta cccgccgtga tactgccgcg
    35701 acagctcgtg tacggtgtcg actaagattt tggcgtgttc ggggtcggcg tgttggttga
    35761 tgccgtgtcc gaggttgaag acatggccgc tgccttgtcc gtagtcggct aggatgcgtg
    35821 cgacctcggt gcggatggat tccggcgtac cgaagagggc gaacgggtcg aagttgcctt
    35881 gcagggcgac ttgcttgccg acgcggcggc gtgcttcgcc tatgttgcac gtccagtcca
    35941 agcccaatgc gtctgcgcca atttctgcca tgctttccag ccacagcccg ccgcctttgg
    36001 caaatacgat aacaggcacg cgtctgcctt cgctttcgcg tttgagtccg gcgacgatct
    36061 ggcggatgta tttgaggctg aattctttaa acgcctcatc gctcaagacg ccgccccaag
    36121 tgtcgaaaat ctgcacagcc tgcgcgcccg cgtcgatttg ggcgttgaga taggcggtaa
    36181 cggcttgagc attggtatcg aggattttgt gcagcaaatc ggggcgcgag tacatcatgg
    36241 ttttgatggt gcggaattct ttgctgctgc caccttcaac catgtagcag gcaagtgtga
    36301 acgggctgcc ggagaagccg ataagcggta cgcggccgtc cagtgcttta cggatggagc
    36361 tgacggcatc aaagacgtat tgcagttttt ccatatcggg gacgtgcaat ttggcaatgt
    36421 cgtcctcgtg ttgcagggcg cgtttgaatt tcgggccttc gccttcggca aaatacagtc
    36481 ccaagcccat tgcgtcaggg acggtcagga tgtcggaaaa caaaatcgcc gcgtccaaat
    36541 cgaaacgttc caaaggttgg atggtaactt cggtcgccaa ttcggtgttt ttgcacaaat
    36601 cgaggaagct gcccgctttc gcgcgtgtgg ctttgtattc gggcagataa cgccccgcct
    36661 gacgcatcat ccaaatcggc gtgtattcga cgggctgttt aagcagggcg cggaggaagg
    36721 tatcgttttt taaaagagtc atacgggttt tctgtcagtc tgtttgtcaa gtgaaatggt
    36781 tttcagacgg catttcaacg atgccgtctg aaggtttcaa caggtttcgg cggaaggtcg
    36841 gttttcctcg gcaacgcttg ccaaaaccaa gttgcgctgc gcctccgcct tctgcggttc
    36901 tccggtttcg tcaaaaacct ttgccaaaac caaacgcgcg gaaatactcg gctttaatgc
    36961 aatgctcgct tcaaggtagc cttttgcctt gccccaaagt ttgcggccgt aggcgagccg
    37021 accgagatac atcagcagaa gcgcgttatc gggctgttct ttcagccaag catcggcaaa
    37081 atcgatggct ttctgctgat cgcgttcgcc caaaaagcgc acgctttcga caaaggcttc
    37141 caaaagctcg gggcggcggt tgtgcggata atgctgtttg acccatttga ccgcatcggc
    37201 atacagtccc aaacgttcgt acttttccgc aaccgatacg ctcaattccc cgtttttgag
    37261 gctgtcggga atccgcttca ggcaggtttt caaagcggcg gcatcggcag catccgccag
    37321 ctggcggcgg tatgcccaat tttgataccg ttccatttcc gatttgccca acgcgcccgc
    37381 cttggaaagt ttttcggttt ttgccagaac ctgcaacgcg tcgcccctgt cgaaagcgta
    37441 acgaagttgc agacgcacga ggcgcgtaag gttggcattc atcttcgccg ccgcatgaag
    37501 attggcttcc gccgcttcgt aatcgcgccg gttcaacgcc gattccgcca acaaaagata
    37561 acgggaaagc tgctgctttt ccggcagttt ggcgatttcc gcaagataac ggtcgcgcag
    37621 ctcgatgttt tccatctgcc cggcggcatg tgcgcccaac atcaatgcca aagtccggtt
    37681 gtctccggcc tctttgttga ccaacacgcg tgaggcttct agttccgcct tttcaaaacg
    37741 cccttcaaaa tacgccaaac ccgccttgtt caaggcaagc gcggccttgc ggcctttacg
    37801 cgccgaaccg aaacgctgca tcttttcggg gatattgaat acgccgataa tgaatttgaa
    37861 caggaaatac cacaccacga cggcaatcag cgaacctaac acaaaggcgt gcaggttgat
    37921 tctgagcatg gtctgtccga gtacgatata cacgtcgccg gtgtaaatgc ccgaagccag
    37981 tgccagtccg acggcggcgg caaacaggac gacaatccag actaccgttt tcatgcgcgt
    38041 tctcctttag cggacggcga acgccctgcc ttttccggta caggctgttt ttttgcaggc
    38101 tgttccggtt tgcgttccga aggcagggac ggtgcttcta tggtcttcac atccgatgcg
    38161 gcagccggtt cggaagctgt gttttcgttt gccggttcgg aagtcgcctg ttccgcttct
    38221 tgattttccg ccgtcgtcat gcgcgtaccg tcgcgatagg cgcggacggc atttaggctg
    38281 tttttcaaac cgtcatccgc cgtcatgcgc acatccaacg ccttcaattc cgccaattcc
    38341 ttcaaccacg actgcgtggc gggggatttg gcatcaaaat actgtctgac ggcggtttcg
    38401 gcattgttca aatcgccctg atagacttcg ctgttgcgct gcattaatgc agtccgcgca
    38461 tccaaaaggc ggagacgcag gttttcacgc acaaaatagg cctgttcggg agaaatcagc
    38521 atggcatcgt tgttttccaa acggcggatt tcgaccagcc ccttcaatgt gccgagggat
    38581 ttttcccata cgttctgcca ccatgaagcg gaaacggctt cgttgcgtgc ctgtacgctc
    38641 ggtttcaata cgccgtccaa aatcagcggc agtccggata cggcgatttc cagcctgtcg
    38701 aggcgcaatg ccgtgccgga aatatcgaca tagggacggt ttttcagttc cgccaagtcg
    38761 ctgctgaccg cctgcttgat cggcagaagc tctgcctgat tgaaacggga caggcggctg
    38821 tcgatatgct ccaatacgcc gactgccgtt tggatattgc cagtcaacac cagctgttgc
    38881 gccgccagat tgagtatggt ctcggtttcg tccaccagcc aatcggcgcg tcctttggtc
    38941 aactcgcgat aggatttttg catttccaag atttgttcgc cgtttgcttt gacgtttccg
    39001 tccaaacggt cgagctctga ttgtatggcg gcttgccggt tgaggttgtc tttgagcagg
    39061 gcggcgtttt ccgactcgcc caaagcggct ttgtcgattt tttggttgaa tgccagctct
    39121 tggtttttca agacattctg tccttggaca aacaaaaaac cacttgtacc caaacccaat
    39181 gccgccaata ccagggcgca gactgccaaa gcgttgctgc cggactgttt gacgataaaa
    39241 ggagcggcag gaatgtgtac ttctgtttcg ttttctttgc gtggggaaga ggtttcagac
    39301 ggcatttctt ttgatgcctg tatctcgcgt acgggttcgg atgatttgtt ttcaggttcg
    39361 cccaccgttt tgctccttat taatttgagg ttccgggaaa gaccatgccg tctgaaacgg
    39421 aaatggaaga atgggaaagc gcggcttcca gcgtagggac ggtttcgacc gaacacacgc
    39481 cttcgcgctt caatgcctcc gcaatgcgcg gatgatgggt aaagtatagc aaggatttga
    39541 agaatcggga aaattgcggc ggaagctgcc cgaacagcaa gcgcaccagc tcggtcgacg
    39601 taatataggc ggcggcaata ttttcggttt ggaaattttg aaagttcaaa ggtttatgcc
    39661 gtctgaaata gacttctgcc atctccgtcc gaaaaccttt ctcctgcaag gcattcatca
    39721 gaaaatcccg cccgccgtgt ccgcgcacaa acaatacgcg tgcaccttcg ggcagactgt
    39781 tccaaaccgg caggcgcaaa accgcctcgc tgtcgtttcc gtcatgaggc gcaatgaccg
    39841 ttctgcccaa atagcgttcc aatgcgcggc ggctgccctg ccctacggca atgtgtatct
    39901 ttatgccgtc tgaaaggtta aggtacggga cggcggtttc aacggcggtc ggactgaccc
    39961 aaaacacggc atccgcacgg gcatattgtt cggacaaaag ttccagtccg gcagcatctg
    40021 cttcgatttc aatcgggctc aacacttccg cctgccatcc ggcacgacgg caggtttcca
    40081 catcgtcctt cgccctgccc gacggtcgga caatcagcat gatgggtttc gctgtttcca
    40141 tcgccttatc cgccccgatt accgggaaaa atcagcatcg ttgaaattcg cctgcgcggt
    40201 ttgcggcgta cagccgaccc gtgcgacttc cttgccccta cgctccacaa cgacaccgct
    40261 gctttccgta tgagtcacgg aatcgaagcc tgtccatatg gtgtacataa attcgccgtt
    40321 ttggaatttc atcgttgccc aacgaccgct gcccatacct tgccacctgt cggaacgccc
    40381 cgacagatca gctttgctgt tgcgtatggc aatttctttt tttgccgcac tgccgaacga
    40441 atattcgtaa agattgcggt tgattttttg aacttctata tatttgttgt tgtccgtttt
    40501 acaggaaaac accgtatccg cccacaccgt ttgggcggca gccgacagaa gcaatacggc
    40561 agaaaggaac atttttttca tcgtatttcc ttaatggttg aaaccccgcc actcggacat
    40621 ccgtccttcg tggcagcagc atcagatttt atttgagagg ggtgtaaccc cttccaaatt
    40681 agggcaacac atagggcaac gctttatgtg tcgtcctgtg tgttgaaaca tcattgcccg
    40741 tatcctgaaa tagaaaagaa aatgcccgtt ttacggtctt ctttccgaca aaatgccgtc
    40801 tgaaacggat ttcagacggc atggtcgaaa attattgcgc ggcaagcggc ttgagcagca
    40861 aggtttcgcc gctttgcaca actttttcaa gcaggtcgat attgggatgc ttgccgggat
    40921 gggcgcgcgc gtcggcaacg tgttcggcaa accatatcaa accctgttct gccgcttctt
    40981 tgtccaattt tccgtcaaaa cgttctgcca aagcgttgta caacttgagc gaaccgagct
    41041 taccctgaac ggcaggaatg tggtgaaccg ttttgccatc tgcatcctga acgtccaaac
    41101 cgcccagatg gtcgattgaa ggaaatgtgg cgagatagtc ttgaaaattc atatcaactc
    41161 cgaaaatcag tcagttagcg cgtgccgaaa atcttgtcgc ccgcatcgcc caagccgggg
    41221 atgatgtagc cgttctcgtt caagtggctg tcgagcgcgg cggtgtaaat cgtaacgtcg
    41281 ggatgcgcgt cgttgaccgc cttcacaccc tcgggcgcgg caaccagcac cagtgccttg
    41341 atgtttttgc agcccttggc tttcaaaagg tcgatggtgg caaccatcga accgcccgtc
    41401 gccagcatcg ggtcgataat cagggcagga cgttcgtcca tgctgtccac gaatttctcg
    41461 aagtaggaaa cgggtttcag cgtttcctcg tcgcgctgca gtccgactac gctgattttg
    41521 gcagtcggaa tcaggtcgag tacgccgtca agcataccca aaccggcacg caggatggga
    41581 acgacggtca atgttttgcc cttgatgcgg tcgccttcaa tctgaccgca ccatccgtcg
    41641 ataaggtatt tttcgatttc aaaatcacga cttgcttcgt acgccatcag gcgcgccagc
    41701 tctgtggtaa gcgttcggaa tttgtaggtg ctgcaatctg cctccctcat cagggttaat
    41761 ttgtggcgga cgagcggatg gttgataacg ttaacgttca tcgcggtgtt ccagtgtgat
    41821 tttgagacgc gccattatac ttttttttga tttgccggaa aagaaaatgc cgtctgaaac
    41881 acgttcagac ggcattgccg aatccatcag gctttcagca gctcttgcag ctcgcctgcc
    41941 tcatacattt ccatcaggat gtccgaaccg ccgacaaact cgccgttcac ataaagttgg
    42001 gggatggtcg gccagtcgct gtattcttta ataccttggc gtacttcggg attttccaat
    42061 acgttgacgg taacgtaatc ggtgcagcct gccgcgttca ggatttgcac ggcgcgggaa
    42121 gagaaaccgc attgcggaaa ctgcttcgta cctttcataa acaatacgac gcggtgtgtc
    42181 gttactactt ctttaatttg gtcgtggatg gaagccatcg cttattcctt ttgataaagt
    42241 tgacaaaatt tgtcaggtag gacgcattat acgcaaaagc ggaaacttcc cacaatattt
    42301 gccgtatatc gcgcagtatc aatgttgtga acggaaatat tcccactcct cgacaatcct
    42361 gctgtccggc aaatggcaca gggcatatcc gccgccgctt tcgtcttttt ttacttcccg
    42421 tctgccgcct ttggcaatgc agaatttgga agcggaattt gccatgcctg tccgaaacgt
    42481 gttggcaggc agccggcagc agcgcggaca tgcatacgga tgaattgcct tcatggtttt
    42541 ccttatcgtc ggtacagggt cagacgggcc gcatatcggg tactttttta aacagccggt
    42601 aaaagttttc cgtcgtatat gccgcaacct gttccaatgt ttggttccgc aatttggcga
    42661 tatgttcggc ggtatggcgc acaaaagccg gttcgttctg cctgccgcgt ttgggaacgg
    42721 gggcgaggaa tggcgcatcg gtttccacca aaatgcggtc gtccggaacg tattttgccg
    42781 cctcctgaac caagggggcg tttttaaagg taacgattcc cgagaaagaa atgtaaagcc
    42841 ccaaatccat tgctgcacgg gcaaaaccga tgtcttcgga aaaacagtgg ataacgcccg
    42901 aattaacccg gcattctttc aggatagaca aggtgtccgc cgccgcatca cgcgtatgga
    42961 cgataacggg cagtccggtt tgattggctg cttcgatgtg gtctgcaaag cgtttgtgct
    43021 gccaggacaa atcgcctttg caccagtaat aatccaagcc cgtctcgccg atgccgacca
    43081 ctttcggatg ggcggctgca gcaaccattt ccgcaataga aaattcttcg gcttccttgc
    43141 tgtcgggatg tacgcctatt gtgcagtaaa tatgttcata aacttcggcg atagcggata
    43201 cttcggcaaa actttccctg ctgacgctga tggcgagcgc ctgccccacg ccgtttgctt
    43261 ccatgttgga caaaacttcg ggcaggcgtt ctttcaaacc ttcaaaattg aggtggcagt
    43321 gcgaatcgat gatatgcatg gcgttacatg gtaaacgtag gtctgctgcc gccgattgtg
    43381 ttgcccagtt cgacttcgat ctggtctttg actttcaggc agttttcgtg ttttgtgaat
    43441 gccagcccca cccctttggg tttggaggaa gtacgcgcag gattgatcca ggcgactttg
    43501 gtcggcagga acagtttggg gaagttgagg atttctacgg caagcagaat atcgtccccg
    43561 atggaaaata cgtcgttggt ctgcacaaac agaccgccgt gttccaaaaa cggcatatag
    43621 gagctgtaca gcagattcat gtctttcagc tgcaacgaca tcatttttgc cggaatattt
    43681 tgtccgtctg acataattca cccgttctct ttcttcaatt ccaaataatt gatgagcaga
    43741 tgctcgatct gcattttgac atttaaagta tgaaacccgt aaggggcaag ctgtttgagc
    43801 atatcctccg ccgcaaatac attgcgcggg cggaaaccgg atgccgtctg aagcagcctg
    43861 tcttcataag cgggataata gacgggtttc atgtgttgca ggcacaatcc caaatcgacc
    43921 agccatttct gcatccaccc gacaaatacg tcgagcggaa gtttctcctt atcgaaaagc
    43981 gcggcgtaat ccaaaatctt caacaacctt ggttctgcca aaatatccaa cagtttaatc
    44041 cgcaacgcac ggacaccgtc cgcctcatca aacagcggcg cacccgaatg gaacgccaaa
    44101 aattcttccg gctccgccac acccctgtcg cgcagatatg ccaatgcttc cccatgcgaa
    44161 ggagcgggca aaaccatctt ccggcagcga cttttaatgg tcggtaaaac cttgtccgcc
    44221 gcgtggctga ccagcaaaaa gaccacttgt ggcggcggtt cttccaacac tttcaacaaa
    44281 ctgttggcgg cttggacatt catactttcc gcaggatgaa tcagaatcac gcgcaaaccg
    44341 ccccgtaccg aagtcaggta cacattatcg atgatttccc tgacggcatc gattttgatc
    44401 tgcaacagtt tgcgtccgtt ttcgggttcg tccgacaagg gggtgatttc gtaaaaatcg
    44461 ggatggcttc cctgtccaaa cagatggcag gacatacatt cgccacaggg tttgcagccc
    44521 ggtgcagggg tttcgcacaa cagtgccttc gccgcaaagc gggcaaatgt agttttcccc
    44581 gtatcttttt tgccggcaaa cagccatgca ttgggacgac gctcccaatg ttccgcaatc
    44641 tgccgccatt gctcattatg ccacggataa atcatttcaa accatccgtc cggaaatcca
    44701 taccgccatc agagcagttc caaatcgggg ctggaacttt gcgcgcggcg gctgcgcaac
    44761 tgtaccgcca aacgcaaatc gtgtgcggaa tcggcatttt tcaatgcttc ttgcagggaa
    44821 atatcgcctt tttcatacaa ttggtaaagg tgttgatcga aggtctgcat acccagggta
    44881 gtggattttt tcatcacttc tttgatttca tggatgttgc cgttgtgaat caactccgaa
    44941 atcaggggcg aattgagcag cacctcgact gccgccaccc tgcccttgcc gccgtctcgc
    45001 ggaacgaggc gttgcgaaat aaacgcctga aggttgagcg acaaatccgt cagcaattgt
    45061 tcgcgccgct cctcggggaa aaagttgatg atgcggtcga gtgcctgatt ggtgctgttg
    45121 gcgtgcagcg tcgccataca caaatgcccc gtttcggcaa aggcaatggc gtagtccatc
    45181 gtttcgcggt cgcggatttc gccgataagg atgacatccg gcgcctgacg cagcgtgttt
    45241 ttcaacgccg ccatccagtt ttccgtatcc acgccgacct cgcgctgggt gatgatgcag
    45301 tttttgtgtt cgtggacaaa ctcgatcggg tcttcgatgg tgatgatatg tccgaacgaa
    45361 ttttcattgc ggtaatcgat aagcgaggca agcgaagtcg atttgcccga gccggtgccg
    45421 ccgacaaaaa taaccagccc gcgttttttc agcgcgacat ccttcaagac cggcggcagg
    45481 ttcaggcttt caaacttggg aatcttgctg gtaatcgcac ggaataccaa cgccgtcgcg
    45541 ccgcgctgta tcatcgcatt gacgcggaag cggctggtgt ccggcaggct gatggcgaag
    45601 ttgcactcgt tggtcgatga aaattcttcc gcctgcttcg cactcataat cgaaaaggcg
    45661 atttccatac atttttccgc cgtcagcggt tcgtccgtga tgcgggtgat tttgccgtcc
    45721 agcttcattg cgggcgggaa atgggtcgtc acaaacaggt cggaaccttt gtttttgttc
    45781 atatggcgca gccatgcgaa cagttcttcc tttgcggtca tattttcatc ggtaaacatc
    45841 ctcgtcccct aatcttcaaa caatctgtac cttcccattc taccaaaaac ccgccgtgcc
    45901 gtctgaaacc gtttcagacg gcacggacaa accacctcca ctcaatcctg ccgtgttagc
    45961 gtgtataatc aggcattcta tccgaaattc acaacaggtc agcaatatgt ctttgaaaac
    46021 agtagccgtt atcggcgcaa tggaacaaga aatcgagctt ttgcgcgaga tgatggaaaa
    46081 tgtcaaagcc gtctctttcg gcaagtttgc cgcctatgaa ggcgaattag cgggaaaacg
    46141 catggtgctt gcattgagcg gcatcggcaa ggtcaacgcg gcggttgcaa cggcttggct
    46201 tatccatcaa ttcgcaccgg actgcgttat caacaccggc agcgcgggcg gcttgggcaa
    46261 gggtttgaaa gtcggcgatg tcgtggtcgg cacagaaatc gcgcaccacg atgtcgatgt
    46321 aaccgcattc ggctatgttt ggggacaagt gccgcaactg cccgccgtat ttgtttcaga
    46381 cggcctcttg gtcggcaaag caaaacaggc ggcggaagtg tttgaaggcg cggcggtaga
    46441 acaaggcctg attgtcagcg gcgaccgctt cgtccacagc agcgaaggcg tggcggaaat
    46501 ccgcaagcac ttccccaaag tcaaagcagt ggaaatggaa gcggcggcga ttgcccaaac
    46561 ctgtcatcag ttggaaacgc ctttcgtcat catccgcgcg gtttccgatt cggcggacga
    46621 aaaggcagac atcagctttg acgaattttt gaaaacggcg gcggcaagtt ctgcaaaaat
    46681 ggtggcagaa atcgtcaaat ctttataaaa cctttatcaa atcatgccaa aacagcggtt
    46741 ttccgttaga atatcgggct atttccacgt tgcacccgat attcggacgc aacgccgttt
    46801 gttcagacgg catttcccaa acccactgtc cgacattcaa aacaactcta atgaaaaata
    46861 tccgaaattt ctccatcatt gcccacatcg accacggcaa atcgacgctt gccgaccgct
    46921 tcatccaata ttgcggcggt ttggatttgc gcgaaatgag tacgcaggta ctcgattcca
    46981 tggacatcga aaaagagcgc ggcattacca tcaaagcgca aaccgccgcg ctcaactata
    47041 aagcgcgcga cgggcaggtg tatcagctta atttgattga cacgccggga cacgtcgact
    47101 tctcttacga agtttcccgt tcgctgtccg cctgcgaagg cgcgcttttg gtcgttgacg
    47161 cgtcgcaggg cgtggaagcg caaaccgtgg cgaactgtta caccgcgatt gatttgggcg
    47221 tggaggttgt gcctgttttg aacaaaatcg acctgcccgc cgccgacccc gaacgcgtgg
    47281 agcaggaaat tgaagacatc atcggcatcg atgcggtcgg cgcggtgcag tgttccgcca
    47341 aaagcggcat cggcgtggaa gacgttttgg aagaaatcgt tgccaaaatt cctgcgccga
    47401 ccggcgatga aaacgcgccg ctgcaagccg tgattgtcga ttcgtggttt gacaactacg
    47461 tcggcgtggt catgctgatt cgagtgaaaa acggcaccat caaactgaaa gacaaagtgc
    47521 gctttatgag caccaaggcg gaaacgcagg tcgagcagct gggcgtattc acaccaaaat
    47581 cagttcaaaa acaagaactc aaagccggcg aagtgggctt tttgattacc ggcgtaaaag
    47641 aattgggtca ggcgaaagtt ggcgatacgg ttacactggt tgccaaccct gccactgagc
    47701 cgctgcccgg cttccaagaa gtacaaagcc aggtattcgc cggactttat cccgtggaaa
    47761 gccacgacta cgaagccttg cgcgacgctt tggaaaaatt gcagcttaac gacgcttcgt
    47821 tgaaattcga gcctgaagtt tcccaggcat tgggcttcgg cttccgttgc ggcttcttgg
    47881 gtctgctgca cttggaaatc gtgcaggaac gtttggaacg cgagttcgac atggatttga
    47941 ttaccaccgc gccgacggtg gtttatgaag tcgtgttgaa aaacggtgag aaaatcgaag
    48001 tcgaaaaccc atccaaactg cccgacatcg gcagcatcga aaccattctc gagccgatta
    48061 ttaccgcgac tatcctcgtg cctcaggaat atgtcggcaa cgtcatgact ttgtgtaacc
    48121 aaaagcgcgg cgttcaggtc aatatgcagt acatgggccg ccaagtgatg ctgacttacg
    48181 atttgcccat gaacgaagtc gtcatggact tctttgacaa actcaaatcc acttcgcgcg
    48241 gttatgcttc gttggactac catttcaaag agttccaacc gtctgatttg attaagctgg
    48301 atattatggt caacggcgaa aaagtcgatg cattaagcct gattgtgcac cgtcaaagcg
    48361 cggttcaccg aggccgcgag ctggcatcaa aaatgcgcga gctgattccg cgccaaatgt
    48421 tcgacatcgc cgtccaagcc gccatcggca gccagattat cgcccgcgaa aacgtcaaag
    48481 ccctgcgtaa aaacgttttg gcgaaatgtt acggcggcga tattacgcgt aagaaaaaac
    48541 tgcttgaaaa acaaaaggca ggtaaacgcc gtatgaaaca agtgggcaat gtggaaattc
    48601 cgcaaagcgc gttcttggcg attttgcagg tgagcgacaa ataactctgg cacacagggc
    48661 ggcgcgtcgg gaacacccct caaaccgccc tgatttcagg ggcacgcgcc cgcaaacaaa
    48721 ttttgcaatt tgccgcctta aaacggttgc acggacaggc gggtttttaa gcattaagga
    48781 acaacaatga acacaatgct aatgtcgggc gcggctgccg cgctgcttgc cggcatcatc
    48841 ctttatttca aaagcgacaa aaagcggcag gaaaacggtg aatggagttc cggtctggaa
    48901 tacgcctata tcctgacggc ggtcggcgtg tttgccgctt tgtccctgtt tatgagcttt
    48961 accgccgttt tcctgatttt cgttgtattg tgcggtacgg cttggggggt atacaaatac
    49021 cgcctgaaga ctcatcccga aatctcggaa agcagccact tcggcgatta tttcggcagt
    49081 ttcttcccta ccgttttggt attgttcctc atccggtcgt ttattgccga accgttccaa
    49141 atcccgtcca gctcgatgcg cccgggcctg attaagggcg atttcatttt ggtcggcaaa
    49201 ttttcctacg gcctgcgcgt acccgtttta aacaatatat ttattcctac aggcaaaatc
    49261 gaacggggcg atgtcgttgt ttttaattat cctctgcagc cggagatgac ctacatcaag
    49321 cgtattgtcg gcattccggg cgatgtggtc gaatatcggg ataagatttt gacggtaaat
    49381 ggcaaaccca cttccgatat tcctaacggc acataccgtt atcccgacga taccgaccct
    49441 tccgaaatcc acaacacgga tatgttccgc agcggtttgg acggcaaatc cttcaatatt
    49501 ctgaaaaaag aaggacagcc ggccgtttcc ctgcccgtat tgggcaaata tacctccgat
    49561 attatgtctg aaaacggata ttccatagag caaagcggtt tggaacactg ccaatatgcc
    49621 gacgacggca gcggtttcgt gtgcaaagtt cccgaaggac gctatttcgc tatgggcgac
    49681 aaccgcgaca acagtgccga ttcgcgctac tggggatttg tggatgacaa gctggttgtc
    49741 ggcaaggcaa tgttcatttt gatgaacttc ggcgatttcg gcagggccgg tacggcaatc
    49801 cgttaggcca ggaagccaag aatgccgtct gaaaatagtt tcagacggca tttgctattc
    49861 ctcacttttg caggcggatc taacgttgtc ggattttcct ac
//
LOCUS       DAXHNP010000002        33895 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.002, whole genome shotgun sequence.
ACCESSION   DAXHNP010000002 DAXHNP010000000
VERSION     DAXHNP010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 33895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33895
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.002"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..1183)
                     /locus_tag="ACFM5C_000055"
                     /pseudo
     CDS             complement(1..1183)
                     /locus_tag="ACFM5C_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678130.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
     gene            1329..2033
                     /locus_tag="ACFM5C_000056"
     CDS             1329..2033
                     /locus_tag="ACFM5C_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248833.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFC6067849.1"
                     /translation="MLRSILAASLLAVSFPAAAEALNYNIVEFSESAGVEVAQDTMSA
                     RFQVAAEGRDKNAVNAEFVKKFNSFNRKLKNGSFKTELVSRSAMPRYQYTNGRRIQTG
                     WEERAEFKVEGRDFDALNRFIADVQTDASLEYTDFSVSRERRNEVIDQVSKDAILRFK
                     TRAEKLAGILGASGYKIVKLNLGHIGSHIAGGGAAQAKMLRAMPMAASVNMEGADSAA
                     QGVEEISISVNGTVQF"
     gene            complement(2097..2663)
                     /gene="dcd"
                     /locus_tag="ACFM5C_000057"
     CDS             complement(2097..2663)
                     /gene="dcd"
                     /locus_tag="ACFM5C_000057"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFC6067850.1"
                     /translation="MSIKSDKWIRRMSEEFGMIDPFEPNQIKEADGKRIISYGTSSYG
                     YDIRCANEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFF
                     ESDEICKTSYKDRNGKYMGQTGVTLPKA"
     gene            complement(2729..3145)
                     /locus_tag="ACFM5C_000058"
     CDS             complement(2729..3145)
                     /locus_tag="ACFM5C_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MORN repeat-containing protein"
                     /protein_id="HFC6067851.1"
                     /translation="MLKHLAFLLPAMMFALPTSAAVLTSYQEPGCTYDGGVGKDGLPS
                     GKGIWRCRDGRGYTGSFKNGKFDGQGVYTVSANREIFIEPFNSDSTKFRNMVLSGTFK
                     KGLAHGRFTVSQNGETLFIMKCENGMIQEVKLPKNK"
     gene            complement(3207..4106)
                     /locus_tag="ACFM5C_000059"
     CDS             complement(3207..4106)
                     /locus_tag="ACFM5C_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HFC6067852.1"
                     /translation="MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGF
                     AAPVSFSPELVFPADFTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEK
                     QELKEQITDDLLPRAFTRSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLE
                     ASLPNTKQSPSSLMTGWLLQGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVV
                     QHVKNGKTVTQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAAGLAFASQ
                     ILMAESVSTMLEELVSYLGGWQD"
     gene            complement(4137..5594)
                     /gene="der"
                     /locus_tag="ACFM5C_000060"
     CDS             complement(4137..5594)
                     /gene="der"
                     /locus_tag="ACFM5C_000060"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFC6067853.1"
                     /translation="MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGH
                     GKVGSKPYLVIDTGGFEPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKI
                     IADRLRQSPRPVYLAVNKGEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEIL
                     ENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDF
                     EREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDA
                     TIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI
                     DGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNPPV
                     IVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPYENAEDKPKKKPLR
                     RVSLSNRIEKREDRKEEKNRFKKKTKVSVKKQFSK"
     gene            complement(5744..6373)
                     /locus_tag="ACFM5C_000061"
     CDS             complement(5744..6373)
                     /locus_tag="ACFM5C_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HFC6067854.1"
                     /translation="MAAHLEEQQELDNFKYFWKTTGKWLFAVLILAALGYLGYTVYQN
                     RAASQNQEAAAVLANIVEKAQNKAPQSEINAELTKLQQSYPHSISAAQATLMAAATEF
                     DAQRYDVAKGHLKWVLSNQKDSLIQALAAQRLGVVLLQQKKYDAALAALDTPVEADFS
                     PLLMETKGDVYAAQGKSQEALKNYGQALEKMPQDSVGRELVQMKLDSLK"
     gene            complement(6374..7669)
                     /gene="hisS"
                     /locus_tag="ACFM5C_000062"
     CDS             complement(6374..7669)
                     /gene="hisS"
                     /locus_tag="ACFM5C_000062"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFC6067855.1"
                     /translation="MAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTCAYG
                     YRQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVE
                     HNLLYNSPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLW
                     EKLGIREYLTLEINSLGNREERAAHRAALVEYLTRYEDKLDEDSKRRLKTNPLRVLDT
                     KNPDLQEICNAAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTV
                     FEWTTDKLGAQATVCGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVGEYGSLEVNA
                     APDVYAMHQGERADLQVMKYAQALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIV
                     AQDELANGTVTLKDMNGAHGQQTVAAEDLTHTLQQWKNA"
     gene            complement(7796..8452)
                     /locus_tag="ACFM5C_000063"
     CDS             complement(7796..8452)
                     /locus_tag="ACFM5C_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6067856.1"
                     /translation="MEQKRRFAASLLLAAALPLCAHSFPFAEENPIAYGKVKIQSWKA
                     RRDFNIVKQDLDFSCGAASVATLLNNFYGQTLTEEEVLKKLDKEQMRASFEDMRRIMP
                     DLGFEAKGYALSFEQLAQLKIPVIVYLKYRKDDHFSVLRSIDGNTVLLADPSLGHVSM
                     SRAQFLDAWQTREGNLAGKILAVVPKKAETISNKLFFTHHPKRQTEFAVEQIRQARAE
                     "
     gene            complement(8613..8900)
                     /locus_tag="ACFM5C_000064"
     CDS             complement(8613..8900)
                     /locus_tag="ACFM5C_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067857.1"
                     /translation="MDDLIVAFLGYLSGKYSEGKISRLEISLTAGSIFFVVFFIHELI
                     IFIVDGNKENLWNFITEMMKDLFLFSCSVCLLFYFLLFIAETIGKTINKIK"
     gene            complement(9104..9319)
                     /locus_tag="ACFM5C_000065"
     CDS             complement(9104..9319)
                     /locus_tag="ACFM5C_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067858.1"
                     /translation="MVNKYIKTAISITAISIFYLLTQESSGKTEEPSYFLMFMFLNSL
                     WFEENKTVMAAVTAMIAAHLIFVTLSD"
     gene            complement(9309..9704)
                     /locus_tag="ACFM5C_000066"
     CDS             complement(9309..9704)
                     /locus_tag="ACFM5C_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067859.1"
                     /translation="MKKQITAAVMMLSMIAPAMANGLDNQTFENQVFHTQADAPMQLA
                     ELSQKEMKETEGAWGPVGAFIGGVGGGIGYMMNQQLSGSRFSPTAFTLAVGAGAFGGA
                     TAGPAGVVWGFNRSLATGMVTGVAQRYGK"
     gene            complement(9747..10616)
                     /locus_tag="ACFM5C_000067"
     CDS             complement(9747..10616)
                     /locus_tag="ACFM5C_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="meta-pathway of phenol degradation family
                     protein"
                     /protein_id="HFC6067860.1"
                     /translation="MKRIFLPALPAILPLSTYADLPLTIEDIITDKGKWKLETSLTYL
                     NSENSRAALAAPVYIQTGATSFIPIPTEIQENGSNTDMLAGTLGLRYGLTGNTDIYGS
                     GSYLWHEERKLDGNGKTRNKRMSDISAGISHTFLKDDKNPALIGFLEGILYEKSRGKA
                     SSGKSWLIGATTYKAIDPVVLSLTAAYRINGSKILSDSIRYKSGNYLLLNPNISFAAN
                     DRISLTGGIQWLGRQPDRIDGKKESARNTSTYAHFGAGFGFTKTTALNASARFNVSGQ
                     SSSELKFGVQHTF"
     gene            10780..11703
                     /locus_tag="ACFM5C_000068"
     CDS             10780..11703
                     /locus_tag="ACFM5C_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6067861.1"
                     /translation="MKKRNNPLPLLNGVKPSYLVLPHEKQFYGLPLLHFLCIRFPFVG
                     ADDWRRRLNSGFVVGSDGAALDEHSLFEPGKVMFYYRETSRESEPRIPFEEKILHIDE
                     HLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAGVMLL
                     SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEAEGE
                     PNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSED
                     YRKPLKLLAKKIAFADPLSGRERVFCSGFCL"
     gene            complement(11781..12422)
                     /locus_tag="ACFM5C_000069"
     CDS             complement(11781..12422)
                     /locus_tag="ACFM5C_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6067862.1"
                     /translation="MQKPETIHIPGPAGILETIHIPSEQVPARGVAVINHPNPLQGGT
                     NTNKVIQTAAKALSKLGFHCYLPNLRGVGGSEGTHDYGRGETQDCLAVIDYARAQHPE
                     APEFALSGFSFGGYVATFAAQARIPDLLLLIGAAVCHYTGRPEPSAVPNVAKTLMIHG
                     AEDEVVEIGKALKWAEPQDLPVITIAGSTHFFHGKLIVLRDTILRFAPVCLNG"
     gene            complement(12477..13268)
                     /locus_tag="ACFM5C_000070"
     CDS             complement(12477..13268)
                     /locus_tag="ACFM5C_000070"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HFC6067863.1"
                     /translation="MARHPYRRLRPAKSSFPEVGISEEGNIRSLHLGSDTIQSSMNLD
                     HPSELVLSYSRAMMGWLLFTDALPQHITQIGLGGGSFARWIDTYLPDTRQTAVDINPQ
                     VIAIARSLFELPFEGEKFEIIEADGAEYIKVFRHNTDVILVDGFDGEQIIDALVEEPF
                     FRDCRNALSSDGIFVTNWWSGDKRYQRFIERLLSVFEGRVLELPAESHGNVAVMAFQS
                     SPKEQNIDKLKKRADKLSNAYGLDFHRMLADLKASNPNNGKHFHL"
     gene            13434..13509
                     /locus_tag="ACFM5C_000071"
     tRNA            13434..13509
                     /locus_tag="ACFM5C_000071"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13467..13469,aa:Thr,seq:tgt)
     gene            13544..13619
                     /locus_tag="ACFM5C_000072"
     tRNA            13544..13619
                     /locus_tag="ACFM5C_000072"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13577..13579,aa:Thr,seq:tgt)
     gene            13761..14552
                     /gene="panB"
                     /locus_tag="ACFM5C_000073"
     CDS             13761..14552
                     /gene="panB"
                     /locus_tag="ACFM5C_000073"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFC6067864.1"
                     /translation="MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDS
                     LGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL
                     MAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA
                     LLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGVDCDGQVLVMHDMLG
                     IFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPAAEHIFAD"
     gene            14675..15511
                     /gene="panC"
                     /locus_tag="ACFM5C_000074"
     CDS             14675..15511
                     /gene="panC"
                     /locus_tag="ACFM5C_000074"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFC6067865.1"
                     /translation="MQIIHTIRELRAWRKNAGKVAFVPTMGNLHEGHLALVREAKKRA
                     DSVVVSIFVNRLQFGQGEDFDKYPRTLQQDADKLEAEGVAVVFAPDEKELYPNVEQRY
                     NVEPPNLQNELCGKFRPGHFRGVATVVSKLFNIVAPDVACFGKKDYQQLAVIKGLTED
                     LNFDVEIVPVDTGRAEDGLALSSRNQYLSAAERDEAPRLYCELKAVAESLAQGSLDYA
                     GLERQAADHLTAAGWVVDYVEIRRADTLEVARAGDKKLVVLAAARLGTTRLIDNLEIK
                     LP"
     gene            15676..17520
                     /locus_tag="ACFM5C_000075"
     CDS             15676..17520
                     /locus_tag="ACFM5C_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6067866.1"
                     /translation="MLPNRFKMLTVLTAALIAGQVSAAGSGAGDMKQPKEVGKVLRKH
                     QRYSEEEIKNERARLAAVGERVNQIFTLLGGETALQKGQAGTALATYMLMLERTKSPE
                     VAERALEMAVSLNAFEQAEMIYQKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLE
                     EVLAQADEGQNRRVFLLLAQAAVQQDGLAQKASKAVRRAALKYEHLPEAAVADVVFSV
                     QGREKEKAIGALQRLAKLDTEILPPTLMTLRLTARKYPEILDGFFEQTDTQNLSAVWQ
                     EMEIMNLVSLHRLDDAYARLNVLLERNPNADLYIQAAILAANRKEGASVIDGYAEKAY
                     GRGTEEQRSRAALTAAMIYADRRDYAKVRQWLKKVSAPEYLFDKGVLAAAAAVELDGG
                     RAALRQIGRVRKLPEQQGRYFTADNLSKIQMLALSKLPDKREALRGLDKIIEKPPAGS
                     NTELQAEALVQRSVVYDRLGKRKKMISDLERAFRFAPDNAQIMNNLGYSLLSDSKRLD
                     EGFALLQTAYQINPDDTAVNDSIGWAYYLKGDAESALPYLRYSFENDPEPEVAAHLGE
                     VLWALGERDQAVDVWTQAAHLTGDKKIWRETLKRHGIALPQPSRKPRK"
     gene            17661..18242
                     /locus_tag="ACFM5C_000076"
     CDS             17661..18242
                     /locus_tag="ACFM5C_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HFC6067867.1"
                     /translation="MKHTVSASVILLLTACAQLPQNNENLWQPSEHTRSFTAEGRLAV
                     KAEGKGSYANFDWTYQPPVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAE
                     ELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTL
                     QLNNGNLNIRLVFTEIGMPSETETLERCAARTR"
     gene            18252..19097
                     /gene="ispE"
                     /locus_tag="ACFM5C_000077"
     CDS             18252..19097
                     /gene="ispE"
                     /locus_tag="ACFM5C_000077"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFC6067868.1"
                     /translation="MNIADGRQAFPAPAKLNLDLRITGKREDGYHNIESIFCLIDLQD
                     TVYLKLRDDGKIILHNPVDGMPQEVDLSYRAASLLQKYARNPAGVEIWLDKKIPTGAG
                     LGGGSSDAATVLLVLNRWWQCSRTTQQLIDLGATLGADVPFFIFGKNAFASGIGEKLI
                     GMDIPKQWYVIVKPPVHVSTAKIFTHEGLTRNSASSIMPTFQNLQPFRNDMQAVVFKE
                     YPEVWKAYSELSRYGFALMTGSGACVFTACQDRDSAYNIYRQVSDLYEAYLAEGLSKH
                     PWLSV"
     gene            19105..19180
                     /locus_tag="ACFM5C_000078"
     tRNA            19105..19180
                     /locus_tag="ACFM5C_000078"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19138..19140,aa:Gln,seq:ttg)
     gene            19193..19268
                     /locus_tag="ACFM5C_000079"
     tRNA            19193..19268
                     /locus_tag="ACFM5C_000079"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19226..19228,aa:Gln,seq:ttg)
     gene            19277..19352
                     /locus_tag="ACFM5C_000080"
     tRNA            19277..19352
                     /locus_tag="ACFM5C_000080"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19310..19312,aa:Gln,seq:ttg)
     gene            19519..20502
                     /locus_tag="ACFM5C_000081"
     CDS             19519..20502
                     /locus_tag="ACFM5C_000081"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFC6067869.1"
                     /translation="MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVA
                     VELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDR
                     RPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIK
                     QQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTC
                     LIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT
                     IPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP"
     gene            20569..21141
                     /locus_tag="ACFM5C_000082"
     CDS             20569..21141
                     /locus_tag="ACFM5C_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFC6067870.1"
                     /translation="MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVD
                     HKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQLVR
                     IRVPLHIVNAENSQAVKLQGGRVSLLNTSVEVVALPANIPAFLDLDCAEVVAGDILHL
                     SDIKLPEGVESVSLKRNENLAVATVTGKKR"
     gene            complement(21568..21786)
                     /locus_tag="ACFM5C_000083"
     CDS             complement(21568..21786)
                     /locus_tag="ACFM5C_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067871.1"
                     /translation="MRAVEICGFFFAGDEGAGSGALQVEIGGGFARPIELITFARTGK
                     VFCAEDEFELFKVNLVFTKDFGKELFEF"
     gene            21790..23418
                     /locus_tag="ACFM5C_000084"
     CDS             21790..23418
                     /locus_tag="ACFM5C_000084"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006306 - obsolete DNA methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6067872.1"
                     /translation="MFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKF
                     SESREEYARRVGDTDDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTL
                     LREDGVIFISIDDNEQAQLKLLCDEVFGAENFVGQFPWRKRTAKSDVPFGVSADYEYL
                     LAYARSNAFIASIDAEERRYFETDDFPNRPWRTHDLTTQRNASERPNSFFTMVNPKTG
                     KEYPANPNATWRVTKDTFQEYYNAGKIVFPDDYDFLKIKNPVMRYFKDDDMKKDGERF
                     GRKAVSTRLPENVGMSLNGTKEITELFKSKLFDFPKPSSLIKYLLQILHVSDGLILDF
                     FSGSGTTAHAVMQLNAEDGGNRRFICVQLPEETDEKSEARKAGFDTIAEIAKERIRRA
                     GRQISDGLQDGSETDTGFKVFKLAESGFKQWRQPEQSDTEALQRELSLNIDSVLSETS
                     SENLLYELMLRMGLKLTCKVSFLDDVYFVEDEDTGGLYAFLLKRVDQGLIDAVLAKHP
                     AKVAALDRLFEGDDALKSNTVLQMKDAGVMFECV"
     gene            23653..26304
                     /locus_tag="ACFM5C_000085"
     CDS             23653..26304
                     /locus_tag="ACFM5C_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HFC6067873.1"
                     /translation="MELKFEELPYQLDAVNAVANLFAGQPNHARTFDLTSQGTGRFVG
                     NGLDLDWETLGLNLNTVQKQNGQPETEIGAHGLNFSLEMETGTGKTYVYLRTIYELNR
                     SYGWKKFVIVVPSVPIREGVLKSLEITKAHFDGVFGRPVMRYAEYSSSRLSDLRTFAV
                     NDHIEILVINIQSFEKDGNVINKVNESGETPIKFIQETCPIVIIDEPQNMETEGRLNA
                     LESLNPLFTLRYSATHKQPYHKVYSLNPVQAYNLKLVKQIEVLPVLAENDVNGAFVEL
                     LEVKQAAKGRPKADLNIHYQDKKETKKKKVSVKWEDDLFEKSGGNEAYRHGFIIDGMD
                     FDKQELAFSSGKTITRGGDGDAVRDEIMKNQIRETVREHLAKEKRLNPLGIKVLSLFF
                     IDRVENYRTEDGTAGKFALWFEEIYRELAGNTDTAGVHDGYFSQDRKGRLKNTDGTTQ
                     ADNDTYRLIMRDKETLLSFDSPLRFIFSHSALKEGWDNPNVFQICTLNETRSPLKKRQ
                     EIGRGLRIAVNQEGRRVRDENVNILTVVPNESYELFAANLQKEYEDECGIKFAAENIK
                     NGNKKKKQLFRKDFPLDPEFQAIWDKLKYKTRYRVRFDTEELIKQASEAVANLPEIQK
                     PKIRIRKAQLKQSQTYGIETVEIAGRSREMDVQWEIPDILGEIQRKTGLTRRTVYEII
                     IQSGRLKDVAGNPQRFIDLTAEAVNRSLHALMAAGIEYERTGEVYDQKLLEDMAREGI
                     EFYENGFTFTVSNPQKTICENYIPLDSGTEKAFAQNCEDYDAKNEGGVAFYFKLPGWF
                     KIPTPLGNYNPDWAVVKQVRDKVYFVAETKNTGKGIQTGVDMDKLRQNERLKIKCGKR
                     HFEALGGLAYRVVEKVGDLKSEKEEQA"
     gene            complement(26466..27635)
                     /locus_tag="ACFM5C_000086"
     CDS             complement(26466..27635)
                     /locus_tag="ACFM5C_000086"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HFC6067874.1"
                     /translation="MTAHKILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETL
                     TAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPES
                     AWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLVGRLGNGSIENFVQQMNKEA
                     RRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQ
                     NNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSK
                     LLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKTTEQIL
                     ETIQPIPAPVKKGQILGKIKIRQNGYTLAEKEIVALENVEKRSRWQRLWTRLTGQ"
     gene            27783..29309
                     /gene="ilvA"
                     /locus_tag="ACFM5C_000087"
     CDS             27783..29309
                     /gene="ilvA"
                     /locus_tag="ACFM5C_000087"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HFC6067875.1"
                     /translation="MNTPLPYSNYLIRILTASVYDVAVETPLEPARSLSVRLKNNILL
                     KREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIV
                     MPETTPKIKVDAVKSRGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQ
                     GTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQS
                     VEAGEIVHLKDVGLFSDGTAVKVVGNETFRLCKELLDEIITVDTDAVCGAVKDIFDDT
                     RSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEG
                     IFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSR
                     LDEAGLPNVDLTDDEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQG
                     GWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
                     "
     gene            complement(29366..30439)
                     /locus_tag="ACFM5C_000088"
     CDS             complement(29366..30439)
                     /locus_tag="ACFM5C_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFC6067876.1"
                     /translation="MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTL
                     LRIIAGLENADGGKILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVL
                     PKSERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLL
                     DEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQT
                     GSAEAIYRKPENAFVTEFLGETDAFEGRIEKGFWHYNGFAWKLDAQYKWQEQTATGYI
                     RPHEWQIAAEHETPMICAEIEKVHAVGALTHILVKHGKQDVHITLAGSDAARYPIAEG
                     KELKLIPKQVYVFSQNELIEYSI"
     gene            complement(30436..31296)
                     /gene="cysW"
                     /locus_tag="ACFM5C_000089"
     CDS             complement(30436..31296)
                     /gene="cysW"
                     /locus_tag="ACFM5C_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HFC6067877.1"
                     /translation="MKPYSANPNLTEPRRLRVLLIAAALGFLLLMLVVPLVAVFYEAL
                     KGGWDLYLKSLSDSEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTT
                     LLDLPFSVSPVVAGLMFVLLFGAHTALGGWLEAQGIQIIFAIPGIILATLFVTFPFVA
                     REIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGA
                     VSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIITKLQDK
                     KLAAAERNAV"
     gene            complement(31551..32387)
                     /gene="cysT"
                     /locus_tag="ACFM5C_000090"
     CDS             complement(31551..32387)
                     /gene="cysT"
                     /locus_tag="ACFM5C_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HFC6067878.1"
                     /translation="MLPLKTPGVLPGFKLSLGLTVLCLSLLVVLPFAMMAAKAAEIGW
                     GGFWNTIAEPNVLAAVWLSLRMSFYAMLTNVVFGTLVAWVLVRYEFPGKGLVNALVDL
                     PFALPTAVTGIALATLYAPNGWIGRFFEPLGIKIAFTPVGIWIALVVVSLPFIVRAVQ
                     PVLEELSGEYEEAAATLGANRFTTFRRVLLPEITPALLTGSGMMFARATGEYGSVIFI
                     AGNIPMVSEILPLIITGKLEQFDVQGASAVALFMLLVSFVILFALNVMQWALGRRSGA
                     KG"
     gene            32526..32633
                     /locus_tag="ACFM5C_000091"
                     /pseudo
     CDS             32526..32633
                     /locus_tag="ACFM5C_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            32678..33010
                     /locus_tag="ACFM5C_000092"
     CDS             32678..33010
                     /locus_tag="ACFM5C_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067879.1"
                     /translation="MQILSFQPDIAERMLEGTEGESVNENAQFVRTDNGYWIAWHEGV
                     AALLAPDTPPGIPCFWVEGAESLEELCVMVERGEFDEVEEFDGDDDEWLETAQGCGHH
                     GEACACGH"
     gene            33341..33850
                     /locus_tag="ACFM5C_000093"
     CDS             33341..33850
                     /locus_tag="ACFM5C_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003662333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HFC6067880.1"
                     /translation="MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGAKQYGKTNSTL
                     LAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYI
                     LPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQ
                     EEQAMATLF"
BASE COUNT         8214 a         7929 c         9299 g         8453 t
ORIGIN      
        1 cggtattttc ttaccgtatt ctgcgattgc ctgtcggaaa atgccgatca acctgcctat
       61 aacggcattt tcgccaaatt cgttcagaca gttttcccta agtcgggcag gttcaaaatc
      121 agagtggtgt tcatacattt tgatgagtgc gtcggcaagg gcatcgtcgt cgtcaacagg
      181 aaccaaatat ccgttgccgt ctgaaacaat agattccgca ccgccgcagc gtgttgcaat
      241 gacgggcaat ccttgggaca gtgcttcgat atagaccacg ccgaaggttt cggtgcggct
      301 ggcaaggacg aatgcgtcgc tgttcctcat caaatccaag actgcttcgg gctgcaatgc
      361 gcccaaaaat gtaacggcat gggtaatgcc caagtctgcc gcctgctgtt tcagccgctg
      421 ttcttcctgt ccgctgccgc cgatgtttag acgcagttgc gggcattgtg ccaacgcccg
      481 ggcaaaggca gtgagcagga catcgtgtcc tttgagacgg cgaaggtgcg agacggtgca
      541 gaacacgaaa tgcggtttgt tgtttttttc tctttgttca aacggtcggt tgaatattcc
      601 gcccagtatg ttggggaggt actgccattc gcagccgtat ttgtgttgca ggacgtgtgc
      661 gaaatggcgg ctgatggcga gacgtgcggc ggcgtgcgcc gccgcatttt tcataggctg
      721 ccattggtgg ggacggatca gaccgcgcgt gatggtgctg ctgtgtttcg tgacgacata
      781 ggggatgccg tatttttggg aaatcttgaa ggcaagtatg ccggcatagt tcatacagtg
      841 ggcgtgaatc aggtcgggca gcccgttttc gcggatgtag tgtttgaaag ctttcaaacc
      901 cgcacacacc cagcggatgc agtcgatgtc gatgaacgga aagcggggga agaaatatat
      961 gccgtgccat gcatagatgt ccaaaccgct ttgccgatat tttgcaaaac cgtaaggccg
     1021 gtcaggatgc ttgctgtttc tttccgcaag tagcggaaca tcggtgcaag cacggcggtt
     1081 ttgatgcctt tcctctgcaa tgccagtgcc tgattttgaa aaaaatcccg tccacatcct
     1141 gttcggattg cggataccat gaggggatga cgaggacgtg caacggttcg gacataatat
     1201 gattccgtat cggaaagacg gttattataa gacagacgca gaccgaatat ttaaattgtt
     1261 gccttacgct aatgcaattt agcgcgccga tatgctagat tggcggtttt atgagtgagg
     1321 atacggatat gttgcgttct attttggcgg cttccctatt ggcggtatct tttccggcag
     1381 cggctgaagc attgaattac aatattgtcg aattttccga atcggcgggt gtcgaggtgg
     1441 ctcaggatac aatgtccgca cgtttccaag tggcggcgga aggacgggac aaaaatgccg
     1501 tcaatgccga gtttgttaaa aaattcaaca gttttaacag aaaattgaaa aacggcagct
     1561 ttaaaaccga attggtatcg cgcagtgcga tgccgcgcta tcaatatacc aacggcagac
     1621 gcattcaaac aggctgggag gagcgtgcgg aatttaaggt cgaaggtagg gattttgatg
     1681 cgttgaaccg ttttattgct gatgttcaga cggatgcttc gcttgaatat accgatttca
     1741 gcgtgtcgcg tgaacgccga aacgaggtca tcgatcaggt cagcaaggat gctattttgc
     1801 gttttaagac gcgtgccgaa aaactggcgg gcattttggg tgcgtccggt tataaaatcg
     1861 tcaaattaaa tttgggacac atcggcagcc atatcgcggg agggggagct gctcaggcaa
     1921 aaatgcttcg tgccatgccg atggcggcaa gcgtcaatat ggagggtgcg gattctgccg
     1981 cgcagggtgt ggaggaaatc agcatcagcg tcaatgggac ggttcagttc taaccacgga
     2041 taaacaggta gatgccgtct gaaaccggat gatacggttc agacggcatt tatatttcag
     2101 gctttaggca gggtaacgcc ggtttgcccc atatatttgc cgttgcggtc tttgtatgag
     2161 gttttgcaga tttcgtcgct ctcgaagaag aggacttgcg ccacgccttc gccggcgtag
     2221 attttggcgg gcaggggggt ggtgttggaa aactcgaggg taacgtagcc ttcccattcc
     2281 ggctcgaacg gggtaacgtt gacgatgatg ccgcagcggg cgtaggtgga tttgcccaag
     2341 cagacggtca ggacgttgcg cgggatgcgg aaatattcga ccgtgcgcgc cagtgcgaag
     2401 gaattgggcg ggatgatgca gcagtcgtct tcaacggtaa cgaagttttt cgggtcgaag
     2461 tttttgggat cgacgatggt gctgttgatg ttggtgaaga ttttaaattc gtttgcgcag
     2521 cggatgtcgt agccgtagct ggacgtaccg taggagatga tgcgtttgcc gtcggcttct
     2581 ttgatttggt tcggctcgaa agggtcgatc atgccgaatt cttcgctcat tcggcgtatc
     2641 catttgtcgg acttgatgct cataatgttt tccttgtttc ttgcggtgtt cggacaaagc
     2701 attcgggaat gccgtctgaa aacggggctt atttgttttt gggcagtttc acttcttgaa
     2761 tcatgccgtt ttcacatttc ataatgaaga gggtttcgcc gttttgcgag acggtaaacc
     2821 tgccgtgtgc caggcctttt ttgaacgtgc ccgagagtac catgttgcgg aatttggtac
     2881 tgtcggaatt gaacggttcg ataaatattt cgcggttggc ggaaacggta taaacgcctt
     2941 gtccgtcgaa tttgccattt ttaaacgaac cggtataacc gcgcccgtcc cggcaacgcc
     3001 atatgccttt gcctgaagga agcccgtctt ttccgactcc gccgtcgtag gtgcagccgg
     3061 gttcttgata ggaagtcaga acggcggccg aagtggggag ggcgaacatc atggcgggca
     3121 gtaggaatgc gagatgttta agcataaggg ttattccatt ggattttggt tgacggtatt
     3181 ttgtcgtgaa aaagccgtct gaaaaatcaa tcttgccagc cgcccaaata ggaaaccagt
     3241 tcttccaaca tggtgctgac ggattccgcc atcagaattt gcgaggcgaa ggcaaggccg
     3301 gcggcatcgt cgccgttgct ttcggcttct tcctgcaata cgtcgaggta ttggatgcgc
     3361 ttgagtgtga agtcttgagt gaggataaag gcaatttgtt cgcgccacac caagcccagt
     3421 tgggtaacgg ttttaccgtt tttgacgtgt tgaaccactt cgtcggcggt taaatcttgt
     3481 ttggatactt tgacgacggg aacaatatcg cccgtacctt tgagttcgca atcgctgtct
     3541 aattcaaaac cgccttcgca atgcccttgc aacagccagc cggtcatcaa ggaagagggc
     3601 gattgcttgg tattcggcag cgaggcttcc aaaccgccca aagcttcgcg cagcttggtc
     3661 aggatgtttt ctgctttggc ggaagccgcg ttattgacga gcaggtagcc gtggcgggtg
     3721 ttaaacaccg cttctgtacg gctgctgcgg gtaaacgctc ggggcagcag gtcgtctgta
     3781 atttgctctt taagctcttg tttttcttta cggccgacat tgcgggcttc attgttttgg
     3841 atttccgcta ccttctcttc caaaatatcg cggatgacgc cggcaggcag gactttttct
     3901 tcttttttca gggcgacgcg caaggtaaag tcggcaggga aaacgagttc gggagagaac
     3961 gaaaccggtg cggcaaagcc ttcgctgaac cagtctaagc cttggcaatg ggtaaattca
     4021 gcttcagcaa gtttgtcggc aagtacgtct gcctcaggca gcttttcttt gttgagcgga
     4081 taaaaactaa tctgcttgaa ccacataatg tttcctgttg tttgaaatgt cgggaattat
     4141 ttgctgaatt gttttttcac actgactttg gttttcttct tgaagcggtt tttctcttct
     4201 ttgcggtctt cgcgtttctc aatacggttg ctcaggctga cacggcgcag cggttttttc
     4261 ttcggtttgt cttccgcatt ttcatagggg ttttctgaaa cattgtattg aattctgagc
     4321 ggcgtgcctt gcagattgaa ggctttgcgg aatgtttggg tcaggtagcg cgtatagctg
     4381 tcggaaatcg cgtgcagcga attgccgtgt accacaatta cgggagggtt catgccgcct
     4441 tggtgggcat aacgcatttt cggacgcacc aagccggcac gcggcggttg ctgacgctcg
     4501 attgcgcttt gcaggacgcg cgtgattttc ggcgtcggca tcttaatcat cgccgcgttg
     4561 taggcagcct gaatgctgtc aaacaaaccg tctataccgc gctctttcaa tgcggaaata
     4621 aagtggaact tggcaaaatc gaggaaatac agtttgcggt tgatatcgcg tttcacttgc
     4681 tcgcgacgtt cttcgctgat gccgtcccat ttattgaccg ccaccaccaa agcacggcct
     4741 gcctccaaag cgaaacctgc aatcgtcgca tcttggtcgg cgatgtcctg ctgcgcgtcc
     4801 aataccaaaa cagcgacgtt tgccgcttca accgcctgca tcgctttgat aacggagaat
     4861 ttttccactg cttcatccac tttgccgcga cggcgcacac ctgcggtatc gatgatggta
     4921 aacggtttgc cttcgcgctc gaaatcgata tggatactgt cgcgcgtcgt gccggccata
     4981 tcgaaggcaa tcacgcgctc ttcgccgaga atggcgttta ccagcgtgga tttgccgacg
     5041 ttcggacgac cgatgacggc aaaaacggga tgttttgcat cggcttcttc gacttccggc
     5101 tcggggaagt tttctaaaat ttcttcaatc aggtaataca cgccgtcgcc gtgcgcaccg
     5161 gaaataacat aagggtcgcc caaagcaagt tcgtagaact cggcggcaag cacggccctg
     5221 ttgccgcctt cgcctttgtt taccgccaga taaacagggc gcgggctttg gcgcaaacgg
     5281 tcggcaatga ttttgtcttg cggggtcaga ccggtgcggc cgtccaccaa aaatacgacg
     5341 gcatcggctt catcgacagc ctgcaaggtt tgttttgcca tttcgtgcaa aatgccgctg
     5401 tccacaaccg gctcgaaacc tccggtatcg atgaccaaat aaggtttgct gccgactttg
     5461 ccgtgtccgt aatggcggtc gcgcgtcaga ccgggcaggt cgtgtacgag cgcgtctttg
     5521 gtgcgcgtca aacggttgaa taaagtagat ttgccgacgt tggggcggcc gacaagcgcg
     5581 atggttggtt tcatgattgg gtctttctgt gtcaagtgcc gttcgggaga actgaacaca
     5641 agcaggtgtc cgttgggaca cggcagatgg ttttacggga attgccgtag gatagtgttg
     5701 tctgaaatgc cgtctgaaga gagggtggca tttcagacgg catttatttc agcgaatcga
     5761 gtttcatttg aaccaattca cgaccgacag aatcttgagg cattttttct aaagcctgac
     5821 cgtagttttt taaggcttcc tggctttttc cctgtgcggc atagacatcg cctttggttt
     5881 ccatcagcag gggggagaag tccgcttcaa ccggcgtgtc gagcgcggca agtgcggcat
     5941 cgtatttttt ttgttgcaac aacacaacgc ccagacgctg cgccgccaac gcttgaatca
     6001 ggctgtcttt ttggttggac aacacccatt tcaaatgccc tttggcaaca tcgtaacgct
     6061 gtgcgtcaaa ttcggttgcc gccgccatca gcgtggcttg ggcggcggaa atggaatgcg
     6121 ggtagctttg ttggagtttg gtcaattcgg cattgatttc gctttgcggg gctttgtttt
     6181 gcgccttttc cacgatgttt gccagcaccg ccgccgcttc ctgattttgg gaagccgcac
     6241 ggttttggta aaccgtgtat cccaagtagc cgagcgccgc caaaatcagc acggcaaaca
     6301 gccatttgcc cgtggttttc caaaaatatt taaagttgtc taactcttgt tgttcttcga
     6361 gatgggctgc catttatgcg ttcttccatt gttgtaaagt atgggttaaa tcctcggcgg
     6421 cgacagtttg ctgaccgtgt gcgccgttca tgtctttgag cgtaaccgta ccgttcgcca
     6481 gttcgtcttg cgcgacaatc agggcaaagc gcgcgccgct gttgtcggct tttttcattt
     6541 gcgctttcag gctttgatag ccggaatgct gcattacatt gaaaccttgc gcgcgcaagg
     6601 cttgtgcgta tttcatcacc tgcaagtccg ccctttcgcc ttggtgcatt gcatagacat
     6661 caggcgcagc gttcacttcc agcgagccgt attcgcccac caaaagcagc agccgctcaa
     6721 tacccatcgc aaagccgata gacggcgcag gtttgccgcc aagttcctca atcaaaccat
     6781 cgtaacggcc gccgccgcac acagtcgcct gcgcgccgag tttgtcggtc gtccactcaa
     6841 aaaccgtctg attgtaataa tccaaaccgc gaaccaagcg cggattttca atatattgga
     6901 tacccaaacc gtccaacatc gctttgaagc gtgcatagtg gttttgcgaa gcctcgccca
     6961 aataatccac cagacgcggt gccgcattgc agatttcctg caaatcaggg tttttcgtat
     7021 ccaaaacgcg caaaggattg gttttcagac ggcgtttgct gtcttcatcc aatttatctt
     7081 cataacgggt cagatattca accaatgccg cacggtgtgc cgcgcgttcc tcacggttgc
     7141 ccaagctgtt gatttccaaa gtcaggtatt cgcggatacc caatttttcc cataagtcgg
     7201 cagacatcgc gatgatttcc gcatcaatat ccggcccttc aaaacccaaa gcttcgatac
     7261 cgacctgatg gaactgacga taacggcctt tttgcggacg ctcgcggcgg aacatcggcc
     7321 ccatatacca cagcttttgc gggctgttgt acagaaggtt gtgttcgacc accgcacgca
     7381 ggcaggaagc cgtaccttca ggacgcaagc tcaaactcaa agaatcgttt gaatcggaga
     7441 aggtgtacat ttccttgccg accacatcgg tttcctcgcc gatggagcgg acaaacaaac
     7501 cggtttgctc gacaatcggc gtacggattt gccgataacc gtaagcgcac gtccaacggt
     7561 ttaccgtatc ttcaaacgcc tgccaaaacg cagccgtcag tttgaaatct ttttgttcga
     7621 caggcagaag gtcgttcatg cctttgacgg attggatttt ttgtgccatt tcaagtaaga
     7681 atgcttaaat caaattgcgg gcgattatag cggattttta agggtttgtg aggttggggg
     7741 tggtttgtgg acgggtaaaa atgccgtctg aaacagtttt cagacggcat ttgacttact
     7801 ctgcacgtgc ttgcctgatt tgttcgactg caaactccgt ctgccgcttg ggatgatgtg
     7861 tgaaaaacaa tttatttgaa attgtctcgg cttttttcgg cacaaccgcc aaaatcttac
     7921 ctgccaaatt tccctcacgg gtttgccaag catccaaaaa ctgcgccctg ctcatcgaaa
     7981 catgacccag cgacgggtcg gcaagcaaaa ccgtattgcc atctatactg cgcaataccg
     8041 agaaatgatc atccttacgg tatttcagat acacgatgac ggggattttc aactgcgcga
     8101 gctgctcgaa agacagggca tagcctttcg cttcaaaacc caaatcaggc ataatgcgcc
     8161 gcatatcctc aaacgacgcg cgcatctgct ccttatccag ctttttcaac acttcttctt
     8221 ccgtcagcgt ttgcccgtaa aaattgttca aaagcgtcgc caccgaagcc gccccgcagg
     8281 aaaaatccaa atcctgcttt acaatattga aatcccgccg cgctttccag ctttgtattt
     8341 tgactttgcc gtaggctatg gggttttctt ccgcaaaggg aaaagaatgt gcacaaagcg
     8401 gcagggcggc ggcgaggagc agggaagcgg caaaccgcct tttttgttcc attaaaaccc
     8461 tcctaaaagg ctacccggaa tttttaagca gccttttgat tggtaaacgt tacgacggaa
     8521 gccttagcct cccgattgca gtatttcaat tccaagataa atgccgcata gaaaagataa
     8581 aatacttaaa tggttttagc ggcttaaata tcttatttaa ttttattgat tgttttccca
     8641 atagtttccg caataaataa taagaagtag aataataaac aaacagaaca tgaaaataaa
     8701 aataaatctt tcatcatctc agtaataaaa ttccaaagat tttccttatt tccatcaaca
     8761 ataaaaatta tcagttcatg aataaagaat actacaaaga aaatacttcc tgccgttagg
     8821 gatatttcta atctgcttat tttcccttcg ctatatttac ctgataaata gcctaaaaaa
     8881 gctacaatca aatcatccat tttaaaaatt tctgtaaaaa cagctaatgt ccttaattca
     8941 ttttgtccaa gccgtttgcc attgcgaggg caatcataga cagcatcatt acggctgcgg
     9001 tgatttgttt tttcataaca aattcttagg gaggagataa tgtttcatca aagtcctcct
     9061 gaaaggctgc ctgaaatttc caagcagcct ttttgtttgc ttattaatcg gatagtgtga
     9121 caaatataag gtgggcggca atcattgccg taacggcagc cataactgtt ttattttctt
     9181 caaaccaaag cgagttgaga aacatgaaca tcaagaaata tgatggttct tcagttttgc
     9241 cgctgctttc ttgagttaga agataaaata tagatatggc ggttatgctg attgctgttt
     9301 ttatatattt atttaccata tcgttgggca acacccgtaa ccatacctgt tgccaaagat
     9361 cggttaaatc cccatacaac ccctgccgga cctgctgtcg cccctccaaa agctcccgcc
     9421 cctacggcaa gagtgaatgc tgtgggagaa aatctgcttc cgctaagttg ctggttcatc
     9481 atatatccga ttccgcctcc gactcctccg ataaatgcac ctaccggtcc ccaagccccc
     9541 tcagtctcct tcatctcctt ttgagaaagc tccgccaact gcatcggcgc atctgcctgc
     9601 gtgtggaaca cttggttttc aaatgtctga ttgtccaagc cgtttgccat tgcgggggca
     9661 atcatagaca gcatcattac ggctgcggtg atttgttttt tcataataac tcctttggat
     9721 tacaaggttg gaaaatcaaa acctgcttaa aatgtatgct gtacgccaaa tttcagttcg
     9781 gaactgcttt gccctgaaac gttgaaacgt gcggatgcgt ttaaagccgt ggttttggtg
     9841 aaaccgaaac ctgcgccgaa atgggcgtag gtggatgtgt ttcttgcgga ttcttttttg
     9901 ccgtctatgc ggtcgggctg cctgcccaac cattggatgc ctccggtcag gctgattctg
     9961 tcgttggcgg caaatgagat gttggggttg agcagcaggt agttgcccga tttgtagcgg
    10021 atgctgtctg aaaggatttt gctgccgttg atgcggtagg cggcggttag ggagaggacg
    10081 acggggtcga tagctttgta ggtggtcgcg ccaatcagcc atgatttgcc tgacgaggct
    10141 ttgccgcgtg atttttcgta aagtatgcct tcgagaaagc caataagggc gggatttttg
    10201 tcgtctttga ggaaggtatg gctgataccg gcggatatgt cagacatccg tttgttgcgg
    10261 gttttgccgt tgccgtcgag tttgcgttct tcgtgccaca gatagctgcc gctgccgtaa
    10321 atgtcggtat tgccggtcag tccgtagcgc aaaccgagcg tgccggcgag catatcggta
    10381 ttgctgccgt tttcttggat ttcggtcgga atggggataa acgaggttgc gccggtttga
    10441 atgtaaaccg gtgcggcaag tgcggcgcgg ctgttttcgc tattcaggta ggtaagggaa
    10501 gtttccagtt tccatttgcc cttgtcggtt attatgtctt caatcgtcaa gggcaggtcg
    10561 gcataagtgg ataaaggcag gatggcgggc aaggcgggca aaaagatgcg cttcatattt
    10621 ctcctattga tattaattct tatttactga taataatgaa tatccgataa tcttgtctaa
    10681 ataaattttt aaatcaaaaa aaacgatata tttgttttta tcaattatgt tttgatatgc
    10741 cgtctgaaaa gtttgtgaaa aacggttaca atccgccgca tgaaaaaacg caataatcct
    10801 cttccgttgt tgaacggtgt caaacccagt tatttggtgc tgccgcatga aaagcagttt
    10861 tacgggctgc cgctgctgca ttttctgtgc atccgctttc cttttgtggg cgcggatgat
    10921 tggcgcaggc ggttgaacag cggttttgtg gtcggttcgg atggtgcggc gttggacgaa
    10981 cattctttgt tcgagccggg taaggtgatg ttttattacc gtgaaaccag ccgtgagagc
    11041 gagccgcgta ttccgtttga agaaaagatt ttgcatattg atgagcattt gattgtggtg
    11101 gacaaaccgc attttctgcc cgtcatcccc agcggcaggt ttttgcggga aaccctgctc
    11161 acgcgcctgc gtttgcggcc tgaattgcag catttgaatg ttgaggacat tacgccgctg
    11221 caccgcttgg acaaggatac ggcaggcgtg atgctgctgt cgcataatcc tgccacgcgc
    11281 ggagcctatc agacgatgtt tcaaaacaaa acggtatgga aaacgtatga ggcgcttgcg
    11341 ccgacaagga cggatttgcc gtatccgctc gatgtggttt cgcgtttggt gaggggtgag
    11401 aaatttttta cgacgcaaga ggcggaaggc gaaccaaacg cacatacgac ggtcgaactg
    11461 attgaaaaca ggggggaatt cagcctttac cgccttacgc cgcatacggg caagaaacac
    11521 cagttgcgcg tgcatatgat gggtttgggt atgccgctgt tgaatgacgc gctctatccc
    11581 gtgccgtctg aagcgggcag cgaggattat cggaaacctt tgaagctatt ggcaaaaaag
    11641 attgcgtttg cagatccttt gtcgggtcgg gaaagggtgt tttgcagcgg attttgccta
    11701 taatgagagg gaacgcaaac ccgtatcggc ggatgccgcc gatacgggtt ttacattatc
    11761 gatgccgtct gaaaggggtt ttatccgttc aggcatacgg gcgcgaagcg gaggatggtg
    11821 tcgcgcagga cgatgagttt gccgtgaaag aaatgcgtgg aaccggcgat ggtaatgacg
    11881 ggcaaatctt gcggttccgc ccatttcagt gctttcccga tttcgacgac ttcgtcttcc
    11941 gcgccgtgta tcatcagcgt tttggcaaca ttgggaacgg cggacggctc ggggcggccg
    12001 gtatagtggc agactgccgc gccgatgagc agcaataaat cgggtatgcg cgcttgtgcg
    12061 gcaaatgtgg cgacataacc gccgaaggag aagccggata aggcaaattc gggggcttcg
    12121 ggatgttggg cacgagcata gtcgatgacg gcgaggcagt cttgcgtttc gccgcgtccg
    12181 taatcgtgtg tgccttcgct gccgcctacg ccgcgaaggt tgggcaggta gcagtggaag
    12241 ccgagtttgc ttaaggcttt ggcggcagtt tggataactt tgttggtgtt tgttccgccc
    12301 tggagggggt tggggtggtt gatgacggca acaccgcgtg ccggtacttg ttcggacggg
    12361 atatggatgg tttctaaaat gccggcaggg ccgggtatgt gtatggtttc aggtttttgc
    12421 ataatggttt cctcttgatt ttccgcatat tccgatgcag ccgcgaagat ggcggcttaa
    12481 aggtggaaat gcttgccgtt gttggggttg gatgctttca ggtcggcgag catgcggtgg
    12541 aagtccaatc cgtaagcgtt gctcagtttg tcggcacgtt ttttgagttt gtctatgttt
    12601 tgctctttgg ggctgctttg gaaggccatt accgcgacat tgccgtggct ttcggcagga
    12661 agttccaaga cgcgcccttc aaaaacgctc aacaaccgtt cgatgaagcg ttggtagcgt
    12721 ttgtcgccgc tccaccagtt ggttacgaat atgccgtctg aagagagtgc gtttcggcag
    12781 tctcggaaaa acggttcttc aaccagcgca tcgatgattt gttcgccgtc gaacccgtcc
    12841 accaaaatca catcggtgtt gtggcggaag actttgatat attctgcacc gtctgcttcg
    12901 ataatttcaa atttctcgcc ctcgaaaggc aactcgaaca ggctgcgggc aatggcgatg
    12961 acctgcgggt tgatgtccac ggcggtttgg cgcgtgtcgg gcaggtaggt gtctatccag
    13021 cgtgcaaacg aaccgccgcc caagccgatt tgggtgatat gctgcggaag agcgtcggta
    13081 aacagcagcc atcccatcat ggcacggctg taagagagta ccagctcgga cgggtggtcg
    13141 aggttcattg agctttggat ggtgtcgctg cccaagtgaa gcgaacggat attgccttct
    13201 tcggaaatgc cgacttcggg aaagctggat tttgcaggac gcaggcggcg gtagggatgt
    13261 cttgccatcg gtgtgaacgg tcggtttgaa aggcagatat tttatcagaa tgccgatggt
    13321 tgtcctgctt caaattaatt tcttttcaaa taaattactt attcggattt gccggggctt
    13381 tcggataaat tccttgccaa ggtgcggcat tgcctgcata attcgctttc tttgccggta
    13441 tagctcagtt ggtagagcac ctgacttgta atcagggggt cccgagttcg actcttggtg
    13501 ccggcaccat ttctgctgat ggtgttgcaa aacatttcag taagccggta tagctcagtt
    13561 ggtagagcac ctgacttgta atcagggggt cccgagttcg actcttggtg ccggcaccag
    13621 atttgacagt ccgattgtgt aaaacagtcg ggctgttttg catttgcggc acggtcggtg
    13681 gcagggctgc gggcatttca ctataatagc ccgtttcaaa ctgaaaaggc cgtctgaaaa
    13741 gggcggggta acaatatctg atgattactg tgaacacact gcaaaaaatg aaggcggcgg
    13801 gcgaaaaaat cgctatgctg accgcttacg aatccagttt tgccgcgctg atggacgatg
    13861 ccggcgtgga aatgctgctg gtcggcgatt ctttggggat ggcggttcag gggcggaaat
    13921 cgacgctgcc cgtcagcctg cgcgatatgt gttatcacac cgaatgtgta gcacgcggtg
    13981 caaaaaatgc gatgattgtc agcgatttgc cgtttggtgc atatcagcag agtaaggagc
    14041 aggcgtttgc cgccgctgcc gaactgatgg ctgccggcgc gcatatggtt aaactcgaag
    14101 gcggcgtgtg gatggcggaa acgactgaat ttttgcaaat gcgcggtatt ccggtttgtg
    14161 cgcacatcgg tctgaccccg caatccgtgt ttgctttcgg cggatataaa gttcaggggc
    14221 gcggcggcaa ggcgcaggcg ttgcttaacg atgccaaggc gcatgacgat gcgggggcgg
    14281 cggtcgtgct gatggagtgc gtactggcgg aactggcaaa aaaggtaact gaaactgttt
    14341 cctgtccgac tatcggtatc ggtgcgggtg tggattgcga cgggcaggtt ttggtgatgc
    14401 acgatatgct cggcattttc ccgggtaaga cggcgaaatt cgtcaaaaac tttatgcagg
    14461 ggcatgatag tgttcaagcg gcggttcggg cgtatgttgc cgaagtcaaa gccaaaacct
    14521 tccctgctgc ggaacatatt tttgcagatt gaacggttta catgcagcat gccgtctgaa
    14581 agccgtttca gacggcattt tgttttgccg tgcgcggcgc gtataatcgg cgcgttttgt
    14641 cgggcaggaa gcccgaaaga taaggattac cgttatgcaa atcatacata ccattcgaga
    14701 actgcgcgcg tggcgtaaaa atgcgggaaa ggtggcattt gtgccgacca tgggcaatct
    14761 gcatgaaggg catcttgcgc ttgtgcgtga ggcgaaaaaa cgcgcggaca gtgtcgtggt
    14821 cagcattttc gtcaaccgcc tgcaattcgg tcagggcgag gatttcgaca aatatccgcg
    14881 tactttgcaa caggatgcgg acaagctgga agccgagggt gttgccgttg ttttcgcgcc
    14941 cgatgagaaa gaactctatc cgaacgtgga acagcgttac aacgtcgaac cgcccaatct
    15001 gcaaaatgag ttgtgcggca agtttcgtcc gggacatttc cgcggggtgg cgacggtggt
    15061 gtccaagctg ttcaatattg tcgcgccgga tgttgcctgt ttcggcaaaa aagactatca
    15121 gcagcttgcc gtgattaaag gtttgaccga ggatttgaat tttgatgttg aaatagtgcc
    15181 tgtcgatacg gggcgcgcgg aagacggttt ggcactctcc agccgcaacc agtatttgag
    15241 tgcggcggaa cgcgacgaag caccgcgcct gtactgcgaa ttaaaggctg ttgccgaatc
    15301 cttggcgcag ggcagtttgg attatgcagg tttggagcgg caggctgccg accatttgac
    15361 cgctgcgggc tgggtggtcg attatgtcga aatccgccgc gccgatacgc tcgaagtggc
    15421 gcgggcggga gataagaaac tggtggtctt ggccgccgcc cgtctgggga cgacgcgcct
    15481 gattgacaat ttggaaataa aactccctta aaccgcaagc gtcgggaatg ccgtctgaag
    15541 cggatttgcg tttcagacag catttatttt tttgaacggg gtttcgcaaa tctacaaacg
    15601 attctgcttg tgataaagtt acgcctgatt atatgccgtc tgaaagttcg gacggatgtc
    15661 ggataaagga tgattatgct acctaaccgt ttcaaaatgt taactgtgtt gacggcagcc
    15721 ttgattgccg gacaggtatc tgccgccgga agcggtgcgg gggatatgaa acagccgaag
    15781 gaagtcggaa aggttttaag gaaacatcag cgttacagcg aggaagaaat caaaaacgaa
    15841 cgcgcacggc ttgcggcagt gggcgaacgg gttaatcaga tatttacgtt gctgggaggg
    15901 gaaaccgcct tgcaaaaggg gcaggcggga acggctctgg caacctatat gctgatgttg
    15961 gaacgcacaa aatcccccga agtcgccgaa cgcgccttgg aaatggccgt gtcgctgaac
    16021 gcgtttgaac aggctgagat gatttatcag aaatggcggc agattgagcc tataccgggt
    16081 aaggcgcaaa aacgggcggg gtggctgcgg aacgtgctga gggaaagagg aaatcagcat
    16141 ctggacggac tggaagaagt gctggctcag gcggacgaag gacagaaccg cagggtgttt
    16201 ttattgttgg cacaagccgc cgtgcaacag gacgggttgg cgcaaaaagc atcgaaagcg
    16261 gttcgccgcg cggcgttgaa atatgaacat ctgcccgaag cggcggttgc cgatgtggtg
    16321 ttcagcgtac aggggcgtga aaaggaaaag gcaatcggag ctttgcagcg tttggcgaag
    16381 ctcgatacgg aaatattgcc ccccacttta atgacgttgc gtctgactgc acgcaaatat
    16441 cccgaaatac tcgacggctt ttttgagcag acagacaccc aaaacctttc ggccgtctgg
    16501 caggaaatgg aaattatgaa tctggtttcc ctgcacaggc tggatgatgc ctatgcgcgt
    16561 ttgaacgtgc tgttggaacg caatccgaat gcagacctgt atattcaggc agcgatattg
    16621 gcggcaaacc gaaaagaagg tgcttccgtt atcgacggct acgccgaaaa ggcatacggc
    16681 agggggacgg aggaacagcg gagcagggcg gcgctaacgg cggcgatgat atatgccgac
    16741 cgcagggatt acgccaaagt caggcagtgg ttgaaaaaag tgtccgcgcc ggaatacctg
    16801 ttcgacaaag gtgtgctggc ggctgcggcg gctgtcgagt tggacggcgg cagggcggct
    16861 ttgcggcaga tcggcagggt gcggaaactt cccgaacagc aggggcggta ttttacggca
    16921 gacaatttgt ccaaaataca gatgctcgcc ctgtcgaagc tgcccgacaa acgggaggct
    16981 ttgagggggt tggacaagat tatcgaaaaa ccgcctgccg gcagtaatac agagttacag
    17041 gcagaggcat tggtacagcg gtcagttgtt tacgatcggc ttggcaagcg gaaaaaaatg
    17101 atttcagatc ttgaaagggc gttcaggttt gcacccgata acgctcagat tatgaataat
    17161 ctgggctaca gcctgctttc cgattccaaa cgtttggacg aaggcttcgc cctgcttcag
    17221 acggcatacc aaatcaaccc ggacgatacc gctgtcaacg acagcatagg ctgggcgtat
    17281 tacctgaaag gcgacgcgga aagcgcgctg ccgtatctgc ggtattcgtt tgaaaacgac
    17341 cccgagcccg aagttgccgc ccatttgggc gaagtgttgt gggcattggg cgaacgcgat
    17401 caggcggttg acgtatggac gcaggcggca caccttacgg gagacaagaa aatatggcgg
    17461 gaaacgctca aacgtcacgg catcgcattg ccccaacctt cccgaaaacc tcggaaataa
    17521 tgcaggtcca tcctttcaga cggcataagg tttgccggga agccggggca ttcgggcaaa
    17581 cggcacgcag ttcgcacgcg ttattgcacg gcacaccgaa cccatcggcc ggcaggatgg
    17641 catccgttaa ggaaattctg atgaaacaca ctgtatccgc atcggtcatc ctgcttttga
    17701 ccgcttgcgc gcaattacct caaaataacg aaaacctgtg gcagccgtcc gaacacaccc
    17761 gcagtttcac ggcagaaggg cggttggcag tgaaagcgga agggaaaggt tcgtatgcaa
    17821 atttcgattg gacataccaa ccgcccgtgg aaaccatcaa tatcaatacc cctttgggca
    17881 gtacgctcgg gcagttgtgt caagacaggg acggcgcatt ggcagtggac ggcaaaggaa
    17941 atgtctatca ggcggaaagt gcggaagaat taagcaggca gctggtcggt ttcaaactgc
    18001 caatccaata tctgcatatc tgggcagatg gcaggcgtgt ggcgggcgcg ccttaccgca
    18061 tcctgccgga cggcatattg gaacaatacg gttggactgt cggcagaacc gccgacagtg
    18121 gggggcaagt ccgaacgttg caactgaata acggaaattt gaacatcagg ctggttttca
    18181 ccgaaatcgg tatgccgtct gaaactgaaa ccctggaacg ctgtgcggcg cgcacgagat
    18241 aaggcggaca gatgaatatt gcggacggac ggcaggcgtt tcccgcacct gcaaaactga
    18301 atctcgattt gaggattact ggaaagcggg aagacggtta tcacaatatc gaaagcatat
    18361 tctgcctgat agatttgcag gataccgtat atttgaaact aagggacgac ggcaaaatca
    18421 tcctgcacaa tccggttgat ggaatgccgc aggaagtaga tttaagctac cgtgccgcat
    18481 cgttgctgca aaaatatgcg cgcaaccccg ccggcgtgga aatatggctg gacaaaaaaa
    18541 tcccgacagg ggcgggtttg ggcggcggaa gctcggatgc ggcaaccgtt ttgctggtgt
    18601 tgaaccgttg gtggcagtgt tcccgaacga cgcagcagct gattgacttg ggcgcaactt
    18661 tgggtgcgga cgtaccattt tttattttcg gaaaaaatgc ttttgcaagc gggataggtg
    18721 aaaaactgat aggaatggat attccgaaac agtggtatgt catcgtcaaa ccgcccgtcc
    18781 acgtttccac tgcaaaaatt ttcacacacg aaggcttgac acgaaattcc gcctcaagca
    18841 taatgccgac tttccaaaac ctgcaaccgt ttagaaatga tatgcaggca gttgtattta
    18901 aagaataccc tgaagtttgg aaagcctatt ccgaattgtc ccgatatgga tttgccttaa
    18961 tgacaggttc tggtgcgtgt gtattcacgg cgtgtcaaga tagggatagc gcatacaata
    19021 tataccgaca agtttcagat ttgtacgagg catatttggc agagggtctt tcaaaacatc
    19081 cttggttgtc cgtataaaca ttgttgggga gtcgtcaagc ggttaagaca ctggattttg
    19141 attccagcat gcgaaggttc gaatccttcc tccccagcca agtcaaacga gttggggagt
    19201 cgtcaagcgg ttaagacact ggattttgat tccagcatgc gaaggttcga atccttcctc
    19261 cccagccagc cctttttggg gagtcgtcaa gcggttaaga cactggattt tgattccagc
    19321 atgcgaaggt tcgaatcctt cctccccagc cagataaaag cgtgtaagcc tgcttacacg
    19381 cttttatttc atagaaataa aaatattgaa atgcctttgt ttgtgtcgga tgttgcaggt
    19441 ataatgtcgg gcttggtaca agcagaggga agcattgtgt tttctgagcg gaagttaaac
    19501 ataaaatcag gtgagaatat ggctgcgtac gacagtttga tggtatttac aggcaatgcc
    19561 aatcccgaat tggcacaacg tgttgtcagg catttggaca tttctttggg caatgcttcc
    19621 gtatccaagt tttcagacgg cgaagttgcc gtcgaactgt tggaaaacgt acgcgggcgc
    19681 gatgttttca tccttcagcc gacctgtgcg ccgaccaatg acaacctgat ggaaatcctg
    19741 acgatggcgg atgcactgaa gcgtgcttcg gcaggtcgta ttaccacagc cattccgtat
    19801 ttcggctatg cgcgccaaga ccgccgtccg cgttccgtcc gcgttccgat ttctgccaaa
    19861 ctggtggcaa atatgctgta ttcggcaggg atcgaccgtg ttttgactgt cgatttgcat
    19921 gccgaccaga ttcaaggttt cttcgatatt ccggtggaca atatttatgc caccccgatt
    19981 ctgttgaacg acatcaaaca acagcggatt gaaaatctga ccgtcgtcag cccggacatc
    20041 ggcggtgtcg tccgcgcccg cgccgtggca aaatccttga atgccgactt ggcaatcatc
    20101 gataaacgcc gcccgaaagc caatgtggca gaagtcatga acatcatcgg cgatattcaa
    20161 ggcagaacct gtctgattgt ggacgatatg attgacaccg cgaatacctt gtgtaaagct
    20221 gccgtcgccc tgaaagagcg gggggcggaa cgtgttctag cctatgccag ccacgctgta
    20281 ttctccggag aggcggtcag ccgtatcgcc tcatccgaaa tcgaccaggt ggtcgtaacc
    20341 gataccattc ctttgtctga agcggctaaa aactgcgacc gtatccgtca ggtaacgatt
    20401 gccggtctgt tggccgaaac cgtccgccgc attagcaatg aagaatccgt ctcatatctt
    20461 ttcaatgaag aagtgatgac aggcagcatg ttgctgccat aagcccgaag ccgtcttaag
    20521 ctggtcgcgg ccgatgacgg cgattttacc taacttggag tatttaacat gacttatgaa
    20581 attcaagctt ctgttcgtga agcacaaggc actggtgcga gccgccgcct gcgtcgcgaa
    20641 ggccaaatcc ccggcattct gtacggtgaa ggtcaagagc ctgttgcaat cgctgtggat
    20701 cacaaaaccg tattctacgc attggaaaaa gaatctttcc atactgcgtt gattaagttg
    20761 tctctgaacg gtgaaaccaa agacgttatc gtccgcgatt tccaaatgca cccgttccgc
    20821 cgcgaagttc aacacatcga cttccaagct gtgaaagccg atcaacttgt acgcatccgt
    20881 gttcccctgc acatcgttaa cgctgaaaat tcccaagcgg tcaaactgca aggcggccgc
    20941 gtatctctgt taaacacttc tgttgaagta gttgctttgc ctgccaacat ccctgctttc
    21001 ttggatttgg attgtgccga agtggttgcc ggcgacattc tgcacttgtc agacatcaaa
    21061 ctgcctgaag gtgtagaaag cgtttccctg aaacgtaacg aaaatctggc tgttgctacc
    21121 gttaccggta agaaacgcta attgattgaa aagcaggcgg tacgtatatg atgcgtaccg
    21181 ccttattgtt tttggctgtg tttcaatatt tggttgattt catccgttta taagggaaaa
    21241 ccgcttattt ccgttcgggt ggaaatttat ccagacgtat tgcgcgacaa cggatggttg
    21301 gctcaaaaac ggcatttcgt accggatgaa aatgaagaag atatgtcgtt cacattccgg
    21361 tagctgtccg gctcgaaccg gctatcagag atagtcggtc aattttcacc ctgaaaatca
    21421 cttttctttt aacttgcaac atattccgat aaaatggaca ctttgtaagt aatcattgat
    21481 ggaagacgca attatggcaa ccgaaccgaa ccgaaccgaa ccgaaattat acacgattta
    21541 gaagataatt tcaaacaaaa caatatatta aaactcaaac aactctttcc cgaagtcttt
    21601 tgtgaagacc aaattgactt tgaaaagctc aaactcgtcc tcggcgcaga aaaccttgcc
    21661 ggtgcgggcg aacgttatca actcgattgg gcgggcaaaa ccgcctccta tctcaacctg
    21721 caaagcccca cttcccgcac cctcgtcccc tgcaaagaag aatccgcaga tttcgacggc
    21781 acgcaaaacg tgtttatcga agccgaaaac ctcgaagcac tgaaaatcct gcaaaaatcc
    21841 tacgccggca gcgtaaagat gatttacatc gacccgccct acaataccgg caacgattcc
    21901 ttcgtctatc ccgacaaatt ctccgaaagc cgcgaagaat acgcccgccg cgtgggcgat
    21961 accgacgacg cgggttacct gaagcgcgac ggcgtgttcc agggcgcgtg gcgcaaaaac
    22021 ggcaaagaca gtggccatta ccacagcaac tggctctcta tgatgctgcc gcgcctgcat
    22081 ctggcgaaaa ccctgctgcg cgaagacggc gtgattttta tcagcattga cgacaacgaa
    22141 caggcgcagt tgaaattgtt atgtgatgaa gtgtttgggg cggagaattt tgtcggtcag
    22201 tttccttggc gcaaacgcac ggcaaaatcg gacgtgccgt tcggcgtttc cgccgattat
    22261 gaatatctgc ttgcctatgc ccgcagtaat gcctttattg ccagtatcga tgcggaagaa
    22321 cgcagatatt ttgaaaccga tgatttcccg aatcgcccgt ggcggacgca tgatttgact
    22381 actcaaagaa atgccagtga acgaccaaat agttttttca ctatggttaa tcctaaaaca
    22441 ggcaaagaat atccggcgaa tccaaatgca acttggcgtg ttactaagga tacatttcaa
    22501 gaatattaca atgcgggaaa aatcgttttc cccgatgatt acgatttcct caaaattaaa
    22561 aaccccgtta tgcgttattt taaagatgac gacatgaaga aagacggaga gcgcttcgga
    22621 cgtaaggcag tcagtacacg gctacctgaa aatgtaggta tgtcgctgaa cggtacaaaa
    22681 gaaattaccg aactgtttaa aagcaagttg tttgattttc ccaaaccgtc atccctaatt
    22741 aaatatttac tgcaaatcct ccatgtttca gacggcctca tcctagactt cttctccggc
    22801 agcggcacca ccgcccatgc cgtgatgcaa ctgaatgccg aagacggcgg caaccgccgt
    22861 ttcatctgtg tccagctccc cgaagaaacc gacgaaaaat ctgaagcgcg caaggcgggt
    22921 ttcgacacga ttgccgaaat tgccaaagaa cgcatccgcc gcgcaggcag gcagatttca
    22981 gacggccttc aagacggatc ggaaacagat acgggcttta aagttttcaa acttgccgaa
    23041 agcggtttca aacaatggcg gcagcccgag cagtccgata cggaagccct gcaacgcgaa
    23101 ttgtcgttga atatcgattc tgtgctgtcc gaaacgtcgt ctgaaaatct gctctacgaa
    23161 ttgatgctgc gtatgggctt gaagctgact tgcaaggttt cgtttttaga cgacgtatat
    23221 ttcgtggaag acgaggatac gggcgggctg tacgctttcc tgctgaaacg cgtggatcaa
    23281 ggtttgattg atgccgtgct ggcgaagcat cccgctaagg tggcggcatt ggacaggctg
    23341 tttgagggcg acgatgcgct taaaagcaat accgtattgc agatgaagga tgcgggcgtg
    23401 atgttcgagt gtgtgtagtc agccgaaagc gggaagtgcc gtctgccgtc attcccgcgc
    23461 aggcgggaat ctagaaactc aaagttgcaa gaatttatcg gaaatgactg aaacccaacg
    23521 aacctagatt cccactttcg tgggaatgac gatatatcag tttctgcgcc gacaggtctg
    23581 gattcccgcc tgcgcgggaa tgacggcaaa gaggtagatt ttccgcgcga cagcggatag
    23641 aaggaaataa aaatggaact gaaatttgaa gaactgccct atcagcttga tgcggtaaat
    23701 gccgttgcga atctttttgc agggcagccg aaccatgccc ggacattcga tttgaccagt
    23761 caggggacgg ggcggtttgt cggcaacggc ttggatttgg attgggaaac gctaggcctg
    23821 aatctgaaca cggtgcaaaa gcaaaatgga cagcctgaaa cggaaatcgg cgcgcacggg
    23881 ctgaattttt ctctagaaat ggaaacgggt acgggcaaaa cctatgtcta tctgcgcacg
    23941 atttacgaat taaaccgcag ttacggctgg aagaaatttg ttattgtcgt accgagcgta
    24001 ccgatacgcg aaggcgtgtt gaaaagcctg gaaattacga aggcgcattt tgacggagtg
    24061 ttcggcaggc ccgtgatgcg ttatgcggaa tattcaagca gccggctatc ggacttgcgc
    24121 acttttgcgg taaacgacca catcgagatt ttggtgatca atatccagtc gtttgaaaaa
    24181 gatggaaacg ttatcaataa ggtaaacgaa agcggggaaa cgccgattaa gtttattcag
    24241 gaaacgtgtc ctatcgttat tatcgacgag ccgcagaata tggaaacgga aggccgtctg
    24301 aacgctttgg aatcgctcaa tccgctcttt accctgcgct attcggcaac gcataaacaa
    24361 ccgtaccaca aggtttacag cctgaatccc gtgcaggcat acaatttaaa gctggtaaag
    24421 caaatcgaag ttttgccggt attggcggaa aacgatgtga acggcgcatt tgtggagctg
    24481 ctggaagtaa agcaggcggc caaaggccgt ccgaaagccg atttgaacat tcattatcag
    24541 gataaaaagg aaaccaagaa gaaaaaggta tccgtcaaat gggaagacga tttgtttgaa
    24601 aaatcgggcg gtaacgaagc ctaccgccac ggtttcatta tcgacggcat ggatttcgat
    24661 aagcaggaat tggcgttctc aagcggtaaa accattacgc gcggcggaga cggcgatgcg
    24721 gtgcgcgatg aaattatgaa aaaccaaatc cgcgaaacgg taagggagca tttggcgaag
    24781 gagaaacggc tgaatccgct ggggattaag gtgttgtctc tgttcttcat cgaccgtgtg
    24841 gagaattacc gtacagaaga cggaacggca ggcaagtttg ccctttggtt tgaagaaatc
    24901 tatcgggaac ttgcaggcaa taccgatacg gcaggcgtac acgacggcta tttctcgcaa
    24961 gacaggaaag gccgtctgaa aaacaccgac ggcacgacgc aggcggacaa cgatacctac
    25021 cgcctcatta tgcgcgacaa ggaaaccctg ctttcctttg acagcccgct gcgctttatc
    25081 ttttcccatt ccgcactgaa agaaggctgg gacaacccca acgttttcca aatctgcacg
    25141 ctcaacgaaa cccgttcgcc gctgaaaaag cggcaggaaa tcgggcgcgg gctgcgtatc
    25201 gccgtcaatc aggaaggacg gcgcgtgcgc gatgaaaacg tgaacatact gaccgttgtg
    25261 ccgaacgaaa gctacgaatt gtttgccgcc aatctgcaaa aggaatacga agacgaatgc
    25321 ggtattaaat ttgccgccga aaacatcaaa aacggcaata agaagaaaaa acagttattc
    25381 cgcaaagatt tcccgctcga ccccgaattt caggcaattt gggacaagtt gaaatacaaa
    25441 acgcgctatc gcgtgcgctt cgatacggaa gaattgatca aacaggcttc ggaagcggtg
    25501 gcaaacctgc cggaaatcca aaaaccgaaa atccgcatcc gcaaggcgca attaaaacaa
    25561 tcacaaacct acggtatcga aacagttgaa attgccggcc gcagccgcga aatggacgtt
    25621 caatgggaga ttccggacat actcggcgag attcaaagaa aaacggggct gacgcggcgc
    25681 acggtgtacg aaatcatcat acagtcaggc cgtctgaaag atgtagccgg taatccgcaa
    25741 cgcttcatcg accttaccgc cgaagcggta aaccgcagcc tgcacgcgtt gatggcggca
    25801 ggaatcgagt atgagagaac cggcgaagtg tacgaccaaa agctgttgga agatatggcg
    25861 cgcgaaggta tcgagtttta cgaaaacggt tttacattca cagtaagcaa tccgcaaaaa
    25921 accatttgcg aaaactacat ccctttggat tccggcacgg aaaaagcctt tgcccaaaat
    25981 tgcgaggatt atgatgcgaa aaatgaagga ggcgtggcgt tttacttcaa actgcccggc
    26041 tggttcaaaa tcccgacccc gctgggcaat tacaatcccg attgggcggt ggtaaaacag
    26101 gttcgggata aagtgtattt cgttgcggaa accaaaaaca ccggcaaagg cattcagacc
    26161 ggcgtggata tggacaagct gcgccaaaat gagaggctga aaatcaaatg cggcaagcgg
    26221 cattttgaag cgctgggcgg tttggcatac cgtgttgtgg aaaaagtggg ggatttaaag
    26281 tcggaaaaag aggagcaggc ttaaaacaaa caggtgtaat cgtagtatgg cgatgttgga
    26341 ttggggcggc ggcaaccgaa gatgcggata tggtaatggc tttgattggg taaaccgatc
    26401 ggggactgaa gattgtttca gacggtctgt tgattttctt atttcggaaa tgggaagatg
    26461 gaaggctatt gccctgtcag acgcgtccaa agcctttgcc accggcttct tttttctaca
    26521 ttttccagtg cgacgatttc tttttcggca agggtgtatc cgttttgtct gattttgatt
    26581 tttcctaaaa tctgcccctt ttttaccggg gcgggaatcg gctgtatggt ttccaaaatt
    26641 tgttcggttg ttttcgcttc cttatgtggc agagtgatgt aggcttcttt gaggaagcct
    26701 gcgcggacgg tttttttgct gcctccggaa atttggattt gggcaacggt tttgcctttc
    26761 ggatatattt tgggcgtatc gaaggcttgc aatgcccggt tcagcagctt gctgttgtct
    26821 gatgcgcgtg tttccgccga ttccgaaccc aatgtgatga caaggatgtg cctgccgttg
    26881 ccggagtatg acacggcaag gttgtagccg ccgctttctg tgtgtccggc tttcagaccg
    26941 tttacattgt tgtccctata taaaaggata ttgcggttgt tttgctctat atttttgaat
    27001 ttgaaagatt tgatggaaaa cagcgggtaa tattccggaa agtcgcgcat caatgcttca
    27061 gacagcaggg cgaggtcttt ggcggtggaa acctgtcctt ctctactcaa gcctgtcggg
    27121 tttttgaata cagtgttctt catgcccaag cgtcgggctt ctttgttcat ttgttgcaca
    27181 aaattttcaa tcgagccgtt gcccagtcgg ccgacaaggg ttagggcggc atcgtttgcg
    27241 gatagtgcaa tcatgccttt taagagtttg tcggtgctga ccgtatcgcc gggacgtaca
    27301 aacattctgc ttccttctga agcccatgcg gattcgggta tttttaagtt ttcttcagat
    27361 cggatatttc ccgatttcat gtttttgaaa accagatatg cggtcatcag ttgggttagt
    27421 gccgccggtt cgacaggggt attgatgttt ttggcggata aaatctgttt gctttgaagg
    27481 tcgataacga tgtgtgccgc tgtgagggtt tcgggtgttt ggaacgtggg ggcggcgtgt
    27541 accgccggtt tgttgggcgc gggcgatgcg gccgttgcgt gagaaacgcc taagatgatg
    27601 gaaagcagga cgggcaggat tttatgtgct gtcatgaaat attctaattg tgtgcgtgtt
    27661 tcagtctgcc gattatacgc ttagggtgtc tgatcgggcg gatttttctt gctttcgcgc
    27721 cgtcttgggc gtatggtttt gggttttgcg attttaataa accgattatc ccatattgaa
    27781 ttatgaacac gccccttcct tattccaatt acctcatccg catcctgacg gcatctgtct
    27841 atgatgtcgc ggtcgaaacg cctttggaac cggcacgcag cctttctgta cgtttgaaaa
    27901 acaacatcct tttgaaacgc gaagatttgc agccggtttt ttcgttcaaa atacgcggcg
    27961 cgtacaacaa aatgtccaag ttgccgaaag atgcgctcgc ttgcggcgtg attgcggcaa
    28021 gcgcgggcaa tcacgcacaa ggcgtggcat tgtccgcaca gcgtttgggt tgccgtgccg
    28081 ttatcgtcat gccggagact acgccgaaaa tcaaagtgga tgcggtcaaa agccgtggcg
    28141 gcgaggtggt tttgcggggc gtttcataca acgatgccta cgattatgcg atggagttgg
    28201 cggaaaaaga agggttaacc tatatcgcgc cgtttgatga tcctgatgtg attgcgggac
    28261 aggggacggt ggggatggaa attgtcagcc agcatcccga tccaatccgc gccgtattcg
    28321 taccgatagg cggtggcggt ttggcggcgg gcgtggcggc atttatcaag caggtccgcc
    28381 ccgaaatcaa agttatcggc gttcagacca acgattcctg ctgtatgaag cagtcggtcg
    28441 aagcgggtga aatcgtccat ttgaaagatg tcgggctgtt ttcagacggc actgcggtca
    28501 aagtcgtcgg aaacgaaacc ttccgcctct gcaaagaact tttggatgaa atcattacag
    28561 tcgataccga tgcggtttgc ggcgcggtca aggatatttt cgatgacacg cgcagcatta
    28621 ccgagccggc gggcgcgttg gcgttggcgg gtctgaaagc ctatatcgcc cgagaaggcg
    28681 cggaaaacca aaccctgatt gccgttacca gcggtgcgaa tatgaatttt caccgtttgc
    28741 gccacgtttc ggaacggagc gaattgggcg agggcaacga aggtattttt gccgttacca
    28801 tccctgaaga acgcggcagc ttccttaagt ttgtcaatat attgggaaat aggaatatta
    28861 ccgagttcaa ctaccgctac ggggacgatg aaaaagcgca tatctttgtc ggacttcaag
    28921 cggcaggccc gcaggatttg gcggttatcg gcagccggtt ggatgaggcg ggattgccca
    28981 atgtcgacct gaccgatgat gagattgcca aaatccatat ccgctatatg gtcggagggc
    29041 ggacggacaa agtagaaaac gagcgtctgg tcagttttga gtttccggag cgtccggggg
    29101 cgttggcgcg ttttttgaac catatgcagg gcggttggaa cattacgctc ttccattacc
    29161 gcaaccacgg tgcggattac gggcggattt tggtcggtat cgatgtgccg ccgcacgatg
    29221 ccgccgcatt tgacggtttc ttggaaagtc tgggatacag ctatcacgag gaaacgcaaa
    29281 atgccgcgta caagctgttt cttgcctgac gcttgaaagc acaatgccgt ctgaaagcct
    29341 ttcagacggc attgcgcttt catggttaaa tcgaatattc aatcagttcg ttttgagaga
    29401 agacataaac ctgtttcgga atcagcttca attctttgcc ttcggcgatt gggtaacgcg
    29461 cggcatcgct gccagccagc gtgatatgca cgtcttgttt gccgtgtttc accaaaatat
    29521 gcgtcaatgc cccgacggcg tggacttttt cgatttcggc acaaatcatc ggtgtttcgt
    29581 gttcggcggc gatctgccat tcgtgcgggc ggatatagcc ggtggcggtt tgttcctgcc
    29641 atttgtattg tgcgtccaat ttccacgcga agccgttata atgccagaag cctttttcga
    29701 tgcgtccttc aaaagcgtcg gtttcgccga ggaactcggt aacgaaggca ttttcgggtt
    29761 tgcggtaaat agcttcggcg ctgccggttt gttcgatttt gccgtggttc atcacgacga
    29821 tttcgtcgga aacttcgagg gcttcttctt ggtcgtgcgt aaccagaatg ctggttacac
    29881 ccaggttgtg atggatgtcg cgcagccagg tgcgtaattc tttgcgtact ttggcatcca
    29941 acgcgccgaa gggttcgtcc aaaagcagga gtttcggttc gaccgcaagc gcacgggcga
    30001 gggcgatgcg ctggcgttgc ccgccggaga gttggtgcgg ataggatttt gccaaatgcg
    30061 agagctgcac gagcttgagc aattcttcga ctttggcgcg gatttgtcct ttggacgggc
    30121 gttcggactt gggcaatacg gtcaaaccga aggcaacgtt gtcaaacacg ttcatatggc
    30181 ggaaaagggc gtagtgttgg aacacgaagc cgactttgcg ctcgcgcacg tgcttggcgg
    30241 ttacgtcttg cccatcaaac agaatcttgc cgccgtcggc gttttccagt ccggcgataa
    30301 tgcgtaaaag cgtggttttg ccgcagccgg acgggccgag cagggaaacg agtttgccgg
    30361 tggggacgtt gaggttgatg tttttcagcg cgtgaaaatt gccgaagtgt ttgtttaagt
    30421 tttggatggt gatactcata ctgcgttcct ttcggcggcg gcgagttttt tgtcttgtaa
    30481 tttggtgatg atgttctgca ccgccagcgt cgccagtgcc aaaagtgcca atacgccgga
    30541 gagggcgaat gcgccggtga agttgtattc gttgtagaag atttcgacca aaagcgggac
    30601 ggtgttggtt tcgccgcgta tgtgtcccga taccacgctg accgcgccga actcgcccat
    30661 cgcgcgggcg ttggtgagga tgatgccgta gagtaacgcc catttgatgt tgggcagggt
    30721 aacgcgccaa aacatctgcc agccgcttgc gccgagtatc aatgccgcct gttcttcgct
    30781 gtcgccctga gcctgcatca gcgggatgat ttcgcgtgcg acaaagggga aagtaacgaa
    30841 cagcgtcgcc agaataatgc cggggatggc gaagataatc tgtatgcctt gcgcttcgag
    30901 ccagccaccc aatgccgtgt gcgcgccgaa caataagacg aacattaaac cggccaccac
    30961 gggcgatacg gaaaacggca aatcgagcag ggtggtcagc aactgcttgc cgcgaaaatc
    31021 aaaacgggtc agcagccacg ccatcgccac gcccaagacg gcattgacgg ggacgacaat
    31081 cagcgcggta atcagcgtca atttgatggc agaccacgct tcggaatcgc ttaaggattt
    31141 caggtacaaa tcccaaccgc cttttaaggc ttcgtaaaac acggcgacga gcggcacgac
    31201 cagcatcagc agcagaaagc ccagcgcggc ggcaatcagc aacacgcgca gccggcgcgg
    31261 ttcggtcagg ttgggattgg cggaataggg tttcatggcg gtggtgttcc ctggttggtt
    31321 gttttaaggt gttcggatgc cgtctgaaaa accgtttttt gtggggcgga ttcgttttca
    31381 gacaaccttt tattgattaa gggaataaaa acgtctagct gccgtcattc ccgcgcaggc
    31441 gggaatccac cacagggcaa caggaaaaca gaaaataaat aaggcagctg aaattcacca
    31501 atggattcct gcctgcgcgg gaatgacggt aacaggtatt tcagacgacc tcaacccttc
    31561 gcgcccgaac gcctgcccaa cgcccactgc atcacgttca gcgcaaacag aatcacaaac
    31621 gaaaccagca gcataaacaa cgccaccgcc gacgcgccct gcacgtcgaa ctgttccagc
    31681 ttgcccgtaa taatcagcgg caggatttca gaaaccatcg gaatattgcc cgcgataaaa
    31741 atcaccgagc cgtattcccc cgttgcccgc gcgaacatca ttcccgagcc ggtcaagagt
    31801 gccggcgtga tttccggcag cagcacgcgg cggaacgtcg taaagcggtt tgcgcccaaa
    31861 gtcgccgccg cttcctcata ttcgcccgat aattcctcca acaccggttg cacggcgcgg
    31921 acgataaagg gcaggctgac gacgaccagc gcaatccaaa tgccgacggg cgtaaacgcg
    31981 attttgatgc ccaaaggctc gaaaaaacgg cctatccaac cgttgggcgc atacagggtc
    32041 gccaacgcga tacccgtaac cgccgtcggc agcgcaaacg gcaaatcaac caaagcgttt
    32101 accaaccctt tgccgggaaa ttcatagcgc accaataccc acgccaccag cgtgccgaac
    32161 acgacattgg tcagcatcgc ataaaacgac atccgcaaac tcagccacac cgccgccaac
    32221 acgttcggct cggcaatcgt gttccaaaag ccgccccagc cgatttccgc cgccttcgcc
    32281 gccatcatcg caaacggcaa gaccacaagc agcgacaggc acaatacggt cagcccgagg
    32341 ctgagtttga agccgggcag tacgccgggc gttttgagcg gtaacataaa acaatgctga
    32401 aaataaggaa aaggaaggac tactttaacg atgccgtctg aaaaacggaa agaatggaaa
    32461 gtttggtaca aagacgaatt tgttataaag cggttggcag tttctcaagc gggcgcgatg
    32521 ttttaaaata tagtggatta aatttaaatc aggataaggc gacgaagccg cagacagtac
    32581 aaatagtacg gcaaggcgag gcaacgccgt actggtttaa atttaatcca ctataacgcc
    32641 ttgttttgac ggaaaaccat catataaagg aacacttatg cagattttat cttttcagcc
    32701 ggacattgcg gaacgtatgc tggaaggtac ggaaggcgag tcggtcaacg aaaacgcaca
    32761 attcgtccgt acggacaacg gctattggat tgcgtggcat gaaggcgtag cggcactgct
    32821 tgcgcccgat acgccgccgg gcattccctg tttttgggtg gaaggcgcgg aaagccttga
    32881 agagttgtgc gtcatggtgg aacgcggcga gtttgacgaa gtggaagagt ttgacggcga
    32941 tgacgacgaa tggctcgaaa cggcacaggg ttgcgggcac cacggcgaag cttgcgcctg
    33001 cggacattaa aggcattgca ggcttgccgc aagggggcaa ggctttgccg ttttttaaat
    33061 aatcggtgga ttgcatctgt ttgcaatggg ctgaacgctt ccctttgtat tttattgaat
    33121 aaaaaaactt atcttggtat tataattaag gcagcatcaa ttattttggg atggcaataa
    33181 acgcaaagca ttgatttgcg ccgattgcag acttattata gcaggttgcg gcgcggactt
    33241 aatgggaatt gtttatagag catgatggtc tgaaacatca ttaattaaaa ataccattaa
    33301 tccgatttat atttatttca atttcaatgg aaaaacatca atgacaatga ttttaagcat
    33361 tttaagcctg ttttttatca tcagactgtt atttttagcc gtctctatta aacatgaaaa
    33421 agccttgatt gccaaagggg cgaaacaata cggaaaaacc aattccacgc tgcttgcggc
    33481 agttcatacg ctttattatt tggcgtgttt tgtttgggta tggctttctg acactgcttt
    33541 taatggcata tccttgattg gtacgctgac ggtgatggct tcgtttgtga tattgtcatt
    33601 gattattaag cagttggggg agatttggac ggttaaaatc tatattttac caaatcatca
    33661 aattaatcgt tcgtggttgt ttaaaacatt ccgccacccc aattattttt taaacatcat
    33721 acccgaactg attggcatcg ccttattatg tcaagcgtgg tatgttttat tgattggcct
    33781 gcccatttat ttgctggtct tatttaagcg tatccgacaa gaagaacagg cgatggcaac
    33841 acttttttaa cccgtttcat caattatagc ggattaacaa aaaccagtac ggcgt
//
LOCUS       DAXHNP010000003        33550 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.003, whole genome shotgun sequence.
ACCESSION   DAXHNP010000003 DAXHNP010000000
VERSION     DAXHNP010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 33550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33550
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.003"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            80..1045
                     /locus_tag="ACFM5C_000094"
     CDS             80..1045
                     /locus_tag="ACFM5C_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6067881.1"
                     /translation="MLRLTALAVCTALALGACSPQNSDSAPQAKEQAVSAAQTEGASV
                     TVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPA
                     GTLFEPDYETLNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESSKERIDA
                     LAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGSSSRLGGWL
                     HKDIGVPAVDEAIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLDNP
                     LVAETTAWKKEQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK"
     gene            1063..1239
                     /locus_tag="ACFM5C_000095"
     CDS             1063..1239
                     /locus_tag="ACFM5C_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067882.1"
                     /translation="MPSETRMQTASCVSDGIARYGRYRGNGGKRFYWNLPYPLPDTEA
                     SNKAFRSDGSDCLV"
     gene            1274..2242
                     /locus_tag="ACFM5C_000096"
     CDS             1274..2242
                     /locus_tag="ACFM5C_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6067883.1"
                     /translation="MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQ
                     VMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMAGAGQSAALGLLLMSLLL
                     PAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
                     ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLG
                     LNRTAVLWSGLIIVALITSLVIVTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLG
                     ASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAHAV"
     gene            2232..3206
                     /locus_tag="ACFM5C_000097"
     CDS             2232..3206
                     /locus_tag="ACFM5C_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFC6067884.1"
                     /translation="MPSEKNIGFMAGSSRPLWVAFALLLVSCVLFLTLNVKGDWDFVL
                     HLRLTKLAALLMVAYAVGVSTQLFQTLTNNPILTPSILGFDSLYVFLQTLLVFTFGGV
                     GYTSLPAVGKFGFELVVMMGGSLLLFYTLVKQGGRDLSRMILIGVIFGILFRSLSSLL
                     SRMIDPEEFMAAQANMFAGFNTVHSELLGIGALILLVSAAVVWRERYRLDVHLLGRDQ
                     AVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLP
                     MTVCVGGILLVGGQTVFEHFLGMKAVLSVVVEFAGGLVFLYLVLKHKK"
     gene            3251..3877
                     /locus_tag="ACFM5C_000098"
     CDS             3251..3877
                     /locus_tag="ACFM5C_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdE family protein"
                     /protein_id="HFC6067885.1"
                     /translation="MTQERFPSFFNQAPTITVRDALAEFLGAAENGILTYRYADAVRL
                     CGHSCPTVAGAYLMVIKGLKALYGEELPERGGIEAAMQGARDEGTVGVTASVVQLLTG
                     AAPETGFGGIGMQGRFARRNLLSFGAGEINGTLTLRRKDNGKTVAVSLNAALQPFAPE
                     MRELMPKAVGGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV"
     gene            3961..4719
                     /locus_tag="ACFM5C_000099"
     CDS             3961..4719
                     /locus_tag="ACFM5C_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6067886.1"
                     /translation="MITIRNVSYRIGTRPILDNVSLDIPEGGITALVGPNGAGKSTLF
                     SFMARLRPLESGSIAYRGKNLACTPTAELAKTLSILTQENSIMSRITVRDLLMFGRYP
                     YHQGRPTAECRRIVNGAIEEFHLQDFADRYLTELSGGQRQRAMIAMVFCQRTDYVLLD
                     EPLNNLDMYHARSLMQILRRLTDEHKRTTVVVLHDINQAAAYADHVVAMKNGQVAMQG
                     KPDDIFTAANIKTLFDMDVSVLDHQSKKLIVHHI"
     gene            complement(4778..5116)
                     /locus_tag="ACFM5C_000100"
     CDS             complement(4778..5116)
                     /locus_tag="ACFM5C_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HFC6067887.1"
                     /translation="MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTE
                     IYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRI
                     RTGERADAAV"
     gene            5211..5423
                     /locus_tag="ACFM5C_000101"
     CDS             5211..5423
                     /locus_tag="ACFM5C_000101"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067888.1"
                     /translation="MPETVIPAQAGIPISAFQQYLKVSVNPNFHIPNRTETTAFDLKT
                     YGSSCPPLYFLQLSAYPALGKNQKNR"
     gene            5581..9567
                     /gene="purL"
                     /locus_tag="ACFM5C_000102"
     CDS             5581..9567
                     /gene="purL"
                     /locus_tag="ACFM5C_000102"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HFC6067889.1"
                     /translation="MSVVLPLRGVTALSDFRVEKLLQKAAALGLPEVKLSSEFWYFAG
                     SEKALDAATVEKLQALLAAQSVEQTPKAREGLHLFLVTPRLGTISPWASKATNIAENC
                     GLAGIERIERGMAVWLEGALTDRQKQQWAALLHDRMTESVLPDFQTASKLFHHLESET
                     FSTVDVLGGGKEALVKANTEMGLALSADEIDYLVENYQALQRNPSDVELMMFAQANSE
                     HCRHKIFNADFILNGEKQPKSLFGMIRDTHNAHPEGTVVAYKDNSSVIEGAKIERFYP
                     NAAENQGYRFHEEDTHIIMKVETHNHPTAIAPFAGAATGAGGEIRDEGATGKGSRPKA
                     GLTGFTVSNLNIPDLKQPWEQAYGKPDHIASPLDIMIEGPIGGAAFNNEFGRPNLLGY
                     FRTFEEKFDGQVRGYHKPIMIAGGLGSIQAQQTHKDEIPEGALLIQLGGPGMLIGLGG
                     GAASSMDTGTNDASLDFNSVQRGNPEIERRAQEVIDRCWQLGDKNPIISIHDVGAGGL
                     SNAFPELVNDAGRGAVFKLREVPLEEHGLTPLQIWCNESQERYVLSILEKDLDAFRAI
                     CERERCPFAVVGTATGDGHLKVRDDLFSNNPVDLPLNVLLGKPPKTTRTDKTVTPYAT
                     EGNPFGKKPFNAGDIDITEAAYRVLRLPAVAAKNFLITIGDRSVGGMTHRDQMVGKYQ
                     TPVADCAVTMMGFNTYRGEAMSMGEKPAVALFDAPASGRMCIGEAITNIAAVNIGDIG
                     NIKLSANWMAACGNEGEDEKLYRTVEAVSKACQALDLSIPVGKDSLSMKTVWQDGADK
                     KSVVSPLSLIISAFAPVEDVRKTVTPELKNVEDSVLLFIDLGFGKARMGGSAFGQVYN
                     NMSGDAPDLDDTSRLKAFYNVIQQLVAEDKLLAYHDRSDGGLFAVLVEMAFAGRCGLD
                     IDLNLLLAQTFITNHTALSQSLRTEEVKALAEWQETIARTLFNEELGAVIQVRKQDVA
                     DIINLFYQQQLHHNVFEIGTLTDENTLIIRDGQTHLISDNLIKLQQTWQETSHQIQRL
                     RDNPACADSEFALIGDNERSALFADVKFDVNEDIAAPFINSGAKPKIAILREQGVNGQ
                     IEMAAAFTRAGFDAYDVHMSDLMAGRFRLADFKMLAACGGFSYGDVLGAGEGWAKSIL
                     FHPALRDQFAAFFADPDTLTLGVCNGCQMVSNLAEIIPGAEAWPKFKRNLSEQFEARL
                     SMVHVPKSASLILNEMQGSSLPVVVSHGEGRADFALHGGNISADLGIALQYVDGQNQV
                     TQTYPLNPNGSPQGIAGITNADGRVTIMMPHPERVYRAAQMSWKPEGWTELSGWYRLF
                     AGARKALG"
     gene            9662..10420
                     /gene="gloB"
                     /locus_tag="ACFM5C_000103"
     CDS             9662..10420
                     /gene="gloB"
                     /locus_tag="ACFM5C_000103"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HFC6067890.1"
                     /translation="MKITPVKALTDNYIWMIQHGNHAVCVDPSEPSPVLEFLVRNRLM
                     LAQTWVTHPHPDHEGGAAALWRGYMESPVYGESDIEAATHTVTAGTQFTFGDGQVTVW
                     ATPGHTDRHTSYLLETSDGIHVFCGDTLFSAGCGRVFTGTIEQLYDSFQRFNRLPENT
                     LFYPAHEYTAANLRFAAHIEPDNADIQTALKAAAHTPTLPVTLAHERRVNPFLRVDLP
                     HVRDRAEALSGKTLNSSLDTFVALRELKNQYRTK"
     gene            10734..15209
                     /gene="mspA"
                     /locus_tag="ACFM5C_000104"
                     /gene_synonym="ausI"
     CDS             10734..15209
                     /gene="mspA"
                     /locus_tag="ACFM5C_000104"
                     /gene_synonym="ausI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin/serine protease MspA"
                     /protein_id="HFC6067891.1"
                     /translation="MRFTHTTPFCSVLSTLGLFAVSPAYSSIVRNDVDYQYFRDFAEN
                     KGAFAVGASNISIQDKQGKILGRVLNGIPMPDFRVSNRQTAIATLIHPQYVNSVKHNV
                     GYGSIQFGNDTQNPEEQAYTYRLVSRNPHPDYDYHLPRLNKLVTEISPAALSSVPLLG
                     NGQPKANAYLDTDRFPYFVRLGSGTQQVRKADGTRTRTAPAYQYLTGGTPLKVLGFQN
                     HGLLVGGSLTDQPLNTYAIAGDSGSPLFAFDKHENRWVLAGVLSTYAGFDNFFNKYIV
                     TQPEFIRSTIRQYETRLDVGLTTNELIWRDNGNGDSTLQGLNERITLPIANPSLAPQN
                     DSRHMPSEDAGKTLILSSRFDNKTLMLADNINQGAGALQFDSNFTVVGKNHTWQGAGV
                     IVADGKRVFWQVSNPKGDRLSKLGAGTLIANGQGINQGDISIGEGTVVLAQKAASDGS
                     KQAFNQVGITSGRGTAVLADSQQIKPENLYFGFRGGRLDLNGNNLAFTHIRHADGGAQ
                     IVNHNPDQAATLTLTGNPVLSPEHVEWVQWGNRPQGNAAVYEYINPHRNRRTDYFILK
                     PGGNPREFFPLNMENSTSWQFIGNNRQQAAKQVAQAENARPDLITFGGYLGENAQTGK
                     AAPSYSKTNIEWVNGPNTPHKPSPYTNTPTRTGAGVPTITASKKAATPAPTSHGMPTA
                     PKTGNFSDMTGEAAIEKTRHIANAAVYGRPEYRYNGALNLHYRPKRTDSTLLLNGGMN
                     LNGEVLIEGGNMIVSGRPVPHAYDHQAKREPVLENEWTDGSFKAARFTLRNHARLTAG
                     RNTAHLDGDITAYDLSGIDLGFIQGKTPECYRSYHSGSTHCTPNAVLKAENYRALPAT
                     QVRGDITLNDRSELRLGKAHLYGSIRAGKDTAVRMEADSNWTLSQSSHTGALTLDGAQ
                     ITLNPDFANNTHNNRFNTLTVNGTLDGFGTFRFLTGIVRKQNAPPLKLEGDSRGAFQI
                     HVKNTGQEPQTTESLALVSLNPKHSHQARFTLQNGYADLGAYRYILRKNNNGYSLYNP
                     LKEAELQIEATRAEHERNQQAYNQLQATDISRQVQHDSDATRQALQAWQNSQTELARI
                     DSQVQYLSAQLKQTDPLTGILTRAQNLCAAQGYSVDICRQVAKAADTNDLTLFETELD
                     TYIERVEMAESELDKARQGGDAQAVETARHAYLNALNRLSRQIHSLKTGVAGIRMPNL
                     AELISRSANTAVSEQAAYNTGRQQAGRRIDRHLTDPQQQNIWLETGTQQTDYHSGTHR
                     PYQQTTNYAHISIQTGITDRLSVGTILTDERTNNRFDEGVSARNRSNGAHLFVKGENG
                     ALFAAADLGYSNSRTRFTDYDGAAVRRHAWDAGINTGIKIDTGINLRPYAGIRINRSN
                     GNRYVLDGAEINSPAQIQTTWHAGIRLDKTVELGQAKLTPAFSSDYYDTRQNSGSALS
                     VNDRTLLQQAAHGTLHTLQIDAGYKGWNAKLHAAYGKDSNTARHKQAGIKIGYNW"
     gene            15441..16895
                     /gene="mgtE"
                     /locus_tag="ACFM5C_000105"
     CDS             15441..16895
                     /gene="mgtE"
                     /locus_tag="ACFM5C_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HFC6067892.1"
                     /translation="MSIEPTPPNLENDGIENDVERVSADFDRVHSLCEILEPAFEQIE
                     NGTPLEDAPLRDKLTELTVLLSELHPADVAAVLESLPPRERNIVWILVKPEDDGEVLL
                     EVSDAVRETLIESMDKDELLAAVDDLDADELAELADDLPHQVVYEALQTRDEEERAQV
                     KAAMSYEDNQVGAIMDFELVSIRADVACEVVLRYLRRFDSLPDHTDKIFVVDENDVLQ
                     GVLPIRKLLVADPEDLVENVMAKDVVRFRAEDDVEEAAQAFERYDLVTAPVVDENKKL
                     IGRITVDEMVDVIREESEADMLNMAGLQEEEDLFAPVLDSVKNRWMWLAVNLCTAFLA
                     SRVIGAFEGSIEKIVALAALMPIVAGIGGNSGNQTITMIVRAMAMGQLTGMQAGRLLK
                     KEVGVALVNGIIWGTVMGAVSWLLYGSLGIGLVMIAAMTLNLLLAATVGVLIPVVMEK
                     FGRDPALGSSVLITAVTDSGGFLIFLGLATLFLL"
     gene            complement(16981..17889)
                     /gene="hslO"
                     /locus_tag="ACFM5C_000106"
     CDS             complement(16981..17889)
                     /gene="hslO"
                     /locus_tag="ACFM5C_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HFC6067893.1"
                     /translation="MNQTAINRADVRTRFIFDDMPVRGLHVRLENVWQHIVKQKNYPA
                     AIRRALGELLAAGVLLSGNLKNEGTLIVQVQGQGRLKMLVAEATSDRTVRATARWDEA
                     AEIADDESLGDLLGGNGVFVLTLQPKDGEPWQGVVPLEGDGIAQMLMNYMKRSEQLDT
                     HIVLSASDEAAGGLLVQRLPEEVLDEEAWEHVSTLARTLTAEELAELDAQHVLYRLFH
                     ETPPRVFEPETFEFSCTCSRGKVSDMLLMLGGEEVGGVVAEQGSIEVDCDFCHSKYVF
                     DETDVNALFGEDVVGVAKGLPRHTVQ"
     gene            18134..18889
                     /locus_tag="ACFM5C_000107"
     CDS             18134..18889
                     /locus_tag="ACFM5C_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6067894.1"
                     /translation="MDSFFKPAVWAVLWLMFAVRPALADELTNLLSSREQILRQFAED
                     EQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELIGNAMGLN
                     EQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAM
                     GINLPRTSAEQARMGTPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTG
                     KNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN"
     gene            18908..19126
                     /locus_tag="ACFM5C_000108"
     CDS             18908..19126
                     /locus_tag="ACFM5C_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067895.1"
                     /translation="MSMPEIPKWYDDDGQIVSCTEKIKVMSENMAELYQTAQDAFEDA
                     LLMGCGERQLRDYLLALIEGLENPYRKV"
     gene            19271..19615
                     /locus_tag="ACFM5C_000109"
     CDS             19271..19615
                     /locus_tag="ACFM5C_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HFC6067896.1"
                     /translation="MNIIRALLIILGCLAAGETAVFLAGIKLPGSIVGMGVLFALLQA
                     GWVKTSWLQQLTDALMANLTLFLVPPCVAVISYLDLIADDWFSILVSASASTLCVLLV
                     TGKVHRWIRSII"
     gene            19615..20307
                     /locus_tag="ACFM5C_000110"
     CDS             19615..20307
                     /locus_tag="ACFM5C_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HFC6067897.1"
                     /translation="MNEILRQPSVLLFLTLAVYALAIIVRTRTGNIFCNPVLVSTIVL
                     IAYLKILDIDYAVYHNAAQFIDFWLKPAVVVLAVPLYQNRRKIFNQWLPVIVSQLAGS
                     VTGIVTGMYFAKWLGAEREVVLSLASKSVTNPIAIEITRSIGGIPAITAATVIIAGLV
                     GQIAGYKMLKNTVVMPSSVGMSLGTASHAMGIAASLERSRRMAAYAGLGLTFNGVLTA
                     LIAPLLIPVLGF"
     gene            20374..21594
                     /gene="argJ"
                     /locus_tag="ACFM5C_000111"
     CDS             20374..21594
                     /gene="argJ"
                     /locus_tag="ACFM5C_000111"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HFC6067898.1"
                     /translation="MAVNLTEKTAEQLPDIDGIALYTAQAGVKKPGHTDLTLIAVAAG
                     STVGAVFTTNRFCAAPVHIAKSHLFDEDGVRALIINTGNANAGTGAQGRIDALAVCAA
                     AARQIGCKPNQVLPFSTGVILEPLPADKIIAALPKMQPAFWNEAARAIMTTDTVPKAA
                     SREGKVGDKHTVRATGIAKGSGMIHPNMATMLSFIATDAKVSQPVLQLMTQEIADETF
                     NTITVDGDTSTNDSFVIIATGKNSQSEIDNIADPRYAQLKELLCSLALELAQAIVRDG
                     EGATKFITVRVENAKTRDEARQAAYAVARSPLVKTAFFASDPNLGRLLAAIGYAGVAD
                     LDTDLVEMYLDDILVAEHGGRAASYTEAQGQAVMSKAEITVRIKLHRGQAAATVYTCD
                     LSHGYVSINADYRS"
     gene            21654..23063
                     /locus_tag="ACFM5C_000112"
     CDS             21654..23063
                     /locus_tag="ACFM5C_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6067899.1"
                     /translation="MTSTFPRRLARKIRQTRRLSRKSIAFLFLLAGSALVALTALFFA
                     HLADFALELNAKLVQQYPWFAWVALPLGLPLIAWLTRKFAPFTAGSGIPQVIASLSLP
                     YGAQKTRLIRLGQTLLKIPLTFLGMLFGASIGREGPSVQVGAAVMGAWGAWCKKHGLA
                     FKGMQENDLMAAGAAGGLAAAFNAPLAGVIFAIEELGRGIMLRWERQILLGVLASGFI
                     QVAIQGNNPYFSGFNGGVLEHIFLWVALSGLVCGAAGGLFGRLLYRGAAAFAPRKIRG
                     FIRNRPLLLAALMGLLLALLGTFYQGKTYGTGYHEAAQALHGIYEAPFGLAAAKWLAT
                     VFSYWAGVPGGIFTPSLTIGAVLGEHIAAIADISQGANIIVLICMAAFLAGATQSPIT
                     SAVVVMEMTGGQSLLFWMLIACIFASQVSRQFSPRPFYHASGMRFRQRVLQETTAQTG
                     NAPARPQTANSKTGMPSEN"
     gene            23253..24644
                     /gene="hrpA"
                     /locus_tag="ACFM5C_000113"
     CDS             23253..24644
                     /gene="hrpA"
                     /locus_tag="ACFM5C_000113"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HFC6067900.1"
                     /translation="MFPDFSQTLSKDRHFLRSAFKNPNKYGGLSKVEEKYRKSHEIFL
                     KRLAALPKPEFDNTLPVHEKLDEIKKTVAEHQVTIICGETGSGKTTQLPKICLELGRG
                     AAGLIGHTQPRRLAARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGIL
                     LAETQTDRYLAAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAER
                     FSQHFNGAPVLEVSGRTYPVEILYRPLIGKDEDDAEIELTDAIVDAADELARYGEGDI
                     LVFLPGEREIREAAEALRKSTLRRNDEILPLFARLSHAEQHKIFHPSGAKRRIVLATN
                     VAETSLTVPGIKYVIDTGLARVKRYSARAKVEQLHIEKISQAAARQRSGRCGRVSAGV
                     CIRLFSEENFNNRPEFTDPEIARSNLAAVILRMASLKLGDVAAFPFLEMPDSRYINDG
                     FQVLLELGAVEAA"
     gene            24745..25872
                     /locus_tag="ACFM5C_000114"
     CDS             24745..25872
                     /locus_tag="ACFM5C_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HFC6067901.1"
                     /translation="MKHLLIDFENVQPQNLDKLLTENTHIWLFIGVLHKMLPISLVQS
                     LLRFGERVHLVQLQKTGKNALDFYLSYYLGQITATDPNAQIGILSRDGGYDVLVEHIL
                     KNHQAKGIVRLANIDEVQHQKITTEPPSALLENTPQPETTLKPQQPLTSYFQAALTAL
                     RRPDAFRPCRLHNLRQNLRKHILSDLFKEKTDEECEITTANVINKLKAQNFISIDEQE
                     TVSYHLSDNDLLQRIQRHILSQRPKTYADFQAVVQNRADALHLTVGTNDIQSFARHLR
                     DQNLIRQNNGKIEYAPFTEPKPQPTPKQPKKTAWEPDEIIWKKVIAALSLKNRPNKTK
                     TLRNTIQALTKSNAQETDKLLQHLQDTQVLRIDGTKIVYIK"
     gene            26049..27626
                     /gene="lpt3"
                     /locus_tag="ACFM5C_000115"
     CDS             26049..27626
                     /gene="lpt3"
                     /locus_tag="ACFM5C_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HFC6067902.1"
                     /translation="MMKKSLFVLFLYSSLLTASEIAYRFVFGIETLPAAKMAETFALT
                     FVIAALYLFARYKTSRLLIALFFAFSIIANNVHYAVYQSWMTGINYWLMLKEVTEVGS
                     AGASMLDKLWLPALWGVAEVVLFCSLAKFRHKTHFSADILFAFLMLMIFVRSFDTKQE
                     HGISPKPTYSRIKANYFSFGYFVGRVLPYQLFDLSKIPVFKQPAPSRIGQGSIQNIVL
                     IMGESESAAHLKLFGYGRETSPFLTRLSQADFKPIVKQSYSAGFMTAVSLPSFFNVIP
                     HANGLEQISGGDTNMFRLAKEQGYETYFYSAQAENQMAILNLIGKKWIDHLIQPTQLG
                     YGNGDNMPDEKLLPLFDKINLQQGRHFIVLHQRGSHAPYGALLQPQDKVFGEADIVDK
                     YDNTIHKTDQMIQTVFEQLQKQPDGNWLFAYTSDHGQYVRQDIYNQGTVQPDSYLVPL
                     VLYSPDKAVQQAANQAFAPCEIAFHQQLSTFLIHTLGYDMPVSGCREGSVTGNLITGD
                     AGSLNIRDGKAEYVYPQ"
     gene            27728..30934
                     /locus_tag="ACFM5C_000116"
     CDS             27728..30934
                     /locus_tag="ACFM5C_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HFC6067903.1"
                     /translation="MDARSNPANVSDGLQNSSSHIGTNTRYRLTKLGEQMARLPIDPK
                     IARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAASKAHERFTDKQSDFLAYL
                     NIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQTAIEMGLTTKEAA
                     FRRSPEVRQLTSSENAGDQDLSAKLKQKQLDKKQHRAQIRAAKEAGYEQIHRALLTGL
                     IANVGMKSPDGNDYTSTRGSRFHLFPASALFKAKPKWVMAAELVETTKLYARDVAAIQ
                     PEWIEQEAPHLVRYHYFEPHWEQKRGEVIASERVTLYGLTVLPRRPVSYGRIAPEEAR
                     EIFIRGALVAQECDLKADFFVHNKKLIKEITELEHKSRKQDVLVDDEALFAFYNERLP
                     EMAWKDAQGSVWGSEDSVRIIESDKAERSSENERNEFRKNKRNGSRQNENHGNTVGWV
                     ENPTSAATAKTVGFDNPTYATQQPTPSPEREGRGEGKTVAAQTNFSATAANPLPQERE
                     QSASASTFSDDLRPANLQQTAPSPVGEGWGESKTVATQTNFSATSTLSDDPKPKKQPA
                     PQKGRLKPLPLADIRTFQAWLKTAECDNPRLLFLSRDDLMQHAAAHITEEQFPKFWQT
                     ADGKFKLSYRFEPHHPLDGVTMTVPLTVLNRLHAPSLEWLVPGMLREKIQLLIKALPK
                     QIRRICVPVPDFITKFLESNPDRQATIIPQLAHFIAKSASDMRILEQIDQDAWAAQEL
                     PEHCYLNLRIIDDGGQELAGGRKLHELQQQLGQAAAVTFRDNTQEFERDNVTTWDIGT
                     LPESIKFARGKQQLTGYLGLQKEKDGRIALRLFDTTEAAEQAHRQGVIELMKLQLKEQ
                     VKDLNKGIQGFTQAAMLLKHINADTLRDDLTQAVCDRAFIGEDELPRNEKAFKEQIKR
                     ARSRLPAVKEALSRYLQETAAAYAELNGKLGKHPLTHLLRLRLQTLLAPGFATRTPWA
                     QWPRLPIYLKAMTLRLEKYSSNPARDAAREADIQELEQMWQEKNDGLVKQGQPISDNL
                     AAFKWMIEELRVSLFAQELKTPYPVSVKRLLKEWEKIF"
     gene            31001..31831
                     /locus_tag="ACFM5C_000117"
     CDS             31001..31831
                     /locus_tag="ACFM5C_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6067904.1"
                     /translation="MSLENFQLIKTQLGVPSYENDRVAIYQGDCIQLMDKISKGSFQM
                     TITSPPYNIGKEYESILDLEHYLEWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLA
                     VPIPYLLWDKTNFFLLQEVVWNYAAGVACRNRFSPRNEKLLWYVKNPAKYTFNLDAVR
                     DPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAKVTSGRNRSSRERTAHPAQFPLELIER
                     IIRASSNQNDVILDPFIGSGTTALAGLKNNRFVIGFEINDEYIDIIKERFKEYDLQNT
                     "
     gene            complement(31888..32487)
                     /locus_tag="ACFM5C_000118"
     CDS             complement(31888..32487)
                     /locus_tag="ACFM5C_000118"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ScaI family restriction endonuclease"
                     /protein_id="HFC6067905.1"
                     /translation="MNRSKISPYASLNEELWISKTEELIKQHPLSEKEIVQLCLDSWE
                     NIFSSRIGNLQIGKNFFPSPQIVGALLHALIPANIEARFENWQGEKNKYDKDIVYIKD
                     DYYSIELKTSSDPKYIFGNRSYAQPQDGITGKSKNGYYLTINFEKFMPDLKLRPEIKI
                     IRFGWLDHTDWIAQTAATGQQARLSPEAYRSKLKILYQK"
     gene            complement(32489..32704)
                     /locus_tag="ACFM5C_000119"
     CDS             complement(32489..32704)
                     /locus_tag="ACFM5C_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6067906.1"
                     /translation="MENELVEFGKRVKHYRLLNGWSQEELAEKVGLHRTYIGSVERGE
                     RNISLLNISLLAKSFSINISELVEGIK"
     gene            complement(33136..33550)
                     /locus_tag="ACFM5C_000120"
                     /pseudo
     CDS             complement(33136..33550)
                     /locus_tag="ACFM5C_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         8370 a        10013 c         8132 g         7035 t
ORIGIN      
        1 tatcatttat cctttctaaa gccgttccgg tttgtccgac cggcggcttt gccccaatat
       61 ccccattttg gagacaccta tgttacgttt gactgcttta gccgtatgca ccgccctcgc
      121 tttgggcgcg tgttcgccgc aaaattccga ctctgcccca caagccaaag aacaggcggt
      181 ttccgccgca caaaccgaag gcgcgtccgt taccgtcaaa accgcgcgcg gcgacgttca
      241 aataccgcaa aaccccgaac gcatcgccgt ttacgatttg ggtatgctcg acaccttgag
      301 caaactgggc gtgaaaaccg gtttgtccgt cgataaaaac cgcctgccgt atttagagga
      361 atatttcaaa acgacaaaac ctgccggcac gctgttcgag ccggattacg aaacgctcaa
      421 tgcctacaag ccgcagctca tcatcatcgg cagccgcgca gccaaagcgt ttgacaaatt
      481 gaacgaaatc gcgccgacca tcgaaatgac cgccgatacc gccaacctca aagaaagctc
      541 aaaagagcgt atcgacgcgc tggcgcaaat cttcggcaaa caggcggaag ccgacaagct
      601 gaaggcggaa atcgacgcgt cttttgaagc cgcgaaaact gccgcgcaag gcaaaggcaa
      661 aggtttggtg attttggtca atggcggcaa gatgtccgcc ttcggctcgt cttcacgact
      721 gggcggctgg ctgcacaaag acatcggcgt tcccgctgtt gacgaagcca tcaaagaagg
      781 cagccacggt cagcctatca gctttgaata cctgaaagag aaaaatcccg actggctgtt
      841 cgtccttgac cgcagcgcgg ccatcggcga agagggtcag gcggcgaaag acgtgttgga
      901 taatccgctg gttgccgaaa caaccgcttg gaaaaaagaa caggtggttt acctcgttcc
      961 cgaaacttat ttggcagccg gtggcgcgca agagctgctg aatgcaagca aacaggttgc
     1021 ggatgcgttc aacgcggcaa aataatgaaa cggcggcatt cgatgccgtc tgaaacacgg
     1081 atgcaaaccg cttcctgtgt ttcagacggc attgcccgat acgggcgtta tcgcgggaat
     1141 ggcggcaagc gtttttattg gaacttgccc tatcctctgc ccgatacgga ggcttcaaac
     1201 aaggctttcc gctccgacgg ttcggactgc cttgtttgaa tcttctacgc cttaacgctt
     1261 ttcctttctg tttatgactg ccaaaccttt ttccctcaac ctgaccaacc tcctgctgct
     1321 ggcggtattg tttgccgtca gcctgtcggt cggcgttgcc gatttccgct ggtcggatgt
     1381 gttttcgctg tccgacagcc agcaggttat gttcatcagc cgcctgccgc gcacgtttgc
     1441 gattgtgctg acgggcgcgt cgatggcggt ggcggggatg attatgcaga ttctgatgcg
     1501 taaccgtttt gtcgagcctt ctatggcggg cgcgggtcag agtgcggctt tgggtttgct
     1561 tctgatgtcc ctgctgctgc ctgccgcgcc gctgccggtc aaaatgtcgg ttgccgccgt
     1621 tgccgcgtta atcgggatgt tggtgtttat gatgcttatc cgccgcctgc cgccgacggc
     1681 gcaactgatg gtgcctttgg tcgggattat tttcggcggc gtggttgagg cggtggccac
     1741 ctttattgcg tatgaaaacg aaatgctgca aatgctgggc gtgtggcaac agggcgattt
     1801 ttcgagcgtg ctgctggggc ggtacgagct gctttggatt acgggcggtt tggcggtgtt
     1861 tgcctatctg attgccgacc ggctgacgat tttggggctg ggcgaaacgg tcagcgtgaa
     1921 tttgggtttg aaccggacgg cggtgttgtg gtcggggctg attattgtgg ctttgattac
     1981 gtcgctggtt atcgttacgg tcggcaatat tccgtttgtc gggctggtcg tgccgaacat
     2041 catcagccgc ctgataggcg acaggctgcg ccaaagcctg cctgcggtgg ccttgttggg
     2101 cgcgtctttg gttttattgt gcgacattat cggacgcgtg attgtgtttc cgtttgaaat
     2161 tccggtatcg accgtcttcg gcgtattggg tacggcgttg tttttatggc ttttgttaag
     2221 gaaacctgct catgccgtct gaaaaaaata tcggttttat ggcaggaagc agccgtccgt
     2281 tgtgggttgc ctttgcgctg ttgctggttt cctgcgtcct gtttttaacg ctcaacgtca
     2341 aaggcgattg ggactttgta ctgcacctgc gtctgaccaa acttgccgcg ctgctgatgg
     2401 tcgcctatgc ggtcggcgtg tccacgcaac tcttccaaac gctgaccaac aatccgattc
     2461 tgaccccttc gattttgggt ttcgattcgc tgtatgtgtt tttgcagacc ttgctggtgt
     2521 ttacgttcgg cggcgtgggc tatacgtccc tgcctgcggt cggcaagttc ggctttgaat
     2581 tggtcgttat gatgggcggc tcgctgctgt tgttctacac gctcgtcaaa caaggcgggc
     2641 gcgatttgtc gcgcatgatt ttaatcggcg tgattttcgg gattttgttc cgcagcctgt
     2701 cgtcgctgct ttcgcgcatg atcgaccccg aagaatttat ggcggcgcag gcgaatatgt
     2761 ttgccggatt caataccgtc cacagcgagc ttttgggcat aggcgcgctg attctgctcg
     2821 tcagcgcggc ggtcgtttgg cgcgaacgct accgcttgga cgtacacctt ttggggcgcg
     2881 accaagccgt caatttgggc atcagctaca cgcgcaacac cttatggata ctgctttgga
     2941 ttgccgcatt ggtggcgacg gcgaccgccg ttgtcggccc ggtaagcttt ttcgggcttc
     3001 tcgccgcctc gcttgccaac cacttttccc cgtccgtgcg ccattccgtc cgcctgccga
     3061 tgacggtttg tgtcggcggc atcctcctgg tcggcggaca aaccgtattc gaacacttct
     3121 tgggcatgaa ggcggtatta agcgtggtgg tcgaatttgc gggcggactc gttttcctct
     3181 atctcgtttt aaaacacaaa aaatgacgga tgccgtctga acggcagcct ggctcgaaag
     3241 gacaaaccat atgacgcaag aacgtttccc atcattcttc aaccaagccc cgaccatcac
     3301 cgtcagggac gcgcttgctg aattcctcgg cgcggccgaa aatggcatcc tcacttaccg
     3361 ctacgccgat gccgtgcgcc tgtgcggcca ctcctgcccg accgtcgccg gcgcgtacct
     3421 gatggttatc aaaggtctga aagcccttta cggcgaagag ctgcccgaac gcggcggcat
     3481 cgaagccgcc atgcagggag cgcgcgacga aggcacggtc ggcgtaaccg cgtccgtcgt
     3541 ccaactcctc accggcgcag ccccggaaac cggcttcgga ggcatcggaa tgcagggacg
     3601 cttcgcccgc cgtaacctct tatcctttgg tgcaggcgaa atcaacggca cactgaccct
     3661 gcgccgcaaa gacaacggca aaaccgtcgc cgtcagcctc aacgccgccc tacaaccctt
     3721 tgcacccgaa atgcgcgaac ttatgcccaa agccgtcggc ggcagcgcaa gcgcagaaga
     3781 actcgaacgc ttcggacaac tctggcaggc acgcgttaaa gcatttttga ccgaatcggc
     3841 ggacgacccg cagttcgtca tcgtccgcga agtgtgagcg ttcagacggc attccgaatt
     3901 tcaaatgccg tctgaacccc cgccaaacaa caacaaacct acgcccgaca agcatccgcc
     3961 atgattacca tccgcaacgt cagctaccgc atcggcacac gccccatcct cgacaacgtc
     4021 agcctcgaca tccccgaagg cggcattacc gccctcgtcg gccccaacgg tgcgggcaaa
     4081 tccaccctgt tttcctttat ggcgcggctg cgcccgcttg aaagcggcag catcgcctac
     4141 cgcggcaaaa accttgcctg cacccccacc gccgaactcg ccaaaaccct gtccatcctc
     4201 acccaagaaa acagcatcat gagccgcatc accgtgcgcg acctgctcat gttcggccgc
     4261 tatccctacc atcaaggcag accgactgcc gaatgccgcc gtatcgttaa cggtgcaatc
     4321 gaagaattcc acctgcaaga cttcgccgac cgctacctga ccgagctttc cggcggacaa
     4381 cgccaacgcg ccatgattgc catggtgttc tgccagcgca ccgactacgt tttgctggac
     4441 gaaccgctga acaacctcga catgtatcat gcccgctccc tcatgcaaat cctgcgccgg
     4501 ctgaccgacg aacacaagcg caccaccgtc gtcgtattac acgacatcaa ccaggccgcc
     4561 gcctacgccg accacgtcgt cgccatgaaa aacggccaag tcgccatgca gggcaagccc
     4621 gacgacattt tcaccgccgc aaacatcaaa accctgttcg atatggatgt gtccgtcctc
     4681 gaccaccaaa gcaaaaaact catcgtccac catatctgaa gctcaaaaag aaaatgccgt
     4741 ctgaaaacct ttcagacggc atttccattc caaacgctca aaccgccgcg tccgcacgtt
     4801 cgcccgtgcg gatacggatt gcctcctcga ccggcagcac aaaaatcttg ccgtcgccga
     4861 tttttcccga acgcgccacc tcgacaatca cgtcaatcgc gcgttccaca gcatcatccg
     4921 ccaacaccag ctcgattttg actttgggca ggaaatcgac ggcgtattcc gcaccgcgat
     4981 agatttccgt atgccccttc tgcctgccga accctttgac ctcgctgacg gtcatgcccg
     5041 taatgccgat ttccgtcaac gcctcgcgca cgtcgtcgag tttgaacggt ttgacaatcg
     5101 cctcgatttt tttcatcaca ttctccatta attaacgtaa acaaacgaca aatatagcag
     5161 aaaccgccgg caaacgataa acggtactgt tcgcccggcg atgcggcgat ttgccggaaa
     5221 ccgtcattcc cgcgcaggcg ggaatcccga tctctgcatt tcagcaatat ttaaaggttt
     5281 ctgtaaatcc aaacttccat attcctaacc gtacggaaac gacggcattt gatctaaaaa
     5341 catacggaag cagttgcccg cccctctact tcctgcaatt atccgcatac ccggctttgg
     5401 gtaaaaatca gaaaaacaga taaaaccctt attccttaat atcttcagac ggcacctgta
     5461 ttttccccaa ctgtatgccg tctgaagatt gtcaacattt taagccaaaa tatccaagca
     5521 atacaaacct gtccggcgta taatccctct ttttcccaac cgcatttgag agccgaatcc
     5581 atgtctgtcg ttttgccctt gcgcggcgtt accgcccttt ccgatttccg tgtcgaaaaa
     5641 ctcttgcaaa aagccgccgc actcggactg cccgaagtca aattaagcag cgaattttgg
     5701 tatttcgccg gcagcgagaa agcacttgat gccgcgactg tcgaaaaact gcaagccttg
     5761 ttggcggcgc aaagcgttga acaaacgcca aaagcgcgcg agggcttgca tttgtttttg
     5821 gtcacgcccc gtttgggtac gatttcgccg tgggcttcca aggcgaccaa tatcgcggaa
     5881 aactgcggtt tggcaggcat agagcgcatc gagcgcggta tggcggtgtg gctggaaggc
     5941 gcgcttaccg acaggcaaaa acaacaatgg gcggctttgc tgcacgaccg catgaccgaa
     6001 tccgtattgc ccgattttca gacggcatcc aaattattcc accatctcga atccgaaacc
     6061 ttctccaccg tcgatgtttt gggcggcggt aaagaggctt tggtcaaagc caataccgaa
     6121 atgggtttgg cactctccgc cgacgaaatc gattatctgg ttgaaaacta tcaggctttg
     6181 cagcgcaatc cgtccgatgt ggagctgatg atgttcgcgc aggcaaacag cgaacactgc
     6241 cgccacaaaa tcttcaacgc cgatttcatc ctcaacggcg aaaaacaacc gaaatccctg
     6301 ttcggcatga tacgcgacac gcacaacgcg catcccgaag gtacggtcgt cgcctataaa
     6361 gacaattcgt ccgtgatcga aggcgcgaaa atcgagcgtt tctatccgaa tgcggcggaa
     6421 aaccaaggct accgtttcca cgaagaagac acgcatatca tcatgaaagt ggaaacgcac
     6481 aaccacccga ccgccatcgc gccgtttgcg ggcgcggcga cgggtgcggg cggcgaaatc
     6541 cgcgacgaag gcgcgacggg caaaggttcg cgcccgaaag caggcttgac cggctttacc
     6601 gtctccaacc tcaacatccc cgacctcaaa cagccttggg aacaagccta cggcaaaccc
     6661 gaccatattg cttccccttt agacatcatg atcgaaggcc ccatcggtgg cgcggcgttc
     6721 aacaacgaat tcggacgccc caacctcttg ggctacttcc gcacctttga agaaaaattt
     6781 gacggtcagg ttcgcggcta ccacaaaccg attatgattg cgggcggctt gggcagcatt
     6841 caggcgcagc agacgcataa agacgaaatc cccgaaggcg cgttgctgat ccaactgggc
     6901 ggcccgggta tgcttatcgg cttgggcggc ggcgcggctt cttcgatgga taccggtaca
     6961 aacgacgctt ctttagactt caactccgtg caacgcggca accccgaaat cgaacgccgc
     7021 gcgcaggaag tcatcgaccg ctgctggcag ctcggcgaca aaaacccgat tatctccatc
     7081 cacgacgtgg gcgcaggagg tttgtccaac gccttccccg aactcgtcaa cgatgccgga
     7141 cgcggcgcgg tattcaagtt gcgcgaagtg ccgttggaag aacacggttt aacgcctttg
     7201 caaatctggt gcaacgaatc gcaagagcgt tatgtgttgt cgattttgga aaaagatttg
     7261 gatgccttcc gcgccatctg cgaacgcgaa cgctgcccgt ttgccgtagt cggcacggcg
     7321 accggcgacg gccatttgaa agtacgcgac gatttgttct ccaacaaccc tgtcgatttg
     7381 ccgttgaacg ttttgctcgg caaaccgccc aaaaccacgc gcaccgacaa aacggttacg
     7441 ccgtatgcga ccgaagggaa tccctttggg aaaaaaccgt ttaatgccgg cgatatcgac
     7501 attaccgaag ccgcctaccg cgttctgcgc ctgcctgccg tagcggctaa aaacttcctg
     7561 attaccatcg gcgaccgcag cgtcggcggc atgacccacc gcgaccaaat ggtcggcaaa
     7621 taccaaaccc ccgtagccga ctgcgccgtg accatgatgg gcttcaacac ctatcgcggc
     7681 gaagcgatgt ctatgggcga aaaaccggcc gtcgccctgt ttgacgcgcc tgcttcgggc
     7741 agaatgtgta tcggcgaagc catcaccaac atcgcagcgg tcaacatcgg cgacatcggc
     7801 aatatcaaac tttctgccaa ctggatggcg gcgtgcggca acgaaggcga agacgaaaaa
     7861 ctctaccgca ccgtcgaagc ggtttccaaa gcctgtcagg cattggattt gagcatcccc
     7921 gtgggcaaag acagcctgtc gatgaaaacc gtttggcagg atggcgcgga caagaaatcc
     7981 gtcgtctcgc cattgagcct gattatctcc gcgttcgcgc cggtggaaga cgtacgcaaa
     8041 accgttacgc ccgaactgaa aaacgtcgaa gacagcgtat tgctgtttat cgatttgggc
     8101 ttcggcaaag cgcgtatggg cggctcggcg tttggtcagg tgtacaacaa tatgagcggc
     8161 gacgcgcccg atttggacga tacaagtcgt ctgaaagcgt tttacaacgt gattcagcag
     8221 cttgtcgccg aagacaaact cttggcgtat cacgaccgca gcgacggcgg tttgtttgcc
     8281 gttttggtag aaatggcgtt tgcggggcgg tgcggcttgg atatagattt aaatttattg
     8341 cttgcacaaa catttattac caaccatacc gctctgtctc aatcattgcg gactgaagag
     8401 gtaaaagcgt tggctgaatg gcaagaaacc attgcccgca cattatttaa tgaagagttg
     8461 ggtgctgtta tccaagttag aaaacaagat gttgccgata ttatcaattt attctatcaa
     8521 caacagctgc atcataatgt ctttgaaatc ggtacgttaa ctgatgagaa cacgttaatc
     8581 atccgcgacg ggcaaacgca ccttatttct gacaacctaa tcaaactgca acaaacctgg
     8641 caagaaacca gccatcaaat ccaacgcctg cgcgacaacc ctgcctgcgc cgacagcgag
     8701 tttgccctga ttggcgacaa cgaacgcagc gcattgtttg ccgacgtgaa gttcgacgtg
     8761 aacgaagaca tcgccgcgcc gtttatcaac agcggcgcga aacccaaaat cgccatcctg
     8821 cgcgaacagg gcgtaaacgg gcaaatcgaa atggccgccg cgttcactcg cgccggtttc
     8881 gatgcctacg acgtgcatat gtccgacctg atggcaggcc gcttccgcct tgccgacttc
     8941 aaaatgctgg cggcgtgcgg cggcttcagc tacggcgacg tactcggcgc gggcgaaggc
     9001 tgggcgaaat ccatcctgtt ccaccctgcc ttgcgcgacc aatttgccgc cttctttgcc
     9061 gatccggaca cgctgacatt gggcgtgtgc aacggctgcc agatggtcag caacctcgcc
     9121 gagattatcc cgggtgcaga ggcatggcct aaattcaaac gcaacctgag cgaacagttt
     9181 gaagcacgcc tgagcatggt tcacgttccg aaatcagcgt cgctgattct gaacgaaatg
     9241 caaggctcca gcctgcctgt cgtggtcagc cacggcgaag gccgcgccga cttcgcgctt
     9301 cacggcggca atatttccgc cgatttgggc atcgcgctgc aatatgtgga cggtcaaaac
     9361 caggttaccc aaacctatcc gctcaacccc aacggctcgc cgcaaggcat cgccggcatt
     9421 accaacgccg acggccgcgt gaccatcatg atgccccacc ccgaacgcgt gtaccgcgcc
     9481 gcgcaaatga gctggaaacc ggaaggctgg acggaactgt ccggctggta ccgcctcttt
     9541 gccggcgcac gtaaagcctt gggctaaccg ccctactcaa accaatgccg tctgaagaat
     9601 atttcagacg gcgttccggc ataccatcct ttaaacggta tccgtccacc gaggaacact
     9661 catgaaaatc acccccgtca aagccctaac cgacaactac atctggatga tacagcacgg
     9721 caaccatgcc gtctgcgtcg acccttccga accctcgccc gtcttagaat tcctcgtccg
     9781 caaccgcctc atgcttgccc aaacatgggt aactcacccc caccccgacc acgagggcgg
     9841 tgcggcggca ctctggcgcg gctacatgga atcgcccgtt tacggcgaat ccgacatcga
     9901 agcagcaacc cacaccgtaa ccgccggcac ccaattcacc ttcggcgacg gacaggttac
     9961 cgtttgggca acacccggcc acacagaccg ccacaccagc taccttctcg aaacttcaga
    10021 cggcatacac gtcttttgcg gcgacaccct tttttccgcc ggctgcggac gcgtgtttac
    10081 cggcacaatc gaacagcttt acgacagctt ccaacgcttc aaccgcctgc ctgaaaacac
    10141 cctgttctac ccggcacacg aatacaccgc cgccaacctg cgtttcgccg cccatatcga
    10201 gccggacaac gccgacattc agacggcact gaaagcggcg gcgcatacgc ctaccctgcc
    10261 cgttaccctc gcgcacgaac gccgcgtcaa tccgtttttg cgcgtcgacc tgccgcacgt
    10321 cagagaccgc gccgaggcat tgagcgggaa aacgttaaac agcagcctcg atacctttgt
    10381 cgcgctgcgt gaacttaaaa accaataccg gacgaaataa aacaatggga aaacgcagcc
    10441 attcctagga tttttattaa aatcttaaat aaaatcatac aatcatcgcc aatagacgaa
    10501 aggacaccgt tgccttataa tcaaacaaaa acaaaatata taatatagtg gattgaattt
    10561 aaatcaggac aaggcgacga agccgcagat agtacggcaa ggcgaggcaa cgctgtactg
    10621 gtttttgtta atccactata ttgttaatcc actatataaa tccagcacaa aacgggatcg
    10681 gtgattcttg tccgcaagaa tcgttgattt tctctattac acggataatc atcatgcgct
    10741 tcacacacac caccccattt tgttccgtat tgtccaccct cggtcttttt gccgtttccc
    10801 ctgcttactc atccattgtc cgcaacgatg tcgattacca atattttcgc gactttgccg
    10861 aaaataaagg cgcgttcgcc gtaggtgcaa gcaatatttc catccaagac aagcaaggca
    10921 aaatattagg cagggttctc aacggcatcc ccatgcccga cttccgagtc agcaaccggc
    10981 aaaccgccat cgccaccctg attcaccccc aatacgtcaa cagtgtcaaa cacaacgtcg
    11041 gctacggttc catacaattc ggcaacgaca cccaaaatcc agaagaacaa gcctatacct
    11101 accgcctcgt atcacgcaac ccgcacccgg actacgacta ccaccttccc cgcctcaaca
    11161 aactggttac cgaaatctca cctgccgcac tcagcagcgt acccttgctt ggaaacggcc
    11221 agccaaaggc caatgcctac ctcgataccg accgcttccc atactttgta cgactcggct
    11281 caggcacgca acaagtccgc aaagcagacg gcacgcgtac acgaaccgcc ccggcatacc
    11341 aatacctgac cggcggcacg ccgctgaaag tattggggtt ccaaaaccac ggcttactcg
    11401 tcggcggcag cctgaccgac caacccctta acacctacgc aatcgccgga gacagcggtt
    11461 cccccctgtt tgccttcgac aagcatgaaa accgctgggt gcttgcgggc gtactcagca
    11521 cctacgccgg cttcgataac ttcttcaaca aatacatcgt cacgcaaccc gaattcatcc
    11581 gttccaccat ccgccaatac gaaacccggc tggatgtcgg gctgaccacc aacgaactca
    11641 tatggcgcga caacggtaat ggcgacagca ccctgcaagg gctcaacgaa cgcatcaccc
    11701 tgcccattgc aaacccttcg cttgccccac aaaacgacag caggcacatg ccgtctgaag
    11761 atgccggcaa aacgctcatc ctatccagca ggttcgacaa caaaacactg atgctggcag
    11821 acaatatcaa ccaaggcgca ggcgcattgc agttcgacag caacttcacc gtcgtcggta
    11881 aaaaccacac atggcaaggt gcaggcgtta tcgtagccga cggcaaacgc gtcttctggc
    11941 aagtcagcaa ccccaaaggc gaccggctct ccaaactggg cgcaggcacg cttatcgcca
    12001 acggacaagg catcaaccag ggcgacatca gcatcgggga aggcactgtc gtactcgccc
    12061 aaaaagctgc ttcagacggc agcaaacaag cattcaacca agtcggcatc accagcggca
    12121 ggggcacggc cgtcctcgcc gacagccagc aaatcaaacc cgaaaacctc tatttcggct
    12181 tcaggggcgg acggctcgac ctcaacggca acaaccttgc ctttacccat atccgccatg
    12241 cggacggcgg cgcgcaaatc gtcaatcaca accctgacca agccgcgaca ctgacgctga
    12301 ccggcaaccc cgtcctcagt cccgagcatg tcgagtgggt gcaatggggc aaccgtccgc
    12361 aaggcaacgc ggcggtttac gaatacatca acccgcaccg caaccgtcgg accgactact
    12421 tcatactcaa acccggcggc aacccgcgcg aatttttccc gttaaatatg gaaaactcaa
    12481 caagctggca atttatcggc aacaacaggc aacaggccgc caaacaagtc gcccaagccg
    12541 aaaatgcccg ccccgaccta attaccttcg gcggatactt gggtgagaac gcgcaaacgg
    12601 gcaaagccgc accgagttac agcaaaacca atatcgaatg ggtgaatggt ccaaacaccc
    12661 cacacaagcc ctcgccctat acgaatacgc caacccgcac aggggcaggc gtaccgacga
    12721 ttaccgcctc aaagaaggcg gcaaccccgg cgcctacttc ccatggaatg cctacagcac
    12781 ccaagactgg gaatttctcg gacatgaccg gcgaagcagc catagaaaaa acccgccata
    12841 tcgcaaatgc cgccgtatac ggccggcccg aataccgtta caacggcgca ctcaacctgc
    12901 actatcgtcc caaacgcacc gacagcacgc tgttgctcaa cggcggcatg aaccttaacg
    12961 gggaagtctt gattgagggc ggcaatatga ttgtgtcagg caggcccgta ccccatgcct
    13021 acgaccacca ggccaaacgc gaacccgttc ttgaaaacga atggaccgac ggcagcttca
    13081 aggctgcacg gttcaccctg cgaaaccatg cccgactgac ggcagggcgc aataccgcgc
    13141 atctggacgg cgacataacc gcatacgatc tgtccggcat cgacctcggc tttatccaag
    13201 gcaaaacacc ggaatgctac cgctcctacc atagcggcag cacccactgc acacccaacg
    13261 ccgttttaaa agccgaaaac tatcgtgcac tacctgcaac gcaagtacgc ggcgacatta
    13321 cccttaacga ccgttcagag ctccgcctgg gcaaagcaca cctgtacggc agcatccgtg
    13381 ccggcaaaga caccgcagtc cgcatggaag cagacagcaa ctggacactt tcccagtcca
    13441 gccacaccgg cgcactgacg cttgacggcg cacaaattac cctgaacccc gatttcgcca
    13501 ataatacaca caacaaccgc ttcaacacac tgaccgtcaa cggcacactt gacgggttcg
    13561 gcacattccg attcctgacc ggcatcgtcc gaaaacaaaa tgcccccccc ctcaaactgg
    13621 aaggggacag ccgcggcgca ttccaaatcc acgtcaaaaa caccggacaa gaacctcaaa
    13681 caaccgaatc gcttgcactt gtgagcctca atccgaaaca cagccaccaa gcccgattca
    13741 ccctccaaaa cggctatgcc gatttgggtg cctaccgcta catcctccgc aaaaacaaca
    13801 acggatacag cctgtacaac ccgctcaaag aggccgaact tcaaattgaa gccacgcgtg
    13861 cggaacatga gcgcaaccaa caggcataca accaattaca ggcaaccgac atcagcagac
    13921 aggttcaaca tgactctgac gcgaccaggc aggcactaca ggcctggcag aacagtcaaa
    13981 ccgaacttgc ccgcatcgac agccaagtcc aatatctgtc cgcccaattg aaacagacag
    14041 acccgctgac cggcattctg acgcgtgccc aaaacctgtg tgccgcacaa ggatacagtg
    14101 tcgatatctg ccgtcaggtt gccaaagccg ccgacacgaa cgacctgaca ctcttcgaaa
    14161 ccgaactgga tacgtatata gaacgtgtag aaatggccga atccgaactt gacaaagcac
    14221 ggcaaggcgg cgatgcgcaa gccgtcgaaa cagcccggca cgcctacctg aacgcactca
    14281 accgtctgtc ccgacaaatc cacagtttga aaaccggcgt tgccggcatc cgtatgccga
    14341 acctggccga actgatcagc cggtcggcca acaccgccgt ttccgaacag gccgcctaca
    14401 ataccggccg gcaacaggcg ggacgccgca tcgaccgcca ccttaccgat ccgcagcagc
    14461 aaaacatctg gctggaaacc ggtacgcaac aaaccgacta ccatagcggc acacaccgtc
    14521 cctaccaaca aactaccaac tatgcacata tcagcatcca aaccggcatc accgaccgtc
    14581 tcagtgtcgg tacaatttta accgatgagc gcacaaacaa ccgttttgat gaaggcgtat
    14641 ccgcccgaaa ccgcagcaac ggcgcacatc tgttcgtcaa aggggaaaac ggcgcactct
    14701 ttgccgcggc agatttaggc tacagcaaca gccgtacccg atttaccgat tatgacgggg
    14761 ctgccgtccg ccgccacgca tgggatgcag gcatcaacac cggcatcaaa atcgataccg
    14821 gcatcaacct cagaccctat gccggcatcc gtataaaccg cagcaacggc aaccggtacg
    14881 tactcgacgg cgcagagata aacagcccgg cgcaaatcca aaccacatgg catgccggca
    14941 tccgtctcga taaaaccgtc gaactgggtc aagccaagct gacccccgcc ttcagcagcg
    15001 attactacga tacccgccaa aacagcggtt ccgccctcag cgtcaacgac cgtaccttac
    15061 tgcagcaagc cgcccacggc acactgcata ccctgcaaat cgacgccgga tacaaaggct
    15121 ggaacgccaa acttcatgcc gcttacggca aagacagcaa caccgcccgc cacaaacaag
    15181 caggaatcaa aataggctac aactggtaac aagccgataa aaatgccgtc tggaacccgc
    15241 gtttcagacg gcatttgcgt taaaaatagt aaaccgttcc aaaagggagt agaatagtgc
    15301 cgtttccaac cctgcgcctg taccgtcagg cttttattat ggaccttccc agttcgtttt
    15361 tactgaacgc cccttccgat tccaaacgac aataaccatc ccgccggaat gcctccccgc
    15421 acacggcggg cggagcattt atgagcatcg aaccaacccc tccgaacctt gaaaacgacg
    15481 gtatcgaaaa cgatgtagaa cgcgtttccg ccgatttcga ccgtgtccac tccctctgcg
    15541 aaattctcga acctgctttt gaacaaatcg aaaacggcac accgcttgaa gacgcgccgc
    15601 tgcgcgacaa gctgaccgag ctgaccgttc tcttgagcga gctgcaccct gccgacgtgg
    15661 cggcggtatt ggaatcgcta ccgccgcgcg aacgcaatat cgtctggatt ctggtcaaac
    15721 cggaagacga cggcgaagta ttgctggaag tatccgacgc ggtgcgcgaa acgctgatcg
    15781 agtcgatgga caaagacgaa ttgttggcag cggtcgatga tttggacgcg gacgaattgg
    15841 cggaactggc agacgatttg ccgcaccaag tggtttacga agcgctacaa acccgcgatg
    15901 aggaagaacg cgcccaagtc aaagcggcaa tgtcctacga agacaaccaa gtcggtgcga
    15961 ttatggactt cgagttggtc agcatccgcg ccgatgtcgc ctgtgaagtg gtgctgcgct
    16021 atctgcgccg cttcgacagc ctgcccgacc ataccgacaa gatttttgtg gtcgatgaaa
    16081 acgacgtact gcaaggcgtg ctgcccatcc gcaaactttt ggtcgccgat cccgaagatt
    16141 tggtggaaaa cgtgatggcg aaagatgtcg tgcgtttccg cgccgaagac gacgtggaag
    16201 aagcggcgca ggcgtttgaa cgctacgact tggtaactgc gccggttgtc gatgaaaaca
    16261 aaaagctcat cggtaggatt accgttgacg agatggtgga cgtcatccgt gaagaatccg
    16321 aagcggatat gttgaacatg gcaggtttgc aggaagagga agacctgttc gcccccgtct
    16381 tggattccgt caaaaaccgc tggatgtggc tcgccgtcaa cctctgcacc gccttcctcg
    16441 ccagccgcgt catcggcgcg tttgaaggca gtatcgaaaa aatcgttgca ctcgccgcgc
    16501 tgatgcccat cgtcgccggt atcggcggca actcgggcaa ccagacgatt accatgattg
    16561 tccgcgccat ggcgatgggg cagttgacgg gaatgcaggc ggggcgcttg ttgaaaaaag
    16621 aagtcggcgt tgccctagtc aacggcatta tctggggaac cgtcatgggc gcggtttcat
    16681 ggctgctcta cggcagcctc ggcatcgggc tggttatgat tgccgcgatg acgctcaacc
    16741 tcctgctggc ggcaaccgtc ggcgtattaa ttcccgtggt aatggaaaag ttcggacgcg
    16801 atcccgcact gggcagctcg gtgctgatta ccgccgttac cgactccggc ggcttcctga
    16861 ttttcttggg gctcgccacc ctattcctgc tttaaatgcc gtctgaaccc gcgcaaaaat
    16921 gccgtctgaa gcggaagctg cttcagacgg catttgacta tttatccttg ttgcacaaga
    16981 ttattggacg gtatgccggg gcagcccttt ggcaacgccg accacatcct ccccgaacag
    17041 cgcgttgaca tcggtttcgt caaacacata tttgctgtgg cagaaatcgc aatcgacttc
    17101 gatgctgcct tgttccgcca ccacgccgcc gacttcttcc ccgcccagca tcaacagcat
    17161 atcgctgact ttgccgcgcg aacaggtgca tgaaaattca aacgtttccg gctcgaacac
    17221 gcgcggcggc gtttcgtgga acaggcggta taaaacgtgt tgcgcatcca attctgccag
    17281 ctcctccgcc gtcagcgtgc gcgccagcgt actgacgtgt tcccatgcct cttcatccaa
    17341 cacctcttca ggcagacgct gcaccagcag accgcccgcc gcttcatcgc ttgcagacag
    17401 gacgatgtgc gtatcaagct gttcggaacg tttcatatag ttcatcaaca tttgcgcgat
    17461 accgtcgcct tccaaaggca ctacgccctg ccagggttcg ccgtctttgg gctgcagcgt
    17521 caatacgaac acgccgttgc cgcccaaaag gtcgccgagg ctttcgtcat cggctatttc
    17581 tgccgcctcg tcccaccgcg cggtcgcacg gacggtacgg tcggaagtcg cttccgcaac
    17641 cagcattttc agccgcccct gcccctgaac ctgcacaatc agcgtgcctt cgtttttgag
    17701 gttgcccgac agcagaacac cggcagccaa cagctcgccc aaggcgcggc ggatggcggc
    17761 gggatagttt ttctgtttta caatgtgctg ccacacgttt tccagacgga cgtgcagccc
    17821 gcgcacgggc atatcgtcga agataaagcg ggtacgcaca tcggcgcggt tgatggcggt
    17881 ttgattcatg attttctctg actgattgtt cggatggcgg ctatatggtt gcggtcggcg
    17941 cgaaaacaag acggacggcg gatgcgcttc ccaaattatc aataaattat ataaaaatca
    18001 acatattaac tcaatctaac aagccgtttt ttgccaaaca gccgtttttt tatatacaat
    18061 caacaagata ttttcgactg atacagcata acatcgcacg gcggcacgat gcctcctgcg
    18121 cggaaacacc gatatggatt cttttttcaa accggcagtt tgggcggttt tgtggctgat
    18181 gtttgccgtc cgccccgccc ttgccgacga gttgaccaac ctgctcagca gccgcgagca
    18241 gattctcaga cagtttgccg aagacgaaca gcccgtttta cccatcaacc gagcccccgc
    18301 ccggcgggcg ggcaatgccg acgaactcat cggcagcgcg atggggctta acgaacagcc
    18361 cgttttaccc gtcaaccgag tccccgcccg gcgggcgggc aatgccgacg aactcatcgg
    18421 caacgcgatg gggcttaacg aacagcccgt tttacccgtc aaccgagccc ccgcccggcg
    18481 ggcgggcaat gccgacgaac tcatcggcaa cgcgatggga cttttgggta ttgcctaccg
    18541 ctacggcggc acatcggttt ctaccggttt tgactgcagc ggcttcatgc agcacatctt
    18601 caaacgcgcc atgggcatca acctgccgcg cacgtcggca gaacaggcac ggatgggtac
    18661 gccggttgcc cgaagcgaat tgcagcccgg agatatggtg tttttccgca cgctcggcgg
    18721 cagccgcatt tcccatgtcg gactttatat cggcaacaac cgcttcatcc acgcgccgcg
    18781 cacggggaaa aatatcgaaa tcaccagcct gagccacaaa tattggagcg gcaaatacgc
    18841 gttcgcccgc cgggtcaaga aaaacgaccc gtcccgcttt ctgaactgat ttcccaagga
    18901 atacgcaatg agtatgcccg aaatacccaa atggtacgac gatgacggac agatcgtgtc
    18961 ctgtaccgaa aagatcaaag tgatgtccga aaatatggcc gagctgtatc agacggcaca
    19021 agacgcgttt gaagacgcgc tgctgatggg ttgcggcgaa cgtcagttgc gcgattacct
    19081 gctcgcgctg attgaaggtt tggaaaatcc ctaccgcaaa gtctgaacac gccccggttg
    19141 ctgcggcacg gtttatccgt gccgtttttg cgtttgtgcg cggcttcggc ttttcagacg
    19201 gcatatttga cgttatgatt aaacagttaa caagatttat cacaacgccg tcaaaagaca
    19261 gacacacaac atgaacatca tccgcgcgct cctcatcatc ctcggctgcc tcgccgccgg
    19321 cgaaaccgcc gttttcctag caggcatcaa actgcccggc agcatcgtcg gcatgggcgt
    19381 gctgtttgcg cttttgcagg cgggttgggt caaaacgtct tggctgcaac agcttaccga
    19441 cgcgctgatg gcgaatctga cgctgtttct cgtgccgccc tgcgtggcgg tcatcagcta
    19501 tttggatttg attgccgacg attggttttc gatactggtt tccgcctccg ccagcacttt
    19561 gtgcgtactg ctggttacag gcaaggttca ccgctggata cggagcatta tctgatgaac
    19621 gaaatcctca ggcagcccag cgttctgctt ttcctcacgc ttgccgtgta cgcgcttgcg
    19681 attatcgtgc gcacgcgcac gggcaatatc ttctgcaacc ccgtactcgt cagcactatc
    19741 gtgctgattg cctacctgaa aatcctcgac atcgattatg cggtgtacca caacgccgcg
    19801 cagtttatcg atttctggct caagcccgcc gtcgtcgtgc ttgccgtgcc gctctaccaa
    19861 aaccgccgta aaatcttcaa ccaatggctg cccgtcatcg tttcacagct tgcgggcagc
    19921 gttacgggca ttgttacggg gatgtatttt gccaaatggc tgggcgcgga acgcgaagtc
    19981 gtcctctcgc tcgcgtccaa atctgttacc aaccccatcg ccattgaaat tacccgctcc
    20041 atcggcggca ttcccgccat taccgccgcc accgtcatca ttgccggtct ggtcggacag
    20101 attgccggtt acaaaatgct gaagaacaca gtcgtcatgc cctcgtccgt gggtatgtcg
    20161 ctcggcacgg cttcgcacgc gatgggcatt gccgcctcgc tcgaacgcag ccgccgcatg
    20221 gcggcatacg cggggctggg gctgacgttc aacggcgtac tgaccgcgct gattgcgccg
    20281 ctgcttatcc ccgttttggg gttctgaacc cgtttcagac ggcatttcag cccatgctgt
    20341 ctgaacgccg acacactcgc aaggagaacc gttatggctg tcaacctgac tgaaaaaacc
    20401 gccgaacaac tgcccgacat cgacggcatt gccctctaca ccgcccaagc aggcgtgaag
    20461 aagcccgggc ataccgacct gacactgatt gccgtagccg ccggcagcac cgtcggtgca
    20521 gtcttcacga ccaaccgttt ctgtgccgcg cccgtccaca tcgccaaatc gcaccttttc
    20581 gacgaagacg gcgtgcgcgc cctcatcatc aacacgggca acgccaacgc gggtacgggc
    20641 gcacagggca gaatcgatgc tttggcagtg tgtgccgccg ccgcccggca aatcggctgc
    20701 aaaccgaacc aagtgctgcc cttctccacc ggcgtgattc tcgaaccgct gcccgcagac
    20761 aaaatcatcg ccgcgctgcc caaaatgcag cctgccttct ggaacgaagc ggcacgcgcc
    20821 atcatgacca ccgacaccgt gcccaaagcc gcctcgcgcg aaggcaaggt cggcgacaaa
    20881 cacaccgtcc gcgccacggg catcgccaaa ggctcgggca tgattcatcc caatatggcg
    20941 accatgctca gtttcatcgc caccgatgcc aaagtttccc aacccgtcct ccaactgatg
    21001 acgcaggaaa tcgccgacga aaccttcaac accatcaccg ttgacggcga caccagcacc
    21061 aacgacagct tcgtcatcat cgccaccggc aaaaacagcc aaagcgaaat cgacaacatc
    21121 gccgacccgc gttacgccca actcaaagaa ttgttgtgca gcctcgcgct cgaactcgcc
    21181 caagccatcg tccgcgacgg cgaaggtgcg accaagttca tcaccgtccg cgtcgaaaac
    21241 gccaaaaccc gcgacgaagc ccgccaagcc gcctacgccg tggcacgttc gccgctggtc
    21301 aaaaccgcct ttttcgcctc cgaccccaac ctcggcaggc tgctcgccgc catcggttat
    21361 gccggcgttg ccgacctcga taccgacctc gtagaaatgt atctcgacga tattttggtt
    21421 gccgaacacg gtggacgcgc cgcaagctac accgaagcac aagggcaggc ggtgatgtcg
    21481 aaggccgaaa tcaccgtccg catcaagctg catcgcggac aagccgccgc caccgtctat
    21541 acctgcgacc tgtcgcacgg atacgtttcc atcaacgccg actaccgttc ctgacccgac
    21601 acggcttcag acggcataca taaaatgccg tctgaaccgc cggacaacat accatgacct
    21661 ccacattccc ccgccgcctc gcccgcaaaa tccgccaaac ccgccgcctg tcgcgcaaaa
    21721 gcatcgcctt tctgttcctt ttggcaggtt cggcactcgt cgccctgacc gcgctgtttt
    21781 ttgcccatct tgccgatttt gcgctggaac tgaacgccaa actggttcaa caatacccgt
    21841 ggttcgcgtg ggtcgcgctt cctttgggtt tgccgcttat tgcgtggctc acacgcaaat
    21901 tcgccccctt caccgccggc agcggcatcc cgcaggtcat cgcctcactg tcgctgccct
    21961 acggcgcaca gaaaacgcgg ctgatccgcc tcgggcagac gctgctgaag attccgctga
    22021 cctttttggg tatgctgttc ggcgcgtcca tcggacgcga aggtccgtcc gtgcaggtcg
    22081 gcgcggcagt gatgggcgcg tggggcgcgt ggtgcaagaa acacggcttg gcattcaaag
    22141 ggatgcagga aaacgatttg atggcggcgg gcgcggcggg cggtttggca gccgcgttca
    22201 acgcgccgct ggcgggcgtg attttcgcca ttgaggaact cgggcgcggc atcatgttgc
    22261 gctgggagag gcaaattctt ttgggcgtgc tcgcctccgg tttcatacag gtcgccattc
    22321 agggcaacaa cccgtatttt tccggcttca acggcggcgt attggaacat atctttctgt
    22381 gggtcgcact gtccggcctg gtttgcggcg cggcgggcgg gctgttcgga cgtttgctct
    22441 atcgcggtgc ggcggcattt gcaccacgca agatacgcgg cttcatccgc aaccgtccgc
    22501 tgctgctggc ggcactgatg gggctgctgc tcgccctgct cggcacgttc taccaaggca
    22561 aaacctacgg caccggctac cacgaagccg cccaagccct gcacggcatc tatgaagccc
    22621 ccttcggact cgccgccgcc aaatggctcg ccaccgtatt cagctattgg gcaggcgttc
    22681 cgggcggcat tttcactccc tcgctgacca taggcgcggt tttgggcgag catatcgccg
    22741 ccatcgccga catatcgcag ggtgcaaaca tcatcgtcct catctgcatg gcggcatttc
    22801 tggcgggcgc gacacaatcc ccgattactt ccgccgtcgt cgtcatggaa atgacgggcg
    22861 gacaaagcct gctgttttgg atgctaattg cctgcatttt cgcctcgcag gtttcgcgcc
    22921 agttttcgcc gcgtccgttc taccacgcat cgggaatgcg cttccgccag cgcgtgcttc
    22981 aggaaaccac cgcccaaacc ggcaatgcgc ccgcaagacc gcaaacagca aacagcaaaa
    23041 cgggaatgcc gtctgaaaat taaaacgccc ccgatcaaac gccggcagcc gccttgattt
    23101 gaataccgtt ccgccgccgc ttgaaatttc agcaacaatg ccgtctgaac gacagaatgc
    23161 ggttttcaga cggcatttcc acatcccgat attgcctaaa caaaaccgaa gcgtttgcta
    23221 taattctatt ttttaccgca cacgcaccaa tcatgtttcc cgatttctcc caaaccctct
    23281 ccaaagaccg ccacttccta cgttccgcct tcaaaaatcc caacaaatac ggcgggttgt
    23341 ccaaagtcga agaaaaatac cgaaaatcgc acgaaatctt tttgaaacgt ttggcagcct
    23401 tgcccaaacc cgaattcgac aacaccctgc ccgttcacga aaaacttgac gaaatcaaaa
    23461 aaaccgttgc cgaacatcag gtaacgatta tttgcggcga aaccggttcg ggcaagacca
    23521 ctcagttgcc caagatttgt ctggaactcg ggcgcggggc ggcgggtttg atcgggcata
    23581 cccagccgcg ccgtttggcg gcgcgttccg tagcagagcg gattgccgaa gagctgaaat
    23641 ccgaaatcgg cagcgcggtc ggctataaag tgcgcttcac cgaccacacc tcgcgcgatg
    23701 cctgcgtcaa gctgatgacc gacggcatcc tgctggcgga aacccagacc gaccgttatc
    23761 tcgccgccta cgacacgatt atcatcgacg aagcgcacga gcgcagcctg aacatcgact
    23821 tccttttggg ctatttgaaa caactcctgc cgcgccgccc cgatttgaaa gtcatcatca
    23881 cctcggcaac gatagacgca gaacgctttt cccaacactt caacggcgcg cccgtgctgg
    23941 aagtgagcgg acgcacctat cccgtcgaaa tcctctaccg accgctgatc ggcaaagacg
    24001 aagacgacgc ggaaatagaa ttgaccgacg cgattgtcga tgcggcggac gaattggcgc
    24061 gatatggcga aggcgatatt ttggtattcc tgccgggcga acgcgaaatc cgcgaagccg
    24121 ccgaagccct gcgcaaatcc acgctacgcc gcaacgacga aatcctgccc ctgttcgcac
    24181 gcctgtcgca cgccgagcag cacaaaatct ttcacccctc cggagcgaaa cgccgcatcg
    24241 tgctggcaac caacgtcgcc gaaacctcgc ttaccgtgcc gggcatcaaa tacgtcatcg
    24301 acaccggcct cgcgcgcgtc aaacgctatt ccgcacgggc gaaagtggag cagcttcata
    24361 tcgaaaaaat ctcccaagcc gccgcccgcc aacgctccgg ccgctgcgga cgcgtctccg
    24421 caggcgtatg tatccgattg ttttcagaag aaaatttcaa caaccgcccc gaatttaccg
    24481 accccgaaat cgcccgcagc aacctcgccg ccgtcatcct gcgcatggca tcgctgaaac
    24541 tcggcgacgt agcggcattc ccatttttag aaatgcccga ttcgaggtat attaatgatg
    24601 ggtttcaggt gttgctggaa ttaggggcag tggaggccgc ctgaaaacaa gtaggatata
    24661 cacttctacc tgacaaagac caacaaacga taaaactacg gcacatctag atgcccaacc
    24721 tacaacattg cacacggtaa aaacatgaaa cacttactca tcgattttga aaacgtccag
    24781 ccgcaaaact tagacaaatt actaaccgaa aatacccata tttggctatt tataggtgta
    24841 ttacacaaaa tgttacctat tagtctggtg caatccctac tacgtttcgg cgaacgtgtc
    24901 catcttgtcc agttacaaaa aacggggaaa aacgcattgg atttttacct gtcctattac
    24961 ctcggacaaa ttaccgccac agaccccaat gcccaaatcg gcatactctc gcgtgatgga
    25021 ggatacgatg ttctggtcga acatattttg aaaaaccacc aggcgaaggg tatcgtgcgc
    25081 ctagccaata tagatgaagt acaacatcag aaaattacta ccgaaccgcc gtcagcattg
    25141 ctggaaaaca ctcctcagcc tgaaaccacc ctcaaaccac agcaaccatt aacttcctat
    25201 ttccaagcag ccctaactgc actgcgccgc cccgacgctt tccgcccctg ccgcctgcat
    25261 aacctgcgac aaaatctgcg taagcatatt ttgagtgatt tgtttaaaga aaaaaccgat
    25321 gaagaatgcg aaataaccac tgctaacgtt atcaataaac tcaaagcaca aaacttcatc
    25381 agcattgatg aacaggaaac cgtttcctac catctcagtg ataatgattt gttacaaaga
    25441 atccaacgcc atattttaag ccaacgtccc aaaacctacg ctgattttca agccgtcgtg
    25501 caaaaccgag cagatgcact tcacttaaca gtcggtacca acgacattca atcctttgcg
    25561 cgacatttgc gcgaccaaaa cctgatccgc caaaacaatg ggaaaattga atatgcaccg
    25621 tttactgaac ctaaaccaca gccaacgccc aagcagccta aaaaaaccgc atgggaacct
    25681 gatgaaatta tttggaaaaa agtgattgcc gcgttatcgt taaagaaccg tcctaataaa
    25741 accaaaactt tacgcaatac aatccaggca ctcacaaaat ccaatgcaca agaaactgac
    25801 aaactgctac aacatttaca agatacccaa gtcctacgta ttgacggtac taaaattgtg
    25861 tatatcaagt aggatgggca tttatgcctg acctacaaaa ccaaaaacaa cctaacaccc
    25921 ttaatcaact ccacaaaccc ttttcagaca acctcgtttt ttgaaaaaca atctgtaaac
    25981 agataactgc tgaagaatac cgttgccgag ccccaaaacc tgcctgcaac ttttattgtg
    26041 aactgcccat tatgaaaaaa tcccttttcg ttctctttct ctattcatct ctacttaccg
    26101 ccagcgaaat cgcctatcgc tttgtattcg gaattgaaac cttaccggct gcaaaaatgg
    26161 cagaaacgtt tgcgctgaca tttgtgattg ctgcgctgta tctgtttgcg cgttataaaa
    26221 cttcgcggct gctgattgcg ctgtttttcg cgttcagcat tattgccaac aatgtacatt
    26281 atgcggttta tcaaagttgg atgacgggta ttaactattg gctgatgctg aaagaggtta
    26341 ccgaagtcgg cagtgcgggc gcgtcgatgt tggataagtt gtggctgcct gcgttgtggg
    26401 gcgtggcgga agtcgtgctg ttttgtagcc ttgccaagtt ccgccataag acgcattttt
    26461 ctgccgatat attgtttgcc ttcctaatgc tgatgatttt cgtgcgttcg ttcgacacga
    26521 aacaagagca cggtatttcg cccaaaccga catacagccg catcaaagcc aattatttca
    26581 gcttcggtta ttttgtcgga cgcgtgttgc cgtatcagtt gtttgattta agcaagattc
    26641 ctgtgttcaa acagcctgct ccaagcagaa tcgggcaagg cagtattcaa aatatcgtcc
    26701 tgattatggg cgaaagcgaa agcgcggcgc atttgaaatt gtttggctac gggcgcgaaa
    26761 cttcgccgtt tttaacccgg ctttcgcaag ccgattttaa gccgattgtg aaacaaagtt
    26821 attccgcagg ctttatgacg gcagtatccc tgcccagttt ctttaacgtc ataccgcatg
    26881 ccaacggctt ggaacaaatc agcggcggcg ataccaatat gttccgcctc gccaaagagc
    26941 agggctatga aacgtatttt tacagcgctc aggctgaaaa ccaaatggca attttgaact
    27001 taatcggtaa gaaatggata gaccatctga ttcagccgac acagcttggc tacggcaacg
    27061 gcgacaatat gcccgatgag aagctgctgc cgctgttcga caaaatcaat ttgcagcagg
    27121 gcaggcattt tatcgtgttg caccaacgcg gttcgcacgc cccatacggc gcattgttgc
    27181 agcctcaaga taaagtattc ggcgaagccg atattgtgga taagtacgac aacaccatcc
    27241 acaaaaccga ccaaatgatt caaaccgtat tcgagcagct gcaaaagcag cctgacggca
    27301 actggctgtt tgcctatacc tccgatcatg gccagtatgt tcgccaagat atctacaatc
    27361 aaggcacggt gcagcccgac agctatctcg tgccgctagt gttgtacagc ccggataagg
    27421 ccgtgcaaca ggctgccaac caggcttttg caccttgcga gattgccttc catcagcagc
    27481 tttcaacgtt cctgattcac acgttgggct acgatatgcc ggtttcaggt tgtcgcgaag
    27541 gctcggtaac gggcaacctg attacgggtg atgcaggcag cttgaacatt cgcgacggca
    27601 aggcggaata tgtttatccg caatgagtgg cgtaaaaacc aataaagaca aattaagatg
    27661 atgtcgggga agatgcccga ccgacaagac tatgcaaaat atgaaaaacc aagtacgcgg
    27721 atcaggcatg gatgcacgat ccaatccggc caatgtttca gacggcctgc aaaacagttc
    27781 gagccatatc ggtaccaaca cgcgctaccg cctgaccaag ctcggcgaac aaatggcgcg
    27841 cctgcccatc gacccgaaaa tcgcgcgcat tttgctggcg gcgaagaaac acgactgtat
    27901 ggcggaaata ttggtgattg cgtccgcgct gtcgattcaa gacccgcgcg agcggccgtt
    27961 ggaagcgcgc gatgctgcct ccaaggcaca cgaacgtttt accgacaagc agtccgattt
    28021 ccttgcctat ctgaacattt gggacagctt ccagcgtgag cgcgacaaag gtttgtccaa
    28081 caagcagctg gtgcagtggt gccgccaata tttcttgtcg cacctgcgga tgcgcgaatg
    28141 gcgcgagcta caccaccagc ttgcccaaac tgcgattgaa atgggtttga ccaccaaaga
    28201 agccgctttc agacgttctc ccgaagtcag gcagctcacg tcgtctgaaa atgcaggcga
    28261 ccaagaccta tccgccaaac tcaaacaaaa acaactggat aagaaacaac accgcgccca
    28321 aatccgcgct gccaaagaag cgggctacga acaaatccac cgcgccctgc tcaccggcct
    28381 catcgccaac gtcggcatga aatcacccga cggcaacgac tacaccagca cgcgcggcag
    28441 ccgcttccac cttttccccg cctccgccct gttcaaggcg aagcccaaat gggtgatggc
    28501 ggcagaactc gttgaaacga caaaacttta tgcccgcgac gtagccgcca tccagcccga
    28561 atggatcgag caggaagcgc cgcacctcgt ccgctaccac tatttcgagc cgcattggga
    28621 acaaaaacgc ggcgaagtca tcgccagcga acgggtaacg ctctacggcc tgaccgtcct
    28681 gccgcgccgc cccgtgtcct acggcagaat cgcccccgaa gaagcgcgcg aaatctttat
    28741 ccgcggcgca ttggtggcac aggaatgcga tttgaaagcg gacttttttg tccacaacaa
    28801 aaagctgatt aaagaaatta ccgaactcga acacaaatcg cgcaagcaag acgtgctggt
    28861 cgatgacgaa gccctgtttg cgttttataa cgaacgactg cccgaaatgg cttggaaaga
    28921 cgcgcaaggc agcgtttggg gaagtgaaga ttccgtacgg attattgaat ctgacaaagc
    28981 cgagaggtcg tctgaaaatg agcgcaacga gtttcgtaaa aacaagcgta atgggtctcg
    29041 ccaaaatgaa aatcacggca acaccgtagg ttgggttgaa aacccaacat cagccgcaac
    29101 tgcaaaaact gttgggtttg acaacccaac ctacgctact cagcaaccca ccccctcccc
    29161 cgagagggag ggtcggggag agggcaaaac agttgccgca caaaccaact tttccgcaac
    29221 cgcagcaaac cctctcccgc aggagaggga acagagtgcc tcagcttcaa cgttttcaga
    29281 cgacctgcgt cctgcaaatc tgcagcaaac cgccccctcc cccgtggggg agggctgggg
    29341 agagagcaaa acagttgcca cccaaaccaa cttttccgca acctcaacac tttcagacga
    29401 ccccaaaccc aaaaagcagc ctgcacctca aaaaggccgt ctgaaacccc tacccctcgc
    29461 cgacatccgc accttccaag cctggctcaa aaccgccgag tgcgacaatc cgcgcctgct
    29521 gttcctcagc cgcgacgatc tgatgcaaca cgccgccgca cacattaccg aagaacagtt
    29581 ccccaaattc tggcaaaccg cagacggcaa attcaaactt tcctaccgct tcgagccgca
    29641 ccatccgcta gacggcgtga ccatgaccgt gccgctgacc gtcctcaacc gcctgcacgc
    29701 gccatcgctc gaatggctgg tgcccggtat gttgcgcgaa aaaatccagc tgctgattaa
    29761 agcactgccg aagcaaatcc gccgcatttg tgtgcccgta cccgatttca tcaccaaatt
    29821 cctcgaaagc aatcccgacc gccaagcgac catcattccc cagttggcgc actttatcgc
    29881 caaaagcgcc agcgatatgc ggattctcga gcaaatcgac caagacgcat gggcggcgca
    29941 agaattgccc gaacactgct atctgaatct gcgcattatc gacgacggcg gacaagagct
    30001 tgccggcggc cgcaaactgc acgaattgca acaacagctc ggccaagccg ccgccgtcac
    30061 cttccgcgac aacacccaag aattcgagcg cgacaacgtt accacatggg acatcggaac
    30121 cctgcccgaa tccatcaaat tcgcccgcgg caaacaacag ctcaccggct acctcggcct
    30181 gcaaaaagaa aaagacggcc gcatcgccct gcgcctgttt gacaccaccg aagccgccga
    30241 acaggcacac cgtcaaggcg tcatcgaatt gatgaagctg caattaaaag agcaggtaaa
    30301 agacctgaac aaaggcatcc aaggcttcac ccaagccgcc atgctgctca aacacatcaa
    30361 cgccgacacc ctgcgcgacg acctcaccca agccgtctgc gaccgcgcct ttatcggcga
    30421 agacgagctg ccgcgcaacg aaaaagcctt caaagaacaa atcaaacgcg cccgtagccg
    30481 cctgcccgcc gtcaaagaag ccctcagccg ctacctgcag gaaaccgcag ccgcctacgc
    30541 cgaactcaac ggcaaactcg gcaaacatcc attgacccac ctcctaagac tacgcctgca
    30601 aaccctgctt gcccccggct tcgccacccg caccccgtgg gcacaatggc cgcgcctccc
    30661 catctacctc aaagccatga ccctgcgcct cgaaaaatac agcagcaacc ccgcccgcga
    30721 cgcagcccgc gaagccgata tacaggaatt ggaacaaatg tggcaggaaa aaaacgacgg
    30781 tttggtgaaa caaggacaac ccatttcaga caacctagcc gcgtttaaat ggatgattga
    30841 agaattgaga gtgtcactgt tcgcacagga attgaagaca ccgtatccag tgtcggtgaa
    30901 gaggttgtta aaagagtggg agaaaatttt ttaactgaat aattctgccg atcaaaattt
    30961 cttgacaaaa caaattttaa tgaatactat aagtagcatt atgagtttag aaaattttca
    31021 attaataaaa acacaattag gtgttcccag ttatgaaaat gatagagttg caatctatca
    31081 aggagattgt atccagttaa tggataagat ttcaaaagga tcattccaaa tgacaatcac
    31141 atctccacca tacaatattg gtaaagaata tgagtctatt ttagatttgg aacattatct
    31201 tgagtggtgt gaaagatgga tgcaatcaat acatcactta actgaagata gcggatgttt
    31261 ttggttaaat ttaggatact tacatgttga aaaaaaggga ctagcagttc ctattcctta
    31321 tcttttatgg gataaaacta actttttcct tttacaagag gtggtttgga attatgcagc
    31381 tggagttgca tgccgtaatc gattttcccc aagaaatgaa aagttattat ggtatgtgaa
    31441 aaatcctgct aaatatacat tcaatttaga tgctgtacgc gatcccaacg ttaaatatcc
    31501 aaatcagaaa aaaaatggga aattaaaatg taatcctcta ggaaaaaacc caacggatgt
    31561 ttggcaaata gcaaaagtca cttctggaag aaataggtca tcgagagaaa gaactgctca
    31621 tcctgcccaa tttccattgg aattaataga aagaataatc cgagcaagta gcaatcaaaa
    31681 tgatgtaatc ttagatccat ttatcggctc aggaacaacc gccttagccg gactaaaaaa
    31741 caaccgtttt gtcataggat ttgaaattaa cgatgagtat atagatatta taaaagaacg
    31801 cttcaaagag tatgatcttc aaaatacttg atacttgtat ataacggtat agaggataga
    31861 ccctcctcta tactgtattt acaatattta tttttgataa agtattttta gtttacttct
    31921 ataagcctct ggagagagcc tcgcctgctg gcctgtcgct gcagtttgag caatccaatc
    31981 cgtatgatct aaccaaccaa atctgataat tttaatttct ggacgcaatt ttaaatcagg
    32041 cataaatttt tcaaaattta tagttagata ataaccattt ttactcttac cagtaattcc
    32101 atcttgtggt tgtgcataac tcctattacc aaatatatat tttggatccg atgaagtttt
    32161 taattctatt gagtaatagt cgtctttaat atatacaata tctttgtcat atttattctt
    32221 ttctccttgc caattttcaa atctagcctc aatattagca ggaattaaag catgtaataa
    32281 cgcccctaca atctgaggag aaggaaaaaa atttttgcca atttgcaaat taccaattct
    32341 agacgagaaa atattttccc aactatctaa acaaagttgg acaatctctt tttctgacaa
    32401 tggatgctgc ttaatcagct cttctgtttt ggaaatccat aactcctcat tcaaagaagc
    32461 atacggcgat atttttgatc tattcatatt atttaatccc ttctacaagt tcagaaatat
    32521 taattgaaaa agacttagct aacagcgaga tattcaaaag acttatattt ctttctccgc
    32581 gttcaactga tccaatataa gtacgatgta atccaacttt ttctgctaat tcttcttgtg
    32641 accaaccatt aagtaaacga taatgtttta cacgcttacc aaactcaact aattcatttt
    32701 ccataatctg tattatttta ataagtgaat actttaagtc tacactctat aagtagcaca
    32761 cttaacaaac catatcctac tgcgtgaata ccatagcaaa ctgtagcctg catcaaaccg
    32821 cgtgcatgcc ttcgggcaca cactcggtct ttctaaacca ctcccccttt ccacccaaac
    32881 caaaggtcgt ctgaaaccca ttttcagacg accttttgcc actttgcaaa gcaagtattc
    32941 ccaccaccct ctccccaaat atcgcccaaa ccagtaaact tcccatattt caacaacttc
    33001 ttgaaagcca accatgtccg gtatctacct accccaccta tttccgcccc atatcgccga
    33061 acgcggcctt ttgtattttc agcagggcaa ggttcgcgat gtccgaaaaa cttccgccgg
    33121 gcgttatcgg gcctagcgct gtttgctgcc ggcggtctga ataatggtgg cgtcaacgac
    33181 ggcagcggat gctttctcta cttttaggtt tttttcggtc agttggcggt taatcagttt
    33241 gagcaattcg gacagggtgt cgtcttgcgc cagccagttg cggtaacggc ataaggtgct
    33301 gtaatcgggg atgctcagtt cgtcaaagcg gcaaaacagg ttgaagtcga tgcgggtgat
    33361 gaggctgtgc tcgagttcgg gatcggagag gctgtgccat tgtccgagca gaacggcttt
    33421 gaacatggac aacagcgggt aggcgggacg accgcggtgg tctcggaggt aacgggtttt
    33481 ttgacggttc aggtattgtt cgatcggttg ccaatcaatc acctggtcca acttcaatag
    33541 tgggaaacgg
//
LOCUS       DAXHNP010000004        31606 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.004, whole genome shotgun sequence.
ACCESSION   DAXHNP010000004 DAXHNP010000000
VERSION     DAXHNP010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 31606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31606
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.004"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(354..629)
                     /locus_tag="ACFM5C_000121"
     CDS             complement(354..629)
                     /locus_tag="ACFM5C_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6067907.1"
                     /translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTTGKGAKYTRV
                     FKPVAMRIVAGGMDKGTALRQEIAVKKLTAAQKRQLWEQAEKMPSET"
     gene            complement(626..1909)
                     /locus_tag="ACFM5C_000122"
     CDS             complement(626..1909)
                     /locus_tag="ACFM5C_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6067908.1"
                     /translation="MTVSKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
                     EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRVPILGRRRGWMLLTQAGLLAALAAYA
                     FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRIAAL
                     IPGSLSLVLADRMPWSEVFVITSLFMLPGLLMTLFLAREPVLPPSVPKTLKQTVVEPF
                     KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
                     AVAAGILGGVWMLKIGVNKALWIFGAVQAVTVLGFVWLAGFGHFDTVGTGERLMLAAV
                     IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
                     YVPFFQLCFILALPGMLLLLKVAPWNGEKTQDAGR"
     gene            complement(2060..3478)
                     /gene="glnA"
                     /locus_tag="ACFM5C_000123"
     CDS             complement(2060..3478)
                     /gene="glnA"
                     /locus_tag="ACFM5C_000123"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFC6067909.1"
                     /translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
                     EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQ
                     GYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESG
                     AWSSGLHLDGQNTGHRPTVKGGYAPVAPIDCGQDLRSAMVNILEELGIKVEVHHSEVG
                     TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
                     SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
                     KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
                     GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
                     EEDVRRIRMAPHPLEFEMYYSL"
     gene            3782..4591
                     /gene="aroE"
                     /locus_tag="ACFM5C_000124"
     CDS             3782..4591
                     /gene="aroE"
                     /locus_tag="ACFM5C_000124"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFC6067910.1"
                     /translation="MTALPRYSVFGNPVAHSKSPQIHRQFALQEGVDIEYGRICADIG
                     GFAQAVSTFFETGGCGANVTVPFKQEAFHLADEHSDRALAAGAVNTLILLKNGKLRGD
                     NTDGIGLANDITQVKNIAIEGKTILLLGAGGAVRGVIPVLKEHRPARIVIANRTHAKA
                     EELAQLFGIEAVPMADVNGGFDIIINGTSGGLSGQLPAVNPEIFRDCRLAYDMVYGEA
                     AKPFLDFARQSGAKQTADGLGMLVGQAAASYALWRGFTPNIRPVIEYMKAM"
     gene            4593..5294
                     /gene="mtgA"
                     /locus_tag="ACFM5C_000125"
     CDS             4593..5294
                     /gene="mtgA"
                     /locus_tag="ACFM5C_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HFC6067911.1"
                     /translation="MFRIVKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
                     MKQFEQEGRDVALDYRWVPYNRISVNLKKALIASEDARFAGHGGFDWGGIQNAIRRNR
                     NSGKVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
                     EWHYGIFGAEAASRYFYQIPAAKLSKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
                     LRRMGSAELPESDTD"
     gene            complement(5619..5694)
                     /locus_tag="ACFM5C_000126"
     tRNA            complement(5619..5694)
                     /locus_tag="ACFM5C_000126"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5659..5661),aa:Phe,seq:gaa)
     gene            complement(5885..6619)
                     /gene="lptB"
                     /locus_tag="ACFM5C_000127"
     CDS             complement(5885..6619)
                     /gene="lptB"
                     /locus_tag="ACFM5C_000127"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFC6067912.1"
                     /translation="MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVIGLLGPNGA
                     GKTTSFYMIVGLIAADAGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQN
                     IRAILEIRTKDKNQIDREIEKLLADLNIGHLRRSPAPSLSGGERRRVEIARVLAMKPH
                     FILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGAV
                     LASGKPDDLVGNEQVRSVYLGKNFKY"
     gene            complement(6693..7223)
                     /gene="lptA"
                     /locus_tag="ACFM5C_000128"
     CDS             complement(6693..7223)
                     /gene="lptA"
                     /locus_tag="ACFM5C_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HFC6067913.1"
                     /translation="MIQKICKLFVLIAFFSASPAFALQSDSRQPIQIEADQGSLDQAN
                     QSTTFSGNVVIRQGTLNISAARVNVTRGGKGGESVRAEGSPVRFSQTLDGGKGTVRGQ
                     ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
                     GRVSVVIQPSSTQKSE"
     gene            complement(7204..7785)
                     /gene="lptC"
                     /locus_tag="ACFM5C_000129"
     CDS             complement(7204..7785)
                     /gene="lptC"
                     /locus_tag="ACFM5C_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HFC6067914.1"
                     /translation="MKIRWRYGIAFPLILAVALGSLSAWLGRISEVEIEEVRLNPDEP
                     QYTMDGLDGRRFDEQGYLKEHLSAKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
                     EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVEAEKLHVDTESQYAQTDTPVSFQYGA
                     SHGQAGGMTYDHKTGMLNFSSKVKATIYDTKDM"
     gene            complement(7782..8318)
                     /locus_tag="ACFM5C_000130"
     CDS             complement(7782..8318)
                     /locus_tag="ACFM5C_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KdsC family phosphatase"
                     /protein_id="HFC6067915.1"
                     /translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
                     TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQV
                     GVEEAECAFVGDDVVDLPVMVRCGLPVAVPDAHWFTLQHAAYIAKRPGGAGAVREVCD
                     LIMQAQGTLGAALNEYIK"
     gene            complement(8383..9357)
                     /locus_tag="ACFM5C_000131"
     CDS             complement(8383..9357)
                     /locus_tag="ACFM5C_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFC6067916.1"
                     /translation="MAENGKYLDWAREVLHTEAEGLREIAAELDENFVLAADALLHCK
                     GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
                     ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
                     AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
                     PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
                     KTIAAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARIV"
     gene            9453..10508
                     /gene="tal"
                     /locus_tag="ACFM5C_000132"
     CDS             9453..10508
                     /gene="tal"
                     /locus_tag="ACFM5C_000132"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFC6067917.1"
                     /translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
                     AIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACGVCLAEHESTGGKTG
                     FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALEILVSDGISVN
                     LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIHVVASFFISRVDGALDTTLPDHLK
                     GKIAIALAKAAYQDWEQYFTTPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDNL
                     IGAHTVNTVPDATLKAFIDHGTAKATLTEGVEEAQAQLAETAALGIDVETLANRLQED
                     GLKQFEEAFEKLLAPLV"
     gene            10662..10952
                     /locus_tag="ACFM5C_000133"
     CDS             10662..10952
                     /locus_tag="ACFM5C_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067918.1"
                     /translation="MAKALEIISPNEIYSDLIFKDPVPPHTIYRELMKLVSRNASNER
                     IADRAFDFFSSGLMDGSATEEQYNALYDLTLLEEPGMELNKDEIMALINSLK"
     gene            10969..11856
                     /gene="gluQRS"
                     /locus_tag="ACFM5C_000134"
     CDS             10969..11856
                     /gene="gluQRS"
                     /locus_tag="ACFM5C_000134"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HFC6067919.1"
                     /translation="MYTGRFAPSPTGLLHIGSLLTAVASYADARSNGGKWLVRMEDLD
                     PPREMPGAASHILHTLEAFGFEWDGEVAYQSRRYALYEETLCRLKTAGLVYPCHCSRK
                     DWQTGARRGADGFVYNGRCRNPQQRPALQGKQPAWRIRVPDRDIGFSDGIVGGYAQNL
                     ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLDVPT
                     PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLNLPEAPEADRPAELLD
                     WAVAHWDMGKVPKHAITAP"
     gene            complement(11926..12936)
                     /gene="dusA"
                     /locus_tag="ACFM5C_000135"
     CDS             complement(11926..12936)
                     /gene="dusA"
                     /locus_tag="ACFM5C_000135"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HFC6067920.1"
                     /translation="MNDNTQTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMV
                     NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPS
                     PRVQKGAFGACLMNEVGLVADCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTL
                     RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
                     EEIAQHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI
                     QAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLKDNDGGLILEAWKEVERANM
                     RE"
     gene            complement(12967..13458)
                     /gene="dtd"
                     /locus_tag="ACFM5C_000136"
     CDS             complement(12967..13458)
                     /gene="dtd"
                     /locus_tag="ACFM5C_000136"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HFC6067921.1"
                     /translation="MRAVIQKTVGAKVDVVSENGTETCGKIDGGFVVLLGVTHSDTEK
                     DARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADATSGRRPSFSQAAP
                     AEQAQQLYLRTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
                     VPD"
     gene            complement(13532..14290)
                     /locus_tag="ACFM5C_000137"
     CDS             complement(13532..14290)
                     /locus_tag="ACFM5C_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6067922.1"
                     /translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
                     HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
                     VRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQQLLLKGLSFEGLMKR
                     YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRDPVKLGERYYLFKLSEVGKNPDA
                     QPFELVRNQLEQGLRQEKARLKIDAILEENGVKP"
     gene            complement(14361..15227)
                     /locus_tag="ACFM5C_000138"
     CDS             complement(14361..15227)
                     /locus_tag="ACFM5C_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6067923.1"
                     /translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
                     AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
                     KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEIKAAYDNISGFYKGTQEVQLGEI
                     LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
                     AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
                     ALLGKANIKPAK"
     gene            complement(15276..15554)
                     /locus_tag="ACFM5C_000139"
     CDS             complement(15276..15554)
                     /locus_tag="ACFM5C_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6067924.1"
                     /translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
                     VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
     gene            complement(15554..15844)
                     /locus_tag="ACFM5C_000140"
     CDS             complement(15554..15844)
                     /locus_tag="ACFM5C_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HFC6067925.1"
                     /translation="MEYFMLLATDGENVYEARMAARPEHLKRLETLKSEGRLLTAGPN
                     PLPEDSNRVSGSLIVAQFESLDAAEAWAEDDPYVHAGVYSEVLIKPFKAVFK"
     gene            complement(15847..16377)
                     /locus_tag="ACFM5C_000141"
     CDS             complement(15847..16377)
                     /locus_tag="ACFM5C_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HFC6067926.1"
                     /translation="MKFVSDLFSVILFFATYTVTKNMITATAVALVAGVVQAAFLYWK
                     YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
                     ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
                     FIIQGIYLSTCLKKED"
     gene            16666..19077
                     /gene="tspA"
                     /locus_tag="ACFM5C_000142"
     CDS             16666..19077
                     /gene="tspA"
                     /locus_tag="ACFM5C_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_164729270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark-like protein
                     TspA"
                     /protein_id="HFC6067927.1"
                     /translation="MKNNRQIKLIAASVALAASFQAHAGLGGLNIRSNLDEPFSGSIT
                     VTGEEAKALLGGGSVTVSEKGLTAKVHKLGDKAVIAVSSAQAVRDPVLVFRIGAGAQV
                     REYTAILDPVGYSPKTKSALSDGKTHRKTAPTAESQENQNAKALRKTDKKDSANAAVK
                     PAHNGKTHTVRKGETLKQIAAAIRPKHLTLEQVADALLKANPNVSAHGRLRAGSVLHI
                     PNLNRIKAEQPKPQTAKPKAETASMPSEPSKQATVEKPVEKPEAKVAAPEAKAEKPAV
                     RPEPVPAANTAASETAAESAPQEAAASAIDTPTDETGNAVSEPVEQVSAEEETESGLF
                     DGLFGGSYTLLLAGGGAALIALLLLLRLAQSKRARRTEESVPEEEPDLDDAADDGIEI
                     TFAEVETPATPEPAPKNDVNDTLALDGESEEELSAKQTFDVETDTPSNRIDLDFDSLA
                     AAQNGILSGALTQDEETQKRADADWNAIESTDSVYEPETFNPYNPVEIVIDTPEPESV
                     AQTAENKPETVDTDFSDNLPSNNHIGTEETASAKPASPSGLAGFLKASSPETILEKTV
                     AEVQTPEELHDFLKVYETDAADDLSALLQPAEALSVEENITETVAETPDFNATADDLS
                     ALLQPSEVPAVEENAAETVADDLSALLQPAEAPAVEENVTETVAETPDFNATADDLSA
                     LLQPAEVPAVEENAAEITLETPDSNTSEADALPDFLKDGEEETVDWSIYLSEENIPNN
                     ADTSFPSESVGSDAPSEAKYDLAEMYLEIGDRDAAAETVQKLLEEAEGDVLKRAQALA
                     QELGI"
     gene            complement(19250..19666)
                     /gene="gloA"
                     /locus_tag="ACFM5C_000143"
     CDS             complement(19250..19666)
                     /gene="gloA"
                     /locus_tag="ACFM5C_000143"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HFC6067928.1"
                     /translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
                     GYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGP
                     MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
     gene            complement(19691..20860)
                     /gene="lapB"
                     /locus_tag="ACFM5C_000144"
     CDS             complement(19691..20860)
                     /gene="lapB"
                     /locus_tag="ACFM5C_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HFC6067929.1"
                     /translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
                     YKSLDALVDRNSGRAARELAEVIDQQPQSYDLNLTLGKLYRQRGENDKAINMHQTLLD
                     SPDTTGAKRARVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD
                     WEKAVETARLLSHDEQTYQFEIAQFYCELAQAALFKSNFDAARFNVGKALEANKKCTR
                     ANMILGDIEHRQGNFPAAVEAYAAIEQQNHAYLSMVGEKLYEAYAAQGKPEEGLNRLT
                     GYMQTFPELDLINVVYEKSLLLKGEKEAAQTAVELVRRKPDLNGVYRLLGLKLSDMNP
                     AWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
     gene            complement(20871..21185)
                     /locus_tag="ACFM5C_000145"
     CDS             complement(20871..21185)
                     /locus_tag="ACFM5C_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly LapA
                     domain-containing protein"
                     /protein_id="HFC6067930.1"
                     /translation="MKLIYTVIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVV
                     LFGAFVVGIVFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESAK
                     QP"
     gene            21495..22493
                     /gene="ilvE"
                     /locus_tag="ACFM5C_000146"
     CDS             21495..22493
                     /gene="ilvE"
                     /locus_tag="ACFM5C_000146"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFC6067931.1"
                     /translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLSLAPGA
                     HALHYSSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETQAYLDALIE
                     LVKRAADEIPDAPAALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
                     KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
                     FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
                     ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
     gene            complement(22677..23462)
                     /gene="fabI"
                     /locus_tag="ACFM5C_000147"
     CDS             complement(22677..23462)
                     /gene="fabI"
                     /locus_tag="ACFM5C_000147"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFC6067932.1"
                     /translation="MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL
                     EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
                     DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
                     GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
                     RNVTIEEVGNAAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
     gene            complement(23617..24438)
                     /gene="dapD"
                     /locus_tag="ACFM5C_000148"
     CDS             complement(23617..24438)
                     /gene="dapD"
                     /locus_tag="ACFM5C_000148"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HFC6067933.1"
                     /translation="MSLQNIIETAFENRADITPSTVAPEVKEAVLETIRQLDSGKLRV
                     AECLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAG
                     FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
                     TGEIYQGRVPAGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
     gene            complement(24448..24678)
                     /locus_tag="ACFM5C_000149"
     CDS             complement(24448..24678)
                     /locus_tag="ACFM5C_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067934.1"
                     /translation="MPSERRRRGIKVPPPFCIDSGAEKAIPAARPIPKRQCSATARVL
                     LTNMRLRGTIAHSFQMNILLENTGKRPTKHLT"
     gene            complement(24648..26291)
                     /gene="pgi"
                     /locus_tag="ACFM5C_000150"
     CDS             complement(24648..26291)
                     /gene="pgi"
                     /locus_tag="ACFM5C_000150"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6067935.1"
                     /translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
                     LFDYSKNRLGEDTLQLLCRLAETADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
                     DAVYVDGRDVLPEIRRELNRALEFAHSLDDGSYQGITGKRITDFVHIGIGGSDLGPAM
                     CVQALEPFRRHIAVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAQAV
                     KAWYRGAGFSESETACHFCAVSADTAAAAAFGIAAERVFAMYDWVGGRYSVWSSVGLP
                     VMVAVGGARFRELLAGAHAMDSHFFHTPPRRNIPVLMALIAVWYNNFQHADGQTAVPY
                     SHNLRLLPVWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
                     RLIPCDFIVPMTAQGVEDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
                     LAPHKEFPGNRPSNSILLDRLTPYNLGMLMAAYEHKTFVQGVIWDINPFDQWGVEYGK
                     QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGVGAA"
     gene            26801..28033
                     /gene="pilG"
                     /locus_tag="ACFM5C_000151"
     CDS             26801..28033
                     /gene="pilG"
                     /locus_tag="ACFM5C_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4 pilus assembly protein PilG"
                     /protein_id="HFC6067936.1"
                     /translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
                     KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
                     PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
                     KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTV
                     MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
                     ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
                     LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
                     TLLVAMYLPLFNLGNVVA"
     gene            28107..28967
                     /locus_tag="ACFM5C_000152"
     CDS             28107..28967
                     /locus_tag="ACFM5C_000152"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HFC6067937.1"
                     /translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
                     AKKHLNLPLTEKESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
                     SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
                     LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAAL
                     GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
                     VNWWLTHPVL"
     gene            28969..29601
                     /gene="coaE"
                     /locus_tag="ACFM5C_000153"
     CDS             28969..29601
                     /gene="coaE"
                     /locus_tag="ACFM5C_000153"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258461.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFC6067938.1"
                     /translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
                     IALPEIRRLFGDTVFDTQGLLRRDILRKEVFASPSRKALLESVMLPLIFSEIKKQQET
                     FTDAVYGIVEIPLLTEKRQFISLIRRVLTISAPLEKRIGRVMARSGLTRGEVADIISH
                     QASESERLLLADDVLLNDGSLKSLREKTMRLHAFYSGIFASKPTQGKHND"
     gene            29594..29803
                     /locus_tag="ACFM5C_000154"
     CDS             29594..29803
                     /locus_tag="ACFM5C_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HFC6067939.1"
                     /translation="MTESRQTRLQVKCPTCQTAVVWEPENAFRPFCSQRCKLIDLGGW
                     ADGKYTVSGQTESLPEISEPDMAYR"
     gene            complement(29888..31564)
                     /gene="pilB"
                     /locus_tag="ACFM5C_000155"
     CDS             complement(29888..31564)
                     /gene="pilB"
                     /locus_tag="ACFM5C_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HFC6067940.1"
                     /translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
                     PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
                     PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
                     YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
                     AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
                     ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
                     ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
                     DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
                     CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
                     MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
BASE COUNT         7390 a         8898 c         8112 g         7206 t
ORIGIN      
        1 gttgacatat tgtgtgatat cgagggctgt accgtatttt cccatcgtat tttcccatcg
       61 tattttccca tcgtattttc ccgttcttta tatgagcggc aggcatcctc ataaaagaag
      121 ggataccgat aaggaaaaat accccagcat aaaaaatata ctgattaatc aatacaaatc
      181 caacaaacag ttcatcgtat tcttttctgt tggcgtataa aaatactgat atattccttc
      241 actttcatag ggcgacgctt tatgtaccgt cctgtgtgtt gaaacgtcgg ttttccttac
      301 cgcctgcccc gcttttccct gattgctgcc aactgccgtc cgaacttgaa ccgtcaggtt
      361 tcagacggca ttttttctgc ctgctcccac aattgccgtt tttgtgcggc ggtcagtttt
      421 ttgacggcga tttcctgcct gagtgccgtt cctttatcca tcccgcctgc aacgatacgc
      481 atcgccaccg gtttgaatac gcgggtatat ttcgcgcctt taccggttgt gtgggcggca
      541 agccgctgtt gcggattcgg gctgatgccg caatagaacg cgctgttttc acacaatatc
      601 aggtaaacgc tccagtttga cgcgttcatc tgcctgcatc ctgagttttc tccccgttcc
      661 aaggcgcaac tttcagcagc agcagcatac ccggcagggc aagtatgaaa cacagctgga
      721 aaaacggtac atacccgagc cattcaatca gataaccggc aaaggaattg atgaccgtac
      781 ggggaacagc ggacaggctg gtaaacagtg caagctgcgt tgcggtaaat gcgggattgg
      841 tctcgcgcgc catatacgat acaaacgccg ccgtccccaa acccacgccg actgcctctg
      901 cgccgataac tgccgccagc atcagcctct cgcctgtgcc gaccgtgtcg aaatgtccga
      961 accctgccag ccatacaaac cccaaaacgg ttacagcctg caccgcgcca aatatccaca
     1021 aggctttgtt tacgccgatt ttcagcatcc acacgccgcc caagatacct gccgccactg
     1081 ccggccacag tcctgcgttt ttggcaatca aaccgatgtc ggtcttgctg aaacccatat
     1141 ccagataaaa cggcgttgcc aacgcggttg ccatactgtc gccgagtttg taaaggaaga
     1201 taaacagcag cacgcataca gccgaagcga tgcccttgcg tgtaaaaaat tctttaaacg
     1261 gctctaccac tgtctgcttc aacgttttag gaacggaagg cggcaacacg ggttcgcgcg
     1321 cgagaaacag cgtcatcaga aggccgggca gcataaataa tgaagtgata acaaatactt
     1381 ctgaccacgg catcctgtct gccaacacca aactcaatga accgggaatc agggcggcaa
     1441 tccggtaggc gttcacatgg actgagttgc ccaaacccaa ttcctcgtcc gacaaaatct
     1501 cgcgcctgaa cgcatccaat acaatatcct gactggcgga aaaaaaagcg acaagcaccg
     1561 acaagccggc aatcaacggc agatgattcc gggggtttaa aaaggcatag gccgccaaag
     1621 ccgccagcaa ccctgcctgc gtcaacagca tccacccgcg ccgccggccc aaaatgggaa
     1681 ccctgaccgc gtccatcagc ggagaccaca aaaatttcca agtaaacggc agaccgatca
     1741 gcgccatcag cccgatgctc ttcaaatcca cctgctcgct gcgcaaccat gccggaatca
     1801 ggttaatcag aaagtacagc ggcagccccg aggtaaaccc cgtaaaaata cagacaagca
     1861 tatttcggga aaagatttgc ccgataaaac ctgatttcga tacagtcatg gttcaaacag
     1921 ccaagaaata aaagcctatt gtagcaaata tcgcccaacc gctgaaaaac accgaccctg
     1981 ctccgccgtt ttgccgttca aatgcaaaat gccgtctgaa actttgttca gacgacattt
     2041 ctactgaaac ctgagagttt tacaggctgt aatacatttc aaattccagc ggatgcggtg
     2101 ccatgcggat gcggcggaca tcttcctctt taaaggcgat gtagctgtcg atccagtctt
     2161 tgctgaatac gccgccgcgc aggaggaatt cgtggtcggc tttgagggcg gcgagggctt
     2221 cttccaaaga ggcgcagacg gtcggcacca atgcatcttc ttccggcggc agatcgtaca
     2281 ggtttttatc ggcagggtcg cccggatgaa ttttgttttg aataccgtcc aaaccggcca
     2341 tcaacaaagc ggcgaacgcc aagtatgggt tggcggtcgg atcggggaaa cgcgcttcga
     2401 tgcggcgcgc cttgctgctg ttcacggacg gaatgcggat ggaagcggaa cggtttttgg
     2461 cggaataagc cagtttggtc ggcgcttcaa agtgcggcac aaggcgtttg taggagttgg
     2521 tggacggatt ggtaatcgcg ttcagggctt tggcgtgttt gatgatgccg ccgatgtaat
     2581 aaagggcggt gtcgctcaaa ccggcatagc cgtcgccggc gaacaggttt tgaccgtctt
     2641 tccagatgga ttggtgaacg tgcataccgc tgccgttgtc gcccataatc ggtttgggca
     2701 tgaaggtggc ggttttgccg aagttgtggg caacgttttg aatcacatat ttcatgtctt
     2761 gggtttggtc ggcgcgttta accaaagtgg cgaagcgcgt gccgatttcc atttggctgc
     2821 cggtaccgac ttcgctgtgg tggacttcga ctttgatgcc gagttcttcc aaaatgttca
     2881 ccatggcgga gcgcaaatct tgaccgcagt caatcggggc aacgggcgcg taaccgcctt
     2941 tgacggtcgg acggtggcca gtattttgac cgtccaaatg caagccgctt gaccatgcgc
     3001 cgctttcgga agtgatttcg taacgggttt tgtgcatgtc ggtttcaaat tctacgccgt
     3061 caaaaacgaa gaattcaggc tcggggccga aataggcggt gtcgccgatg ccggaagatt
     3121 tcaaataggc ttcggcgcgg cgggcgatgg agcgcgggtc gcggtcgtaa ccctgaccgt
     3181 cggcagggtc gatgacgtcg caggtaatga cgacggtaac atcatcataa aaaggatcga
     3241 cgaaggctgt agacgcatcg ggacgcagct gcatatcgga agcctgaatg cctttccagc
     3301 cgccgataga cgaaccgtca aacgcctgac cgttttcgaa ccactcttcg gggtcttcca
     3361 acacgatgcg cgcaggcacg gtaaagtggt gctgcttgcc tttggtatcg gtaaagcgca
     3421 aatcgacaaa gcgggcttcg ctttcttcaa tcaattttac ggcgttttta atagacattt
     3481 ttcagctcct ggaaaaggga aatagcaaaa tatgcggaac gcggcggctt gacgcaaagt
     3541 cggcatgatt ctaccacgtc catgccgtct gaaactcgcc ctgcgtcaaa tttcaagctg
     3601 gaaaatatag tttcagacgg caagattgtc aacaatatgg ataaaattgc atatcatgtc
     3661 cggatttctc cccagcttat acagggaaaa accgtaccgc ctgacaaccg tttcagacgg
     3721 catcgtttcc atctgtacgc cgccgttata aaatagcctt cccgtctttt ggaacacgac
     3781 catgaccgcc ctcccccgtt actccgtttt cggcaacccc gttgcacaca gtaaatctcc
     3841 gcagattcat cggcaatttg cccttcagga aggcgttgac atcgaatacg gacgcatttg
     3901 cgccgacatc ggcggtttcg ctcaggcggt ttcgacattt tttgaaacag gcggttgcgg
     3961 ggcaaacgtt accgtaccgt tcaaacagga agcgtttcat ctggcggacg aacattccga
     4021 ccgcgctttg gcagcaggtg cggtcaatac gctgattctg ttgaaaaacg gcaagctgcg
     4081 cggcgacaat actgacggta tcggtttggc caacgacatc acgcaggtta aaaacattgc
     4141 catcgagggc aaaactattt tacttttggg cgcgggcggt gcggtgcgcg gcgtgattcc
     4201 tgttttgaaa gaacaccgtc ctgcccgtat cgtcattgcc aaccgtaccc atgccaaagc
     4261 cgaggaattg gcgcagcttt tcggcattga agccgtcccg atggcggatg tgaacggcgg
     4321 ttttgatatc atcatcaacg gcacatccgg cggtttgagc ggtcagcttc cggccgtcaa
     4381 tcctgaaatt ttccgcgact gccgccttgc ctacgatatg gtgtacggcg aagcggcaaa
     4441 accgtttttg gattttgccc ggcaatcggg cgcgaaacaa accgccgacg gactgggtat
     4501 gctggtcggt caggcggcgg cttcctacgc cctctggcgc ggatttacgc ccaatatccg
     4561 ccctgttatc gaatacatga aagccatgta atatgttccg catcgtcaaa tggctgattg
     4621 ccctgcccgt cggcatcttt atctttttca atgcctatgt gtacggcaac atcatcacct
     4681 accgcgccgt cgcgccgcat cggactgcct ttatgtcgat gcggatgaag cagtttgaac
     4741 aggaaggtcg cgatgtcgca ctggattacc gctgggtacc ctacaaccgc atctcggtca
     4801 acctgaaaaa agccctgatt gcttccgaag atgcccgttt cgccggacac ggcggcttcg
     4861 attggggcgg cattcaaaac gccatcaggc gcaaccggaa cagcggcaaa gtgaaggcgg
     4921 gcggttcgac catcagccag cagcttgcca aaaacctgtt tttaaacgaa agccgcagct
     4981 atatccgcaa aggcgaagaa gcggcgatta ccgcgatgat ggaagctgtt accgacaaag
     5041 acaggatttt tgaactgtat ttaaactcaa tcgagtggca ctacggtatt ttcggcgcgg
     5101 aagccgcgtc ccggtatttt tatcaaatac ccgccgccaa actgagcaaa cagcaggcgg
     5161 cgaaactgac ggcgcgcgtc cccgccccgc tctactacgc cgaccatccg aaaagcaaac
     5221 ggctgcgcaa caaaaccaat atcgtgctca gacgcatggg ttcggcagaa ttgcctgaaa
     5281 gcgacacgga ctgattgttt cagatatgga aatgccgtct gaactgcggt tcggacggca
     5341 tatgttttct ggtttttata gtggattaac aaaaatcagg acaaggcgac gaagccgcag
     5401 acagtacaaa tagcacggaa tcgattcact tggtgcttca gcaccttaga gaatcgttct
     5461 ctttgagcta aggcgagcca acgctgtacc ggtttaaatt taatccacta tacctgcccg
     5521 acagccgcaa agaccgtatc atacatagca ggcattgcgg tgcgggatta ctgccgcaaa
     5581 cggcaggcaa aaaaaataac cgcttcaagg cggttttttg gtggccagag gcggaatcga
     5641 accgccgaca cacggatttt caatccgttg ctctaccaac tgagctatct agcctttatc
     5701 tgtcttgtta agagatgcgt attaaaccaa atttcgggac aacacgcaag cggatttgtc
     5761 gatatttttt atccaaccga ctaagtcgat gttttaagtt taaattaatt tcacagaaaa
     5821 atagtgcaaa tcggtttttt gccgtttgtt cggcgatatt ctgcttttca gacggcaaaa
     5881 cgcttcaata tttgaagttc ttacccagat aaacagaacg aacctgttcg tttccgacca
     5941 aatcatcagg ttttcccgat gccagcaccg caccgtctga aatgatgtag gcgcggtcgc
     6001 agatgctgag ggtttcgcgg acgttgtggt cggtaatcag tacgccgatg ccgcgcgatt
     6061 tgaggaaacc gatgattttc tggatgtcga tgacggcaat cggatcgacg ccggcaaaag
     6121 gttcgtccaa caaaataaaa tgcggtttca tggcgagtac gcgggcgatt tcgacgcgtc
     6181 ggcgttcgcc gccggacagc gacggcgcgg ggctgcggcg caagtgtccg atattaaggt
     6241 cggcgagcag tttttcgatt tccctgtcga tttgattttt atctttggtt ctgatttcca
     6301 agatggcgcg gatgttttgt tcgacggtca ttttgcggaa tatcgaggct tcctgcggca
     6361 ggtagccgac accgaggcgg gcgcgttcgt gtatgggcag gtgacgcaat tcctgcccgt
     6421 ccagcatcac gctgcccgca tcggcggcaa tgagtccgac tatcatgtag aagctggtgg
     6481 ttttacccgc accgttgggc ccgagcagtc cgatgacttc gccgctttcg atttcgaggg
     6541 agaagctttt aacgacttgg cgttttttaa aacttttttg caggttttga acaacaaggc
     6601 ggctgacgtt tgcgctcata aatatctctt caatatcttc ggtcggcata tgccgtccga
     6661 accgggttta tgtttcagac ggcattttgg gattattcgg atttttgcgt actcgaaggc
     6721 tggataacga cgctgaccct gccggatttg gaagcggatt ttgcgccgga ttttgtgctg
     6781 ccgctgatgg tatagacttc ggttttggtg ttgtatgtaa tcaccgcacc ttcggcgaca
     6841 tcgccgccgc gctgtacttt ggcattaccg gttaagacta cggtgctgcc tgcagatgaa
     6901 taagcaacgt tgtttgcctg tccgcgcacc gtgcctttgc cgccgtccaa tgtctggctg
     6961 aagcggactg gcgaaccttc cgccctcacg gattcgccgc ctttgccgcc gcgtgtaaca
     7021 ttgacgcggg cggcggaaat attgagcgta ccctgtctga tgacgacgtt tccgctgaat
     7081 gtggtgcttt ggttggcttg atcgagcgaa ccttggtcgg cctcaatctg aataggctgc
     7141 ctgctgtcgc tttgaagggc aaaagcgggg gacgccgaaa aaaatgctat taaaacaaat
     7201 agcttacata tcttttgtat cataaatcgt ggctttcact ttagatgaga agttcaacat
     7261 gcctgttttg tggtcgtaag tcatgccgcc cgcctgaccg tgcgatgcac catattggaa
     7321 actgacaggc gtatcggttt gggcatattg agattcggta tcgacgtgca gcttttcggc
     7381 ttcaacttta cccgcctgcc gtttgccgtc ggcggttttg gtcagcacaa cgttgttttt
     7441 aaaaagaacc tgtttgtttt cggtatggta aacggcttcg tcgctgccga cttcgtacaa
     7501 caacctgcct tcttggaaga acacgagatg cggcgaatca aaatggatgt cgctgctttc
     7561 gggaaactgt ttcgcgcctt tcgcgctcaa atgttctttt aagtatccct gttcgtcaaa
     7621 ccgcctgcca tccaatccgt ccattgtgta ttgcggttcg tcgggattga gcctgacttc
     7681 ttcaatctcg acttcgctga tgcgtcccaa ccatgccgac aggctgccca aggcaaccgc
     7741 caatatcaat gggaacgcaa ttccgtaccg ccatcttatt ttcatttgat gtactcgttc
     7801 aaagccgcgc ccaaagtccc ttgcgcctgc ataatcaggt cgcacacttc gcgcaccgcg
     7861 cccgcaccgc cggggcgttt ggcaatatag gcggcgtgtt gcagcgtaaa ccaatgcgcg
     7921 tcggggacgg caaccggcaa tccgcaacgc accatcaccg gcaaatcgac cacgtcgtcg
     7981 ccgacaaagg cacactcggc ttcttccacg ccgacctgag cgcgcagctc ttcatacgcg
     8041 gcgcgtttgt ccgaaatgcc tttgaagtag taatttatgc ccaactgttt gacgcggatg
     8101 ccgacggagg gcgcgtcccg acctgtgata atcgcagtct gcacgccgct tgcctgaagc
     8161 attttcagac cgtgtccgtc cagtgtgtga aacgatttga tttcttcgcc gttatcgcgg
     8221 ataaagatgc gcccgtcggt caaaacgccg tccacatcca ggatcagcag tttgattttg
     8281 gcggcgcgcg cctgtaattc gggagaaatt gcctgcatgg gatttccttg ttttcagacg
     8341 gcatatctta ccacaaatgc cgtctgaaac ggctgcaacg ccttatacaa tccgcgccgc
     8401 caaaaggtcg tgcatattca gcgcaccgat cagcacgccg tctgcatcgg taaccagaag
     8461 cccgttcaca tggtttgcct gcatgacttt cagggcttcg gtggcgaggc gttcggcggc
     8521 gatggtttta gggtgtgtat gcatgacttc gtctatcgaa agaccggtaa aattgtcgca
     8581 ttcttgaaac aggcggcgca aatcgccgtc ggtgaatacg cctttcagac ggccttgccc
     8641 gtccgttacc gccagcatcc ccagcccttt ttcactcatg ctgacgatgg cttctttcaa
     8701 gggcgtgccg agtcggacgg caggcaggcc gccgcctttg tgcataatgt cggcaacgcg
     8761 caaaagtagg cgtttgccga ggctgccggc aggatggctc aaggcgaaat cgtcgggcgt
     8821 gaacgcgcgt gcgcgcagca ggacgaccgc caacgcatcg cccaaagcca tgacggcggt
     8881 ggtgctggtg gtcggggcaa gccccagcgg gcaggcttct ttggaaaccg acgccgtgat
     8941 gtggatgtcg gcatggcgcg ccatggttga atcggggcgg gcggtgatgc agacaagcgt
     9001 gatgtctttg cgtttgagcg cggggatgat ggcggcgatt tcgtcgcttt cgccggaatt
     9061 ggaaatcgcg acgaccacgt cgttgtccac aatcatgccc aaatcgccgt gtgccgcttc
     9121 cgcagggtgg acgaaaaacg cgggcgtgcc ggtcgaggcc atggttgccg ccattttgcg
     9181 cccgatatgt cccgacttgc ccatgcccgt gataacaacc ctgcccttgc agtgcaacaa
     9241 cgcgtctgcc gcaaggacga agttttcgtc caattccgct gcaatttcgc gcaagccttc
     9301 cgcttcggtg tgcaacactt cgcgcgccca gtcgagatat tttccgtttt ctgccattgc
     9361 catccgcctt tgctgtaaca aaactaccca aaatttccga atcggggtag cataagcatt
     9421 caaaccccgc catccatcca aaggaatcag aaatgactat tttatcggac gttaaagcat
     9481 taggacaaca aatctggctg gacaaccttt cccgctcgct cgtgcaaagc ggcgaattgg
     9541 cgcaaatgct gaaacaaggc gtgtgcggcg taacttccaa tcccgccatc ttccaaaaag
     9601 ccttcgccgg cgacgcgctt tacgccgatg aaatcgccgc cctcaagcag caaaacctca
     9661 gccccaaaca acgctacgaa accatggcgg ttgccgatgt gcgtgccgcc tgcggcgttt
     9721 gccttgccga acacgaatcc accggcggca aaaccggttt cgtcagcctc gaagtttcgc
     9781 ccgaattgtc caaagacgcg caaggcacgg tagaagaagc gcgccgcctc tacgccgcca
     9841 tcgggtgcaa aaacgcgatg attaaagtgc ctgccaccga cgcaggcatc gatgcgctcg
     9901 aaatcctcgt ttcagacggc atcagcgtaa acctcacgct gctgttctca cgcgcccaaa
     9961 ccctcaaagc ctacgccgcc tacgcgcgcg gcattgccaa acgcttggca gccggacaaa
    10021 gcgttgccca tatccacgtc gtcgccagct tcttcatctc ccgtgtggac ggcgcgctgg
    10081 acacaacgct gcccgaccac ctcaaaggca aaatcgccat cgcccttgcc aaagccgcct
    10141 atcaagattg ggaacaatat ttcaccaccc ccgaatttgc cgcactggaa gcccaaggcg
    10201 caaaccgcgt gcagctttta tgggcatcta ccggcgtgaa aaacccagcc tatcccgaca
    10261 cgctctacgt tgacaacctg atcggcgcgc acaccgtcaa caccgttccc gatgccacgc
    10321 tcaaagcctt tatcgaccac ggcacagcca aagccacgct gaccgaaggc gtagaagaag
    10381 cacaagcgca gcttgccgaa accgccgcgc tcggcataga cgtagaaacc ctcgccaacc
    10441 gcttgcagga agacggtttg aaacaatttg aagaagcgtt tgaaaaactg ctcgcaccgt
    10501 tggtttaaac ttttcatccc cgatgccgtc tgaaaggctt tcagacggca tcgccctttt
    10561 gaccggacac agtgcggcat atcaaggatt cgccctaaaa atattaatca acaagaagtt
    10621 aatgcacgac attacccact aacacaaaag gaaatagaat catggcaaaa gcactcgaaa
    10681 tcatttcacc caatgaaatt tattcagatc tgatttttaa ggatccggta cctccccata
    10741 ctatatatag agaattgatg aaactggtta gtagaaatgc aagtaatgag agaatcgcag
    10801 atagagcctt cgattttttc tcgtccggcc ttatggatgg ttcagctacc gaagagcaat
    10861 ataatgccct atatgattta accttgcttg aagagcccgg gatggaactg aataaagatg
    10921 agataatggc tttgattaat agtcttaaat aaaggggctg taccagatat gtacacagga
    10981 cgttttgccc ccagcccgac cgggctgctc cacatcggct cgctgctgac cgccgtcgct
    11041 tcctatgccg atgcacgctc aaacggcggc aaatggctgg tccgcatgga agacctcgat
    11101 ccgccgcgcg aaatgccggg ggcggcaagc catatcctgc acacgcttga ggcattcgga
    11161 ttcgagtggg acggagaagt cgcctatcag agccgccgtt acgccctgta tgaagaaaca
    11221 ctatgccgcc tgaaaaccgc cggactggtc tatccctgcc attgcagccg caaagactgg
    11281 cagaccgggg caaggcgggg cgcagacggg ttcgtctata acggacgctg ccgcaatccg
    11341 cagcaacgcc ctgcactgca aggcaaacag ccggcgtggc gcatccgcgt ccccgaccgc
    11401 gacatcggct tttcagacgg catcgtcggc ggttacgccc aaaacctcgc ccgcgacatc
    11461 ggcgatttcg tcctgcttcg tgcagacggt tactgggcat accaactcgc cgtcgttgcc
    11521 gacgatgccg aacagggcgt tacccacatc gtccgcggac aagacctgct tgtttctacg
    11581 ccgcgccaaa tctatttgca gcagtgtttg gacgttccga caccgcaata tgcccacctg
    11641 ccgctgctga ccaacgcaca agggcagaaa tggtcgaaac agacgctcgc acccgcattg
    11701 gatttaaacc gccgcgaaca actcctccgc caagtgttcc gttacctcaa cctgcccgaa
    11761 gcaccggaag ccgaccgccc tgccgaactg ctcgactggg cggtggcaca ctgggatatg
    11821 ggcaaagtgc cgaaacacgc cattaccgcc ccctaaacac cgcccgacaa acgcacaaat
    11881 gccgtctgaa accttcagac ggcatttcat acacacagcc ccgccctatt cgcgcatatt
    11941 tgcccgttcg acttctttcc acgcttcgag aatcaggccg ccgtcgttgt ctttcaagag
    12001 cgttgcatcg gaaagcatac gccgccaagt gcgggcattt ttcagaccgt gcatcagccc
    12061 gaggctgtgg cggacgatgt ggcgcaagat tgtgccgcgt ccggcttgga tttgggcttg
    12121 actgtatgtg tagagacgct gcaccaaatc ggcgtattca atcgggctgc gggtatcgcc
    12181 gtaaaacagc ctgtcccatt cgcgcatcac catcgggttg tggtacgcct cgcgcccgac
    12241 catcacgccg tcaacgtgtt gcaggtgttg cgcgatttcc tcattggtcg tgatgccgcc
    12301 gttgatgatg atttccagcc cgggaaactc ttgcttgagg cggtaaacat aatcgtattt
    12361 caagggcgga acgtcgcggt tttctttggg tgaaagaccg tccagccacg cgttacgtgc
    12421 gtggacgata aaggttttgc aggcggtttt gtcgcgcagc gtgccgacga aatcggcaac
    12481 ggtttggtat tcggtctgcc tgtccacacc gatgcggtgt ttgacggtaa cgggaatctt
    12541 gaccgcatcc tgcatggcgt tgaggcagtc ggcaaccagc ccgacttcgt tcatcagaca
    12601 cgcgccgaac gcgcctttct ggacgcgcgg actggggcag ccgcagttga ggttgacctc
    12661 gttgtagccg tattcttcgg cggctttggc ggctttcgcc aaatcggacg ggtcgctgcc
    12721 gcccagttgc agggcgacgg gctgctcgcc ttcgttaaac atcaaaaagc ggtctttgtc
    12781 gccgtaaaca atcgcgccgg cgttgaccat ttcgctgtac agccaagtat tgcgggtaat
    12841 ctggcgcgcc atataacggt agtgcctgtc cgtccagtcc aacatcgggg cgacggacag
    12901 gcggcgggga ggaagggttt gcgtgttgtc gttcattgtc gatatttcac cattgcggat
    12961 tcaatttcaa tccggaacaa ccttcatttt tggggaaatc cgcgtcatga aagagtccag
    13021 cagtatggtt accggcccgt cgttgcagag cgacacctgc atatgcgtgc ggaaacgccc
    13081 tgtttcgaca tgaattccgt gtccgcgcaa cagttccgcc gttcgcaggt aaagctgctg
    13141 cgcctgttct gcaggtgcgg cttgcgaaaa cgaaggccgc cgcccgcttg tcgcgtcggc
    13201 ataaagcgta aactgcgaca ccagcagcac cgcgccgccg acatctttca aagacaggtt
    13261 cagcttgccc gcttcgtctt caaacacgcg caaatgggcg attttgtcgg cgatatagcg
    13321 cgcatctttt tctgtgtcac tatgcgttac gccgagcagc acgacgaatc cgccgtcgat
    13381 tttgccacag gtttccgtgc cgttttcgga cacgacatcc acctttgcac ctaccgtttt
    13441 ctgtatgacc gcacgcataa gccgtcctcc ttacctgaac gtgcaatgcc gtctgaaaag
    13501 gcttcagacg gcatcggtat tggaaatgcc attacggttt gacaccgttt tcttccaaaa
    13561 tggcatcgat tttcaagcgg gctttttcct gtctcaaacc ttgttccaac tggtttctga
    13621 ccaactcgaa aggctgcgcg tcggggtttt tcccgacctc gctgagtttg aacagataat
    13681 agcgttcgcc caatttgacc ggatcgcggg taacgtcgcc ccgattcatc gcggcaaact
    13741 gcgaagccag cggctcggga agctgctgcg ccataatgaa accgtcaaaa gcctgctcgt
    13801 cgttcggata acgcttcatc agcccttcaa aagacagccc tttgagcagg agctgctgcg
    13861 cctgacgcgc ctcctcttcg gttgcgaagc tgacctgctg caatttgatc atgcggattt
    13921 gccgctcata aaactgacgc agtgcgcttt cggaaaccgt ttccgaacgt tccagaaaac
    13981 ggacgtactc ctcggcataa aaagacgctt cggcgatttt aaagcggttt tggacatcct
    14041 tatccttatc caaaccttcc ttcaatgccc tgtttttcaa aacttccaaa gtttgcagcc
    14101 gacggacggc atcgtttcgg attgcctgcc cgtccggttt ttgggactgc tccgcatgcc
    14161 ggtctgcctg ctgcatgatc tgcgccacca gcgtatccac caaagccggg tcgatttcgg
    14221 gtgctttggc tgccgcaaaa cctgccaaca ttgcagcaat aactgcggca gcggtttttt
    14281 tctgtttcat ggtattccct gtcctgcgcg gcggcaaaac gcctgtctga acgtcttgcc
    14341 gccatatccc gttttcagaa ttattttgca ggtttgatgt ttgccttgcc caacagtgca
    14401 ccgacggcac ggtcaatccg ttccgcctga aggttgccgg caatctgtcc tttcatttca
    14461 tcaaaagaag gcacttttac ctcgcggctg tcgttgacat aataaacgcc gtagaaatcg
    14521 ccgtttttca gcggcgttgc cgtaaattcg ccttttttca agtccttaat tgcctgataa
    14581 agcggcggaa caccctgttc caaatctttc agcggcacat atccgaccgg cgcaccggtc
    14641 tgtttggtac ggtcgttgag ggaatattgt ttcaagacgg catcgaaacc ttttttcgcc
    14701 ttcaagtcgg caaccgcttt ttttgcattt tcttccttgt cggtcaggat ttcgcccaac
    14761 tggacttcct gcgtaccttt gtaaaaaccg ctgatattgt catatgcggc ttttatttcc
    14821 tgctcggaaa ccggttgggt tttggcgata tgcagcgcgt atgcctcgcc gttcaagcca
    14881 tattttaccg cctgccaaac ggttttgaag gacggtttct tgtcgtcgcc cgactttttc
    14941 gcttcggcac gcaatttggc aagcgcattt ttaaactctg ccgaccggtc gagtttcagg
    15001 cgtttcactt cctgtgcgac cacggtgttg accacttcgt tttccagcag ggattggcgc
    15061 agttgcggcg tgtcttcggc acggctgttt tccgcacgga atgcggcaac ctgcgcatcg
    15121 atgacggaac tgtcgatttt ctgaccgttg acggttgcca gcgtttgggc aaacaggctg
    15181 ccggaacagg caagcagtgc aacggaagtc aggatttttg ctttcataat cttctctctt
    15241 taaattttaa attgaaatgt tcgggcagac ttcattcagt ccgccgtatg gaaatactcg
    15301 tcaggggtag ccgcccggat gccgagcgcg tgaatcatgc cgcctgaaaa caaatctttg
    15361 agcagcgatt tgaccgtttt ctggcggttc aggcggctta cgccttcaaa acggccgcta
    15421 acgaccaaaa cggcataatg tccgccgccg gtattgcccg cgtgtccttt gtgcagatgg
    15481 ctctcatcgc cgatttccaa caccagcgga tcgagcgtct gcaggcgttc gcggatcaaa
    15541 tcgacggccg gcattatttg aacaccgctt taaacggctt gatcagcact tcgctgtaca
    15601 cgcctgcatg aacataggga tcgtcttccg cccacgcctc tgccgcatcc aaagactcga
    15661 actgcgccac aatcaaactg cccgaaacgc ggttggagtc ctccggcaaa ggattcgggc
    15721 ctgccgtcaa cagccggcct tccgacttca gcgtctccag ccgtttgagg tgttcgggac
    15781 gtgccgccat acgcgcttca tacacattct ccccgtctgt tgccagcaac ataaaatatt
    15841 ccacagtcaa tcctcctttt tcagacaggt actcagataa ataccctgaa taataaagaa
    15901 aacaagcatc agtgcagtcg agccgaacat tttatagttg acccattgcg actcgaaccg
    15961 ggtaaacaca aaccagttgg cgatacccat aaaaatcagg aaaccgaccc acatatacgt
    16021 caatttcgcc catacggcat ccggaagctg aatctccctg ccgatactcg ccttcaagcc
    16081 gtttttaccg gcgaggtggc tgccccacag gaacagcgcg cccagccaaa acaaaacgct
    16141 cggcttccac ataatgaagc ggctgtcgcc caaaacaatg gttgcgccgc cgaatacgac
    16201 aatcagcacc agtccgaccc actgcatcgt atccagcttt ttatatttcc aatacagaaa
    16261 agccgcctga accacaccgg caaccaaggc aaccgccgtt gcggtaatca tgtttttggt
    16321 aacggtataa gtggcgaaaa acaggatgac ggaaaaaagg tcgctgacaa atttcatatc
    16381 caaatgagaa agcaaatcaa ataaacgcta atcatacagg cagaaccctg tttttgcacc
    16441 tgcaaaaccg acaaatttta tttcggacga tgcaaatatg cacagatgtt tttgaaaaaa
    16501 gatgaagata tgacataatt tgtaaaattg gctttaaaat acagcttcgg ccgggacctc
    16561 tgcctatccg caccctatcg tccgtattgc cgatgcctga tgacgaaatt tacagactgt
    16621 acgcggtcaa accgtattca gccgccaacc cacaggggat acatcttgaa aaacaacaga
    16681 caaatcaaac tgattgccgc ctccgtcgca cttgccgcat cctttcaggc acatgcggga
    16741 ctgggcggac tgaatatccg gtccaacctt gacgaaccct tttccggcag cattaccgta
    16801 accggcgaag aagccaaagc cctgctaggc ggcggcagcg ttaccgtttc cgaaaaaggc
    16861 ctgaccgcca aagtccacaa gttgggcgac aaagccgtca ttgccgtttc ttccgcacag
    16921 gcagtccgcg atcccgtcct ggtgttccgc atcggtgcag gcgcgcaggt acgcgaatac
    16981 accgccatcc tcgatcctgt cggctactcg cccaaaacca aatctgcact ttcagacggc
    17041 aagacacacc gcaaaaccgc tccgacagca gagtcccaag aaaatcaaaa cgccaaagcc
    17101 ctccgcaaaa ccgataaaaa agacagcgcg aacgcagccg tcaaaccggc gcataacggc
    17161 aaaacccata ccgtccgcaa aggcgaaacg cttaaacaga ttgccgccgc catccgtccg
    17221 aaacacctga cgctcgaaca ggttgccgat gcgctgctga aggcaaaccc aaatgtttcc
    17281 gcacacggca gactgcgtgc gggcagcgtg cttcacattc cgaatctgaa caggatcaaa
    17341 gcggaacaac ccaaaccgca aacggcgaaa cccaaagccg aaaccgcatc catgccgtcc
    17401 gaaccgtcca aacaggcaac ggtagagaaa ccggttgaaa aacctgaagc aaaagttgcc
    17461 gcgcccgaag caaaagcgga aaaaccggcc gttcgacccg aacctgtacc cgctgcaaat
    17521 actgccgcat cggaaaccgc tgccgaatcc gccccccaag aagccgccgc ttctgccatc
    17581 gacacgccga ccgacgaaac cggtaacgcc gtttccgaac ctgtcgaaca ggtttctgcc
    17641 gaagaagaaa ccgaaagcgg actgtttgac ggtctgttcg gcggttcgta caccttgctg
    17701 cttgccggcg gaggcgcggc attaatcgcc ctgctgctgc ttttgcgcct tgcccaatcc
    17761 aaacgcgcgc gccgtaccga agaatccgtc cctgaggaag agcctgacct tgacgacgcg
    17821 gcagacgacg gcatagaaat cacctttgcc gaagtcgaaa ctccggcaac gcccgaaccc
    17881 gctccgaaaa acgatgtaaa cgacacactt gccttagatg gggaatctga agaagagtta
    17941 tcggcaaaac aaacgttcga tgtcgaaacc gatacgcctt ccaaccgcat cgacttggat
    18001 ttcgacagcc tggcagccgc gcaaaacggc attttatccg gcgcacttac gcaggatgaa
    18061 gaaacccaaa aacgcgcgga tgccgattgg aacgccatcg aatccacaga cagcgtgtac
    18121 gagcccgaga ccttcaaccc gtacaaccct gtcgaaatcg tcatcgacac gcccgaaccg
    18181 gaatctgtcg cccaaactgc cgaaaacaaa ccggaaaccg tcgataccga tttctccgac
    18241 aacctgccct caaacaacca tatcggcaca gaagaaacag cttccgcaaa acctgcctca
    18301 ccctccggac tggcaggctt cctgaaggct tcctcgcccg aaaccatctt ggaaaaaaca
    18361 gttgccgaag tccaaacacc ggaagagttg cacgatttcc tgaaagtgta cgaaaccgat
    18421 gccgcagacg atttgtccgc attgcttcaa cctgccgaag cactgtccgt tgaggaaaat
    18481 ataacggaaa ccgttgccga aacacccgac ttcaacgcca ccgcagacga tttgtccgca
    18541 ttacttcaac cttctgaagt acctgccgtt gaggaaaatg cagcggaaac cgttgccgat
    18601 gatttgtccg cactgttgca acctgctgaa gcaccggccg ttgaggaaaa tgtaacggaa
    18661 accgttgccg aaacacccga tttcaacgcc accgcagacg atttgtccgc attacttcaa
    18721 cctgctgaag tacctgccgt tgaggaaaat gcagcggaaa tcactttgga aacgcctgat
    18781 tccaacacct ctgaggcaga cgctttgccc gacttcctga aagacggcga ggaggaaacg
    18841 gtagattgga gcatctacct ctcggaagaa aatatcccaa ataatgcaga taccagtttc
    18901 ccttcggaat ctgtaggttc tgacgcgcct tccgaagcga aatacgacct tgccgaaatg
    18961 tatctcgaaa tcggcgaccg cgatgccgct gccgagacag tgcagaaatt gctggaagaa
    19021 gcggaaggcg acgtactcaa acgtgcccaa gcattggcgc aggaattggg tatttgattc
    19081 ccaactgccc tttcgcagat caaggatgcc gtttcagacg gcatcttttt ttgccttatc
    19141 ggtgtaacgg ataaagtttg aaccggcaca ggctcaaaca gcaggtcgac ggcaacaaaa
    19201 tgccgtctga aacccctaaa ggcttcagac ggcattggcg gcggcggtat caggcagttt
    19261 gataggcaac cgaatcgtca ccgcttttct tttgaatgaa ttcgattttg tatccgtcgg
    19321 ggtcttcgac gaaggctatc acggttgtgc cgtgtttcat cgggccggct tcgcggacga
    19381 cgtttccgcc ctgccgcttc acacgttcgc aggcttcgta ggcatcatcc acttcaaccg
    19441 cgatgtgtcc gtaggcgttg cccaagtcgt atcgttccgt atcccagttg tgcgtcagtt
    19501 ccaaaaccgt gctgtcggtt tcatcgccgt aaccgacgaa ggcaagggta aatctgcctt
    19561 cgggataatc ttttcggcgg agcagtttca tacccaaaac gttttggtag aaatcgaggg
    19621 atttttcgag attgcccacg cggagcatag tatggagtaa gcgcattttt tgtgttcctt
    19681 tcggtggtgg ttaaacttcg attttattcg gggtaaacgt ctgccatttg ttgcaggcgg
    19741 ggcagtgcca gaaaaagact tgggatttga agtggcagtt gcggcaacgg tacatcacgc
    19801 tgcgctgtag ctgccgtccg ataaccgaac gcatcatgtc ggcatcggct ttccaagccg
    19861 gattcatatc gctgagtttc aaaccgagca ggcggtacac gccgttaagg tcgggcttgc
    19921 ggcggacaag ctcgacggcg gtttgcgcgg cttctttctc gcccttaagc agcagggatt
    19981 tctcgtacac gacattgatc aggtcaagtt cgggaaacgt ctgcatatat cctgtcagac
    20041 ggttcaagcc ttcttcaggt tttccctgcg cggcataggc ttcgtaaagc ttctcgccga
    20101 ccatgctcaa gtatgcatgg ttttgctgct cgatggcggc ataggcttcg acggcggcag
    20161 ggaaattgcc ttgtcggtgt tcgatgtcgc ccaaaatcat gttggcgcgg gtgcattttt
    20221 tgttggcttc gagtgccttg ccgacattga aacgcgcggc atcgaaattg gacttgaaca
    20281 gcgcggcttg ggcaagttcg caatagaact gtgcaatctc aaactgatag gtctgctcgt
    20341 catggctgag cagccgggcg gtttcaaccg ctttttccca atccctgtcc tgttggtaga
    20401 tattgagcag gtgctgtctg gcttcacgcg ccatttcacc gtcttgcagc cccaaaaaaa
    20461 tctgttcggc acggtcaacc aaccccgcac tttgatagtt ttgcgccaat tcaaataata
    20521 cgcgcgcacg cttggctccg gttgtatcgg gagagtcaag caatgtttgg tgcatattga
    20581 tggctttgtc gttttcgcca cgctgacggt aaagcttgcc tagggtgagg ttcaggtcgt
    20641 atgactgagg ctgctgatcg atgacctctg ccaattccct ggcggcacgt ccgctgttgc
    20701 ggtcaaccaa ggcatccaga cttttataaa atcccgacgg tatgcttttt gcctgcttta
    20761 atacagtctt catatccacg cgggcggcaa accagcccat cgcgaagaaa acgggcaaaa
    20821 ggataatcgg cagcaggata atccacaatt cattgtccat atcggctttc tcaaggctgt
    20881 ttggcagatt cgggcgcatt ttgcgccggt ggtgcggtca gctccttccc cgtcaaacgc
    20941 gcatttttct ttacttcggc acgcaacctg ccgttctcgc cacgtaacga caacaaccgt
    21001 ccgaacaagg caaacattcc aaaaacaata ccgactacaa atgcgccgaa caatacgaca
    21061 atcagcggca aatcgaattt ttgccccggc aggtaggaaa aggtaacggc atccgtatta
    21121 atgacagcaa gcagcaggaa gagcagcagg ataatgattt tgatgacggt atagataagt
    21181 ttcatgtttg ctccgtaaat aaaaacgccg cccggacagc ttcgcactct gaaccaagat
    21241 tgcgctagtt taaacgattt gcacggtttc ggataggatg cggcagcgtg ttcggacgac
    21301 atacggagta tgcgattgcc gacaatttta ccaaatacac cgttcctttc catttgaaaa
    21361 ataacggatt ggacaccgca tcgacagaaa aacccgccgc gcacttgtca aaaccctgtt
    21421 tgcaggcgta tctttacaat cttcaaattc aaaccgttca ttgaaacata tcagaataag
    21481 aaaggctttt catcatgagc agacccgtac ccgccgtatt cggcagcgtt tttcacagtc
    21541 aaatgcccgt cctcgcctac cgcgaaggca aatggcagcc gaccgaatgg caatcttccc
    21601 aagacctctc cctcgcaccg ggtgcgcacg ccctgcacta cagcagcgaa tgtttcgagg
    21661 gactgaaagc cttccgtcag gcagacggca aaatcgtact gttccgtccg actgccaaca
    21721 tcgcgcgtat gcggcaaagt gcggacattt tgcacctgcc gcgccccgaa acccaagcct
    21781 atctcgacgc gctaatcgaa ttggtcaaac gcgccgccga tgaaattccc gatgcgcctg
    21841 ccgccctgta cctgcgtccg accttaatcg gtaccgatcc cgttatcggc aaggccggtt
    21901 ctccttccga aaccgccctg ctgtatattt tggcttcccc cgtcggcgac tatttcaaag
    21961 tcggctcgcc cgtcaaaatt ttagtggaaa ccgaacacat ccgctgcgcc ccgcatatgg
    22021 gccgcgtcaa atgcggcggc aactacgctt ccgccatgca ctgggtgctg aaggcgaaag
    22081 ccgaatacgg cgcaaaccaa gtcctcttct gcccgaacgg cgacgtgcag gaaaccggcg
    22141 cgtccaactt tatcctgatt aacggcgatg aaatcattac caaaccgctg accgacgagt
    22201 ttttgcacgg cgtaacccgc gattccgtac tgacggttgc caaagatttg ggctataccg
    22261 tcagcgaacg taatttcacg gttgacgaac tgaaagctgc tgtggaaaac ggtgcggagg
    22321 cgattctgac cggtacggca gccgtcatct cgcccgttac ttccttcgtc atcggcggca
    22381 aagaaatcga agtgaaaagc caagaacgcg gctatgccat ccgtaaggcg attaccgaca
    22441 tccagtatgg tttggcggaa gacaaatacg gctggctggt cgaagtgtgc tgatgcttta
    22501 aataaaaaat gccgtctgaa acccgtttgg cgtttcagac ggcattttcg cgttcggacc
    22561 atttccgctg cacctgcagc aagtcgggca tttccctaga aatacgcttc agacggcaaa
    22621 ccgccgcccg aaaccgatac gcggcacgga cggcgcacgg atttgaaaac ggcggattat
    22681 ccctcggtgc tcaaggcatt gatgctgtaa ccgccgtcaa cgtaagtgat ttcgccggta
    22741 atgccggacg acaggtcgga cagcaggaag gcggcggcat tgccgacttc ttcgatggta
    22801 acgttgcggc gcagcggatt gtgggcggcg acgtgtccca agagtttgcc gaaatcggcg
    22861 atgccggagg cggcgagtgt tttgatcgga ccggcggaaa taccgttgca gcggatgcct
    22921 tctttgccca aacaggcggc ggtaaagcgg atgcctgcct caaggctggc ttttgccata
    22981 cccatcacgt tgtagttcgg aatcgcgcgc accgcgccca agtagctcag ggcgacgatg
    23041 gcggagtttc tgccgcgcat catcggacgg gcggcttttg ccagcgcagg taggctgtat
    23101 gcggaaattt cgtgtgcggt gttgaacgct tcgcggctga tgctgtcgag gaagtcgccg
    23161 ctcaaggctt ctttcggcgc aaaaccgatg gaatgcacca aaccgtccaa gccgtcccaa
    23221 tgtttgccca aatcggcgaa cacttggttg atttcgtcgt cgctggcgac atcgcagcgg
    23281 aacacgagtt cggaatccaa ttccgccgcc attttgcgga cgcgctcttc cagtttgtcc
    23341 acaacgtagg taaacgccag ttccgcgcct tgttcgcggc aggctttggc gatgccgtaa
    23401 gcgatggaac gctcggaaat catgccggta atcagaattt ttttgccttg cagaaaaccc
    23461 attttgtatc cttcaaatag tgttcggttc gttctaaacc gttgattata gcaaattgtc
    23521 cctgtttctg tgttttcacg ttgcagcatg caaacggcaa tgccgtccga agcggatttc
    23581 agacggcatc ggacgtttca aatacggttt aaggcatcag atgccgcgca acaattcgtt
    23641 cacactggtt ttcgcacggg tttgcgcgtc cacgcgtttg acgatgacgg cgcagtaaag
    23701 gctgtggctg ccgtctttgg aaggcatact gccggacacg acgaccgaac ctgccggtac
    23761 gcggccttgg tagatttcgc cggtggtgcg gtcgaagatt ttggtggatt gaccgatgaa
    23821 cacgcccatc gaaatcacgc tgccttcttc gacaatcacg ccctcaacga tttcagaacg
    23881 cgcaccgatg aagcagttgt cttcaatgat ggtgggggcg gcctgcaggg gttcgagtac
    23941 gccgccgata ccgacgccgc cactcaagtg cacgtttttg ccgatttgcg cgcaagagcc
    24001 gacagtcgcc caagtatcga ccatcgcgcc ttcgtcgacg tatgcgccga tgttgacgta
    24061 agacggcatc agcacgacat ttttcgccac aaagctgccg cgtcgggcaa ccgcacccgg
    24121 aacggcgcgg aagcctgcgt ttttgaactc gtcttcagac cagtcggcaa acttggtcgg
    24181 cactttgtcg aagtatttgt tcacgccgtc gttgaggact tcgttgtctt ggatgcggaa
    24241 ggacagcaac acggcttttt tcgcccattc gttgactttc cactcgccca cgcccaagca
    24301 ttcggcaacg cgcagtttgc ctgaatcgag ttggcggatg gtttccaaca cggcttcttt
    24361 aacttcggga gcaacagtgg acggggtgat gtccgcgcgg ttttcaaagg cggtttcgat
    24421 aatgttttgc aaagacataa tgtttcctta tgtgagatgt ttcgtgggac gcttgccggt
    24481 attttcaagc agtatgttca tttgaaatga atgcgctatt gtgccacgca aacgcatatt
    24541 cgtcagcaat acgcgggcgg ttgccgaaca ttggcgtttc ggaatcgggc gggcggcagg
    24601 tattgccttt tccgcacccg aatcaataca gaacggcggc ggtactttta tgccgcgccg
    24661 acgcctttca gacggcattc acggtaaaac gccatcagcc cttcggtcga ggcatcgtgt
    24721 acggacgtgc cgccttccag ttcgccgatg atggttttcg ccaactgttt gccgtactca
    24781 accccccact gatcgaaggg attgatgtcc caaattacac cctgcacaaa ggttttgtgt
    24841 tcgtaagccg ccatcagcat acccagattg tagggcgtga ggcggtcgag caggatgctg
    24901 ttactggggc ggttgccggg gaactctttg tgcggcgcga ggcgttcgcg ttccgcttcg
    24961 ggcaaatctg ccaattcggc gcgtgcttcg tccaaggttt tgcccttcat cagggcttcc
    25021 gcttgggcaa aggcgttggc aacggtaaaa cggctgcgtc cgtcctccac gccctgcgcc
    25081 gtcatcggga cgataaagtc gcagggaatc aggcgcgtgc cttgatgaag cagttggaaa
    25141 taggcgtgct ggcagttgac cccttcaccg ccgaacacga tgccgcccgt tttgcacacg
    25201 gcgggactgc cgtctgaagc gcggcttttg cccaaactct ccatatcgag ctggttcagc
    25261 cacaccggca gcaggcgcag gttgtggctg tacggaacgg cggtctgccc gtccgcgtgt
    25321 tggaaattgt tataccacac ggcaatcagt gccatcagaa cgggaatgtt gcggcgcggc
    25381 ggcgtgtgga aaaaatggct gtccatcgcg tgcgcccccg ccaacaactc gcggaaacgc
    25441 gccccgccga ccgcaaccat cacgggcaaa ccgacggacg accagacgga atagcgtccg
    25501 cccacccagt cgtacatcgc aaacacgcgt tccgccgcga taccgaaagc cgcagctgcc
    25561 gcagtgtcgg cagacaccgc gcaaaaatgg cacgccgttt cggattccga gaaccccgca
    25621 ccgcgatacc acgccttgac tgcctgtgca ttgagcaggg tttccggtgt tttgaaggac
    25681 ttgctggcaa cgcaaaacac tgtcgtttcg gggttcagac ggcataaaac cgcatccagg
    25741 caggcaggat cggcgttggc ggcaaaatgg acggcgatat gccgtctgaa cggctcgagt
    25801 gcctgaacgc acattgccgg cccgaggtcg gatccgccta tgccgatgtg gacaaaatcc
    25861 gtaatccgtt tcccagttat cccctgatac gaaccgtcgt ccaaactgtg tgcaaactcc
    25921 aacgcacgat ttaactcgcg gcggatttcg ggcaacacgt ccctgccgtc cacataaacg
    25981 gcatccgcac cgtcgggcag gcgcaaagcc gtatgcagcg cggcacgccc ctcgctgccg
    26041 ttgactttcg cacccgtccg caaagcacgc attttccctt ccaaatccgc cgtctccgca
    26101 agacggcaga gcagttgcag cgtatcttcg cccaaacggt ttttgctgta atcgaacaac
    26161 atcccgtcca aacgctcatg catacgctca aaacggtcgg gttcgcaggc aaagcggtcg
    26221 cgcaaaagga catgacgcgt atcctgataa tggcgttcga gcgcatacca tgcacgggta
    26281 aaagcattca tctgttttcc ttgatttttc agaaccggat taaaatgtag cagaatgtag
    26341 tttaacaaac ggcagcggct ttggcgaatc tccggaacac cgcccgccgc gtccaatagc
    26401 accttatttc catatggcga aaatatagtg aattaacaaa aatcaggaca aggcggcgag
    26461 ccgcagacag tacaaatagt atggaaccga ttcacttggt gcttcagcac cttagagaat
    26521 cgttctctct tgagctaagg cgagccaacg ctgtaccggt ttttgttaat tcactatacc
    26581 ctccggccga catttgaccc gcaacaatat cctgcaagat ttattgtgta cgcataaatg
    26641 ccggacagcc gcctaaataa ggtataatcg catccgattc tgtcccgttt gccgcccgca
    26701 ggcgggatgt cggcggtttt catcttaccg ggaacacgcc ggtactgttt tttaacgatg
    26761 tttcttacat tttattccaa ttactttacg gggctagaat atggctaaaa acggaggatt
    26821 ttctttgttc gcaaagaaag aaaaacgctt tatctttgaa ggcaggcatt ccgcctccga
    26881 caaactggtc aacggcgaag tatccgcgtt taccgaagaa gaggcgcgca aaaaactggc
    26941 aaaacgcggc atccgcccgt tgcagattac ccgtgtgaaa acaagctcca agcgcaaaat
    27001 cacacaagaa gacatcaccg ttttcacccg ccagctgtcc acgatgatta aagcgggcct
    27061 gccgctgatg caggcatttg aaatcgtggc gcgcggacac ggcaacccgt ctatgacgga
    27121 aatgctgatg gaaatccgag gcgaagtgga acagggcagc tcgttgagcc gcgcattctc
    27181 aaaccacccg aaatatttcg accgcttcta ctgcaacctg gttgcggcag gcgaaacggg
    27241 cggcgtattg gaaagcctgc tggacaaatt ggcaatttac aaagaaaaaa cccaggccat
    27301 ccgcaaaaag gtaaaaaccg cactgaccta tccggtatcc gtcatcgccg tcgccatcgg
    27361 tttggtattc gtgatgatga ttttcgtact gcccgccttt aaagaagttt acgccaatat
    27421 gggcgcggag cttcccgcac tgacccaaac agtgatggat atgtccgact ttttcgtctc
    27481 atacggctgg atggtgctga tcgcactggg ctttgccata tacggcttcc ttaaattgaa
    27541 ggcgcgttcg attaaaatcc aacggcgtat ggatgccata ctgctgcgta tgccgatttt
    27601 cggagacatt gtccgcaaag ggacgattgc ccgctggggc aggacgacag cgacgctgat
    27661 tgcggcaggc gtgcctttgg tcgatgtatt ggactccact gccggcgcgg cgggcaattt
    27721 aatctatgaa gaagccaccc gggaaatccg tacgcgcgtc atccaaggtt tgtctatgac
    27781 ttcggggatg cgtgcgacgg aactgttccc caatatgatg ttgcagatgt cttccatcgg
    27841 cgaggaatcg ggttctttgg acgatatgct caacaaagcc gccgaatttt acgaagacga
    27901 ggtggacaat gcggtcggca ggctgtccgc tatgatggag ccgatcatta tcgtgatttt
    27961 aggcttggtc atcggcacgc ttctggtcgc catgtatctg ccgctgttta atttgggcaa
    28021 cgtggtcgcc tgatttgccg cacagatccg gcgcggattc gctctgcgcc ggtttgtttt
    28081 tgttttgaat acattgagaa caaaatatgt ctgatttgtc tgtattgtcg ccgtttgccg
    28141 tgcctttggc agcggtgttc gggctgctgg tcggcagttt cttaaacgtc gtcatttacc
    28201 gcgtgccggt catgatggaa cgcggctgga cggtatttgc caaaaaacat ttaaacctgc
    28261 cgctgaccga aaaggaaagc cgtaccttca acctgatgaa accggattcc tgctgtccca
    28321 aatgccgcgt gccgatacgc gcgtggcaga acatcccgat tgtcagctac ctgctcctgc
    28381 gcggcaaatg cgcttcctgc caaaccaaaa tcagcatacg ttatccctta atcgagctgc
    28441 tgaccggcgt attattcggg ctggtcgcct ggcaatacgg ctggtcttgg attacattgg
    28501 gcggtttgat actgaccgcg tttctgattt ccctgacctt tatcgatgcg gacacccaat
    28561 acctgcccga ctcgatgaca ctgcccttga tttggctggg gctgatattt aatttggacg
    28621 gcggcttcgt gcctttgcag tctgccgttt taggtgcggt tgccggctat ggttcgatat
    28681 ggcttttatg cgcggtatat aaactgatta aaggcgaaat cggtatgggc aacggagatt
    28741 tcaaactgat tgccgcattg ggcgcgtggc tcggcatatc cgcattgccc gtgctgattt
    28801 ttgtttcctc gctgatcggt ttggtcgcgg caatcgttat gcgcgtcgcc aaggggcagc
    28861 attttgcctt cggccccgca ctgacagttt cgggctggat aatttttacg gcaaacgatt
    28921 ccgtatggcg ggcggtcaac tggtggctga cccatccggt gctgtaagat gacggtatgg
    28981 gtcgggctga ccggcggaat cggcagcggc aaatcggcag ccgcgcaatg ttttgccgat
    29041 ttgggcgtgc cgcgcatcga tgcggacgcg gcggcgcact cgctgacggc ttcagacggc
    29101 atcgccctgc cggaaatcag gcggctgttc ggcgacaccg tttttgacac acagggtttg
    29161 ttgcggcgcg acatattgcg taaagaagtc tttgcctccc catcgcgaaa agccttgctc
    29221 gaatccgtga tgttgccgct gattttctca gaaatcaaaa aacagcaaga aacctttacc
    29281 gatgcggttt acggcattgt cgaaattccg ctgctgacgg aaaagcgtca atttatcagc
    29341 ctgatacggc gtgtcctgac cataagcgca cctttggaaa aacgtatcgg cagggtgatg
    29401 gcccgcagcg ggctgacgcg cggcgaggtg gcggacatca tcagccatca ggcatccgaa
    29461 tccgaacgcc tgctgcttgc agacgatgtg ctgctcaatg acggcagcct caaaagcctg
    29521 cgtgagaaaa caatgcgcct gcacgcgttt tattcaggga ttttcgcctc aaaaccaaca
    29581 caaggaaaac acaatgactg aatcgcggca aacacgcctt caagtcaaat gtccgacctg
    29641 tcaaacagca gtagtatggg aacccgaaaa cgcattccgc cccttctgtt cgcaacgctg
    29701 caaactgatc gacttgggcg gatgggcaga cgggaaatat acggtttccg gccaaacgga
    29761 aagtttgccg gaaatatccg aacccgacat ggcataccgc tgaccgcccc gccttcccgg
    29821 caaacaccct gaaagtcaaa tgccgtctga aacaaacacg cttcagacgg cattttcatt
    29881 ctcaaaccta atcgttggta tttgccgtta cctcttccaa tgaagtaatg ccctgcataa
    29941 ctttcaaaat accggcccgg cgcaaatcca ccataccctc cttataggca acgtccaaaa
    30001 tatccacttc cgtaccgttg ttcataatca cacgctgcat ttcttcgctg atgggcataa
    30061 cctcatacac gcccgcacgc cccttataac cctgcccccg gcaacggtcg caaccgacgg
    30121 cgcggtaaag tttccaatct tttgcaaggt cctcatcggt gaagccgact tccttcaaag
    30181 cagaggcaga cgggcgttcc acttcctgtt tgcagctcga acacagcctg cgtaaaagac
    30241 gctgcgccat aatcaggctg accgaactgg caatattaaa cggcgcgaca cccatattca
    30301 gcatacgcga caacgtcgcc ggcgcattat tggtgtgcag ggtggaaaac accatatgcc
    30361 ctgtttgtgc cgccttaatc gcaatatcgg cagtttccaa atcacgaatc tcaccgacca
    30421 taatgatgtc cgggtcctga cgcaggaaag acttcaaagc agcggcaaaa gtcaggccct
    30481 gcttatcatt gacgttaacc tgattgatgc ccggcaggtt aatctcggca gggtcttccg
    30541 ccgttgcaat atttaccgac tccgtattca aaatattcaa acaggtatag agcgacaccg
    30601 tcttacccga acccgtcgga ccggttacca gcaccatccc gtagggacgg tgaatcgctt
    30661 ccaacaacaa ttttttctga aacggctcaa aaccgagctg gtcaatgttc aaagacgcgg
    30721 catcggaatt caaaatccgc atcacgacct tttcgccaaa cagcgtcggc aatgtgctga
    30781 cacggaaatc gacaggcttg ccgccctttt gaaaggtcag ctgcatcctg ccgtcctgcg
    30841 gtatccgttt ttcggaaatg tccaaacgcg acattacctt aatccgggaa gcaagctgcc
    30901 cccttaccgc aatgggcggc tgaaccacct cgcggagctg cccgtccaca cggaaacgga
    30961 tacgggcatt gtgttcgtaa aactcgaaat ggatgtccga tgccccgctg cgcaaggcat
    31021 ccgacaaagt cttatggata aacctcggaa cagggccatc ttctgcctcc tcgttgtcga
    31081 tatacagggt gtggctttcc tcttcctcct gcccctcccc aagctcctga agcagcgatg
    31141 tcgaacgcga acccacccaa tcgagcaaac ccgccaactg gtcatcctcg acaatgacca
    31201 actcaacctc aatccctgcg gcagaaacgg ttttctgaat ttgcggcatc tgtgtcggat
    31261 cggaaaccgc aaaaaatact ttgtcgcccc gacggaaaac cggcacacag tggaactcca
    31321 ccatctgctc ctccgtcaac acccccatca gcaccctgtg gcgcggataa tgacgcaaat
    31381 caagaatcga ataactgaac accctcgcaa tcaatgccgc aagcgacttg ggcgaaatga
    31441 caccgtctga aaacagcatc ggcaacactt ccttacccgc ctgcgactca ttgtagtaat
    31501 gctcggcctg ctcaacagta accacctggt tttgaaccag aatcctcagc aaacctacgc
    31561 tcatacgacc ttatccccaa atttattcat tgttatacct gtacag
//
LOCUS       DAXHNP010000005        29509 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.005, whole genome shotgun sequence.
ACCESSION   DAXHNP010000005 DAXHNP010000000
VERSION     DAXHNP010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 29509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29509
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.005"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(213..860)
                     /locus_tag="ACFM5C_000156"
     CDS             complement(213..860)
                     /locus_tag="ACFM5C_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF799 domain-containing protein"
                     /protein_id="HFC6067941.1"
                     /translation="MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPL
                     NESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQ
                     IFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSN
                     SGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK"
     gene            complement(857..1225)
                     /locus_tag="ACFM5C_000157"
     CDS             complement(857..1225)
                     /locus_tag="ACFM5C_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4810 domain-containing protein"
                     /protein_id="HFC6067942.1"
                     /translation="MNPKTLSRLSLCAAVLALTACGGNGQKSLYYYGGYPDTVYEGLK
                     NDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRL
                     FPESGVFMDFLMKTGKGGKR"
     gene            complement(1235..1906)
                     /locus_tag="ACFM5C_000158"
     CDS             complement(1235..1906)
                     /locus_tag="ACFM5C_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFC6067943.1"
                     /translation="MKTVSTAVVLAAAAVSLTGCATESSRSLEVEKVASYNTQYHGVR
                     TPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLNALKQE
                     SGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVN
                     TSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGA
                     WQPNR"
     gene            complement(2071..2790)
                     /locus_tag="ACFM5C_000159"
     CDS             complement(2071..2790)
                     /locus_tag="ACFM5C_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6067944.1"
                     /translation="MATLSNKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE
                     KVYDAIVEAGHPEPFAIRFDLMSAEEKEFNQFAATIAEATQGKLDGIVHCAGYFYALS
                     PLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF
                     GASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVL
                     PAFVWWASTESKGRSGEIVYL"
     gene            complement(2874..4187)
                     /gene="hpnE"
                     /locus_tag="ACFM5C_000160"
     CDS             complement(2874..4187)
                     /gene="hpnE"
                     /locus_tag="ACFM5C_000160"
                     /EC_number="1.17.8.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxysqualene dehydroxylase HpnE"
                     /protein_id="HFC6067945.1"
                     /translation="MMNTPHPRPKIAVIGAGWAGLSAAVTLARHADVTLFEAGRQAGG
                     RARTLAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQ
                     FRALPLPAPLHILGGVLLARRAPTAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRN
                     VPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIV
                     AEPALADLQRLGADIRLETRVCRLNTLPDGKVLVNGEAFDAAVPATAPYHAAALLPEG
                     TPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEV
                     SAVISVSDRVGAFTNRAWADKVHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDL
                     SWLHRHRIFPAGDYLHPDYPATLEAAVQSGFAAAETCLQSLSDAV"
     gene            complement(4266..5138)
                     /gene="hpnD"
                     /locus_tag="ACFM5C_000161"
     CDS             complement(4266..5138)
                     /gene="hpnD"
                     /locus_tag="ACFM5C_000161"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HFC6067946.1"
                     /translation="MKGLDYCRQKAEESRSSFLSGFRFLTQEKRDAVTILYAFCRELD
                     DVVDECSNPDVAQATLNWWRGDLDKVFGGAMPEHPVNQALRQVKETFKLPKYELEALI
                     DGMQMDLVQARYGSFEELKLYCHRVAGVVGCLIARILGFSDSKTLEYADKMGLALQLT
                     NIIRDVGEDARNGRIYLPMEEMRRFDVPASVILQCRPTENFTELMAFQIKRARETYRE
                     AVSLLPDADKKAQKVGLVMAAVYYALLNEIDRDGAQNVLKYKIALPSPRKKRIALKTW
                     LFGFKPRPGTPERA"
     gene            5309..7171
                     /gene="hscA"
                     /locus_tag="ACFM5C_000162"
     CDS             5309..7171
                     /gene="hscA"
                     /locus_tag="ACFM5C_000162"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HFC6067947.1"
                     /translation="MALLQISEPGMSAAPHRHRLAAGIDLGTTNSLVATVRSGSAACL
                     PDAEGRVTLPSVVRYLENGGIEVGKTALSAQKTDPLNTVSSAKRLIGRTLADLHQNTH
                     YLPYRFGDNQRVIELHTRQGVKTPVEVSAEILKTLKSRAEETLGGDLVGVVITVPAYF
                     DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNASEGTFVVYDLGGGTFDVSVL
                     QLTKGLFEVKATGGNSALGGDDFDHRLFCYLLEQNGLSQLNEQDSQLLLSLVRAAKEQ
                     LTTQTEARIQATLSDGMAIDTSISRAEFHNLTQHLVMKTLEPVKQALKDAGVGKNEVK
                     GVIMVGGSTRMLHVQQAVATFFGQTPLNNLNPDEVVALGAAIQANVLAGNKADGEWLL
                     LDVTPLSLGLETYGGLAEKIIPRNSTIPTARAQDFTTFKDGQTAMTIHVVQGERELVA
                     DCRSLAKFTLRGIPPMAAGAARIRVTFQIDADGLLSVSAQEQSTGVHAQIEVKPSYGL
                     DDGAITRMLKDSMDNAAEDMAARARAEAVVEAESLTDAVNAALELDSDLLDAEELQQI
                     RQGIADLQGRLKDGKAEDIRAAAAKLGSITDNFAAKRMNRNIQRALTGQSVDNI"
     gene            7248..7904
                     /locus_tag="ACFM5C_000163"
     CDS             7248..7904
                     /locus_tag="ACFM5C_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6067948.1"
                     /translation="MEKSGIVYLMKTVIKGVYKIGISEVSNFEGRMRHLENNGYANVA
                     GLERILAVKTDNYKEKENLLHEIFSKSRIGDTELFAVDENLVKRLFLSLRGEIVFPKN
                     ETAESEFEKSVHERRQEGNAESGRKQLLDLVRRGHREYPYALPRLLAGAASYKPKKSK
                     IRLFKEAYFRKNGRRLTDEIADGIHIYTCFSRADLEKAYSEYLELFKSESDAESRKPR
                     "
     gene            7940..8701
                     /locus_tag="ACFM5C_000164"
     CDS             7940..8701
                     /locus_tag="ACFM5C_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2314 domain-containing protein"
                     /protein_id="HFC6067949.1"
                     /translation="MMGDSVIYYVEQADKPVNRAGERARKTFEYFWRELFWERRRIIP
                     ALDFAMVKAPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCV
                     PVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEK
                     EHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLE
                     YGANPASKTSEGYTALDFARLAGWQNVADLLEPRH"
     gene            8756..9097
                     /gene="fdx"
                     /locus_tag="ACFM5C_000165"
     CDS             8756..9097
                     /gene="fdx"
                     /locus_tag="ACFM5C_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009425374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HFC6067950.1"
                     /translation="MPKITVLPHTTLCPEGAVIEDAPEGKTVLDVLLDHDIEVDHACE
                     KSCACTTCHVIIRKGFDSLEEPTELEEDLLDQAWGLEADSRLSCQAVVAGEDLIVEIP
                     KYTINHAREEH"
     gene            complement(9384..9971)
                     /locus_tag="ACFM5C_000166"
     CDS             complement(9384..9971)
                     /locus_tag="ACFM5C_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HFC6067951.1"
                     /translation="MNNMFAAKLSKLVYTASDHPDSLSEMEEFDRLILLIRKLYQILD
                     GQHILSRVTVCLHYRSRRGLIALDKAAAGCDAAMLRAQRWRIYTQIAERLAGSGGGFT
                     VTAESVSAACPELEGRYLELVRRTATSFGFVQVQEYPAGGQEETQAVPDAASDHSVRK
                     PIKINIEAKVERYPAYRPTAALKVTRRRFFRLQNR"
     gene            10184..10381
                     /gene="iscX"
                     /locus_tag="ACFM5C_000167"
     CDS             10184..10381
                     /gene="iscX"
                     /locus_tag="ACFM5C_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HFC6067952.1"
                     /translation="MKWTDTRRIAEELYDLHGETIDPRTVRFTQLRDLIMALPEFDDD
                     PARCGERILEAVQQAWIDEAE"
     gene            complement(10449..10850)
                     /locus_tag="ACFM5C_000168"
     CDS             complement(10449..10850)
                     /locus_tag="ACFM5C_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6067953.1"
                     /translation="MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKV
                     KNSKTIDIGDIIDLTLNSLPYKIKVKGLNHQRRPASEARLLYEEDAKTAALREERKQL
                     DQFSRITSAYPDGRPTKRDRRQLDRLKKGDW"
     gene            11061..12020
                     /locus_tag="ACFM5C_000169"
     CDS             11061..12020
                     /locus_tag="ACFM5C_000169"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFC6067954.1"
                     /translation="MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIHRLQKKS
                     NDLTKSIFSKLTPAQVSQVSRHPQRPYTLDYIDALFTDFEELHGDRHFADDHAIVGGL
                     ARFNGQSVMVVGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKTAEKFGLPVMTFIDT
                     PGAYPGIGAEERGQSEAIGKNLYELTRLHVPVLCTVIGEGGSGGALAVAVGDYVNMLQ
                     YSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEPLGGAHRDF
                     GQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRIMAYGKFSEQ"
     gene            12088..13398
                     /gene="tilS"
                     /locus_tag="ACFM5C_000170"
     CDS             12088..13398
                     /gene="tilS"
                     /locus_tag="ACFM5C_000170"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFC6067955.1"
                     /translation="MLTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVRA
                     GKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVGLETVKVCVEKNGLGIEAAAR
                     QKRYAAFAEKGFDVLALAHHRDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWR
                     PLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGRHVLN
                     NVRALQEDLALLDEIIGQDCRWVCEEGSFDTVRWQAFSPRRKTHILRYFLKENGIPMP
                     NQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFRLEKTDKLRFLKDRQISGNLR
                     EILTGQGFVLKRHPFGLPEHLLEQDGILRTVAVSDTLAVGGIHKDVKKILQGKRVLPV
                     LRPIWPLVADSGNRPLALANCCADFQYSVSDGILPVHPDFPILF"
     gene            13472..14257
                     /locus_tag="ACFM5C_000171"
     CDS             13472..14257
                     /locus_tag="ACFM5C_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HFC6067956.1"
                     /translation="MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQ
                     SGRKPVGVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISSLTCADDVLALIDI
                     PDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGM
                     GAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLCGPTAWVFGNEGAGV
                     GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSAY"
     gene            14267..14464
                     /locus_tag="ACFM5C_000172"
     CDS             14267..14464
                     /locus_tag="ACFM5C_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067957.1"
                     /translation="MPSEKIYYGVLIFLCIASMLLSPFFYAGALKPKKAALRKDGQWK
                     LILLSNTVAAAVLAWVWWKWF"
     gene            14726..15079
                     /locus_tag="ACFM5C_000173"
     CDS             14726..15079
                     /locus_tag="ACFM5C_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067958.1"
                     /translation="MKNCEFFYDPTRAIYDSGADYLTREKHRLVVIANSAWGLLLNLS
                     CYYDEVLEKRKIPFGKQEIDDDMDKVSALKRKFKDISEIKVGDGWEYPFNYEQGMKEL
                     DEVLLKYIPFFEEER"
     gene            15091..15396
                     /locus_tag="ACFM5C_000174"
     CDS             15091..15396
                     /locus_tag="ACFM5C_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067959.1"
                     /translation="MRVSKIIGSMLLVTAVQTVFSANVYACRHNGKTSYSQTPGKHCT
                     NAGLGRDRVYSSVRPAVKDRAEDAGVGDYSDTVRDEHVQNPKGNAQKDGSDAGIRPH"
     gene            15458..16834
                     /gene="mpl"
                     /locus_tag="ACFM5C_000175"
     CDS             15458..16834
                     /gene="mpl"
                     /locus_tag="ACFM5C_000175"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HFC6067960.1"
                     /translation="MKHIHIIGIGGTFMGGIAAIAKEAGFEVSGCDAKMYPPMSTQLE
                     ALGIGVHEGFDAAQLEEFKADVYVIGNVAKRGMDVVEAILNRGLPYISGPQWLAENVL
                     HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN
                     SQSPFFVIEADEYDTAFFDKRSKFVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHL
                     VRTVPSEGLIICNGQQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGSFDVLLDGK
                     TAGRVKWDLMGRHNRMNALAVIAAARHVGVGIQTACEALGAFKNVKRRMEIKGTANGI
                     TVYDDFAHHPTAIETTIEGLRQRVGNARILAVLEPRSNTMKLGTMKSALPVSLKEADQ
                     VFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNGGFGGIH
                     GKLLDALR"
     gene            17041..18093
                     /gene="bioB"
                     /locus_tag="ACFM5C_000176"
     CDS             17041..18093
                     /gene="bioB"
                     /locus_tag="ACFM5C_000176"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HFC6067961.1"
                     /translation="MTVSPVALRRKTECKPHPTARYWKKCDVEALFGLPFLDLIYQAA
                     EIHRQNFNPREIQLSTLLSIKTGGCPEDCAYCPQSAHHNTNLGKEQMMDVDEIVEKAK
                     IAKSRGASRFCMGAAWRGPKPKDVETVSAIIKAVKGLGMETCGTFGMLEEGMAEDLKE
                     AGLDYYNHNLDTDPDRYNDIIHTRQHEDRMDTLGKVRNAGLKVCCGGIVGMNETRAER
                     AGLIASLANLDPQPESVPINRLVKVEGTPLADAEDLDWTEFVRTIAVARITMPQSYVR
                     LSAGRSNMPEAMQAMCFMAGANSIFYGDKLLTTGNPDEDGDRILMEKLNLYPLQFEPE
                     GEVAEVEKASGIKVDY"
     gene            complement(18171..18806)
                     /locus_tag="ACFM5C_000177"
     CDS             complement(18171..18806)
                     /locus_tag="ACFM5C_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6067962.1"
                     /translation="MNIKYSGIENRFETAILKKNGVRYGFVSFAPNLAAVKLNDYAKV
                     RKLITKTKQKADIVIVMFHGGAEGKQAEHLPFDTEIFYGENRGNVVEFARLAVDSGAD
                     VVFGQGPHVTRAVELYRDRFISYSGGNFATYGAINTSGISGIAPIFKIITDKQGRFVS
                     GNIIPITQVGDKIPKIDPEKTVIGRIIYLNRSDFPKGNGLDVSPDGSITRR"
     gene            complement(18930..19169)
                     /locus_tag="ACFM5C_000178"
     CDS             complement(18930..19169)
                     /locus_tag="ACFM5C_000178"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067963.1"
                     /translation="MGVCTFFRRTAFVKQRAFEVADGNVRVLQGRFDVFQNIGIGQVI
                     DRIIAAEHNVAHADNGNGIGCLFVRRILSVHIAGI"
     gene            19156..19389
                     /locus_tag="ACFM5C_000179"
     CDS             19156..19389
                     /locus_tag="ACFM5C_000179"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6067964.1"
                     /translation="MQTPKICYAFRTPSAYGQYLADAGFDYLSFANNHSNDFGAQGIT
                     ATAAGGSSFTYSIALKPLPITRPKLRKIPPSPR"
     gene            complement(19452..21311)
                     /gene="ilvD"
                     /locus_tag="ACFM5C_000180"
     CDS             complement(19452..21311)
                     /gene="ilvD"
                     /locus_tag="ACFM5C_000180"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFC6067965.1"
                     /translation="MPEYRSKTSTHGRNMAGARALWRATGVMETDFGKPIIAVANSFT
                     QFVPGHVHLHNMGQLVAREIEKAGAIAKEFNTIAIDDGIAMGHSGMLYSLPSRDLIAD
                     SIEYMVNAHCADALVCISNCDKITPGMLIAAMRLNIPTIFVSGGPMEAGKVIGVANIQ
                     PERRLDLIDAMIESADDNVSNRQVEEVEQNACPTCGSCSGMFTANSMNCLTEALGLSL
                     PGNGSYLATHAGRKELFLEAGRMIVEITKRYYEQNDETVLPRSIATKKAFENAMTMDI
                     AMGGSTNTILHLLAVANEAGVDFKMADIDRLSRVVPCICKTAPNNHDYYMEDVHRAGG
                     IFAILKELDKAGKLHTDVHTIHAPTLKDAIEKWDVTNPENTRAIERFKAAPGGVRTTQ
                     AFSQNRMWKTLDLDREKGCIRDVAHAYSQDGGLAVLFGNIAERGCVVKTAGVDESILK
                     FTGRARVFESQEAAVEGILGNQIVAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLG
                     KACALLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVHEGDTVEIDIPNRSIHLVISDE
                     ELAARRAEMEARGSKAWKPENRDRYVSAALRAYGAMATSADKGAVRDVAQIER"
     gene            complement(21484..23253)
                     /gene="cysI"
                     /locus_tag="ACFM5C_000181"
     CDS             complement(21484..23253)
                     /gene="cysI"
                     /locus_tag="ACFM5C_000181"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HFC6067966.1"
                     /translation="MTVQTKTKGLAWQEKPLSDNERLKTESNFLRGTILDDLKDPLTG
                     GFKGDNFQLIRFHGMYEQDDRDIRAERAEAKLEPLKFMLLRCRLPGGIIKPSQWIELD
                     KFARENSHYRSIRLTNRQTFQFHGVPKAKLQTMHRLLHKLGLDSIATAADMNRNVLCT
                     SNPIESELHRQAYEYAKKISEHLLPRTRGYLDVWVDGKKVQSSDDFLQEDEPILGKTY
                     LPRKFKTAVVIPPLNDVDCYGNDLDFVAISDGGGQLAGFNVLAGGGLSMEHGNTKTYP
                     NISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERR
                     MGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAK
                     IHKGDFRITANQNLIVANVAEADKAKIEELARTYGLIRNDVSKLRENAMSCVSFPTCP
                     LAMAEAERVLPDFIDELDKIMAKHGTSDDYIVTRITGCPNGCGRAMLAEIGLVGKAVE
                     RYNLHIGGDREGVRIPRLYKENITLPEILAELDDLIGKWAAERNIGEGFGDFAIRTGI
                     VKPVLNAPVDFWDASKAVAIARA"
     gene            complement(23280..24851)
                     /locus_tag="ACFM5C_000182"
     CDS             complement(23280..24851)
                     /locus_tag="ACFM5C_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HFC6067967.1"
                     /translation="MSEHDMQNTNPPLPPLPPEITQLLSGLDAAQWAWLSGYAWAKAG
                     NGASAGLPALQTALPTAEPFSVTVLSASQTGNAKSVADKAADSLEAAGIQVSRAELKD
                     YKAKNIAGERRLLLVTSTQGEGEPPEEAVVLHKLLNGKKAPKLDKLQFAVLGLGDSSY
                     PNFCRAGKDFDKRFEELGAKRLLERVDADLDFTASANAWTDNIAALLKEEAAKNRATP
                     APQATPPADLQTASEGRYCKAAPFPAALLANQKITARQSDKDVRHIEIDLSGSDLHYL
                     PGDALGVWFDNDPALVREILDLLGIDQATEIQAGGKTLPVASALLSHFELTQNTPAFV
                     KGYASFADDDELDRIAADNAVLQGFVQSTPIADVLHRFPAKLTAEQFAGLLRPLAPRL
                     YSISSSQAEVGDEVHLTVGAVRFEHEGRARAGGASGFLADRLEEDGTVRVFVERNDGF
                     RLPEDSRKPIVMIGSGTGVAPFRAFVQQRAAENKDVEAALLDVIIGAGHLDEEGAEEY
                     LDMLREEKRYQRDVY"
     gene            complement(24848..26134)
                     /locus_tag="ACFM5C_000183"
     CDS             complement(24848..26134)
                     /locus_tag="ACFM5C_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit 1"
                     /protein_id="HFC6067968.1"
                     /translation="MTAQHQTPLRFITAGSVDDGKSTLIGRLLYDSKALLSDQIKTLE
                     SGKSNGLKETIDFSILTDGLEAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRN
                     MVTGASTASAAVVLVDASQLDFGAQPLQLLPQTKRHSAILRQLNCPHIVVAVNKMDLL
                     DYSEDKFNAIVEAYRRLAEQLGLKDVHFVPVSALLGDNIVYPGGNMPWYKGEPLLSIL
                     ENLPGADETGRSAADFYFPVQLVVRQDADKADDFRGYQGRIERGSVAVGQTVRIEPNG
                     LTAEVSEIITPKGEVAQAFAGEAATLRLDRDIDVSRGDLFVDKNSPLAPQKHLEATLC
                     WFDERPLNTARKYLLKHGTQTVPAKVGEIESVLDVRTLEQEAGAESLKMNDIAKVRIN
                     LQKPVTATPYAENTAAGSFILIDEATYGTVAAGMIL"
     gene            complement(26173..27096)
                     /gene="cysD"
                     /locus_tag="ACFM5C_000184"
     CDS             complement(26173..27096)
                     /gene="cysD"
                     /locus_tag="ACFM5C_000184"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HFC6067969.1"
                     /translation="MTKTEPNNAQLDWLESESIHIIREVAAECENPALLFSGGKDSVV
                     LLALACKAFRLGSRPVKLPFPLVHIDTGHNYPEVIAFRDAQAAKLNARLIVGRVEDSI
                     AKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRDEEKARAKERIFSFRDEF
                     GQWNPKAQRPELWSLYNTRLHKGENMRVFPISNWTELDIWQYIARENLELPPIYYSHR
                     REVVRRRGLLVPVTPLTPKMPSETSEILDVRFRTVGDISCTCPVESTASTPTEIIRET
                     AVADISERSATRLDDQASEAAMEKRKKEGYF"
     gene            complement(27134..27874)
                     /locus_tag="ACFM5C_000185"
     CDS             complement(27134..27874)
                     /locus_tag="ACFM5C_000185"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HFC6067970.1"
                     /translation="METTLLKPALWQIPHIGSGSETALAEKTETLKQRLHRIAGSHRD
                     ARFASSLAAEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRF
                     QPIREDALHYVESKGRFAFYDSVEARRECCRIRKIEPLNRAIAGADAWLTGQRREQSA
                     TRTELPFAEYDAGRGIGKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCT
                     RPVKAGEDIRAGRWWWEGRNSKECGLHK"
     gene            complement(27885..29336)
                     /gene="cysG"
                     /locus_tag="ACFM5C_000186"
     CDS             complement(27885..29336)
                     /gene="cysG"
                     /locus_tag="ACFM5C_000186"
                     /EC_number="1.3.1.76"
                     /EC_number="2.1.1.107"
                     /EC_number="4.99.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0043115 - precorrin-2 dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051266 - sirohydrochlorin ferrochelatase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siroheme synthase CysG"
                     /protein_id="HFC6067971.1"
                     /translation="MNYFPIFANLAGRPVLVVGGGAVAARKISLLLKAGAEVRVAAKH
                     LNAELSALAAENKILWLAEEFRAEHIRTVFLIIAASSDQALNRRVFHLAESCQKPVNV
                     VDDRDHCSFIFPSVIDRNPVQIAVSSSGSAPVLARLLRERLEALLPPSLGDMAEISGR
                     WRDAVKDKLKSVTERRRFWEKQFNGRFAALVKNRQNTLAERELAGQLEQSRQNDQGGS
                     VSLVGAGPGDAGLLTLKGLQEIQQADVVLYDALVSDGILSLVRRDAERIFVGKRARGD
                     RTPQEDTNALMVRLAREGRRVVRLKGGDPFVFGRGGEELETLARHQIPFSVVPGITAA
                     VGATAYAGIPLTHRDYAQSAVFVTGHRKADAPDIEWQTLARSRQTLVIYMGALKAALI
                     AERLQQHGRSPDTPAAVISQGTLPAQKTATGTLANLAELAETAPNPALIVIGEVVGLH
                     EKLAWFGENGEGENRVGQAYPALGGLNAGQRAA"
BASE COUNT         6324 a         7776 c         8532 g         6877 t
ORIGIN      
        1 cgccttgtcc tgatttttgt taatccacta taccatacaa ccacgccgga attaagttta
       61 aatttgaata aaaggttcgg gttctgcaaa atacagaacc cgaaccttgt tcggatattg
      121 aaaccggccg cccgattttg ggcggtgcgg cttgcaagta tcaagattcg catatgccgt
      181 ctgaagctcg gagaggttca gacggcatat gcttatttgg gctgctcttc gacgaatctc
      241 ggacctttca agatgccgtt gtgagaatag ggcgacagca ggttgtatgc ggcggttttg
      301 gaaacctgat aaccgcggtc ggtcaggctg ttggcaatct gattgaccac tgcgctgacc
      361 aaagccccca acaggccgct gttgctgttg ttgctgcctt cgcggatgct ggccgaaccc
      421 gaccacaact cttttccgtt gcgggaatcg accagccgtg ctttggcgga tacggtcgtc
      481 acgctgtcta aaatttgata tgaagtgccg tattcggtaa ccgtaatgta caaaaccgca
      541 tcattgccga aaatctgatg cagtttttcc ggccggacgg cgtgaatatc ggcggcattg
      601 gtcaagccgt tttgtttgaa ggtttcctcc acgactgcgg cggggaagac gtaatagccg
      661 gcttcggaaa gcggcgcggc ggtcgaagcc agtacacccc atgttccgtt gacatcgggc
      721 gattcgttca gcggcggaac caccaaaatt gaagccggtt tgctttcctt gaatgacgtg
      781 tagtcgaaat cgggcgcttt ttgaacttgg caggcagaca gcgccaacac ggcggcaagc
      841 cctaaaatca aaggtttcat cgcttgcctc ctttaccggt tttcatcagg aagtccataa
      901 atacgcccga ttcgggaaac agccttttct cttcttcaaa ctggcggaac gcgccctctt
      961 tgtctcccga acgggaaagc agcagtccca gatgggcgtg cgcacccggg gcggcattca
     1021 tttttttgtt gccggcttcc acaaagtatt tttccatctt ttcggtctgc ttgcccaacg
     1081 aagtgtcgtc gtttttcaaa ccttcataga cggtatcggg atagccgccg taataataca
     1141 gggatttttg cccgttgccg ccgcaggcgg tcagagccaa gaccgccgca cacagcgaca
     1201 aacggctcaa ggttttcgga ttcatcattt ctccttaacg gttgggttgc catgcgccgt
     1261 tgtcaacagc ctgaaccagg ctgttgacgg cttcgcggat tgccaagtct aaaactttgc
     1321 cgttcaaagt cgcatcgtag ccggaagtgc cgccgaaacc gatgatttca cggttggaaa
     1381 gtgcgtattc gcccgcgccc tgtgcggaat agacgatttc ggaagtattg acgttgacga
     1441 tattcagagc cacttttgca taggcgattt gcgatttgcc gcgacccaaa atgccgaaga
     1501 gctgatgatc gccgacatct ctgcgtccga attcggttac atcgccggta acgacataat
     1561 ctgcgccttt caggttatgc gctttgccgg aaatgccgga ttcctgtttt aatgcgttca
     1621 aattggtgcg gttcagtacg ttgaagcggt tggtctgttg caggtgcgtt actagaatgg
     1681 tttttgcctg gctgcccaaa cggtcttccc cgtcggagaa aatgcctttt tggaagctgg
     1741 agcggttgtc gaatgttccg acggaaatcg gggtacgaac accgtgatat tgcgtattgt
     1801 aggaggcgac tttctctacc tcgagactgc gtgaggattc ggtcgcacag ccggtcagtg
     1861 aaacggcagc ggcggcaagg acaacggcgg tggaaacggt tttcataaaa tttaccctaa
     1921 ggtcaagtta aggaaataac gggttatcat tattgtcctt atgtaaattt aagtcaaggt
     1981 gtttgtctgt gcgggacgga tgcgcgcgga aggtacggat atttttcaaa cggaatcgcg
     2041 gcgcgggcgg gatgcctgcc ttttccggat ttagaggtaa acgatttcgc cgcttcgccc
     2101 tttgctttcg gtacttgccc accagacaaa tgcgggcagc acgtccccgt agcttttgcg
     2161 ttcgcttttg gcttcgcccg gatgggattt gatgcgttgc ggggaattga tgggtccggg
     2221 gacgaggacg ttggcgcgca ggttgccgaa gcgttcccat tcgtcggcgg cgactttgca
     2281 caggtagttc aacgcggctt tggacgcgcc gaagccgccc cagtaggctt tgggtgtttc
     2341 gccgtggctt tcgccgacga agatgacgga cgcgtcgggc gactgcttca gcagcgggaa
     2401 cagggcgcgg gtcagcccca taggtgcgac ggtgttgatg cggtattggt tgacccattc
     2461 ggcgacggtt tggaaatcca gcggcgagag ggcgtaaaaa tagccggcgc agtggacgat
     2521 gccgtccagt ttgccttgcg tggcttcggc aatggtggcg gcgaactgat tgaattcttt
     2581 ttcttccgca ctcatcaggt cgaaacggat ggcgaagggt tcggggtgtc cggcttcgac
     2641 aatcgcgtca tagacttttt ccagtttttt ctgatggcgt gccaccagaa tcacggttgc
     2701 gcctgccgcc gcataggctt tggcgacctg ttcgcccaga ccttgcgatg cgccggtaac
     2761 taagatggtt ttgttggaca gtgtcgccat actttttcct ttttggtggt cggtcggggg
     2821 tattttagcg ttttgccgca ccttgtaaag cgtcccgata ccagccggcg ttttcagacg
     2881 gcatcgctca ggctttgcag gcaggtttcc gccgccgcga aacctgattg tacggcggct
     2941 tcgagcgtgg cggggtagtc tgggtggagg tagtcgccgg cggggaagat gcggtgccgg
     3001 tgcagccacg acaaatccgg cggcggggca tcggctgcgg ttgtggcgcg tttttcggtg
     3061 atgacgcgca cggcttcggg ttcgcccaaa tgcggaagga tgcgtttgag gtcggcgtga
     3121 actttgtccg cccacgctcg gtttgtaaac gcgccgacgc ggtcggaaac gctgatgacg
     3181 gcggacactt cgttttcagg cagtccgagc ctgccccggc aaagcagcca ttgcaccgtg
     3241 ccgtcggcaa ggccggtcag cggggcgggc aggcggacgg gttcggcgta gcgcagatag
     3301 acggtggtga tggcgtggta gcgaaggttt tgatatgccg tctgaacgtg ttcgggcgtg
     3361 ccttcgggca ggagcgcggc ggcgtggtag ggcgcggtgg cggggacggc ggcatcgaaa
     3421 gcttcgccgt tgacgagcac tttcccgtcc gggagggtgt tcagacggca tacgcgcgtt
     3481 tcgaggcgga tgtccgcgcc gagccgttga agatccgcca aggcgggttc ggcgacgatt
     3541 gcgcccaaat cctgcttggg taggagatag tcgctgccgg attttttcgt cagcacgccg
     3601 tcggacaaaa cgttgcacaa cacgcgcagg cttgcggttt ccaaaggcgt gttgagcgcg
     3661 ccccaaacca agggctgcca aaactgcatc acggcggcac gcggcacgtt ccgctgtttc
     3721 agccattgcg ccactgtcgt gtcgggctgt ccgaggcgtg cggacttctg caaatcggac
     3781 atatcggcaa gcagtttggc tttgaatgca gtcggtgcac gccgggcaag cagcacgccg
     3841 cccaaaatat gcagcggcgc gggcaggggg agggcgcgga actgcaaacc gccgtgcata
     3901 tgccagtgca gcggtacgcg caaaaaggcg gcacggggat ccgaaccgat ggttttcatc
     3961 aggcgcaaca cgccccggta tgcgccgagc aaaatgtgct gcccgttgtc caaaaaaccg
     4021 aaaccgtcgg tatttccggc cagtgtgcgc gccctgccgc ccgcctgccg gccggcttca
     4081 aacagggtaa cgtcggcgtg ccgcgccaag gtgacggcgg cggacagtcc tgcccagcct
     4141 gcgccgatga cggcgatttt cgggcgcgga tgcggcgtgt tcatcattta ttcctccaat
     4201 ggttgaaacc ccgtttttcg gggcggcggg ggttgggttt tcctgaaggg cgggcggtat
     4261 gcgccttatg cccgttccgg cgtgccgggg cgcggtttga atccgaataa ccaggttttc
     4321 agggcaatgc gttttttgcg cggcgaaggg agggcgattt tgtatttgag gacgttttgc
     4381 gcgccgtctc ggtcgatttc gtttaaaagc gcgtaataaa ccgccgccat aaccagtccg
     4441 actttttggg cttttttgtc ggcatcaggc agcagcgata cggcttcacg gtaggtttca
     4501 cgcgcacgct ttatttggaa tgccatcaat tcggtgaaat tttctgtcgg ccggcactgc
     4561 aaaatcacac ttgcggggac atcaaaccgc cgcatttcct ccatcggcag gtaaatccgc
     4621 ccattacggg cgtcttcgcc gacatcgcgg atgatgttgg tcagttgcag cgcaagtccc
     4681 attttgtcgg cgtattccag tgttttgctg tctgaaaacc ccaaaatccg cgcaatcagg
     4741 cagccgacta cgcctgcgac gcggtggcaa tacagtttca attcctcaaa actgccgtaa
     4801 cgcgcctgaa ccaaatccat ctgcatcccg tcgattaagg cttccagttc atatttcggc
     4861 agcttgaagg tttccttaac ttgccgcaag gcctgattga cggggtgttc cggcatcgcg
     4921 ccgccgaata ccttgtccaa atcgccgcgc caccagttca atgttgcctg tgcaacatcg
     4981 gggttggaac attcgtcaac cacatcgtcc aattcgcggc aaaaggcata taaaatcgtt
     5041 accgcatccc gtttttcctg agtcaggaaa cggaagcccg ataaaaaact ggagcggctt
     5101 tcttctgctt tttgacggca atagtcgagt cctttcacga tttatattcc taatgatggg
     5161 cgggaaaggc ggattttatc ggcatttggc ggtagagggc aatttcggcg gcacgaccca
     5221 atccttagcg gtttgctcaa ctatcggcgc gaattctgtt aaaatgccgc tttccttcct
     5281 ttacacaccg caccgacagg cagaatttat ggctcttttg cagatttcag aaccgggtat
     5341 gtccgccgcc ccgcaccggc accgtttggc agcaggcatc gatttgggta cgaccaacag
     5401 cttggttgcc accgtccgca gcggcagtgc cgcctgcctg cccgatgccg aagggcgcgt
     5461 taccctgcct tccgtcgtcc gctatctgga aaacggcggc attgaagtcg gcaaaaccgc
     5521 cctgtccgcc caaaaaaccg acccgctgaa caccgtcagc tccgccaaac gccttatcgg
     5581 gcggacgctt gccgatctgc atcaaaatac gcactacctg ccttaccgtt tcggcgacaa
     5641 tcaacgcgtt atcgaattgc atacgcggca gggggtgaaa acgcctgtcg aagtgtcggc
     5701 ggaaatcctc aaaaccctta aatcgcgcgc cgaagaaacc ttgggcggcg atttggtcgg
     5761 cgtggtgatt accgtccccg cctatttcga cgatgcccaa cgccaggcca ccaaagatgc
     5821 cgcgcggctg gcgggtttga acgtattgcg cctgctcaac gaacccaccg ccgccgcaat
     5881 cgcctacggg ctggacaacg cctcggaagg cacgtttgtc gtgtacgact tagggggcgg
     5941 cacattcgac gtatccgtat tgcaactgac caaaggactg tttgaagtca aagccaccgg
     6001 cggcaacagc gcgttgggcg gcgatgactt cgaccatcgt ttgttctgct acctgctcga
     6061 acaaaacgga ctctcccaac tcaacgaaca agacagccaa ctcctgcttt cgctcgtccg
     6121 cgccgccaaa gaacaattaa ccacgcaaac cgaagcgcgc attcaggcga cgctttcaga
     6181 cggcatggca atcgacacaa gcatcagtcg cgccgagttc cacaacctga cgcagcattt
     6241 ggtgatgaaa acgctcgaac cggtcaaaca ggcgttgaaa gatgccggtg tcggtaaaaa
     6301 cgaagtcaaa ggcgtaatta tggtcggcgg ttcgacccgt atgctgcacg tccagcaggc
     6361 agtcgccacc tttttcgggc aaaccccgct gaacaacctc aaccccgacg aagtcgtcgc
     6421 gctcggcgca gccatacagg cgaacgtcct cgcaggcaac aaagccgacg gcgaatggct
     6481 gctgctggac gttacgccct tgtcgctcgg tttggaaacc tatggcggct tggcggaaaa
     6541 aatcatcccg cgcaattcca ccatccccac cgcgcgcgcg caggacttta ccaccttcaa
     6601 agacggtcag accgcgatga cgatacacgt cgtacaaggc gaacgcgaac tggttgccga
     6661 ctgccgcagc cttgccaaat tcaccctgcg cggcattccg ccgatggcgg cgggtgcggc
     6721 gcgtatccgc gtaaccttcc aaatcgatgc ggacgggctg ctgtccgttt ccgcccaaga
     6781 acaaagtacc ggcgtacacg cgcaaatcga agtcaaacct tcctacggtt tggatgacgg
     6841 cgcgattacc cgaatgctta aagacagtat ggacaacgcc gccgaagata tggcggcacg
     6901 cgcccgcgcc gaagccgtgg tcgaagccga aagcctgacc gatgccgtca acgccgccct
     6961 cgagttggac agcgatttgc tggatgccga agaattgcaa cagattcggc aaggtatcgc
     7021 cgatttgcaa ggccgtctga aagacggaaa agccgaagac atccgcgccg ccgccgccaa
     7081 actcggcagc atcaccgaca atttcgccgc caaacgcatg aaccgcaaca tccaacgtgc
     7141 gctgacaggc cagagtgtcg ataatatttg atacttaaac ggtttcagac ggcatagaga
     7201 taacctgatg ccgtctgaag gctcgaaaac acttgaaaaa catcgatatg gaaaagtcag
     7261 gcattgtcta tctgatgaaa accgtcatca agggcgtata taaaatcggc atttcggagg
     7321 taagcaattt tgaaggcaga atgcgccatt tggaaaacaa cggctatgcg aacgttgccg
     7381 gattggagcg catcctcgcc gtcaaaaccg acaattacaa agaaaaagaa aacctgctcc
     7441 atgaaatttt cagcaaaagc aggataggcg ataccgaatt gttcgccgtg gacgaaaacc
     7501 ttgtaaaacg tttgttttta tcgcttcgcg gcgaaatcgt gttcccgaaa aacgaaacgg
     7561 cggaatcgga atttgaaaaa agcgtccacg aacgcaggca ggaagggaat gccgaatccg
     7621 gccgcaaaca actgcttgat ttggtacggc gcggacaccg ggaataccct tacgcgctgc
     7681 cccggctttt ggcgggcgcg gcatcctaca agccgaaaaa atcgaaaatc cgccttttta
     7741 aagaagcata tttccgcaaa aacggcagga ggctgacgga cgaaattgca gacggcatcc
     7801 atatttacac ctgtttttcg cgggcggatt tggaaaaagc ctattccgaa tatttggaac
     7861 ttttcaaatc cgaatcggat gccgaaagca gaaaaccacg gtaaggtgca aacagatacc
     7921 gtacacgttg aggagcagta tgatgggcga ttccgtcatt tattatgtag aacaggcaga
     7981 caaaccggta aaccgtgccg gcgaacgcgc ccgtaaaaca ttcgaatatt tttggcgcga
     8041 gcttttttgg gaacgccgcc gcatcattcc cgccttagat tttgccatgg tcaaagcccc
     8101 ttttttccaa gacggcgaag acggcgaaat ttgcgaacat atgtggatcg acgatattta
     8161 ttttgacggt ctttacattt atggcgtgct gaacaatgaa cccggcgaac tgaccaatgt
     8221 cgaacaaggc gaaagcgttt gcgttccggt tgacgacatc agcgactgga tgttcgtgtg
     8281 caacggcatt ccctacggcg gctttaccat acaggcaatg cgtggacaga tgacggaaga
     8341 ggagcgtacc gaacacgatg ccgcatgggg aatcgatttc ggcgatcccg ggcaggtatt
     8401 gctggtgtat gaagaaaaag aacatcccga aaatctggaa gagcatccga tgtgccggaa
     8461 ctgtattgac gattttcggc aacagttgtc ccaaaatccg gattttctgc atgagcagga
     8521 cgaagacggc tatacgccgc ttcatcatga agccatcgca ggaaatgcac ttatggttca
     8581 agccatgctt gaatacggcg caaatcctgc ctcaaagaca tcggaaggct ataccgccct
     8641 cgattttgcc cgcctggcgg gctggcaaaa tgttgccgac ctgctcgaac cgcgacatta
     8701 ggcggacagt tttccgaaaa cgaacacaaa cactttttac agaaagacaa taaaaatgcc
     8761 caaaatcacc gtacttccac acacgacatt atgccccgaa ggcgcggtta tcgaagacgc
     8821 gcccgaaggc aaaaccgtcc ttgacgtgct gctcgaccat gatatcgaag tcgatcacgc
     8881 ctgcgaaaaa tcctgcgcct gcacaacctg ccacgtgatt atccgcaaag gtttcgacag
     8941 cctggaagag ccgaccgaat tggaagaaga cctgctcgat caggcttggg gtttggaagc
     9001 cgattcgcgc ctgagttgtc aggcggttgt cgccggcgag gatttgattg tggaaatccc
     9061 caaatacacc atcaaccacg cgcgagaaga acactgaaaa caggccgcct gaagccggca
     9121 cgcttcagac ggcattgttg cgcggataag gcgcaatcgc ccgaaaacag gcgttcgtac
     9181 aggcggaact ttcgattcta tagtgaatta acaaaaatca ggacaaggcg gcgagccgca
     9241 gacagtacca atagtacggc aaggcgaggc aacgctgtac cggtttaaat ttaattcact
     9301 atatattgat ttttatcggt tttctgacgg aacggattgg tgcggcatcc gaggcggatt
     9361 actcgggcgc gatgcacggg tatttatcgg ttttgcagcc ggaaaaaccg ccggcgggtt
     9421 actttcaggg cggcggtcgg gcggtatgcc ggatagcgtt ccactttcgc ttctatattg
     9481 attttgattg gttttctgac ggaatgatcc gatgcggcat ccgggacggc ttgtgtttct
     9541 tcctgcccgc ctgccggata ttcctgtact tgcacgaaac cgaaagaggt ggcggtgcgg
     9601 cggacaagct cgagatagcg tccttcaagc tccggacagg cggcggacac gctttctgcc
     9661 gtaaccgtga agccgccgcc cgacccggca aggcgttccg caatctgcgt gtagatgcgc
     9721 caacgttggg cgcgcaacat tgccgcatcg caaccggcag ccgctttatc caaggcaatc
     9781 agaccgcgcc tgctccggta gtgaaggcaa accgttactc tggagaggat atgttgcccg
     9841 tccaatattt gatacagttt gcgtatcagc agaatcaggc ggtcaaactc ctccatctcc
     9901 gacagggaat caggatggtc ggaagcggta taaaccagtt tggacaattt tgcggcaaac
     9961 atattgttca tcaatcttcc ttgtcggttg aaaccccgct cttcggggcg gtagaatcag
    10021 atttgtttgg gagggacaac tcctcccaga tcaggacgac acataggctg gtgcttgatg
    10081 tgttgtccgg cgagttgaaa cattcagcca tcctcaaggt gcggcagttt tgccgaaaca
    10141 tattctacac ggcttcaatg ccggacgata aaaggaaatt catatgaaat ggaccgacac
    10201 ccggcgtatc gccgaagaac tctatgacct gcacggcgaa accatcgatc ccagaaccgt
    10261 gcgctttacc caactgcgcg acctgattat ggcattgccc gaatttgacg acgaccccgc
    10321 ccgttgcggc gaacgcatcc tcgaagccgt gcagcaggca tggatagacg aggcggaata
    10381 agtttcggga atgccgtctg aaatgcggcg gtacgcggtt cgtgcttctg tttgcagcgg
    10441 gaatggtttt accagtctcc ttttttcagc ctgtccagtt ggcggcggtc gcgcttggtc
    10501 ggtctgccgt cgggataggc ggaagtgatg cggctgaatt ggtcgagctg tttgcgctct
    10561 tccctcaatg ctgccgtttt tgcgtcttct tcatacagaa gccgcgcctc ggatgccggg
    10621 cggcgttggt ggttcaaacc tttaaccttg attttatagg gaagggaatt gagcgtcagg
    10681 tcgataatat cgccgatgtc tatggtttta ctgtttttga ccttcgagcc gtttacttga
    10741 accctaccca gttcgatgtg cttttgcgca agggaacggg tcttgaaaaa acgtgccgcc
    10801 caaagccatt tgtccagccg catggcggaa gaatcgtgct tgtctttcat acgattttgt
    10861 ttgaaataat tgaatttgtt tcgagtttag cataagatac gccgcctata actagtatat
    10921 atgcactaat ccactgtttt ccatgctgtc cgaacacaaa aagagggtgt ggaaaagccg
    10981 ttttggacaa taaattaact gcggaatatg cacaaatagc gtatgatagc ggcagaatct
    11041 gttgatgaga gcttcattct atgaaacctg tttttttgga ttttgaacaa cccatagccg
    11101 aactgaccaa caaaatcgat gagctgcgtt tcgtccaaga cgagtctgcc gtcgatattt
    11161 cggacgaaat acaccgtttg cagaaaaaaa gcaacgacct gaccaaatcg attttcagca
    11221 aacttacgcc cgcccaggtt tcacaggttt cccggcatcc gcagcgtccc tatactttgg
    11281 attacattga tgcgctgttt actgattttg aagagctgca cggcgaccgc cattttgccg
    11341 acgatcatgc gattgtcggc ggattggcgc gtttcaacgg acaaagcgtg atggtcgtcg
    11401 ggcatcagaa agggcgcgac accaaagaaa aaatccgccg caacttcggt atgccgcgcc
    11461 ccgagggcta ccgcaaagcc ctgcgcctga tgaaaacggc tgagaaattc ggcttgcccg
    11521 tcatgacctt tatcgatacg ccgggcgcgt atcccggcat cggcgcggaa gaacgcgggc
    11581 agtcggaagc catcggcaaa aacctgtacg aactgacgcg cctgcacgtc cccgttttgt
    11641 gtaccgtcat cggcgaaggg ggctcgggcg gtgcgttggc ggtcgccgta ggcgattacg
    11701 tcaatatgct gcaatactcg acctattctg ttatctcccc cgaaggctgc gcttcgattt
    11761 tgtggaaaac cgccgaaaag gcggcggatg cggctcaggc tttgggcatt actgctgacc
    11821 gcctgcaaaa gctggacttg gtcgataccg tcatcaaaga accattgggc ggcgcgcatc
    11881 gggatttcgg gcaaaccatg aaaaacgtaa aagccgtttt ggaaaaacaa ctgcacgaag
    11941 cgcaaagcat cccgcttgcc gatttgcttt cgcgccgttt cgaccgcatt atggcttacg
    12001 gcaaattttc ggaacaataa ttcaggtaga acaagcagca agcagtttgt ctgaaactgc
    12061 ttgctttttc tttatcggga cggaaccgtg ctgactttag atgcgtttga gcaatgcttg
    12121 aaggattgtt ttcctcaagg tctgaatgga aaaaaaacag cagtggcatt aagcggcggc
    12181 ttggattccg tcgttttgct gcatctgctt gtccgcgccg gaaaaaaggg cggttttatt
    12241 ccggatgcat tgcatatcca tcacggcttg agtccccgtg ccgacgattg ggcagatttc
    12301 tgccaaaact attgcgatat gctcggggtg gggctggaaa cggttaaggt ctgcgtggaa
    12361 aaaaacggtt tgggcatcga ggcggcggcg cggcaaaagc gttatgccgc gtttgccgaa
    12421 aaaggctttg acgttttggc gttggcgcac cacagggacg atcaaatcga aacctttatg
    12481 ctggcagtcg ctcgcggcgg cggtttgcgc gctttggcgg ctatgcccac cgtccgccct
    12541 tttggggaaa aaggcatcat ctggcggcct ttgctgcctt tttcgcgcca agacatatgg
    12601 gattatgccc aaaaacacgg tttgccgaat atcgaggacg aaagcaatag cgatacggct
    12661 tatttgcgaa accgcttccg gcaccgtatt ttgcccgaac tttcggcgca gattccccat
    12721 ttcgggcggc atgtactgaa caatgtccgc gctttgcagg aagatttggc tttgttggac
    12781 gaaatcatcg gtcaggactg ccgttgggtc tgtgaggaag gcagtttcga tacggtgcgt
    12841 tggcaggcgt tttccccacg ccggaaaacc catattttgc ggtatttttt gaaggaaaac
    12901 ggcatcccca tgccgaatca gaatgccctt gccgacattg cccgggtttt gacggaggca
    12961 aaaaccggac gttggaactt gcaaggcttt gaattgcatc attatgcagg caggctgttt
    13021 gtgttccgac tggaaaaaac ggataaactg cggtttttga aagacaggca gataagcgga
    13081 aatttaaggg aaatattgac ggggcaggga tttgttttaa aacgtcatcc gtttgggctt
    13141 cctgagcatc ttttggagca ggacggaatt ttgaggacgg tagcggtatc ggatacgttg
    13201 gctgtcggcg gcatccataa ggatgtgaaa aaaatccttc aggggaaacg ggttttgcct
    13261 gtcctgcgcc caatttggcc gcttgttgcc gacagcggaa accgtccatt ggcgttggca
    13321 aactgttgtg cggatttcca atactcggtt tcagacggca ttttgcccgt ccatcctgac
    13381 tttcccattt tattttgata atatcgcaaa cagatttcgg cggcgttcag acgggtattg
    13441 tccggttgca tatttctaaa aggcttgtga agtgaaacac atcagttcga ccaataatga
    13501 acacatccgg cacctgcacc gcctgttgtc gcaaggaaag ttcagacggc aatacgccca
    13561 aaccgttttg gagggcgtgc acctgcttca ggttttcctg caatccggca gaaaaccggt
    13621 cggggtatat attcccgagg gcaaaatgcc gtctgaagaa gtccgcaggc tgagggcggt
    13681 tgtgccggaa ggcaaggttt tttccgtttc agacggcata ttgaaaaaaa tcagcagctt
    13741 gacttgtgcg gatgatgtgc ttgcgctgat tgatattccg gatgcgggtg ctttgcctgc
    13801 cggcggcgac tgtgtggttt tggacggcgt gcaagatccg ggcaatgtcg gcaccgtctt
    13861 acggagtgcg gcggcggcag gggtaggtac ggtcgttttg ggcaggggtt gcgcggacgc
    13921 gtggtcgccc aaggtattgc gcgcggggat gggcgcgcat ttcttgtcgg gcatttatcc
    13981 gcaggcggat ttggaaatat ggttggcgcg ctataaaggc cgtgtgtttg ccaccgcctt
    14041 gcgcgaggaa aagcaggcgg ttttgtacgg cgaagatttg tgcggaccga cagcctgggt
    14101 gtttggcaac gaaggcgcgg gggtcggtaa agcggttttg gacagggcgg acaagtgtgt
    14161 caggattccg atgcacgatg caaccgagtc tttaaatgtc gcgatggcgg cgacaatctg
    14221 cctgtttgaa cagatgcggc agcggtcggc gtattgagga aaagaaatgc cgtctgaaaa
    14281 aatctattac ggcgtattga ttttcttatg tatcgcttct atgctgctgt cgccgttttt
    14341 ttatgcgggt gctttgaagc ccaagaaggc ggcattgcgg aaggacgggc agtggaaact
    14401 catcttattg tccaataccg tggcggcggc ggttttggct tgggtgtggt ggaaatggtt
    14461 ttgacagata ttgctcaaaa tcgtgctaat ggaatccgaa caaataaaga atttggtaaa
    14521 aaatttgtta aatcaacgaa ttaaagtttt gtggaaaaca aaacagctct aagcaaatag
    14581 ggcgtttgtc ggtaaatacg gaagagttgc ggcattatcg ggcatcttta acaagtagtg
    14641 ccgtcttggc aggcaatcgg tttttatggg cagcttgcaa aatcgcggat ataaaattgc
    14701 gaatcggtta aagtgtgggg acgctatgaa aaattgcgaa tttttttatg acccgacaag
    14761 ggcaatctat gatagcggtg cagattactt aactagggaa aaacatagat tagtcgtaat
    14821 tgcaaatagt gcttgggggc tattacttaa tttatcttgt tattatgacg aggttttgga
    14881 aaagcggaaa ataccgttcg gcaaacagga aattgatgac gatatggaca aagtgtccgc
    14941 ccttaagcgg aagtttaaag atatttctga aatcaaagta ggggatggtt gggaataccc
    15001 gttcaattat gagcagggaa tgaaagaatt agatgaagtg ctattgaaat acattccctt
    15061 ttttgaagaa gaacgataaa ggaggttgat atgcgcgtat ctaaaataat tggaagtatg
    15121 ttgcttgtta cagcggttca gaccgtattt tcggcaaatg tttacgcgtg ccgccataat
    15181 ggtaaaacca gttacagcca aactccggga aaacattgta ccaacgcggg tttggggcgg
    15241 gaccgggtgt acagttcggt tagaccggca gtaaaagaca gggcggaaga cgcaggggtc
    15301 ggcgattatt cggacacggt gagggacgaa cacgtccaaa atccgaaagg gaatgcacag
    15361 aaagacggtt cggatgccgg catcaggccg cattgattga aaccgaatca gccatgacgg
    15421 cgttgaataa tagaatttga acgattaggg aactctgatg aaacacatcc acattatcgg
    15481 tatcggcggc acgtttatgg gcgggattgc cgccattgcc aaagaagccg ggtttgaagt
    15541 cagcggttgc gacgcgaaga tgtatccgcc gatgagcacc cagctcgaag ccttgggtat
    15601 aggcgtacac gaaggcttcg acgcggcgca gttggaggaa tttaaagccg acgtttacgt
    15661 catcggcaat gtcgccaagc gcgggatgga tgtggttgag gcgattttga accgcgggct
    15721 gccttatatt tccggtccgc aatggctggc tgaaaacgtg ctgcaccatc attgggtact
    15781 cggtgtggcg gggacgcacg gcaaaacgac caccgcgtcc atgctcgcat gggttttgga
    15841 atatgccgga ctcgcgccgg gcttccttat cggcggcgta ccggaaaact ttagcgtttc
    15901 cgcccgcctg ccgcaaacgc cgcgtcaaga cccgaacagc caatctccgt ttttcgttat
    15961 cgaagccgac gaatacgaca ccgccttttt cgacaaacgc tccaaattcg tacattaccg
    16021 cccgcgtacc gtcgtgttga acaatctgga attcgaccac gccgacatct ttgccgactt
    16081 gggcgcgata cagacccagt tccaccacct cgtgcgcacc gtgccgtctg aaggcttaat
    16141 catctgtaac ggacagcagc aaagcttgca ggatacttta gacaaaggct gctggacgcc
    16201 ggtggagaaa ttcggcacgg aacacggctg gcaggccggc gaagccaatg ccgacggctc
    16261 gttcgacgtg ttactagacg gcaaaacggc cggacgcgtc aaatgggatt tgatgggcag
    16321 gcacaaccgc atgaatgcgc tcgccgtcat tgccgccgcg cgtcatgtcg gtgtcggcat
    16381 tcagacggcc tgcgaagcct tgggcgcgtt taaaaacgtc aaacgccgca tggaaatcaa
    16441 aggcacggca aacggcatca ccgtttacga cgacttcgcc caccacccga ccgccatcga
    16501 aaccaccata gaaggtctgc gtcagcgcgt cggaaacgcc cgcatcctcg ccgtcctcga
    16561 gccgcgctcc aacaccatga aactcggcac gatgaagtcc gccctgcctg taagcctcaa
    16621 agaagccgac caagtgttct gctacgccgg tggcgtggac tggaacgtcg ccgaagccct
    16681 cgcgcctttg ggcggcaggc tgcacgtcgg caaagacttc gatgccttcg ttgccgaaat
    16741 cgtgaaaaac gccgaagcag gcgaccatat tttggtgatg agcaacggcg gtttcggcgg
    16801 aatacacgga aagctgctgg acgctttgag atagcccggg cgatgccgtc tgaaagccct
    16861 tcagacggca tcgtccggct gcgcggcaca aaggcggaaa aaccgtttgc cccgtatttt
    16921 caaacgcgtt acacttgccg ccgctgtttt cagccatttg attacccgca accgccgtca
    16981 ttgcgccggc ggtttgcctg tcagcgtcat tgcgccgctg taaatacgaa agaacacatt
    17041 atgaccgtat cccccgtcgc cttgcgccgt aagaccgagt gcaagcctca tcccaccgcg
    17101 cgctattgga aaaaatgcga tgtcgaagcc ctgttcggac ttcccttcct cgacctcatt
    17161 taccaagccg ccgaaatcca ccgccaaaat ttcaacccgc gcgaaatcca gctttccacg
    17221 ctgttgtcca tcaaaaccgg cggttgtccc gaagactgcg cctattgtcc gcaatcggcg
    17281 caccacaata ccaatctggg caaagagcag atgatggatg tggatgaaat cgtcgaaaaa
    17341 gccaaaatcg ccaaatcgcg cggcgcaagc cggttttgta tgggcgcggc gtggcgcggc
    17401 cctaaaccca aagacgtgga gacggtttcc gcaatcatca aagccgtcaa gggcttgggt
    17461 atggaaacct gcggcacgtt cggtatgctc gaagaaggta tggcggaaga cttgaaagag
    17521 gcgggcttgg attattacaa ccacaacctc gacaccgacc ccgaccgcta caacgacatc
    17581 atccacaccc gccaacacga agaccgaatg gacaccttgg gcaaagtccg caacgccggt
    17641 ttgaaagtct gctgcggcgg catcgtcggg atgaacgaaa cccgcgccga acgtgccggg
    17701 ctgattgcca gtctcgccaa tctcgacccg cagcccgaaa gcgtgccgat taaccggttg
    17761 gtcaaagtgg aaggcacgcc gcttgccgat gccgaagatt tggactggac ggaatttgtc
    17821 cgcaccatcg ccgtggcgcg gattacgatg ccgcaaagtt atgtccggct gtcggcaggg
    17881 cgcagcaata tgcctgaagc aatgcaggcg atgtgcttta tggcgggcgc gaactcgatt
    17941 ttttacggcg acaagctgct gaccacgggc aatcctgatg aggacggcga cagaatcctg
    18001 atggaaaagc tcaacctgta tcccttgcag tttgaaccgg aaggcgaggt cgccgaagtg
    18061 gaaaaagcct ctgggattaa agtggattat tgacgattga aaaatgccgt ctgaaacccg
    18121 gaaaaaggct ttcagacggc atttgtccgg acggcatttc caatatcttt ttaccggcgc
    18181 gtgatgctgc cgtcgggcga gacatccagt ccgttcccct tggggaaatc gctgcggttc
    18241 agataaataa tccgcccgat aacggttttc tcggggtcga ttttggggat tttatcgccg
    18301 acttgagtga tggggataat gttaccggaa acgaaccgcc cctgtttgtc ggtgataatt
    18361 ttgaaaatcg gcgcgatgcc gctgatgccg gaggtgttga ttgcgccgta ggtggcaaag
    18421 ttgccgccgc tgtaggagat gaagcggtcg cggtaaagtt cgacggcgcg agtaacgtgc
    18481 ggcccctgcc cgaatacgac atccgcgccg gaatcgacgg caagccgtgc aaactcgacg
    18541 acgttgcccc tgttttcccc atagaagatt tcggtatcga acggcaggtg ttccgcctgt
    18601 ttcccttccg cgccgccgtg gaacattaca atgacgatgt cggctttctg tttggttttg
    18661 gtaatcagtt ttctaacttt ggcataatcg ttcagtttga cggcggcaag gttgggggcg
    18721 aaggagacga agccgtatct tacgccgttt ttcttcagga tggcggtttc aaacctgttt
    18781 tcgatgcccg aatatttgat gttcaattcg tcaaggttcg ccctttatgc cgtttccgca
    18841 ccgcaaaccg ccggggtcaa gccctcggcg catcctgccg gaacggaatc cccgtgctgc
    18901 cgattgacgg ttcaaacccc gcgcccgttt caaataccgg cgatgtggac ggacaggatg
    18961 cgcctgacga aaagacagcc gataccgttt ccattatcgg cgtgggcgac attatgctcg
    19021 gcagcaatta tccggtcgat tacctgcccg ataccaatat tctgaaaaac gtcgaatctg
    19081 ccttgcaaga cgcggacatt accgtcggca acctcgaagg cacgctgttt gacgaaggcg
    19141 gtacgccgaa aaaatgtgca aacccccaaa atatgctatg cattccgaac gccctccgca
    19201 tacgggcaat accttgccga cgcgggattc gactacctca gcttcgccaa caaccacagc
    19261 aacgacttcg gcgcgcaagg catcacggca acggcggcgg gcggcagctc ttttacatac
    19321 tcaatcgcgc taaagccgct gccgataacg aggccaaaat tgcggaaaat accgccatcg
    19381 cccagataaa tttgtccatc atcagacctt tactgttcag acgagacagc atttgccgca
    19441 cgttttgggg cttatctttc gatttgcgct acgtcgcgca ccgcgccttt gtcggcggaa
    19501 gtcgccatcg cgccgtaagc ccttaatgcg gcggagacgt agcggtcgcg gttttccggt
    19561 ttccacgctt tgctgccgcg tgcttccatt tcggcacggc gcgcggcaag ctcttcatcg
    19621 gaaatgacaa ggtggatgct gcggttgggg atgtcgattt cgacggtatc gccttcgtgt
    19681 accaaaccga tcgcgccacc ttccgccgct tcgggcgagg cgtgtccgat ggacaaacct
    19741 gatgtgccgc cggagaagcg tccgtcggtt aagagagcgc aggctttgcc gaggccttta
    19801 gatttcaggt aggaagtcgg atacagcatt tcctgcatgc ccgggccgcc tttcgggcct
    19861 tcgtagcgga tgatgacgat gtcgccggcg acgatttggt tgcccaaaat gccttcgaca
    19921 gcggcttcct ggctttcaaa cacgcgcgcg cggccggtga atttgaggat gctctcgtcc
    19981 acgcctgcgg tttttaccac gcagccgcgt tcggcgatgt tgccgaacaa gaccgccaaa
    20041 ccgccgtctt gcgagtaggc gtgtgccacg tcgcggatac agcctttttc gcggtcgagg
    20101 tcgagtgttt tccacatacg gttttgcgag aacgcttggg tggtgcgtac gccgccgggc
    20161 gcggctttga agcgttcgat ggcgcgggtg ttttcagggt tggttacgtc ccatttttca
    20221 atcgcgtctt tcagcgtcgg tgcgtggata gtgtgcacgt cggtgtgcag cttgcccgct
    20281 ttgtccaatt ctttcaggat ggcgaagatg ccgccggctc ggtgcacgtc ttccatatag
    20341 tagtcgtggt tgttgggtgc ggttttgcag atgcagggca caacgcggct taagcggtcg
    20401 atgtctgcca ttttgaaatc cacgcccgct tcgttggcaa cggcgagtaa atgcaaaata
    20461 gtgttggtgc tgccgcccat cgcaatatcc atcgtcatag cgttttcaaa cgcttttttg
    20521 gtggcaatgc tgcgcggtaa cacggtttca tcgttttgct cgtaatagcg tttggtgatt
    20581 tcgacaatca tacggccggc ttcgaggaac aattctttgc ggccggcgtg ggtcgccaaa
    20641 tacgaaccgt tgccgggtag ggacagaccg agtgcttcgg tcaggcagtt catcgagttt
    20701 gccgtaaaca tacccgaaca cgagccgcag gtcgggcagg cgttttgttc gacttcttca
    20761 acttgccggt tgctgacatt gtcgtccgcc gattcaatca tcgcgtcaat caagtccaaa
    20821 cggcgttcgg gctggatgtt tgccacgccg ataactttac ctgcttccat cggaccgccg
    20881 gaaacgaaga tggtcgggat gttcaggcgc atcgcggcaa tcagcatgcc cggggtgatt
    20941 ttgtcgcagt tggaaatgca caccagcgcg tcggcgcagt gggcattgac catatattcg
    21001 atggagtcgg caatcaaatc gcggctgggc agggagtaca gcatgccgct gtgtcccata
    21061 gcgatgccgt cgtcgatggc gatggtgttg aattctttgg cgatggcgcc ggctttttcg
    21121 atttcgcggg caaccagctg gcccatattg tgcaggtgga catggccggg cacgaattgg
    21181 gtgaaggagt tggcaacggc gatgatgggc ttgccgaagt cggtttccat cacgccggtg
    21241 gcgcgccaca atgcacgtgc gcccgccata ttgcggccgt gggtggaggt tttggagcgg
    21301 tattctggca tagtgtgttt ccttgtgcct ataccgtctg aaagacaggg ctgtttcaga
    21361 cggtatcggg tacggttttt tagagtggga aaagagggta ttttatacca agtatcggaa
    21421 ttttgcggga ttgaaacggc gtgcggcaaa aaagaaaatc cccgcaggaa tgcggggacg
    21481 ggttcaggcg cgggcaatcg cgacggcttt ggatgcgtcc caaaaatcaa cgggtgcatt
    21541 taatacgggt ttgacgatgc ccgtccgtat ggcgaaatcg ccgaaacctt cgccgatatt
    21601 gcgttctgcc gcccatttgc cgatcaggtc gtccaattcg gcaaggattt cgggcagggt
    21661 gatgttttct ttataaaggc gggggatgcg tacgccttca cggtcgccgc cgatatggag
    21721 gttgtagcgt tcgacggctt tgccgaccag cccgatttcc gccaacattg cccgtccgca
    21781 gccgttgggg cagccggtaa tgcgggtaac gatgtagtcg tccgacgtgc cgtgtttcgc
    21841 cataatctta tccagctcgt cgatgaagtc cggcagcacg cgttcggctt ccgccattgc
    21901 cagcgggcag gtcgggaagg aaacgcacga catcgcattt tcgcgcagtt tgctgacatc
    21961 gttgcggatt aatccgtatg ttcgggcaag ttcttcgatt tttgctttgt ctgcttcggc
    22021 gacatttgcc acgatgaggt tttggttggc ggtaatgcgg aaatcgcctt tgtggatttt
    22081 ggcgatttcc aacacgccgg tcagaagctg tttcccgcct tcgtcaacca aacggccgct
    22141 ttcgatgaaa agggtcaaat gccagttgcc gtctatgcct tttacccagc cgatgcggtc
    22201 gccgcgcccg gtaaatttga acgggcgtat gggttcgaac ggcataccca tacggcgttc
    22261 gacttcggcg cggaagttgt ccaagcccat attttgaatg gtgtagcggg tgcgggcgtt
    22321 tttgcggtcg ctgcggttgc cgaagtcgcg ctgtgtggtt accaccgctt cggcggcctt
    22381 cagcgcgtgt tccggaggta cgaaacccag ttccagtgaa atgttcggat aggttttggt
    22441 gttgccgtgt tccattgaaa gcccgccgcc tgccaaaaca ttaaaaccgg caagctgtcc
    22501 gccgccgtct gaaatggcga caaaatccaa gtcgttgccg tagcagtcca catcatttaa
    22561 gggcgggatg acgactgcgg ttttgaattt gcgcggcaga taggttttgc ccaaaatcgg
    22621 ctcgtcttct tgaaggaagt cgtcggaact ttgaactttt ttgccgtcca cccacacatc
    22681 cagataaccg cgcgtgcgcg gcagcaggtg ttcggaaatc tttttcgcgt attcgtaagc
    22741 ctgccggtgc agttcggact cgatcgggtt ggacgtgcaa agcacgttgc ggttcatatc
    22801 cgccgccgtg gcgatggaat ccaaacccag tttgtgcaag aggcggtgca tcgtctgcaa
    22861 cttggctttc ggcacgccgt gaaattggaa ggtttgccgg ttggtcagcc ggatggagcg
    22921 gtaatgactg ttttcccggg caaatttgtc cagttctatc cattgggacg gtttgatgat
    22981 cccgcccggc agtcggcagc gcaaaagcat aaatttcaaa ggctcgagtt ttgcctcggc
    23041 gcgttcggcg cggatgtcgc ggtcgtcctg ctcatacata ccgtggaagc ggatgagttg
    23101 gaagttgtcg cctttgaagc cgcccgtgag cgggtctttc aaatcgtcca aaatcgtgcc
    23161 gcgtaaaaaa ttgctttcgg ttttcagacg ttcgttgtcg gatagcggtt tttcttgcca
    23221 cgccaaacct tttgtcttgg tctgtacggt cattttgtgt tcctcccgat tatatttaat
    23281 caataaacat cacgctgata gcgtttttct tcgcgcagca tatccaaata ttcttctgcg
    23341 ccctcttcgt ccaaatgtcc tgccccgata atcacatcca gcaaggcggc ttccacgtct
    23401 ttattttctg cggcacgttg ttggacgaaa gcgcggaacg gtgcgacgcc ggtgcccgag
    23461 ccgatcatca caatcggctt gcggctgtct tcgggcagcc tgaagccgtc gttgcgttcc
    23521 acaaacacgc gcaccgtgcc gtcctcttcc agccggtcgg caaggaaacc cgatgcgccg
    23581 cccgctctgg cgcgcccttc gtgttcaaaa cgcaccgcgc cgacggtcag gtgcacttcg
    23641 tcccccactt ccgcctgcga cgaggaaatc gaatacaggc gcggcgcaag cgggcgcagc
    23701 aggccggcga attgttccgc cgtcagtttt gcagggaagc ggtgcagcac atcggcaatc
    23761 ggcgtgcttt gcacaaagcc ttgcaaaacg gcgttgtcgg cagcaatacg gtcgagttcg
    23821 tcatcatcgg cgaacgaggc atagcctttg acaaaggcgg gggtgttttg cgtgagttca
    23881 aaatgggata acagtgcgga ggcaaccggc agggtttttc cgcccgcctg tatttccgtt
    23941 gcctgatcga tgccgagcag gtctaggatt tccctgacca gtgccggatc gttgtcaaac
    24001 caaacgccga gcgcgtcgcc cgggaggtag tgcaaatccg aaccgctcaa atcgatttcg
    24061 atgtggcgca cgtctttatc ggattggcgg gcggtgattt tctgattggc cagcagggcg
    24121 gcgggaaagg gggctgcctt gcagtacctg ccctccgatg ccgtctgaag gtcggcgggg
    24181 ggcgttgcct gcggcgcggg cgttgcccgg ttttttgcgg cttcttcttt taagagtgcg
    24241 gcgatattgt ctgtccaggc gtttgcggag gcggtaaagt ccaaatccgc atcaacgcgt
    24301 tcgagcaggc gtttcgcccc caattcttca aaacgtttgt cgaaatcttt gcccgcccgg
    24361 cagaaattcg gataggaact gtcgcccaaa cccagtacgg caaattggag tttgtccaat
    24421 ttcggggctt ttttgccgtt cagcagtttg tgcagcacga cggcttcttc cggcggttcg
    24481 ccttcgcctt gggtggacgt aaccagcagc aggcggcgtt cgccggcgat gtttttcgcc
    24541 ttatagtctt tcagttcggc gcgactgact tggatgccgg cggcttccag gctgtccgcc
    24601 gctttgtcgg caacggattt cgcattgccg gtttgcgagg cggaaaggac ggttacggaa
    24661 aaaggttctg ccgtcggcaa tgccgtctga agcgcgggca gtcctgcaga tgccccgttt
    24721 cctgcttttg cccaagcgta gccggacagc cacgcccatt gtgccgcgtc cagccccgac
    24781 aggagctgcg tgatttcggg cggcagaggc ggtaatggcg gatttgtgtt ctgcatatcg
    24841 tgttcactca taaaatcata cctgccgcaa cagtgccgta tgtcgcttcg tctatcagga
    24901 taaacgaacc ggcggcggtg ttttccgcat aaggcgttgc cgtaacgggt ttttgaaggt
    24961 tgatgcggac tttggcgatg tcgttcatct tcaaggattc cgcgccggcc tcttgttcca
    25021 gcgtgcggac atccaaaacg ctttcaattt ccccgacttt tgccggcacg gtttgcgtgc
    25081 cgtgcttgag caggtatttg cgcgcggtgt tgagcggacg ttcgtcaaac cagcaaagcg
    25141 tggcttccag atgtttttgc ggggcgagcg gggaattttt atcgacaaaa aggtcgccgc
    25201 gcgaaacatc gatgtcgcgg tccagccgga gggttgccgc ctcgccggca aaagcctgcg
    25261 ccacttcccc tttcggcgtg atgatttcgg acacttcggc ggtcagcccg ttcggttcga
    25321 tgcggacggt ttgcccgacg gcgaccgaac cgcgttcgat gcgcccctga tagcctcgga
    25381 aatcatcggc cttgtcggca tcttggcgga cgaccagttg gacggggaaa taaaaatcgg
    25441 cagcggaacg accggtttcg tccgcccccg gcaggttttc caaaatggac aataagggtt
    25501 cgcctttata ccaaggcata ttgccgccgg ggtaaacgat gttgtcgccc aagagtgcgg
    25561 acaccggtac gaaatgcacg tctttcaaac cgagctgttc ggcaagtcgg cggtatgcct
    25621 ccacaatggc gttgaatttg tcttcgctgt aatccagcag gtccattttg ttgaccgcca
    25681 ccacaatatg cgggcagttg agttggcgga ggatggcgga atggcgtttg gtctgcggca
    25741 gaagctgcaa gggctgcgcg ccgaaatcca gttgggatgc gtcaaccagt acgactgccg
    25801 ccgaagcggt gcttgcgccc gtaaccatat tgcgcgtgta ttgttcgtgc cccggcgtgt
    25861 cggcgatgat gaatttccgt ttcgccgtgg aaaaatagcg gtatgccaca tcgatcgtaa
    25921 tgccctgttc gcgttcggct tccagtccgt cggtcaggat ggagaagtct atggtttctt
    25981 tcaaaccgtt gcttttgccg gattccaagg ttttgatttg gtcggacagc agggctttgc
    26041 tgtcgtagag cagtcgtccg attagggtgc ttttgccgtc atcgacgctg ccggcggtaa
    26101 tgaagcggag cggggtttgg tgttgtgccg tcatattttc ttcctcatat ctgcttaaag
    26161 ggtttttgaa atttagaaat agccttcttt tttgcgtttt tccattgccg cctcgcttgc
    26221 ctgatcgtcc agccgggtcg cgctgcgttc ggaaatgtcg gcaaccgccg tttccctgat
    26281 aatctccgtc ggcgtggacg cggtgctttc taccgggcag gtgcagctga tgtcgccgac
    26341 ggtgcggaag cggacatcaa ggatttcgga ggtttcagac ggcattttcg gcgtaagcgg
    26401 cgtaacgggg accagcagcc ccctgcgtct gaccacttcg cgcctgtggc tgtaataaat
    26461 cggcggcagt tcgaggtttt cgcgggcgat gtattgccag atgtcgagtt ccgtccagtt
    26521 ggaaatcggg aagacgcgca tattttcgcc tttgtgcagc ctggtgttgt acagcgacca
    26581 cagctcgggg cgttgcgcct tcggattcca ttgtccgaac tcgtcgcgga acgagaaaat
    26641 ccgttctttg gcgcgggctt tttcttcgtc gcgccgcgcg ccgcccatca gcgcgtcaaa
    26701 gccgtttgcc tcgatggttt ccaacagcgt aaccgcctgc gccgcattgc gcgaatcggt
    26761 ttctttgcgt aaaactactg tgcctttggc gatggagtct tccacgcgcc ccactatcag
    26821 gcgggcattg agttttgccg cctgcgcgtc gcggaaggca atcacttcgg gataattgtg
    26881 tcccgtgtcg atatgcacca gcgggaaggg cagttttacc ggcctgctgc ccagccggaa
    26941 ggctttgcag gcgagggcga gcaggaccac ggaatctttg ccgccggaaa agagcagggc
    27001 ggggttttcg cattctgccg ccacttcgcg gataatgtgg atggattcgg attccaacca
    27061 gtcgagttgg gcgttgttcg gttcggtttt cgtcatacca tattccttat ttcttctgtc
    27121 tgatatttat gaattatttg tgcagcccgc attctttgct gtttctgcct tcccaccacc
    27181 accgccctgc gcggatgtct tcgcccgcct tgacggggcg ggtgcagggg tcgcagccta
    27241 tgctgggaaa tccttgccgg tacaaatcgt tgtaaggcac attgttggcg aggatgtatg
    27301 cccacacgtc gtgttccgac cagtcgaaaa tcgggttgta tttgccgatg ccccgtccgg
    27361 catcgtattc ggcaaacggc agttccgtgc gtgtggcgga ttgttcgcgg cgttgcccgg
    27421 taagccaggc gtccgcgcct gcaatggcgc ggttgagcgg ttcgattttt cggatgcggc
    27481 agcattcgcg gcgcgcttca acgctgtcgt aaaaggcaaa cctgcctttg ctttccacat
    27541 aatgcagggc atcttcccgt atcggttgga aacgcttgat ttgcatatgc ggataaacac
    27601 gttcaatcct atccaacagg tttaaagttt ccgcgtgcag cagccccgta tccaaagtaa
    27661 aaataccgat attgaggttt tctccggcga taaggtcggt aattaccata tcttccgcag
    27721 caaggctgct ggcaaaccgt gcatcccggt ggctgccggc aatccggtgc aggcgttgtt
    27781 tgagggtttc cgttttttcc gcaagggcgg tttcgctgcc ggatccgata tgcggtatct
    27841 gccacagggc gggtttgagc agtgtcgttt ccatttttcc cgccttatgc cgcccgttgt
    27901 ccggcattca gtccgcccaa tgcgggatac gcctgcccga cccggttttc tccttcgccg
    27961 ttttcaccga accaggcgag tttttcgtgc agccccacca cttcgcctat gacaatcaat
    28021 gccggattcg gcgcggtttc ggcgagttcg gcaaggttgg cgagcgtgcc ggttgcggtt
    28081 ttttgagccg gcaacgtgcc ttggctgatg acggctgccg gcgtgtcggg cgagcgtccg
    28141 tgctgttgca gccgttcggc aatcagggcg gctttgagcg cacccatata aatcaccaag
    28201 gtctggcggc tgcgggcgag ggtctgccat tcgatgtcgg gcgcatccgc cttgcggtgg
    28261 ccggttacga aaaccgcact ttgggcataa tcgcggtgcg tgagcgggat gccggcatag
    28321 gcggtcgcgc cgacggcggc ggtaatgccg gggacgaccg aaaacggaat ctgatggcgt
    28381 gccaaggttt ccaattcttc gccgccgcgt ccgaacacga aagggtctcc gcctttcaaa
    28441 cgcaccacgc gcctgccttc gcgggccagc ctgaccataa gcgcattggt gtcctcttgc
    28501 ggggtgcggt cgccccgggc gcgcttgccg acaaaaatcc gttccgcatc gcggcggacg
    28561 agggacagta tgccgtctga aaccagcgcg tcgtaaagca ccacgtctgc ctgctggatt
    28621 tcctgtagcc ctttgagcgt cagcagcccc gcatcgccgg gacccgcgcc gaccagcgag
    28681 acggagccgc cttgatcatt ttgacgactt tgttccaatt ggcctgccaa ttcccgttcg
    28741 gcaagggtgt tttgccggtt tttgacgagg gcggcgaaac gtccgttaaa ctgcttttcc
    28801 caaaagcggc ggcgttcggt aacggatttc agtttgtcct tgacggcatc gcgccacctt
    28861 cctgaaattt ccgccatatc gcccaaagac ggcggcagca gggcttccag cctttcacgc
    28921 agcagtcggg cgaggacggg cgcgctgccg gagctggaaa cggcaatctg aaccgggttg
    28981 cggtcgataa ccgacgggaa gatgaagctg caatggtcgc ggtcgtccac cacgttgacc
    29041 ggcttttggc agctttcggc aagatggaaa acgcgccggt tgagggcttg gtcgctgctt
    29101 gccgcaatga tgaggaaaac tgtgcggatg tgttcggcac gaaattcttc ggcaagccac
    29161 aggattttgt tttccgccgc caacgcggag agttcggcat tcaggtgttt tgcggcaacc
    29221 ctgacctctg cgcccgcctt cagcagcagg ctgattttgc gtgcggcgac cgcgccgccg
    29281 cctacgacca atacggggcg gccggcgagg ttggcgaaaa tagggaaata attcactggc
    29341 tgactccttt gctgtttgcc cgcaccttgt ttccgatacg gtgcgtcgcg gcatttttgt
    29401 cggaatgcgg gtcattttag acaaaaggat tttcccggtt aaataataaa aaggcatttg
    29461 ttagaagctg aaagctatat gagggcggct gcggatgcgg cggttttcc
//
LOCUS       DAXHNP010000006        29164 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.006, whole genome shotgun sequence.
ACCESSION   DAXHNP010000006 DAXHNP010000000
VERSION     DAXHNP010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 29164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29164
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.006"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            24..1106
                     /gene="mraY"
                     /locus_tag="ACFM5C_000187"
     CDS             24..1106
                     /gene="mraY"
                     /locus_tag="ACFM5C_000187"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFC6067972.1"
                     /translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
                     RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
                     VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIAGLALFYLAANSANNILI
                     VPFFKQIALPLGVAGFLVLSYLTIVGTSNAVNLTDGLDGLAAFPVVLVAAGLAIFAYV
                     SGHYQFSQYLQLPYVAGANEVVIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
                     LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
                     ETQVVVRFWIITIVLVLIGLSTLKIR"
     gene            1221..1493
                     /locus_tag="ACFM5C_000188"
     CDS             1221..1493
                     /locus_tag="ACFM5C_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HFC6067973.1"
                     /translation="MKQTVKWLAAALIALGLNQAVWADDVSDFRENLQAAAQGNAAAQ
                     YNLGAMYYKGRGVRQDLVLAQEWFGKACQNGDQDGCDIYQRLKAGY"
     gene            1583..2920
                     /gene="murD"
                     /locus_tag="ACFM5C_000189"
     CDS             1583..2920
                     /gene="murD"
                     /locus_tag="ACFM5C_000189"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFC6067974.1"
                     /translation="MTLENKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
                     QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
                     DIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKK
                     ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQV
                     LNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHN
                     ATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGAT
                     AAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLN
                     MTDCATLEEAVQTAYAQAEACDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
     gene            3057..4370
                     /locus_tag="ACFM5C_000190"
     CDS             3057..4370
                     /locus_tag="ACFM5C_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004465726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFC6067975.1"
                     /translation="MTGGFLKISEVLVKVGDGVHTLLLDRQIVRDGRKFDAPLLWMVV
                     LMTAFSLLMIYSASVYLASKEGGDQFFYLTRQAGFVVAGLIASGFLWFLCRMRTWRRL
                     VPWIFALSGLLLVVVLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLFTRRE
                     EVLRSMESLGWQSIWRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFGLVLI
                     MVQPDFGSFVVITVIAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQRVVAF
                     LDPWKDPQGAGYQLTHSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIAEEFG
                     FFGMCVLIFCYGWLVVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGVNIGA
                     LPTKGLTLPLMSYGGSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
     gene            4374..5441
                     /gene="murG"
                     /locus_tag="ACFM5C_000191"
     CDS             4374..5441
                     /gene="murG"
                     /locus_tag="ACFM5C_000191"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFC6067976.1"
                     /translation="MGGKTFMLMAGGTGGHIFPALAVADSLRARGHHVIWLGSKDSME
                     ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPFTLYQTVREAQRIIRKHRVECVIGFGG
                     FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
                     VRADISNLPAPAERFQGRKGRLKILVVGGSLGADVLNKTVPQALALLPDNARPQMYHQ
                     SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
                     LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGSLNREKCLKWAENA
                     RTLALPHSADDVAEAAIACAA"
     gene            5596..7005
                     /gene="murC"
                     /locus_tag="ACFM5C_000192"
     CDS             5596..7005
                     /gene="murC"
                     /locus_tag="ACFM5C_000192"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFC6067977.1"
                     /translation="MMKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAAT
                     EHLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAEL
                     MRFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVA
                     EADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI
                     DSEHVRAILPKVSKPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVV
                     LNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL
                     LVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV
                     LTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM
                     GAGSINRVPAALLELSKQI"
     gene            7118..8032
                     /locus_tag="ACFM5C_000193"
     CDS             7118..8032
                     /locus_tag="ACFM5C_000193"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFC6067978.1"
                     /translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
                     KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
                     KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
                     VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRDDTIY
                     QCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFLKDTDGKLYLLEINTLPGMTSH
                     SLVPKSAAVTGVGFADLCIEILKTAHVG"
     gene            8022..8750
                     /locus_tag="ACFM5C_000194"
     CDS             8022..8750
                     /locus_tag="ACFM5C_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HFC6067979.1"
                     /translation="MWDNAEAMERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSL
                     KGNLVYSDKKALGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVV
                     LTERKPVARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAK
                     QGLGIKEMTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYV
                     DMRYKDGFSVRYASDGLPEKESEE"
     gene            8836..10080
                     /gene="ftsA"
                     /locus_tag="ACFM5C_000195"
     CDS             8836..10080
                     /gene="ftsA"
                     /locus_tag="ACFM5C_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFC6067980.1"
                     /translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSRGL
                     RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
                     TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
                     GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
                     YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
                     GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
                     GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
                     VQEREGGGGLLARLQRWIENSF"
     gene            10199..11377
                     /gene="ftsZ"
                     /locus_tag="ACFM5C_000196"
     CDS             10199..11377
                     /gene="ftsZ"
                     /locus_tag="ACFM5C_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFC6067981.1"
                     /translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
                     SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
                     FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
                     DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
                     TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
                     MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
                     VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
                     "
     gene            11515..12825
                     /locus_tag="ACFM5C_000197"
     CDS             11515..12825
                     /locus_tag="ACFM5C_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFC6067982.1"
                     /translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
                     LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
                     PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
                     IVANPATLVGLGDIHQPSALLALFGFVMVVVLGHFRVQGAIIITILTITVIASLMGLN
                     EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
                     VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
                     ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
                     IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
     gene            13450..14325
                     /gene="prpB"
                     /locus_tag="ACFM5C_000198"
     CDS             13450..14325
                     /gene="prpB"
                     /locus_tag="ACFM5C_000198"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HFC6067983.1"
                     /translation="MSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIYL
                     SGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIRN
                     FERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTDA
                     LAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTPL
                     YTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEHL
                     NYHAFEQKLDKLFQK"
     gene            14410..15564
                     /gene="prpC"
                     /locus_tag="ACFM5C_000199"
     CDS             14410..15564
                     /gene="prpC"
                     /locus_tag="ACFM5C_000199"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HFC6067984.1"
                     /translation="MTETTQTPTFKPKKSVALSGVAAGNTALCTVGRTGNDLSYRGYD
                     ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKAKLKSMRGLPIRVIKVLESLPAHTHP
                     MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
                     DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
                     ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
                     DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
                     TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEDR"
     gene            15976..16698
                     /locus_tag="ACFM5C_000200"
     CDS             15976..16698
                     /locus_tag="ACFM5C_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HFC6067985.1"
                     /translation="MDKDKGSYAGIPVQNTKELVWQKIQEIPISECGEPLVSVGNTGR
                     IRVNPVYFSQGIEGAINTVLLRRSVADRLTQVVSLLPEMYGLEIFDGWRPVIVQRALR
                     ENMKQEIEKRHPEYDEVQVREALDCFAADPDRAGMPLPHLTGGSVDVGLFDIKSGKSL
                     DMGSEFDATGHLSYSDALEKEGEYFSSARNLRRILIHAMKEAGFSNLPTEWWHFDYGN
                     QNWAYFTQQSNAVFGAVEEQDT"
     gene            16724..17929
                     /locus_tag="ACFM5C_000201"
     CDS             16724..17929
                     /locus_tag="ACFM5C_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF819 family protein"
                     /protein_id="HFC6067986.1"
                     /translation="MQTLISADNHLLLWAFVMLAAAAAIFIEQNSRLAGKVPGAVLAL
                     LIALIASNLGVIPTDAPVFDAVWSYIVPLAIPLLLFQLDLHALFKESGRMLFIFLISS
                     LGTVIGTLVSFALLKNYIPELDKVAGMISASYTGGGVNFAAMSAKLNPAKDVIAATIV
                     ADNLMMACYFFILIGISSSYWVRKVWGSPYQDKLEQEYHDPSVNKAAEYWKPKSISLQ
                     SIALSLAASILLVAVSFSLSSFLQNHFQSVDGVALKMLTGLISDKYLLLTTFTLAVVL
                     FFRKGIQKLDGSQELGTYCIYLFFVVIGVPASIPLIIKTAPLLFVFTLIIAVLNLLLT
                     LVLGKLFKFSIEEIVLACNANIGGPTTAAALAISKGWRDLVGAILLIGTVGYIIGNYI
                     GSFVYALLS"
     gene            18033..20639
                     /gene="acnD"
                     /locus_tag="ACFM5C_000202"
     CDS             18033..20639
                     /gene="acnD"
                     /locus_tag="ACFM5C_000202"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047456 - 2-methylisocitrate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HFC6067987.1"
                     /translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
                     ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
                     IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNREIEDRRNEDRFHFINWT
                     KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDALGVIS
                     VGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVGA
                     FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
                     TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATADLAGKGLAKPYE
                     EPSDGQMPDGAVIIAAITSCTNTSNPRNVVAAALLARNANRLGLQRKPWVKSSFAPGS
                     KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
                     GNRNFDGRIHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGKEIRLKDIWPA
                     DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
                     GERTLRGMRPLAILPDNITTDHLSPSNAILAVSAAGEYLAKMGLPEEDFNSYATHRGD
                     HLTAQRATFANPKLFNEMVKNEDGSVRQGSFARVEPEGETMRMWEAIETYMNRKQPLI
                     IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPGTNRH
                     TLQLDGTETYDVVGERTPRCDLTLVIHRKNGETVEVPVTCRLDTAEEVLVYEAGGVLQ
                     RFAQDFLEGVVA"
     gene            20726..21172
                     /locus_tag="ACFM5C_000203"
     CDS             20726..21172
                     /locus_tag="ACFM5C_000203"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6067988.1"
                     /translation="MKTQEDEVTKQKIFNHMINNKSFLNFQFWTFAALSAGSFAFLIS
                     AANIDSKDRDLTLEIAIVGYSVSLILNSILCFLIRGIEDDELSVKMLNEFNLDKRTFW
                     IPILATWSFALSTLFLLFTISLVGAITALIMAVLAIISFIKFTKKS"
     gene            21336..22505
                     /gene="prpF"
                     /locus_tag="ACFM5C_000204"
     CDS             21336..22505
                     /gene="prpF"
                     /locus_tag="ACFM5C_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HFC6067989.1"
                     /translation="MPQIKIPAVYYRGGTSKGIFFKRTDLPEAAQQAGEARDKILLRV
                     LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
                     NLTAAVGAFSIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
                     LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTVFLN
                     AADLGYTGKELQDDINNDAAALEKFEKIRAYGALKMGLISDVSEAAARAHTPKVAFVA
                     PAADYTASSGKTVNAADIDLLVRALSMGKLHHAMMGTASVAIATAAAVPGTLVNLAAG
                     GGTRKEVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRVPEDCF"
     gene            22919..24118
                     /locus_tag="ACFM5C_000205"
     CDS             22919..24118
                     /locus_tag="ACFM5C_000205"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6067990.1"
                     /translation="MSDQLILVLNCGSSLLKGAVIDRKSGSVVLSCLGERLTTPEAVI
                     TFSKDGNKRQVPLSGRNCHAGAVGMLLNELEKHGLHDRIKAVGHRIAHGGEKYSESVL
                     IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
                     AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
                     GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGMDVAQVDEMLNKKSGLLGIS
                     ELSNDCRTLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
                     RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
                     AELAGIL"
     gene            24226..24846
                     /locus_tag="ACFM5C_000206"
     CDS             24226..24846
                     /locus_tag="ACFM5C_000206"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6067991.1"
                     /translation="MAQFFAVHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKL
                     GDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQ
                     ATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
                     RERLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
     gene            complement(24973..25416)
                     /locus_tag="ACFM5C_000207"
     CDS             complement(24973..25416)
                     /locus_tag="ACFM5C_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HFC6067992.1"
                     /translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKV
                     VTALVKGGFLHSVRGKGGGLRLAAPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
                     CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
     gene            25590..25958
                     /locus_tag="ACFM5C_000208"
     CDS             25590..25958
                     /locus_tag="ACFM5C_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6067993.1"
                     /translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFS
                     ELETHFREEEAKFAPIWQNVAPELKQRFEKDHARLRQMMASPEYGNAAWNTAFATTLR
                     DHARFEERELFPAAEPFLPA"
     gene            26003..27157
                     /locus_tag="ACFM5C_000209"
     CDS             26003..27157
                     /locus_tag="ACFM5C_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6067994.1"
                     /translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
                     YWHAHEMIWGYAGLVVVAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIAAFIPGWG
                     ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
                     GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
                     MAHGVMPWLSAAFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
                     SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKAVPVAFWLMMAAT
                     AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
     gene            complement(27214..28086)
                     /locus_tag="ACFM5C_000210"
     CDS             complement(27214..28086)
                     /locus_tag="ACFM5C_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFC6067995.1"
                     /translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
                     ALERGVIDRASVAIDADSIGGADLVLIATPVATFPAILTALRPVLPEHTWISDVGSTK
                     SSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
                     ALVEELWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
                     TGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLANILTTDDREALYRYF
                     EEAKTTRDRWLDGN"
     gene            28171..28983
                     /locus_tag="ACFM5C_000211"
     CDS             28171..28983
                     /locus_tag="ACFM5C_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFC6067996.1"
                     /translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGVDWVLLPEY
                     WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEAGKVMNTLL
                     VYGRDGKRTGLYHKMHLFGFSGLGERYAEADTIRAGGEVPHLSAEGVPVAAGICYDVR
                     FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
                     TFGHSMIVDPWGDVLDVLPEGEGVVTADIDANRLNSVRNRLPALKHWVLDAV"
BASE COUNT         6810 a         7334 c         7990 g         7030 t
ORIGIN      
        1 acaaaacaaa aaaaggaagc cccatgtttt tatggctcgc acatttcagc aactggttaa
       61 ccggtctgaa tatttttcaa tacaccacat tccgcgccgt catggcggcg ttgaccgcct
      121 tggcgttttc cctgatgttc ggcccgtgga cgatacgcag gctgaccgcg ctcaaatgcg
      181 ggcaggcagt gcgtaccgac ggcccgcaaa cccacctcgt caaaaacggc acgccgacga
      241 tgggcggttc gctgattctg accgccatta ccgtgtccac cctgttgtgg ggcaactggg
      301 cgaacccgta tatctggatt ctcttgggcg tattgctcgc taccggcgca ctcggttttt
      361 acgacgactg gcgcaaagtc gtctataaag accccaacgg cgtgtccgcc aaattcaaaa
      421 tggtgtggca gtcaagcgtt gccattatcg ccggtttggc attgttttac cttgccgcca
      481 attccgccaa caatattttg attgtcccgt tcttcaaaca aatcgccctg ccgctgggcg
      541 tggccggctt tttggtgttg tcttacctga ccatcgtcgg cacatccaac gccgtcaatc
      601 tcaccgacgg cttggacggc cttgccgcct tccccgtcgt cctcgttgcc gccggactcg
      661 ccattttcgc ctacgtcagc ggacactacc aattttccca atacctgcaa ttaccttacg
      721 ttgccggcgc aaacgaagtg gtgattttct gtaccgccat gtgcggcgcg tgcctcggtt
      781 tcttgtggtt taacgcctat cccgcgcaag tctttatggg cgatgtcggt gcattggcat
      841 tgggtgccgc gctcggtacc gtcgccgtca tcgtccgcca agagtttgtc ctcgtcatta
      901 tgggcggatt atttgtcgta gaagccgtat ccgttatgct tcaggttggc tggtataaga
      961 aaaccaaaaa acgcatcttc ctgatggcgc ccatccatca ccactacgaa caaaaaggct
     1021 ggaaagaaac ccaagtcgtc gtccgctttt ggattattac catcgtcttg gtgttgatcg
     1081 gtttgagtac cctcaaaatc cgctgaacct atgccgtctg aacacctttc agacggcatt
     1141 tgaacgcgca ataaacctgc ggcgacaatc cgcccagccc tatcgttaac ggcggcttat
     1201 actaaaacag aagtaaaacc atgaaacaga cagtcaaatg gcttgccgcc gccctgattg
     1261 ccttgggctt gaaccaagcg gtgtgggcgg atgacgtatc ggattttcgg gaaaacttgc
     1321 aggcggcagc acagggaaat gcagcagccc aatacaattt gggcgcaatg tattacaaag
     1381 gacgcggcgt gcgccaagac cttgtgctcg ctcaagaatg gtttggtaag gcttgtcaaa
     1441 acggagacca agacggctgc gacatttacc aacgcctgaa ggcaggttat tgaacagccc
     1501 gcgatgccgt ctgaaagcgg cttgggcagg ggcggacatc cccccacctg cccaatatga
     1561 tttgttttag gacaaaacca aaatgacgct tgaaaacaaa aaaatcctcg tcgccggact
     1621 cggcggtacg ggtatttcca tgattgccta tctgcgcaaa aacggcgcgg aggtggccgc
     1681 ttatgatgcg gagttgaagc ccgagcgcgt gtcgcaaatc ggtaagatgt ttgacgggct
     1741 ggtgttttac acaggccgtc tgaaagatgc gctggacaac ggtttcgata ttttggcact
     1801 cagccccggc atcagcgagc gtcagccgga tattgaggcg ttcaagcaaa acggcggacg
     1861 cgtgttgggc gacatcgaat tgctggcgga cattgtgaac cgccggggcg acaaggtaat
     1921 tgcgattacc ggcagcaacg gcaaaaccac ggtaacgagc ctggtcggct atctctgtat
     1981 caagtgcggg ctggataccg ttatcgcggg caatatcggc acgccggttt tggaggcgga
     2041 atggcagcgc gaaggcaaaa aggcggacgt gtgggtgttg gagctttcca gcttccaact
     2101 ggaaaacacc gaaagcctgc gcccgacggc ggcgacggta ctgaatattt ccgaagacca
     2161 tctcgaccgc tacgacgact tgctcgacta cgcgcatacc aaagccaaga ttttccgtgg
     2221 cgacggtgtg caggttttga atgcggacga tgcgttctgc cgtgccatga aacgtgccgg
     2281 gcgcgaggta aaatggtttt cgttggaaca cgaagccgat ttttggttgg aacgtgagac
     2341 aggccgcctg aaacaaggca atgaagattt gattgccacg caagatattc cgttgcaagg
     2401 cttgcacaac gccaccaacg tgatggctgc cgttgccttg tgcgaagctg tcggtttgcc
     2461 gcgcgaagca ttgctcgaac acgtcaaaac ctttcaaggc ctgccgcacc gcgtggaaaa
     2521 aatcggcgag aaaaatggcg tggtgtttat cgatgacagc aaaggcacga acgtcggtgc
     2581 gaccgccgcc gcgattgccg gtttgcaaaa tccgctcttc gtgattttag gcggcatggg
     2641 caaagggcag gacttcacgc ctctgcgcga cgcgcttgcc ggcaaggcaa aaggcgtgtt
     2701 cctgatcggc gttgatgcgc cgcaaatccg ccgcgatttg gacggctgcg gtctgaatat
     2761 gaccgactgc gccactttgg aagaagccgt tcagacggca tatgcccaag ccgaagcgtg
     2821 cgatatcgtg ctgctcagcc cggcttgtgc gagttttgat atgtttaaag gctacgcgca
     2881 ccgttcggaa gtgtttatcg aagcgtttaa ggctttgtga tgccgtctga aatgcaaacg
     2941 ccgtcattgt tgggcggcaa gtaaagattt agaataccga tttgggatgt atcgtatgtt
     3001 cggacggcat tgtctgccgt ctgaaatttt tgccctttgc ggcaggtgca aacagaatga
     3061 caggtggttt tttgaagatt tcggaagtat tggtaaaagt gggcgacggt gtccacactc
     3121 tgctgctcga caggcagatt gtgcgcgacg gcaggaaatt cgacgcgccg cttttgtgga
     3181 tggtggtgct gatgacggcg ttcagcctgc tgatgattta ttcggcttct gtgtatttgg
     3241 catcaaaaga aggcggcgat cagtttttct atttgaccag acaggcgggg ttcgtcgttg
     3301 ccggcttgat agcgagcggt tttttatggt ttctttgcag gatgaggaca tggcggcggc
     3361 ttgtgccgtg gatttttgcc ttatccggcc tgttgctggt agtcgtattg attgccgggc
     3421 gcgaaatcaa tggcgcgacc cgttggatac ctttgggtcc gttgaatttc cagccgaccg
     3481 agctgttcaa gctggcggtc atcctttatt tggcaagcct gttcacgcgc cgtgaagaag
     3541 tgttgcgcag catggaaagt ttgggttggc agtcgatttg gcgggggacg gccaatctga
     3601 tcatgtccgc caccaatccg caggcacgtc gtgaaacatt agaaatgtac ggccgtttcc
     3661 gggcgatcat cctgccgatt atgctggtgg cgttcggttt ggtgctgata atggtacagc
     3721 cggatttcgg ttcgtttgtc gtcattaccg tcattgccgt tggaatgctg tttttggcag
     3781 gattgccgtg gaaatatttt ttcgtcctgg taggcagcgt cttgggcggg atggtgctga
     3841 tgattaccgc cgctccctac cgtgtgcagc gggtagtggc atttttggac ccgtggaaag
     3901 acccgcaggg tgccggctac cagcttaccc actctctgat ggcaatcggg cgcggagagt
     3961 ggttcggtat gggtttgggt gcgagtttga gcaaacgcgg ctttctgccg gaagcgcata
     4021 ccgattttat ttttgccatc atcgccgaag aattcggttt cttcggtatg tgcgtgctga
     4081 tattctgtta cggctggctg gtggtgcggg cgttttccat cggcaagcag tcgcgcgatt
     4141 tgggtttgac tttcaacgcc tatatcgctt cgggtatcgg catttggatc ggtatccaaa
     4201 gtttcttcaa tatcggtgtg aacatcggtg ctttgccgac caaaggtctg acgctgccgt
     4261 tgatgtccta tggcggttcg tcagtctttt tcatgctgat cagcatgatg ctgctgttgc
     4321 gtatagatta tgaaaaccgc cggaaaatgc gcggttatcg ggtggagtaa atcatgggcg
     4381 gtaaaacctt tatgctgatg gcgggcggaa cgggcggaca tattttcccc gcgctggcgg
     4441 tggcggattc attgcgcgcg cgcggccatc atgtgatttg gctgggcagc aaggattcga
     4501 tggaagagcg tatcgtgccg caatacggca tacgcttgga aacgctggcg attaaaggcg
     4561 tgcgcggcaa cggcatcaaa cgcaagctga tgctgccgtt tactttgtat caaaccgtcc
     4621 gcgaagcgca gcggattatc cgcaaacacc gtgtcgagtg cgtcatcggc ttcggcggct
     4681 tcgttacctt ccccggcggt ttggcggcga agctattagg cgtgccgatt gtgattcacg
     4741 agcaaaacgc cgtggcaggt ttgtccaacc gccacctgtc gcgctgggcg aagcgggtgt
     4801 tgtacgcttt tccgaaagcg ttcagccacg aaggcggctt ggtcggcaac cccgtccgcg
     4861 ccgatattag caacctgccc gcgcctgccg aacgcttcca agggcgtaaa ggccgtctga
     4921 aaattttggt ggtcggcggc agtttgggcg cggacgtttt gaacaaaacc gtaccgcagg
     4981 cattggcttt gctgcccgac aatgcgcgtc cgcagatgta ccaccaatcg ggacggggca
     5041 agctgggcag cttgcaggcg gattacgacg cgctgggcgt gaaagccgaa tgcgtggaat
     5101 ttattaccga tatggtgtcc gcctaccgcg atgccgattt ggtgatttgc cgtgccggcg
     5161 cgctgacgat tgccgagttg acggcggcgg gattgggtgc gttgttagtg ccgtatcctc
     5221 acgccgttga tgaccatcaa accgccaacg cgcgttttat ggtgcaggca gaagcaggac
     5281 tgctgttgcc gcaaacccag ttgacggcgg aaaaactcgc cgaaatcctc ggcagcctga
     5341 accgcgaaaa atgtctcaaa tgggcggaaa acgcccgtac tttggcattg ccgcacagcg
     5401 cggacgacgt tgccgaagcc gcgattgcgt gtgcggcgta aactgccgaa ccatgccgtc
     5461 tgaaatgccg tccagacagc atggatgttt tttatttcaa tccgctatat atttgtcaga
     5521 aaactatggc gcgcaaacgg tcagcccttt aaaataacgc ctttacgcat cgaaaatcca
     5581 ccggaacgca acattatgat gaaaaatcga gtgaccaaca tccattttgt cggtatcggc
     5641 ggcgtcggca tgagcggcat cgccgaagtc ttgcacaatt tgggttttaa agtttccggt
     5701 tcggatcagg cgcgtaatgc cgctaccgag catttgggca gcctgggcat tcaagtttat
     5761 cccggccata ccgcagaaca cgttaacggt gcggatgtcg tcgttacctc taccgccgtc
     5821 aaaaaagaaa atcccgaagt tgtcgctgcg ttggagcagc aaattcccgt tattccgcgc
     5881 gccctgatgt tggcggagtt gatgcgcttc cgtgacggca tcgccattgc cggcacgcac
     5941 ggcaaaacca cgaccaccag cctgaccgcc tccatcctcg gcgcggcagg acttgacccg
     6001 actttcgtta tcggcggcaa actcaacgcc gcaggcacca acgcccgctt gggcaaaggc
     6061 gaatacatcg ttgccgaagc cgacgagtcg gatgcatcct ttctgcacct gacaccgatt
     6121 atgtccgtcg ttaccaatat cgacgaagac catatggata cctacgggca cagcgtcgaa
     6181 aaactgcatc aggcgtttat cgatttcatc caccgtatgc ccttctacgg caaagccttt
     6241 ttgtgtattg acagcgaaca cgtccgcgcg attttgccca aagtgagcaa accttatgct
     6301 acttacggtt tggacgatac cgccgacatc tacgccaccg acatcgaaaa cgtcggcgcg
     6361 caaatgaaat tcaccgtcca tgttcaaatg aaaggacatg agcaggggtc gtttgaagtc
     6421 gtgctgaata tgcccggcag acacaacgtg ctgaacgcat tggcagccat cggcgtggcg
     6481 ctggaagtcg gcgcatcggt tgaagcgatc caaaaaggct tgctcggctt tgaaggtgtc
     6541 ggccgccgct tccaaaaata cggcgacatc aagttgccaa acggcgggac cgcgctcttg
     6601 gtggacgact acggacacca ccccgtcgaa atggcggcga cccttgccgc cgcacgcggc
     6661 gcgtatccgg aaaaacgttt ggtactcgcc ttccagccgc accgctatac ccgcacgcgc
     6721 gatttgtttg aagactttac caaagtcctc aataccgttg acgcgctggt gctgaccgaa
     6781 gtttatgccg ccggtgaaga gccgattgcc gccgccgatt cccgcgctct tgcccgcgcc
     6841 atccgcgtgt tgggcaaact cgagccgatt tactgcgaaa acgttgccga tctgcccgaa
     6901 atgctgttga acgttttgca ggacggcgac atcgtgttga atatgggtgc gggaagcatc
     6961 aaccgcgtcc ccgccgcgct gctggaattg tcgaaacaga tttgaggcac acccgcctga
     7021 cagacggaac atcatataaa ggtcgtctga aaccgcaaat caggtttcag acgacctctg
     7081 gcaacaagca taaagcaatc aggaaagaac aaaaacaatg cagaattttg gcaaagtggc
     7141 cgtattgatg ggcggttttt ccagcgaacg agaaatctcg ctggacagcg gcaccgccat
     7201 tttgaatgct ttaaaaagca aaggcataga cgcatatgcc ttcgatccta aagaaacccc
     7261 attgtctgaa ttgaaggcac aaggttttca gacggcattc aacatccttc acggtactta
     7321 cggcgaagac ggggcggttc agggtgcatt ggaactgttg ggcattccct ataccggcag
     7381 cggtgtcgcc gcatccgcca tcggcatgga caaataccgc tgcaaactga tttggcaggc
     7441 attgggactg cccgttcccg agttcgccgt cctgcacgac gacactgatt tcgatgccgt
     7501 cgaagaaaaa ttgggcctgc cgatgtttgt gaaaccggcg gccgaaggca gcagcgtagg
     7561 cgtggtaaaa gtcaaaggaa aaggccgtct gaaaagcgtt tacgaagaat tgaaacacct
     7621 tcagggcgaa atcattgccg aacgttttat cggcggcggc gaatattcct gccccgtcct
     7681 gaacggcaaa gggctgcccg gcatacacat cattcccgca accgagtttt acgactacga
     7741 agccaagtac aaccgcgacg acaccattta tcaatgtcct tcggaagatt tgaccgaagc
     7801 cgaagaaagc ctgatgcgcg aactggcggt tcgcggcgcg caggcaatcg gtgcggaagg
     7861 ctgcgtgcgc gtcgatttcc tcaaagatac cgacggcaaa ctctatctgt tggaaatcaa
     7921 caccctgccc ggtatgacga gccatagttt agtaccgaaa tccgctgccg ttacgggcgt
     7981 gggttttgcc gatttatgta ttgaaatttt gaagaccgca catgtgggat aatgccgaag
     8041 cgatggaacg gctgacgcgc tggctgcttg tcatgatggc gatgctgctt gctgcgtccg
     8101 ggctggtttg gttttacaat tcgaatcatc tgcccgtcaa gcaggtgtcg ctgaagggca
     8161 acctggttta ttccgataag aaggcattgg gcagtttggc gaaagaatac atccatggga
     8221 atattttgag gacggacatc aatggcgcac aggaggccta ccgccggtat ccgtggattg
     8281 cgtcggtcat ggtgcgccgc cgttttcccg acacggttga ggtcgtcctg accgagcgca
     8341 agccggtcgc gcgttggggc gaccatgcct tggtggacgg cgaaggcaat gtttttgaag
     8401 cccgcttgga cagacccgga atgccggtat tcagaggcgc ggaaggaacg tctgccgaaa
     8461 tgctccgccg ttatgacgaa ttttcgactg ttttggcaaa acagggtttg ggcatcaaag
     8521 agatgaccta tacggcacgt tcggcgtgga ttgtcgtttt ggacaacggc atcaccgtca
     8581 ggctcggacg ggaaaacgag atgaaacgcc tccggctttt taccgaagcg tggcagcatc
     8641 tgttgcgtaa aaataaaaat cggttatcct atgtggatat gaggtataag gacggatttt
     8701 cagtccgcta tgcttccgac ggtttacccg aaaaagaatc cgaagaatag tgggaacagg
     8761 tatcggacag attacggccg tgccgtctga aacggtgcga cgcaaatttc aatcagtttt
     8821 aagagcagac gaacaatgga acagcagcaa agatacatca gcgtactgga tatcggtacg
     8881 tctaaagtcc tcgcactgat cggggaagtt caagatgacg acaaaatcaa catcgtcggt
     8941 ttggggcagg ctccttcacg gggcttgcgc gcgggcatgg taaccaatat cgatgccacc
     9001 gtccaagcca tcaggcaggc ggtcaatgat gccgagctga tggcggatac caaaattacc
     9061 cacgttacca caggtatcgc aggcaaccac atccgcagtc tcaattcgca aggtgtggtt
     9121 aaaattaaag acggggaagt cacgcaggca gacatcgacc gcgccattga aacggcaaag
     9181 gcaatcaata tcccgcccga tcaaaaaatt ctcgatgccg tggttcaaga ctacattatc
     9241 gacacccaac ttggcgtgag ggagcccatc ggtatgagcg gtgtgcgtct ggatacgcgg
     9301 gtgcacatca ttaccggtgc aagtacggca gtgcagaatg tccaaaaatg tatcgagcgg
     9361 tgcggtttga aaagcgatca gattatgctt cagccgttgg caagcgggca ggcggtgctg
     9421 actgaagatg aaaaagacct cggtgtatgc gtcatcgaca ttggtggcgg aacgaccgat
     9481 attgccgttt atatgaacgg cgccatccgc catacgtccg tcattccggc cggtggtaat
     9541 ctgattacca aagatttgtc caaatcgttg agaacacctc tcgatgccgc cgagtacatt
     9601 aaaatccatt atggcgtggc atcatgcgat acggaaggct tgggtgagat gattgaagtt
     9661 ccgggcgtgg gtgaccggac atcgcgtcag gtttccagta aggttttggc agcaatcatc
     9721 agtgcacgta ttcaggagat ttttggcgta gtgctgggcg agctgcaaaa atcgggtttc
     9781 cccaaagaag tgctgaatgc gggtatcgtt ctgaccggcg gtgtgtccat gatgaccggg
     9841 attgtggaat ttgccgaaaa aatcttcgat ttgcctgtac gcaccggtgc accccaagaa
     9901 atgggcggtt tgtccgaccg cgtccgcaca ccgcgttttt ctaccgctat cgggctgctt
     9961 catgcagcat gcaagctgga aggaaacttg ccgcagccgg aaaacggtgc agtgcaagag
    10021 agggaagggg gcggcggttt gttggcaaga ttgcaacggt ggattgaaaa cagcttctga
    10081 acaggtggat tgccgtttga caggtgagaa gtattttgcc agcagcaaga tacttcttat
    10141 ataatgaata ataatttatt taaaccgtcc tctgaatggg gcgagcagga gtttttgaat
    10201 ggaatttgtt tacgacgtgg cagaatcggc agtcagccct gcggtgatta aagtaatcgg
    10261 cttgggcggc ggcggttgca atgcaatcaa taacatggtt gccaacaatg tgcgcggtgt
    10321 ggagtttatc agtgccaata cggatgcgca gtctctggca aaaaaccatg cggcgaagag
    10381 aatccagttg ggtacgaatc tgacacgcgg tttgggcgcg ggcgcgaatc ccgatatcgg
    10441 ccgtgcggca gcccaggaag accgggaagc cattgaagaa gccattcgcg gtgcgaatat
    10501 gctgtttatc acgaccggta tgggcggcgg taccggtacc ggttccgcgc cggttgttgc
    10561 tgagattgcc aagtctttgg gcattctgac cgttgccgtg gttacccgac cgttcgcata
    10621 tgaaggtaag cgcgtccatg tcgcacaggc agggttggaa cagttgaaag aacacgtcga
    10681 ttcgctgatc atcatcccga acgacaaact gatgactgca ttgggtgaag acgtaacgat
    10741 gcgcgaagcc ttccgtgccg ccgacaatgt attgcgcgat gcggtcgcag gcatttccga
    10801 agtggtaact tgcccgagcg aaatcatcaa cctcgacttt gccgacgtga aaaccgtgat
    10861 gagcaaccgc ggtatcgcta tgatgggttc gggttatgcc caaggtatcg accgtgcgcg
    10921 tatggcgacc gaccaggcca tttccagtcc gctgctggac gatgtaacct tggacggagc
    10981 gcgcggtgtg ctggtcaata ttacgactgc tccgggttgc ttgaaaatgt ccgagttgtc
    11041 cgaagtcatg aaaatcgtca accaaagcgc gcatcccgat ttggaatgca aattcggtgc
    11101 ggctgaagac gagaccatga gcgaagatgc catccggatt accattatcg ctaccggtct
    11161 gaaagaaaaa ggcgcggtcg attttgttcc ggcaagggag gtagaagcgg ttgccccgtc
    11221 caaacaggag caaagccaca atgtcgaagg tatgatccgc accaatcgcg gtatccgcac
    11281 gatgaacctt accgctgcgg atttcgacaa tcagtccgta cttgacgact ttgaaatccc
    11341 tgctattttg cgtcgtcaac acaattcaga caaataatgt gctgtttgcc cgtaaacctg
    11401 ctgcctcccg aatcggtttg tccggtttgg gaggtatgtt tttcaagatg ttgcaatttc
    11461 gtacggtttg cggtcggcgg attcagattt ttccacttga tacagacttc agatatggac
    11521 acttcaaaac aaacactgtt ggacgggatt tttaagctga aggcaaacgg tacgacggtg
    11581 cgtaccgagt tgatggcggg tttgacaact tttttgacga tgtgctacat cgttatcgtc
    11641 aaccctctga ttttgggcga gaccggcatg gatatggggg cggtattcgt cgctacctgt
    11701 atcgcgtctg ccatcggctg ttttgttatg ggttttgtcg gcaactatcc gattgcactc
    11761 gcaccgggga tggggctgaa tgcctatttc acctttgccg tcgttaaggg tatgggcgtg
    11821 ccttggcagg ttgcgttggg tgcggtgttc atctccggtc tgatttttat cctgttcagc
    11881 ttttttaaag tcagggaaat gctggtcaac gcactgccta tgggtttgaa aatgtcgatt
    11941 gctgccggta tcggtttgtt tttggcactg atttccctga aaggcgcagg cattatcgtt
    12001 gccaatccgg caaccttggt cggcttgggc gatattcatc agcccagcgc actgttggca
    12061 ttgttcggtt ttgtcatggt ggtcgtattg gggcatttcc gcgttcaagg cgcaatcatc
    12121 atcaccattc tgacgattac cgtcattgcc agcctgatgg gtttgaatga atttcacggc
    12181 atcatcggcg aagtaccgag cattgcgccg acttttatgc agatggattt tgaaggcctg
    12241 tttaccgtca gcatggtcag tgtgattttc gtcttcttct tggtcgatct atttgacagt
    12301 accggaacgc tggtcggcat atcccaccgt gccgggctgc tggtggacgg taagctgccc
    12361 cgcctgaaac gcgcactgct tgcagactct accgccattg tggcaggtgc ggctttgggt
    12421 acttcttcca ccacgcctta tgtggaaagc gcggcgggcg tatcggcagg cggacggacc
    12481 ggcctgacgg cggttaccgt cggcgtattg atgctcgcct gcctgatgtt ttcacctttg
    12541 gcgaaaagtg ttcccgcttt tgccaccgcg cccgccctgc tttatgtcgg cacgcagatg
    12601 ctccgcagtg cgagggatat tgattgggac gatatgacgg aagccgcacc cgcattcctg
    12661 accattgtct tcatgccgtt tacctattcg attgcagacg gcatcgcctt cggcttcatc
    12721 agctatgccg tggttaaact tttatgccgc cgcaccaaag acgttccgcc tatggtatgg
    12781 attgttgccg tattgtgggc actgaaattc tggtatttgg gctgattgat tcgatattaa
    12841 aaatgccgtc tgaaaggttt tcagacggca ttttgtttgc cgatatattt aatttttatt
    12901 aaattatata aaaatcaaat agataataaa ctacatcaga ttacttaaaa ataatacatt
    12961 gtttttatgt ataaaatatt ttataaggtt tcaggatttt gattatcgaa aatttttctt
    13021 gatttcctga caattttatt gaaacaaata attcaaaatt aatctagttt aatcatggaa
    13081 ttaaaataaa atattaaaat tatgtaatga gtctccttaa aaatgtttga cattttcagt
    13141 cttgtgtttt agattagcga aaaataaaac tacacaatac tacaaaggaa cattactatg
    13201 aaaccaattc agatgttttc cccttttctg aataatcccc ttgttttctt cttgtctgcg
    13261 gttttgccgc ataattccga acggtctgct gtttttcttt gattcgtttt aaatatcaat
    13321 aagataattg ttctcatata tttttaatga ttggattggg atgcccgacg cgtcggatgg
    13381 ctgtgttttg ccgtccgaat gtgatggaag cctgtccata ctgaaaaaag tctataaagg
    13441 agaaatatga tgagtcaaca ctctgccgga gcacgtttcc gccaagccgt gaaagaatcg
    13501 aatccgcttg ccgtcgccgg ttgcgtcaat gcttattttg cacgattggc cacccaaagc
    13561 ggtttcaaag ccatctatct gtccggcggc ggcgtggcag cctgttcttg cggtatccct
    13621 gatttgggca ttaccacaat ggaagatgtg ctgatcgacg cacgacgcat tacggacaac
    13681 gtggatacgc ctctgctggt ggacatcgat gtgggttggg gcggtgcatt caatattgcc
    13741 cgtaccattc gcaactttga acgcgccggt gttgcagcgg ttcacatcga agatcaggta
    13801 gcgcaaaaac gctgcggcca ccgtccgaac aaagccattg tatctaaaga tgaaatggtc
    13861 gaccgtatca aagctgccgt agatgcgcgc gttgatgaga acttcgtgat tatggcgcgt
    13921 accgatgcgc tggcggtaga aggtttggat gccgctatcg aacgcgccca agcttgtgtc
    13981 gaagccggtg cggacatgat tttccctgaa gccatgaccg atttgaacat gtaccgccaa
    14041 tttgcagatg cggtgaaagt gcccgtgttg gcgaacatta ccgagtttgg ttccactccg
    14101 ctttataccc aaagcgagct ggctgaaaac ggcgtgtcgc tggtgctgta tccgctgtca
    14161 tcgttccgtg cagcaagcaa agccgctctg aatgtttacg aagcgattat gcgcgatggc
    14221 actcaggcgg cggtggtgga cagtatgcaa acccgtgccg agctgtacga gcatctgaac
    14281 tatcatgcct tcgagcaaaa actggataaa ttgtttcaaa aatgatttac cgctttcaga
    14341 cggccttcca atctatccgc atcggccgtc tgaaaattga aaatccataa aaaacaaagg
    14401 agaaatacga tgactgaaac tactcaaacc ccgactttca aacctaaaaa atccgttgcg
    14461 ctttccggcg ttgcggcggg taatacagca ttgtgtaccg tcggccgtac cggcaacgat
    14521 ttgagctatc gcggttacga catcttggat ttggcacaaa aatgcgagtt tgaagaagtc
    14581 gcccacctgc tgattcacgg tcatttgccc aacaaattcg agctggccgc ttataaagcc
    14641 aagctcaaat ccatgcgcgg cctgcctatc cgtgtgatta aagttttgga aagcctacct
    14701 gcacataccc atccgatgga tgtgatgcgt accggcgtat ccatgctggg ctgcgttcat
    14761 cctgaacgtg aaagccatcc ggaaagcgaa gcgcgcgaca tcgccgacaa actgatcgcc
    14821 agcctcggca gcatcctctt gtactggtat caatattcgc acaacggcaa acgcattgag
    14881 gttgaaagcg acgaagagac catcggcggt catttcctgc aactgttgca cggcaaacgc
    14941 ccaagcgaat cccacatcaa agccatgcac gtttcactga ttctgtatgc cgaacacgag
    15001 ttcaacgctt ctaccttcac cgcccgcgtg attgccggta caggctctga tatgtactcc
    15061 agcattaccg gagcaatcgg cgcgttgaaa ggtccgaaac acggcggcgc gaacgaagtg
    15121 gcttacgata ttcaaaaacg ctaccgcaat gccgacgaag ccgaagccga catccgcgaa
    15181 cgcatcggcc gcaaagaaat cgtgatcggt ttcggtcatc cggtgtacac catctccgac
    15241 cctcgcaacg ttgtcattaa agaagtggca cgcggtttga gcaaagaaac cggcgatatg
    15301 cgcctctttg acattgccga acgtttggaa agcgtgatgt gggaagagaa aaaaatgttc
    15361 ccgaatctgg actggttctc cgccgtttcc tatcaaaaat tgggcgtacc gaccgctatg
    15421 ttcacaccgc tgttcgtgat ttctcgtaca accggttgga gcgcacacgt tctcgagcaa
    15481 cgcaaagacg gcaaaatcat ccgtccgagc gcgaactaca cgggccctga agatttggcg
    15541 tttgtggaga ttgaagaccg ctaatacgcg taacagcagg gtgggccgcc agcccgcccc
    15601 atctcgaaat gccgtttgaa aacaatgaat aaatgatgtt ttcgtttttc gatggcctag
    15661 tgcagtatgc gagagagagc cggccgtttg gaaaacatgc tgctctgctg tcgtcattcc
    15721 catacaggca gaaattcaaa agttgaaatg ttctgctgta aagagtgctg aaagatttaa
    15781 gtttggattt ccgtctatac gggaatgatg gtagcggagc agcaattttt ttcataccgc
    15841 gaatagattt cagataacaa gcaataaaac agaatttatg gtttcagacg gcctgaaggt
    15901 ccgaatcaac aggccgtctg aaaaaagaaa tttaatgaat ttattggcat actaattatt
    15961 aatgcggaac atttgatgga taaggacaag gggtcttatg ctggtattcc cgtacaaaat
    16021 accaaagagt tagtttggca gaaaatacaa gaaataccta tttctgaatg tggggaaccg
    16081 ttggtcagtg ttggtaatac cggacgcatt cgtgtcaatc ctgtttattt ttcccagggt
    16141 attgaaggtg caataaatac tgttttattg cgtagaagtg ttgctgatag gctgactcag
    16201 gttgtctctt tgctgccaga aatgtacgga ttggaaattt ttgatggttg gcgtcctgtc
    16261 atagtgcaaa gagcattacg agaaaatatg aagcaagaaa ttgaaaaacg ccatccggaa
    16321 tatgatgaag ttcaagttag agaagcactg gactgttttg ctgctgatcc agatcgggca
    16381 ggaatgcctc tgccccattt gacaggcgga tctgttgatg tcggattgtt tgatataaaa
    16441 agtggcaaaa gtttggatat gggaagtgag tttgatgcaa ccggacattt atcttatagc
    16501 gatgctttag agaaagaagg tgagtatttc tcctctgctc gtaatttacg ccggattttg
    16561 attcatgcga tgaaagaggc aggatttagt aatttgccaa ccgaatggtg gcatttcgat
    16621 tatggcaacc aaaattgggc ttattttacc caacaaagca acgcagtttt tggggcggta
    16681 gaagagcagg atacttaaat taaaataaaa attgggagga aaaatgcaaa ctttaatttc
    16741 agcagataat catttgctgc tgtgggcttt tgttatgtta gctgccgctg ctgcgatttt
    16801 tattgagcaa aacagtcgct tggctgggaa agtccctggt gcagtattag ctttattgat
    16861 tgcgttgatt gcttctaatt tgggtgttat tccgacggat gctccagtat ttgatgctgt
    16921 atggtcttat attgtacctc ttgctattcc gttgttattg tttcaattag atcttcatgc
    16981 tctatttaag gaaagtggac gtatgctgtt tattttcctg attagttcac tagggacggt
    17041 cattggaacg cttgtctcat ttgcactatt gaaaaactat attcctgaac tagataaggt
    17101 agctggcatg atttcagcat cttatacggg aggtggtgtt aattttgcag ctatgtcagc
    17161 taagcttaac cctgctaaag atgttattgc agcaacaatt gttgctgata atttgatgat
    17221 ggcttgttac ttttttattt tgattggtat ctcttcctca tattgggtca gaaaagtttg
    17281 gggaagtcca tatcaggata aattggagca ggaatatcat gatccgagtg tgaataaggc
    17341 tgccgagtat tggaaaccta aatccatttc gctacagagt atagccttat ctttggctgc
    17401 ctcgattttg ttggtcgcag tttcattctc attatccagt tttttgcaaa atcattttca
    17461 aagtgttgat ggtgttgcat taaaaatgct gacaggttta attagtgaca aatatttgct
    17521 gttaacgaca tttacattgg cagttgtttt atttttccgt aaaggcattc aaaaactaga
    17581 tggcagtcaa gaattaggga catattgtat ttatctgttt tttgttgtga ttggtgttcc
    17641 tgcctctata ccgttaatta ttaaaacagc accattactc tttgttttta ctttgattat
    17701 tgcggtattg aatttgttac tgacgttagt gttaggcaag ctgttcaaat tcagtattga
    17761 agaaattgta ttggcttgta atgccaatat tggagggccg actactgcag cagccttagc
    17821 catcagtaaa ggttggcgtg atttagtcgg tgcaattttg ttaattggta ctgtaggcta
    17881 cattatcggt aactatatag gttcgtttgt atatgcccta ttgagctgaa gactaatcta
    17941 acaatccatg aaccttttca gacgaccccc ttcaaaaaac gtcgtctgaa accccaaacc
    18001 acaagaaaaa tagatccaca ggagaactga acatggctgc caaccaacgt taccgcaaac
    18061 cgctacccgg tacggatttg gaatactacg acgcgcgtgc ggcgtgtgag gacatcaaac
    18121 ccggctctta cgacaagctg ccttatacaa gccgtatctt ggctgagaac ttggtcaacc
    18181 gcgcagacaa agtcgacctg ccgacgctgc aaagctggct gggccagttg atagaaggga
    18241 agcaggaaat cgactttccg tggtatcccg cgcgggtggt gtgccacgat attctggggc
    18301 agaccgcgct ggtggatttg gcgggcttgc gcgatgcgat tgccgaaaaa ggcggcgatc
    18361 ctgccaaagt gaatccggtg gtgcaaaccc agcttatcgt cgaccactct ctggcggtgg
    18421 agtgcggcgg ttacgatcct gatgccttcc gcaaaaaccg cgaaatcgaa gaccggcgca
    18481 acgaagaccg tttccacttc atcaactgga caaaaaccgc atttgaaaat gtggacgtga
    18541 ttccggcggg caacggcatt atgcaccaaa tcaatctgga aaaaatgtcg cccgtcgtcc
    18601 aagtcaaaaa cggcgtggct ttccccgata cctgcgtcgg cacggattcg cacacgccac
    18661 acgtcgatgc gctgggcgtg atttccgtag gcgtgggcgg tttggaagcc gaaaccgtaa
    18721 tgttaggccg tgcatccatg atgcgtctgc ctgatattgt cggcgttgag ttgactggca
    18781 aacgtcaacc tggcattact gccaccgaca tcgtgttggc actgaccgaa ttcttgcgta
    18841 aagagcgcgt ggttggcgca tttgtcgaat tcttcggcga gggcgcaaga agcctgtcta
    18901 tcggcgaccg agccactatt tccaacatga cccctgagtt cggcgcgact gccgcgatgt
    18961 tcgctattga tgagcaaacc attgattatt tgaaactgac aggccgcgac gacgcgcaag
    19021 tgaaattggt ggaaacctac gccaaaaccg caggcttgtg ggcagatgcc ttgaaaaccg
    19081 ccgtttatcc tcgcgtattg aaatttgatt taagcagcgt aacgcgcaac atggcaggcc
    19141 caagtaaccc gcatgcccgt tttgcgactg ccgatttggc cggcaaaggc ttggctaaac
    19201 cttatgaaga gccttcagac ggccaaatgc ctgacggtgc agtgattatt gccgcgatta
    19261 cttcctgtac caatacttcc aatccgcgca acgttgtcgc cgccgcgctg ttggcacgca
    19321 atgccaaccg cctcggcttg caacgtaaac cttgggtgaa atcttcgttt gccccgggtt
    19381 caaaagtagc cgaaatctat ttgaaagaag caggcctact gcctgaaatg gaaaaactcg
    19441 gcttcggtat cgttgccttc gcatgtacca cctgtaacgg catgagcggt gcgctggatc
    19501 cgaaaatcca aaaagaaatc atcgaccgcg atttgtacgc caccgccgta ttatcaggca
    19561 accgcaactt cgacggccgt atccacccgt atgcgaaaca ggctttcctc gcttcgcctc
    19621 cgttggtcgt tgcctacgcg ctggcaggca gtatccgttt cgatattgaa aacgacgtac
    19681 tcggcgttgc agacggcaag gaaatccgcc tgaaagacat ttggcctgcc gatgaagaaa
    19741 tcgatgccgt cgttgccgaa tatgtgaaac cgcagcagtt ccgcgatgtg tatgtaccga
    19801 tgttcgacac cggcacagcg caaaaagcac ccagtccgct gtacgattgg cgtccgatgt
    19861 ccacctacat ccgccgtccg ccttactggg aaggcgcgct ggcaggggaa cgcacattaa
    19921 gaggtatgcg tccgctggcg attttgcccg acaacatcac caccgaccac ctctcgccgt
    19981 ccaatgcgat tttggccgtc agtgccgcag gcgagtattt ggcgaaaatg ggtttgcctg
    20041 aagaagactt caactcttac gcaacccacc gcggcgacca cttgaccgcc caacgcgcta
    20101 ccttcgccaa tccgaaactg tttaacgaaa tggtgaaaaa cgaagacggc agcgtgcgcc
    20161 aaggctcgtt cgctcgcgtc gaacccgaag gcgaaaccat gcgcatgtgg gaagccatcg
    20221 aaacctatat gaaccgcaaa cagccgctca tcatcattgc cggtgcggac tacggtcaag
    20281 gctcaagccg cgactgggct gcaaaaggcg tacgcctcgc cggcgtggaa gcgattgttg
    20341 ccgaaggctt cgagcgtatc caccgcacca acttgatcgg tatgggcgtg ttgccgttgc
    20401 agttcaaacc gggtaccaac cgccataccc tgcaactgga cggtacggaa acctacgacg
    20461 tggtcggcga acgtacaccg cgctgcgacc tgaccctcgt gattcaccgt aaaaacggcg
    20521 aaaccgttga agttcccgtt acctgccgcc tcgataccgc agaggaagtg ctggtgtacg
    20581 aagccggcgg cgtgctgcaa cggtttgcac aagacttttt agaaggtgtg gtagcataaa
    20641 ggtagacggt cttttttatg atttatgaga agaccgtttg aaaattattt atggttaaat
    20701 ttttaattta aattaaacag taaatatgaa gacacaagaa gatgaggtaa ctaagcagaa
    20761 aatttttaat catatgatta ataataaatc atttttaaat ttccagtttt ggacatttgc
    20821 tgctttgagt gcaggttcat ttgcctttct aataagtgca gcaaatatag attctaaaga
    20881 tagagacttg acgcttgaaa tagccattgt tggatattca gtaagtttaa tattaaattc
    20941 catactatgt tttttaataa gaggcataga agacgatgag ttatcggtta aaatgttaaa
    21001 tgaatttaat ttggataagc gtactttttg gattcccatt ctagcaacgt ggagttttgc
    21061 gctttcgaca cttttcttat tgtttaccat tagtctagta ggagcaatta ctgctcttat
    21121 aatggctgtt ttagcaataa ttagttttat aaaatttaca aaaaaatcat agatttttac
    21181 aatttgaagt ggtgcgtaaa tcgggcattg atgcccgaca cagaagttgt aggttgagtt
    21241 aagccccggc attttgctaa atccaacggt tttttcgggt ttgcaaccca acctacctct
    21301 gctgctaatc tgcatcatac aaaggagaac tcgaaatgcc gcaaattaaa atccccgccg
    21361 tttactaccg cggcggtaca tctaaaggca ttttcttcaa acgcaccgac ctgcccgaag
    21421 cggcgcaaca agcaggcgag gcacgcgaca aaatcctgtt gcgcgtactc ggcagcccgg
    21481 atccctacgg caagcagata gacggtttgg gcaacgccag ttcgtccacc agcaaagccg
    21541 tgattttgga caagtccgaa cgcgccgatc acgatgtcga ttaccttttc gggcaagttt
    21601 ccatcgacaa accttttgtc gattggagcg gcaactgcgg caacctcacc gctgccgtgg
    21661 gcgcattctc catcgaacag ggcttggtcg ataaaggcaa gattccttca gacggcatct
    21721 gcacggtcaa aatctggcag aaaaacatcg gcaaaaccat tattgcccat gtaccgatgc
    21781 aaaacggcgc agttttggaa acaggcgatt ttgagctcga cggcgtaacg ttcccggcag
    21841 ccgaagtaca aatcgaattt cttgatccag ccgacggcga aggcagtatg ttcccaaccg
    21901 gcaatttggt cgatgaaatt gatgtgccga atataggccg tttgaaagcc acgctcatca
    21961 acgcgggcat tccgaccgtt ttcttgaatg ccgccgactt gggctacaca ggcaaagagt
    22021 tgcaagacga catcaacaac gatgccgcgg ctttggaaaa attcgagaaa atccgcgctt
    22081 acggtgcgct gaaaatgggt ctgatcagcg acgtatccga agctgccgct cgcgcgcaca
    22141 cgccgaaagt cgccttcgtc gcgcccgccg ccgattacac cgcctccagt ggcaaaaccg
    22201 tgaacgccgc cgacatcgat ttgctggtac gcgccctgag catgggcaaa ctgcaccacg
    22261 cgatgatggg taccgcctct gttgccattg cgaccgccgc cgccgtaccc ggtacgctgg
    22321 tcaaccttgc cgcaggcggc ggaacgcgta aagaagtgcg cttcgggcat ccttccggca
    22381 cattgcgcgt cggtgcagcc gccgaatgtc aggacggaca atggacggcc accaaagcgg
    22441 tcatgagccg tagcgcacgc gtgatgatgg aaggttgggt cagggtgcct gaggattgtt
    22501 tttaaattga cgtagcatgg gtttgcccgc gagccataaa aaggtcgtct gaaaaacaag
    22561 taaacatcaa atcactgacc attcctttcc cttgccctgt ggcggaaggc ggcaaatcac
    22621 aaggaagaac acggaaaccc cgataaaaga cagcttcccg tattaccgtc attcccgcgc
    22681 aggcgggaat ccagacctgt caatatggag gattggcagg ggaaaacagg tttcgtgagt
    22741 tctacattct ggattcccgc cacagcctgt cctcgcgtag gcggggacgg aataacgata
    22801 gaaaatgcgg catatgcttt gcccaaagag gccgtctgaa acacactccg cccaacgccc
    22861 atcctttttc agacgacccc acaccaaaaa acaaccacaa actacaagga gaaacatcat
    22921 gtccgaccaa ctcattcttg ttctgaactg cggcagttca ttgctcaaag gtgccgttat
    22981 cgaccgcaaa agcggcagcg tcgtcctaag ctgcctcggc gaacgcctga ccacgcccga
    23041 agccgtcatt acgttcagca aagacggcaa caaacgccaa gttcccctga gcggccgcaa
    23101 ctgccatgcc ggcgcggtgg gtatgctgct gaacgaactg gaaaaacacg gactgcacga
    23161 ccgcatcaaa gccgtcggcc accgcatcgc ccacggcggc gaaaaataca gcgagtctgt
    23221 tttgatcgac caggccgtaa tggacgaact caatgcctgc attccgcttg cgccgctgca
    23281 caaccccgcc aacatcagcg gcatccttgc cgcacaggaa catttccccg gtctgcccaa
    23341 tgtcggcgtg atggatactt cgttccacca aaccatgccg gagcgtgcct acacttatgc
    23401 cgtgccgcgc gagttgcgta aaaaatacgc tttccgccgc tacggtttcc acggcaccag
    23461 tatgcgttac gttgcccctg aagccgcacg catcttgggc aaacctctgg aagacatccg
    23521 catgattatt gcccacttag gcaacggcgc atccattacc gccatcaaaa acggcaaatc
    23581 cgtcgatacc agtatgggtt tcacgccgat cgaaggtttg gtaatgggta cacgttgcgg
    23641 cgacatcgat ccgggcgtat acagctatct gacttcccac gccgggatgg atgttgccca
    23701 agtggatgaa atgctgaaca aaaaatcagg tttgctcggt atttccgaac tttccaacga
    23761 ctgccgcacc ctcgaaatcg ccgccgacga aggccacgaa ggcgcgcgcc tcgccctcga
    23821 agtcatgacc taccgcctcg ccaaatacat cgcttcgatg gctgtgggct gcggcggcgt
    23881 tgacgcactc gtgttcaccg gcggtatcgg cgaaaactcg cgtaatatcc gtgccaaaac
    23941 cgtttcctat cttgatttct tgggtctgca catcgacacc aaagccaata tggaaaaacg
    24001 ctacggcaat tcgggcatta tcagcccgac cgattcttct ccggctgttt tggttgtccc
    24061 gaccaatgaa gaactgatga ttgcctgcga cactgccgaa cttgccggca tcttgtagcc
    24121 aaaaaaggga cgagtccgca aaaatgccgt ctgaaatttt cagacggcat tttgtttgga
    24181 ttttgggcgt acaatacgga aaacatgacg ataaggacac aaactatggc acagtttttc
    24241 gccgttcatc ccgacaaccc ccaagaacgc ctcatcaagc aggcggtcga aatcgtcaat
    24301 aaaggcggcg tggtcgttta tccgaccgat tcctgttatg ccttgggctg caaactcggc
    24361 gataaggcgg cgatggaacg catactctcc atccgcaaaa tcgatttgaa acaccacctg
    24421 accctgatgt gcgcagattt gagcgagttg ggcacatacg ccaaagtcga caacgtacag
    24481 tttcgtcagc ttaaagccgc cacacccggg ccttatactt ttattttaca ggcgacgaag
    24541 gatgtgccgg cgcgcacgct gcacccgaaa cgcaaaacca tcgggctgcg tattcccgat
    24601 aatgccattg cacaagccct gctgggggaa ttgggcgagc cgcttttaag ctgcaccctg
    24661 atgctgcccg aagacggcga accattgacc gatccttatg aaatccgcga gcgtttggaa
    24721 cacgccgtcg atttggtgat tgacggcggc tggtgcggaa ccgagccgac caccgtcgtc
    24781 gatatgaccg acggcacgga attggtgcgc caaggttgcg gcgatacggc ggtgttcggt
    24841 ttgtagggaa accgatgccg tctgaagcat cggctgttca gacggcattg cgcgccttgc
    24901 cggcggcagt ccgaaatgcc ggcgcgtatc gcgctcggtc ggaatatccg tttgaaacgg
    24961 cattttgatg cattactgca ccgcaatcgg aattctcggt tcgtagagca ggtcgtaggt
    25021 cggcttgttg agcaggtctt ggagcgtgaa accgtccaga tacgtgaaaa acgacttcat
    25081 cgcgccgccg agtatgcccg tcagccggca ggacggtgta atcaggcatt cgttgttctc
    25141 gcccatgcac tcgaccagct gcatcggttc gaggtggcgg acaaccgagc cgatgttgat
    25201 gcggtcgggc ggtgcggcaa gccgcagacc gccgcctttt ccgcgcacac tgtggaggaa
    25261 gccgcctttg accagcgcgg taacgacctt catcagatgg cttttggaaa tgccgtaggt
    25321 tacggcgatg gtactgatgt tgaccagcgc atcgtcgttg atggcagtgt agataaggac
    25381 gcgcagcccg tagtccgtat gttgtgtcaa atacatgatt ttctcggtat ggattgttat
    25441 tcttatcggt acggtttaag gttcacggac aataccttaa tggttgaaac cctgtccgtc
    25501 ggggcggtag aatgcagcct gtctgcggcg gtatgccgtc tgaaacatcc gcgctaccgt
    25561 ttgagaattt gttattgtaa ctcaaaatca tgaaaccgtt gaaacgacat cccgccctta
    25621 tcgggctttc gcgtgaccac caccattcgc tttccctgtg cgtgcgtctg ttgcggacgc
    25681 cggaagaaag gcatcgggac gaactcgaac cgcatttttc cgaattggaa acccattttc
    25741 gcgaagaaga agccaagttt gccccaattt ggcagaatgt cgcccccgaa ttgaaacaac
    25801 gtttcgagaa agaccacgcc cgactgcggc agatgatggc aagccccgaa tacggtaacg
    25861 cggcgtggaa taccgctttt gccacaaccc tgcgcgacca cgcgcgcttt gaagaacgcg
    25921 agctgtttcc cgccgccgaa ccgtttttgc cggcatgatt ccgttttgcg gcaaatatat
    25981 taatgataaa caaggaacac acatgaaatt taccaagcac cccgtctggg caatggcgtt
    26041 ccgcccattt tattcgctgg cggctctgta cggcgcattg tccgtattgc tgtggggttt
    26101 cggctacacg ggaacgcatg agctgtccgg tttctattgg cacgcgcatg agatgatttg
    26161 gggttatgcc ggactggtcg tcgtcgcctt cctgctgacc gccgtcgcca cttggacggg
    26221 gcagccgccc acgcggggcg gcgttctggt cggcttgact atcttttggc tggctgcgcg
    26281 gattgccgcc tttatcccgg gttggggtgc gtcggcaagc ggcatactcg gtacgctgtt
    26341 tttctggtac ggcgcggtgt gcatggcttt gcccgttatc cgttcacaga atcaacgcaa
    26401 ctatgttgcc gtgttcgcgc tgttcgtctt gggcggcacg cacgcggcgt tccacgtcca
    26461 gctgcacaac ggcaacctag gcggactctt gagcggattg cagtcgggct tggtgatggt
    26521 gtcgggtttt atcggtctga ttggtacgcg gattatttcg ttttttacgt ccaaacggtt
    26581 gaatgtgccg cagattccca gtccgaaatg ggtggcgcag gcttcgctgt ggctgcccat
    26641 gctgaccgcc atgctgatgg cgcacggcgt gatgccttgg ctgtcggcgg ctttcgcgtt
    26701 tgcggcaggt gtgattttta ccgtgcaggt gtaccgctgg tggtataaac ccgtgttgaa
    26761 agagccgatg ctgtggattc tgtttgccgg ctatctgttt accggattgg ggctgattgc
    26821 ggtcggcgcg tcttatttca aacccgcttt cctcaatctg ggtgtgcatc tgatcggggt
    26881 cggcggtatc ggcgtgctga ctttgggcat gatggcgcgt accgcgctcg gtcatacggg
    26941 caatccgatt tatccgccgc ccaaagccgt tcccgttgcg ttttggctga tgatggcggc
    27001 aaccgccgtc cgtatggttg ccgtattttc ttccggcact gcctacacgc acagcatacg
    27061 cacctcttcg gttttgtttg cactcgcgct tttggtgtat gcgtggaagt atattccttg
    27121 gctgattcgt ccgcgttcgg acggcaggcc cggttgagac aaaccgccgc agatttcggg
    27181 tctgggcggt ttgcttttca gacggcaggg cggtcagttg ccgtccagcc agcggtcgcg
    27241 tgtggttttg gcttcttcaa aatagcggta cagggcttcg cggtcgtcgg tggtcaggat
    27301 gtttgccaaa acgtccaact gtttgcccaa gccttgaacc agttgcagca ggctgtcttt
    27361 gttggcaagg cagatgtccg cccacacggc gggatgaccg gaggcgatgc gggtgaagtc
    27421 ccgaaagccc gtggcggcga atttcagata ttcctgtccg tcggggtggt cgagaatctg
    27481 gtggacatag gcgaaggcgg tcaggtgggg catatgggag acggcagcga aaaccgcgtc
    27541 gtggcgttgc gcgtccatcg tataaatttc cgcaccgacc gcgtgccaca gttcttctac
    27601 caaggcaatg ccgtctgaat gttcgccgcc gtgtggcgtg atgatgagtt ttctgtggcg
    27661 gaacagcccg aactgcgcgg cttgcgcacc gcttctgtcc gaaccggcaa tcgggtgggc
    27721 ggcgatgcag cggtgcaggc ggtcgggcag acagcggcgg aaggcttcga tgaccgaaga
    27781 tttggtgctg ccgacatcgg aaatccaagt gtgttccggc aaaacggggc gcagcgcggt
    27841 caaaatggcg ggaaaggtgg cgacgggcgt ggcaatcagt accaagtccg caccgccgat
    27901 gctgtccgcg tcgatggcaa cggaggcacg gtcaatcacg ccgcgttcca atgcacgttc
    27961 gaggttgtcg cggtcggtgt cgataccggt aacggtgcgg acgagtccct gccttttgag
    28021 gtcgagaacg aacgaaccgc cgatcagccc tacaccgatg agggcaatat ggttcaaaat
    28081 gggcatttgt gtaaacggtt ttcgcaaagt accgtcatgg tagcctatcg gcggaatatg
    28141 ccgcaaggtc ggcaggaaaa aggagaagaa atggacaaaa tcagagttgc cgccgtgcag
    28201 atggtgtcgg gcgtgtcgcc ggaaaccaac gtcgctgcca tgaaacgcct ggtcgcacgg
    28261 gcggcggagc agggtgtgga ttgggtgctg ctgcccgaat attgggtgct gatgggcgca
    28321 aacgataccg acaaactcgc gcttgccgag cctttgggcg gcggacgctt tcagacggca
    28381 ttgagcgaaa cggcgaaaga atgcggcgtg gtgctgtttg gcggaaccgt gccgctgcaa
    28441 agccccgagg cgggcaaggt catgaatact ttattggtgt acgggcgcga cggcaaacgg
    28501 acggggctgt accacaaaat gcacctcttc ggcttttccg gtttgggcga acgctatgcc
    28561 gaagccgata ccatccgcgc gggcggggaa gtgccgcact tgtcggcaga gggcgtgccg
    28621 gtggcagcag gtatttgtta cgatgtccgc tttcccgaat ttttccgccg ccagctgccg
    28681 tttgacgtat tgatgctgcc cgctgcgttt acgcacacga cgggcaaggc gcattgggag
    28741 ctgctgctgc gcgcgcgtgc cgtcgaaaac caatgttacg tcgtggcggc ggcacagggc
    28801 ggtttgcacg aaaacggacg gcgcacgttc ggacacagca tgattgtcga tccgtggggc
    28861 gacgtgttgg acgtattgcc cgaaggcgaa ggcgttgtta cggcagacat cgatgccaac
    28921 cgcctgaaca gcgtccgcaa ccgcctgccc gccttgaaac actgggtttt ggatgccgtc
    28981 tgaaggtttc aaacggcatc ggtgtcgggg aatcagcggg ctgtaggatg ggcttcagcc
    29041 tgccatttcc atcaatccca catttctacc gttttcatcg aatccatcga atccgcccct
    29101 ttcgacgacc cagtcctacg caactgaacc gtcattccca cggaagtggg aatctagaat
    29161 ctcg
//
LOCUS       DAXHNP010000007        26452 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.007, whole genome shotgun sequence.
ACCESSION   DAXHNP010000007 DAXHNP010000000
VERSION     DAXHNP010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26452
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.007"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(92..880)
                     /locus_tag="ACFM5C_000212"
     CDS             complement(92..880)
                     /locus_tag="ACFM5C_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6067997.1"
                     /translation="MNPQDKCWQVHRHLAEHADQRLTLVRNAPKHILLAGADADISRS
                     LLAKRYPQAVFEEYDSRADFLAAAAAVRKGGFWQRFTGKGVVQHCQSPTAPLPEACAD
                     MLWSNLGLLAAEQILPVLHNWARALETDGLLFFTCFGRDTFTELKCRLKENGIESRSV
                     MFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMSWNDENAA
                     RSCVGTIFEREGGLSITLETVYGHAVKKLMLPQGENVVQFFPKR"
     gene            complement(882..1625)
                     /gene="bioH"
                     /locus_tag="ACFM5C_000213"
     CDS             complement(882..1625)
                     /gene="bioH"
                     /locus_tag="ACFM5C_000213"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HFC6067998.1"
                     /translation="MPDAVKKVYLIHGWGANRHMFDDLMPRLPATWPVSAVDLPGHGD
                     APFAQPFDIEAAADAVAAQIDTPADILGWSLGGLVALYLAARHPDKVRSLCLTASFAR
                     LTADEDYPEGLAAPALGKMVGAFRSDYAKHIKQFLQLQLLHTPDADGIIGRILPDLAR
                     CGTPSALQEALDAAERADARHLLDKIDVPVLLVFGSKDAITPPRMGEYLHRRLKGSRL
                     VVMEKAAHAPFLSHAEAFAALYRDFVEGV"
     gene            1624..2349
                     /locus_tag="ACFM5C_000214"
     CDS             1624..2349
                     /locus_tag="ACFM5C_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6067999.1"
                     /translation="MDFLSRWRRIADAPTIRRCVLCHGSSGVSDGICAGCRDDLAAYR
                     TDAANSCPLCFRHIQGGAVCGGCQKKPPAFDRMWASLHYEPPVSNMIRTLKHLADLGM
                     VRPLANLMVQNPPDRLADECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWQIL
                     PRHTVFRHHRPPQSTLKGSERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELA
                     KTLKKSGANRICCWTLARTPMKK"
     gene            2414..2878
                     /gene="trmL"
                     /locus_tag="ACFM5C_000215"
     CDS             2414..2878
                     /gene="trmL"
                     /locus_tag="ACFM5C_000215"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HFC6068000.1"
                     /translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
                     KRAGLDYHEFASLTVHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPE
                     TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
     gene            2889..3011
                     /locus_tag="ACFM5C_000216"
     CDS             2889..3011
                     /locus_tag="ACFM5C_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6068001.1"
                     /translation="MPSENLSGHIPNRRPHCTAVRNVSGGHDAHSSSTQERNTF"
     gene            3008..3727
                     /locus_tag="ACFM5C_000217"
     CDS             3008..3727
                     /locus_tag="ACFM5C_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFC6068002.1"
                     /translation="MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKV
                     AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
                     TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVNQGTAHVKIEQIVPGQSAPV
                     AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAVSSSGTNLSVEKRRYEYVVKMGPFASQ
                     ERAAEAEAQARGMVRAVLTAG"
     gene            3789..4115
                     /locus_tag="ACFM5C_000218"
     CDS             3789..4115
                     /locus_tag="ACFM5C_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6068003.1"
                     /translation="MNIKHLLLTSAATALLSISAPALAHHDGHGDDDHGHAAHQHNKQ
                     DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
                     SSRRDD"
     gene            4197..4781
                     /gene="ruvA"
                     /locus_tag="ACFM5C_000219"
     CDS             4197..4781
                     /gene="ruvA"
                     /locus_tag="ACFM5C_000219"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFC6068004.1"
                     /translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
                     VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAV
                     AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
                     LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK"
     gene            4781..4918
                     /locus_tag="ACFM5C_000220"
     CDS             4781..4918
                     /locus_tag="ACFM5C_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068005.1"
                     /translation="MPSEGGAAFALTKPCVSASRCLPDGFSRKMALLSFLSDGIVFDA
                     V"
     gene            4944..6800
                     /locus_tag="ACFM5C_000221"
     CDS             4944..6800
                     /locus_tag="ACFM5C_000221"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6068006.1"
                     /translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMAGVRKWIA
                     ALAALTAGIGIMEALVFQFMGKIVEWLGKYAPAELFAEKGWELAAMAAMMVFSVAWAF
                     AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
                     TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
                     ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
                     IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
                     VNDGMATLSKPHTILDKPRALPLNVPQGAIKFEHIDFCYEAGKPLLNGFNLTIRPGEK
                     VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGVTQESLRAQIGLVTQDTSLL
                     HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPDLSDAKGRRGYDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMDGKTVIAIAHRLST
                     IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
     gene            6805..7728
                     /gene="rsgA"
                     /locus_tag="ACFM5C_000222"
     CDS             6805..7728
                     /gene="rsgA"
                     /locus_tag="ACFM5C_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HFC6068007.1"
                     /translation="MPSEHPFSDGISTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
                     EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
                     IVTAAVPSPSVRLLQRALLAAEAAGIRAVIVLNKADLPETALWREKLKFYETLGYPVI
                     ETRALENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
                     TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
                     PGCAFKAAAQTGAASPERLAFLQGITDELPG"
     gene            7752..7841
                     /locus_tag="ACFM5C_000223"
                     /pseudo
     CDS             7752..7841
                     /locus_tag="ACFM5C_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676973.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
     gene            7950..8213
                     /locus_tag="ACFM5C_000224"
     CDS             7950..8213
                     /locus_tag="ACFM5C_000224"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFC6068008.1"
                     /translation="MSKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLED
                     ALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGPKELNLESDE"
     gene            8197..9093
                     /locus_tag="ACFM5C_000225"
     CDS             8197..9093
                     /locus_tag="ACFM5C_000225"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFC6068009.1"
                     /translation="MNPTNDLKAWQQRAQAQTELLLERFLPSENEIPHTLHEAMRYAV
                     LDGGKRLRPMLVLAASELGEAVHEAVEQAMAAIEMIHAYSLVHDDMPAMDNDSLRRGK
                     PTCHIKYGEATALLVGDALQTQAFDVLSRPTELPAARQLAMLSVLAKAGGSAGMAGGQ
                     AIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGAMSCPNLSEDSLAVLDDYAAKLG
                     LAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLEAARSYAHKLVAEAVALL
                     EPFGDKALRLRQLAEFAVARKY"
     gene            complement(9202..9501)
                     /locus_tag="ACFM5C_000226"
     CDS             complement(9202..9501)
                     /locus_tag="ACFM5C_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HFC6068010.1"
                     /translation="MTASMYILLVLALIFANAPFLTTRLFGVAALKRKHFGHHMIELA
                     AGFALTAILAYILESRAGSVHDQGWEFYATVVCLYLIFAFPCFVWRYFWHTRNRE"
     gene            complement(9613..11058)
                     /gene="nuoN"
                     /locus_tag="ACFM5C_000227"
     CDS             complement(9613..11058)
                     /gene="nuoN"
                     /locus_tag="ACFM5C_000227"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HFC6068011.1"
                     /translation="MNWSDLNLMPAMPEIVLLALLVLLLLADLWVSDDKRRWTHYGAL
                     ATVAVTAVVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALMFTLFVYAKPYNQVRG
                     IFKGEFYTLSLFALLGMGVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
                     KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
                     FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAVVFAFRILVTGLGTVHHDWSLMF
                     ALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
                     LMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
                     KFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRARPAAGGNNAAKF
                     LLSINALLLVLWGIMPQTVIDWCAKALENTL"
     gene            complement(11068..12564)
                     /locus_tag="ACFM5C_000228"
     CDS             complement(11068..12564)
                     /locus_tag="ACFM5C_000228"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFC6068012.1"
                     /translation="MFSNYLLSLAIWIPIAAGVLVLSTGKDSRAPLARVLAFMGALAG
                     FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
                     AGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
                     RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFL
                     SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
                     PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKG
                     AIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
                     PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEM
                     KDINCREFTILAVLAVAVLGMGLYPNAFIEVVHQAANDLIAHVAQSKI"
     gene            complement(12653..14689)
                     /gene="nuoL"
                     /locus_tag="ACFM5C_000229"
     CDS             complement(12653..14689)
                     /gene="nuoL"
                     /locus_tag="ACFM5C_000229"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFC6068013.1"
                     /translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
                     AVLSAYVLWGFLNGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
                     HIYTIGYMHDEKVGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
                     YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQ
                     LFPGVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
                     FMVSRMSPIYEMSSTALSVIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
                     ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTM
                     LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
                     VFHGEEKWRSLPEHHDDHHGDHHGEEHHSLGKNDNPHESPLVVTLPLILLAIPSVIIG
                     YVAIEPMLYGDFFKDVIFVNADAHPTMHIMKEEFHGALAMVSHSLHSPVLYLAIAGVL
                     SAWLLYVKLPHLPAKIAQTFRPIYVLFENKYYLDALYFNVFAKGTRALGTFFWKVGDT
                     AIIDNGIVNGSAKLVGAIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
     gene            complement(14738..15079)
                     /locus_tag="ACFM5C_000230"
     CDS             complement(14738..15079)
                     /locus_tag="ACFM5C_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068014.1"
                     /translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
                     EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
                     RLERVGFVFPK"
     gene            complement(15203..15778)
                     /gene="fic"
                     /locus_tag="ACFM5C_000231"
     CDS             complement(15203..15778)
                     /gene="fic"
                     /locus_tag="ACFM5C_000231"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6068015.1"
                     /translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
                     IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
                     MNIAHPFLEGNGRSTRIWLDLVLKKNLKKIVNWQNVSKTLYLQAMERSPVNDLELRFL
                     LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
     gene            complement(15812..16117)
                     /gene="nuoK"
                     /locus_tag="ACFM5C_000232"
     CDS             complement(15812..16117)
                     /gene="nuoK"
                     /locus_tag="ACFM5C_000232"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFC6068016.1"
                     /translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
                     FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDELKG"
     gene            complement(16114..16785)
                     /locus_tag="ACFM5C_000233"
     CDS             complement(16114..16785)
                     /locus_tag="ACFM5C_000233"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFC6068017.1"
                     /translation="MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAM
                     LWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
                     AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
                     AAIALVYRKTTNPKRMDPADQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDGLKPE
                     GEGKA"
     gene            complement(16797..17276)
                     /gene="nuoI"
                     /locus_tag="ACFM5C_000234"
     CDS             complement(16797..17276)
                     /gene="nuoI"
                     /locus_tag="ACFM5C_000234"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFC6068018.1"
                     /translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
                     RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
                     GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
     gene            complement(17357..18433)
                     /gene="nuoH"
                     /locus_tag="ACFM5C_000235"
     CDS             complement(17357..18433)
                     /gene="nuoH"
                     /locus_tag="ACFM5C_000235"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFC6068019.1"
                     /translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
                     YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPI
                     MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
                     MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
                     IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
                     MFLGGWLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
                     LIPIGFAYIVILGVWMISPLNLWK"
     gene            complement(18436..20697)
                     /gene="nuoG"
                     /locus_tag="ACFM5C_000236"
     CDS             complement(18436..20697)
                     /gene="nuoG"
                     /locus_tag="ACFM5C_000236"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HFC6068020.1"
                     /translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
                     CRMCLVNVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
                     QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEI
                     AGLQEIAMVNRGEHSEIMPFIGKTVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
                     RKSVSAHDALGSNLIVQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
                     PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGNQNQVGIWANPMNTVEELYLAKKLAD
                     GLGVKNFATRLRQQDKRLSDGIKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
                     LRRAAKDRMALSVLAGSKEELFMPLLFQEAAHPDEWAGRLKNLSANAEHAVTASLKNA
                     EKAAVILGAEVQNHPDYAAIYAAAQELADATGAVLGILPQVANSVGADVLGVNSGESV
                     AEMANAPKQAVLLLNVEPEIDMVDGAKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
                     IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPMWKVLRVLGNLFDLQGFEYHDTAAI
                     LKDALDAESLPSKLDNRSTWTGEGVQTASDRLVRVGGVGIYHTDSIVRRSAPLQATVH
                     AAVPAARVNPNTLGRLGLQDGQTAVAKQNGASVSVAVKADAGLPENVVHLPLHTENAA
                     LGALMDTIELAGA"
     gene            complement(20987..21424)
                     /locus_tag="ACFM5C_000237"
     CDS             complement(20987..21424)
                     /locus_tag="ACFM5C_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068021.1"
                     /translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
                     GLDFVAVFDHEGQRIGFYSSGDNEYEVRRNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
                     YAELLHGDVNIINWCEKFEPTDEDNERAVKELFKSFKNIINKL"
     gene            complement(21424..22725)
                     /gene="nuoF"
                     /locus_tag="ACFM5C_000238"
     CDS             complement(21424..22725)
                     /gene="nuoF"
                     /locus_tag="ACFM5C_000238"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HFC6068022.1"
                     /translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
                     QTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
                     MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
                     DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
                     FSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
                     MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
                     ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
                     ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
     gene            complement(23115..23588)
                     /gene="nuoE"
                     /locus_tag="ACFM5C_000239"
     CDS             complement(23115..23588)
                     /gene="nuoE"
                     /locus_tag="ACFM5C_000239"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HFC6068023.1"
                     /translation="MLSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPET
                     IAFVADYIGISPAQAYEVATFYNMYDLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
                     LGISYGETTPDGKFTLVEGECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAELE"
     gene            complement(23588..24844)
                     /gene="nuoD"
                     /locus_tag="ACFM5C_000240"
     CDS             complement(23588..24844)
                     /gene="nuoD"
                     /locus_tag="ACFM5C_000240"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFC6068024.1"
                     /translation="MANKLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLL
                     HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMF
                     AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
                     YRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
                     RIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
                     GDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
                     HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
                     MAKGHMLADVVAIIGTQDIVFGEVDR"
     gene            complement(24834..25427)
                     /locus_tag="ACFM5C_000241"
     CDS             complement(24834..25427)
                     /locus_tag="ACFM5C_000241"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFC6068025.1"
                     /translation="MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTA
                     LRDHEELHFELLVDLCGVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDD
                     FPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
                     VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
     gene            complement(25440..25922)
                     /locus_tag="ACFM5C_000242"
     CDS             complement(25440..25922)
                     /locus_tag="ACFM5C_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFC6068026.1"
                     /translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
                     AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
                     ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
                     "
     gene            complement(25913..26269)
                     /locus_tag="ACFM5C_000243"
     CDS             complement(25913..26269)
                     /locus_tag="ACFM5C_000243"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HFC6068027.1"
                     /translation="MLSAYFPVFVFILVGLAAGVLFILLGTILGPKRHYAEKDAPYEC
                     GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
                     TVGFVYEWKKGALEWE"
BASE COUNT         6579 a         7434 c         6717 g         5722 t
ORIGIN      
        1 cactatacat cggcatttcc tttagttctg tcggttttca caaacaaatg ccgtctgaaa
       61 cttggaaacg gcttcagacg gcatctgcac atcatctctt cggaaaaaac tgcaccacgt
      121 tctccccttg cggcagcatc agttttttaa cggcgtgtcc gtacactgtt tccagcgtaa
      181 tactcaaacc gccttcccgt tcaaatattg tcccgacaca cgaacgcgcg gcgttttcat
      241 cgttccacga catcgcccgc caaacgccca gcgtgtccat atccgcccaa aacgtttccg
      301 cctttttgta atccaacacc agcttcgccg tatcggtaac ggggtcgtaa aacccgtttt
      361 cagcaagcat atcgcccaag tcgtgcatat cgggaaacat cacgctgcgg ctttcaatgc
      421 cgttttcttt cagacggcat ttcagttcgg taaaagtgtc gcgcccgaag caggtaaaaa
      481 acagcagccc gtccgtctcc agcgcgcgcg cccagttgtg cagcacagga aggatttgtt
      541 ccgccgccaa cagtccgaga ttcgaccaca acatatcggc acacgcttcg ggcagcggcg
      601 cggtcgggga ttggcagtgt tgcaccacgc ccttacccgt aaacctttgc caaaaaccgc
      661 ccttgcgcac ggctgcggca gccgccaaaa aatccgcacg ggaatcgtat tcttcaaata
      721 ccgcctgcgg atatcgtttc gccagcaggc tgcggctgat gtccgcatcc gccccggcaa
      781 gcaggatatg tttgggcgcg ttgcggacga gtgtcagccg ttggtcggca tgttcggcaa
      841 gatggcggtg aacctgccag catttgtcct gcggattcat gtcaaacccc ttcgacaaag
      901 tcgcggtaca gcgcggcaaa cgcttccgca tggctcaaaa acggcgcgtg tgccgccttt
      961 tccatcacaa ccagcctgct gcctttcaaa cggcggtgca gatactcgcc catgcgcggc
     1021 ggcgtaatcg cgtctttgct accgaacacc agcagtaccg gaacatctat cttgtccaac
     1081 aaatgccgcg catccgccct ttccgccgcg tccaaagctt cctgtaaggc ggagggcgtg
     1141 ccgcagcgcg ccaaatcggg caggattctg cctatgattc cgtccgcatc aggcgtgtgc
     1201 agaagctgga gttgtagaaa ctgtttgata tgtttggcat aatccgaacg gaacgcgccg
     1261 accattttgc ccaatgcagg cgcggcaagc ccttcgggat agtcttcgtc agccgtcagt
     1321 cgggcgaaac tcgccgtcag gcagagcgaa cggactttgt cgggatggcg cgccgccaga
     1381 tacagcgcga ccaatccgcc gagcgaccag ccgagaatgt cggcgggcgt atcgatttgt
     1441 gcggcaacag cgtcggcggc tgcctcaata tcgaagggtt gcgcgaaggg cgcgtcgccg
     1501 tgtccgggca aatcgacggc ggacaccggc cacgttgcag gcaggcgcgg catcaaatcg
     1561 tcgaacatgt ggcggttcgc cccccaaccg tgtatcaggt aaactttttt gacggcatca
     1621 ggcatggatt ttctctctcg ttggcggcgc atcgcagacg cgcccactat caggcgttgc
     1681 gtattatgcc acggttcgtc cggcgtttca gacggcatct gcgccggctg ccgcgacgat
     1741 ttggcggcat accgcaccga cgcggcaaac agctgccccc tgtgtttcag acacatccaa
     1801 ggcggcgcgg tgtgcggcgg ctgtcagaaa aaaccgcccg cattcgaccg gatgtgggct
     1861 tcgctgcatt acgaaccgcc cgtcagcaac atgatacgta cgctgaaaca cttggcagat
     1921 ttgggcatgg ttcgcccatt ggcaaacctg atggtacaaa acccgcccga ccggcttgca
     1981 gacgaatgtt tcgatttcgt cctgcccgta ccgctaagca gggagcggct gctgcaacgc
     2041 gggttcaacc aaagtgaaag catcgtcggg ttgttggcac aacgctacgg ctggcagata
     2101 ctgccccgac acaccgtatt ccgacaccac cgcccgccgc aaagcacgct caaaggcagc
     2161 gaacggcggc gaaacatcaa aaacgccttt gaaatccgca caccgatacc ggaaaactgt
     2221 aatattctgt taatcgacga tgtctttacc accggcgcga cgctggacga actggcaaag
     2281 acgctgaaaa aatcgggcgc gaaccgcatc tgctgctgga cgctggcacg cacgccaatg
     2341 aaaaaataac taaatttttt gacaccccat ccgccttgtg gcaaggttac gcgcctataa
     2401 gtgattgata tttatgttta ccatcgtttt ataccagccg gaaatcccgc cgaacacggg
     2461 caacatcatc cgcctgtgcg ccaataccgg cgcggatttg caccttgtca aaccgctcgg
     2521 cttcccattg gattccgcca aaatgaaacg cgccgggctc gactaccacg aattcgccag
     2581 cctgacggtg cacgaaaact tcgacgactg cctcaaggca ctcgcaggca ggcgcatttt
     2641 cgccctgacc accaaaggca cggcgcgccc cgatgaaacc gcgtttcaaa aaggcgacgt
     2701 tttactgttc gggccggaaa cgcgcggact gcctgccgac atcctcgaca gcctgcccgc
     2761 cgcgcaaaaa atccgcctgc ccatgcagcc cggcagtcgg agtatgaacc tttccaatac
     2821 cgttgccgtg attctctttg aagcgtggcg gcaacacggt tacgcaggcg gcgtttgaac
     2881 gcaagttcat gccgtctgaa aacctatccg gacacattcc gaaccgccgt ccgcactgta
     2941 cggcggttcg gaacgtatcc ggcgggcatg atgcccattc gtcttcaact caagaacgga
     3001 acacgttttg actttaaccc gaaaaaccct tttccttctc accgccgcat tcggcacaca
     3061 ctcccttcag acggcatccg ccgacgcagt ggtcaaggca gaaaaactgc acgcctccgc
     3121 caaccgcagc tacaaagtcg ccggaaaacg ctacacgccg aaaaaccaag tcgccgaatt
     3181 cacgcaaacc ggcaacgcct cgtggtacgg cggcaggttt cacgggcgca aaacttccgg
     3241 cggagaacga tacgatatga acgcctttac cgccgcccac aaaaccctgc ccatccccag
     3301 ctatgtgcgc gtaaccaata ccaaaaacgg caaaagcgtc atcgtccgcg tcaacgaccg
     3361 cggccccttc cacggcaacc gcatcatcga cgtatccaaa gccgccgcgc aaaaattggg
     3421 ctttgtcaac caagggacgg cacacgtcaa aatcgaacaa atcgtcccgg gccaatccgc
     3481 accggttgcc gaaaacaaag acatctttat cgacttgaaa tctttcggta cggaacacga
     3541 agcacaagcc tatctgaacc aagccgccca aaacttcgcc gtttcgtcat cgggtacgaa
     3601 cctctcggtt gaaaaacgcc gttacgaata cgtcgtcaaa atgggaccgt ttgcctcgca
     3661 ggaacgcgcc gccgaagccg aagctcaggc acgcggtatg gttcgggcgg tattgaccgc
     3721 cggctgacgg ttatttgata ccttattaat atccacattt tccaacccac gatttacaaa
     3781 ggcaaaatat gaacatcaaa caccttctct tgacctccgc cgcaaccgca ctgctgagca
     3841 tttccgcccc cgcgctcgcc caccacgacg gacacggcga tgacgaccac ggacacgccg
     3901 cacaccaaca caacaaacaa gacaaaatca tcagccgcgc ccaagccgaa aaagcagcgt
     3961 tggcgcgtgt cggcggcaaa atcaccgaca tcgatctcga acacgacaac ggccgtccgc
     4021 actatgatgt cgaaatcgtc aaaaacggac aggaatacaa agtcgttgtc gatgcccgta
     4081 ccggccgcgt gatttcctcc cgccgcgacg actgaatttg atacaatccg tgccgtctga
     4141 agcccgaacc ggtttcagac ggcattttgc acccgacact tcaggattcg gcacacatga
     4201 tcagcagact gaccggcaaa ctggttgaaa aaaaccctcc gcaaatcgtc atcgatgtca
     4261 acggtgtcgg ctatgaggcc gacgtatcga tgcagacctt ctacaacctg ccgcccgtgg
     4321 gtgaaagcgt acaactgttt acccagctta tcattcggga agacgcacat cttttatttg
     4381 gttttgccac tgcggaagaa cgcaagacct tccgccaact gattaaggtc ggcggcatcg
     4441 gcgcgaaaac ggctttgggc attttgtcag cgatgacggc agacgagctg gcgcgggcgg
     4501 ttgccgaaga agatgtcaaa cgcctgtctt ccgcgccggg aatcggcaaa aaaaccgccg
     4561 aacgtatggt cttggaactg cgcggcaagc tggtcgcgca tacggtaacg gacgggctgt
     4621 ttgccgccgc acccgccgcc gacgaaacgg aagacatcgt cagcacgctg cttgcgctgg
     4681 gttacagcga acgcgaagca aaagcggcgg tcaaaggcgt tccggagggg acggacgtgg
     4741 gcgaaggcgt gcgccttgct ttgaaaaacc tgctgaaata atgccgtctg aaggcggcgc
     4801 ggcgtttgcc ctgacgaaac cctgcgtttc cgcctcgcgc tgtcttcccg acggcttttc
     4861 ccgtaaaatg gcgttattgt ccttcctttc agacggcatt gtgtttgatg ccgtctgaaa
     4921 ctgttttacc gaaatcgaaa acaatgttga acaaaatatt ttcctggttc gagtcccgaa
     4981 tcgaccctta tcccgaagcc gccccgaaaa cgccagaaaa aggcttgtgg cggtttgtct
     5041 ggagcagcat ggccggcgtg cggaaatgga tagccgccct ggctgcgctg accgccggca
     5101 tcggcattat ggaagccctg gtttttcaat ttatgggcaa aatcgtggag tggctcggca
     5161 aatacgcgcc cgccgaactg tttgccgaaa aaggttggga actggcggca atggcggcga
     5221 tgatggtatt ttcggttgcg tgggcgtttg ccgcgtccaa cgtgcgcctg caaacccttc
     5281 agggcgtgtt ccccatgcgc ctgcgctgga acttccaccg cctgatgctg aaccaaagcc
     5341 tcggttttta tcaggacgaa tttgccggac gcgtgtccgc caaagtcatg cagaccgcgc
     5401 tggcgttgcg cgacgcggtg atgacggttg ccgatatggt cgtttatgtg tcggtgtatt
     5461 tcattacctc cggcgtgatt ctcgcctcgc tcgactcatg gctgctgctg ccctttatcg
     5521 gctggattgt cggtttcgct tcggtgatgc gcctgctgat tcccaaattg gggcaaaccg
     5581 ccgcatggca ggcggatgcc cgctcgctga tgaccggccg cattaccgat gcctattcca
     5641 atatcgccac cgtcaaactc ttctcccacg gcgcgcgtga agccgcctat gccaagcagt
     5701 cgatggaaga atttatggtt acggtgcgcg cccaaatgcg gctggcgacg ctgctgcatt
     5761 cgtgcagctt catcgtcaac acctccctga ccctctccac cgccgcactg ggcatctggc
     5821 tttggcacaa cggacaggtc ggcgtgggcg cggtcgccac cgccaccgcg atggcgttgc
     5881 gcgtcaacgg tttgtcgcaa tacatcatgt gggaatccgc gcggctgttt gaaaacatcg
     5941 gcaccgtcaa cgacggtatg gcaaccctgt ccaaaccgca caccatcctc gacaagcccc
     6001 gggcactgcc gctgaacgtg ccgcaaggcg caatcaaatt tgaacacatc gatttctgct
     6061 acgaagcggg caaaccgctg ctcaacggct tcaacctcac catccgcccg ggcgaaaaag
     6121 tcggcttgat cggacgcagc ggcgcgggca aatccaccat cgtcaacctg cttttgcgct
     6181 tctacgaacc gcaaagcggc acggtttcga tcgacgggca ggacataagc ggcgttaccc
     6241 aagaatcttt acgcgcccaa atcggtttgg tcacgcaaga tacctcgctg ctgcaccgtt
     6301 ccgtgcgcga caacattatt tacggccgcc ccgacgcgac cgatgccgaa atggtttctg
     6361 ccgccgaacg cgccgaagcc gccggcttca tccccgacct ttccgatgcc aaagggcggc
     6421 gcggctacga cgcacacgtc ggcgaacgcg gcgtgaaact ctccggcggt caacgccagc
     6481 gcatcgccat cgcccgcgtg atgctcaaag acgcaccgat tcttcttttg gacgaagcca
     6541 ccagcgcgct cgattccgaa gtcgaagccg ccatccaaga aagcctcgac aaaatgatgg
     6601 acggcaaaac cgtcatcgcc atcgcccacc gcctctccac catcgccgca atggacaggc
     6661 tcgtcgtcct cgacaaaggc cgcatcatcg aagaaggcac gcacgccgaa ctcctcgaaa
     6721 aacgcgggct ttacgccaaa ctctgggcgc accagagcgg cggcttcctc aacgaacacg
     6781 tcgagtggca gcacgactga accgatgccg tccgaacacc cgttttcaga cggcatttcc
     6841 acacccaacc ccaaagaaac catgaacgac accgcccaaa ttaccgccag ctacggccgc
     6901 cgctacatcg tgcgcacgcc cgacggcaca acctacgaag ccagcacgcg caaaaaacgc
     6961 gtcgatttcg cctgcggcga ccgtgtccgc atcagccccg tcaacgccga acaagttgtg
     7021 attgaagatt ttttaccgcg ccaaagcctg ctctaccgcc aagacgcgtg gaaaaccaaa
     7081 ctcattgccg ccaacgttac ccaactcctc atcgtaaccg ccgccgtccc gagtccgagc
     7141 gtgcggctgc tacagcgcgc cctgcttgcc gccgaagccg ccggcatccg cgccgtcatc
     7201 gtcctgaaca aagccgacct gcccgaaacc gccctttggc gcgaaaaact caaattctac
     7261 gaaacgctgg gttatcccgt catcgaaacc cgcgcactgg aaaacgccgg cagcctgcgc
     7321 cccgccctgc aagggcacag caacatcctg ctcgggcaga gcggtatggg caaatccacc
     7381 ctgaccaacg cccttttggg cagccaaacc gcccgcaccg gcgacatttc cgccgcactc
     7441 gactcgggaa aacacaccac cacccacgcc cggctttatg atttgaacgg cgaaacccaa
     7501 ctcatcgact ccccgggttt gcaagaattt ggtttacacc acctccaagc cgccgatttg
     7561 ccgcgctatt tccccgattt ccgccacctt gtcgggcaat gccgcttcca caactgcacc
     7621 caccgcgccg aacccggctg cgccttcaaa gccgccgcgc aaaccggggc ggcaagcccc
     7681 gaacgcctcg cctttttgca gggcatcacc gacgaactgc ccgggtaacg ccttgccgcc
     7741 tgggcggaaa aatgccgtct gaagccggat tcgggtttca gacggcatcc gtttttcaaa
     7801 aatgctacaa tccgcttttt actggaacat ccgaaactat gttccaacac gcaggacgac
     7861 acttaaagca ccgccctatg tgtcgtcctg atttggaagg gcttacaccc ctcccaaata
     7921 aagtctgatt ctaccgcccc gaaggacaga tgtccaagtg gcggggtttc aaccgaaaag
     7981 gaaacacgat gaagaaaaac gccccgaaat cgtttgaaga agccttgtcg cgccttgaat
     8041 cgctgacaca agctatgcag ggcgaaatgc ccttggaaga cgcgcttgcc gcctatcagg
     8101 aaggcaacga gctggtcaga tactgccaaa ccaagctggc gcaagtcgaa cagaaattac
     8161 aggttttgga cgcggacggg ccgaaggagt tgaaccttga atccgacgaa tgatttgaaa
     8221 gcgtggcaac agagggcgca ggcgcaaaca gagctgctgc tggaacgctt tttgccgtct
     8281 gaaaacgaaa taccgcacac actgcacgaa gccatgcgtt atgcggtttt ggatgggggc
     8341 aaacgtctgc ggccgatgct ggttctggca gcttcggaat taggcgaagc cgtgcatgaa
     8401 gcagtagaac aggcaatggc ggcaatcgaa atgatccatg cctattcgtt ggttcacgac
     8461 gatatgccgg caatggacaa cgacagcctg cgtcggggca aaccgacctg ccacatcaaa
     8521 tatggcgaag ccaccgcgct actggtcggc gacgctttgc aaacccaagc cttcgacgtg
     8581 ttaagccgtc cgacagaact gcccgcagca cgccagttgg caatgttgtc ggtgttggcg
     8641 aaagcgggcg gcagcgcggg catggcgggc ggtcaggcaa tcgatttggc gaatgtcggc
     8701 aaacaaatgg ttcaagccga tttggaacag atgcacagcc tgaaaacggg tgcgctaatc
     8761 cgtgcggcgg ttttattggg ggcgatgtcc tgcccgaatc tgtctgaaga cagtctggcg
     8821 gtattggacg attatgcggc aaaactgggg ctggcgttcc aagtcattga cgatgtgttg
     8881 gattgtgaag cggacacggc gactttgggc aagacggcgg gcaaagatgc agacaacgac
     8941 aagccgactt atgtgaaact gatgggcttg gaagcggcgc gctcatacgc acacaaactg
     9001 gttgccgaag cggtcgcgct gctcgaaccc ttcggcgaca aagccctgcg cctgcggcag
     9061 ttggcagaat ttgcagtcgc ccgcaaatat taaaaccggc gtatatcgcc ggctgaaacg
     9121 tgccggcaca gcgatgccgg cctgcacttg aatgaaacaa atgccgtctg aacaggtttc
     9181 agacggcatt tctatgcttg tctattccct gttgcgcgtg tgccaaaaat accgccacac
     9241 aaaacatgga aacgcaaaaa tcaggtacag gcagacgact gtggcataaa actcccaacc
     9301 ctgatcgtgt accgatcctg cacgggattc gagaatatag gcaagaatgg cggtcagtgc
     9361 gaaacctgcc gccagctcga tcatgtggtg tccgaaatgt ttgcgcttga gcgcggccac
     9421 gccgaacagt ctggtggtga ggaagggggc gttggcaaag atgagtgcca agaccaaaag
     9481 gatgtacatg gatgcggtca tggtgggctt tctgtttggg cattgtcggc ggcgatgccg
     9541 tctgaactgc attgcggaac ggcatatctt aacaaaaacg gcagcctctg acacggctgc
     9601 cgttgcggcg gcttacagcg tgttctccaa cgccttggcg caccagtcga taacggtttg
     9661 cggcataatg ccccacagca ccaacagcag cgcgttgatg cttaagagga attttgcggc
     9721 attgttgccg ccggcggcgg gacgggcgcg gccggattcg tcaaaataca tgactttgac
     9781 cacgcgcagg tagtagaacg cgccaatcag cgacatcacg acggcaaata cggacaacca
     9841 aacatagcct tgttttaaga gtgccataat cacgccgaat ttggcgtaaa agcccatcag
     9901 cggcggaatg cccgccatag agaacataac cagcagcatc aaaaaggcaa gccatacgcg
     9961 gtgttggttc aaccctgcca aatcgctgat gttttcgcac tcgttgtccc cgtccgacaa
    10021 caccatcaac acaccgaacc ctgccgccgc catcagcgcg taggtaatgg cgtaatagag
    10081 acccgccgca aagccgaccg cgcccgccat aaacgccagc aggataaacc ccatatgcga
    10141 tacggtggaa taggcgagca tacgtttgat attggtctgc atgatggcgg caaggttgcc
    10201 gaccagcagc gaggcggcgg caagcagggc aaacatcaga gaccagtcat gatgcacggt
    10261 tcccaacccg gtaacgagga tgcggaaagc gaaaacaacg gcggcgattt tcggggcagt
    10321 gccgaccagg gcggtaacag aagtgggcgc gccgtgatac acgtcgggca cccacatatg
    10381 gaacggcacc gcgccgagtt tgaacgcaac ggcgacgacg ataaacacca gacccagttt
    10441 caacagccat tcgtttgctt cttcattgaa ggaagaggcg agcacgccgg caaattccag
    10501 cgaaccggtt gcgccgtaaa ccatagaaat accgtagagc agcaggccgg atgccagcgc
    10561 acccagaaca aaatatttca aggcggcttc ggcggcaaag ccggaatcgc ggcgcagggc
    10621 aatcagggcg taaagggcaa gcgacaagag ttccaaaccg atataggcag ttaaaaaatg
    10681 ccccgcgctc accatcacgc ccatacccaa gagggcaaac agcgacaggg tgtaaaactc
    10741 gcctttgaaa ataccgcgca cttggttgta gggcttggca tagacaaaca gggtaaacat
    10801 caaggcatat aaaaccattt ttgccaaacg cgacataccg tctgcaatat acatcccgtt
    10861 gaacgaagac gtgctgccct gttcccacac cgccaactgc accacagccg taaccgccac
    10921 cgttgccaac gcgccgtaat gcgtccaccg gcgtttgtca tcactgaccc acaagtccgc
    10981 cagcaacaat aacaccagca gcgcaagcag cacgatttcg ggcatggcgg gcattaaatt
    11041 caaatcagac cagttcattt acacacctca aatcttgctt tgtgccacat gggcaatcaa
    11101 atcgtttgcc gcctgatgca ccacttcgat aaatgcgttc ggatacaggc ccatacccaa
    11161 taccgcaacc gccaaaaccg ccagaatcgt aaactcgcga cagttgatgt ctttcatttc
    11221 ggcaacgtgc ggattgtgaa tcgcgccgaa aatcacgcgc ttgtacatcc acagggtata
    11281 agacgcaccg taaatcagcg tcatagccgc caacgcgccc acccagaaat tcactttaac
    11341 cgcgcccata atcaccataa actcgcccac gaagccagaa gtcgccggca gaccggcatt
    11401 ggccataccg aacaacatca taaacgccgc aaacttaggc atcacattga ccacgccgcc
    11461 ataatcggca atattgcggg tatgcaggcg gtcgtacatc acgccgatac acataaacat
    11521 cgcggcagac acaaaaccgt gggaaatcat ttgaatgatt gcgcctttca atgcccaatc
    11581 attcaattgg ccgttcacaa acaggaacat acccaaagtg acaaaaccca tatggctgat
    11641 ggacgaatac gccaccagtt ttttcatatc ggtttgcacc aaagccacca taccgatgta
    11701 aatcacggca atcaggctca atacaatgat cacaggggca aaatagcgtg ccgcatccgg
    11761 cataatcggc aggataaagc gcaagaaacc atacgcaccc agcttcagcg taatcgccgc
    11821 caacaccatc gaaccgccgg tcggcgcttc aacgtgggca tccggcaacc aagtgtgcac
    11881 agggaacatc ggcactttta cggcaaatga caggaagaac gctgcaaata aaagctgttg
    11941 tacgcccaac ggaatctgtt tgatgttttg gaaatcgaca atagagaagc tgcctgtttg
    12001 atagtacagg taaaccatag caaccagcat caggagcgaa cccatcagcg tatagaggaa
    12061 cagcttgacc gacgcataga cgcggcgcgg gccgccccat acaccgataa tcaggtacag
    12121 cggaatcagc ataccctcga agaacacata aaacagaatc gcatcctgcg cggcaaacgc
    12181 accgttaatc aaacccgaca tcatcaggaa tgccgccata tactgcgccg ggcgtttctg
    12241 aataacttcc caaccggcca ataccaccag cagcgtaata aacgcattca agatgataaa
    12301 gagcactgaa ataccgtcca cgcccaatgc gtagttgatt ttcagaagcg gaatccactc
    12361 gtggaactcg gtaaattgat agccgccgct caaacggtcg aaaccggtaa acaggggcag
    12421 cgttaccaag aaaccggcaa gcgcacccat aaaggcaagc acacgcgcca gcggcgcacg
    12481 gctgtcctta ccggtcgaca aaaccagcac acctgcggcg atgggtatcc atattgccaa
    12541 gctgagtagg tagttggaaa acatagtggt taacctgtgg ttaaaataaa aatatcgttg
    12601 tacgggttgg tttgtcagac gacgttttaa gagaccgtct gaaacctcat ccttatctga
    12661 acaatcccca gaaggtcata ccgagcaaga ccaatacgcc gaacaccata gcggcggcgt
    12721 aggtatagat aaagccggtt tgagctttac gcacttgcgc ggcaatcgcg ccgaccagtt
    12781 tggcagagcc gttgacgatg ccgttgtcga taatggcggt atcgccgact ttccagaaga
    12841 aagtacccaa tgcgcgtgtg cctttggcga aaacgttgaa atacagggcg tcgaggtagt
    12901 atttgttttc aaacaaaacg taaatcggac ggaacgtctg tgcaattttc gctggcaggt
    12961 gcggcagttt gacgtacaaa agccatgcgc tcaacacgcc tgcgatagca aggtagagta
    13021 caggcgaatg caggctgtgc gacaccattg ccaatgcgcc gtggaactct tccttcatga
    13081 tgtgcatggt cggatgcgcg tcggcgttga cgaaaatcac atctttgaag aaatcgccgt
    13141 aaagcatagg ctcgatggca acgtagccga tgatgacgga cggaatggca agcaaaatca
    13201 aaggcagggt aacaaccaac gggctttcgt gcggattgtc gtttttgccc aagctgtgat
    13261 gttcttcgcc atgatgatcg ccatgatgat cgtcatgatg ttcaggcaag ctgcgccatt
    13321 tctcttcgcc gtggaacacc ataaagtatt ggcggaacgc gtagaacgcg gtaacgaaca
    13381 cgctggcaag gacggcaaaa taggcaaagc cgctgcccgg cagggtgctg tatttcgccg
    13441 cttcgataat cgaatcttta gaatagaagc cggagaagaa cggcgtaccg atcagcgaca
    13501 agttaccgat cagcatggtc agccaagtaa tcggcatgta ttttttcagg ttgcccatgt
    13561 ggcgcatgtc ttggtcgtgg tgcataccga taatcgcgct gcctgccgcc aagaacaaca
    13621 aggctttaaa gaaagcgtgg gtcatcacat ggaacatcgc cacggaatag gcagacgcac
    13681 ccaaagccac ggtcatatag cccagttgcg acaaggtgga atacgcaacc acacgtttga
    13741 tgtcgttttg aatcacgccc aagaaaccca taaacagggc ggtaatcgca ccgatcacca
    13801 taatgacaga cagcgcagtg ctgctcatct cataaatcgg cgacatacgc gataccataa
    13861 acagaccggc ggtaaccatc gtcgcagcgt gaatcaatgc agaaatcggg gtcgggcctt
    13921 ccatcgaatc aggcagccaa acgtgcagtg ggaattgtgc cgatttaccc atcgcaccga
    13981 caaacaggag caaacaggtg acagtaatca acgaccattc cacaccgggg aaaagctgga
    14041 tggtggcatt ttgcacgttg ggcagataag cgaatacatc ttgatagcgc aggctgccgc
    14101 cgaaataggc aagcaccaag ccgataccga gcaaaaagcc gaagtcgccg acacggttga
    14161 tcaaaaaggc tttcaggttg gcaaatgttg cgcttggacg tttgaaatag aaaccgatca
    14221 agagatacga caccaagccc acagcctccc agccgaagaa gagctggatg aagttgttgc
    14281 tcataatcag catcaacatg ctgaaagtaa acaaagaaat atagctgaag aagcgttggt
    14341 agccgacttt ttcatcgtgc atatagccga tggtgtagat atgcaccatc aacgatacgc
    14401 ccgttaccac gaccatcatc atcgccgtca tcgtatcgac caagaagccg acggagaaat
    14461 ccaaaccgcc catcgtcagc caggtataga cgttctcatc aaacttggca cggctgccat
    14521 tgaggaatcc ccacagcaca taagccgaca gcacggcaga caccgccaca ccgagtatcg
    14581 taacagtatg cgcaccggca cgaccgattt tgttgccgaa caaacccgca atcaacgagc
    14641 ctgccaacgg aacaagggca attatcaaat ataaagtcat gtcgttcatt tgattgaatc
    14701 cgattgattt aaaaatctat gtttgtttcg tacaaaatta cttcggaaaa acaaatccaa
    14761 cacgctccaa tcgtttgcgt gccacagcta attgctcttc agtaaataaa tcacaccacg
    14821 gcttttgtaa caccagatat tccatactgt atttcaaggc gtggactccg ccaccactca
    14881 gaatcagctc tgtaaaaccg gtctgagtct tcttttcccc cgtacttaat aatttatccg
    14941 ccgcctcttt accaccaaat tcatttacaa tttgtaaaaa tcgtgtcgcc ttgtaaggtt
    15001 gcggcaaatt caaagcctcc tgataaatat ttaacatggc tttatgaaat tcttgttcta
    15061 actgattttt atccatcatt cttcttccaa tatttcagac cggattattc ttacccagaa
    15121 tttcttttct catccgctcc cgtctgatca cctaccgaat caggtcgtct gaaacagtct
    15181 gaaatcgctt ttcagacgac cctcagcctt tttcataccc ttcgtaataa tacgactgct
    15241 cgataccttt aaagatgatt tcacggttgt ccacatcgtc ggtcaggttg tcctttaaca
    15301 gaaagcgcag ttctaaatcg ttgacggggc tgcgttccat cgcctgcaaa tacagggttt
    15361 tgcttacatt ttgccagttt acgatttttt tcaggttttt cttcagcacc aaatccagcc
    15421 agatgcgggt acttctgcca ttaccctcca aaaacggatg ggcaatgttc atttcaacat
    15481 atttggcgat gatttcttca aaagtccgct cgggcatctg ctcgatttta accaaagcct
    15541 cttttaaata catggcgttg gcaaaacgaa aaccgccttt ggaaatgttg tcttccctga
    15601 tttgacccgc aaaatcatat aagccgccga acaggtaacg gtgaatctgt tgcaggcccg
    15661 cggtggtacc gacttcgata cggtcgatgt cgccgctttc aaacaggcgg cgggcattat
    15721 gcaggctttg ttcgtctatg gatttcatcg tttttcctat cgggttttca gacggcatcg
    15781 gtgtcttgtc aggtctcgac ccaacctacc tttacccttt caactcgtcc aaatcggcaa
    15841 cattaatcgt ttgtcggttg cggtacacca ataccataat cgccaaaccg atggcagatt
    15901 cggcagcggc aacggtcaat acgaagaata cgaaaatttg tccggcagta tcgcccaaat
    15961 gttgcgagaa ggcgataaag ttgaagttca ccgccaagag catcagctcg atggacatca
    16021 gcaataccag cacgtttttg cggttcataa agatacccat tgcgctgata ccgaacagga
    16081 gcgcacccaa taccagataa tgcgtcaagg taatcatgct ttgccctccc cttccggctt
    16141 gaggccgtct gaaacttcgc tctcttcggc agattcgact tgcggtttga ccgcttccat
    16201 tttcaccaga cgcatacggc cttgatcggc gcgtacttta acttggtcgg caggatccat
    16261 gcgtttcgga ttggtggttt tacggtaaac cagcgcaatc gccgccacca tacccaacag
    16321 cagcaatacc gccgccaatt caaacggcaa caggtagtcg gtataaatac ggctgcccaa
    16381 atcgcggata ttgttgtaat cggccggaat gtctttcatc agaccaaatg cggccaggtc
    16441 ggttttcggg ttgaccagaa tcaggatcag ggcaaccgcc aacaatgtgc cgaccacacc
    16501 ggcaaccggc gcatgacgcc agaaaccggc gcgcatttct tcaatgtcga tgttcaacat
    16561 catcacaacg aacaggaaca acaccatcac ggcgccgacg taaaccacca ccagcgtcac
    16621 gcccaaaaac tcggcctgca tcagcatcca aagcatcgcg ctcacgcaga aggtcagcac
    16681 cagatgcaaa gcggcgtgga cagggttttt ggcggtaacg gtacgaaccg caccgtacaa
    16741 aacgatggcg gcaagaatat agaacagaat cgcggaaaaa gtcattcgtc tgctccttaa
    16801 cgatacggcg cgtcagcggc tttgcgtttg gcgatttcag cttcgtattt gtcgccaatg
    16861 gccaaaagaa tcggcttggt catgtgcaag tcgccttttt tctcgccgtg gtattcaaaa
    16921 atatgggttt ccacaatcgc atcggtcggg caggcttctt cgcagaaacc gcagaagatg
    16981 cacttggtca ggtcgatgtc gtaacgcttg gtgcggcgcg tgccgtcttc gcgttcttcc
    17041 gattcgatgt tgatcgccat tgcggggcaa acggcttcac acaatttaca cgcgatgcag
    17101 cgttcctcgc cgttcggata acggcgttgc gcgtgcagac cgcggaaacg cacggattgc
    17161 ggcgttttct cttcgggaaa ataaattgtg tctttgcggg caaaaaagtt tttgagcgtt
    17221 acgcccatgc cttttaccaa ctcgccgagc agaaaggttt ttactaagtt agccatatta
    17281 tgttccctca aaacagggat ttcgttaggt attcaaaatc gctttgttca gacggcctca
    17341 agatgccgtc tgaaacttat ttccacaaat tcagcggtga aatcatccac acgcccaaaa
    17401 tcacgatgta ggcgaagccg atcggaatca gcactttcca gcccaaacgc atgatttggt
    17461 cgtaacggta gcgcgggaag gttgcacgga tccacagata ccagtacaac actgccgcca
    17521 ttttcacaaa catccagaat gcggaaggcg taccgataaa gccccagctt tgcgggaacg
    17581 gagacaacca gccaccgaga aacatcagcg atgtcagcgc ggcaatcaga atcatgaaaa
    17641 tgtattcggc aaggaagaac agcgcgaatg cgaagccgga atattcaacg tggtgtccgg
    17701 caacgatttc ggactcgccc tctgccacgt caaacggtgc gcggttggtt tcggcaacgg
    17761 cggaaatcag ataaacgatg aagatgggga agagcggcag ccagttccac gagaacacgg
    17821 aaccgcccgc gatgcctttg gcttgtgcgg caacgatgtc ggagaagttc atgctgcccg
    17881 ataccatcac aacgcacacc agcgcggcac tcatggcaat ctcgtaggaa atgctttgtg
    17941 cggaagcacg cattgcaccc aagaacgaat atttggagtt ggaagcccag cccgcgatga
    18001 tcacgccgta aaccgacagc gaggtaatca tcaggatgta caaaaggccg atattgatgt
    18061 tggtcagcac ccattcttcg ttgaacggaa tcactgccca tgctgcgaaa gacggagcaa
    18121 gcgacataat cgggccgatg tagaacaggg ctttgtttga cagcttcgga cgggttacct
    18181 ctttaaacaa gagtttgaac acgtcggcaa acggctgaat cagaccccac gggccggtta
    18241 cgttcggacc gacgcgaagc tgcatgaagc cgatgacttt acgttcgaaa tacgtcaggt
    18301 aggcaacggt cagaatcagc ggaatcagga taatcacgat tttgacgatg acggatacca
    18361 ccaagcctac ggtgatgccc aaatcgccca gaccgagcgt tgcggcaaag aggttttgga
    18421 accattcttg catgatcaag ctcccgccag ttcaatagtg tccatcaacg cacccagcgc
    18481 ggcattttcg gtatgcagcg gcagatgcac cacgttttca ggcaaaccgg catcggcttt
    18541 gacagcaacc gatacgcttg cgccgttttg tttggcgaca gcggtttgtc cgtcttgcag
    18601 gcccaagcgt cccaaagtgt tcggattcac acgcgcggca ggcacggcgg catggacggt
    18661 tgcctgcaac ggtgcggaac ggcgcacgat agaatcagtg tgataaatac cgacgccgcc
    18721 gacacggacg aggcggtctg atgccgtctg aacgccctcc cctgtccatg tgctgcggtt
    18781 gtccagtttg gacggcaggc tttccgcatc caacgcatct ttcagaatcg cagcggtatc
    18841 gtggtattca aaaccttgca ggtcaaacag gttgcccaat acacgcaaca ctttccacat
    18901 cggacgcgaa tcgccgaagc cttgtaccac gccgtgaaag gattgcagac ggccttccat
    18961 attgatgaag ctgcccgatg tttcggtaaa cggcgcaatc ggcagcaata cgtcgcacac
    19021 gtccagcagc gtttcgctga caaacggtgt aaacgccatc acgcttttcg cctgtttcaa
    19081 cgcggccacg gcttttgcac cgtcaaccat atcgatttcc ggctcgacgt tgagcagcaa
    19141 gactgcctgt ttcggcgcgt ttgccatttc ggcaacgctc tcgccggagt ttacgcccaa
    19201 gacatccgca ccgacgctgt tggcgacttg cggcaaaata cccagcactg cgccggtcgc
    19261 gtctgccagc tcttgcgcgg cggcataaat ggcggcgtaa tcaggatggt tttgcacttc
    19321 cgcgcccaaa atcaccgctg ctttttcagc gtttttcagg ctggcggtaa cggcgtgttc
    19381 cgcattggca gacaggtttt tcagacggcc tgcccactcg tcgggatgtg cggcttcttg
    19441 aaacagaagc ggcataaaca attcttcctt gctgccggcc aatacgctca aggccatacg
    19501 gtctttggcg gcgcggcgca ggcgggcggt caggagcggc tgttctttgc gcaagttcgc
    19561 gccgactacc aatacggcat cgttgtcagc caaagattca atgctttgtc ccaaccattg
    19621 cgcaccctta atgccgtctg aaagacgttt gtcttgttga cgcaaacggg ttgcaaagtt
    19681 tttaacaccc aagccgtcgg caagtttttt ggccagatac agctcttcaa ccgtattcat
    19741 cgggttcgcc caaatgccga cttggttttg gttgccgtct ttggcgatac attcaatcgc
    19801 gctgcggaca tattccaatg cggttttcca atccacgtcc atccactcgc cgccctgttt
    19861 gattttcggg tttttcagac ggctttcgtg atacaggcct tcgtaggcaa aacggtcgcg
    19921 gtcggacaac cagcattcgt taatcgcttc gttttccagc ggcagtacgc ggcggacggt
    19981 atggtctttg gtttgtacaa tcaggttact gcccaaagcg tcatgggcgg aaacggattt
    20041 gcggcggttc aattcccaag tacgcgcgtt gaagcggaac ggtttgctgg tcaatgcgcc
    20101 gacaggacac aaatcgatga cgttgcccga cagctcggtt tccaccgttt tgccgataaa
    20161 gggcatgatt tcggagtgtt cgccgcgatt caccatcgca atttcttgca aaccggcgat
    20221 ttcttcagtg aaacgaacgc agcgggtgca gtggatacag cggctcattt cctcggcgga
    20281 aaccaaaggc cccatgtctt tgccgacgac ggaacgtttt tcttcggtgt agcggctggt
    20341 ggtttttccg tagcccaccg ccaaatcctg caactggcat tccccgcctt ggtcgcaggt
    20401 cggacaatca agcggatggt tgatgagcag gaactccatc acgccttcct gcgcctctcg
    20461 ggcttttgcc gaatgcgtac gcacaatcat gccgtctgta accggcgtgg cacaggcagg
    20521 caggggtttt ggggcttttt ctacgttcac cagacacata cggcagttgg cggcgatgga
    20581 aagttttttg tggtaacaga aatgcggaat ataagtaccg agcttgtgcg cggcttcaat
    20641 caccgtcgcg ccctgctcca cagatacttg tttgccgtcg atttcgattt gtaacatggt
    20701 tcgttcctag ttacgggtat ttgataaata attttttatg gagatcgtct gaaaaatggg
    20761 tttcagacgg ccttttgagt ttcattgaca atcaatactg tttaaaacgt ttactgccac
    20821 cttgccgtca ttcccgcgta ggcgggaatc cattcttggg ttttcggtaa ctgcttttca
    20881 aatatcgggt tctgtaaatt ccactatgga ttcccgccta cgcgggaatg acggcaaagt
    20941 taaattttta gcattttgct tttaaccaat ataaaaccaa ctaaaactat aacttattta
    21001 ttatattttt aaatgactta aataactctt taacagcacg ctcattgtct tcatctgtag
    21061 gctcaaactt ttcacaccaa ttaattatat ttacatcgcc atgcaataac tctgcataac
    21121 atcctactgc atcgcaacta ccaccccgtg tccttgacgt gccaaaaata aaatcacaat
    21181 tatgcgaata aagtttgtat aaatttctcc taacctcgta ttcattatca ccagatgaat
    21241 aaaaaccaat cctctgacct tcatgatcaa atactgcaac aaaatctaag ccgtttccat
    21301 gtctttcaaa aaagactaga aatttagaaa atttccgaca aatctgatta aaaagcgtat
    21361 tgagtgtcgt actcttacct ttgttggctg caccgtatag aataaaaatt ttagcttcca
    21421 ccattaccac cctccccact tatgctcttt catcggtccg ccgtgttcga tgtaatgcac
    21481 aaactcatca cggaaatgct tggtaaagct tcggacgggg aagacggcgg catcggcaag
    21541 ggcgcagatg gtgcggcctg ccatttggtt gccgacagaa tccagcaaat ccaaatcttc
    21601 cattttacct ttgccttcta cgatgcggtg gacgatgcgg taaagccagc cggtgccttc
    21661 tcggcaaggc gtacattggc cgcaagactc gtcgtagtag aagtagctca ggcgctcaag
    21721 ggctttcacc atgcacacgt cttcgtccat gacgataatc gcgccagaac ccagcatcga
    21781 gcctgctttg gaaatcgagt cgtagtccat atttgtctgc atcatgatgt cggcaggcaa
    21841 tacgggcgcg gacgaaccgc cgggaatgac ggctttgagt tttttgccgc cgcgcatacc
    21901 gcctgccatt ttcaagactt cggcaaacgg tgtgcccaat ggcacttcat agttgcccgg
    21961 acgctcgaca tggccggaaa tacagaataa tttggtaccg cctgcattcg gaataccttt
    22021 atcggcaaat gcctgtccgc cgtcacggat aatgaatgaa acggaggaga aagtttcggt
    22081 attgttgatg gtagtcggtt tgccgtacag gccgaacgaa gcagggaatg gcggtttaaa
    22141 gcgcggctgg ccttttttgc cttccagcga ttcaagcaat gcggtttctt cgccgcagat
    22201 gtatgcaccg tagccgtggt gggcgaagag ttcgaattca aaatccgaac ccaaaatatt
    22261 tttacccaaa aagcctgcgg cacgcgcctg ctccaaagcg gcctcaaagc gttggtagcc
    22321 ttcaaaaatt tcgccgtgga tatagttgta accggctttc gcgcccatcg cgtaaccggc
    22381 gataatcatg ccttcaatca gggcatgggg gttgaacata ataatgtcgc ggtctttaaa
    22441 tgtacccggc tcgccttcgt cggtgttgca aacgacgtac ttttcgccgg ggaaagaacg
    22501 gggcataaag ctccatttca aaccggtcgg gaagcccgca ccgccacgac cgcgcaagcc
    22561 ggaggttttg acttcgtcaa tcacatcggt ttgcgagatg ttttcggaca ggattttacg
    22621 cagggcggta taaccgccac gtttgacgta ttcgtccaat gtccagcaat cgggattggc
    22681 ggtatccact tggtcaaaaa tcacgcctga ttggtaaata gccatttttg gtgtgcctgt
    22741 ttgttttcgt atcggttgcg gccgctgttt cagacgacct taagatgtct ttgtgtaccg
    22801 gcttgtaacg tcgtctgaaa taaaatctag tttatcaaat cgatattttc agacgacctt
    22861 taatcgtttt tgttggatct cgaccacttg cttgtctgcc gtcattcccg cgcaggcggg
    22921 aatccatcct caatggtaag caatgtctta ttaaattcag aaaccgaatc ttaccggtgg
    22981 attcccgcct gcgcgggaat gacggcattt cggtatttca gtagggcgga ttcttaaatc
    23041 cgacattttg cctttttacc cactctgtcg gatacaagta tccgacctac gtttaaatcg
    23101 tcgtttcaga cgacctactc caactccgcc agtttcttct caatcgcctc ttcagtcata
    23161 aagctgcaca ttttatgatt attcaacaac ataacaggag catcgccgca cgcccccatg
    23221 cattcgcctt cgacaagggt aaatttgccg tcaggcgtgg tttcgccgta gctgataccg
    23281 agtttttgtt tgaggtattc gccggttgcc ataccgccgc gcagggcgca gggcaggttg
    23341 gtacaaacgg tcagtttgta tttgccgaca ggctcaaggt cgtacatatt gtagaaggta
    23401 gcgacttcgt aggcttgtgc aggcgagatg ccgatatagt ctgcaacaaa ggcgatggtt
    23461 tcgggggcga gccagccttt ttcggtttgt gcaatacgca atgcgcccat aatggcagag
    23521 cggcgttggt cggcaggata ttttgccaac tcaatatcaa tttgttttaa ggattctgcg
    23581 gataacatta tcggtcaacc tccccgaata cgatgtcctg cgtaccgatg atggcaacga
    23641 cgtcggcgag catgtggcct tttgccattt cgtccatgcc ttgcagatgg gcgaagccgg
    23701 gtgcgcggat tttcaggcgg tagggtttgt ttgcgccgtc tgaaatgatg taaacgccga
    23761 actcgccttt cggatgttcg acagcggtgt aggtctcgcc ctcgggaacg tgcataccct
    23821 cggtaaagag tttgaaatgg tgaatcaggt cttccatacc tgttttcatt tcggtacgtt
    23881 tgggcggagc aaatttgtgg tttgtggtaa tgaccggacc cggattgaca cgcaaccact
    23941 cggaacattg tttgatgatg cgtacggatt gacgcatttc ttccatacgg cagaggtagc
    24001 ggtcgtagca gtcgccgttc acgccgacag ggatgtcgaa atccattttg tcgtacactt
    24061 cgtaaggctg tgtcttacgc acgtcccatt ccacgcccga accgcgcaac atcacgccgg
    24121 taaagccttt ttgcatggca cgttcggggg agacgacgcc gatgccgacg gtacgctgtt
    24181 tccaaatacg gttgtcggtc aggagggttt cgagtgtgtc gatgtttttc gggaaacgtt
    24241 cgcagaaggc atcgataaag tcgagcatcg tgccttcgcg ggattcgttg agctgcttca
    24301 atactttggc attgcggaat ttgctgccct cgtatttggg catgaagtcg ggcaggtcgc
    24361 ggtaaacgcc gccgggacgg aagtaggctg cgtgcatacg tgcgccggac acggcttcgt
    24421 acaagtccat caactcttcg cggtcgcgga aggcataaag gatggcggtc atcgcaccaa
    24481 tgtcgaatgc gtgcgaaccg atgcccatca aatgattgag gatgcgcgtt acttcggcga
    24541 acatcacgcg gatatattgg gcgcggatag gtacatcgat accggcaagt ttttctactg
    24601 ccaagcaata cgcctgctcg ttgaccatca tggaaacata gtccaagcga tccatatagg
    24661 gcagggcttg cagataggtt ttggtttcag ccagtttttc agtacctcgg tgcaggaggc
    24721 cgatatgcgg gtcggcacgg acgatttgtt cgccgtccag ctccaaaatc atacgcaata
    24781 cgccgtgcgc cgcagggtgt tgcgggccga agttgatggt gtagtttctt aatttattgg
    24841 ccaccgtagt tctcctcacg gacgatacgc ggcgtgatct cgcgcggctc gatggtaaca
    24901 ggttggtaaa tcacgcgttt ttgctcttcg tcgtaacgca tttccacata gccggaaatc
    24961 gggaagtctt tgcggaacgg atgtccgacg aaaccgtaat cggtcaggat gcggcgtagg
    25021 tccgggtggt tgttgaacat gatgccgtac atatcgaagg cttcgcgttc gtaccaatcc
    25081 gcgctgttgt aaatatcgac tacggattcg actacaggga agtcgtcgtc tgaaacccag
    25141 acgcgtacgc ggatgcgttg attgttttta acggaaagca actgactgac gacggcaaag
    25201 cgtttgccct gccatacttc gtttttgtaa gtgctgtaat cgacaccgca caaatcgacc
    25261 agaagctcga aatgcagctc ttcatgatcg cgcaatgcgg tcatgactga aatatagtgt
    25321 tcgggcagac actcgacggt aatctcgccc aaagctgaaa tgactttgcc tgcctgattg
    25381 cccaaaacgc ggctgacggt ttcgtataag ttttgaatgc ttgccatatc ttcctcctct
    25441 tactcgtcac gcgcgatggt ggaagtgcgc ttgatttttt gttggagctg aatcaggccg
    25501 taaatcaggg cttccgcagt cggcggacaa cccggcacat aaacgtctac cggcacgacg
    25561 cggtcggcac cgcgcacaac ggaataagaa tagtgataat agccgccgcc gttggcacac
    25621 gagcccatag acaataccca gcgtggctcg gcgagctggt cgtatacacg gcgcagggct
    25681 ggcgccattt tgttggtcag cgtacctgcc acaatcatca ggtcggcctg acgtggggac
    25741 ggacggaaaa tgataccgaa acggtcaagg tcataacgcg ccatacccgc atgcatcatt
    25801 tccacggcgc agcaggccaa gccgaaagta accggccaca acgaaccggt acgcatatag
    25861 ttcaacaccg tatccgcgct ggtggtgatg aaaccttttt tcaaaacgcc ttctattccc
    25921 attccagcgc accttttttc cattcgtaaa caaagcctac cgtcagaacg acgataaaca
    25981 ccaacataga ccaaaagccg tacgcgccca aatctttgaa cacaactgcc cacggcaaca
    26041 tgaacgcgac ctccaaatca aacaggatga agaggatggc gacgaggtaa tagcgcacgt
    26101 caaacttcat cctcgcattt tcaaaggctt cgaaaccgca ttcgtaaggc gcgtcttttt
    26161 cggcatagtg gcgtttcggg cctaaaatcg tgccgagcag gataaacagt acgccggccg
    26221 cgaggccgac gaggataaag acaaagacgg gaaagtaagc ggacaacatg gttacaccca
    26281 aatccgttaa caaaatttct acaataattt cgtattttag cgaatttcaa aaaccattaa
    26341 aaggtaaata tcggcaaaac gcccaaaaaa acccaataaa tacaatcatg ctatgataac
    26401 gattcttatt tgattttata aggtcatata aatttttaca ccgtaattcg tg
//
LOCUS       DAXHNP010000008        26287 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.008, whole genome shotgun sequence.
ACCESSION   DAXHNP010000008 DAXHNP010000000
VERSION     DAXHNP010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.008"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(131..466)
                     /locus_tag="ACFM5C_000244"
     CDS             complement(131..466)
                     /locus_tag="ACFM5C_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6068028.1"
                     /translation="MFKDWKEHTALVKKSFGELGKAHPKMLQAYGALEQAAAAEALDA
                     KTRELIAIAVAITTRCESCISVHAAAAAKAGATDSEIAGALATAIALNAGAAYTYALR
                     ALEAVETQK"
     gene            595..1500
                     /locus_tag="ACFM5C_000245"
     CDS             595..1500
                     /locus_tag="ACFM5C_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HFC6068029.1"
                     /translation="MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLVHIVT
                     SGNGYLCIDGETSPRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQC
                     GNGQDMSLFCARFRYDTHADLMNGLPETVFLNIAHPSLQYVVSMLQLESKKPLTGTVS
                     MVNALSSVLLVLILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKM
                     VAAANMSRAQLMRRFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSE
                     THFGKAFKRQYHVSPGQYRKEGGQK"
     gene            complement(1562..2050)
                     /locus_tag="ACFM5C_000246"
     CDS             complement(1562..2050)
                     /locus_tag="ACFM5C_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6068030.1"
                     /translation="MKKYLIPLSIAAVLSGCQSIYVPTLTEIPVNPINTVKTEAPAKG
                     FRLASSHWTDVAKISDEATRLGYQVGIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYE
                     IYLRSAIDSQRGAINTEQSKLYIQNALRGWQQRWKNMDVKPNNPAFTNFLMEVMKMQP
                     LK"
     gene            2197..3099
                     /locus_tag="ACFM5C_000247"
     CDS             2197..3099
                     /locus_tag="ACFM5C_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6068031.1"
                     /translation="MDTAKKDILGSGWMLVAAVCFTIMNVLIKEASAKFALGSGELVF
                     WRMLFSTVELGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTL
                     SYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGG
                     AMSGWAYLKVRELSLAGEPGWRVVFYLSVTGVAMSSVWATLTGWHMLSWQSAVYLSGI
                     GVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEELFWQEILGMCIII
                     LSGILSSIRPTAFKQRLQSLFRQR"
     gene            complement(3140..4270)
                     /locus_tag="ACFM5C_000248"
     CDS             complement(3140..4270)
                     /locus_tag="ACFM5C_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6068032.1"
                     /translation="MTKHLPLAVLTALLLAACGGSDKPPAEKPAPAENQNVLKIYNWS
                     EYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAG
                     AYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTD
                     KLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATA
                     LLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIAKRRAEEAGGKEKIRVMMPK
                     EGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARELMEDE
                     FKNDNTIFPTEEDLKNSFIMVPIQPAALKFMVRQWQDVKAGK"
     gene            4475..7444
                     /gene="alaS"
                     /locus_tag="ACFM5C_000249"
                     /pseudo
     CDS             4475..7444
                     /gene="alaS"
                     /locus_tag="ACFM5C_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343549.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
     gene            complement(7532..8554)
                     /locus_tag="ACFM5C_000250"
     CDS             complement(7532..8554)
                     /locus_tag="ACFM5C_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6068033.1"
                     /translation="MLTKKEFEKFLDEVCTVLRQEAKNAPFKSQDIFENRVRALCIAK
                     IPAYADIVINPEPVPQIFPDVPIGEYGVEVKFTLKDTWRSVANSIQEKNKADGVQHIY
                     VIFGKMGGIPDVKWQLYEDSVIHVRTSHVPRFEVEIESDRPSLFEGFGISYAEFADLD
                     MHEKMEYIRKYARNRLKEGERLWWIEDIDAVDSHDLPLEVRLYTSLPQEEKIRLRAEA
                     ALVSPRIVCSGRAKHKYDNAVLYLITYRGVLCHQARDLFSAGSVANSAEDYRGGNYVE
                     KSLKLIEHEIEKAALEMDDALIVEYWGESVPTEKRLEYWIKMLDDLADGWIPSESLFN
                     GRYKAK"
     gene            complement(8608..9759)
                     /locus_tag="ACFM5C_000251"
     CDS             complement(8608..9759)
                     /locus_tag="ACFM5C_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6068034.1"
                     /translation="MTEFARKNWNKLAGDAIKAKMHEHGIGFIQLSELFLEQGESETA
                     NAICNKVNRGTFSHAFYLKCMELMTKQEKQEDREKKYKIISLFSGCGGMDLGFLGGFE
                     FLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGDIWQHLDEIPTSADIIIGGF
                     PCQDISINGKGAGISGSRSGLYKAMLSAVERVRPKIFVAENVKGLLMKHHRKDLETVL
                     SDFRNLGYQVDYYLLNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQA
                     IGDLVDKVEDEIANHIWSRAEKSPDQGSRKLDAERAGYTIRAECHGNIQWHYELPRRI
                     SMREAARIQSFPDNFIFQAKLRATERQIGNAVPPVLGWHIAAAVSKALK"
     gene            10382..10612
                     /locus_tag="ACFM5C_000252"
     CDS             10382..10612
                     /locus_tag="ACFM5C_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068035.1"
                     /translation="MFKTLKSIWQGLTQKGKIFPYQLAFTLLIPLRNWALSPQQITQR
                     LHFVPHHRICCGAGYFSCVGCASAHRFLIFAC"
     gene            10853..11797
                     /gene="tehA"
                     /locus_tag="ACFM5C_000253"
     CDS             10853..11797
                     /gene="tehA"
                     /locus_tag="ACFM5C_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HFC6068036.1"
                     /translation="MSASKKFPIPLSYFSIALGLFALGLSWRYGASVGLLPALAAESL
                     LAVASVVWLLLVAAYLIKMFAYRNDFLSDLRDLVQCCFISAIPITAMLEGLALKPYQA
                     GAAAVLIYVGVAGQLAFSMYRAAGLWRGLHSLEATTPIIYLPTVATNFVSASSLAALG
                     HHDYAALFFGAGMFSWLSLEASILGRLRTAAPVGTAARGVVGIQLAPAFVGCGAYFAV
                     GGKVDGFALALIGYGCLQLLFLLRLTRWFWEGGFTMSFWGFSFGFAAMAGCGLHLAAS
                     GILSGLGLTLATAGSAGVALLLVGTLHRIATGRFLVRG"
     gene            complement(11871..12554)
                     /locus_tag="ACFM5C_000254"
     CDS             complement(11871..12554)
                     /locus_tag="ACFM5C_000254"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HFC6068037.1"
                     /translation="MELVFIRHGQSEWNAKNLFTGWRDVKLSEQGLAEAAAAGKKLKE
                     NGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGQLQGLDKKQTAE
                     QYGDEQVRIWRRSYDTLPPLLDKDDAFSAHKDRRYAHLPADVIPDGENLKVTLDRVLP
                     FWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDEDIMGLEIPTGQPLVYKLDDN
                     LKVLEKFYL"
     gene            12852..15155
                     /gene="parC"
                     /locus_tag="ACFM5C_000255"
     CDS             12852..15155
                     /gene="parC"
                     /locus_tag="ACFM5C_000255"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HFC6068038.1"
                     /translation="MNMQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDG
                     QKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTL
                     RYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEP
                     LHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPA
                     PDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAK
                     ILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSR
                     IDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLK
                     FRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEIQAEDILEIR
                     LRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTL
                     VEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTV
                     LPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNSAKPVAMLTGLPEQHYLLSS
                     SGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNR
                     ALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESEGRRGAAHKDRIPV
                     SLLEAKRGKKGKLLPISGSLKQLSSPK"
     gene            15176..16767
                     /locus_tag="ACFM5C_000256"
                     /pseudo
     CDS             15176..16767
                     /locus_tag="ACFM5C_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237220.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
     gene            16760..17227
                     /locus_tag="ACFM5C_000257"
     CDS             16760..17227
                     /locus_tag="ACFM5C_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004518841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6068039.1"
                     /translation="MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNK
                     LDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPVAVITAFGNADQAQEALRCGAFD
                     PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQADKRLGISFRSMRYRMERLNIG"
     gene            17331..18083
                     /locus_tag="ACFM5C_000258"
     CDS             17331..18083
                     /locus_tag="ACFM5C_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6068040.1"
                     /translation="MTDILIDNTATETVRTLIRAFPLVPVSQPPEQGSYLLTEHDTVS
                     LRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAKPTVWDATAGLGRDSFVLA
                     SLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVQTQG
                     KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEAVLLHTARQTAKKRVVVKRPR
                     LGEHLAGQAPAYQYTGKSTRFDVYLPYEADKG"
     gene            complement(18468..18674)
                     /locus_tag="ACFM5C_000259"
     CDS             complement(18468..18674)
                     /locus_tag="ACFM5C_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HFC6068041.1"
                     /translation="MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILF
                     LVLGLGVFGFVFKELLIKFLVLPK"
     gene            complement(18761..19930)
                     /gene="metZ"
                     /locus_tag="ACFM5C_000260"
     CDS             complement(18761..19930)
                     /gene="metZ"
                     /locus_tag="ACFM5C_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HFC6068042.1"
                     /translation="MSKKLHPQTLAIRGGKEQTEYREHNQALFLTSSFMWDNAQHAAD
                     LFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDH
                     VVSSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLG
                     EVADLEALAELAHGIGAILVVDNSLLSPVGSQPLKHGADISVSSATKAIDGHGRVMGG
                     VLAGSEELMAQAAVYCNSCGLAMSPFNAWQLLSGVETLSLRMEKQFDNALKIAQWLQA
                     QPQVQAVYYTGLPDHPQAALIRKQQNGGGIVIGFEVADQAAAWKVVDGVELFSRTANL
                     GDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR"
     gene            complement(20075..20836)
                     /locus_tag="ACFM5C_000261"
     CDS             complement(20075..20836)
                     /locus_tag="ACFM5C_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068043.1"
                     /translation="MDANKEPNWEKRLENLRQTRRMKAVPTYAPLSRPSETGTDAPVP
                     KLDDESRARVLKAYLKKWQEEHNAAVADCGEEVETDPMIVLQENWLNAQASLQMSVSE
                     KHIESRRRIRFDAQKDSAEFETGQIEGRENADAAESGTAADGVAENGEGGAEEALMPV
                     QINILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQL
                     QQMLHEQAGAVVEDVLEHDVRKILNDIKYELKYKR"
     gene            20936..21187
                     /locus_tag="ACFM5C_000262"
     CDS             20936..21187
                     /locus_tag="ACFM5C_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068044.1"
                     /translation="MGSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPAETAEIA
                     VESIQLAFEDALAELSYEDSPHTDLFHDVTYAFFREKER"
     gene            21239..22045
                     /locus_tag="ACFM5C_000263"
     CDS             21239..22045
                     /locus_tag="ACFM5C_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6068045.1"
                     /translation="MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASN
                     AEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMS
                     GVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSDDLKNMNKVGVVTGYTGDFSVS
                     KLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTLPDF
                     TTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYFAKEDEQAAK"
     gene            22352..23875
                     /locus_tag="ACFM5C_000264"
     CDS             22352..23875
                     /locus_tag="ACFM5C_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HFC6068046.1"
                     /translation="MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAA
                     KDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAY
                     TWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGDKVEVTCAAKGGGSENKSKLA
                     MLNPSDNIVDWVLKTIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQ
                     EKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAM
                     IPNCAATRHVEFELDGSGPVELTPPRVEDWPDLTYSPDNGKRVDVDKLTKEEVASWKT
                     GDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAG
                     PTTATRMDKFTRQMLEQTGLLGMIGKSERGAAACEAIADNKAVYLMAVGGAAYLVAKA
                     IKSSKVLAFPELGMEAIYEFEVKDMPVTVAVDSKGESIHATAPPQWQAKIGIIPVKS"
     gene            23973..25385
                     /gene="trkA"
                     /locus_tag="ACFM5C_000265"
     CDS             23973..25385
                     /gene="trkA"
                     /locus_tag="ACFM5C_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HFC6068047.1"
                     /translation="MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRL
                     DVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRS
                     SEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRV
                     RMVIIQARRGGLLVGRSIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEIL
                     FAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAE
                     WIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRV
                     IGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVV
                     AHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAETGETIMGHHTETVIQDGDHIIFFVS
                     RRRILNELEKLIQVKMGFFG"
     gene            26154..26229
                     /locus_tag="ACFM5C_000266"
     tRNA            26154..26229
                     /locus_tag="ACFM5C_000266"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26188..26190,aa:Glu,seq:ttc)
BASE COUNT         6395 a         7356 c         6456 g         6080 t
ORIGIN      
        1 cgcttacccc ttgtttctca aatgccgtct gaaaaaacgg ctgcatatgt tgtctacaaa
       61 atatcgggaa gcataacaga caaaatgccg tctgaaatat tttcagacgg catttcttat
      121 ccgaaacgga ttatttttgc gtttcaaccg cttccaatgc acgcagggcg taagtgtaag
      181 cggcaccggc attcagggcg atggcggttg ccaatgcgcc tgcgatttcg ctgtcggtcg
      241 caccggcttt ggcggcagcg gcggcgtgaa cgctgatgca gctctcacaa cgtgtggtaa
      301 tggcaacggc gatggcaatc agttcgcgcg ttttggcatc aagtgcttcg gcggcggcgg
      361 cctgttccaa tgcgccgtag gcctgcagca ttttaggatg cgccttaccc agctcgccga
      421 acgatttttt aaccaatgcg gtatgttctt tccaatcttt aaacattttc ttttcctttc
      481 tcttgcgttt aaccctgata cgcgcttgcg tatctgtttt cgatgtgcgt attattgcaa
      541 ttattcagtt gtgtttctcg tttaatcatc tcattttatg gttcaaaaag atttatggac
      601 attctggaca aactggtcga tttcgcccaa ttgacgggca gtgtggatgt gcagtgcctt
      661 ttgggcggac aatggtcggt acggcatgaa accttgcaac gcgaaggact ggtacacatt
      721 gttacatcgg gcaacggcta tctctgcatc gacggcgaaa cttccccgcg tccggtcagt
      781 acaggggata ttgtattttt cccgcgcggc ttgggtcatg tgttgagcca cgacggaaaa
      841 tgcggagaaa gtttacaacc ggatatgcgg cagcacggtg cgtttacggt caaacagtgc
      901 ggaaacggac aggatatgag cctgttttgc gcccgtttcc gctacgacac ccacgccgat
      961 ttgatgaacg ggctgcctga aaccgttttt ctgaacattg cccatccgag tttacagtat
     1021 gtggtttcaa tgctgcaact ggaaagcaaa aaacctttga cggggacggt ttccatggtc
     1081 aacgcattgt cgtccgtcct gctggtgctt atcctgcgcg cctatctcga acaggataag
     1141 gatgtcgaac tctcgggcgt attgaaaggt tggcaggaca aacgtttggg acatttaatc
     1201 caaaaggtga tagacaaacc ggaagacgaa tggaatgtcg acaaaatggt ggcggctgcc
     1261 aatatgtcgc gcgcgcaact gatgcgccgt ttcaaaagcc gggtcggact cagcccgcac
     1321 gcctttgtga accatatccg cctgcaaaaa ggcgcgttgc tgctgaaaaa aaacccggat
     1381 tcggttttgt cggtcgcact gtcggtaggc tttcagtcgg aaacgcactt cggcaaggcg
     1441 ttcaaacggc aatatcacgt ttcgccgggt caataccgga aagaaggcgg gcaaaaataa
     1501 atcggggctt caaacgcaaa tgccgtctga aaaggctttc atacagcatt tgcgtaccgc
     1561 gtcatttcaa gggctgcatc ttcatcactt ccatcaaaaa gttggtaaat gcggggttgt
     1621 tgggtttgac atccatattt ttccaacgct gctgccagcc gcgcaaggca ttctggatat
     1681 acagcttgga ctgttccgta ttgattgcgc cccgctggct gtctatcgcc gaacgcaggt
     1741 agatttcata catactgtca tcgacggcat tgcgtccgac caggcgtttt ctgaagttgt
     1801 tcagatattg cgccgcctga accttggtca ttttaccgat acccacctga tagcccaagc
     1861 gcgtcgcttc atcgctgatt ttggcaacat ccgtccaatg cgaagaggca aggcggaaac
     1921 cttttgcagg tgcttccgtt ttgacggtat tgataggatt cacggggatt tccgtcaatg
     1981 tgggcacata aatagactgg cagccggaaa gaactgccgc aatggaaaga gggataaggt
     2041 attttttcat gcccccatta taatcaagtt tgccttgaga aaacaaattg ttcggcaaga
     2101 aaaataaaat ttcggcatca gaagcaggca aaaacacatt ccacaagcct tgccgcaagg
     2161 tttacaatcc gaccgtcctt atcgcaacga ccgtttatgg ataccgcaaa aaaagacatt
     2221 ttaggatcgg gctggatgct ggtggcggcg gtctgcttca ccattatgaa cgtattgatt
     2281 aaagaggcat cggcaaaatt tgccctcggc agcggcgaat tggtcttttg gcgcatgctg
     2341 ttttcaaccg ttgagctcgg ggctgccgcc gtattgcgtc gggacacctt ccgcacgccc
     2401 cattggaaaa accacttaaa ccgcagtatg gtcgggacgg gggcgatgct gctgctgttc
     2461 tacgcggtaa cgcatctgcc tttggccacc ggcgttaccc tgagttacac ctcgtcgatt
     2521 tttttggcgg tattttcctt cctgattttg aaagaacgga tttccgttta cacgcaggcg
     2581 gtgctgctcc ttggttttgc cggcgtggta ttgctgctta atccctcgtt ccgcagcggt
     2641 caggaaacgg cggcactcgc cgggctggcg ggcggcgcga tgtccggctg ggcgtatttg
     2701 aaagtgcgcg aactgtcttt ggcgggcgaa cccggctggc gcgtcgtgtt ttacctttcc
     2761 gtgacaggtg tggcgatgtc gtcggtttgg gcgacgctga ccggctggca tatgctgtct
     2821 tggcagtcgg cggtttatct gtcgggcatc ggcgtgtccg cgctgattgc ccaactgtcg
     2881 atgacgcgcg cctacaaagt cggcgacaaa ttcacggttg cctcgctttc ctatatgacc
     2941 gtcgtttttt ccgccctgtc tgccgcattt tttctgggcg aagagctttt ctggcaggaa
     3001 atactcggta tgtgcatcat catcctcagc ggtattttga gcagcatccg ccccactgcc
     3061 ttcaaacagc ggctgcaatc cctgttccgc caaagataaa aaatgccgtc cgaacatcct
     3121 tcagacggca tatcgggctt tatttccccg ccttcacatc ctgccactgg cgcaccataa
     3181 acttcaatgc cgccggctgg ataggcacca tgataaagct gtttttcaaa tcctcctcgg
     3241 ttgggaaaat cgtattgtcg tttttaaatt cgtcttccat cagctcacgc gccggcttgc
     3301 tcgaaggcgc ataagtaacg aaattgccgt ttttcgccga cacttccgga tcgaggaagt
     3361 cgttgatgta tttgtgcgcg ttggcgacgt ttttcgcatc tttcggaatc acgaaagaat
     3421 ccacccaaat ccccacgccc tctttgggca tcatcacgcg gattttttcc ttgccgcccg
     3481 cttcttcggc acggcgtttg gcgatgttca aatcgccgcc gaaaccgatt gttacgcagg
     3541 tatcgccgcg cgccaaatca tcgataaagc cggacgaagt aaagcgtttg atattggggc
     3601 ggtttttctt gagtagggcg gttgcctccc tgatgtcttc cgtattgctg ctgttcgggt
     3661 ttttacccaa atagttcaac accataggat agatttccgc cgcgctgtcc aaatagctga
     3721 tgccgcattg cttgagtttg gacgtgtatt cggggtcgaa caccaaatcc cactggttgt
     3781 ccggcagctt gtccgtaccc aaagcctttt tcacgcgttc ggtattgatg gcgaaggtat
     3841 ttgtccccca ataaaacggc acggcgtatt cgtggccggg atcgaccccg tccatcagcc
     3901 tcatcatttc agggttgagg tgtttataat tgggaatcag cgacttatcg attttctgat
     3961 acgcacctgc cttaatctgc ctgcccacaa acgcattgga cggcgcgaca atgtcgtaac
     4021 cggacttgcc tgtcagcacc ttgctttcca gcgtttcatc gctgtcgtac acatcataag
     4081 taaccttgat gccgtttttc ttttcaaaat cggcaacggt ttccggatcg acatattccg
     4141 accagttgta aattttcaat acgttttggt tttccgccgg tgccggtttt tcggcaggcg
     4201 gtttgtccga accgccgcac gctgcaagca gcaaagcagt caggacggcc aggggcagat
     4261 gtttggtcat tatcattcct tgcatatcgg gttggagaaa gcggccatta tagccgatat
     4321 tggcaacagg gcttcagacg gcattcaaaa tcccgccaca ctcttccgaa aaccgccgct
     4381 tccatagcta gaaacaggga tttgcggtaa gataccgccg ttcgttttcc ctgcttttac
     4441 catgacaaga catttgagag acattgaaaa aattatgaaa acctccgaac tgcgccaaaa
     4501 attcctaaaa ttttttgaaa ccaaaggcca caccgtcgtc cgctcttcca gcctcgtgcc
     4561 gcacgacgac ccgaccctgc tgtttaccaa cgcgggcatg aaccagttta aagacgtatt
     4621 cttaggtttc gacaaacgcc cgtacagccg cgccaccacc gcgcaaaaat gcgtacgcgc
     4681 aggcggcaag cacaacgact tggaaaacgt cggctacacc gcccgccacc acaccttctt
     4741 tgaaatgatg ggcaacttct ccttcggcga ctacttcaaa cgcgacgcca tccatttcgc
     4801 ttgggagttt ctgacttccc ccgaatggct caacatccct aaagacaaac tgttggcgac
     4861 cgtttacgca gaagacgacg aagcctacaa catctggttg aacgaaatcg gtatgccgtc
     4921 tgaacgcatc gtccgcatcg gcgacaacaa aggcgcgaaa tacgcgtctg ataatttttg
     4981 gcaaatgggc gacaccggcc cttgcggccc ctgctccgaa attttctacg accacggcga
     5041 agaaatttgg ggcggcattc ccggcagccc cgaagaagac ggcgaccgct ggatcgaaat
     5101 ttggaactgc gtatttatgc agttcaaccg cgacgaacaa ggcaatatga atccgctgcc
     5161 caagccgtcc gtcgataccg gcatgggttt ggagcgcatg gcggcagtaa tgcaacacgt
     5221 ccacagcaac tacgaaatcg acttgttcca agacctgctc aaagccgttg cccgcgaaac
     5281 cggcgcagct ttcagcatgg aagaaccaag cctaaaagtc atcgccgacc acatccgctc
     5341 ctgctcattc ctgattgcag acggcgtatt gccttccaac gaaggccgcg gctacgtatt
     5401 gcgccgcatt atccgccgcg ccgtgcgcca cggttacaaa ctgggtcaga aacaagcatt
     5461 tttctacaag ctcgtgcctg atttggtgaa agcgatgggc gacgcgtatc ccgagttgaa
     5521 agagaagcag acgcaaatta tggaagccct gcgcgcggaa gaaagccgct tcggcgaaac
     5581 gctggaaaaa ggcatgggct tgttcaacca agtctataat gaattgaaat tcaatcaaat
     5641 ttttgatctt ctggcgaaag aatttaaggt tacacctgtt gaagatattg atcttgatat
     5701 gtttagtaca agaaattttg taggaagaag tgctgaaatt ccttatatat caaatcaaca
     5761 ccctaacgtg gattatcccg ctcctatggg gaacgtaaat gaaaaaattt atgctatgcc
     5821 agtgagatta acagatggaa gaattggtat taatattttt cctactgatg aaactgcacg
     5881 cctaatcctt agcaatgatt ggaatagttt gcgcttctat tctttttgta attcgttgat
     5941 tacttattat caacagaaag gtcaattaga aacattaaaa ttgaacggcg aacacatctt
     6001 caaactctac gacacctacg gtttccccta cgacctgact gccgacatct gccgcgaacg
     6061 caatatcgaa ctggacgaag caggcttcga gcgcgaaatg gaagcccaac gcacacgcgc
     6121 acgcgccgca caaagcttca aagccaacgc ccaactgcct tacgacggtc aagacaccga
     6181 gtttaaaggt tatagcgaac gccaaaccga atccaaagtc ctcgccctct acaaagacgg
     6241 cgagcaagtc aacgaattga acgaaggcga cgaaggtgcc atcgttatcg actttacccc
     6301 gttctatgca gaatccggcg gccaagtcgg cgacgtcggc tatatctttg caggcgaaaa
     6361 ccgctttgaa gtacgcgata cccaaaaaat caaagcagcc gtattcggcc aattcggcgt
     6421 acaaacttca ggccgtctga aagtcggcga cagcgttacc gccaaagtgg acgacgaaat
     6481 ccgcaatgcc aatatgcgca accacagcgc gacccacctg atgcacaaag ccctgcgcga
     6541 cgtattgggc ggacacgtcg aacaaaaagg ctctttagtt accgccgaat ccacccgttt
     6601 cgacatttcc catccccaag cggtcactgc cgaagaaatc gccgaagtcg aacgccgcgt
     6661 caacgaagcc gttttggcga acgttgccgt caatgcagcc attatgagca tggaagacgc
     6721 gcaaaaaacc ggcgcgatga tgctcttcgg cgaaaaatac ggcgaagaag tgcgcgtact
     6781 gcaaatgggc ggtttctcta ccgaattgtg cggcggcaca cacgtttcac gcaccggcga
     6841 catcggcctc ttcaaaatca tcagcgaagg cggtattgcc gcaggcgtgc gccgtatcga
     6901 agccatcacc ggcctgaacg cactcaaatg ggcgcaagag caagagcgtt tggtgaaaga
     6961 cattattgcc gaaaccaaag cccaaaccga aaaagacgta ctggcaaaaa tccaagcagg
     7021 cgcggcacac gccaaagcat tggaaaaaga attggcacgc gccaaagccg aactcgccgt
     7081 ccacgcaggc gccaaactct tggacgatgc aaaagacttg ggcgcagcca aactcgttgc
     7141 cgcccaaatc gaagccgacg cagccgccct gcgcgaaatc gttaccgatt taaccggtaa
     7201 atccgacaac gccgtgattc ttttagcggc agtaaacgac ggcaaagtct ccctgtgcgc
     7261 cggcgtatcc aaaccgttga ccggcaaagt gaaagcaggc gatctggtta aatttgcagc
     7321 cgaacaagtc ggcggcaaag gaggcggcag accagatttg gcacaggcag ggggcacgga
     7381 tgcaggcaaa ttgcccgccg tgttggatag cgtgaaagac tgggtcggcg cgaagctggc
     7441 ttgatggaga aaggcagcct gaaagggatt caggctgcct tttgtgttaa agatgccgtc
     7501 tgaaagatat tttcagacgg cctctgtcag tttatttggc tttataccta ccattgaata
     7561 gcgattcaga aggtatccag ccatctgcca aatcatccaa catcttaatc caatactcta
     7621 ggcgtttttc tgtcgggacg ctttctcccc aatattcgac aattagagca tcatccattt
     7681 ccaaagcagc tttttcaatt tcatgctcaa tcaattttaa agatttttct acatagtttc
     7741 cgccacggta gtcttccgcc gagttggcaa cgctgcccgc actgaataag tcccgcgcct
     7801 gatgacaaag cacaccgcga taggtaatca gatacaggac ggcattatcg tatttgtgct
     7861 tcgccctgcc tgagcagaca atacgggggg agactaatgc tgcttcagct cggaggcgga
     7921 ttttttcttc ctgcggcagg gaagtgtaaa ggcgcacttc caaaggcaga tcatggctgt
     7981 ctactgcgtc aatgtcttct atccaccata accgctcgcc ttctttcagc ctgttacggg
     8041 catattttcg gatatattcc attttttcat gcatatccaa atcggcaaat tcagcatagg
     8101 aaataccgaa accctcaaac agagacggtc gatcagattc tatttctacc tcaaagcgcg
     8161 gaacatgcga tgtgcggaca tgaattacgc tatcttcgta aagttgccat ttcacatcgg
     8221 gaatgccccc catttttccg aatatcacat agatatgctg tacaccgtca gctttgtttt
     8281 tctcttggat actgtttgct acgcttcgcc aagtatcttt tagcgtgaat ttgacttcta
     8341 cgccatattc ccctattgga acatcgggga aaatttgcgg cacaggttca ggattgataa
     8401 ctatgtcagc ataagcggga atttttgcaa tgcacagcgc acgaactctg ttttcaaaaa
     8461 tatcttggga tttgaaaggt gcgttttttg cctcttgcct caatacggtg caaacctcgt
     8521 ctaaaaactt ctcaaactcc ttttttgtca gcataatgca ttaccactta aaaatataaa
     8581 gtagtaattt tatcttattt aacagggtta tttaagtgcc ttactgacag cggcggcgat
     8641 gtgccaccct aaaacaggag ggacggcgtt gccaatttgc cgttctgtgg cacgcaattt
     8701 tgcctggaaa ataaaattgt cgggaaacga ttggatgcgc gccgcctcac gcatggagat
     8761 gcggcggggt aattcgtaat gccactgtat gtttccatgg cattctgccc taatagtgta
     8821 gcccgccctt tcggcatcca attttcgact accttgatcg gggctttttt ctgctctact
     8881 ccaaatatgg ttggcaattt cgtcttctac tttgtcgacc aaatcgccta tagcctgtct
     8941 ggctgttaca tagctgttgc tggtatttgt tttttcaatc tgtatttcgg gaatttcagg
     9001 tagccttcca acgataataa ctcgctcccg agtctgtgga acaccgtaat cggctgcatt
     9061 cagcaagtag taatctacct gataacccaa attgcgaaaa tctgaaagca ctgtttccaa
     9121 atctttccga tgatgcttca tcagtagccc tttgacattt tcagcaacaa atattttggg
     9181 gcgaacgcgt tcaacagcag acaacatggc tttatacagc ccgctgcggc tgcctgaaat
     9241 acctgcacct ttaccattaa tagaaatatc ctgacaagga aagccaccga taatgatgtc
     9301 tgcgctagtg ggtatttcat ccaaatgctg ccaaatatca ccatgtacaa tgtgatttcc
     9361 taagttgtgg cggtaggttc taacagcgtg ttcgtcgatt tcgttcgccc aaataatatc
     9421 aaaatcatgt ttgtcataag tacggtttaa aaactcaaag ccccccagaa aacccaaatc
     9481 cattccgcca caaccgctaa ataaagaaat aattttatat tttttttcgc ggtcttcttg
     9541 cttttcctgt ttggtcatta actccataca tttaagataa aaagcatggg aaaaagtacc
     9601 tctatttact ttgttacaaa ttgcatttgc cgtttcactt tccccttgct ccaagaataa
     9661 ttctgataat tgtataaagc caattccatg ctcatgcatt ttggctttta tggcatctcc
     9721 agctaacttg ttccaatttt ttcgtgcaaa ttcggtcatg gttaatcttt cagtcattca
     9781 taaatgacat tattttagcg ttttttataa tttaagccaa gatttaaaat ctacctttag
     9841 gtttacaggc cgtctgaaaa caaaaatctc gttttcagac ggcctttttc cgctaaaatc
     9901 cccctaccgt ccaacccgaa acaaggagaa ccatcatgca agttcctact tccgccatca
     9961 tcaacggcga atttgccgac aaatacggca aacgcggcag caagccgtag ccagcacccc
    10021 tgtcaaccgc gtgcgtggct agaccacaca ccctaccact gcgggcgacg caaaccttaa
    10081 gattgaggtg tagggtgtgt gcggtacgca cgcacgcggt ttttgttact accgaatgat
    10141 tccaaaccat gccgtaatcc agtcagcagc aaactcagct tgggtcatgt accaacaaaa
    10201 ctcaatatca aaggccgtct gaagaataat tttcagacgg cttctctcta tcaaaagcag
    10261 cctgcacatt caaaaatcga agtgcaggct gctttttgtg atgattggaa aaaacacaca
    10321 ctatttttat actgtatatt gtgcaggtac aaagtaaaac gaattaccca aagaaattcc
    10381 catgtttaag acgctcaaaa gcatttggca gggacttacg caaaaaggca aaatcttccc
    10441 gtaccaactg gcattcacgc tgctgattcc tttgcgtaac tgggcgcttt caccgcaaca
    10501 aatcacgcaa cggctgcact ttgttccgca ccaccgaatt tgctgcgggg cgggttattt
    10561 cagttgcgta ggatgtgctt cagcccaccg tttcctcatt tttgcttgtt aattggtggg
    10621 ctgaagccca cactacggtt aatacggtta ctgattcgtt tccccctgca tccgaatcac
    10681 gccgcacacc gcaaaaaacg cgcgcccgat gcgcaaccgc ttccgacatt tggcgcaatg
    10741 agacaaaacg gcaatatgcc gatacggata cgtcatcctc cgcctgcctg ttttttatat
    10801 catactcaat tttatctgtg cgttacgacg gcatgccgtc tgaagggtgt ttatgtctgc
    10861 atctaagaaa tttccgattc ctttgagcta tttcagcatc gcgctgggct tgtttgcctt
    10921 ggggctgtcg tggcgttacg gcgcgtctgt cgggctgctc cccgccttgg ccgccgaatc
    10981 gctgcttgcg gtggcttcgg ttgtctggct cttgctggtg gcggcatacc tgatcaaaat
    11041 gtttgcgtac cgaaacgatt ttttgtctga tttgcgcgac ttggtgcaat gctgcttcat
    11101 cagcgcgatt ccgattaccg ctatgctgga gggactcgcg ctgaagccct atcaggcagg
    11161 cgcggcggca gtcctgattt atgtcggcgt tgccggacag ttggcgtttt cgatgtatcg
    11221 ggcggccggt ctgtggcgcg gcctgcattc cttggaggcg acgacgccga ttatttatct
    11281 gcctacggtt gcgacaaact ttgtcagcgc gtcatctctg gccgcgttgg ggcatcatga
    11341 ttatgcagct ttgtttttcg gcgcgggtat gttttcctgg ctgagcttgg aagcctccat
    11401 cttgggcagg ctgcgcacgg cggcaccggt cggcacggcg gcgcgcggcg tggtcggcat
    11461 ccagcttgcg cccgcctttg tcggctgcgg cgcgtatttt gccgtcggcg gtaaagtcga
    11521 cggttttgcg ttggcattaa tcggctacgg ctgcctgcag cttttgttct tgctgcgcct
    11581 gacccgctgg ttttgggaag gcggttttac gatgagcttt tggggatttt cattcggttt
    11641 cgcggcaatg gcaggatgcg gtctgcatct ggcggcttct ggcatattgt cgggcttggg
    11701 gctgacgctt gccaccgccg gatcggcagg cgtggcgctg ctgcttgtcg gtacgctgca
    11761 ccggatagcg acggggcgtt tcttggtacg cggctgatgc gttttgccgc cttgtcaaaa
    11821 atgccgtctg aacgcccaag ccttcagacg gcatttttta tttcaaaccc ttacaggtag
    11881 aatttttcga ggactttcag gttgtcatcc aatttgtaca ccagcggctg accggtcggg
    11941 atttccaagc ccatgatgtc ttcgtcggaa ataccctcga tgtgttttgc cagcgcgcgc
    12001 agggagttgc cgtgcgccgc taccaagacg cgtttgccgc tcaaaatcgc gggggcgatt
    12061 tggtcttccc aaaacggcaa tacgcgatcc agcgttactt tcaggttttc gccgtcgggg
    12121 ataacatcgg caggcagatg ggcatagcgg cggtctttgt gtgcggaaaa cgcgtcgtct
    12181 ttgtccaaaa gcggcggcag agtgtcgtag ctgcgccgcc agatgcggac ttgctcgtcg
    12241 ccgtattgtt cggcggtttg ttttttgtcc aaaccttgca gttggccgta gtggcgttcg
    12301 ttcagccgcc acgttttgat ttgcggtacg aacagttggt cggattcttc caaaacgatg
    12361 ttgcaggtct taatcgcgcg ggtcaggacg gatgtgaagg cgatgtcgaa ctcatagccg
    12421 ttttctttca gttttttacc ggcggcggca gcctcggcaa gcccctgctc gctcagcttc
    12481 acgtcgcgcc agcctgtaaa caggtttttc gcgttccatt cgctttgtcc gtggcggata
    12541 aataccagtt ccatatcgtc tccaatgtgt gaaagtagga aagccttatt tataacatat
    12601 tttcacattt cccgtatttg attcagattt agacacggtg cccactatgg tttgccgttt
    12661 tgatttacaa taatgtcctt tgctttacat tccgcataca caatgtttca acacacagga
    12721 cgacacataa agcaccgccc tatgtgttgc cctgatttgg aaggggttgc cccctcccaa
    12781 ataaagtctg attctaccgc cccgaaggac agatgtccaa gtggcggggg ttcaaccgaa
    12841 aaggaaatac gataaatatg caaccgcacg ctccacatac cgattccaat acgctgatgc
    12901 tcggccgata cgccgaacgc gcctatctcg aatacgccat gagcgtggtc aaaggccgcg
    12961 cgctgcctga agtttcagac ggccaaaagc ccgttcagcg gcgcattttg tttgcgatgc
    13021 gcgatatggg tttgacggcg ggagcgaagc cggtgaaatc ggcgcgcgtg gtcggcgaga
    13081 ttttgggtaa ataccacccg cacggcgaca gttccgccta tgaggcgatg gtgcggatgg
    13141 cgcaggattt taccttgcgc tatcccttaa tcgacggcat cggcaacttc ggttcgcgtg
    13201 acggcgacgg ggcggcggcg atgcgttaca ccgaagcgcg gctgacaccg attgcggaat
    13261 tgctgttgtc cgaaatcaat caggggacgg tggatttcgt gccgaactac gacggcgcgt
    13321 ttgacgaacc gctgcacctg cccgcccgcc tgcctatggt cttgctcaac ggtgcgtcag
    13381 gcattgcggt gggtatggcg accgaaatcc catcacacaa tttgaatgaa gtcacacagg
    13441 cggcgattgc actgttgaag aagccgacgc tggaaaccgc cgacctgatg caatacatcc
    13501 ctgctcccga ttttgccgga ggcggtcaaa tcatcacgcc ggcggacgaa ttgcgccgta
    13561 tttacgaaac cggcaagggc agcgtgcgcg tgcgtgcgcg ttacgaaatc gagaagctgg
    13621 cgcgcggaca atggcgcgtc atcgtaaccg agctgccgcc gaacgccaat tccgccaaaa
    13681 tccttgctga aatcgaagaa cagaccaacc cgaaaccgaa agcaggcaaa aagcagctca
    13741 accaagacca gctcaatact aaaaagctga tgctggattt aatcgaccgc gtgcgcgacg
    13801 agtcggacgg cgaacatccc gtgcgccttg tatttgaacc aaaatccagc cgcatcgata
    13861 ccgatacctt catcaacacg ctgatggcgc aaacttcgct ggaaggcaat gtgtccatga
    13921 acttggtgat gatggggctg gacaaccgcc ccgcgcagaa aaacctgaaa acgattttgc
    13981 aggaatggtt ggatttccgc accgttaccg taacacgccg tctgaaattc cgtttgaacc
    14041 aagtggaaaa acggctgcac atcctcgaag gccgtctgaa agtctttctg cacatcgacg
    14101 aagtgattaa agtcatccgc gaatcagatg acccgaaagc cgatttgatg gcggcgttcg
    14161 ggctgaccga aatccaagcc gaagacattt tggaaatccg cctgcgccag ttggcacgtt
    14221 tggaaggttt caaactcgaa aaagaattga acgaattgcg cgaagaacaa ggccgtctga
    14281 acatcctttt gggcgatgaa aacgaaaagc gcaagctgat tatcaaagag atgcaggcgg
    14341 atatgaaaca atacggcgat gcacgccgca cgctggtgga agaggccgga cgcgccgtgc
    14401 tgacacaaac caccgccgac gaacccatca cactgattct gtcggaaaaa ggctggatac
    14461 gcagccgtgc cggacacaat ctcgatttga gccaaaccgc gttcaaagaa ggcgaccgcc
    14521 tcaaacaaac ccttgaaggc agaacggttt tacccgtcgt catcctcgat tcattgggca
    14581 gaacctatac actcgatgcc gccgaaattc ccggcggacg cggcgacggc gtgccggttt
    14641 catccttgat cgagttgcaa aacagcgcga aacccgttgc gatgttgaca ggattgccgg
    14701 aacaacatta tttattatca agcagcggcg gctacggctt catcgccaag ttggctgata
    14761 tggtcggacg cgtaaaagcg ggcaaagtgg tgatgaccac agacagtggc gaaaccgtcc
    14821 tgccgccgat tgccgtctat gcctcctcgt tcatcaaccc cgactgcaaa atcattgccg
    14881 ccaccagtca aaaccgcgcc ctcgccttcc ccatcggcga attgaaaatt atggcgaaag
    14941 gcaaagggct gcaaatcatc ggattaaacg ccggcgaatc gctgacgcat accgccgttt
    15001 cttccgagcc ggaaatcctg attgaaagcg aaggcaggcg cggcgcggcg cacaaagacc
    15061 gcatccccgt ctccctgctt gaggcaaaac gcggcaaaaa aggcaaacta ttacccatat
    15121 cgggcagcct gaaacagctt tcttccccca aataaacccg attccacaca taattatggt
    15181 gatttccaac ccccgcgaac ttgaaaaact caaagaccgg attcccaatc tgatcaacat
    15241 catccgcgtc gccatcgttt ttccgctgat gattatgcac atcctcgggc tggaaaccgg
    15301 cagccgtgcg aacctgcacg cttcgtggac ggcgtgggcg ttttatgttt ggctcgccat
    15361 tgcctgctgg ctgattttct tttccatcat ccatccgcat tggcaatggc agtcgctgaa
    15421 aatgccgcgt ttcagcgcgg tggcggacat cacgatgatc ggcgtgctga cctacctgtt
    15481 tggcggcatc gattccggct tcggcatcct gatcctgccc ttcgtcgtct gctcctgcct
    15541 gctcagctac gggcgttacc ccctgctcta ttccagctac gccgccatcc tgctgatatt
    15601 caacgccatt gccgacggcg atatcggcaa atacccgctc atatcggatg cccgaaccgc
    15661 ctcggtaacc ttcatccttg tcgccgcctc ctatctttcc gccatcttca cctcactgtc
    15721 ggtcagatac atcgacagcg ccggccggct ggcacgcgac aaccacctcg cctaccggcg
    15781 catcaaaggc ttgagccaaa ccgtactcaa ccgcgttcag gaagcggtcg tcgtcatcaa
    15841 cgtcgagcat cagaccatac tgttcaataa aaaggcaaaa gacctgctac ccatgcttga
    15901 aatcggacag catactgccc tgttcgaccc tattaccgtt ttatgggaca aggcctcttc
    15961 gcgtactttc gaacgcaata tcgacacgcc cggcctgaac gccggcatcc gcgccgttcc
    16021 ggtcaacaaa gggccggaca agctgctcat cctctacatc cgcccgcaaa gcgaaattca
    16081 ggcagaagcc ctgtccgtca aacttgccgc gctcggacaa ctgaccgcca acctcgccca
    16141 cgaaatccgc aacccgatgt ccgccatccg ccacgccaac gacctgctgc gcgaaaatat
    16201 ggaagcgggg gcggcagatc cgttcaacgc caaattgtgc aaaatcatcg acggcaacgt
    16261 ctgccgtatc gacaaaatgc tcgaagatat ttcctcgcca acaagcgcaa caaaaccgaa
    16321 cgcgaaacca tcggcctgat accgttttgg gaagaattca aacaagagtt cctgctcggc
    16381 catcccgatg ccgccggctg catccgccta gatatgcagg gcaatcacct gactgcctat
    16441 ttcgatcctg cccacctgcg gcaaattatg tggaacctcg ccaacaacgc gtggcggcac
    16501 agcagcaaac gtaacggctc gattgccgtc gtcgcccgtc ctgcacaaaa aaacaccatc
    16561 agcatcctgt ttgccgacga cggcggcggc gttccgcccg aagtgcagga acacttgttc
    16621 gaaccctttt acaccacagc aaaaaacgga accggcttgg gactgtatgt cgcccgcgaa
    16681 ctggcacacg ccaatttcgg cgatttgacc tacctgccgg aagccaaatg tttcgaactc
    16741 acattaccgg aaaaaaccaa tgactgaact gcaacatccc gtcctcgtcg tcgatgacga
    16801 aaccgacatt ctcgacctga tggaaatgac cctgatgaaa atgggcttgc gcgtccatac
    16861 cgcgtcaggc gttgccgaag ccaaaaacaa gctcgacagc caacgctatt cgctcgtcct
    16921 gaccgatatg cgtatgccgg acggctcggg gctagaagtc gtccaacaca tcaacagccg
    16981 cctgctcgat acgccggttg ccgtcatcac cgccttcggc aatgccgatc aggcacagga
    17041 agccctgcgt tgcggcgcgt tcgaccccga taccatgcag atacaggact atctcgacca
    17101 aatcgaacgc gacatcatcg aacaaaccct caaacaaacc gaaggcaacc gcacgcaggc
    17161 cgacaaacgc ttgggcatca gcttccgttc catgcgctac cgtatggaac gcctcaacat
    17221 cggctgacga caaaacggca tccgcaccat ctccgcccac ccgaaaaaat gccgtctgaa
    17281 acggcacggg aaagcgggtt cgccccacgc ccgaacggac acaaaacacc atgaccgaca
    17341 tccttattga caacaccgcc accgaaaccg tccgcaccct gatacgggca ttcccccttg
    17401 tgcccgtttc ccaaccgccc gaacaaggca gctacctcct taccgaacac gataccgtca
    17461 gcctcaggct tgtcggggaa aaaagcagcg tcatcgtcga ctttgcctcg ggagccgcac
    17521 aataccggcg cacaaaaggc ggaggagaac tcatcgccaa agccgtcaac cataccgcca
    17581 aacccaccgt atgggatgca accgcaggat tggggcgcga cagcttcgtc ctcgcctcgc
    17641 tcggactgac cgttaccgcc ttcgagcagc atcccgccgt cgcctgcctg ctttcagacg
    17701 gcatccgccg cgccctcctc aatcccgaaa cgcaagacac cgccgcgcgc atcaacctcc
    17761 atttcggcaa cgccgccgaa cagatgcccg cccttgttca aacacaaggc aaacccgaca
    17821 tcgtctatct cgaccccatg tatcccgaac gccgcaaaag tgccgccgtc aaaaaagaaa
    17881 tggcctactt ccaccggctc gtcggcgagg cgcaagatga ggccgtcctc ctccataccg
    17941 cacgccaaac ggcaaaaaaa cgcgtcgtcg tcaaacgccc ccgcctcggc gaacaccttg
    18001 ccggacaagc ccctgcctac caatacacag gcaaaagcac ccgcttcgac gtttacctgc
    18061 cctacgaagc ggacaaggga taacgcccat aaaacaagac accgaaaaat ttgccgttct
    18121 tatgcaaacg agaaaccggt ttttgcgttt cgactgtttt ggataaatca tcacacctta
    18181 aagtttgtca ttcccacgga agtgggaatc tagaaatgaa aggcaacagg aatttatcgt
    18241 aaatgactga aaccgaacgg actagattcc cgcctgcgcg ggaatgacga tgtaaaatta
    18301 tccgggattc aaaaagacag actttcgcgt ccgtgggaat gactgcggaa agatgatttt
    18361 tattttgtca taaaaatccg caccttaatc agttggcggt taaatcaaac ttttagggtg
    18421 cagattactt tttatgattt cagacggcat tttgacaggc cgcaaaccta tttcggcaat
    18481 accaaaaact taatcagcag ttctttgaat acaaaaccga acacgcccaa gcccaaaacc
    18541 aaaaacaaaa tggcgatgcc gaatttgcct gctttggact ccttgcccaa attccaaacg
    18601 ataaaaccca aaaaaataat caagccggtc aggcagattt tcaacgccca atcggcaaaa
    18661 accgcttcat ccatattttt ttcctattgt tgatgtgtat gccatataag ataagggttt
    18721 cagacggcat ctgctgtcca atgccgtctg aaacacgcaa tcagcgtgcg agtgcctgtt
    18781 tcaaatcgtc aatcaaatcg ccaacatatt ccaaaccgac cgacaggcgc accaatccgg
    18841 ggcggatgtt ggcggcgagt ttttcttcgg gctgcatcct gccgtgcgtg gttgtccacg
    18901 gatgggtgat ggtcgagcgc acgtcgccga ggttggcggt acgggaaaag agttccacgc
    18961 cgtccacgac tttccacgcg gctgcttggt cggcgacttc aaagccgatg acgatgccgc
    19021 cgccgttttg ctgtttgcgg ataagcgccg cctgcggatg gtcgggcaat ccggtgtagt
    19081 acacggcttg aacctgcggc tgcgcttgca gccattgtgc gattttcagg gcgttgtcga
    19141 actgtttttc catacgcagc gacagggttt ccacgccgct caacaactgc cacgcattaa
    19201 acggcgacat cgccagcccg caagagttgc agtaaacggc ggcctgcgcc atcaattctt
    19261 ccgaacccgc caacacgccg cccatcacgc gtccgtgtcc gtctatggct ttggtcgcgg
    19321 aggaaacgga aatatccgcg ccgtgtttca aaggctgcga gccgacgggc gacagcaggc
    19381 tgttgtccac caccaaaatc gcgccgatgc cgtgcgccaa ttccgccaag gcttccaagt
    19441 cggccacttc gcccaaggga ttggacggcg tttccaaaaa cagcagtttg gtgttggctt
    19501 tgacggcggc tttccattcg tttatatcag tcggcgacac gtggctcact tcgatgccga
    19561 atttggtaac gatgttattg ataaagccga cggtcgtgcc gaacaggctg cggctggaaa
    19621 ccacgtggtc gcccgcctgc aaaaaggtga aaaacgccgc ctgaatcgca gacatacccg
    19681 tcgaagtggc gaccgcgcgt tccgcacctt ccaaagcggc gatgcgtttt tcaaaggcgg
    19741 ctgtggtcgg gttggcggta cgggtataag tgaacccttt gatttttttt gaaaacaaat
    19801 cggcagcgtg ttgggcgttg tcccacatga agctgctggt cagaaacaat gcctgattgt
    19861 gttcgcggta ttcggtttgt tctttgccgc cgcgtatggc gagcgtttgc ggatggagtt
    19921 ttttgctcat cggtgattcc tcggttttgt ccgttcggca acggagcgtg cgcccgttgt
    19981 ttaatttgtt aatattttgc gcctgttcta tgatgctttc aagtcggatg agaatgcaaa
    20041 tgccgtctga aacggctttc agacggcatg gcaatcagcg tttgtatttt aactcgtact
    20101 tgatgtcgtt gaggattttg cggacatcgt gttccaacac gtcttcgact accgcccccg
    20161 cctgctcgtg cagcatctgc tggagctgat aggtgaaaac cgccatctgc ttttgcaccg
    20221 ccgttcggat gatgccgttg acggtatcgg tcagatgcgg gcgcaggcgt ttgatcagcc
    20281 gttcggtcag ctcctgttcg gacaggcaga acacttcgcg ccggttgacg gctttcgggt
    20341 tcaggatatt gatttggacg ggcatcaacg cctcttccgc accgccttcg ccgttttccg
    20401 caaccccgtc tgccgccgta cccgattctg ccgcatcggc gttttccctg ccttcaatct
    20461 gtccggtttc aaattcggca ctgtcttttt gggcatcgaa ccggattctc cgccgcgatt
    20521 cgatgtgttt ttccgaaacc gacatttgca gggaagcctg cgcgttgagc cagttttcct
    20581 gaaggacaat catcgggtcg gtttcgactt cctcgccgca atcggcaacg gcggcattgt
    20641 gttcctcctg ccattttttc agatacgcct tcaacacacg ggctcggctc tcatcgtcca
    20701 gtttcggcac aggcgcgtcc gttccggttt cagaggggcg ggacagcggc gcgtaagtcg
    20761 gcactgcctt catacggcgc gtctgacgca ggttttccaa acgtttttcc caattcggct
    20821 ctttattcgc atccattttc ggcttccggt tcttaatctt tgcaagcaga caaacccgcg
    20881 cccaaagcgc ggtttgatat aatggcgcat tttaacagat tcgcgaggat acatcatggg
    20941 cagcatcgaa cagcgtttgg aatatctgga agaggcgaac gacgtgctgc gtatgcagaa
    21001 ccacgtcctg tccaccgcat tcaaagcctt aatccgcgcc cttcccgccg aaaccgccga
    21061 aatcgcggtc gagtcgattc agcttgcttt tgaggacgcc ttggcagaat tgagctatga
    21121 ggacagcccc cataccgatt tgttccacga cgttacttat gcgtttttcc gtgaaaaaga
    21181 acgttaattt tatgttaaac tgatttttta ggctttttga ttaccgaaag gaattttgat
    21241 gaatatgaaa aaatggattg ccgccgccct tgcctgttcc gcgcttgcgc tgtctgcctg
    21301 cggcggtcag ggtaaagatg ccgccgcgcc cgccgcaaat cccgacaaag tgtaccgcgt
    21361 ggcttccaac gccgagtttg ccccctttga atctttagac tcgaaaggca atgtcgaagg
    21421 tttcgatgtg gatttgatga acgcgatggc gaaggcgggc aattttaaaa tcgaattcaa
    21481 acaccagccg tgggacagcc ttttccccgc cttgaacaac ggcgatgcgg acgttgtgat
    21541 gtcgggcgta accattaccg acgaccgcaa acagtctatg gacttcagcg acccgtattt
    21601 tgaaatcacc caagtcgtcc tcgttccgaa aggcaaaaaa atatcttctt ccgacgattt
    21661 gaaaaacatg aacaaagtcg gcgtggtaac cggctacacg ggcgatttct ccgtatccaa
    21721 actcttgggc aacgacaatc cgaaaatcgc gcgctttgaa aacgttcccc tgattatcaa
    21781 agaactggaa aacggcggct tggattccgt ggtcagcgac agcgcggtca tcgccaatta
    21841 tgtgaaaaac aatccgacca aagggatgga cttcgttacc ctgcccgact tcaccaccga
    21901 acactacggc atcgcggtac gcaaaggcga cgaagcaacc gtcaaaatgc tgaacgatgc
    21961 gttggaaaaa gtacgcgaaa gcggcgaata cgacaagatt tacgccaaat attttgcaaa
    22021 agaagacgaa caggccgcaa aataagcccg cccgtccgaa cacaatgccg tctgaagccc
    22081 tttcagacgg cattgttcat caatcggcct acaatgaact gcctgctgat ttctccctac
    22141 cgcaaagcaa caggcaaaga ttacaaatat caaaatccga gtaaaacagt attttattaa
    22201 aacaaattga taatcaagag attagaatta tgtattgtct ttaccgtaca aacgctggca
    22261 ctatttcaac ctgataaaaa acagccttca aaaaggttgc ttaaaacagc agcagacact
    22321 taccgccaca accttgaaaa ggaacacaat catgaccgtc atcaaacagg aagactttat
    22381 ccaaagcatt tgcgatgcct tccaattcat cagctactac catcccaaag actacatcga
    22441 cgcgctctat aaagcgtggc agaaagaaga aaaccccgcc gccaaagacg cgatgacgca
    22501 gattttggtc aacagccgca tgtgtgccga aaacaaccgc cccatctgcc aagataccgg
    22561 tatcgcgacc gtcttcctca aagtcggtat ggatgtgcag tgggatgcgg acatgagcgt
    22621 cgaagaaatg gttaacgaag gcgtgcgccg cgcctacact tgggaaggca atacgctgcg
    22681 cgcttccgtt ctcgccgacc ccgccggcaa acgccaaaat accaaagaca acacgcccgc
    22741 cgtcatccat atgagcatcg tgccgggcga caaagtcgaa gtaacctgcg cggcaaaagg
    22801 cggcggttct gaaaacaaat ccaaactcgc catgctcaat ccttccgaca acatcgtcga
    22861 ttgggtattg aaaaccatcc cgacgatggg cgcgggctgg tgtcctcccg gcatcttggg
    22921 catcggcatc ggcggcacgc ctgaaaaagc cgtgttgatg gcaaaagagt ccctgatgag
    22981 ccacatcgac atccaagaat tgcaggaaaa agccgcgtcc ggcgcggaat tgtccaccac
    23041 cgaagccctg cgcctcgaac tctttgaaaa agtcaacgcg ctgggcatcg gcgcacaagg
    23101 tttgggcggt ctgaccaccg tgttggacgt gaaaatcctc gattacccga cccacgccgc
    23161 ctccaaaccg attgccatga ttccgaactg cgccgccacc cgccacgtcg aatttgaatt
    23221 ggacggctca ggccctgtcg aactcacgcc gccgcgcgtc gaagactggc ccgatttgac
    23281 ttacagcccc gacaacggca aacgcgtcga tgtcgacaag ctgaccaaag aagaagtggc
    23341 aagctggaaa accggcgacg tattgctgtt gaacggcaaa atcctcaccg gccgcgatgc
    23401 cgcacacaaa cgcctcgtcg atatgctcaa caaaggcgaa gaattgcccg tcgatttcac
    23461 caaccgcctg atttactacg tcggccccgt cgatccggtc ggcgatgaag tcgtcggtcc
    23521 ggcaggtccg accacagcca cccgcatgga caaattcacc cgccaaatgc tcgaacaaac
    23581 cggcctcttg ggcatgatcg gcaaatccga acgcggcgcg gcggcgtgcg aagccatcgc
    23641 cgacaacaaa gccgtgtacc tgatggcggt cggcggcgcg gcatacctcg tggcaaaagc
    23701 catcaaatct tccaaagtct tggcgttccc cgaattgggt atggaagcca tttacgaatt
    23761 tgaagtcaaa gatatgcccg taaccgtcgc cgtagacagc aaaggcgaat ccatccacgc
    23821 caccgccccg ccccaatggc aggcgaaaat cggcatcatc cccgtcaaat cttgaggcgt
    23881 catgccgtct gaacacaaaa tctgctttca gacggcattt ccgcccccgg ttgcggtaca
    23941 atccaccatt tcatcactcg gcgacccaca ccgtgaaaat cctcatttta ggcaacggac
    24001 aggtaggttc taccgtcgca caaaaccttg ccgccatacc caacaacgac gtaaccgtta
    24061 tcgacatcga cgaaaaagca ttgcaggaaa caggcagccg cctcgatgtc caaaccgttt
    24121 tcggcaacgg cgcatccccc ttcacattag aacgcgccgg cgcggaagat gccgacttgc
    24181 tgctcgcgct ctcccgcagc gacgaaacca acatcgtcgc ctgcaaagtt gccgccgacc
    24241 tgttcaacat ccccggccgc atcgcgcgcg tccgttccag cgaatacctc gaatacctca
    24301 gccccaagct cgaaaacaac gaaaacggca gcctttccat attcggcata accgaaacca
    24361 tcagccccga acagctcgtt accgaacagc ttgccggcct gatagactgc ccgggcgcat
    24421 tgcaggtttt acgttttgca gacgaccgcg tgcggatggt catcatacag gcgcggcgcg
    24481 gcgggttgct tgtcggacgc agcattgccg acatcgccca agatttgccc gacggggccg
    24541 actgccaaat ctgcgccgtt taccgcaaca accgcctcat cgtccccgcg ccgcaaaccg
    24601 tcatcatcga aggcgacgaa atcctatttg ccgccgccgc cgaaaacatc ggcgcggtca
    24661 tacccgaatt gcgccccaaa gaaaccagca cccgccgcat catgattgcc ggcggcggca
    24721 acatcggcta ccgtctcgcc aagcagctcg aacacgcata caacgtcaaa atcatcgaat
    24781 gccggccgcg ccgtgccgaa tggatagccg aaaacctcga caacaccctc gtcctgcaag
    24841 gttcggcaac cgacgaaacc ctgctcgaca acgaatacat cgacgaaatc gacgtattct
    24901 gcgccctgac caacgacgac gaaagcaaca ttatgtccgc ccttttggcg aaaaacctcg
    24961 gcgcgaagcg cgttatcggc atcgtcaacc gctcaagcta cgtcgatttg ctcgaaggca
    25021 acaaaatcga catcgtcgtc tccccccacc tcatcaccat cggctcgata ctcgcccaca
    25081 tccggcgcgg cgacatcgtt gccgtccacc ccatccggcg cggcacggcg gaagccatcg
    25141 aagtcgtcgc acacggcgac aaaaaaactt ccgccatcat cggcaggcgc atcagcggca
    25201 tcaaatggcc cgaaggctgc cacattgccg ccgtcgtccg cgccgaaacc ggcgaaacca
    25261 ttatgggaca ccataccgaa accgtcatcc aagacggcga ccacatcatc tttttcgtct
    25321 cgcgccggcg catcctgaac gaactggaaa aactcatcca ggtcaaaatg ggctttttcg
    25381 gataaaccgc cccattccgg acacattgcc gccaagcggt atggaagcgg aaataatggt
    25441 aggtgggctt cagacggcat ccgccctccc cgtccttccc gcgtaagcgg gaatccagac
    25501 cttgggatag cggcaatatt caaaggttat ctgaaaattt agaggttcta gattcccgtt
    25561 tccacgggaa ggacgaagag ttgcgggaat ctagaccatt ggaaagcggc aatattcaaa
    25621 ggttagctga agctttagag gttctagatt cccgtttcca cgggaatgac gaaaggtggc
    25681 gggaatccaa accattgggc aacagcaata ttcaaagatt atctgaaagt ttgaggttct
    25741 agattcccgc tttcgcggga atgacgaaaa gtggcgggaa tgacgaagtt tcagacggca
    25801 tcgcccgcct gttttgatat ggcggcaccc cccccgacaa aaaaaacaat ccggaacgca
    25861 tctgaccgtt ccggcttgtt ttcaggcgaa tccgccgcat cagaacatac tgcgcacgcc
    25921 catattgacc tgccaagtct ggcgcatcgt gtgcatcgaa gacctttgcg cctcaaaata
    25981 aagctgcctt ccgttgtcgg cattaccacg caaaaaaaat gaattgcttg atattccaat
    26041 gttttttata tgtttttata ttgtgatgcg atcagacaaa cgcccccctg acatttgttt
    26101 agacggcatc gtattgctaa atttctataa gtatgtataa tgtccgtttc cacgcgccca
    26161 tcgtctagag gcctaggaca ctgccctttc acggcggcaa ccggggttcg aatccccgtg
    26221 ggcgtgccaa ttcaaaaacc tgcttgtttc aagcaggttt ttttattatg aatcgtcatt
    26281 cccgcac
//
LOCUS       DAXHNP010000009        26171 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.009, whole genome shotgun sequence.
ACCESSION   DAXHNP010000009 DAXHNP010000000
VERSION     DAXHNP010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26171
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.009"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            716..2164
                     /gene="gnd"
                     /locus_tag="ACFM5C_000267"
     CDS             716..2164
                     /gene="gnd"
                     /locus_tag="ACFM5C_000267"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019269816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HFC6068048.1"
                     /translation="MKGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTIGKVDEFLNG
                     AAKGTDIIGAYSLQDLVDKLEKPRKIMMMVRAGSVVDDFIEQLLPLLEEGDIVIDGGN
                     ANYPDTTRRTHYLAEKGILFVGAGVSGGEEGARRGPSIMPGGDKRAWEAVKPIFQAIA
                     AKTPQGEPCCDWVGKDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDKMHRV
                     FAEWNKTELDSYLIEITAAILGYKDEGGEPLVEKILDTAGQKGTGKWTGINALDLGIP
                     LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
                     QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
                     FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
                     HTYERIDKPRGEFFHTNWTGKGGDTASTTYDI"
     gene            2227..3498
                     /gene="waaA"
                     /locus_tag="ACFM5C_000268"
     CDS             2227..3498
                     /gene="waaA"
                     /locus_tag="ACFM5C_000268"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HFC6068049.1"
                     /translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRDERFGKPYP
                     NPVTGAVWIHAVSVGETRAAQPLIRELRQRFPDAPLLMTQMTPTGRETAQVLFPDAQC
                     RYLPYDKKTWVRQFLREHRPMFGILMETEIWPNLMTECRKSGVPLFLANARLSEKSLN
                     GYLKVRRLIRPAAASLTGCLVQTEADAARLAKLGAASVQVCGNTKYDLMPSEQMKTLA
                     GQFEKRIGGRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTVFE
                     TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
                     EPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKALSSEGGGMQMQ
                     ARVDGFIAQHRGAGARIAEAVREAVCGHRGR"
     gene            3539..3988
                     /locus_tag="ACFM5C_000269"
     CDS             3539..3988
                     /locus_tag="ACFM5C_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family copper resistance protein"
                     /protein_id="HFC6068050.1"
                     /translation="MSIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARRE
                     VEKAMSYRAVRVMPFVVGLLFASGIVMAANRYLSILGEPFATSFGTMLTLKILLAFSV
                     LAHFAIAVVKMARSTLTVGWSKYIHTVVFTHMLLIVFLAKAMFYISW"
     gene            4021..4995
                     /locus_tag="ACFM5C_000270"
     CDS             4021..4995
                     /locus_tag="ACFM5C_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFC6068051.1"
                     /translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNSSHKVGVKEA
                     LAWSGLWVAVSCLFAGWLYFELAGNLGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
                     LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVQQFEWILYLFGAFLLYTG
                     IHMMKPEGDEKEDLANSRLLNAVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
                     ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
                     FVLSFIGVKMLVMHWVHIPISVSLSVVFGALGASILTSLIYTKKQPDK"
     gene            5064..5139
                     /locus_tag="ACFM5C_000271"
     tRNA            5064..5139
                     /locus_tag="ACFM5C_000271"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5097..5099,aa:Lys,seq:ttt)
     gene            5358..6611
                     /gene="murA"
                     /locus_tag="ACFM5C_000272"
     CDS             5358..6611
                     /gene="murA"
                     /locus_tag="ACFM5C_000272"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFC6068052.1"
                     /translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
                     PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
                     LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDV
                     VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMVVEGS
                     DELHGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
                     DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
                     PELNRMGANITTEGNTAFVQGVEQLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
                     HLDRGYENIEKKLGSVGAKIERVSG"
     gene            6692..7870
                     /locus_tag="ACFM5C_000273"
     CDS             6692..7870
                     /locus_tag="ACFM5C_000273"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFC6068053.1"
                     /translation="MAFLKLTEQNVRGKTVLIRADMNVPFKDGKISDDTRIRASIASV
                     KYCLDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGSLLGKDVKVLNDWRENKPAL
                     NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
                     VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
                     ANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFTADAEAV
                     VKDIADVAEDDMILDIGPKSAAELADLLKAAGTVVWNGPVGVFEFDQFAGGTKALAEA
                     IAQSKAFSIAGGGDTLAAIAKFGVTDQIGYISTGGGAFLEFLEGKELPAVAALEKRGA
                     "
     gene            complement(7937..8185)
                     /locus_tag="ACFM5C_000274"
     CDS             complement(7937..8185)
                     /locus_tag="ACFM5C_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6068054.1"
                     /translation="MLTSEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
                     ARHRLIKDGLKAQLESNELHALSISVAATPAEWAAKAQ"
     gene            complement(8276..9193)
                     /gene="ftsX"
                     /locus_tag="ACFM5C_000275"
     CDS             complement(8276..9193)
                     /gene="ftsX"
                     /locus_tag="ACFM5C_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HFC6068055.1"
                     /translation="MSIIHYLSLHVESARTALKQLLRQPFGTLLTLIMLAVAMTLPLF
                     MYLGIQSGQSVLGKLNESPQITIYMETAAAQSDSDTVRSLLARDKRLDNIRFIGKEDG
                     LEELQSNLDQNLISMLDGNPLPDVFIVTPDPATTPAQMQAIYRDITKLPMVESANMDT
                     EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
                     FIRRPFLYQAMWQSILSAAVSLGLCGWLLSAVRPLVDAIFKPYGLNIGWRFFYPGEIA
                     LVFGFVIALGVFGAWLATTQHLLGFKAKK"
     gene            complement(9190..9840)
                     /gene="ftsE"
                     /locus_tag="ACFM5C_000276"
     CDS             complement(9190..9840)
                     /gene="ftsE"
                     /locus_tag="ACFM5C_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFC6068056.1"
                     /translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTV
                     LKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
                     PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLI
                     ADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLA"
     gene            complement(9837..10028)
                     /locus_tag="ACFM5C_000277"
     CDS             complement(9837..10028)
                     /locus_tag="ACFM5C_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068057.1"
                     /translation="MPSESASDGIFPARPSVSAKLIHYLKTGGIFIIGTVLPIVQTAY
                     PCGRNRPKRYAAHSLQDLL"
     gene            complement(10036..10518)
                     /locus_tag="ACFM5C_000278"
     CDS             complement(10036..10518)
                     /locus_tag="ACFM5C_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFC6068058.1"
                     /translation="MKYLNLAAITLAATFAAHTASADELAGWKDNTPQSLQSLKAPVR
                     IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
                     RYTGANSRNFMKSYGNNVGVLPFTVVEAPKCGYKQTITGEVNEKSLTEAVKLAHSKCR
                     "
     gene            10642..10995
                     /gene="arsC"
                     /locus_tag="ACFM5C_000279"
     CDS             10642..10995
                     /gene="arsC"
                     /locus_tag="ACFM5C_000279"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271974.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA];
                     GO_process: GO:0046685 - response to arsenic-containing
                     substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HFC6068059.1"
                     /translation="MSEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
                     KDIFNKLGLASARGMMRVKDDLYKELGLDNPNLDNDALLRAIADHPALLERPIVLANG
                     KAAVGRPLENIEAVL"
     gene            10992..11636
                     /locus_tag="ACFM5C_000280"
     CDS             10992..11636
                     /locus_tag="ACFM5C_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HFC6068060.1"
                     /translation="MNKRLFCSRNGLRYYLLGGFCLSVFPFLLVFASSVWAVYRTGGQ
                     VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYM
                     TEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLA
                     RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFN"
     gene            11840..13234
                     /gene="gltX"
                     /locus_tag="ACFM5C_000281"
     CDS             11840..13234
                     /gene="gltX"
                     /locus_tag="ACFM5C_000281"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFC6068061.1"
                     /translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
                     DLARSTAESVNIILDGMKWVGLDYDNADNVVYQTRRFERYKEVIAELLAKGDAYYCYC
                     SKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPAGVQPVVRFKTPLDGVTKWTDL
                     VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
                     LKAIGANLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
                     HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITPNEKLAELVKPRLA
                     LRDIHETEKPALEDVLAQVKDRAQDLNALADECLYFYKKQVPAEADVAKHWDDEAAAR
                     MLRFAERLEGLEDWNAEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
                     ALIGKEEVLKRIRA"
     gene            13255..13650
                     /locus_tag="ACFM5C_000282"
     CDS             13255..13650
                     /locus_tag="ACFM5C_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068062.1"
                     /translation="MPSDVGMRLQTAFKRKLNMKKILYFLMFVFSTSVWAGDAEDNLL
                     SIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQTAQADIARLEAEIPAAMAQKARQ
                     AEELRQIGVRLDYAWNAVYGAGGTKASGN"
     gene            13654..14145
                     /locus_tag="ACFM5C_000283"
     CDS             13654..14145
                     /locus_tag="ACFM5C_000283"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6068063.1"
                     /translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIH
                     AYYGRCLKDDELPLAFAAVDDSGTLLGSATVKRHDMESFPQYEYWLGDVFVLPEYRGK
                     GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWAVVGRHFHNGEWVTVMRLDM
                     DKV"
     gene            complement(14268..16862)
                     /gene="mutS"
                     /locus_tag="ACFM5C_000284"
     CDS             complement(14268..16862)
                     /gene="mutS"
                     /locus_tag="ACFM5C_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HFC6068064.1"
                     /translation="MSKSAVSPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAA
                     KLLDITLTTRGQVDGEPVKMAGVPFHAAEQYLARLVKLGKSVAICEQVGEVGAGKGPV
                     ERKVVRIVTPGTLTDSALLEDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDK
                     LDDELARLQAAEILLPDSKNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRG
                     FGLDGKEHAVAIGAAGALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEIT
                     QTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQYKPL
                     QCRLKNIADIERIAARIAVGNARPRDLASLRDSLFELAQIDLSANGSSLLETLKAVFP
                     ENLSTAEQLRQAILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERE
                     RTGLSTLKVEFNRVHGFYIELSKTQAEQAPADYQRRQTLKNAERFITPELKAFEDKVL
                     TAQEQALALEKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEF
                     ADYPAIHIENGRHPVVEQQVRHFTANHTNLDHKHRLMLLTGPNMGGKSTYMRQVALIV
                     LLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSL
                     VLMDEVGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHL
                     SALEQGQDIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRP
                     QLDIFSTMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPRKALSELYRL
                     KDLCKSVS"
     gene            17304..18308
                     /gene="gap"
                     /locus_tag="ACFM5C_000285"
     CDS             17304..18308
                     /gene="gap"
                     /locus_tag="ACFM5C_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6068065.1"
                     /translation="MSIKVAINGFGRIGRLALRQIEKAHDIEVVAVNDLTPAEMLLHL
                     FKYDSTQGRFQGTAELKDDAIVVNGKEIKVFANPNPEELPWGELGVDVVLECTGFFTN
                     KTKAEAHIRAGARKVVISAPGGNDVKTVVYGVNQDILDGSETVISAASCTTNCLAPMA
                     AVLQKEFGVVEGLMTTIHAYTGDQNTLDAPHRKGDLRRARAAALNIVPNSTGAAKAIG
                     LVIPELNGKLDGSAQRVPVATGSLTELVSVLERPVTKEEINAAMKAAASESYGYNEDQ
                     IVSSDVVGIEYGSLFDATQTRVMTVGGKQLVKTVAWYDNEMSYTCQLVRTLEYFAGKI
                     "
     gene            complement(18378..18497)
                     /locus_tag="ACFM5C_000286"
                     /pseudo
     CDS             complement(18378..18497)
                     /locus_tag="ACFM5C_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(18566..19246)
                     /gene="tsaA"
                     /locus_tag="ACFM5C_000287"
     CDS             complement(18566..19246)
                     /gene="tsaA"
                     /locus_tag="ACFM5C_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HFC6068066.1"
                     /translation="MTYTIVPIATARSPYKQKFGIARQPGLVSAAEVCIELNPEFTAD
                     SVRGLEHFDYVWISFIFHGVLDEGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSL
                     LKLERIETGKPVRLYCSGADLLDGTPIVDIKPYIPFVESKPDAASGFVSGKPVELEVV
                     WQENIGAENLSANTKNLISQSIAQDPRPAYQNIPERIYVMNIADYEVRFQIEENRATV
                     IDLSPTPL"
     gene            19361..19996
                     /locus_tag="ACFM5C_000288"
     CDS             19361..19996
                     /locus_tag="ACFM5C_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HFC6068067.1"
                     /translation="MIVSIDVDAQKTFTPLCPKELPVNEGHLIVEELNAQAALADLRV
                     MTKDAHHAAAKWLVDNPVDMLKPTGLPDADLTWVAHAMVGTRGYELLDGLPCAKEYDY
                     CVWKGIDPELHPYGACFHDIEEKLSTGLIEWLRCQNTDTVIIGGLATDYCVKTTVLQL
                     LKGGRWQVVVNEAACRGIAPETIETAWQEMHSAGAIILKNADEINKYINNQ"
     gene            20033..21001
                     /gene="waaC"
                     /locus_tag="ACFM5C_000289"
     CDS             20033..21001
                     /gene="waaC"
                     /locus_tag="ACFM5C_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFC6068068.1"
                     /translation="MKILLVRLSSMGDLIHTLPAIEDLARQCPDVELHWLCEAGFADI
                     ARLHPFVKKIHVMKWRQWRKHLFRAETWREMGHLKQTLRQEVFDFVLDSQGLIKSACF
                     AKMAKSPIYGLDKNSAREGWAALAYVKTYAVPKGKNAVWRNRELFAQVFGYVMPETQV
                     FGLTVPEAGRLKNLAQPYYAALHATSRDSKLWPVENWRSLLQKLNEEQQCNIYLPWGN
                     EDEKTRAKQIADGLPFAIVCDKINLLQAAYLLKYAVGIVGVDTGLLHLANALEKPVVG
                     IYTDTDPIKTGVQVSPIAKNLGNIGQIPTADLVYQALMDCVAADKG"
     gene            21228..21977
                     /locus_tag="ACFM5C_000290"
     CDS             21228..21977
                     /locus_tag="ACFM5C_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HFC6068069.1"
                     /translation="MKALVAVKRVVDYNVKVRVKADGSDVDIGNVKMSMNPFDEIAVE
                     EAVRLKEAGKVSEIVAVSLGEKKCEETLRTALAMGADRAIHVETDAKLEPLAVAKLLK
                     AVADKENPQIFFLGKQAIDDDANQVAQMLAALLNAAQGTFASKVQIEGDEVQIVREID
                     GGEETIALKLPAVISADLRLNEPRFVKLPNIMAAKKKPLEKLAPADLATDILPRLKTV
                     KFAEPKARQAGVKVASVAELVEKLKNEAKVI"
     gene            21988..22923
                     /locus_tag="ACFM5C_000291"
     CDS             21988..22923
                     /locus_tag="ACFM5C_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HFC6068070.1"
                     /translation="MSVLIIVEHDNKQLNPTTLHAVTAAAKLGKVDLLVAGSGASAVV
                     ESAKQVAGVEKVLVADAAHYAEGLAEELAPLVVKLAADYRYVAATATTFGKNLLPRVA
                     ALLDVPQISDLTEIVDNTTFVRPIYAGNAFETVQANAEKLVLTFRATAFDAAAVQGGN
                     AEVINIETTPAQNLSRFVNRQLSHSDRPELTQAKVIVSGGRALGSAEKFNEVLTPLAD
                     VLGAAIGASRAAVDAEYAPNDAQVGQTGKVVAPQLYFAIGISGAIQHVAGMQDSKVIV
                     AINKDADAPIFNVADYGLVGDLFEIVPQLTEALKN"
     gene            22986..23597
                     /locus_tag="ACFM5C_000292"
     CDS             22986..23597
                     /locus_tag="ACFM5C_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFC6068071.1"
                     /translation="MITTYKTITSPTQAGFKDKGSRFIAFAYPIRTLADVKKYLDPLK
                     EEHHKARHWCYAYRLGVDGMQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYF
                     GGTLLGVSGLIHAYKEATAQALAIAEVIEKNIEKTVWLKCEYPFLNEAIRIAKQYQAD
                     ILEQDLQLDCRLTVSLSLANYEVCVAAWKNTRQIEVNTEKPFE"
     gene            complement(23649..23966)
                     /locus_tag="ACFM5C_000293"
     CDS             complement(23649..23966)
                     /locus_tag="ACFM5C_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HFC6068072.1"
                     /translation="MQKRIDEIQSKYREWCHLLPQLEEDIRRWKHAVALIRDMDNFYT
                     HEYQACHRAIEDGAEVDLRTEGEYSIMSEDALWNALGEFHQLAWLYLRSSVDALDKYT
                     QED"
     gene            24124..25395
                     /gene="purD"
                     /locus_tag="ACFM5C_000294"
     CDS             24124..25395
                     /gene="purD"
                     /locus_tag="ACFM5C_000294"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFC6068073.1"
                     /translation="MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQ
                     NIDLTAHQDLIEFCRKENIVFTVVGPEAPLAAGVVDDFRAAGLKIFGPTQYAAQLESS
                     KDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLD
                     EAHAAIDDMLLDNKMGNAGARVVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLD
                     GDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQ
                     SGAPYTIEFNCRFGDPETQPIMSRLNSDLADLVEAAIDGKLDSVAAEWNPQTAVGVVL
                     AAQNYPETPKKGDVISGLDAANQVGKVFHAGTTANEKGDVLTNGGRVLCVVGLGDNVA
                     QAKAKAYGALEKISFDGMQYRKDIADKAINR"
     gene            25429..26031
                     /locus_tag="ACFM5C_000295"
     CDS             25429..26031
                     /locus_tag="ACFM5C_000295"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6068074.1"
                     /translation="MTDMLQTAFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCY
                     GLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPA
                     PKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRAC
                     RTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR"
BASE COUNT         6256 a         6049 c         7369 g         6497 t
ORIGIN      
        1 gagcggtttc tgttttttcc gataaatgcc gcaatctcaa atcccgtcat tcccactttc
       61 gtgggaatga cggaatgtag gttcgtggga atgacgcggt acaggtttcc gttacgtatc
      121 cccatccgaa agtttattta tacacaagca atccaaagtt atctgactga aatattgtga
      181 gatttacccg caaatctcat tttttccacc acttatacac aaattcggat gcgcactctg
      241 ccgatatgca gaaataagac attcgtgccg acacctgacc atttccacaa gttccaaaca
      301 cactttcctc tcaaacctcc acagtattcc ggttcttaaa gacatcggca gccattcggt
      361 aaagaaaagc ggaatgccat ctgcacaaca ggcaaactgt ccacaaaaac tattcttcat
      421 gaaaaacaat ccacaggtat gcacaaaagg gaatccgcct taccgacacc cttttaaaac
      481 ggaaatccca atgattttta aaataaaaaa aagttaccca cagaaaattt ctcctatcaa
      541 tataatcatc gtttttttat ttaattttta tattttattt ataagccttc agggaaacgc
      601 acggtaaagc gtaaaggcat cttttcaaaa aattaaaaag ttaaggattg ttaaacaagt
      661 gtaaatcagg tagagttgcg gtcgataaat taaatctata acggagcttc ctgcaatgaa
      721 aggcgatatt ggcgtaatcg gtttggcggt tatggggcaa aacctgattt tgaatatgaa
      781 cgattgcgga tttaaggttg tcgcctacaa ccgaacaatc ggtaaggtgg acgaattttt
      841 aaacggcgcg gctaagggaa cggatattat cggcgcgtat tccctgcaag acttggtcga
      901 taagctggaa aaaccgagaa aaatcatgat gatggttcgc gcaggttcgg tggttgacga
      961 ctttatcgaa caactgcttc cgctgttgga agaaggcgat atcgttatcg acggcggcaa
     1021 tgccaattat cccgacacga cacggcggac acattacctt gccgaaaaag ggattttgtt
     1081 cgtcggcgcg ggcgtatccg gcggcgaaga aggcgcgcgg cgcgggccat ccattatgcc
     1141 gggcggggat aagcgcgctt gggaagcggt caaaccgatt tttcaggcga ttgccgccaa
     1201 aacgccgcag ggcgaaccgt gttgcgactg ggtcggcaag gacggcgcgg gacattttgt
     1261 caaaatggtg cataacggca tcgaatacgg cgatatgcag ttgatttgcg aggcttacca
     1321 gttcatgaaa gacggtttgg gattgtccta cgataaaatg caccgcgtgt ttgccgagtg
     1381 gaacaaaacc gagctggatt cttatctgat tgaaatcaca gcggcaattt tgggctataa
     1441 agatgaaggc ggcgaaccgc tggtcgagaa aatcctcgat acggcagggc aaaaaggcac
     1501 gggcaaatgg acgggtatca atgctttgga tttgggtatt ccgctgacgc tgatttccga
     1561 agcggtattc gcccgctgcg tttcgtcgtt caaagaacag cgcgtgcaga ccggcaagct
     1621 gttcgcccga accgttacgc ccgtcgaagg cggcaaacaa gaatgggttg aggcgttgag
     1681 acaggccctg cttgcatcca aaatcatttc ctacgcacaa ggctttatgc tgatccgcga
     1741 agcgggcgaa agctacggct gggatttgga ctacggcaac actgcgctgc tgtggcgcga
     1801 ggggtgcatc attcgcagcg cattcttaag caatatccgc gacgcgtatg aaaacaatcc
     1861 cgatttggtg ttcttgggtg cggatccgta tttcaaaaat attttggaaa actgcctgcc
     1921 ggcgtggcgc aaggtggttg ccaaggcggt cgaatgcggc atccctatgc cctgcatggc
     1981 ttcggcgatt acgttcttgg acggctacac gaccgaacgt ctgcctgcca acctgcttca
     2041 ggcgcagcgc gactacttcg gcgcgcacac gtacgagcgc atcgacaaac cgcgcggcga
     2101 gtttttccat accaactgga cgggcaaggg cggagatacc gcttcgacaa cctacgatat
     2161 ttgattccgt tgccgaaatg ccgtccgaac cgttcggacg gcatttgttt tgcaggaaat
     2221 agaaagatgt tccaatggct ttatgatgta ttgtggctgc ttgcgccgat atggatacgg
     2281 cgttatttgg acaaacgctc cggaagtgcc ccggcatatc gggcgcatcg ggacgagcgt
     2341 ttcggcaagc cgtatccgaa tcccgttacc ggcgcggttt ggatacacgc cgtttcggtc
     2401 ggagaaacgc gtgccgccca gcccttgata cgcgagttgc ggcagcgttt tcccgatgcg
     2461 ccgctgctga tgacgcagat gaccccgacg ggacgggaaa ccgcgcaagt tctgtttcct
     2521 gatgcacaat gccgttatct tccgtatgac aaaaaaacgt gggtacggca gtttttgcgc
     2581 gaacaccgcc cgatgttcgg cattttgatg gaaaccgaaa tctggcccaa cctgatgacg
     2641 gagtgccgga aatcgggcgt tccgctgttt ttggcgaatg cgcggctgtc ggaaaaatcg
     2701 ctaaacggtt atctgaaagt ccgccgcctg atccgtcctg ccgccgcttc gctgacgggt
     2761 tgtttggtgc agacggaggc ggatgcggcg cggttggcga aattgggcgc ggcatccgtg
     2821 caggtgtgcg gcaataccaa atacgacctg atgccgtcgg aacagatgaa aacgctggcg
     2881 gggcagtttg aaaaacgcat cggaggcagg ccggttgccg tgtgcggcag cacgcgcgtt
     2941 tatcggggtg aagacgaggc ggaaaaactg ctggcggcgt ggcaacaata tcgcggcgat
     3001 gcgctgctgg tcgtcgtgcc gcgccatccc gagcattttc agacggtatt tgaaacggca
     3061 aaacgcttcg ggtttaaggt tcagcggcgc agcgacggtt tgccggtcga acccgatacg
     3121 caggtgtgga taggcgacag tatgggcgag ctgtatgcgt attacctgtg cgccgatgtc
     3181 gcttttgtcg gcggcagtct ggtcgattcg ggttgtcaga acatcatcga accgctttcc
     3241 tgcggcgttc cgacgatatt cggcttttcg acctacaatt tttccgaagc ctgccggcac
     3301 gccttggcat cgggtgcggc ggttcaagtt gaatcggcgg atgcgtggcg ggaagccgtt
     3361 gaaaaagcct tatcgtccga ggggggcgga atgcagatgc aggcacgcgt ggacggcttt
     3421 atcgcgcaac atcgcggagc gggcgcgaga atcgccgagg cggtacggga agcggtatgc
     3481 ggacatcggg gacgatagtg atacaatccg tatccgagtt ttccggttgg agtaccgtat
     3541 gagtatttat gccgtcgcgc acatcgtcca cctgtattgc gccatcgcct ttgtcggcgg
     3601 cgtgtttttt gaagtgctgg ttttgtccgt cctgcatacg ggacgggtgt cgtgcgaggc
     3661 gcggcgcgaa gtggaaaagg caatgtctta ccgcgccgtc agggtgatgc cgtttgtggt
     3721 cggactgctg ttcgccagcg gcatcgtgat ggcggcaaac cgctatcttt ctatattggg
     3781 cgaaccgttt gccacttcct tcggtacgat gctgacgctg aaaatcctgt tggcgttcag
     3841 cgtgttggcg cacttcgcca tcgccgtcgt caaaatggcg cgttccacac tgaccgtcgg
     3901 ctggtcgaaa tacatacaca ccgtcgtctt tacccatatg ctgctgattg tctttttggc
     3961 aaaagcgatg ttttatatca gctggtaaca caactacatt tcaaatcagg agattgaacc
     4021 atgacagaat atcccggcat cgggtcgccg ttgttttacg gcgttttttt tgcggcagtg
     4081 ctggtcatga ttgccttgga tatgttttcg ctgaagaaaa acagcagcca taaagtcggc
     4141 gtcaaagaag ccttggcatg gagcggcttg tgggttgccg tatcctgcct gttcgcgggc
     4201 tggctgtatt ttgaactcgc cggcaatctc ggctacggcg cggcagtcgc aaaagaaaaa
     4261 gtattggaat tctttaccgg ctacattttg gaaaaatcgt tggcagtcga caatattttc
     4321 gtgttcctga tgatattcgg ctacttcaaa gtcgcaccac agtttcagca ccgcgtgctg
     4381 ctgtacggcg tattgggcgc attggtattg cgcactgtca tgattttcgt cggcgcggca
     4441 ctggttcagc agtttgagtg gattctgtat ctgtttggcg cgttcctgct ctatactggt
     4501 atacacatga tgaagcccga aggcgatgag aaagaggatt tggcaaacag caggctgctg
     4561 aatgccgtca agaaagtcgt tccggtcggc acggaatttc acggcgagaa attttttacc
     4621 gtcgaaaacg gcaaaaaaat cgccacgccg ctgtttttgg tgctggtcat gattgaattg
     4681 agcgatgtcg tgtttgccgt ggacagtatt cccgccgtct ttgctgttac caccgatccg
     4741 tttatcgtgc tgacctccaa tattttcgcc attttgggtt tgcgggcgat gtatttcctg
     4801 ctggcggatg tggcggaacg ctttatcttc ctgaaatacg gcttggcatt cgtgttgagt
     4861 tttatcggtg tgaaaatgct ggtaatgcat tgggtgcata tcccgatttc cgtttcgctg
     4921 tcggtcgtgt tcggcgcgtt gggtgcatcg atactgacct cgttaattta tacgaaaaaa
     4981 cagcctgata aataaaatgc cgtctcaacg ccgacaaaat ggttgacagc atcaggcttg
     5041 atgtatagaa tttcgagctt gtcgggtcgt tagctcagcc ggtagagcag cggactttta
     5101 atccgttggt cgagcgttcg aatcgctcac gacccaccag ataaaacaaa aaaagctgag
     5161 ttttcaaaac tcggcttttt tgtcttccga caatccttgt tcgaaaagcg cggcatttcg
     5221 tcaaattctt tggtgcggct tccgtatttt tcccgaaaat cccttataat tccgcctctg
     5281 caaccttcat cgggggatgc tttatgcgtt gtcccgagta ttgaaatatt acaagtaccc
     5341 accaggaaag aacaaacgtg gacaaactga aaatctccgc aaacggcccg ctcaacgggg
     5401 aaataacggt ctcgggcgcg aaaaacgcgg cattgccgct gatgtgcgcg ggtttgctga
     5461 catcgggtac gttgcgcctg aaaaacgtcc ctatgctggc agatgtgaaa accacgcaaa
     5521 agctgcttca ggggatgggc gcgcgcgtcc tgaccgacaa tatcagcgaa tttgaaatca
     5581 acggcggtac ggtaaacaat acctgcgctc cgtatgagct ggtcagaact atgcgcgcct
     5641 cgattttggt gcttggcccg acgctggcgc gtttcggcga ggcgcaagtc agcctgccgg
     5701 gcggctgcgc catcggttcg cgccccgtcg atcagcattt aaaaggcttg gaagcgatgg
     5761 gggcggaaat cgtcatcgaa cacggttacg tcaaggccaa aggcaaactc aaaggtacgc
     5821 gcgtggcgat ggatgtcgtt accgtcggcg gcacggaaaa cctgctgatg gcggcgacgc
     5881 tggcggaagg tacgacggtt ttggaaaact gcgccattga gcctgaagtg gtcgatttgg
     5941 cggaatgcct ggtcaaaatg ggcgcgaaaa tcagcggcat cggtacgtcc acgatggttg
     6001 tggaaggctc ggacgagctg cacggctgcg aacacagcgt cgtccccgac cggattgaag
     6061 cagggacgtt cctgtgcgcg gtggcgataa ccggcggcag ggtggttttg cggaatgccg
     6121 cgccgaaaac gatggaagtg gtgttggaca aactggttga ggcaggtgcg gtgattgagg
     6181 cgggcgacga ttggatcgcc atcgatatgc ggcagcgtcc gaaggcggtg gacatccgta
     6241 cggtcgtcca ccccggcttc cccacggata tgcaggcgca gtttatggca ttgaatgccg
     6301 tggcggaggg aagctgccgc gtggtggaaa cgatttttga aaaccgcttt atgcacgtcc
     6361 ccgagttgaa ccggatgggg gcgaacatca caaccgaggg caatacggca tttgtgcagg
     6421 gtgtggaaca gctttccggc gcggtcgtta aggcgacgga tttgcgtgcg tccgcaagcc
     6481 tcgttatcgc cggtttggcg gcgcgaggcg aaaccgtggt cgaacagatt taccacttgg
     6541 atcgcggtta tgaaaatatt gaaaaaaaac tcggcagcgt cggcgcgaaa atcgagcgcg
     6601 tatccggctg atcgggttgc gatgccgtct gaagccttca gacggcatca attgtttctg
     6661 tatcgcaaac actgattgaa aaggactgat tatggcattt ttaaaactga ccgaacaaaa
     6721 cgtgcggggc aaaaccgtcc tcatccgcgc cgatatgaac gtgccgttca aagacggcaa
     6781 aatcagcgac gacacccgta tccgcgcctc gattgcgtcc gtcaaatact gcttggacaa
     6841 cggcgcgtcc gtcatcgtga tgacccactt gggccgcccg accgaaggcg aattccatcc
     6901 cgaagacgac gttgcgcccg ttgccgcaca cttgggcagc ctgttgggca aagacgtaaa
     6961 agtattgaac gactggcgcg aaaacaaacc ggctttgaac gcgggcgatg tcgtcatgct
     7021 gcaaaacgtg cgtatcaaca aaggcgagaa gaaaaacgat ttggaactgg gcaaagccta
     7081 cgcttctttg tgcgacgtgt tcgtcaatga cgcgttcggc accgcccacc gcgcccaagc
     7141 ctcgaccgaa gccgtcgctc aagccgcgcc cgttgcctgc gccggcgtat tgatggcggg
     7201 cgaactcgac gctttgggca aagccttgaa acagcccgcg cgcccgatgg ttgccatcgt
     7261 tgccggcagc aaagtgtcca ccaagctgac catcctcgaa tcgctggcgg acaaagtcga
     7321 ccaactcatc gtcggcggcg gtatcgccaa caccttcctg ttggcggaag gtaaagccat
     7381 cggcaaatct ttggcggaac acgatttggt ggaagaatcc aaaaaaatta tggcgaaaat
     7441 ggcggccaaa ggaggttctg tgccgctgcc gaccgatgtc gtcgttgcca aagcctttac
     7501 cgccgatgcc gaagcggtcg tgaaagacat tgccgacgtt gccgaagacg atatgatttt
     7561 ggacatcggc ccgaaatccg ccgccgagct tgccgatttg ctcaaagctg ccggtacggt
     7621 tgtatggaac ggccctgtcg gcgtgtttga gtttgaccaa ttcgcaggcg gcacgaaagc
     7681 tcttgccgaa gccattgccc aaagcaaagc attctcgatt gcaggcggtg gcgacacgct
     7741 ggcggcgatt gctaaattcg gcgttaccga ccaaatcggc tatatttcta ccggcggagg
     7801 cgcgtttctt gagttcttgg aaggtaaaga gttgcctgcc gtagctgctt tggaaaaacg
     7861 cggcgcgtaa gcggtttgat ataaaaaatg ccgtctgaaa cgttgtgctg tttctgacgg
     7921 catttttgtg tggcggttat tgtgctttgg ctgcccattc cgccggagtg gcggcaaccg
     7981 aaatggaaag tgcgtgcagt tcgttacttt ccagttgggc tttgagtccg tctttaatca
     8041 ggcggtggcg cgcgaggcgt gccttgcctt caaattctga tgaaacgatg acggcgaaaa
     8101 aatggtgtcc gtcgccttct acttcgatat gttcgcattt tgccacgcct tcaatcatgg
     8161 cttttacttg ttccgaggtc agcatggtag gttccttgtt ggaaaaatgc gccattatac
     8221 tggcaaattg aaatgccgtc tgaaaacggg ttcggacggc atttttgacg gtgttttatt
     8281 ttttggcttt gaagccgagc aggtgctggg tggtggcaag ccacgcgccg aatacgccca
     8341 acgcgatgac gaagccgaac accagtgcga tttctcccgg gtagaagaaa cgccagccga
     8401 tattaagtcc gtagggtttg aagatggcat cgaccaaggg gcgcacggca gagagcagcc
     8461 aaccgcaaag ccccaagctg acggcggcgg aaaggatgct ctgccacatg gcttgataaa
     8521 ggaatgggcg gcggataaac gacgcgggcg cgcccaagag tttggtgatt tcgatttctt
     8581 ctttgcggct gaggatttgc agtcggatgg tgttgtgcgc gacaaggacg aacgccatcc
     8641 ccagcgtcag ggaaagaaac cataagattt tacggatgaa ttcgttgatt tggtacagtg
     8701 tctgtaccca ttccgtatcc atgttggcgg attcgaccat aggcagtttg gtaatgtccc
     8761 ggtagattgc ctgcatttgg gcgggcgtgg ttgccgggtc gggggtaacg ataaagacat
     8821 ccggcagggg gttaccgtca agcatggaaa tcagattttg gtcgagattg gactgtaatt
     8881 cttccagacc gtcttctttg cctatgaagc ggatgttgtc gagccgtttg tcgcgcgcca
     8941 gcaggctgcg gacggtatcg ctgtcgcttt gtgcggcggc ggtttccata tagattgtga
     9001 tttgcggcga ctcattgagt ttgcccaaca cgctttgccc gctttggatg cccaaataca
     9061 taaacagcgg cagggtcatg gcgacggcga gcattatgag ggtaagcagt gtgccgaaag
     9121 gttggcgcag aagctgtttg agcgcggtgc gcgcggattc gacgtgcagc gagaggtagt
     9181 ggatgatgct catgcgagtc gtcctttcga gaggcgcagg atgcggtgtc cgtagtccgc
     9241 catcagggtt tcgtcatgtg cggcgacgat gacggttgtt cccgcttcgt ggaaggtttt
     9301 gaacaattcc ataatatcga gcgcgtaggc gcggtcgagg ttggcggagg gttcgtcggc
     9361 aatcagcagg ccgggctggt gaacgacggc gcgggcgatg cacaggcgtt gttgttcacc
     9421 gccggagagg gttacgggat cgtccaattc tcgtcctttc aggccgactt tttcgatggc
     9481 gatgcgggca cgctcttcgg ctttgcgcgg cggatagccg ataatccgaa gcggcaggat
     9541 gacgttttgc aggacgttgc ggtcgtagag gattttgtgg tcttggaaca cgatgccgat
     9601 gtgttggcgc ataaagccga tttggttgtc ggacaatgtg ccgaggtcct gcccgttaaa
     9661 caggattttg cccctgctcg gcttggtgat gcccgaaatc agcttgagga cggtggattt
     9721 gcccgaaccg gagtgtcccg cgataaatat catttcgcct ttgttgattt ggaagctgac
     9781 gtttttcagg gcttcaaaac cgccgggata ggttttggaa acttgttcga aacggatcat
     9841 aggaggtcct gtaaggaatg ggcggcatat cgtttcgggc ggttgcgtcc gcagggatat
     9901 gccgtctgaa caataggtaa gacagtgccg attataaaga ttccgcctgt ttttagatag
     9961 tggataagtt tggcggatac cgaaggtcgg gcgggaaaaa tgccgtctga agcggattca
    10021 gacggcatcc ggcgtttaac ggcattttga atgggcgagt ttgacggctt cggtcaggct
    10081 tttttcgttc acttccccgg taatggtttg tttgtatccg catttcgggg cttcgacgac
    10141 ggtaaagggc agtacgccga cattgtttcc gtaggatttc ataaagtttc ggctgttcgc
    10201 cccggtgtaa cgccaaatcg ggtaggaaac aggggtttgc ttgaggaagt tgccgatatt
    10261 gtcggatgtg tcgagcgcga tgccgaccat atcgacactg ccttttttct gcgctttgta
    10321 ccatttggac atggcaggca tctcttttcg gcacgggccg caccaggttg cccaaaggtt
    10381 gacgatgcgt acgggggctt tgagtgattg caggctttgc ggggtgttgt ctttccatcc
    10441 ggccagttcg tctgccgagg cggtatgtgc ggcaaatgtg gcggcaaggg tgattgcggc
    10501 aagattcaag tatttcatcg ttttgtcctt tgtatgtcga ttcgggtatt gtaaaccgtt
    10561 tggtacggtt gtaggcggga tattgagtaa aaccctgtgt aagccgataa taaggggatt
    10621 gtcgagaagt aaggaaatgt catgtctgaa atcaaaattt tccacaaccc ccgttgcagc
    10681 aaatcgcgtg ccgccttgtc cctattggaa gaacgcggca ttgctgccga agtggtcaaa
    10741 tatttggata cgccgcccga cttgtccgaa ttgaaggata ttttcaacaa attgggcttg
    10801 gcatcggcgc gcgggatgat gcgcgtgaaa gatgatttgt ataaggaatt gggtttggac
    10861 aaccccaatt tggacaatga cgcgctgctg cgtgccatcg ccgatcatcc cgccctgttg
    10921 gagcgtccga ttgttttggc gaacggtaag gcggctgtcg gcaggccgtt ggaaaatatc
    10981 gaagcggtat tgtgaacaaa cggctgtttt gcagccgcaa cggcttgcgc tattacctgt
    11041 tgggcggttt ctgtttgagt gtttttccgt ttttgctggt gtttgcctca tccgtttggg
    11101 cggtttatcg gacgggcggg caggttttgc cgccgtatgt ccgggcggat gccgcgctgg
    11161 tgttgggcgc cgccgcgtgg gacaaacgcc cttctccggt ttttcgggaa cgcatcaacc
    11221 acgccatcgc gctttatcag agccgcaggg taggcaaaat cgtgtttacg ggagggcgaa
    11281 ccaaaaaagg ctatatgacc gaagccgagg tcgggcggcg gtacgcgctc aaacaggggg
    11341 ttccggcgcg caacatcctg tttgaaaaca cttcgcgcaa cacttatgaa aacctgaaca
    11401 acatccgtcc ggttttgcgt gccaacggta ttgccagcgt ggtgattgtc agcgatccct
    11461 accatttggc acgggcggcg gaaatggcgg aggatttggg tgtccgcgtt tatatgtctg
    11521 ccacgccgac cacgcggttt gatgcgggaa ataagaaaaa aatctttatg ctgcaagagg
    11581 gatatgcgtt atccctctac cgtttggaaa aatgggggcg ggattttttc aattagctgt
    11641 ttcattgaac ttttttttgg acgcaatccc gaagaaatcc ggtcggcggc gcgtgataca
    11701 ctgttccgcg tgccgaagca ttgaaaacaa ggaaaatgcc gtctgaaact tatccgcagg
    11761 cagggttcgg acggcatttt taatgcccaa gcacggtaaa aacagtaaaa taagccgttt
    11821 taaagattct ggagccatca tgaccgtcaa aacccgtttc gcccccagcc ccaccggcta
    11881 cctgcacatt ggcggcgttc gcaccgcctt gttttcatgg gcgtttgccc gccatcacaa
    11941 aggcgagttc ctattgcgta tcgaagacac cgacttggcg cgttccaccg ccgaatccgt
    12001 caacatcatc ctcgacggca tgaaatgggt cggtctcgat tacgataacg ccgacaacgt
    12061 ggtgtaccaa acccgccgct tcgaacgcta taaagaagtc atcgccgaac tcttggcaaa
    12121 aggcgatgcc tactactgct attgcagcaa agaagagctg gaagcgatgc gcgagaaagc
    12181 cgaaaaagaa ggcacggcga cttacgaccg ccgctggcgg ccggaagcag gcaaaaccct
    12241 gcccgaaatc cctgccggcg tgcaacccgt cgtccgcttc aaaacgcctt tggatggcgt
    12301 aaccaagtgg acggacctgg tcaaaggcga aatttccatc cccaacgaag ccctcgacga
    12361 cctgattatt gcacgcgccg acggcacacc gacctacaac ttctgcgttg tcgtagacga
    12421 ctacgacatg ggcgttaccc acgttatccg cggcgacgac catgtgaaca acaccccgaa
    12481 acaaatcaac atcttaaaag ccatcggcgc aaacctgccc gaatacggtc atctgcccat
    12541 gattcttaac gaacaaggca aaaaaatctc caaacgcagc ggcgatactg ttgccattac
    12601 cgatttcggc gcgatgggta tcctgcccga agccatgctc aactatctgg cgcgcttggg
    12661 ctgggcgcac ggcgacgacg agttctttac gatggaacaa ttcatcgaat ggtttgattt
    12721 gaaagacgtt tccccgtccc caagccgtat ggatttgaaa aagctctatt ggatcaacgg
    12781 cgaacacatc aaaatcacgc ccaacgagaa actcgccgaa ctcgtcaaac cgcgtctcgc
    12841 tctgcgcgat atccatgaaa ccgaaaaacc tgcgttggaa gacgtgttgg cacaggttaa
    12901 agaccgcgcc caagatttga acgccttggc agacgaatgt ctgtatttct acaaaaaaca
    12961 agtccctgcc gaagccgatg ttgccaaaca ctgggacgac gaagccgccg ctcgtatgct
    13021 gcgctttgcc gaacgcctcg agggtttgga agactggaat gccgaagcca tccacgacct
    13081 cttcaaacct ttctgcgacg aagaaggcat caaaatgggt aaactcggta tgcccctgcg
    13141 cctcgccgtc tgcggtacgg cgaaaacccc aagcgtcgat gctgtgttgg cattaatcgg
    13201 caaagaagaa gtgttgaaac gcatccgcgc ttaagttatc cacaggcgtg ggcgatgccg
    13261 tctgatgtcg gaatgcggct tcagacagca ttcaaacgga agttgaacat gaaaaaaata
    13321 ttgtattttc tgatgtttgt tttttctaca agcgtatggg cgggggatgc ggaagacaat
    13381 ctgctcagca tccaatccgg ctatcgtgcc ttactgcaaa aacaaaacaa tctggacgga
    13441 aaaatcatcg ggatgcagtc ggatttggaa gatgcgcgcc ggcgtttgca gacggctcag
    13501 gcagacatcg cccgtttgga agcggaaatt cctgcagcaa tggcgcaaaa agcccggcag
    13561 gctgaagagc tgaggcaaat cggagtgcgt ttggactatg cttggaatgc ggtttacggc
    13621 gcagggggaa cgaaagcgtc ggggaattga ccgatgaatt ccctctttgt ggacaatact
    13681 gttttcatta cacggctgaa agccgggcat atcggcaggt tggttcaggc gttgtttgag
    13741 gagtggcacg gatttgaacc gtggtcttct gtggataaga ttcatgccta ttacggcagg
    13801 tgtttgaagg atgacgaact gccgctggct tttgcggctg tggatgattc cggaaccctg
    13861 ttgggttcgg ctacggtcaa gcggcatgat atggaaagtt ttccacagta tgaatattgg
    13921 ttgggtgatg tctttgtttt acctgaatat cgcggaaaag gcattggcag gaggctggtc
    13981 gcccactgca taggcgcagc gcgttcgctg gggataaagt tcttgtatct ttatacgcct
    14041 gatgtgcaaa tattttatga atcattcggc tgggcggttg tcgggcgaca tttccataac
    14101 ggtgaatggg ttacggttat gcgtttggat atggataagg tttaagccga atggacaaat
    14161 gccgtctgag ctgttcggac ggcattttta tgtttggaaa cttcttgtca gataatgttt
    14221 atccacagat ttttccatat ggtttgatgc tgttccgcca acggaaatta agatacggat
    14281 ttgcacaaat ctttcagacg gtacagttct gacaatgctt tgcgcggggt caggctgtcg
    14341 ggatcgagtt tttccaaggc tgctgccaat ataccttcaa aatgtttttc ctctgcttta
    14401 tccacaaagt tgcccacatt cggttcatct cctttttcag acggcatggt actgaaaata
    14461 tccagttggg gacggttcgc ggcggcttgg ttttccagtt cgttcaaatg cttttgggcg
    14521 gatttcaatg cgcgtacagg caggccggcg agtttggcga cggcaatgcc gtagctttta
    14581 ccggcgggac ccggttggat ttggtgcagg aaaacgatgt cctgtccctg ttcgagcgcg
    14641 gaaaggtgca tattgacggc ggcggcgtgg gcttcgggca ggtaggtcag ctcgaaatag
    14701 tgggtggcaa acaggctgaa ggatttgttt ttttgcagca ggtgttcggc aacggcgtgc
    14761 gcgagggcga ggccgtcgaa agtggaagtg ccacgtccga cttcgtccat taaaacaagg
    14821 ctttgttcgg tggcgtgatg caggatgtag gcggtttcgc tcatttcgac catgaaagtg
    14881 gagcggttgg aggcgaggtc gtccgatgcg ccgatgcggg tgaagatttg atcgatgggc
    14941 ccgattgtgg cggcatcggc aggcacaaaa cagccggtgt gtgccaataa aacaatcagc
    15001 gcgacttggc gcatgtaggt ggatttgccg cccatattgg ggccggtgag cagcatgagg
    15061 cggtgtttgt ggtcaaggtt ggtgtggttg gcggtgaagt ggcgtacctg ctgttcgaca
    15121 acgggatggc ggccgttttc gatgtggata gccggatagt cggcaaactc ggggcggacg
    15181 aagttccgct cttttgccaa ggctgaaaat gtggacaata cgtccagcgc ggcggcggct
    15241 ttggcggctt tttgaagctg cggcaatgcc gtctgaaggt ttttcaatac gccgtcaaag
    15301 agttgttttt ctaaggcgag ggcttgctct tgagcagtca gcactttgtc ttcaaaggct
    15361 ttcaactccg gcgtgatgaa gcgttcggcg tttttgaggg tttgccggcg ttggtagtcg
    15421 gcaggtgctt gttcggcttg ggttttggac aattcaatgt aaaagccgtg aacgcggttg
    15481 aactcgactt tgagtgtgga caaaccggta cgttcgcgtt ccttggcttc caaatccagc
    15541 aaaaattcgt cgccatggtt ttgaatgcgg cgcaattcgt ccagttcggg atgaaaaccg
    15601 tggttgatga cattgccgtc tttcagccag acggaaggtt cgggcaaaat ggcttggcgg
    15661 agctgttcgg ctgtggatag gttttccggg aaaacggctt tgagggtttc caacaggctg
    15721 ctgccgtttg cggacaagtc gatttgtgcc aactcgaaca gactgtcgcg taaagatgcc
    15781 aaatcgcgcg ggcgggcgtt gccgacggcg atgcgggcag caatgcgttc aatgtccgca
    15841 atgtttttca gacggcattg gaggggtttg tattggcttt ccagcgcggc aacggcttct
    15901 tggcgcgctc ggatgtgggc gcggttgcgt aaagggtggt gcagccagag agccaagagg
    15961 cggctgccca tatgggtagc gcaaaggtcg agcgtggaca tcagggtcgg cgattttttg
    16021 ccggagaggg tttgcgtgat ttcgagattg cggcgcgtgg cagcatccat accgatatat
    16081 tggctgtcgg tttcgagcga caggccgtcc aaatgttgcg gcatcaggtt ttgcgtcaga
    16141 cggatatagt tcaacagtgc acctgccgcg ccaatcgcaa cggcgtgttc tttgccgtcc
    16201 aaaccgaagc cgcgcaaatc ctggcagccg aaatattccg tcagcagttt ttcccccgcg
    16261 tcggcggcaa actgccacgc gttcaggcgc gtaacacccg atgccgtctg aagttgcggt
    16321 gcgtttttac tgtccggcaa cagaatttcc gccgcctgca ggcgcgccag ttcgtcgtcc
    16381 aatttatcca cagttgtcag cttggttttg aattcgccgc tttgcagcga tgcccacgcc
    16441 aaaccgatgt attttttgtc gggggacacg gcaacgatac ggttggtttc cttgtcttcc
    16501 agcaatgcgg aatcggtcag cgtgccgggc gttacgatgc gcacgacttt gcgctccaca
    16561 ggccctttgc ccgcgccgac ttcgccgacc tgttcgcaaa tcgccacgct tttgcccaac
    16621 ttgactaggc gcgccagata ttgttcggcg gcgtgaaacg gcacgcctgc cattttgacc
    16681 ggctcgccat ccacctgtcc gcgcgtggtc agggtaatat ccaaaagttt tgccgcttct
    16741 accgcatcgt cgaaaaacat ctcgtaaaaa tcgcccatac ggtaaaacac cagtttgtcg
    16801 gtatgttgcg ctttgatgcc gaggtattgc tgcatcattg gggaaacggc ggatttggac
    16861 atggggctgc cttatcatta ggaaaacggt attgtagcaa aaggttttgt cttcgacgga
    16921 atgagactga ccgtaagcct gtcaataagg ttgtggagac aactaggaaa acagcaaagt
    16981 tatccacaga aatattatta agtcaaaaaa catccacgct tatctgtctt atacagcaag
    17041 tcttaaactc aaacttattt gacaaaaaga taatgaaaat attggatatt tgctacttac
    17101 gcacaagcag gttggcaatc atcaaaatca tcattaaaat ttaaattcaa atattgatgg
    17161 taaaggtttt ggaaatctgt gcaaacagca aaattcatct atatcaaata agcgtcaagt
    17221 agttagatgt aatagtggaa tgtaacttta tttcagaata caatgcaggc atcggacttt
    17281 atttcacaac ctggagacaa aatatgagca ttaaagtagc gattaacggt ttcggccgca
    17341 tcggccgcct cgcattgcgt caaattgaaa aagcccacga catcgaagtc gtcgccgtca
    17401 acgacctgac ccctgccgaa atgctgctgc accttttcaa atacgacagc acgcaaggcc
    17461 gtttccaagg tactgccgaa ttaaaagacg atgccatcgt ggtaaacggc aaagaaatca
    17521 aagtttttgc caatccgaat cccgaagaat tgccttgggg cgagttgggt gtggatgtcg
    17581 tcctcgaatg taccggcttc tttaccaata aaaccaaagc cgaagcacac atcagggccg
    17641 gcgcgcgcaa agtcgtgatt tccgcacccg gcggcaatga tgtgaaaacc gtcgtatatg
    17701 gcgtaaacca agacattttg gacggcagcg aaaccgttat ctccgctgct tcctgcacca
    17761 ccaactgcct tgccccgatg gcggcagtcc tgcaaaagga attcggcgta gtcgaaggcc
    17821 tgatgaccac catccacgcc tacaccggcg accaaaacac ccttgacgcg ccgcaccgca
    17881 aaggcgattt gcgccgcgcc cgcgccgccg cgctcaacat cgtgcccaac agcaccggtg
    17941 ccgccaaggc catcggtctg gttatccctg aattgaacgg caaactcgac ggctccgccc
    18001 aacgcgtccc tgttgccacc ggctcgctga ccgaattggt ttccgtcctc gaacgccctg
    18061 taaccaaaga agaaatcaac gccgcgatga aagccgccgc cagcgaatct tacggctaca
    18121 acgaagatca aattgtttct tccgacgttg tcggcatcga atacggttcg ctcttcgatg
    18181 cgacccaaac ccgcgtgatg accgtgggcg gcaaacaatt ggtgaaaact gttgcctggt
    18241 acgacaacga aatgtcctac acctgccaac tcgtccgcac tttggaatac tttgcaggca
    18301 aaatctaagg cttgaacaaa cctgtggata agtaaatgcc gtctgaacac attgcgttca
    18361 gacggcattg tttatctgta tagtggatta aatttaaacc agtacggcgt tacctcgcct
    18421 tgccgtacta tttgtactgt ctgcggcttc gttgccttgt cctgatttaa atttaatccg
    18481 ctataacttg atattgcggc ttatggcgaa caaacaacag ccgtttgttc aactgctatg
    18541 cggcaaaacc ggatttttgc ccgatttaaa gcggggttgg ggaaagatca ataacggttg
    18601 cacggttttc ctcgatttga aatctgactt cgtaatctgc aatattcatc acataaatcc
    18661 gttcgggaat attctgatag gcggggcgcg gatcttgggc aatgctttgg ctgataaggt
    18721 ttttggtgtt tgcagataaa ttttccgcgc cgatgttttc ctgccaaacg acttccaact
    18781 ctacgggttt gccgctgacg aaaccagatg cggcatcggg tttggattcg acaaagggga
    18841 tataaggctt gatgtccaca atcggcgtgc cgtccagcag gtctgcgccg ctgcaataga
    18901 ggcggacggg tttgccggtt tcgatgcgtt cgagtttcag gagcgagagt ccgagatggt
    18961 tggggcggtg ggggctgcgc gtggcgaata cgcccatttt ttgtttgccg ccgagccgtg
    19021 gcgggcgcac catttgtgcc cagccttcat ccaatacgcc gtgaaaaata aaacttatcc
    19081 acacatagtc gaagtgttcc agtccgcgta cgctgtctgc ggtaaattcg ggattcagct
    19141 cgatgcatac ttctgcggca gagaccaaac cgggctggcg ggcgatgccg aatttctgtt
    19201 tgtagggcga tcgggcggtg gcgataggga cgatggtgta agtcatgagg attgtggata
    19261 agtttttcgg aaaaacctta tcttatcaca gcctgtttta ccgcttttgg gcagtaattt
    19321 gttataatac agggcatttt aattgcgttg aaatgatgag atgattgttt ccattgatgt
    19381 tgatgcacaa aaaactttta cgcctttgtg tcctaaagag ctgcctgtaa acgaggggca
    19441 tttgattgtc gaagaattga atgcccaagc cgctttggcg gatttgcgcg tgatgacgaa
    19501 agatgcgcat catgcggcag caaaatggct tgtggataac cctgttgata tgttgaagcc
    19561 gacaggtttg cccgatgcgg atttgacttg ggtggctcat gcgatggttg gtacgcgcgg
    19621 ctatgaattg ttggacgggc tgccttgtgc caaagaatac gattattgcg tttggaaagg
    19681 tattgatcct gaattgcatc cttacggcgc gtgttttcac gatattgagg aaaaactaag
    19741 cacagggctg attgaatggc tgcgttgtca aaatacggat acggttatta tcggtgggtt
    19801 agctacggat tattgtgtta aaacaacggt tttgcagtta ctcaaaggcg gtcgttggca
    19861 ggttgtcgtc aatgaagcgg cttgtcgggg tattgcgccg gaaaccatcg aaacagcatg
    19921 gcaggaaatg cattctgccg gggcaatcat cttaaaaaac gctgatgaaa taaataaata
    19981 tattaataat caataagtta aaattgtttc acgtgaaacc cccttcctaa atatgaaaat
    20041 tttgcttgtc cgcttgtcta gtatgggcga tttaattcac actttgcccg caatcgaaga
    20101 tttggcgcga caatgtcctg atgtagaact gcattggcta tgtgaggctg gatttgcaga
    20161 tattgcgcgc ctgcatccgt ttgtaaaaaa aatccatgtg atgaaatggc ggcaatggcg
    20221 caaacatctc tttcgggctg aaacttggcg ggaaatgggt catctgaaac agactttgcg
    20281 gcaggaagta tttgatttcg tattggacag tcaaggtctg attaaaagcg cgtgtttcgc
    20341 taaaatggcg aaatccccta tttatggttt ggataaaaac agtgcgcgcg agggatgggc
    20401 tgctttggcg tatgtaaaaa catacgctgt accgaaggga aaaaatgccg tttggcgcaa
    20461 ccgtgaactg tttgcccaag tatttgggta tgtaatgccg gaaacgcagg tatttggctt
    20521 gactgttcct gaagcaggcc gtctgaaaaa tttagcgcag ccgtattatg cggctttgca
    20581 tgcgaccagt cgggacagta agttatggcc tgtggaaaac tggcggtcgt tgctgcaaaa
    20641 gttgaatgaa gaacagcaat gcaatattta cctgccttgg ggaaatgaag atgaaaaaac
    20701 gcgtgccaaa caaattgcag acggactgcc gtttgctatt gtgtgcgaca aaataaattt
    20761 attgcaggca gcgtatctgc tgaaatacgc ggtcggaatt gtcggcgtgg ataccggttt
    20821 gctgcatttg gcaaatgcct tggaaaaacc tgtggtcggc atttataccg ataccgatcc
    20881 gattaaaaca ggcgttcagg tttcgccaat tgcaaaaaat ttgggcaata tcgggcagat
    20941 tccgaccgca gatttggttt atcaagcgct gatggattgt gttgcagcag acaaaggcta
    21001 aagggttgtc tgaaactgat atggcggcat gatattttcc aatttattaa atacaggaat
    21061 gtgtatccgc tagtctgagt aaatgcttta aaaatggtat aatcggcaag cattatccga
    21121 aagatttttg aatgaattcg tttttaagga aaacggattt ggttttatag ggaagaaggt
    21181 ttggtttcgc tggatggtga aagcagcgtt ctttttagga gggttcaatg aaagcactgg
    21241 tcgcagtaaa gcgcgtagtg gactacaacg tcaaagttcg tgtaaaagcc gatggttcgg
    21301 atgtggatat cggcaatgtc aaaatgtcga tgaatccgtt tgacgaaatc gctgtggaag
    21361 aagccgtccg tttgaaagaa gccggaaaag taagcgagat cgtagcggtt tctttgggcg
    21421 aaaagaaatg cgaagaaacg ttgcgtaccg ctttggcgat gggtgccgac cgtgcaattc
    21481 atgttgaaac cgatgcgaaa ttggagccgc tggcagttgc caagttgctg aaagccgttg
    21541 cggacaaaga aaatccgcag attttctttt tgggcaaaca ggcgattgat gatgatgcca
    21601 accaagtggc gcaaatgctg gctgctttgc tgaatgcggc gcaaggtacg ttcgcgtcca
    21661 aagtacaaat tgaaggcgac gaagtgcaga ttgtgcggga aatcgatggc ggcgaagaaa
    21721 ccatcgcatt gaaactgcct gctgttatca gtgctgattt gcgtttgaac gagccgcgct
    21781 ttgtcaaact ccccaatatt atggcggcaa agaaaaaacc tctggaaaaa ctggcgcctg
    21841 ccgatttggc taccgatatt ttacctcgtc tgaaaacggt gaaatttgcc gaacctaagg
    21901 cgcgtcaggc aggcgtaaaa gtagcaagcg ttgccgaatt ggttgaaaaa ttgaaaaacg
    21961 aagccaaagt gatttgagga ggctgaaatg agcgtattga ttattgtcga acacgacaac
    22021 aaacagttga atcctaccac tttgcatgct gttaccgctg ccgccaagct gggtaaagtc
    22081 gatttattgg ttgccggaag cggtgcatct gccgtagtag agtccgcaaa acaagtggcg
    22141 ggtgtggaaa aagttttggt tgcagatgct gcccattatg ccgaaggttt ggctgaagag
    22201 ttggctccgc tggttgttaa attggcagcg gattaccgct atgttgcagc aacggcaacc
    22261 acattcggta aaaacctttt gccccgcgta gccgccttat tagacgtacc gcaaatttct
    22321 gatttgaccg agattgtaga taacacgact tttgtacgtc cgatttatgc aggtaatgca
    22381 tttgaaaccg tgcaagccaa tgcggaaaaa ttggtgctga ccttccgtgc gacggctttt
    22441 gacgcagcgg cggtgcaagg tggtaatgct gaggtaatta atattgaaac aacccctgcc
    22501 caaaacctga gtcgttttgt taaccgtcag ctttcccatt ccgatcgtcc cgaactgact
    22561 caggcaaaag tgattgtttc tggtggtcgt gcgttgggta gtgcggaaaa atttaatgaa
    22621 gtgctgacac cgttggcgga tgttttaggt gcggcaatcg gtgcatcccg tgcggcagtt
    22681 gatgccgaat atgcgccaaa cgatgctcaa gtcggacaaa ccggtaaagt agttgcgccg
    22741 caactctatt ttgcaatcgg tatttcaggt gcgattcaac acgttgccgg tatgcaagac
    22801 agtaaggtga ttgttgcaat caataaagat gctgatgcgc cgattttcaa tgtagccgat
    22861 tacggattgg ttggcgattt atttgaaatc gttccacaat taacagaagc attgaaaaat
    22921 taatgtttca cgtgaaactt tcagacgact ttgttattaa tgaggttgtc tgaaaacttt
    22981 tcaacatgat tacgacttat aaaaccatta cttccccgac gcaggctggg tttaaagata
    23041 aaggcagccg ttttatcgca tttgcctatc cgattcggac attggctgat gtgaaaaaat
    23101 acctcgatcc gttaaaggaa gagcaccata aagcacgaca ctggtgttat gcctatcgtt
    23161 tgggcgtgga tggtatgcaa tttcgtgcca acgatgatgg agagccatca ggaagtgctg
    23221 gacgaccaat tttgggacag attgattcgg tgggcatcac cgatgttttg gtcgtggtcg
    23281 tccgctattt cggtggtact ttattgggcg tttcaggtct gatacatgcg tacaaagagg
    23341 cgacggctca ggcgttggcg attgcggaag tgattgaaaa gaatattgaa aaaaccgttt
    23401 ggctgaaatg tgaatatcca tttttgaatg aagcgatacg catcgccaaa caatatcagg
    23461 cggatatatt ggagcaggat ttgcagttgg attgccgatt gacggtaagt ttgtcgttgg
    23521 caaattatga agtctgtgtt gcggcttgga agaatacacg gcagattgaa gtaaatacgg
    23581 aaaagccttt tgaatgaaag gtcgtctgaa atgctttgtg atggtatttc agacgacctc
    23641 ttcgctgact aatcttcttg tgtatatttg tctaaggcat cgacgctgga gcgcaaatat
    23701 aaccaagcca gttgatggaa ttcgcccagc gcgttccata gcgcatcttc actcataatg
    23761 ctgtattcgc cttctgtgcg caaatccacc tccgctccat cttcaatagc ccgatgacaa
    23821 gcctgatatt cgtgggtata aaaattgtcc atatcgcgaa tcaaagcgac ggcatgtttc
    23881 caacggcgga tgtcttcttc caattgcggt agtaaatgac accattcgcg gtatttgctt
    23941 tggatttcat caatacgttt ttgcatggtt gcttgtcctt ttttaatttg tgaataagtt
    24001 gaataggttg cagagtggaa tgaagcggtc ttttgtttga ttttactaaa atttcttcag
    24061 atgggataaa agtccctttg tatcgagttt tcgttaaaag tacatatttg tcaaggagat
    24121 ggcatgaaac tgctggttat cggtaatggt ggtcgcgaac acgcgctggc ttggaaattg
    24181 gcgcagtcgc ctaaagtgga aacagtattt gttgcgcctg gtaatgccgg tacagcgatt
    24241 gaacccaagt tgcaaaacat cgacttgact gcgcatcagg atttgattga attctgtcgt
    24301 aaagaaaata ttgtttttac tgtcgtcggc cctgaagcgc ctttggcggc aggtgttgtg
    24361 gatgatttcc gtgccgcagg actaaaaata ttcggtccga cacaatatgc ggcgcagttg
    24421 gaaagttcca aagatttcgc caaagcattt atggcgaaat acaatattcc aaccgcgcaa
    24481 tatcaaacct ttgaaaacgc cgatgccgca catgattacg tcaatcagaa aggtgcgcct
    24541 atcgttatca aagccgatgg tttggcggca ggtaaaggcg tgattgtggc gatgactttg
    24601 gatgaagcgc atgctgcgat tgatgatatg ctgctggaca acaaaatggg caatgccggc
    24661 gcgcgtgttg tgattgaaga tttcctgcaa ggcgaagaag cgagttttat cgtcatggtt
    24721 gatggcaata atgtactgcc tatggcaacc agccaagacc acaagcgtct tttagacggc
    24781 gacaaaggtc tgaatacggg cggtatgggt gcgtacagcc ctgcgcctgt ggtaacgcct
    24841 gttgtgtacg aacgcgcgat gaatgaaatt attttgccga ccgtagcagg gatgaaagcg
    24901 gaggggcatg agttcaccgg tttcctgtac gcaggtttga tgattgatca aagcggtgca
    24961 ccctatacga ttgagtttaa ctgccgtttc ggcgatcctg aaacccagcc gattatgagt
    25021 cgtctgaaca gcgacttggc ggatttggtt gaagcggcaa tagacggtaa acttgatagt
    25081 gttgctgccg aatggaatcc acaaactgcc gtaggtgtag tgttggcggc gcaaaactat
    25141 cctgaaacgc ctaaaaaagg cgatgttatt tccggtctgg atgctgccaa ccaggtaggc
    25201 aaagttttcc atgcaggtac aacggcaaac gagaaaggtg acgtattgac caacggcgga
    25261 cgcgtattgt gtgttgtggg attgggcgac aatgtggcgc aagcgaaagc taaggcatat
    25321 ggcgcgttgg aaaaaatcag cttcgacggg atgcaatacc gtaaagacat tgccgataaa
    25381 gcgattaacc gttaattaga aagaggatga tgccgtctga agccaagtat gactgatatg
    25441 cttcagacgg cattttatat tatgttattt ccgagaatta tcgctgcatc agcgcaacgt
    25501 aagttaagcg tttatttaaa aaaaggcggt ttggtcgctt atccgaccga atcttgttat
    25561 ggcttggggt gtcttccgac attagccaaa gcactcggta agttggcgca tttgaaaaaa
    25621 agaccgcaac acaagggtat gattgtcatc gggaatcaat ttgaacaatt gcagccttta
    25681 cttcaaatgc cgtctgaaaa tcttcaggat atgcttagaa aagaatggcc cgcccctaaa
    25741 acgttcctat tatccgccaa atcctgtgtc ttacctgagt tgcgcgggaa acagcgcagc
    25801 aagttggcgg tcagggttcc cgcccatgta ggtgcgcgcc gcttgtgtca ggctttgcaa
    25861 acgcctttgg tttcgacttc gtgcaaccgc gcaggcaaac gcgcgtgtcg gacggagagg
    25921 gaagtcagaa ggcaattcgg acgcgatgtg tggattgttg gtgggagaat cggcaggcag
    25981 aaatcgccga gtcagattat tgacggggaa acaggtaaac gtttgcgttg agacctttgc
    26041 aaaattcctt tccctcccga cagccgaaac tcaaacacag gttttcagct gttttcgccc
    26101 caaataccgc ctaattctac ccaaataccc ccttaatcct ccccggatac ccgataatca
    26161 ggcatccggt c
//
LOCUS       DAXHNP010000010        25176 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.010, whole genome shotgun sequence.
ACCESSION   DAXHNP010000010 DAXHNP010000000
VERSION     DAXHNP010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 25176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25176
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.010"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..808
                     /locus_tag="ACFM5C_000296"
     CDS             <1..808
                     /locus_tag="ACFM5C_000296"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6068075.1"
                     /translation="RYRTPNIKYIYQDNQGTAEARNTGIKNSNGKYIVFIDSDDFINC
                     QVLLDFLSKDDIDMPDVVFLNAVKYDKGSVSHFGEDYQPEKILKQSKVEVLKGLCRFR
                     KFPGSACNKIIKRELIIKEKLFFEKEVYAEDIEWSMRLFNAATTFSYLDGCYYYYRQG
                     RKDSKTGTVSEKSIKSLLYILEKNAEMEFDRDISSYLYSFLSYEYLVLLFIMTSKNIE
                     CDADIKRRAYHLRFMLLKSNKLIYKLIFPIITLFGVDITGRILKAIRGNI"
     gene            849..1379
                     /locus_tag="ACFM5C_000297"
     CDS             849..1379
                     /locus_tag="ACFM5C_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFC6068076.1"
                     /translation="MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVL
                     RGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNR
                     VLVGMGTTVLDDAVIEDEVMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFL
                     KYSAAHYVKLSKQYGM"
     gene            complement(1751..3346)
                     /locus_tag="ACFM5C_000298"
     CDS             complement(1751..3346)
                     /locus_tag="ACFM5C_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HFC6068077.1"
                     /translation="MSQEILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGT
                     VKGKKTGKFATSDWMDIEKQRGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVL
                     TAVDSALMVIDAAKGVEAQTIKLLNVCRLRNTPIVTFMNKYDREVRDSLELLDEVENI
                     LQIRCAPVTWPIGMGKNFKGVYHILNDEIYLFEAGGERLPHEFDIIKGIDNPELEQRF
                     PLEIQQLRDEIELVQAASNEFNLDEFLAGELTPVFFGSAINNFGIQEILNSLIDWAPA
                     PKPRDATVRMVKPDEPKFSGFIFKIQANMDPKHRDRIAFLRVCSGKFERGMKMKHLRI
                     NREIAASSVVTFMSHDRELVEEAYAGDIIGIPNHGNIQIGDSFSEGEQLAFTGIPFFA
                     PELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQVFKPMSGADLILGAVGVLQFEVVTSR
                     LANEYGVEAVFDSASIWSARWVSCDDKKKLAEFEKANAGNLAIDAGGNLAYLAPNRVN
                     LGLTQERWPDIVFHETREHSVKL"
     gene            complement(3453..3848)
                     /gene="hisI"
                     /locus_tag="ACFM5C_000299"
     CDS             complement(3453..3848)
                     /gene="hisI"
                     /locus_tag="ACFM5C_000299"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HFC6068078.1"
                     /translation="MDKNLLEAVKFDEKGLVCAIAQDAETKRVLMVAWMNAEALQKTV
                     ETGFAHYYSRSRQKQWMKGEESGHTQKVRELRLDCDGDAIVMLIAQNGGIACHTGRES
                     CFYKVWRGGAWETADAVLKDEKEIYGSTH"
     gene            complement(3879..4646)
                     /gene="hisF"
                     /locus_tag="ACFM5C_000300"
     CDS             complement(3879..4646)
                     /gene="hisF"
                     /locus_tag="ACFM5C_000300"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFC6068079.1"
                     /translation="MALAKRIIPCLDVKDGRVVKGVNFIGLRDAGDPVEAAKRYNGEG
                     ADELTFLDITASSDNRDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVS
                     INTAAVTRPDLIDEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEW
                     AIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGI
                     TEGKADAVLAAGVFHFGEIAIREAKRAMREAGIEVRL"
     gene            complement(4659..5396)
                     /gene="hisA"
                     /locus_tag="ACFM5C_000301"
     CDS             complement(4659..5396)
                     /gene="hisA"
                     /locus_tag="ACFM5C_000301"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFC6068080.1"
                     /translation="MLLIPAIDLKEGRCVRLRQGLMEEATVFSDSPAETALHWFKQGA
                     RRLHLVDLNGAFAGVPQNLPAIKDILAAVAKDIPVQLGGGIRDLKTIGQYLDLGLNDV
                     IIGTAAVKNPDFVREACKAFPGRIIVGLDAKDGMAAIDGWATVTGHHVIDLAKRFEDD
                     GVNSIIYTDIGRDGMMSGVNIDATVKLAQTVRIPVIASGGLTGLDDIRALCAAEKHGV
                     AGAITGRAIYEGSIDFAQAQQLADSLD"
     gene            complement(5429..6067)
                     /gene="hisH"
                     /locus_tag="ACFM5C_000302"
     CDS             complement(5429..6067)
                     /gene="hisH"
                     /locus_tag="ACFM5C_000302"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFC6068081.1"
                     /translation="MQIAIIDYGMGNLHSVLKSVWTAGQLAGKNTEIFLSGDPERVSR
                     ADKVIFPGQGAMPDCIAALTRGGLDEAVKDALKNKPFFGICVGAQLLFDHSEEGNTDG
                     LGWFGGKVRRFERDLRDRQGCRLKVPHMGWNTVRQTQNHPLFKDIPQNTRFYFVHSYY
                     FDPENPETILGESDYPSPFACIVGKDNVFATQFHTEKSHDAGLTMLKNFLNW"
     gene            complement(6198..7700)
                     /gene="pta"
                     /locus_tag="ACFM5C_000303"
     CDS             complement(6198..7700)
                     /gene="pta"
                     /locus_tag="ACFM5C_000303"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFC6068082.1"
                     /translation="MAKVLIVPVSAGLDASAAAQAFAKALDAQIFQAVDATAETLLAQ
                     GKSDDWFDALVGKVAALDAANLVIEGIAPDADKIYLAGKNVELALSLDAAAVFAVRSD
                     NADADELANRLNLAKQFFAAAPGVLEGFVVDGAAASVAEAAAEKTGLTFFGSSDALKD
                     VSVLAGREAKRLSPAQFRYNLIDFARQADKRIVLPEGAEPRTVQAAAICHEKGIARCV
                     LLAKREEVEAVAKERGISLPDSLEIIDPASLVEQYVGPMCELRKSKGLTPEDARKQLQ
                     DTVVLGTMMMAQNDVDGLVSGAVHTTANTIRPALQLIKTAPGASLVSSVFFMLLPNQV
                     LVFGDCAVNPNPTAQQLADIAIQSADSAKAFGIDPKVAMISYSTVNSGSGPDVDTVIE
                     ATKLAREKRPDLAIDGPLQYDAATVPGVGKSKAPGSPVAGQATVLVFPDLNTGNCTYK
                     AVQRSANVLSVGPLLQGLRKPVNDLSRGALVEDIVFTIALTAVQAKQMEG"
     gene            complement(7885..8943)
                     /gene="fbpC"
                     /locus_tag="ACFM5C_000304"
     CDS             complement(7885..8943)
                     /gene="fbpC"
                     /locus_tag="ACFM5C_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein FbpC"
                     /protein_id="HFC6068083.1"
                     /translation="MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIVGASGCGKT
                     TLLRCLAGFEQPDFGEISLSGRTIFSKNTNLPVRERRLGYVVQEGVLFPHLTVYRNTA
                     YGLGNGKGKTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELI
                     LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL
                     QTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCGLGRLPVQSGAPAGTRGTL
                     LIRPEQFSLHPHSAPTASIHAVVLKTTPKARHTEISLRVGQTVLTLNLPSAPTLSDGI
                     SAVLHLDGPALFFPGNTL"
     gene            complement(8964..10481)
                     /gene="fbpB"
                     /locus_tag="ACFM5C_000305"
     CDS             complement(8964..10481)
                     /gene="fbpB"
                     /locus_tag="ACFM5C_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease FbpB"
                     /protein_id="HFC6068084.1"
                     /translation="MSPKKIPIWLTGLILLIALPLTLPFLYVAMRSWQVGINRAVELL
                     FRPRMWDLLSNTLTMMAGVTLISIVLGIACALLFQRYRFFGKTFFQTAITLPLCIPAF
                     VSCFTWISLTFRVEGFWGTVMIMSLSSFPLAYLPVEAALKRISLSYEEVSLSLGKSRL
                     QTFFSAILPQLKPAIGSSVLLIALHMLVEFGAVSILNYPTFTTAIFQEYEMSYNNNTA
                     ALLSAVLMAVCGIVVFGESIFRGKAKIYHSGKGVARPYPVKTLKLPGQIGAIVFLSSL
                     LTLGIIIPFGVLIHWMMVGTSGTFALVSVFDAFIRSLSVSALGAILTILCALPLVWAS
                     VRYRNFLTVWIDRLPFLLHAVPGLVIALSLVYFSINYTPAVYQTFIVVILAYFMLYLP
                     MAQTTLRTSLEQLPKGMEQVGATLGRGHFFIFRTLVLPSILPGITAAFALVFLKLMKE
                     LTATLLLTTDDVHTLSTAVWEYTSDAQYAAATPYALMLVLFSGIPVFLLKKYAFK"
     gene            complement(10549..11544)
                     /gene="fbpA"
                     /locus_tag="ACFM5C_000306"
     CDS             complement(10549..11544)
                     /gene="fbpA"
                     /locus_tag="ACFM5C_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     FbpA"
                     /protein_id="HFC6068085.1"
                     /translation="MKTSIRYALLAAALTAATPALADITVYNGQHKEAAQAVADAFTR
                     ATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTIN
                     ETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYAPT
                     SGAFLEQVVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYY
                     WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLASKEG
                     QRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK"
     gene            complement(11795..12265)
                     /locus_tag="ACFM5C_000307"
     CDS             complement(11795..12265)
                     /locus_tag="ACFM5C_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4375 domain-containing protein"
                     /protein_id="HFC6068086.1"
                     /translation="MTDTDTQADRFEQMMWQAVDKLFEQHDGKLESMDGREQELVLIW
                     RTEADIGNGGILQFVCNWGFPAAEKTCSVLKKIGAIHSAMLIHRAADALRKEIRHLQS
                     EGKNLKEMWDITKHLDNKTASLPNSLDEQYWQDPDKLYLPGWQYYSGNPVQTLF"
     gene            complement(12322..13698)
                     /gene="argH"
                     /locus_tag="ACFM5C_000308"
     CDS             complement(12322..13698)
                     /gene="argH"
                     /locus_tag="ACFM5C_000308"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFC6068087.1"
                     /translation="MHDKTWSGRFNEPVSELVKQYTASIGFDRRLAEWDIQGSLAHAQ
                     MLKETGVLDEGDLADIRRGMAEILEEIRSGKIEWSSDLEDVHMNIERRLTDKIGDAGK
                     RLHTGRSRNDQVATDIRLWLRDQITVIQSLIQNLQTALLDLAEQNAETVMPGFTHLQV
                     AQPVSFGHHMLAYVEMLGRDNERMADCRRRVNRMPLGAAALAGTTYPIQREITAELLG
                     FEQICQNSLDAVSDRDFAVEFTAAASLVMVHLSRLSEELILWMSPRFGFIDIADRFCT
                     GSSIMPQKKNPDVPELVRGKSGRVIGHLIGLITLMKSQPLAYNKDNQEDKEPLFDTAD
                     TLIDTLRIYADMMRGVTVKPDNMRAAVMQGFATATDLADYLVKKGMPFRDAHEVVAQA
                     VRHADEAGVDLSELPLEVLQGFSDLIADDVYGVLTPEGSLNARNHLGGTAPEQVRFQV
                     KRWREMLA"
     gene            complement(13717..14586)
                     /gene="galU"
                     /locus_tag="ACFM5C_000309"
     CDS             complement(13717..14586)
                     /gene="galU"
                     /locus_tag="ACFM5C_000309"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6068088.1"
                     /translation="MKPIKKAVFPVAGMGTRFLPATKASPKEMLPIVDKPLIQYAVEE
                     AVEAGCTEMVFVTGRNKRSIEDHFDKAYELETELEMRHKDKLLEHVRNILPPNITCLY
                     IRQAEALGLGHAVLCARAAIGDEPFAVILADDLIDAPKGALKQMVEVYGRSGNSILGV
                     ETVEASQTGSYGIVETEQLKQFQRIIGIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     GLPRGAGNEIQLTDGIAKLLDHEFVLAHPFEGTRYDCGSKLGYLEATVAYGLKHPETG
                     EPFRRLLEKYRTE"
     gene            complement(14614..15213)
                     /gene="rdgB"
                     /locus_tag="ACFM5C_000310"
     CDS             complement(14614..15213)
                     /gene="rdgB"
                     /locus_tag="ACFM5C_000310"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFC6068089.1"
                     /translation="MSEKPEKIVLASGNAGKLEEFGNLFKPYSITVLPQSAFGIPECP
                     EPYPTFVENALAKARHAAEYSGLPALADDSGICAAALNGAPGIHSARYAGDNPKSDTA
                     NNLKLAAELAGKTDKSCCYVCVLVFVRHKDDPRPIIAEGVWHGQWNGVPAGENGFGYD
                     PYFYLPGHGKTAAELDSEVKNRESHRAQALADLIRKLAL"
     gene            complement(15206..15439)
                     /locus_tag="ACFM5C_000311"
     CDS             complement(15206..15439)
                     /locus_tag="ACFM5C_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO_0222 family membrane protein"
                     /protein_id="HFC6068090.1"
                     /translation="MNRRKIYLLSVALFTLAFMLLVLLGAYLLTVGSKAFAVASFLFA
                     FGALFGQIGSLALYLRHKSLRAAQSAAKENRYV"
     gene            complement(15547..16080)
                     /locus_tag="ACFM5C_000312"
     CDS             complement(15547..16080)
                     /locus_tag="ACFM5C_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFC6068091.1"
                     /translation="MADFNQILTPGDVDGGIINVVNEIPAGSNHKIEWNRKLAAFQLD
                     RVEPAIFAKPTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGE
                     VDDKIVCVPADDRNNGNAYKTLSDLPQQLIKQIEFHFNHYKDLKKAGTTKVESWGDAE
                     EAKKVIKESIERWNKQA"
     gene            complement(16182..16640)
                     /gene="nudB"
                     /locus_tag="ACFM5C_000313"
     CDS             complement(16182..16640)
                     /gene="nudB"
                     /locus_tag="ACFM5C_000313"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008828 - dATP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019177 - dihydroneopterin triphosphate
                     pyrophosphohydrolase activity [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HFC6068092.1"
                     /translation="MPMAKPLKYPVSALVVLYSGDGGILLIERTHPEGFWQSVTGSLE
                     PGETVAQTARREVWEETGILLADGQLQDWHDSTVYEIYHHWRHRYPKGVFENREHLFS
                     AEIPRDTPIALQPEEHVSYGWFGLEEAAEKVFSPSNRRAILELGRFLGKR"
     gene            16851..16927
                     /locus_tag="ACFM5C_000314"
     tRNA            16851..16927
                     /locus_tag="ACFM5C_000314"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16885..16887,aa:Pro,seq:ggg)
     gene            17085..18911
                     /gene="mafB"
                     /locus_tag="ACFM5C_000315"
     CDS             17085..18911
                     /gene="mafB"
                     /locus_tag="ACFM5C_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
                     /protein_id="HFC6068093.1"
                     /translation="MGISRKISLILSILAVCLPMHAHASDLANDSFIRQVLDRQHFEP
                     DGKYHLFGSRGELAERSGHIGLGNIQSHQLGNLFIQQAAIKGNIGYIVRFSDHGHEVH
                     SPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIY
                     SYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGAMLTQGVGDGFKRATRYSPELDRSG
                     NAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAVMHGLGLLSTENKMARIN
                     DLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFTAVIPVKGIGAVRGKYGLGGI
                     TAHPVKRSQMGAIALPKGKSAVSNNFADAAYAKYPSPYHSRNIRSNLEQRYGKENITS
                     STVPPSNGKNVKLADQRHPKTGVPFDGKGFPNFEKHVKYDTKLDIQELSGGGIPKAKP
                     VFDAKPRWEVDRKLNKLTTREQVEKNVQEIRNGNKNSNFSQHAQLEREINKLKSADEI
                     NFADGMGKFTDSMNDKAFSRLVKSVKENGFTNPVVEYVEINGKAYIVRGNNRVFAAEY
                     LGRIHELKFKKVDFPVPNTSWKNPTDVLNESGNVKRPRYRSK"
     gene            18914..19378
                     /locus_tag="ACFM5C_000316"
     CDS             18914..19378
                     /locus_tag="ACFM5C_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068094.1"
                     /translation="MAIWNYRYYLIPSAAIRNKFNANKDIILDEYRSNGFQNFNENKS
                     FENYFIDNDVILLSIINEAKKQLKLKESWDKDAIMFCDNFGNSLTVWPDDIECELDLR
                     FDYTKFIQKTIDWAIKYNCLLVIEKTGNVVSPNINNLMYEIKAYLESKPWPI"
     gene            19603..19749
                     /locus_tag="ACFM5C_000317"
     CDS             19603..19749
                     /locus_tag="ACFM5C_000317"
                     /inference="COORDINATES: protein motif:HMM:NF012755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068095.1"
                     /translation="MWYEANIGLINTMSRSNQAGTRLLYSNYGLLYITTDHYISATRF
                     VAWK"
     gene            19761..20048
                     /locus_tag="ACFM5C_000318"
     CDS             19761..20048
                     /locus_tag="ACFM5C_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HFC6068096.1"
                     /translation="MQLEIIGSKIYTEQDFHNQISKIFSIQDYYGNNLDALWDLLSTN
                     VERPITLVWKDAMFSKNQLENIFIEIVNVLERVKKQDEDYGFEEKFNYILE"
     gene            20562..21800
                     /locus_tag="ACFM5C_000319"
     CDS             20562..21800
                     /locus_tag="ACFM5C_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EndoU domain-containing protein"
                     /protein_id="HFC6068097.1"
                     /translation="MIASLTGAAVGGTPVDAQTGGAVGQNAVENNLYLTSEALKKDKQ
                     TARKIYSVIKEQVKHECSSTGRITECRQNIGRIIEFTQDKRFDSRFKDLKKESLYYLN
                     KHPDLVASYLKAEYEKLDREDKSILHRYISPGAEIVSGSLGVVLSGVAGGGSCAETFG
                     LGCAAALVGVTSSYDHVITGTKNFGKKASEQRPTIAVQALKQLGLSEQAAEYVQFSID
                     LFSVGKSGGGIPKAKPVFDAKPRWEVDRKLNKLTTREQVEKNVQETRRRSQSSQFKAH
                     AQREWENKTGLDFNHFIGGDINKKGTVTGGHSLTRGDVRVIQQTSAPDKHGVYQATVE
                     IKKPDGSWEVKTKKGGKVMTKHTMFPKDWDEARIRAEVTSAWESRIMLKDNKWQGTSK
                     SGIKIEGFTEPNRTAYPIYE"
     gene            21831..22250
                     /locus_tag="ACFM5C_000320"
     CDS             21831..22250
                     /locus_tag="ACFM5C_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068098.1"
                     /translation="MKRIKCFCDKFPSGDTFRMCIILDDYDNRVDYYVGIYDYITSTL
                     MSDIYYRSTIDEHFKIIELIENNPNEIYDDGGGQQFCLEFHHDKVIFYHNEFDEEDGY
                     PVLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
     gene            22287..23261
                     /gene="mafB"
                     /locus_tag="ACFM5C_000321"
                     /pseudo
     CDS             22287..23261
                     /gene="mafB"
                     /locus_tag="ACFM5C_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258126.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
     gene            23272..23733
                     /locus_tag="ACFM5C_000322"
     CDS             23272..23733
                     /locus_tag="ACFM5C_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068099.1"
                     /translation="MNLETAENIQCEFEYLALDGYFPMHFASHGQGNKDWQFAVEFIY
                     RLLICQLATLEPINFETKNDILDFCHNLAKQSPFNNDNEVWYQGEIVLTKKGIDLIKE
                     YIPEAFEEWNGKKFELNIPFIKTLKNIFVNYEVAWDENNPLFPIISLNLGT"
     gene            23720..24007
                     /locus_tag="ACFM5C_000323"
                     /pseudo
     CDS             23720..24007
                     /locus_tag="ACFM5C_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229180.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EndoU domain-containing protein"
     gene            24034..24453
                     /gene="mafI"
                     /locus_tag="ACFM5C_000324"
     CDS             24034..24453
                     /gene="mafI"
                     /locus_tag="ACFM5C_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein MafI"
                     /protein_id="HFC6068100.1"
                     /translation="MYKIKCFYDQFSSGELFNYCQFLDNSSNQKINTRGTVYQYIIYV
                     LTGDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGFCWDISAEKVVFYHNEFDEEDGW
                     PDLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
     gene            24543..24614
                     /locus_tag="ACFM5C_000325"
                     /pseudo
     CDS             24543..24614
                     /locus_tag="ACFM5C_000325"
                     /inference="COORDINATES: protein motif:HMM:NF026862.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin type 17 domain-containing
                     protein"
     gene            24611..24853
                     /gene="imm31"
                     /locus_tag="ACFM5C_000326"
     CDS             24611..24853
                     /gene="imm31"
                     /locus_tag="ACFM5C_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Imm31 family immunity protein"
                     /protein_id="HFC6068101.1"
                     /translation="MTNLKLDFYSEVIIKDSCPNDLLENGETIKGKKGVVLGISEEDG
                     IIYGYTILLFDIKYCIYIDKKYIIPTGKKFSRDDFY"
     gene            24931..25176
                     /locus_tag="ACFM5C_000327"
     CDS             24931..25176
                     /locus_tag="ACFM5C_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6068102.1"
                     /translation="MKDSTGQMRLATKDLAEAIKRGEVRSSAFTTKQLKAIEKGESKI
                     PDYTWHHHQDTGRMQLINEDLHHDTGHIGWRAMSKGK"
BASE COUNT         6230 a         5580 c         7042 g         6324 t
ORIGIN      
        1 cagataccga acaccaaaca tcaaatatat atatcaggat aaccaaggga cggcagaagc
       61 taggaatacc ggaataaaaa attcaaacgg aaaatatata gtctttattg attcggatga
      121 ttttattaat tgtcaggtct tgctggattt tcttagtaaa gatgatattg atatgccgga
      181 tgtggttttt ttaaatgcgg ttaaatatga taagggaagt gtttcacatt ttggcgaaga
      241 ttatcagcct gaaaaaatac tcaagcaatc caaagtcgaa gttttgaaag gattatgccg
      301 atttagaaaa tttccgggtt cggcgtgtaa taagattata aaaagggaat tgattatcaa
      361 agaaaaactg ttttttgaaa aagaggttta tgccgaagat atcgaatggt caatgagatt
      421 atttaatgcg gcaacaactt tttcttattt ggacggttgt tattactatt atcggcaggg
      481 aagaaaagat tctaaaacag gaactgtttc ggaaaaaagt ataaagtcat tattatatat
      541 tttggagaaa aatgcggaaa tggaatttga tagggatata tcaagttatc tttattcttt
      601 tctttcctac gaatatctcg ttttgctttt tatcatgacg agtaaaaata tagagtgtga
      661 tgctgatata aaaagaaggg cgtatcattt aaggtttatg ctgttaaagt ccaataaatt
      721 gatatataag ctgatattcc cgataatcac attattcggg gttgatatta caggcaggat
      781 tttaaaagca atcagaggga atatttaata aatcctttaa cactatacat cttaccgaag
      841 gaggaaaaat gaacgcaatc cgaactttcc aaaaccgcac gcccgaaatc cacgaaagct
      901 gtatgataga cgaagcgtgc gtcgtcatcg gcgaagtgtc gcttgccgaa gacgtttccg
      961 tgtggccgtg cgccgtgttg cgcggcgatg tgaacagcat caccgtcggc gcgcgcagca
     1021 atatacagga cggcagcgtc ctgcacgttt cccacaaaac cgccgccaaa cccgaaggat
     1081 cgccgctggt tatcggcgaa gacgttaccg tggggcacaa agtgatgctg cacggctgcc
     1141 gaatcggcaa ccgcgtcctg gtcggcatgg ggacgacggt tctggacgat gccgtgattg
     1201 aggacgaagt gatgatcggc gcgggcagcc tcgtgcctcc gcgcaaacgt ttggagggcg
     1261 gctatcttta tgtcggttcg ccggtcagac aagtgcgcgt gttgaccgat gaggaaaaag
     1321 cctttttgaa gtattccgcc gcgcattatg tgaagctgtc gaaacagtac gggatgtgaa
     1381 atcacatcgg cgttcttgcg tcagccctaa attcatgcgg acgggatgcc cgataacggt
     1441 atccgatgcg ccttgatttt gatcggtgca tttgagttgc aggcaaaaat gccgtctgaa
     1501 gccctttttt cgggttcaga cggcatttta ttgccgattg ctttttaaag tttgaccgaa
     1561 tgctcgcgcg tttcgtggaa cacgatgtcc ggccagcgtt cttgcgtcag ccctaaattc
     1621 atgaggacgg gatgcccgat aacggtatcc gatgcgtctt gattttgatc ggtgcatttg
     1681 agttgcaggc aaaaatgccg tctgaaagcc ttttttcggg ttcagacggc attttatcgc
     1741 cgattgcttt ttacagttta accgaatgtt cgcgcgtttc gtggaacacg atgtccggcc
     1801 aacgttcttg cgtcaacccc aaattcacgc ggttgggggc gaggtaggcg aggttgccgc
     1861 ccgcgtcgat ggcgaggttg cccgcgttgg ctttttcaaa ctccgccagt tttttcttgt
     1921 cgtcgcacga tacccagcgc gccgaccaga tggatgcgct gtcgaacacg gcttctacgc
     1981 cgtattcgtt ggccagccgc gaggtaacga cttcaaactg caaaacgccg accgcgccca
     2041 aaatcaaatc cgcgccgctc atcggtttga atacctgtac cgcgccttct tcgccaagct
     2101 gttgcaaacc tttttgcagt tgcttgattt tcagcgggtt tttgatgcgg acgctgcgga
     2161 acagttcggg cgcaaagaat gggatgccgg taaacgccag ttgttcgcct tcggagaagc
     2221 tgtcgccgat ttggatgttg ccgtggttcg ggatgccgat gatgtcgccg gcgtaggctt
     2281 cttccaccag ctcgcggtcg tgcgacataa aggttaccac gctggaggca gcgatttcgc
     2341 ggttgatgcg caggtgtttc atcttcatac cgcgctcgaa tttgccggag cagacgcgca
     2401 agaaggcgat gcggtcgcgg tgtttcggat ccatattggc ttggatttta aagataaatc
     2461 cggagaattt cggctcgtcc ggcttgacca tacgtacggt cgcgtcgcgc ggtttcggcg
     2521 cgggcgccca gtcaatcaat gaattgagga tttcctgaat accgaagttg ttaatcgcag
     2581 agccgaagaa tacgggcgtg agttcgccgg cgaggaattc gtcgagatta aactcgttgg
     2641 aagccgcctg caccaattcg atttcgtcgc gcaactgctg gatttccaat ggaaagcgtt
     2701 gttccaattc gggattgtcg atgcctttga tgatgtcgaa ctcgtgcggc agacgttcgc
     2761 caccggcttc aaagagatag atttcgtcgt tcaggatgtg gtacacgcct ttgaagtttt
     2821 tgcccatgcc gatcggccag gttacgggcg cgcagcggat ttgcaggatg ttttccactt
     2881 cgtccagcaa ctccaaagaa tcgcgcactt cgcggtcgta tttgttcatg aacgtgacaa
     2941 tcggcgtatt gcgcaggcgg cagacgttca agagtttgat ggtttgcgct tccacacctt
     3001 ttgccgcgtc gatgaccatc aaggcgctgt ccacggcggt cagaacgcgg taggtgtctt
     3061 cggagaagtc ttggtgtccc ggcgtgtcca agaggttgac ggtgtggtct ttgtagtcga
     3121 actgcatcac gcttgatgcc acggaaatgc cgcgctgctt ctcgatgtcc atccagtcgg
     3181 aggtggcgaa tttgccggtt tttttgcctt ttaccgtacc cgcgctctga atcgcgcccg
     3241 aaaacagcaa cagcttttcg gtcagcgtgg ttttacccgc gtcggggtgg gagatgatgg
     3301 caaacgtgcg gcggcggcgc acttggtcga ggatttcttg ggacatggtt ttctttgcaa
     3361 aaaggttcag gccgcttttc agacggcccg gacagtgttt gagacggcga aattgtacaa
     3421 aaaaatgcct gataattcaa tgttggaggc ggtcagtgcg tgctgccgta aatctctttt
     3481 tcgtctttca ggacggcatc ggcggtttcc cacgcgccgc cgcgccagac tttgtaaaag
     3541 cagctttctc gcccggtgtg gcaggcgatg ccgccgtttt gggcgatgag catcacaatg
     3601 gcgtcgccgt cgcagtcgag gcgcagttcg cggacttttt gcgtgtgtcc cgactcttcg
     3661 cccttcatcc attgtttttg gcgcgaacgg ctgtaatagt gggcaaagcc ggtttcgacg
     3721 gttttttgca gggcttcggc gttcatccac gctaccatta aaacacgttt ggtttcggca
     3781 tcttgggcga tggcgcaaac caaacctttt tcgtcaaatt tgacggcttc aagcaggttt
     3841 ttatccatat ttcctttcag acggcatagt cggggcggtc agaggcgcac ttcgatgccg
     3901 gcttcgcgca tagcgcgttt ggcttcgcgg atggcgattt ccccgaaatg gaaaacgccg
     3961 gcggcaagta cggcatcggc tttgccttcg gttatgcctt caatcaggtg ccggacattg
     4021 ccgaccccgc cggaggcgat gacggggatg tcgacggctt cggcaacggc gcgggtcagc
     4081 ggcaggttga aaccctgttt cgtaccgtcc ctgtccatac cggtaagcag gatttcgccc
     4141 gcgccgcgtt tttgcatttc gatcgcccat tccaccgcat ccaaaccggt cggattgcgc
     4201 ccgccgtggg taaagatttc ccagcgtgtg ttttcggggt tgacggcttt ggcatcgacg
     4261 gcggcgacga tggcttgcga accgaaaaat ccggcggctt cgtcaatcag gtcgggacgg
     4321 gtaacggcgg cggtgttgat gctgactttg tccgcgccgg cattgagcag gcggcggatg
     4381 tcggcaacgg tgcgtacgcc gccgccgacg gtcagcggga tgaagacttg tccggcaact
     4441 tcttcgatga tgtgcaggat ggtatcccgg ttgtcggatg aggcggtgat gtcgaggaag
     4501 gtcaattcgt ccgcgccttc gccgttgtag cgtttggcgg cttcgacggg gtcgcccgcg
     4561 tcgcgcaaac cgatgaagtt cacgcctttg acgacgcgcc cgtcttttac gtcgagacag
     4621 gggatgatgc gttttgccag tgccataatc ggatgccttt agtcgaggga atctgccagt
     4681 tgctgcgctt gggcaaaatc gatgctgccc tcgtaaatcg cgcggccggt aatcgcgcct
     4741 gctacgccat gtttttcggc ggcacacagg gcgcggatgt cgtccaagcc ggtcagtccg
     4801 ccggaggcga tgacgggaat gcggacggtt tgggcgagtt tgaccgtcgc gtcgatgttc
     4861 acgccgctca tcataccgtc gcgcccgatg tcggtgtaga tgatgctgtt gacgccgtcg
     4921 tcttcaaagc gttttgccaa atcaattaca tgatgcccgg ttacggttgc ccagccgtcg
     4981 atggcggcca taccgtcttt ggcatccagc ccgacaataa tcctgccggg gaaggctttg
     5041 cacgcctcgc gcacgaagtc ggggtttttg accgccgccg tgccgataat cacgtcgttc
     5101 agacccaaat ccaaatattg tccgatggtt ttcaaatcgc gtatgccgcc gccgagctgt
     5161 acggggatgt ctttggcgac ggcggcaagg atgtctttga tggcgggcag gttttgcgga
     5221 acgccggcaa acgcgccgtt caaatctacc agatgcaggc ggcgcgcgcc ttgtttgaac
     5281 cagtgcagtg cggtttcggc gggcgaatcg gaaaagacgg tcgcctcttc catcagccct
     5341 tgtctcaggc ggacgcagcg tccttctttc aaatcgatgg cgggtatcag cagcataatt
     5401 tttctccttg tgcggggccg tgtccggctt accagtttaa aaagtttttc aacatcgtca
     5461 gcccggcatc gtggcttttt tcggtgtgaa attgcgtggc gaatacgttg tctttgccga
     5521 cgatgcaggc aaacggggac gggtagtcgc tttcgcccaa tatggtttcg ggattttcgg
     5581 ggtcgaaata gtagctgtgg acgaagtaaa aacgcgtgtt ttggggaata tctttaaaca
     5641 gcgggtggtt ttgggtttgg cgcacggtgt tccagcccat atgcgggact ttcagacggc
     5701 atccctgccg gtcgcggagg tcgcgctcaa agcgtctgac tttgccgccg aaccagccca
     5761 agccgtcggt gtttccttct tcactgtggt cgaataaaag ttgcgcgccg acgcagattc
     5821 cgaaaaaggg tttgtttttt aaggcatctt tgactgcctc gtccaagccg ccgcgcgtca
     5881 gtgccgcaat acagtcgggc atcgcgccct gcccgggaaa aatgactttg tcggcgcggg
     5941 acacgcgttc ggggtcgccg cttaaaaaga tttcggtatt ttttccggca agctgccccg
     6001 ccgtccagac ggatttcaat acggaatgca ggttgcccat accgtaatcg ataatggcga
     6061 tttgcatggc ttcctcctct ttttttgcaa tatggctgcg attttaacaa acaaatgtgc
     6121 cgtgctgata aaaatgccgt ctgaaaacgg gagtctgtct tcagacggca tagggtttaa
     6181 acccggaaag ccgtttgtca gccttccatt tgttttgcct gaacggcagt tagggcgatg
     6241 gtgaacacga tgtcttccac cagcgcgccg cgcgacaggt cgttgaccgg tttgcgcagg
     6301 ccttgcagca gcgggccgac gcttaagacg ttggcactgc gttggacggc tttataggtg
     6361 cagttgccgg tgttcaggtc ggggaagacc aaaacggttg cctgtcctgc caccgggctg
     6421 cccggagctt tggatttgcc cacgcccggc acggttgccg catcatattg cagcgggccg
     6481 tcgatggcga ggtcggggcg tttttcccgg gcaagtttgg ttgcttcgat gacggtatcg
     6541 acatcggggc cgctgccgga gttgacggtg gagtaggaaa tcatcgccac tttcgggtcg
     6601 atgccgaagg cttttgcgga atcggcagac tggatggcga tgtcggcaag ctgttgcgcg
     6661 gtcgggttcg gattaaccgc gcagtcgccg aagacgagga cttggttggg cagcagcata
     6721 aagaatacgc tggacacgag gcttgcgccc ggtgcggttt taatcagttg caaagcgggg
     6781 cggatggtgt tggcggtggt gtgaaccgca ccggatacca aaccgtccac atcattttgc
     6841 gccatcatca tcgtaccgag taccacggtg tcttgcagtt gcttgcgcgc gtcttcgggt
     6901 gtcaggcctt tggatttgcg cagttcgcac atcggtccga cgtattgttc gaccaatgag
     6961 gcgggatcga tgatttccaa agagtcgggc aggctgatgc cgcgttcttt ggcaacggct
     7021 tcgacttctt cgcgtttggc aagcaggacg cagcgggcaa tgcctttttc gtggcagatg
     7081 gcggcggctt ggacggtgcg gggttctgcg ccctcaggca ggacgatgcg tttgtcggct
     7141 tggcgggcga agtcgatcag gttgtagcgg aattgcgccg gcgacaggcg ttttgcttcg
     7201 cggcctgcca atacggatac gtctttcagc gcgtcgctcg aaccgaagaa ggtcaggccg
     7261 gttttttcgg ctgccgcttc ggcaacggag gctgccgcgc cgtccacgac aaaaccttcc
     7321 aatacgcccg gcgcggcggc gaagaactgt ttggcaaggt tcagccgatt tgccagttcg
     7381 tcggcatcgg cgttgtcgga acggacggcg aagacggctg ccgcgtcaag ggacaatgcc
     7441 agttcgacgt ttttgcctgc gaggtagatt ttgtcggcat cgggcgcgat gccttcgatg
     7501 acgaggttgg cggcatcgag tgcggcaact ttgccgacca gtgcgtcgaa ccagtcgtcg
     7561 cttttgcctt gcgcgagcag ggtttcggcg gttgcgtcaa cggcttggaa aatttgtgcg
     7621 tccagtgctt ttgcaaaggc ttgtgcggcg gcggaggcgt ccagtccggc agatacgggt
     7681 acgatgagta cttttgccat gatatatcct ttcgtatgct gcggtgtgcg gcatatgtgg
     7741 ttggaagggg cggcatatag gcagaaacgg ctgcctgcgt gccgtgcgtg ccgtgtttgg
     7801 cttgaggcgc gcaggttgaa tatagcaaac aaattctgtt tccaacaaga taaatatccg
     7861 caggcttgtg gatgctgccg cctttcagag ggtatttccg gggaagaaca gggcgggacc
     7921 gtccaaatgg aggacggcgg aaatgccgtc tgacagggtg ggggcggaag ggaggttgag
     7981 cgtgaggacg gtttgtccga cccggaggct gatttcggta tgccgcgctt tgggcgtggt
     8041 tttgagaacc acggcgtgaa tggaggcggt gggtgcggaa tgggggtgaa ggctgaactg
     8101 ttccggacgg atgagcagtg tgccgcgtgt gcctgcgggt gcgccgcttt gaacgggcag
     8161 gcggcccaat ccgcaatcgg cggtgccgtc ggcgttgagc gcggcgggga acacgatgcc
     8221 ttcgccgata aacagggcgg catcaaggtc ggcaggttgt cggtacaatt cgtgagggct
     8281 tgcagtttgg aggatgcgcc cctgtttcat cacggcaatc cggtcggcgt attgcagggc
     8341 ttcttcgcgg tcgtggctga cgaaaacggc agatttgccg ttggcgcgca gggcggcaat
     8401 catgtcttcg cgaatctggc ggcgcaactg ttcgtccagc gcgctgaagg gttcgtccaa
     8461 caaaatcagt tcgggatcgg gtgcgagggc gcgggcgagg gcgacgcgct gttgctgtcc
     8521 gcccgaaagt tcgtgcggat agcgtccggc aagttcggaa atgccggtca attccaacat
     8581 agcttcgatg cgctgccgct cttgcgccgt cttgcctttg ccgttgccca gcccgtaggc
     8641 ggtgttgcgg taaacggtca ggtgggggaa cagcacacct tcctgtacga cataacccaa
     8701 acggcgttcg cggacgggga ggttggtatt tttcgagaag atggttctgc cggaaagcga
     8761 aatttcgcca aaatcgggtt gttcaaaacc ggcaaggcag cgtaaaaggg tggttttgcc
     8821 gcagccggac gcgccgacga taaagaggat ttcgcccggg tcgaggctga gcgaaatgtc
     8881 gtttaaaact ggggtgtttt gaaaactttt ggacaggtgt ccgatgtgca gggcggcggt
     8941 catggcggta cttcctcaag ctgttatttg aaggcgtatt tcttcagcag gaatacgggg
     9001 atgccggaaa ataataccag catcagcgcg taaggggtgg cggcggcgta ttgtgcgtcc
     9061 gatgtgtatt cccaaacggc ggtggagagt gtgtggacat cgtcggtggt cagcagcagg
     9121 gtggcggtca gctctttcat cagtttgagg aagacgagtg cgaatgcggc ggtaatgccg
     9181 ggcaggatgg acggcagtac caacgtcctg aaaataaaga agtgtccgcg ccccaatgtt
     9241 gcgccgacct gttccatccc ttttgggagt tgttccaagg aagtcctcag ggtggtttgc
     9301 gccatcggca ggtaaagcat gaaataggca aggatgacga cgataaaggt ttggtaaacg
     9361 gcaggggtgt agttgatgct gaaataaacc aaggataggg cgataaccaa accggggacg
     9421 gcgtgcagta aaaacggcag cctgtctatc caaacggtta aaaaattgcg atagcgaacc
     9481 gatgcccaaa caaggggcaa ggcacataat atagtcaaaa tcgcacctaa agccgatacg
     9541 cttaaggaac ggataaaggc atcaaatacg gatacgagcg cgaatgtgcc ggaagtgccg
     9601 accatcatcc aatgtatcaa tacgccaaag gggataataa tgcccaaagt caacaagctg
     9661 cttaaaaaaa caatcgcgcc aatctgaccg ggcagtttga gggttttgac gggataagga
     9721 cgggcaacgc ctttgccgct gtggtaaatc ttggctttgc cgcgaaatat gctttctcca
     9781 aatacgacga tgccgcacac cgccattaaa acagcggaaa gcagggcggc ggtattgttg
     9841 ttgtaggaca tttcgtattc ttggaaaatg gcggtggtaa aagtggggta gttcaaaatg
     9901 gataccgcgc caaattcgac caacatatgc agggcaatca gtaacacgct gctgccgatg
     9961 gcgggtttga gctgggggag gatggcggaa aaaaaggttt gcaggcggct tttgcccaag
    10021 gacaggctga cttcttcgta agacaggctg atgcgtttga gtgccgcctc gacgggcagg
    10081 taggcgagcg ggaacgagga caggctcata atcatcactg tcccccaaaa gccttcgaca
    10141 cggaaggtca ggctgatcca ggtgaaacag ctgacaaatg cggggatgca caaaggcagg
    10201 gtgattgccg tctgaaaaaa ggttttgccg aagaagcggt aacgttggaa caaaagggcg
    10261 caggcaatgc ccaaaacaat ggaaatcagg gtaacgcccg ccatcatcgt caaggtgttg
    10321 gagagcaaat cccacatacg cgggcggaac aacagttcga cggcgcggtt gatgccgacc
    10381 tgccacgaac gcatagcgac atataaaaaa ggcagggtaa gcggtagggc aatcagtagg
    10441 atgaggccgg taagccaaat gggtattttt ttaggagaca tagtgttttt tatcggcaaa
    10501 acgggcggac agtataaatg tccacccgtt tgacaatccg aaaacggctt atttcatacc
    10561 ggcttgctca agcagccggg tggcgtgttc tttttcggaa acagtggtgg cggacacttg
    10621 gggtgcttcc aacttggcga tgggttccaa attgaaggtg gataccacgt gcggattcaa
    10681 aggatactcg gcacggacgg cggtcagggc gcgctgtcct tccttgctgg cgaggaaggc
    10741 gacgaatttt ttcgcctcat ccttgttttg ggaggatttt aacacggctg cgccggaata
    10801 ggtaacgagt gcgccgggat ctctgtggcg gacgaaattc aggcgggtgt ggacattttg
    10861 tacgcctttt tcacgcgcaa aagcgtgcca gtagtagttg ttgatgaggg cggcatcgat
    10921 ttcgccgttt tcaaccgctt gaagggcgac ggagttttta gcgtaaggct tgccgtattc
    10981 tttcagacct ttgagccatt tcaatgcggc cgcttcgcct ttcagtttga cgatggcgac
    11041 aacctgttcc aagaacgcgc cggaagtggg ggcgtaaccg atgcggtttt tccatttcgg
    11101 cgtggcgtaa ttcaggacgg atttttccaa atctttttca gacagtttgc gggtgtcgta
    11161 aacgacgacg cgcgaacgtc cgctcagtgc cacccagtct tttttggcgg caaccggcac
    11221 gcccttgccg cgtgtttcgt tgatggtgga ggcgggcagg ggctctagga ggttggcggc
    11281 ggaaagggtg gcgagtgccg ggatttgttc ggaatagaat acgtcggcgg ggcttcggct
    11341 gccttcttct ttgatttgac cggcaagctg gtcgcctttg gcgctgttga gtttgacttt
    11401 gatgccggta gcccgggtaa aggcatctgc aacggcttgt gctgcttctt tgtgttggcc
    11461 gttgtacacg gtaatgtctg ccagcgcggg ggttgcggcg gtcagggctg cggcaagcag
    11521 tgcgtatcgg atagatgttt tcatatcgat tttctcctaa tgaatgagag tgtacacctt
    11581 gttaaaacat aacggtgtgt agtgtattcc ttcttcttta taaatgcaaa taattatttt
    11641 ttaaatttgt tattatccga tccggttatg gtttgttctg acttgtattt tttccgtgca
    11701 tcgcgcccgt aaggcggaag cggcgggcaa tgcgtggcgg aatgtgggta aaggcggcat
    11761 tttgatttgt cggaatgctt gagaacccct ctctttaaaa cagcgtctga acagggttgc
    11821 cggaatagta ttgccatccc ggcagataca gtttgtcggg gtcttgccaa tattgttcat
    11881 ccagactgtt cggcagtgag gcggttttgt tgtcgagatg ttttgttata tcccacattt
    11941 ctttcaggtt tttaccttcc gattggaggt ggcggatttc ttttctcaat gcgtctgccg
    12001 cccgatggat cagcattgcg ctgtgtatcg cgccgatttt tttcagaacg gaacaagtct
    12061 tttcggcggc gggaaaaccc caattgcaga caaattgcag tatgccgccg ttaccgatat
    12121 cggcttctgt ccgccaaatc aaaaccagct cctgttcccg cccgtccatg ctttcgagtt
    12181 tgccgtcatg ctgttcaaaa agtttgtcca ccgcctgcca catcatctgt tcgaagcggt
    12241 cggcttgggt atccgtatcg gtcatcgtgt tcttgccttt taaaaatgcc gtctgaacat
    12301 ttcttcagac ggcatcgggg gttaagccaa catttcccgc cagcgtttga cttggaaacg
    12361 gacttgttca ggcgcggtgc cgcccaagtg gttgcgcgcg tttaagctgc cttcgggtgt
    12421 cagcacgccg taaacgtcgt cggcaatcaa atcgctgaaa ccttgtaaga cttcgagcgg
    12481 cagttcgctc aaatcgacgc cagcttcatc ggcgtggcgc acggcttggg cgacgacttc
    12541 gtgggcatcg cggaagggca tacctttttt aaccagataa tccgccaagt cggtggcggt
    12601 ggcaaaaccc tgcatcacgg cggcgcgcat attgtcgggt ttgacggtta cgccgcgcat
    12661 catatcggcg taaatccgca gcgtgtcgat aagcgtgtcg gcggtgtcaa acaaaggttc
    12721 tttgtcttcc tgattgtctt tgttgtacgc caagggctgc gatttcatca gggtaatcaa
    12781 gccgataagg tgtccgatga ctcggccgga tttgccgcgc acgagttcgg gcacgtcggg
    12841 gtttttcttc tgcggcatga tggacgaacc tgtgcagaaa cggtcggcga tgtcgataaa
    12901 gccgaaacgc ggactcatcc acaaaatcaa ttcttcagac aggcggctca ggtgaaccat
    12961 aaccagcgag gcggcggcgg tgaactcgac ggcaaaatcg cggtcggata cggcatcgag
    13021 cgagttttgg cagatttgtt caaagcccaa tagctcggcg gtaatttcgc gctgaatcgg
    13081 gtaggtcgtc ccggcaaggg cggctgcgcc gagcggcata cggttgacgc ggcggcggca
    13141 gtccgccatc cgttcgttat cgcggccgag catttcgacg taggcgagca tatggtgtcc
    13201 gaagctgacg ggctgggcga cttgcaggtg ggtaaagccg ggcataacgg tttcggcgtt
    13261 ttgttccgcc aaatccagca atgccgtctg aaggttttga atcaggcttt ggataacggt
    13321 aatctggtca cgcagccaca ggcggatgtc ggtggcgact tggtcgttgc ggctgcggcc
    13381 ggtgtgcagg cgtttgcccg cgtcgccgat tttgtcggtc aggcggcgtt cgatgttcat
    13441 gtggacatct tccaaatcgg acgaccattc gattttgccg ctgcggattt cttcgaggat
    13501 ttccgccatg ccccgacgga tgtccgccaa atcgccttcg tccaacacgc cggtttcttt
    13561 caacatttgc gcgtgtgcca gcgagccttg aatgtcccat tcggcaagcc gtcggtcgaa
    13621 accgatggag gcggtgtatt gtttgacgag ttcggaaacg ggttcgttga aacgtccgga
    13681 ccaggttttg tcgtgcataa ggattccttg atggggttat tcggtgcggt atttttccaa
    13741 aaggcggcgg aagggttcgc cggtttcggg gtgtttcagg ccgtaggcga cggtggcttc
    13801 gaggtagccc agtttgctgc cgcagtcgta gcgcgtgcct tcaaaggggt gcgccaggac
    13861 aaattcgtga tcgagcagct tggcgatgcc gtctgtaagc tggatttcgt tgcccgcgcc
    13921 gcgcggcagt ccggtcagta agtcgaaaat gcgcggggta aggatgtagc gtccgacgac
    13981 ggcaaggttg gagggcgcgt cttcgggctt gggtttttcg acaatgccga taatgcgttg
    14041 gaactgtttg agctgttcgg tttcgacgat gccgtatgag ccggtttgcg atgcttcaac
    14101 ggtttctacg cccaaaatgc tgttgccgct gcgcccgtac acttcgacca tttgtttgag
    14161 cgcgcctttg ggggcatcaa tcaggtcgtc ggcaaggata acggcaaagg gttcgtctcc
    14221 gatggcggcg cgggcgcaca agacggcgtg tcccaagccc agtgcttccg cctgacggat
    14281 gtagaggcag gtaatgttcg gcggcaggat gttgcggacg tgttccaaca atttgtcttt
    14341 atggcgcatt tccaactcgg tttcgagttc gtatgccttg tcgaaatggt cttcgatgct
    14401 gcgtttgttg cgtccggtaa caaacaccat ttccgtgcag ccggcttcca cggcttcttc
    14461 tacggcgtat tggatcagcg gcttgtcgac gatgggcagc atttctttcg ggcttgcctt
    14521 ggtggcgggc aggaagcgtg ttcccatccc tgcgacgggg aagacggctt tttttatcgg
    14581 tttcattctt tttcctttgt attgttttga tgtttaaagg gcgagtttgc ggattaaatc
    14641 ggcgagtgcc tgcgcgcggt ggctttcgcg gtttttgacc tccgaatcca attcggcggc
    14701 ggttttgccg tgtccgggca gataaaaata cgggtcgtaa ccgaaaccgt tttcaccggc
    14761 gggaacgccg ttccattgtc cgtgccatac gccctcggcg ataattggac gcgggtcgtc
    14821 tttatggcgg acaaaaacca atacgcagac gtagcagcag cttttgtcgg tcttgccggc
    14881 aagttcggcg gcaagtttca ggttgttggc ggtatcggat ttgggattgt cgcccgcgta
    14941 acgtgcggaa tggatgcccg gcgcgccgtt tagggcggcg gcacagatgc cgctgtcgtc
    15001 ggcaagcgcg ggcagcccgc tgtattcggc ggcatggcgt gcttttgcca gcgcgttttc
    15061 gacaaaggtg ggatagggtt cggggcattc gggtatgccg aatgcggatt gcggcaatac
    15121 ggtgatgctg taaggtttga ataagttgcc gaattcttcg agcttgccgg cattgccgct
    15181 tgccaaaacg attttttccg gtttttcaga catagcggtt ttcctttgcg gcggattggg
    15241 cggcgcgtag ggatttgtgc cgcaggtaga gggcgaggct gccgatttgt ccgaacagtg
    15301 cgccgaatgc gaaaagaaag gaggcgacgg cgaaggcttt gctgccgacg gtcagcagat
    15361 aagcacccaa gaggacgagc agcataaatg ccagtgtgaa gagggcaaca gacaacagat
    15421 agatttttcg gcggttcatg gcgttcggtc ggaaacggta tgttcggatt atagccgatt
    15481 gggacggtat tccctagagc ttggaaaaat gccgtctgaa acggcgttca gacggcatgg
    15541 cgggcgttat gcctgtttgt tccaacgttc gatggattct ttgatgactt ttttcgcttc
    15601 ttccgcatcg ccccacgatt cgactttggt cgtacctgct tttttcaggt ctttgtaatg
    15661 gttgaagtgg aactcgattt gtttgatcag ctgttgcggc aaatcggaca aagttttgta
    15721 ggcgttgccg ttgttgcggt cgtcggcagg aacgcagacg attttgtcgt ccacttcgcc
    15781 gtcgtcaacg aatttcatca cgccgataac gcgcgcttcc aagaatacgc cggttgccaa
    15841 aggttgttcg gtaacgagca gcacgtccaa ttcgtcgccg tcttcgtcca aagtttgggg
    15901 aatgaagccg tagttggtcg gtttggcgaa gatggcgggt tcgacgcggt cgagttggaa
    15961 tgcggcgagt ttgcggttcc actcgatttt gtggttgctg ccggcgggga tttcgttgac
    16021 gacgttgatg atgccgccgt ccacatcgcc gggggtcagg atttggttga agtctgccat
    16081 ttggtttcct ttgtttggga aagtttgaag tttgaaagta tagcacaaac gtccggctga
    16141 aaatgcgccc gatgccgtct gaaagggtgt acgggcgcgt gttaccgttt gcccaaaaac
    16201 ctgcccagtt ccagaatcgc gcgcctgttg gacggggaaa acactttttc cgccgcttct
    16261 tccaagccga accagccgta ggagacgtgt tcttcgggtt gcagggcgat gggcgtatca
    16321 cgcgggattt cggcagagaa gaggtgttcg cggttttcaa acacgccttt tggatagcgg
    16381 tgccgccagt ggtggtagat ttcgtaaacc gtgctgtcgt gccagtcttg aagctgcccg
    16441 tccgccagca ggatgccggt ttcttcccaa acttcgcgcc ttgccgtttg ggcgacggtt
    16501 tcgcccggtt cgaggctgcc ggttaccgac tgccaaaatc cttccggatg cgtgcgttcg
    16561 atgagcagga tgccgccgtc cccgctataa aggacgacca gtgcggagac ggggtatttg
    16621 agcggttttg ccatcggcat ctttcggcgg gctgcggtaa tgaaggggcg gattatagca
    16681 aacgccgcac gttatggcgt ttatcctttt ccgtatcctt ttttctgcac ggatgggacg
    16741 cgccggtgtt tgccggtaaa ttttccgttg tgtcaaaaag ataagggcgg ttgtgatttt
    16801 aatgcttgcc aaagcgtcgg gcggaaacta taatccgaaa cttatcgagt cggagtgtgg
    16861 cgcagtctgg tagcgcactt gcatggggtg caaggggtcg aaggttcgaa tcctttcact
    16921 ccgaccaaaa attccgaaag ccgctttcaa aagcggcttt tttgccgtcc gtatgattat
    16981 gatgtagagt acgcggcgac agacattcaa atgccgtctg aaaaccgttc agatggcatc
    17041 tctttatctt agtttcattc cgtaccatct taaggaacat caaattgggc atttcccgca
    17101 aaatatccct tattctgtcc atactggcag tgtgcctgcc gatgcatgca cacgcctcag
    17161 atttggcaaa cgattctttt atccggcagg ttctcgaccg tcagcatttc gaacccgacg
    17221 ggaaatacca cctattcggc agcagggggg aacttgccga gcgcagcggt catatcggat
    17281 tgggaaacat acaaagccat cagttgggca acctgttcat ccagcaggcg gccattaaag
    17341 gaaatatcgg ctacattgtc cgcttttccg atcacgggca cgaagtccat tcccccttcg
    17401 acaaccatgc ctcacattcc gattctgatg aagccggtag tcccgttgac ggattcagcc
    17461 tttaccgcat ccattgggac ggatacgaac accatcccgc cgacggctac gacgggccac
    17521 agggcggcgg ctatcccgct cccaaaggcg cgagggatat atacagctac gacataaaag
    17581 gcgttgccca aaatatccgc ctcaacctga ccgacaaccg cagcaccgga caacggcttg
    17641 ccgaccgttt ccacaatgcc ggcgctatgc tgacgcaagg agtaggcgac ggattcaaac
    17701 gcgccacccg atacagcccc gagctggaca gatcgggcaa tgccgccgaa gccttcaacg
    17761 gcactgcaga tatcgtcaaa aacatcatcg gcgcggcagg agaaattgtc ggcgcaggcg
    17821 atgccgtgca gggtataagc gaaggctcaa acattgctgt catgcacggc ttgggtctgc
    17881 tttccaccga aaacaagatg gcgcgcatca acgatttggc cgatatggcg caactcaaag
    17941 actatgccgc agcagccatc cgcgattggg cagtccaaaa ccccaatgcc gcacaaggca
    18001 tagaagccgt cagcaatatc tttacggcag tcatccccgt caaagggatt ggagctgttc
    18061 ggggaaaata cggcttgggc ggcatcacgg cacatcctgt caagcggtcg cagatgggcg
    18121 cgatcgcatt gccgaaaggg aaatccgccg tcagcaacaa ttttgccgat gcggcatacg
    18181 ccaaataccc gtccccttac cattcccgaa atatccgttc aaacttggag cagcgttacg
    18241 gcaaagaaaa catcacctcc tcaaccgtgc cgccgtcaaa cggcaaaaat gtcaaactgg
    18301 cagaccaacg ccacccgaag acaggcgtac cgtttgacgg taaagggttt ccgaattttg
    18361 agaagcacgt gaaatatgat acgaagctcg atattcaaga attatcgggg ggcggtatac
    18421 ctaaggctaa gcctgtgttt gatgcgaaac cgagatggga ggttgatagg aagcttaata
    18481 aattgacaac tcgtgagcag gtggagaaaa atgttcagga aataaggaac ggtaataaaa
    18541 acagtaactt tagccaacat gctcaactag agagggaaat taataaacta aaatctgccg
    18601 atgaaattaa ttttgcagat ggaatgggaa aatttaccga tagcatgaat gacaaggctt
    18661 ttagtaggct tgtgaaatca gttaaagaga atggcttcac aaatccagtt gtggagtacg
    18721 ttgaaataaa tggaaaagca tatatcgtaa gaggaaataa tagggttttt gctgcagaat
    18781 accttggcag gatacatgaa ttaaaattta aaaaagttga ctttcctgtt cctaatacta
    18841 gttggaaaaa tcctactgat gtcttgaatg aatcaggtaa tgttaagaga cctcgttata
    18901 ggagtaaata aaaatggcaa tttggaatta tcggtactac cttatcccat cagctgctat
    18961 cagaaataaa tttaatgcaa ataaagatat catacttgat gagtatcgat ctaatggttt
    19021 tcagaatttt aatgagaata aaagttttga aaattacttt atcgataatg atgttatatt
    19081 attatcaata ataaatgaag caaaaaaaca gcttaaattg aaagaatctt gggataaaga
    19141 cgcaatcatg ttttgtgata attttggtaa tagtcttacc gtttggccag atgatataga
    19201 gtgcgaactt gatttaagat ttgattatac taaatttatt cagaaaacca ttgattgggc
    19261 aataaaatat aattgtctac ttgtaataga aaaaacagga aatgtagttt cccctaatat
    19321 aaataatctg atgtatgaaa taaaagcata tttggaaagc aagccgtggc ccatatgaaa
    19381 cctaaactca acaagtagga tgtgtgcgga acgcacgtat gcggttctca aggtttgagc
    19441 taagaggccg tctgaaaaca gaaaaactgt ttcagacgac ctttctttta accagttgcc
    19501 acagcaaccg gacaaaagca gcctacctcc acatccatat aggcaataca ggggagatat
    19561 tttgtaaatt ctacgaatat tttacctgct aaacagggta ggatatggta tgaagcgaac
    19621 attggcttaa taaacactat gtcaagatcg aatcaggctg gtactagatt gttgtattcc
    19681 aattatggat tgctatatat aacaactgat cattatatct ctgcaacacg gtttgtagct
    19741 tggaaatagg agtataactt atgcaattag agattatcgg tagtaaaatt tatacggaac
    19801 aagattttca taatcaaatt tcaaaaatat tttctataca agattattat gggaacaatc
    19861 ttgatgcttt atgggattta ttaagcacaa atgtagaacg accgattact ttggtatgga
    19921 aagatgctat gttctcaaaa aatcaattag aaaatatatt tattgaaatc gtaaatgttc
    19981 tagaaagagt taagaaacaa gatgaggatt atggattcga agaaaaattt aattatattt
    20041 tagagtaagt aaaccctaat tacattacgt acacaggctt aaaactcccc agagccaatt
    20101 aagcaagccg taacccatat aaaacttaaa ctcaacaagt agcatgtgtg cggaacgtac
    20161 gcatgcggtt cttaaagttt gagctaagag gccgtctaaa aacagaaaaa ccgtttcaga
    20221 cggtctttgt ttaacgccac cgatccagcg ggttacaaag cgcagtcaat gccgctgcgc
    20281 cttatgcctc cgaagcaata ggcagaacat ttggacacgg tgaaaacaaa aacgaaaccg
    20341 cccaagccgt cggacatttc cttttaggag cagctattgc ccgcgtcaac ggtggtaatt
    20401 ttgctgccgg cggctcggca gcagttgcag ctgaaaaggc ggcggaacat cttgcccaac
    20461 agtataacga cggtaaaacc gcaatcgatc cgcaaacagg cgagttcaat gccaacctgc
    20521 tgccggaaca tatcaaagag gaaatcaaat caaagagcgg ggtgattgca tcgctgacgg
    20581 gcgcggccgt gggcggcacg ccggtagatg cgcaaaccgg aggtgcggtc ggacagaatg
    20641 cggtggaaaa caacctctat ctgacatcgg aagccttaaa gaaggacaag cagacagctc
    20701 gtaaaattta ttccgtcata aaagagcaag tcaagcatga atgcagttcc acaggaagaa
    20761 ttaccgaatg tcgtcaaaat ataggacgca ttatcgaatt tacccaagac aaacgctttg
    20821 acagtaggtt taaggactta aaaaaagaat ccttatatta cctaaataaa catcctgatt
    20881 tagtagcctc ttatttgaag gctgaatacg aaaagctgga tagggaagac aaaagtatcc
    20941 tgcaccgcta catctcaccc ggggctgaaa tcgtttcggg cagtttgggg gttgttcttt
    21001 caggagtagc cggaggcgga tcttgtgccg agactttcgg cttaggctgt gccgccgctt
    21061 tggttggtgt aacgtcttcc tacgatcatg tcattactgg gacgaaaaac ttcggaaaaa
    21121 aagccagcga gcaacgaccg acgattgcgg ttcaggcctt gaagcagttg gggctgtcgg
    21181 agcaggctgc ggaatatgtt cagttctcta tagatttgtt cagtgtgggt aaatcggggg
    21241 gcggtatacc taaggctaag cctgtgtttg atgcgaaacc gagatgggag gttgatagga
    21301 agcttaataa attgacaact cgtgagcagg tggagaaaaa tgttcaggaa acgagaagaa
    21361 ggagtcagag tagtcagttt aaagcccatg cgcaacgaga atgggaaaat aaaacagggt
    21421 tagattttaa tcattttata ggtggtgata tcaataagaa aggcacagta acaggagggc
    21481 atagtctaac ccgtggtgat gtacgggtga tacaacaaac ctcggcacct gataaacatg
    21541 gggtttatca agcgacagtg gaaattaaaa agcctgatgg aagttgggag gtgaaaacga
    21601 aaaaaggtgg gaaagtgatg accaagcaca ccatgttccc aaaagattgg gatgaggcta
    21661 gaattagggc tgaagttact tcggcttggg aaagtagaat aatgcttaag gataataaat
    21721 ggcagggtac aagtaaatcg ggtattaaaa tagaaggatt taccgaacct aatagaacag
    21781 catatcccat ttatgaatag taatatttat gaaaaattag gagattaatg atgaaaagaa
    21841 ttaagtgctt ttgtgataaa tttccatcag gagatacatt tagaatgtgt atcattctgg
    21901 atgactatga taatagggtt gattattatg taggaatata tgattacatt acgtctacct
    21961 taatgagcga tatttactat cgatccacga ttgatgagca tttcaagatt atagaattaa
    22021 tagaaaataa tccaaatgaa atttatgatg atggcggtgg tcaacaattt tgcctagaat
    22081 ttcatcatga taaggtcatt ttttatcaca atgaatttga tgaagaagat ggttatccag
    22141 tattaagctg ttcgctgcat acttttaaaa ctgctttaat tgcttggaat gcttttttgc
    22201 aattgcctaa aagtattcat tcggtggtgg agactgtgat tgaggaataa gcataattag
    22261 cttaatgaat agaatcagcg atatagaaag gtagaatcag atatatccca cctaaaaatt
    22321 actctccttc agcaccgcta ccaaaaggac ctaataatgg atatagtgcc gggaatttaa
    22381 gcaaaaaagt cctgacttta gtttacataa acggcaaact caaattcggg ccaagcagtc
    22441 tgccgtcttc ggcattgaaa gcacctgttc ccattgtcgg caaggctgag gctccgcccg
    22501 gaaaagctgt gcctgtcggc gaagcccgca ttccttcaaa tccaaaagcg gtaaaaggaa
    22561 caaccgttac cctgtcgcag gaacaacgcc tagccaacgg agagctgata ccgaaaggct
    22621 ctgtggtaac gtggtcggac aatgcggtga aggttgtgcg gcctgatggg aaaaagcgga
    22681 gatttaatag tcgggattgg gaacagaagg cattgccgaa accgcaacta ccgaaagatt
    22741 acagagatga catcaacata ggtggaaata atcctagatt taatcagcaa cggcatgaaa
    22801 aaatcgaatc ccacaaccca aacagaatag aggagatacg ccaacgtaat gccgtttctt
    22861 ctgcagaaag gcaggctgat gcattaaaaa ggatgcaaac gtctggccgc acccgcctgc
    22921 ctgggcagcc acaaaaagga aaacccggcg ctgctagaga aatgtcctct tcagacaatc
    22981 cgaatcaaac agccgaggct tttgcacgtc gatatttagg caggaaacct acactaatgg
    23041 aacgagtcga aggtgaaaaa ttatacggag gtaaatgtgt gggctgttgg aaagcgcaaa
    23101 tgccggacgg aacctttgtg gtgtataggc cagcaggtaa tgcttctatg accaagggaa
    23161 ctactgcgtc tgttgatatt aataacccaa cattaaataa cttaaatatt aatttaaaag
    23221 gcaagccaac agagttaaaa tttaaattcc ctgctagata aggatgtttt aatgaattta
    23281 gagacagcag aaaatattca atgcgaattt gagtatttag cattagatgg ttattttcca
    23341 atgcattttg catcgcatgg tcaaggaaac aaagattggc aatttgcagt tgaattcata
    23401 tatagattat taatatgtca attagcaact cttgaaccta tcaactttga aacgaaaaat
    23461 gatattttag acttttgcca taatttagca aaacaaagtc cttttaataa tgataatgag
    23521 gtgtggtatc agggggaaat tgtattaaca aaaaaaggga tagatttaat aaaggaatat
    23581 attccagagg cgtttgaaga gtggaatgga aagaaatttg aattaaacat tcctttcatt
    23641 aaaacattaa aaaatatatt tgttaattat gaggtagcat gggatgagaa taatccacta
    23701 ttccccatta tatctttaaa cctcggcacc tgataaacat ggggtttatc aagcgacagt
    23761 ggaaattaaa aagcctgatg gaagttggga aatgaaaaaa ggaaggggcg gaaaacctat
    23821 gacaaatcat tctatgttcc caaaagattg ggatgaggct agaattaggg ctgaagttac
    23881 ttcggcttgg gagaaaagaa aggaattaga aggtcaaaaa tggagaggta caagtaaatc
    23941 tggtgttgaa atagaaggat ttacggaacc taatcgaaca gcttatccac tttataatag
    24001 taaatgaagt attgattaaa aaggtgtttt taaatgtata aaataaaatg tttttatgat
    24061 cagtttagtt ctggtgaatt atttaactac tgccagtttt tagataattc ttctaatcaa
    24121 aagataaata cacgaggaac ggtgtatcaa tatattattt atgttttaac aggagacctt
    24181 tatctacaaa aagacataga tgaaaattta gaatttatcc atcaagcaga aaataatccc
    24241 aatgaagttt attcaggagg tggacaaggt ttttgctggg atatttctgc tgaaaaagta
    24301 gttttctatc acaacgaatt tgatgaagaa gacggctggc ctgatttaag ctgttcgctg
    24361 catactttta aaactgcttt aattgcttgg aatgcttttt tgcaattgcc taaaagtatt
    24421 cattcggtgg tggagactgt gattgaggaa taagcataat tagcttaatg aatagaatca
    24481 gcgatataga ttggactgca aatccacgct tatacgctgt gccatgatta acaggaagag
    24541 agcaacttgg atgggctagt agggatggta agcatttaaa tatatcaatt gatggaaaga
    24601 ttacacacaa atgactaatt taaaattaga tttctactct gaagttatta taaaagattc
    24661 ttgccctaat gatttgttag aaaatggtga gactattaaa ggaaaaaaag gagtggtatt
    24721 aggtataagc gaagaagatg gtataatcta tggctatact attttacttt ttgatataaa
    24781 atattgtata tatatagata agaaatatat tataccgact ggaaaaaaat tctctcgcga
    24841 tgatttttat tagctaattt aagtaattta agcaagtttt ttagatactg aaactggtaa
    24901 ttatgtttat gtaagcataa ggagttcaga ttgaaggatt ctacagggca aatgaggctg
    24961 gcaaccaagg atttggcgga agccattaaa cgaggagaag tacgtagttc tgcttttaca
    25021 acaaagcaac taaaggcaat cgaaaaagga gaatctaaaa taccggatta cacttggcat
    25081 catcatcaag acactggaag gatgcaattg attaatgaag acttgcatca tgataccggc
    25141 catatcggtt ggagagcgat gagtaaagga aagtaa
//
LOCUS       DAXHNP010000011        24869 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.011, whole genome shotgun sequence.
ACCESSION   DAXHNP010000011 DAXHNP010000000
VERSION     DAXHNP010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24869
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.011"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(91..1038)
                     /locus_tag="ACFM5C_000328"
     CDS             complement(91..1038)
                     /locus_tag="ACFM5C_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stomatin-like protein"
                     /protein_id="HFC6068103.1"
                     /translation="MEFFIILLVAVAVFGFKSFVVIPQQEVHVVERLGRFHRALTAGL
                     NILIPFIDRVAYRHSLKEIPLDVPSQVCITRDNTQLTVDGIIYFQVTDPKLASYGSSN
                     YIMAITQLAQTTLRSVIGRMELDKTFEERDEINSTVVSALDEAAGAWGVKVLRYEIKD
                     LVPPQEILRSMQAQITAEREKRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAV
                     NASNAEKIARINRAKGEAESLRLVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVA
                     AFNNLAKESNTLIMPANVADIGSLISAGMKIIDSSKTAK"
     gene            complement(1053..1460)
                     /locus_tag="ACFM5C_000329"
     CDS             complement(1053..1460)
                     /locus_tag="ACFM5C_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HFC6068104.1"
                     /translation="MTVWFVAAVAVLIIELLTGTVYLLVVSAALAGSGIAYGLTGSTP
                     AAVLTAALLSALGIWFVHAKTAVGKVETDSYQDLDAGQYAEILRHAGGNRYEVFYRGT
                     HWQAQNTGQDVFEPGTRALIVRKEGNLLIITHP"
     gene            1541..2200
                     /gene="ung"
                     /locus_tag="ACFM5C_000330"
     CDS             1541..2200
                     /gene="ung"
                     /locus_tag="ACFM5C_000330"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFC6068105.1"
                     /translation="MDTWHDALGNEKRQPYFQEILNAVRQERLSGQIIYPPAEDVFNA
                     FRLTAFDRVKVVILGQDPYHGAGQAHGLAFSVRQGVRIPPSLLNIYKELETDINGFSI
                     PDHGCLTAWAEQGVLLLNTVLTVRAGQAHSHALLGWERFTDTVIRQLAAHRKHLVFML
                     WGGYAQQKGRLIDSQNHLILTAPHPSPLSAYRGFFGCRHFSQANSYLSQHGIEPINWK
                     L"
     gene            2361..2759
                     /locus_tag="ACFM5C_000331"
     CDS             2361..2759
                     /locus_tag="ACFM5C_000331"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFC6068106.1"
                     /translation="MIDVTDFNDEDKLGKGKEMIDRLSRLVGIFKKLNLSSNQAEDDD
                     LLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISADCRPAPAFMTRPAARV
                     RCCSKPPPKPAAKSAFTVRKKMWQPRPLPV"
     gene            2672..3305
                     /locus_tag="ACFM5C_000332"
                     /pseudo
     CDS             2672..3305
                     /locus_tag="ACFM5C_000332"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
     gene            3653..4597
                     /locus_tag="ACFM5C_000333"
     CDS             3653..4597
                     /locus_tag="ACFM5C_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6068107.1"
                     /translation="MAHPDYAAFKAGHLAKFAAWHTQNDLAAIQPGRLIRKWSESLLD
                     AFKPGSLIEEYDFYQILTDYWAETLQDDVYLIAQDGWKAVKNLAEITKESDEAANLTV
                     VFEETETDKKGKAKTKRISKKYRSEVIAPELVARRYFSDGIAKLEEKQSELERLSQEL
                     ENHIEEHGGEEGALNDVLDAKGKLSAKLLKTALEESGIEEGERAVLQTTQTLMTQEKA
                     AKDAVKTQIEALNLAVFKQFGRLSEAEIKQLAVQDKWLADLQSRIENRLENSIQQLIS
                     RLNTLEDRYRSPMAELAREVEKWQSKVNAHLENMGFGG"
     gene            4748..4873
                     /locus_tag="ACFM5C_000334"
     CDS             4748..4873
                     /locus_tag="ACFM5C_000334"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068108.1"
                     /translation="MLERHRNARFMAHMDNFLPNWQSIKQQLNALELFAQIYNLT"
     gene            complement(5163..5678)
                     /locus_tag="ACFM5C_000335"
     CDS             complement(5163..5678)
                     /locus_tag="ACFM5C_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068109.1"
                     /translation="MKSKLPLILINFSLISSPLGANAAKIYTCTINGETVYTTKPSKS
                     CHSTDLPPIGNYSSERYIPPQTPEPVSSPSNGGQVVKYKAPVKTVSKPAKSNTPPPQQ
                     APSNNSRRSILEAELSNERKALTEAQKMLSQARLAKGGNINHQEINALQSNVLDRQQN
                     IQALQRELGRM"
     gene            complement(6144..8066)
                     /locus_tag="ACFM5C_000336"
     CDS             complement(6144..8066)
                     /locus_tag="ACFM5C_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6068110.1"
                     /translation="MIEIKNLTLQRGLKVLLDKANATVNPGQRVGLIGKNGTGKSSLF
                     ALIKGEITQDGGDVSIPKNWRLASVSQETPDLDISALDYVLQGDAELQTLQTALRQAE
                     AQNDGMKQAEYHAKLEEIDAYTAPARAAKLLNGLGFSQEEHSRPVKSFSGGWRMRLNL
                     AQALICRADLLLLDEPTNHLDLETVLWLENHLASLPCTQIIISHDRDFLNAATTQTIE
                     LSQQKLTQYGGNYDFYQNERAQRLAQQQAAYVKQQAQIKHLQSFIDRFKAKATKAVQA
                     QSRMKALVKLERIAPAHLDSEFSFEFYNPEHLPNPLLKLEHADLGYEGKTVLHDITLS
                     LESGARYGLLGVNGSGKSTFIKALAGKIDLLSGSIVRSEKLNIGYFAQHQLDTIRADQ
                     NPVWHIQQLSPEVREQEIRNFLGGFNFVGDMALQKTEPFSGGEKARLALAMIIWQKPN
                     LLLLDEPTNHLDLDMRHALTLALQSFQGALIIVSHDRSLLEATTDSFLLIDKGRLKNF
                     DGDLNDYRQWRLAQENAAAAPAASAQSQSRKDTKRIEAQIRQEKARRGKPIQQKIDRA
                     EKEMAQLSEIQTACEAFLAQEDAYLEANKEKLQNTLSQLAKVKTQLAQIEEVWLACQE
                     ELERIETEIEKQFAER"
     gene            complement(8143..8514)
                     /locus_tag="ACFM5C_000337"
     CDS             complement(8143..8514)
                     /locus_tag="ACFM5C_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mth938-like domain-containing protein"
                     /protein_id="HFC6068111.1"
                     /translation="MLFEENPIDGQFAEYECGAGGIRLAGQSFHKPVLVHKDSVCLSQ
                     CRTLSDLTPENLLSDIKPVDYLEILIIGTGAAQEFIHPKIMADFSRIGIGVECMNTDS
                     AFRTLVFLHSEGRRAWAWLQP"
     gene            8711..10018
                     /locus_tag="ACFM5C_000338"
     CDS             8711..10018
                     /locus_tag="ACFM5C_000338"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFC6068112.1"
                     /translation="MKPVNIGLLGLGTVGGGTAAVLRDNAEEISRRLGREVRISAVCD
                     LSEEKARQICPSAAFVKDPFELVARKDVDVVVELFGGTGIAKDAVLKAIENGKHIVTA
                     NKKLLAEYGNEIFPLAEEKNVMVQFEAAVAGGIPIIKALREGLAANRIKSIAGIINGT
                     SNFILSEMREKGSAFADVLKEAQALGYAEADPTFDIEGNDAGHKITIMSALAFGTPMN
                     FSACYLEGISKLDSRDIKYAEELGYRIKLLGITRKTGKGIELRVHPTLIPESRLLANV
                     NGVMNAVRVNADMVGETLYYGAGAGALPTASAVVADIIDIARLVEADTAHRVPHLAFQ
                     PAQVQAQTILPMDEITSSYYLRVQAKDEPGTLGQIAALLAQENVSIEALIQKGVIDQT
                     TAEIVILTHSTVEKHIKSAIAAIEALDCVEKPITMIRMESLHD"
     gene            10011..10445
                     /locus_tag="ACFM5C_000339"
     CDS             10011..10445
                     /locus_tag="ACFM5C_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068113.1"
                     /translation="MTEPKHEMPTEEQVAARKKAKAKIRTIRIWAWVILALLASTALL
                     SQCAMSKPQAKQKIVESCVKNIPFAEKWQNDLRARGLDSNNTRLTVDYCKCMWEQPLD
                     RLSEKQISSFGKLGAQEQLDLLGGANAFETRDKQCVADLKSE"
     gene            complement(10504..10773)
                     /locus_tag="ACFM5C_000340"
     CDS             complement(10504..10773)
                     /locus_tag="ACFM5C_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFC6068114.1"
                     /translation="MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTL
                     VGFGTFYVGERAERQGRNPKTGEPLTIAAAKTPKFRAGKALKDAL"
     gene            complement(10955..13417)
                     /gene="lon"
                     /locus_tag="ACFM5C_000341"
     CDS             complement(10955..13417)
                     /gene="lon"
                     /locus_tag="ACFM5C_000341"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFC6068115.1"
                     /translation="MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALE
                     NAITREEPVFLLAQTDAALEEPVAADLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGR
                     VLTIEDTGGLFVSHIEAVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSI
                     NGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAQLESELDIMQAEKRIR
                     GRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEAGIKKAGMSKEAEEKCLS
                     ELKKLKMMPPMSAESTVVRNYIDTLLELPWKKKSRVSKDIAKAGLVLDTDHYGLEKVK
                     ERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDES
                     EIRGHRRTYIGSMPGKILQNMAKAGVKNPLFLLDEIDKLGSDFRGDPASALLEVLDPE
                     QNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQY
                     LVPKQMKRNGVKEGELLVEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLDE
                     DKKRLSETKKTSKAKPKAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVG
                     GELLTVEAAALPGKGVIQCTGQLGDVMKESVSAAWSVVRSRAESVGLASDFYEKKDIH
                     VHVPEGATPKDGPSAGIAMTLAMVSAFSKIPVRADVAMTGEITLRGEVLPIGGLKEKL
                     LAALRGGIKHVLIPKDNFKDLEEIPENVKTGLTIHPVKWIDEVLALGLESQPEPWAEP
                     SGAEAVAESASKPKPRSRATKH"
     gene            13668..14771
                     /locus_tag="ACFM5C_000342"
     CDS             13668..14771
                     /locus_tag="ACFM5C_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6068116.1"
                     /translation="MSSFIFPDNGAEWRNESVQKPPKGWHYVRESGADGILKAAYQNI
                     ATVWQGDFHNAKQVLSAMKKRARKPAAVRSDADIAALFHAHRMKQAQQSRILNMLAVE
                     IRPGFVLDNKRAPDIRAALLDVYGEADGKPFFLPLNLLLGFMGAHEWHKKGVAVPQLG
                     GSIHVPFGVFSPLRGEYLDLLAHAPSTGFQTAFDIGTGSGVLAAILAKQGIPSVIGTD
                     TNPKAVACARANIARLGFEKQVEIRETDLFPEGFADLIVCNPPWLPAKPTSAVESALY
                     DPESAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLGLRPADFLEKAFIRAGLRVADMM
                     KTKPKHKKAANPSDPLAFARTRETTFLYRLKKA"
     gene            complement(14799..16544)
                     /gene="recD"
                     /locus_tag="ACFM5C_000343"
     CDS             complement(14799..16544)
                     /gene="recD"
                     /locus_tag="ACFM5C_000343"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HFC6068117.1"
                     /translation="MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQN
                     GHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAA
                     GTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
                     LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAIRRHLLKLEGQTVHRLL
                     KLRPPKMQAAFNPVYPLPLDVLVIDEASMLDTALMLQLLKAVKTGARVILLGDENQLP
                     SVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLAQNTAHLSFSHRFGD
                     NSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGN
                     IEAAYAGISDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYA
                     LELFNGDIGLIMEDVGRQGSLAAYFADADGFKKVAVSCLPDFEPAFAMTVHKSQGSEY
                     REVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAAATVKTR
                     QTALGSMLERVFSQE"
     gene            complement(16612..17307)
                     /gene="lolD"
                     /locus_tag="ACFM5C_000344"
     CDS             complement(16612..17307)
                     /gene="lolD"
                     /locus_tag="ACFM5C_000344"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HFC6068118.1"
                     /translation="MSELILKCEGVGKRYRDGGLDVRVLHGLDLEILAGESTGIIGSS
                     GSGKSTLLHILGGLDMPSEGRVLLMGEDLRTLSQRQLGILRNRHLGFVYQFHHLLPEF
                     SALENVMMPLLIGKKKREEAAETAMAMLEKVGLKHRSAHRAGELSGGERQRAAIARAL
                     VTQPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRFERVMVM
                     KDGSLHPKQGANA"
     gene            complement(17300..18547)
                     /locus_tag="ACFM5C_000345"
     CDS             complement(17300..18547)
                     /locus_tag="ACFM5C_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HFC6068119.1"
                     /translation="MFSLEAWIGLRYLRAKKRNGFMSFITMVSIAGIALGVTALIVVL
                     SVMNGFQKEIRGQLLNVAPHAEIGYIDNTDTDWRNLLRFTENRKGILAAAPYVSNQAL
                     LANAGEIRGVQMRGILPSEERKVVEYGDKMPAGKFEDLIPGEFDIILGVGLAEALGAE
                     VGNKVTVITPEGNVTPAGVVPRLKQFTVVGLVKTGVYEVDNSLAMTHIQDARVLYRLD
                     KEVAGLRLKLADPQNAPALTAKLIPEAQRDTVWVRDWTFSNRSYFEAVELEKRMMFII
                     LTLIIAVAAFNLVSSLVMAVTEKQADIAILRTLGLSPAGVMKIFMVQGAFSGFFGTLA
                     GVVCGVLLGWNVGRVVAFFENLLGVHLINSQVYFIDYLPSDVDMGDVALIACISLGLS
                     FVATLYPSWRASKTQPAEALRYE"
     gene            18752..19030
                     /locus_tag="ACFM5C_000346"
     CDS             18752..19030
                     /locus_tag="ACFM5C_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068120.1"
                     /translation="MNIRTAFALCAIALSAAAAAYAKEIKIDANNTPYSEADAQKLAA
                     TAVGMGVKEPISLNGGSGSITVSGSSATQCVFKVGNGGALQIQGLNCK"
     gene            complement(19086..19703)
                     /gene="recR"
                     /locus_tag="ACFM5C_000347"
     CDS             complement(19086..19703)
                     /gene="recR"
                     /locus_tag="ACFM5C_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFC6068121.1"
                     /translation="MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEK
                     LVDALQTALKQVHHCAMCNTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEVANCH
                     DGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
                     FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA"
     gene            complement(19770..21308)
                     /locus_tag="ACFM5C_000348"
     CDS             complement(19770..21308)
                     /locus_tag="ACFM5C_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HFC6068122.1"
                     /translation="MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGD
                     EKISDHSINNAIQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIV
                     DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQ
                     AEQLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVA
                     LNLKDFADKQTVSETEVKNAFEERVARLPANEAKLSFEQEKAAVENELKMKKAVADFN
                     KAKEKLSDDAFNHPASLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDV
                     LKKKHNSEVLSINNEIAWVVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAK
                     DVLTQLNGGKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPTNGKPAYVRLTGLP
                     APVIVEVQAITPPDDIAAQLPLAKQALAQQQSANTFDLLIRYFNGKIKQTKGAQSVDN
                     GGGQ"
     gene            complement(21362..21736)
                     /locus_tag="ACFM5C_000349"
     CDS             complement(21362..21736)
                     /locus_tag="ACFM5C_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HFC6068123.1"
                     /translation="MIVLHGIPNCDTVKKAKNRLAGYGLEFEFRDFKKQMPSEAEICS
                     WLEQVPLETLLNKRGTSWRKLDAETQQKALSSTAEAVKLMSEMPSLIKRPVLECGGKV
                     YAGFSEETYDGIFNRQAPCRQG"
     gene            21886..23514
                     /locus_tag="ACFM5C_000350"
     CDS             21886..23514
                     /locus_tag="ACFM5C_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HFC6068124.1"
                     /translation="MISTNGITMQFGAKPLFENVSVKFGEGSRYGLIGANGSGKSTFM
                     KILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAMTERDAI
                     YANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVGISEDLHNAKMAEVAPGF
                     KLRVLLAQALFSKPDVLLLDEPTNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEV
                     CTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQELQEFVARFSANK
                     SKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFE
                     TQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGSIKWAEK
                     ASVGYYPQDHENDFDVDMDLSEWMRQWGQEGDDEQVIRGTLGRLLFGSNDVVKKVKVL
                     SGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVSHDRQF
                     VSSLATQIIELDGKGGYEHYLGDYESYLEKKGVA"
     gene            23599..24852
                     /locus_tag="ACFM5C_000351"
     CDS             23599..24852
                     /locus_tag="ACFM5C_000351"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HFC6068125.1"
                     /translation="MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGK
                     DFPVFLHPETHEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDA
                     DGKIIDPFGGQRDLAAGILRHVSPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQM
                     VENGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRAD
                     YHPEIDSGIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVE
                     PVREVNQRLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQT
                     ALNVCIADTQGRLNREHTPYPQRAHWLALLEAANQADSGKIAAECRSQGKAHLIAEQI
                     DRARLAQIAPLQKAFRAAQDKTEKH"
BASE COUNT         5764 a         6707 c         6458 g         5940 t
ORIGIN      
        1 tttgaagcgg aatacaacct tgcccgggtt taaataaaaa tgccgtctga accccgaaaa
       61 cagagcttca gacggcattt tcatcacggc ttatttggcg gttttgctgc tgtcgataat
      121 tttcataccg gcagaaatca ggctgccgat gtcggcaaca ttggcgggca taatcagcgt
      181 attgctttct ttggcaagat tgttgaacgc agcgacgtat tgttccgcaa tcttcagatt
      241 gaccgcatcc gcgccgcctt gggtttgaag ggcggcggca atttgacgga tggcttcggc
      301 attggcttcg gcaacaaggc gcagggattc cgcttcgcct ttggcgcggt tgatgcgggc
      361 gattttctcg gcatttgacg cattgaccgc ggcctgggcc tcgccttcgg attgttggat
      421 ttcggcttcg cgctgaccac tggcaaggtt gatttgttcg attttacggc cttcggattc
      481 ggcgatacgg gcgcgttttt cgcgttcggc agtaatttgc gcctgcattg agcgaaggat
      541 ttcttgcggc ggaaccaaat ccttgatttc gtaacggaga actttcacac cccaagctcc
      601 ggcggcttca tcgagggcgg aaacgacggt gctgttgatt tcgtcgcgtt cttcaaacgt
      661 tttgtccaac tccatacgcc cgataacgga acgcagcgtc gtttgggcaa gctgggtaat
      721 cgccataatg tagttgctcg aaccgtatga ggcgagtttg ggatcggtta cttggaaata
      781 gatgatgccg tcaaccgtca gctgggtgtt gtcgcgcgtg atgcagacct ggctgggtac
      841 gtctaaaggg atttctttca gcgaatgacg gtaggcgacg cggtcgataa agggaatcaa
      901 aatattcaaa ccggccgtca aggcgcgatg gaaacgtcca agcctttcga caacgtggac
      961 ttcctgttgt gggatgacaa caaaggattt gaaaccgaaa acggcgacgg ctaccaacaa
     1021 gataatgaaa aattccataa ttcctccgag tgttaagggt gtgtgataat aagaaggttg
     1081 ccttccttgc ggacaatgag ggcgcgcgtt cccggttcaa acacatcctg ccccgtattt
     1141 tgcgcctgcc agtgcgtacc gcgataaaaa acttcgtaac ggttgccgcc tgcgtgccgg
     1201 aggatttcgg catattgccc ggcatccaaa tcctgatatg aatccgtttc aacttttccc
     1261 acggcggtct tggcgtgtac gaaccaaata cccagcgcgg aaagcagagc ggcggtcaag
     1321 acggcggcag gcgtgctgcc ggtcagcccg taagcaatgc ccgaacccgc caaagccgcg
     1381 ctgacaacca aaagataaac cgttcccgtc aataattcga tgattaagac ggcaacagcg
     1441 gcaacaaacc atacagtcat acatttcccc acaaagcgcg tcgtttgaca aaatcacgcg
     1501 atatcagcag tatagccgaa tttgaaagga tagggcagat atggatactt ggcacgatgc
     1561 actgggcaac gaaaaacggc aaccgtattt tcaggaaatt ttaaatgcag tcaggcagga
     1621 acgtttgtcg gggcaaatca tctatccgcc ggcggaggat gtgttcaacg cattccgcct
     1681 gacagcgttt gaccgagtca aagtcgtcat tctcggacaa gacccgtatc acggggcagg
     1741 gcaggcgcac ggtttggcat tttccgtcag gcagggtgtc cgcataccgc cgtctttact
     1801 caatatctac aaagagttgg aaaccgacat caacggtttt tccattcccg atcacggctg
     1861 cctgacggct tgggcggagc agggcgtatt gcttctgaac acggttttga cggtgcgtgc
     1921 aggacaggcg cattcgcacg cccttttagg ctgggaacgc tttaccgata ccgtcatcag
     1981 gcagcttgcg gcgcaccgca agcaccttgt cttcatgttg tggggtgggt atgcacaaca
     2041 aaaagggagg ctgatagaca gtcaaaatca tttgatattg accgcaccgc atccgtctcc
     2101 tctgtcggca tatcgcggtt ttttcggctg ccgccatttt tcacaggcaa acagctattt
     2161 gagtcaacac ggtatcgaac cgataaactg gaagctatga atgccgatat agccgttgcc
     2221 gccggcgtgt taaaatcgcg attgagctgc acgccggtac gacttttgac gacatcgtca
     2281 aactcaaaaa caccgccgac atcggcgacc gcctgaataa gattatcgcc caaattgccg
     2341 aagccaacga cttaaaaggc gtgatcgacg ttaccgactt caacgacgaa gacaaactgg
     2401 gtaaaggtaa ggagatgatc gaccgtttga gcaggcttgt cggcattttt aaaaagctca
     2461 acctttcttc caaccaagcc gaagacgacg atttgttagg tgatgcctac gaatacctga
     2521 tgcgccattt tgcgaccgag tcaggcaaat ccaaagggca gttttacacg cctgccgaag
     2581 tctcccgcat tatggcgaag attatcggaa tcagcgcaga ttgccgtcca gcaccagcgt
     2641 ttatgacccg acctgcggct cgggttcgct gttgctcaaa gccgccgccc aagccggcag
     2701 ccaaatcagc ctttacggtc aggaaaaaga tgtggcaacc gcgtcccttg cccgtatgaa
     2761 tatgattttg cacaacaacg aaaccgccga aatcaacacc gggaacacct tgtccgattc
     2821 gtctttccgt gatgaaaacg acgggcttaa gaccttcgat tttgccgttg ccaatccgcc
     2881 ttatcccgcc cgaaaaaaac ggcgattacg cctttttgct gcatctgctc aaaagcctga
     2941 aaccaagcgg caaaggtgcg attattcttc cgcacggtgt gctgtttcgc ggcaatgccg
     3001 aagcgcgtat tcgcacggaa ttgcttaacc ttgaccttat taaaggcatt atcgggctgc
     3061 ctgccaacct gttttacggc acgggcattc ctgcctgcat catcgtcatc gacaaagaac
     3121 acgcccaaac cgcccaattt gccgaagagg gaacaaacca agttatcagc ggcggcagcg
     3181 tgtttatgat tgacgcatcg cgcggcttca ttaaagacgg caacaaaaac cgtctgcgtg
     3241 agcaagacat tcacaaaatc atcgacactt tcacaaacct cgttacagcc gtatggtgca
     3301 tttaagcgaa atcgcagcac aagattacaa ccttaatctg cctcgctata tcgacagcgg
     3361 agaagtcgaa gacctgcaaa atctcgccgc ctatctatct ttatggcggc atacctgcgc
     3421 acgatatgga cgcattggaa gcctattggc aagttttagg ccgtatgaaa aacgagttgt
     3481 ttgccgaaca cgatggccac tttaccacta tacaacggaa tcgattgcaa atctttccca
     3541 ctctcaacag cttaaaatcc tgcgggattg gtgtggaatt tagggctaat ctagtacagc
     3601 cccaaattta atccactata aaatcgaaag cagccaaatc aaagcccata tattggcgca
     3661 ccccgattac gccgccttca aagccggaca cctggcaaag tttgccgcgt ggcacactca
     3721 aaacgacctt gccgccatcc aaccgggcag gcttatccgg aaatggagcg aaagcctgct
     3781 ggacgcgttc aaacccggca gcctgattga agaatacgat ttctaccaaa tcctgacgga
     3841 ctactgggcg gaaaccctgc aagacgatgt ttatctcatc gcccaagatg gctggaaggc
     3901 ggttaaaaac ctggccgaaa tcaccaaaga aagcgatgaa gccgcgaacc tgaccgtcgt
     3961 ctttgaggaa accgaaaccg acaaaaaagg caaagccaaa accaagcgca tcagcaaaaa
     4021 ataccgcagc gaagtcatcg cccccgagct ggttgcccgc cgctactttt cagacggcat
     4081 cgccaagctg gaagaaaaac aaagcgagct ggaacgccta agccaagaat tggaaaacca
     4141 catagaagaa cacggcggcg aagagggtgc gctgaacgac gtattggatg caaaaggcaa
     4201 actttccgcc aaacttctga aaaccgcatt ggaagaaagc ggcatagaag aaggcgaacg
     4261 ggctgtttta caaaccaccc aaacactgat gacgcaggaa aaagccgcga aagacgcagt
     4321 caaaacccaa atcgaagccc tgaaccttgc cgtattcaaa caattcggcc gactttccga
     4381 agccgaaatc aagcagcttg ccgttcaaga caaatggctt gccgatttac aaagtcgaat
     4441 cgaaaatcgc ttggaaaaca gtattcagca gcttatcagc cgcttgaaca cgctggaaga
     4501 ccgctaccgc agcccgatgg ccgagcttgc ccgagaagtg gaaaagtggc aaagcaaagt
     4561 caatgcccac cttgaaaata tgggttttgg aggctgaaat ggcggcacag acaggctata
     4621 aggcgagcgg gttttgagac ctttgcaaaa ttccccaaaa tcccctaaat tcccaccaag
     4681 acatttaggg gatcgcggtt cgggtgtccg caccgcttaa tacgtcgtcg tccacgaact
     4741 gacccatttg ctcgaacgcc atcgcaacgc ccgttttatg gcgcatatgg acaactttct
     4801 cccaaactgg caaagcatca aacaacagct taatgccttg gagttatttg cacaaatata
     4861 taatttaaca taatatacat tatgcgaact atcggaaaca gttgtacgtg tccctgtggt
     4921 ctttccaagt aggaaaatta aagtatggcc aatgcggctg aatgtatagc ccggagcatc
     4981 cgcgtatccg aaggtactga acgacatgcc ctgcatccct ttcgacgctt ccatccagcc
     5041 ggtattggga aatacgttga ccttcaatat aatatacagg cagccgacac acaggatatg
     5101 ccgctgcttt ttcatcattt cttctgtcaa atccttggaa cggtcgattt gaaaacacgg
     5161 ctttacatac gccccagttc cctttgcagg gcttgaatat tttgctgcct gtccaataca
     5221 ttgctttgta atgcatttat ttcttgatgg ttgatgttgc cgccctttgc cagacgtgct
     5281 tgtgataaca ttttttgggc ttcagtcagg gctttgcgtt cgttgctcaa ttctgcttcg
     5341 agaatggagc gtctgctgtt gtttgagggt gcttgttgcg gcggcggcgt attggatttt
     5401 gccggcttgg atactgtttt gaccggggct ttatatttga caacctgtcc gccgtttgac
     5461 ggtgatgata ccggttcggg cgtttggggc gggatatagc gttcgctgct gtagttgccg
     5521 attgggggca aatcggttga gtggcagctt ttggacggct tggtggtgta aacggtttct
     5581 ccgttgattg tgcaggtgta gattttggcc gcattcgcac ccaatgggct tgaaatcagg
     5641 gaaaagttga ttaggattaa ggggagtttt gatttcataa tgtgcttgat gctcggataa
     5701 ttatttgatt ttttggtatt ttttataatg ctttcttggc gttttacggg cttttctttt
     5761 cggttgtttg cttttgattt tctttcgggg ctttggcagc ctgcttgttc tttttcccgg
     5821 caggtttttt gtttttcttt ttactttcta tgtgtatttt ggcttcttaa ctgagttttt
     5881 taattttcag gcggtatccg cctccctgat ggctgctgat tttaggtaaa tccgcatcgg
     5941 cgcacgatcc tgctggggct gatgtatata cgcttttgcc atttgagttg caatggtata
     6001 cggaggcttg cgccgccgcg ccggaaaggg acaggagacc caaggcggca aaaagtctga
     6061 tgtttatacc ggtaaaaggc ggtaataacg cccgaattat accgttattg gcaggcaaag
     6121 ataagcaccc tgcccgcgct tctttatcgc tcggcaaact gtttctcgat ttcagtttca
     6181 atccgttcca attcttcttg acaagccagc caaacctctt cgatttgggc aagttgtgtt
     6241 ttgacttttg ccagctggga taaggtattt tgcaattttt ctttgtttgc ttcaaggtaa
     6301 gcgtcttctt gtgctaaaaa tgcttcacat gccgtctgaa tttcggaaag ctgcgccatt
     6361 tctttttcgg cacggtctat tttctgctgt atcggcttgc cgcgtcgggc tttttcctga
     6421 cggatttgcg cttcgatgcg cttggtgtct ttgcggcttt ggctttgtgc ggatgctgcg
     6481 ggtgcggcgg cggcgttttc ctgtgccaaa cgccattggc ggtaatcgtt caaatcgccg
     6541 tcgaagttct tcagacggcc tttgtcgatc aggaggaagc tgtcggtagt cgcttcaagc
     6601 aggctgcggt cgtgcgatac gatgattaag gcgccttgga aactttgcaa cgcgagcgtt
     6661 aaggcgtggc gcatatccaa gtccaaatgg ttggtcggtt cgtcaagcag caacaggttc
     6721 ggcttttgcc agataatcat ggcaagggca aggcgggctt tttctccgcc ggaaaaaggt
     6781 tcggttttct gtaacgccat atcgccaaca aaattgaagc cgccgaggaa atttcggatt
     6841 tcttgttcgc gtacttcggg agaaagctgc tgaatatgcc aaacagggtt ttggtcggcg
     6901 cggatggtat cgagttggtg ttgggcaaaa tagccgatat tgagtttttc ggaacggacg
     6961 atgctgccag agagcaaatc gattttgccc gccaaggctt tgataaatgt agatttaccg
     7021 ctgccgttga cacccaataa accatagcgc gcgccgcttt ccagcgacag ggtaatgtcg
     7081 tgcaaaacag ttttgccttc gtaacccaaa tctgcgtgtt ccagcttcag caaaggattg
     7141 ggcagatgct cgggattgta aaactcaaag gaaaactcgc tgtccaaatg cgcgggagcg
     7201 atgcgttcga gctttaccaa agccttcatg cggctttgcg cctgaacggc tttggtggct
     7261 ttggctttga agcggtcgat aaaggattgc agatgtttga tttgcgcctg ctgtttgaca
     7321 taggcggctt gttgctgcgc gagacgctgc gcgcgttcgt tttggtaaaa atcgtaattg
     7381 ccgccgtatt gcgtgagctt ttgctgggac aattcgatgg tttgggtggt tgccgcattg
     7441 aggaaatcgc ggtcgtggga aatgatgatt tgcgtgcagg gtaaagaggc aaggtggttt
     7501 tccagccaca agacggtttc caaatccaag tggttggtcg gttcgtccaa aagcagcaaa
     7561 tcggcgcggc aaatcagggc ttgcgcaaga ttcaagcgca tacgccagcc gccggaaaag
     7621 gatttgacgg ggcggctgtg ttcttcttgc gaaaaaccca gcccgttcaa caattttgcc
     7681 gcgcgggccg gcgcggtata agcgtcgatt tcttccaatt tggcatgata ttccgcctgt
     7741 ttcataccgt cgttttgcgc ttccgcctgc ctcaatgccg tctgaagggt ctgtaactcg
     7801 gcatcgccct gcaaaacgta atctaaagcg gaaatatcca aatcgggcgt ttcttgggaa
     7861 acggaagcga gccgccagtt tttcggaatc gagacatcgc cgccgtcctg agtgatttca
     7921 cccttgatta aggcaaacag gctcgatttg cccgtcccgt ttttgccgat caaaccgacg
     7981 cgctgaccgg gattgacggt agcgttggct ttgtcgagca ggactttcaa accgcgttgc
     8041 agggtgaggt ttttgatttc aatcataacg gaaacatcgt cgggcgggaa aagcccgtat
     8101 tttacctgaa agtcagtgcc gatgccgtct gaaacgggaa atttacggct gaagccaagc
     8161 ccaagccctg cgcccttccg agtgcaggaa aaccaatgtc ctgaatgccg aatcggtatt
     8221 catacattcc acgccgattc cgattcgaga aaaatccgcc atgattttgg gatggataaa
     8281 ctcctgagcc gcgcccgtcc cgataatcaa tatttccaga tagtcaacag gtttgatgtc
     8341 ggacaacagg ttttccggag tcagatcgga caaggttcgg cattgcgaca ggcagaccga
     8401 atccttatgt acaagcacgg gtttatggaa actttgcccc gccagccgga ttccgcccgc
     8461 accgcattca tattccgcaa actgtccgtc tatcggattt tcttcaaaca acattttttt
     8521 accccgttgc cgcatcatct acaccgaaag gggtgcaaaa tcaggcgaat tcatgtagga
     8581 ttggcagatt tcatctgacc cgcctgccga tttcagacgg catttgattc aaagtgcggc
     8641 acaattatat cggcagcgga tattttcgtc tttcaatatt tacatttcag tcggcttaca
     8701 aggagacaca atgaagccag taaacatcgg tcttttaggt ttgggtacgg tcggcggcgg
     8761 tacggctgcc gtgttgcggg acaacgcgga ggaaatttcc cgccgcttgg ggcgcgaagt
     8821 gcgcatcagt gccgtatgcg acttgagcga agaaaaagcc cgccaaatct gcccgtccgc
     8881 agcctttgtc aaagatccgt tcgaactggt cgcgcgtaaa gacgtcgatg tcgtcgtcga
     8941 attgttcggc ggcacgggca ttgccaaaga tgcggtgttg aaagccattg aaaacggcaa
     9001 acacatcgtt accgccaaca aaaaactgct cgccgaatac ggcaacgaaa tcttcccgct
     9061 ggcggaagaa aaaaatgtca tggtgcaatt tgaagcggca gtagcgggcg gtatcccaat
     9121 catcaaagcc ctgcgcgaag gtttggcggc aaacaggatt aaatccatcg ccggcattat
     9181 taacggcacc agcaacttca tcctctccga aatgcgcgaa aaaggcagcg cgtttgccga
     9241 tgtactgaaa gaagcgcagg cattgggtta tgccgaagcc gatccgacct tcgacatcga
     9301 aggcaacgat gcgggccata aaatcaccat catgagcgca ctggcattcg gcacgccgat
     9361 gaacttttcc gcctgctacc tcgaaggcat cagcaaactc gacagccgcg acatcaaata
     9421 cgccgaagaa cttggctatc gcatcaaact gttgggcatt acccgcaaaa ccggcaaagg
     9481 catcgagctg cgcgtccacc ctaccctgat tcccgaaagc cgcctcttgg caaacgtcaa
     9541 cggcgtgatg aacgccgtgc gcgtcaacgc cgatatggtt ggcgaaacct tatattacgg
     9601 cgcgggcgcg ggcgcattgc cgaccgcttc cgccgtggtt gccgatatca tcgacatcgc
     9661 ccgcctggtt gaagccgata ccgcccaccg cgtaccgcat ctggcgttcc aacccgcgca
     9721 agtccaagcg caaaccatcc tgcctatgga cgaaattacc agcagctact acctgcgcgt
     9781 ccaagccaaa gacgaaccgg gcacgctggg gcaaatcgcc gcgctgttgg cacaagaaaa
     9841 cgtgtccatc gaagcactga ttcaaaaagg cgtgattgat cagaccactg ccgaaatcgt
     9901 gattctgacc cacagcacgg tcgaaaaaca catcaagtcg gcaatcgcag ccatcgaagc
     9961 actggattgc gtggaaaaac cgattaccat gatccgcatg gaaagcctgc atgactgagc
    10021 cgaaacacga aatgccgacg gaagagcagg ttgccgcgcg caaaaaagca aaagccaaaa
    10081 tccgcaccat ccgcatttgg gcatgggtca ttttggcgtt gctcgcttca accgccctgc
    10141 tctcccaatg cgcgatgtcc aaaccgcagg caaaacagaa aattgtcgag tcttgcgtga
    10201 agaatattcc gtttgccgaa aaatggcaaa acgatttgcg ggcccgcggt ttagattcaa
    10261 acaatacccg ccttaccgtc gactactgca aatgtatgtg ggagcagcct ttggacagat
    10321 tgagcgagaa acagattagt tccttcggca aactcggcgc acaagaacag cttgacctgc
    10381 tcggcggcgc aaatgccttt gaaacgcgag acaagcagtg tgttgccgat ttgaaatcag
    10441 aataatgtgg accgataaaa aagccgattc tttaaagaat cggctttttt cataaaaaac
    10501 ggcttacagt gcgtctttca atgctttacc tgcacggaat ttaggcgttt tggcggcggc
    10561 aatggtcaga ggctcgccgg ttttggggtt gcggccttgg cgttccgcac gttcgcccac
    10621 gtagaaagta ccgaaaccga ccaaagtaac ggtgtcgcct tgtttcaggg cggtggttac
    10681 tgcattggta gtggcatcca aagctttttg tgcggcggct ttggaaatgt cggcttcttg
    10741 agcaatcgct tcgatcaatt cagacttgtt cacaatcagt cccttcctgt cttaaaaaat
    10801 gatgaaatgc ccgaatactc ggggtttgta ctgcttgagc aactttcgct ttatagcaat
    10861 tctgaaattg ccgtgtcaag caaaaaatac ggaatcaccc tatttgacag gctttcagga
    10921 cgaaaccgca tttttacaac acatttcctg cgtttcaatg tttggttgcc ctgctgcggg
    10981 gttttggttt tgaagcggat tccgccaccg cttccgcacc agaaggttct gcccaaggct
    11041 caggctggct ttccaaaccc agagccaata cctcgtctat ccatttgacc ggatggatgg
    11101 tcaggccggt tttcacgttt tcagggattt cttccaagtc tttgaagttg tcttttggaa
    11161 ttaaaacgtg tttgatgccg ccgcgaagcg cagccaacag tttttccttc agaccgccaa
    11221 tcggcaggac ttcgccgcgc agggtaattt cgcccgtcat cgctacatcg gcgcgtaccg
    11281 ggattttgga aaatgcagac accatcgcca aagtcatggc aatgcccgca ctcggaccgt
    11341 ccttcggcgt tgcaccttcg ggaacatgga catggatgtc ttttttctcg taaaaatcag
    11401 aagccaagcc cactgattcc gcgcgggagc ggacaaccga ccacgctgca gacacggatt
    11461 ccttcatcac atcgcccaac tggccggtgc actgaatcac gcccttaccc ggcaatgctg
    11521 cggcttcgac ggtcagcaat tcgccgccga cttctgtcca cgccagaccg gttacttgtc
    11581 cgatacggtt ttcgctttcg gcaacgccgt aatcgaagcg gcgcacaccc aaatagtcgt
    11641 gcagattttt ctcatttact ttaaccgctt taggtttggc tttgctggtt ttcttggttt
    11701 cagacaacct cttcttatct tcgtccaagg taatctgcat caccaccttg cggcagattt
    11761 tggcaatctc gcggtcgagc gaacgcacgc ccgcctcgcg ggtgtagtaa cggataatat
    11821 cgcgcaccgc gctttcttcg acgagcaatt cgccttcttt cacgccgttg cgcttcattt
    11881 gcttcggcac gaggtactgc atcgcgatat tgattttttc gtcttcggtg tagccggaca
    11941 gacggatgat ttccatacgg tcgagcagcg gggtcgggat attcaggctg tttgaagtcg
    12001 caataaacat cacatcgctc aaatcgtaat ccacttcggc ataatgatcg gcgaacttgt
    12061 tgttttgctc gggatcaagc acttcgagca acgcgctggc gggatcgccc cggaagtcgc
    12121 tacccaattt gtcgatttcg tcgagcagga acaatgggtt ttttacgccg gcttttgcca
    12181 tattctgcaa aatcttaccg ggcatggagc cgatataggt gcggcggtgt ccccggattt
    12241 cgctttcgtc gcgcacgccg cccaaagcca tgcggacata tttccgcccc gttgctttgg
    12301 cgatggattc gcccaaagag gttttgccca cgcctggagg gccgaccagg cacagaatcg
    12361 ggcctttgag tttgtccata cgtttttgga cggcgaggta ttccaaaatc cgttctttga
    12421 ctttttccag gccgtagtgg tcggtatcca gcaccaatcc ggctttggcg atgtctttgc
    12481 tgacgcggga ttttttcttc cacggcagtt cgagcagggt gtcgatgtag ttgcgtacga
    12541 cggtggattc ggcagacatc ggcggcatca ttttgagctt tttcagttcg gacaggcatt
    12601 tttcttccgc ttctttgctc atccccgcct ttttgatgcc tgcttccaag gcatccagtt
    12661 cgccgttttc gtcttcttcg cccaattctt tgtgtatcgc tttaatctgt tcgttcagat
    12721 aatattcgcg ctgggatttt tccatttggc gtttgacgcg tccgcgtatg cgtttttcgg
    12781 cctgcataat gtcgagttcg gattccagct gtgccagcag gaattccatc cgtttgccga
    12841 tttcgggaat ttccaaaatc tgttggcgtt gcgccagttt caactgcaaa tgcgctgcga
    12901 ccgtatcggt tagccggctg ttttcggcaa tgccgttgat gctgccgata atttcggcgg
    12961 ggattttttt attgagtttg gcgtattgtt caaactgcgc caacagggtg cggcgcacgg
    13021 cttcgaggtc ggtattgccg cccgtgtctt cttccacgac cgcctctata tgggaaacga
    13081 acagaccgcc cgtgtcttcg atggtcagaa cacgtccgcg atacagacct tcgaccaata
    13141 cttttaccgt gccgtccggc agtttcaata cctgtaagac ttgtgcgacg gtaccggtct
    13201 gatacaggtc ggcggcaacc ggttcttcta gcgccgcatc ggtttgtgcc aataggaaaa
    13261 ccggttcctc gcgggtaatg gcgttttcca gtgcggcgat ggatttcggc ctgccgacaa
    13321 acagcggcag aaccatatgc gggtaaacga cgacatcccg caaaggaagg gttgccaagg
    13381 cggcatattc ctcaaaatgc ttttcttttt gtgtcatagg tactctcttg tgtctgacag
    13441 attgccgatt ttcgcgtaca ttggggttga aggtattatt tcaagcatat gtggtttatt
    13501 tatggagttt gatgcgatgc cgtctgaaac attccggctt cagactgcat gggcttggaa
    13561 agacaaggcg ggaacaaaaa actgttctgt gttgccgctc cttgctgtac catccgtatg
    13621 gtttacggtt ctgccgccct attttcaaaa catgacgcag gtatcccatg tcttctttta
    13681 tttttcccga taacggggcc gaatggcgca acgaaagtgt gcaaaagccg cccaaaggtt
    13741 ggcattatgt ccgcgaaagc ggtgcagacg gcattttgaa ggctgcctat caaaatattg
    13801 caactgtctg gcagggcgat ttccacaatg ccaaacaggt gctttctgca atgaagaaga
    13861 gggctcgcaa acctgccgcc gtccgttccg atgcggatat cgccgccctt ttccatgccc
    13921 accgtatgaa gcaggcgcag cagagccgta ttctgaatat gcttgccgtt gaaatccgcc
    13981 ccggttttgt gttggacaac aaacgcgcgc ccgatatacg cgccgccctg ctcgacgtgt
    14041 acggagaggc ggacggcaaa ccgtttttcc tgccgctcaa tctgctgctg gggtttatgg
    14101 gtgcgcacga gtggcataag aaaggggttg ccgttccgca gctgggcggc agcatacacg
    14161 ttcctttcgg cgtattctcg ccgttgcgcg gcgaatacct cgacctgctc gcccatgcgc
    14221 cgtcaacggg ttttcagacg gcattcgata tcgggacggg ctcgggcgtg cttgccgcca
    14281 ttttggcgaa acagggcatt ccttccgtca tcggcacgga taccaatccg aaagccgtcg
    14341 cctgcgcccg tgccaatatt gcccgtttgg gctttgaaaa acaggttgag atacgggaaa
    14401 ccgatctgtt tcccgaaggg tttgccgatc tgattgtctg caatccaccc tggcttcccg
    14461 ccaagccgac ttccgccgtc gaatccgcgt tatacgaccc cgaatctgcg atgctggctg
    14521 cgtttttgcg ggatgcgccg aaacatctga atcccgacgg agaaatccgc ctgattattt
    14581 ccgaccttgc agagcatttg gggctgcgcc ctgccgattt tttggaaaag gcatttatcc
    14641 gggcgggttt gcgtgttgcc gatatgatga aaaccaagcc gaagcacaaa aaagccgcga
    14701 atccgagcga tccgcttgct tttgcgcgaa cccgggaaac cactttccta taccgtttga
    14761 aaaaggcata aggggcggcg gcgcggcatt cgggcggatt attcttgtga aaatacccgc
    14821 tcgagcatac tgcccaatgc cgtctgacgc gttttgacag tggcggcagc ttgccggaag
    14881 gtttcttctc cgccgaagaa tacgaacttc tccctcgcgc gggtaatggc ggtatataac
    14941 agctccttac tcaatccgga caatgcatcg tccccttcgt ccgaaggtgc ggcggaaggc
    15001 ggcagcagcc agacttcccg atattccgaa ccttggcttt tgtggacggt catggcgaat
    15061 gcgggttcga aatcgggcag gcagcttacc gctacctttt taaatccgtc cgcatcggca
    15121 aaataggcgg caaggctgcc ctgccgtccg acatcttcca taatcaatcc gatgtcgccg
    15181 ttgaacagtt caagcgcgta gtcgttctgt ctgatcataa tcggttctcc ggcgaaatag
    15241 gcctgatgtt ccggtatgtt cattttgcgg cgtacatggc tgcaataggc ttcgttgaag
    15301 tcttccgcat cctgccgcca agctgccagg accacgatat ccgagatgcc tgcgtatgcg
    15361 gcttcgatat tgccgtcttt taccgcctgc caataggctt tgtgcgcccg gtacaacctt
    15421 tcgactcgag cgttcggact gcattccgaa tgttccagtt cgtccggaaa ccggtcaaac
    15481 aatgcccacg ccccctcatc gcccgatacg gcggcacggg caaggcagcc gatgccactg
    15541 ttgtcgccga agcggtggct gaacgacaga tgggcggtgt tttgcgccaa cacgggcgga
    15601 tttgcgctga cgctgaaacc gtgttccgga aggaagccgg ccagcctttg gtgcgtttct
    15661 ccgtccaaaa cggttttgtg cgacaaaacg gacagcaccg ccccgattcc gacggacggg
    15721 agctggtttt catcccccag cagaatcacg cgcgcgccgg ttttgaccgc ttttaaaagt
    15781 tgcaacatca atgcggtatc caacatggag gcttcatcga taaccaatac gtccaacggc
    15841 agcgggtaaa cagggttgaa cgccgcctgc attttgggcg ggcgcagctt cagcagtcgg
    15901 tggacggttt gcccttccag tttgagcaaa tggcggcgga tggcctccgg cgcgtcaaaa
    15961 ccgttgattg cacggtgcag cgcgcgcgcc atatgtgccg ccgctttgcc tgtcggtgcg
    16021 gcaagcgcga tgttgggaag attttcgtct tcaccgcaaa tcagcgccag cagtttggca
    16081 accgttgtcg ttttgcccgt tcctggcccg ccggtaatca ccataaaaga ctgcaacagt
    16141 gccaaggcgg cggcatcgcg ctgcccttcg ctgcccgtgc cttgaaacca ttttgcgagg
    16201 ttttgccgcg cgcctgccgc gtcgggggcg gacgtgccgg ctgccgccaa gcgttttatc
    16261 tcggcagcca aatcgtattc caactgccac atcctgccca aaaacagcct tctgccttcc
    16321 aaaatcaaag gcgcggcgga tgttccgacc acgggtgcga gtgccgacag cgcgtcagcc
    16381 tcgccaccgc tcaaacggat aaacgaatga ccgttttgca atgcctgaaa caggcgttcg
    16441 gtgcagtttg caagcacttc gctgcctgaa cccgcatagc gtgccaaaaa ccagattgcc
    16501 gcccttgccg ccgcttgggc aaattcatct gtctgccgtt ccattgtatt ccttatccaa
    16561 atgccgtctg aaggcgtggg gcttcagacg gcgcggtgtt gtttcggctg tttaggcgtt
    16621 tgcgccctgt ttggggtgca ggctgccgtc tttcatgacc atcacgcgct cgaagcggcc
    16681 ggcgagttcg tcgtcgtgcg ttacgaccac cagccccgtt cccaattctg ttttcagttc
    16741 cagcatcata tccaaaacat tcctggcgtt cgcacgatcg agattgccgg tcggttcgtc
    16801 ggcaagcagg catttgggtt gcgtaaccaa ggcgcgtgca atggcggcac gctgccgctc
    16861 accgccggac agttcgcccg cgcggtgcgc cgaacggtgc ttcaatccga ccttttccag
    16921 catcgccatt gccgtttctg ccgcctcttc ccgttttttc ttgccgatca gaagcggcat
    16981 catcacgttt tccagtgccg aaaattcagg cagaagatgg tggaactggt acacgaaacc
    17041 gagatggcgg ttgcgcagga tgcccagttg tcgctggctt aatgtacgca aatcctcgcc
    17101 catcagcagc accctgcctt cagacggcat atccagcccg cccaaaatat gcagcagcgt
    17161 cgatttgccg ctgcccgaag aaccgatgat gccggtactt tcccccgcga ggatttccaa
    17221 atccaagccg tgcagcaccc gaacgtccaa accgccgtca cggtagcgtt tgcccacgcc
    17281 ttcgcatttc aaaatcaact cactcataac gcaaagcctc cgccggttgg gtttttgacg
    17341 cgcgccagct cgggtagagc gtcgccacga aagacagtcc caaagaaatg caggcaatca
    17401 gggcaacgtc gcccatatcg acatcgctgg gcaggtagtc gataaaataa acctgcgaat
    17461 tgataaggtg gacaccgagc aggttttcaa aaaacgccac gactctgccg acgttccaac
    17521 ccaaaagcac gccgcagacc acacccgcca gcgtgccgaa aaagcctgaa aacgcgccct
    17581 gcaccataaa aatcttcatc acgccggcag gggaaagacc caaagtccgt aaaatcgcaa
    17641 tgtccgcctg cttttccgta accgccatca ccaaggaaga gacaaggttg aacgccgcca
    17701 cggcgataat cagcgtcagg atgatgaaca tcatccgttt ttccaactcg accgcctcaa
    17761 aatagcttcg attgctgaac gtccaatcgc gcacccaaac cgtatccctt tgcgcctccg
    17821 gaatcagctt tgccgtcaag gcgggggcgt tttgcgggtc ggcgagtttc agccgcagcc
    17881 ccgcaacttc cttatccaag cggtacagta cgcgcgcgtc ttggatatgc gtcatcgcca
    17941 aggagttgtc cacttcgtaa acacccgtct taaccagacc gaccacggta aactgtttca
    18001 acctcggtac gactccggcg ggcgtaacat tgccctccgg cgtgatgacg gtaactttat
    18061 tgccgacttc cgcccccaaa gcctccgcca agccgacacc gaggataatg tcaaactcgc
    18121 ccggaatcag gtcttcaaat ttgcctgccg gcattttgtc gccgtattcc accactttgc
    18181 gctcttcaga cggcaaaatg ccgcgcatct gcacgcccct gatttcgccc gcattggcca
    18241 gcaatgcctg attggaaaca tagggcgcgg cagccaaaat acctttgcgg ttttcggtaa
    18301 atcgaagcag gttgcgccaa tccgtatccg tattgtcgat atagccgatt tcggcgtgcg
    18361 gcgcgacatt caggagctgc ccgcgtattt ctttctgaaa gccgttcata accgacaaga
    18421 cgacaatcag cgcggttacg cccaaggcga ttccggcaat cgaaaccatc gtgataaacg
    18481 acataaagcc gttgcgcttt ttcgccctga gatacctcaa gcctatccaa gcctctagag
    18541 aaaacataac gctaccttaa aaatgtctgc aaacgtgccg ccccggacgg cggtttgggg
    18601 gcggcggcaa aagtttattg taccgtaaaa cccaggcagc gtccgaacgc ccgagtgcgg
    18661 gggacggggc ggcagagcgg gcggaaaact tgcacaacgc gtcaaactgc cctatccttt
    18721 ccttcagaaa aaccgtttct tgaggaaaac aatgaatatc cgaactgctt ttgctttgtg
    18781 cgccatcgcc ttatccgccg ctgcggctgc ctacgccaaa gaaatcaaaa tcgatgccaa
    18841 caacacgcct tattccgaag ccgacgcgca aaagctggcg gcaacggcag tcggtatggg
    18901 tgttaaggaa cctatcagcc tgaacggcgg cagcggcagc attaccgtgt ccggcagcag
    18961 cgcgacgcag tgcgtgttca aagtcggcaa cggaggcgca ttgcagattc aagggctaaa
    19021 ctgcaagtaa accgcccgga aaaatgccgt ctgaaggctt cagacggcat tttgcattgg
    19081 cggcgttatg ccccgccttc tttaatcagg cggcgttcgt acaccgcctg cgccagcgtt
    19141 cccgcatcga catattccaa ttcgccgccc aaggggatgc cctgcgacag cctgctgact
    19201 ttgtaaggca ggtttttaaa aaactcggac aggacatacg ccgtcgcatt gccttctgcg
    19261 gtaaaagcgg ttgcaataat gatttcttcg acttccccgc cgcccagccg ttgcgccagc
    19321 ctgtccaatg cgatggcgga tacgtccatt cccaatgccg tattgatttg ccccatcagg
    19381 acgaaataca gcccgtcgtg gcagtttgcc acttccatat tcgacacgtc ggcaggcata
    19441 tgcaccacca tcagccgccg cccgtcgcgt gtttcatcgg cacaaatatc gcacaatccg
    19501 ccttcgcaaa acgtgttgca catcgcgcaa tggtgaacct gcttcaatgc cgtctgcaag
    19561 gcatccacca gtttttcagc ctctttgcgc ttgtgttgga gcaaatgata cgctatccgc
    19621 tgtgccgatt tcggcccgac gttgggtaaa accttcagcg cgtcgatcaa tccttggaag
    19681 gcatcttgtt ttttgtggct catcatattc cgccgtatgg gaaaacggcc ggaatattcc
    19741 gaccgttatt ttgtcaacaa aagtgtcaat tactgaccgc cgccgttgtc gaccgattgc
    19801 gctcctttgg tctgtttgat tttgccgttg aaataacgta tcaacaagtc gaaggtattg
    19861 gcagactgct gctgcgccaa agcctgtttt gcaagcggaa gctgtgcggc gatatcatcc
    19921 ggcggggtta tagcctgtac ttcgacaatc acgggtgccg gcagaccggt cagcctgacg
    19981 taggcgggtt tgccgtttgt cggttttgct ttcagcagtt ccgcataagc ctcgggcggc
    20041 atggactgcc ttgcctgctg cgcgcccaaa acggacactt ccgaccattt cacatcaact
    20101 gccttgccgc cgttcagttg ggtaagcacg tcttttgcct tgttttcggc aagtttggcg
    20161 gcttcggcac ggatataagc ctgacgcacc gcatctttgg cttcggcaaa cggcagggtt
    20221 ttctcttcgc ggacttcttt ggcgcggacg acccacgcga tttcattatt gatagacaac
    20281 acttcggaat tgtgtttttt cttcaatacg tcgtcgctga atatggcatt gatcaggttt
    20341 tcaggcagtc cggacatttg cgcgtcctgc ctgctcagcc aagtttcttg ggtttcgact
    20401 ttcaaactgc tgtttttggc ggcttcggca agcgaagcgg gatggttgaa cgcgtcatcg
    20461 ctcagctttt cttttgcctt attgaagtcg gcaaccgcct ttttcatttt caattcgttt
    20521 tcgacggcgg ctttttcctg ctcgaaagaa agtttggctt catttgccgg caaacgcgcc
    20581 acgcgctctt caaacgcatt tttcacttcc gtttcactga cggtttgctt gtctgcaaaa
    20641 tccttcagat tcaaggcgac atattccaat ttgaccgcct gcggcagcag atagtctttt
    20701 ttgttcgcat tataaaattt ctgcaaatcg gcttcagaca ctttgacttg ggcgatgaac
    20761 tcgtcggggt tgaaagtgtg cgaacggatg gtgcggttga cctgcgtcag cctgatcagc
    20821 tgttccgcct gcgcgtcgcc gaccaatacg ccgttttgga cgaggtttac caaattctgc
    20881 aaggcaaact gatcgcggat ttcttcgaca aactggtctt cagacatatg gcgttgggaa
    20941 aggtagcggt ttaaaagcgc gtggtcgaat ttgccgtttg cgtcgtggaa attgggatcg
    21001 tccacgataa tttgcttgat ttgttcggaa gaaaccgaaa tgcctaacag cttcgcgccc
    21061 tgtttcaggt aggcgcgttg cagcagggat tggaacaccg cgtcgcgcga agggccgccg
    21121 ccgtccgcct gttcgttctg tatggcgttg ttgatggagt ggtcgctgat tttttcgtcg
    21181 cccacttgga cgatgtagtc ggcacccgga tgggataccg tgctgacccc gaagccgacg
    21241 aaggttaatg caatcaggcc caaaaggact tgggcgggcg ttctgtattt ttcgatggaa
    21301 tggaacatat tttaaatcgg gatatagaat gggaaattca agtcgggtat tgtaacggtt
    21361 tttatccctg tctgcacggg gcttgccggt tgaagatgcc gtcgtaggtt tcttcgctga
    21421 agccggcgta aaccttgccg ccgcactcca atacgggacg cttgatcagg ctcggcattt
    21481 cggacatcag tttgacggcc tccgctgtcg aggacagggc tttttgctgt gtttcggcat
    21541 cgagtttgcg ccagcttgtc ccgcgtttgt tgagcagggt ttccaaaggc acttgttcca
    21601 gccacgagca gatttccgct tcagacggca tctgtttttt gaaatcccga aactcaaact
    21661 ccaagccgta tccggcaagt cggtttttgg cttttttgac cgtatcgcaa tttgggatgc
    21721 cgtgaaggac tatcatttgg aaaccttttg tctgaaataa taaaacggat attttactat
    21781 aagtgtctga aaatttgccc gtctgtttca gacggcgggg cggttatgtt acaatccgaa
    21841 aattcgaaaa atttaatctc ttgttcaata aaggctttac caatcatgat ttctaccaac
    21901 ggcatcacca tgcagttcgg cgcgaagccg ctatttgaaa acgtatccgt caaattcggc
    21961 gaaggcagcc gctacggttt gatcggcgcc aacggctcag gcaaatccac cttcatgaaa
    22021 atcctcggcg gcgatttgga acagaccgcc ggtgaagtcg caattgaaaa cggcgtgcgt
    22081 ttgggtaaat tgcgccaaga ccagtttgcc tacgaagaca tgcgcgtgct ggacgtggtg
    22141 atgatggggc ataccgaaat gtgggcggcg atgaccgaac gtgatgcgat ttacgccaat
    22201 cccgaagcca ccgaagacga ctacatgaaa gccgccgaac tggaagccaa gttcgccgaa
    22261 tacgacggct acaccgccga agcgcgtgcc gccgaactgt tgagcggcgt gggcatttcc
    22321 gaagatttgc acaatgcgaa aatggcggaa gtcgccccgg gcttcaaact gcgcgtattg
    22381 ctggcgcaag ccctgttctc caagccggat gtgctgttgc ttgacgaacc gaccaataac
    22441 ttggacatca acaccatccg ctggctggaa ggcgtgttga accaatacga ctccaccatg
    22501 atcatcatct cgcacgaccg ccactttttg aacgaagtct gcacccacat ggcggatttg
    22561 gactacaaca ccatcaccat ctatcctggc aactacgacg actacatgct cgcttccgcc
    22621 caatcgcgtg agcgcgccct gaaagacaac gccaaagcca aagagaaact gcaagagctg
    22681 caagagttcg tcgcacgctt ctctgccaac aaatccaaag cccgtcaggc aaccagccgt
    22741 ctgaaacagg ccgacaaaat caaatcggag atggtcgaag tcaaaccttc cacccgtcaa
    22801 aacccgtata tccgttttga agccgatgaa aaagccaagc tgcaccgtca ggctgtggaa
    22861 gttgaaaaac tggcgaaacg ctttgaaacc cagttgttta aaaacctgaa cttcatcctt
    22921 gaagcgggac aacgcctcgc catcatcggc ccgaacggcg cgggcaaatc caccctgctg
    22981 aaactcttgg ccggcgcgta caaccccgaa tattcagacg gcctgttacc ggacgaaggc
    23041 agcatcaaat gggcggaaaa agccagtgtc ggctactatc cgcaagacca tgaaaacgac
    23101 ttcgacgtcg atatggattt gagcgaatgg atgcgccaat gggggcagga aggcgacgac
    23161 gaacaagtca tccgcggcac tttggggcgt ttgctcttcg gcagtaacga tgtcgtgaaa
    23221 aaagtgaagg ttctctccgg tggtgaaaaa ggccgtatgc tttacggcaa actgttgctg
    23281 ttgaaaccca atgtcttagt catggatgaa ccgaccaacc acatggacat ggaaagcatc
    23341 gaatccttga acatggcgct ggaaaaatac aacggcacgc tgattttcgt ctcgcatgac
    23401 cgtcagtttg tatcttcatt ggctacccaa atcatcgaat tggacggtaa aggcggatat
    23461 gaacactact tgggcgatta cgaaagttac ttggagaaaa aaggcgtagc ataagcgcac
    23521 aaaataccct ccggttgaaa caatgccgtc tgaagccgct tcagacggca ttgttgataa
    23581 ctttaaaata ggaagcatat gcagacttac ctcgtcggcg gcgccgtccg cgattatctt
    23641 ttgggcttgc ccgtcaaaga ccgcgattgg gtggtcgtcg gcgcagacgc acaaaccatg
    23701 ctggcgcaag gcttccagcc agtcggcaaa gactttcccg tgtttctcca tcccgaaaca
    23761 cacgaagaat acgccctcgc ccgcaccgag cgcaaaaccg ccaaaggtta cgccggcttc
    23821 agtttccaca ccgacaaaga cgttacgctg gagcaggatt tgatgcgccg cgacctgacc
    23881 atcaacgcga tggcgcaaga tgcggacggc aagattatcg accctttcgg cggacaacgg
    23941 gatttggcgg caggcatttt gcgccacgtt tccccggcct tcgccgaaga ccccgtccgc
    24001 atcctgcgta ctgcccgctt tgccgcgcgt tacaagtttg aaatcgccga agaaaccata
    24061 aagctgatgc ggcagatggt ggaaaacggc gaagcggacg cattggttgc cgaacgcgtc
    24121 tggcaggagt ttgcgaaagg tttgatggaa aaaaatccgc gcaaaatgat tgaagtgttg
    24181 cgcgaatgcg gcgcgctcaa agtcttgctg cccgaagtca atgccctctt cggcgtgccg
    24241 caacgcgccg actaccatcc cgaaatcgac agcggcatcc ataccctgat gacgctgcaa
    24301 cgcgccgccg atatgggttt gagcctgccc gaacgctatg ccgccctgct gcacgacttg
    24361 ggcaaagcca aaacaccgtc cgacatcctg ccgcgccacc acggacacga cctcgccggt
    24421 gtcgaacccg tgcgcgaagt caatcagcgg ctgcgtgcgc cgaaacattg cgccgagctt
    24481 gccgaacttg tctgccgttg gcacattatt ttccaccaag tcggacagct taaaagccaa
    24541 accattctga acgttttgaa aaaaaccgac gctttcagac gccccgaacg ctttcagacg
    24601 gcattgaacg tctgcattgc cgacacgcaa ggccgtctga accgcgaaca cacgccctac
    24661 ccgcaacgcg cgcactggct cgccttactc gaagccgcca atcaggcgga ttcgggcaaa
    24721 atcgccgccg aatgccgctc gcagggaaaa gcgcacctta tcgccgaaca aatcgaccgg
    24781 gcgcggctgg cacaaatcgc cccattgcaa aaagcgtttc gagcggcgca agacaaaaca
    24841 gaaaaacatt aaaacgtcca atgcagcca
//
LOCUS       DAXHNP010000012        24189 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.012, whole genome shotgun sequence.
ACCESSION   DAXHNP010000012 DAXHNP010000000
VERSION     DAXHNP010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24189
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.012"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..286
                     /locus_tag="ACFM5C_000352"
     CDS             <1..286
                     /locus_tag="ACFM5C_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6068126.1"
                     /translation="DSAYSERWRQIKRHSQYLIGGKLRLWQKRFWEHTIRDEADFACH
                     FDYLHFNPVKHGYVGQISDWRFSTFHRYVKQGIYPHNWGGGNADFSIEYD"
     gene            358..519
                     /locus_tag="ACFM5C_000353"
     CDS             358..519
                     /locus_tag="ACFM5C_000353"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068127.1"
                     /translation="MRWLNLKNSTSVHNTQGIRTKEAVEQGLRGNNRPEKGIGNRWNY
                     DGFIKELAK"
     gene            569..853
                     /locus_tag="ACFM5C_000354"
     CDS             569..853
                     /locus_tag="ACFM5C_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068128.1"
                     /translation="MKVITITLFTSCILSGCYGLEYGMSGGIPHDDWARGSHVSQAKA
                     DAAWKECSDKYMRNGGSGLVEQCMNDKGLIRLSEIRRRQKRAETQRAVIK"
     gene            complement(978..1694)
                     /gene="trmB"
                     /locus_tag="ACFM5C_000355"
     CDS             complement(978..1694)
                     /gene="trmB"
                     /locus_tag="ACFM5C_000355"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFC6068129.1"
                     /translation="MTDTAENQTQNNWQAEHPRSIRSFVLRQSHMTSAQQRAIDTLWG
                     SFGIDYQATPADLDARFGSSRPKILEIGFGMGTATAEIARRLPETDFLAIDVHGPGVG
                     NLLKLIEENHLENIRVMRHDAVEVVENMLQDGSLDGIHIFFPDPWHKKRHHKRRLIQA
                     PFIAKLLPKLKTGGYIHLATDWEEYAQQMLEVLSSFDSLQNTAADYAPTPDYRPETKF
                     EARGKRLGHGVWDLVFKRIG"
     gene            complement(1816..3219)
                     /locus_tag="ACFM5C_000356"
     CDS             complement(1816..3219)
                     /locus_tag="ACFM5C_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6068130.1"
                     /translation="MNNPDLLYHQALERLSQEQYDFTEVRRLLTEAASAGHPAAAFEL
                     AKHLMDADSPHQDREQGMEMLRIAAEQGHPYARYNLAYIQELEGARPETLIPLYRPLA
                     EEGLPEAQVRLMYLLYASRHFEEALKWAKTTAKNNNPHGQYLLAQYCQYGTPPDFETA
                     HLLYREAAAQGLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAEL
                     ILPTAPDEAVYRFQQAAQENDPDAHAALADIYLQGKHLERNHKLALHHAEAAAAERHP
                     EGLRILGDICRYSLGIAPDTEKARHYYRQAAEAGSLSAYQKLISDSALNHPNQYGGIK
                     DSAIRRQRAERLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFG
                     QGMTADYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVGPDNEKACRYLQEAINSGH
                     EQKSFLQELLQQWQNAV"
     gene            complement(3338..5224)
                     /gene="uvrC"
                     /locus_tag="ACFM5C_000357"
     CDS             complement(3338..5224)
                     /gene="uvrC"
                     /locus_tag="ACFM5C_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFC6068131.1"
                     /translation="MPSETVFQVIDMNKETRFPEHFDIPLFLKNLPNLPGVYRFFNES
                     GNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTITRSESEALILENNFI
                     KALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTLKKPNQYFGPYPNSNAVRDSIQ
                     VLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHDSVREASTFLNGK
                     TDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLA
                     LAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPDI
                     IISNFPMPDALKEALESEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQ
                     QHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITT
                     AKPGDDYAAMREVLMRRYGKMQEAEANGETVKWPDVVLIDGGKGQIGVAVSVWEELGL
                     HIPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRK
                     KRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQVEGISKALAETIY
                     EHLH"
     gene            complement(5288..7450)
                     /locus_tag="ACFM5C_000358"
     CDS             complement(5288..7450)
                     /locus_tag="ACFM5C_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6068132.1"
                     /translation="MQQKIRFQIEGMTCQACASRIEKVLNKKDFVESAGVNFASEEAQ
                     VVFDDSKTSVADIAKIIEKTGYGAKEKTEDTLPQPEAEHHIGWRLWLLFTINVPFLIG
                     MAGMMIGRHDWMIPPLWQFALASVVQLWLTIPFYKSAWASIKGGLANMDVLVTIGTVS
                     IYLYSVYMLFFSPHAAHGMAHVYFEAGVMVIGFVSLGKFLEHRTKKSSLNSLGLLLKL
                     TPTQVNVQRNGEWKQLPIDQVQIGDLIRANHGERIAADGIIESGSGWADESHLTGESN
                     PEEKKAGGKVLAGALMTEGSVVYRATQLGSQTQLGDMMNALSEAQGSKAPIARVADKA
                     AAVFVPAVVGIALLTFIVTWLIKGDWTVALMHAVAVLVIACPCALGLATPAAIMVGMD
                     KAVKHGIWFKDAAAMEEAAHVDAVVLDKTGTLTEGRPQVAAVYCVPDSGFDEDDLYRI
                     AAAVEQNATHPLARAIVSAAQTRSLEIPAAQNAQTVVGAGIAAEVEDVGLVKAGKAEF
                     AELTLPEFSDGVWDIASIVAVSVDNKPIGAFALADALKADTAEAIGRLKKHNIDVYIM
                     SGDNQGTVEYVAKQLGIAHAFGNMSPRDKAAEVQKLKAAGKTVAMVGDGINDAPALAA
                     ANVSFAMKGGADVAEHTASATLMQHSVNQLADALLVSQATLKNIKQNLFFAFFYNILG
                     IPLAALGFLNPVIAGAAMAASSVSVLSNALRLKRVKID"
     gene            7589..8539
                     /gene="trxB"
                     /locus_tag="ACFM5C_000359"
     CDS             7589..8539
                     /gene="trxB"
                     /locus_tag="ACFM5C_000359"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFC6068133.1"
                     /translation="MSQHRKLIILGSGPAGYTAAVYAARANLNPVIITGIAQGGQLMT
                     TTEVDNWPADADGVQGPELMARFLAHAERFGTEIIFDQINAVDLQKRPFTLKGDMGEY
                     TCDALIVATGASAKYLGLPSEEAFAGKGVSACATCDGFFYKNQDVAVVGGGNTAVEEA
                     LYLANIAKTVTLIHRRSEFRAEKIMIDKLMKRVEEGKIILKLESNLQEVLGDDRGVNG
                     ALLKNNDGSEQQIAVSGIFIAIGHKPNTDIFKGQLEMDEAGYLKTKGGTADNVGATNI
                     EGVWAAGDVKDHTYRQAITSAASGCQAALDAERWLGSQNI"
     gene            8695..9063
                     /gene="rpsF"
                     /locus_tag="ACFM5C_000360"
     CDS             8695..9063
                     /gene="rpsF"
                     /locus_tag="ACFM5C_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFC6068134.1"
                     /translation="MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGR
                     RQLAYPINKIHKAHYVLMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASPM
                     LGGEKAKNLLSGASEEAAAQ"
     gene            9064..9366
                     /gene="priB"
                     /locus_tag="ACFM5C_000361"
     CDS             9064..9366
                     /gene="priB"
                     /locus_tag="ACFM5C_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030894 - replisome [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HFC6068135.1"
                     /translation="MGFNNLVSLAALIEKVFPIRYTPAGISVLDIILKHESWQEENGQ
                     QCLVQLEIPARILGRQAEEWQYRQGVYVHVEGFLAQKSRRSLMPMLRIQNIQEYKG"
     gene            9373..9603
                     /gene="rpsR"
                     /locus_tag="ACFM5C_000362"
     CDS             9373..9603
                     /gene="rpsR"
                     /locus_tag="ACFM5C_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009120066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFC6068136.1"
                     /translation="MARQSFKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPAR
                     ITGTKAFYQRQLAVAVKRARFLALLPYTDQHK"
     gene            9620..10072
                     /gene="rplI"
                     /locus_tag="ACFM5C_000363"
     CDS             9620..10072
                     /gene="rplI"
                     /locus_tag="ACFM5C_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFC6068137.1"
                     /translation="MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANM
                     KEFEARRAELEAKQAEILADAQARQEKLDGQTITVAQKAGVDGRLFGSVTNADIAAAI
                     VATGIEAVKANVRLPNGPLKAVGEYEVEVALHTDAVAKITVAVVAATE"
     gene            complement(10265..11071)
                     /locus_tag="ACFM5C_000364"
     CDS             complement(10265..11071)
                     /locus_tag="ACFM5C_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6068138.1"
                     /translation="MWHWDIILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQG
                     LAQHPYAQHLAVGTSFAVMVFTAFSSMLGQHKKQAVDWKTVFTMMPGMVFGVFAGALS
                     AKYIPAFGLQIFFILFLTAVAFKTLHTDPQTASRPLPGLPGLTAVSTLFGTMSSWVGI
                     GGGSLSVPFLIHCGFPAHKAIGTSSGLAWPIALSGAISYLLNGLNIAGLPEGSLGFLY
                     LPAVAVLSAATIAFAPLGVKTAHKLSSAKLKKSFGIMLLLIAGKMLYNLL"
     gene            complement(11072..11818)
                     /gene="pssA"
                     /locus_tag="ACFM5C_000365"
     CDS             complement(11072..11818)
                     /gene="pssA"
                     /locus_tag="ACFM5C_000365"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFC6068139.1"
                     /translation="METPTNTPQRSLRQNSIYLLPNSFTIAALFSAFYAITQSMHGRY
                     ETAAIAVFISMLLDGMDGRVARLTNSQSAFGEQLDSLADMVSFGVAPALIAYKWQLWQ
                     FGKIGYSVAFIYCACAALRLALFNTLIGKVDKRWFIGVPSPTAAALIVGLIWVNHSVE
                     KFPAVHWWALGITLFAGLSMIVQIPFWSFKEINIRRQVPFVGMLLAVLLLLLVTWEPS
                     LVLFLFFLGYSLSGYIMAARRFWKKYRKAD"
     gene            complement(11892..12296)
                     /locus_tag="ACFM5C_000366"
     CDS             complement(11892..12296)
                     /locus_tag="ACFM5C_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068140.1"
                     /translation="MANRFQQRKSAYRRLSGKPLFSDGIAANLCGGRKTLSYNLSRFK
                     ISIRSEMQKISFNLLKPANSPKIGKRRPGLNGAPHIPMPSPRYLPASPEMPGNNIHPA
                     KIRNNTPGGRQSQTAPQSIRHQKNKPPPRASS"
     gene            12402..12884
                     /locus_tag="ACFM5C_000367"
     CDS             12402..12884
                     /locus_tag="ACFM5C_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HFC6068141.1"
                     /translation="MMKKILAVSALCLMTAAARAADTYGYLAVWQNPQNADDVLQVKT
                     TKEDSTKSEAFSELEAFCKGQDTLAGIAEDEPTGCRSVVSLNNTCVALAYPKALGALR
                     VDNAVVITSPRFTSVHQVALNQCIKKYGVQGQCGLETVYCTSSSYYGGTVRSLIQNLK
                     "
     gene            complement(12936..14147)
                     /locus_tag="ACFM5C_000368"
     CDS             complement(12936..14147)
                     /locus_tag="ACFM5C_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease family protein"
                     /protein_id="HFC6068142.1"
                     /translation="MNQLKLAVSGAQILFVAFGAMVLVPLLTGLNPALALLGAGLGTL
                     LFQITTKRKVPIFLGSSFAFIAPIIYSIGEWGLPSTMFGLFAAGFMYFVFAVLIRWRG
                     LAAVHKLLPPVVIGPVIMVIGLSVAVAASSMAMGQADGKQVIDYTDSLILSGFTFAVT
                     AIVSVFGSRMMKLIPILIGVASGYVLALLMGLVDTASIAHAPWFAVPHFETPQVNWQA
                     ALFMLPVAVAPAIEHIGGIMAIGNVTGKDYTKDPGLDKTLAGDGLGVCVAGLIGGPPV
                     TTYGEVTGAVMITKNSNPVIMTWAAVFAVCMAFFGKFNAFLASIPMPVMGGIMLLLFG
                     TIASLGVKTLIDAKVDLMLPKNLVIVSSVLTTGIGGMTLKLGSFSFAGVGLCAVLAIM
                     LNSLLPDPKES"
     gene            14370..16808
                     /locus_tag="ACFM5C_000369"
     CDS             14370..16808
                     /locus_tag="ACFM5C_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6068143.1"
                     /translation="MTEKSHKKTAKGRAGSPSPTSARNKKADNGARGNKVSERLKAVK
                     ELQKTETKKARPEHVVNLIGDALWLMGLAATLYLAISLISFDMGDPSWSHSSPVVEDV
                     ANWGGLFGAYVADVGYYLFGWSFWWWIAAACVVLYKNFRLHAKQTENEAYNHKIAAAA
                     LFVLTVFSPVLEYFVLGGKYADSLPVGAGGMVGIRVGAVFAWLLGKSGSLLIILVVLL
                     LSLSLLVQISWLEFLNGAGRAVQNRLSALSGKVMALGKRRPNTKTDGVDTQNTRRMVK
                     EAKNITAKPVALPEGSSSNRKSVAVSVAPPPKIQVSLFEDDEPRQAGEYHKPTLNLLR
                     IPDSEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGVKGSQ
                     IVALSKDLARSMSLQSVRIVETIAGKNTMGIELPNDKRQDVMLSEILSSPVFAEAKSK
                     LTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPDEVRFIM
                     IDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLEGFN
                     QKVEAAKAAGKPLLNPFSLNPDEPEPLEKLPLIVVVIDELADLMMTERKAVEQQIARL
                     AQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELL
                     KYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETAN
                     IVNPNADSDELFDQAVAYVLESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPTD
                     LNGSRKILAHKDHL"
     gene            17016..18326
                     /gene="tig"
                     /locus_tag="ACFM5C_000370"
     CDS             17016..18326
                     /gene="tig"
                     /locus_tag="ACFM5C_000370"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFC6068144.1"
                     /translation="MSVTVETLENLERKVVLSLPWSEINAETDKKLKQTQRRAKIDGF
                     RPGKAPLKMIAQMYGASAQNDVINELVQRRFYDVAVAQELKVAGFPRFEGVEEQDDKE
                     SFKVAAIFEVFPEVVIGDLSAQEVEKVTASVGDAEVDQTVEILRKQRTRFNHVEREAQ
                     NGDRVIIDFEGKIDGEPFAGGASKNYAFVLGASQMLPEFEAGVVGMKAGESKDVTVNF
                     PEDYHGKDVAGKTAMFTITLNNVSEATLPEVDADFAKALGIADGDVAKMREEVKKNVS
                     REVERRVNEQTKESVMNALLKAVELKAPVALVNEEAARLANEMKQNFVNQGMADAANL
                     DLPLDMFKEQAERRVSLGLILAKLVDENKLEPTEEQIKAVVANFAESYEDPQEVIDWY
                     YAEPSRLQAPTSLAIESNVVDFVLGKAKVNEKALSFDEVMGAQA"
     gene            18422..19036
                     /gene="clpP"
                     /locus_tag="ACFM5C_000371"
     CDS             18422..19036
                     /gene="clpP"
                     /locus_tag="ACFM5C_000371"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFC6068145.1"
                     /translation="MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDES
                     ANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAAS
                     MGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLM
                     AKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQILENRASLQF"
     gene            complement(19093..20358)
                     /gene="ispG"
                     /locus_tag="ACFM5C_000372"
                     /gene_synonym="gcpE"
     CDS             complement(19093..20358)
                     /gene="ispG"
                     /locus_tag="ACFM5C_000372"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFC6068146.1"
                     /translation="MNTLQRRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQ
                     IKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPE
                     CGKALSKYRINPGNVGKGVKGDEKFAFMIRTAAENDKAVRIGVNWGSLDQSLAKRMMD
                     ANLAFSAPKPPEEVTKEALIVSALESAEKAVLLGLPEDKIILSCKVSAVQDLIQVYRE
                     LGSRCAYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGSPRTQEV
                     VVGQEILQTMGLRSFTPMVTACPGCGRTTSTVFQELAQDVQNYLRQKMSIWRTLYPGV
                     ESLNVAVMGCVVNGPGESKLADIGISLPGTGETPVAPVYVDGERKVTLKGDNIATEFL
                     AIVEEYVKTNYGENGSKRNQNKIIPIQSL"
     gene            complement(20374..21135)
                     /gene="pilW"
                     /locus_tag="ACFM5C_000373"
     CDS             complement(20374..21135)
                     /gene="pilW"
                     /locus_tag="ACFM5C_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HFC6068147.1"
                     /translation="MPFKPSKRISLLLVLALGACSTSYRPSRAEKANQVSNIKTQLAM
                     EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD
                     SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA
                     EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK
                     IAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ"
     gene            complement(21138..22232)
                     /gene="rlmN"
                     /locus_tag="ACFM5C_000374"
     CDS             complement(21138..22232)
                     /gene="rlmN"
                     /locus_tag="ACFM5C_000374"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFC6068148.1"
                     /translation="MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDE
                     MTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGT
                     LCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVM
                     MGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVS
                     LHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR
                     ELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDI
                     DAACGQLAGQVQDKTRRQQKWQQILIGQQG"
     gene            complement(22376..22801)
                     /gene="ndk"
                     /locus_tag="ACFM5C_000375"
     CDS             complement(22376..22801)
                     /gene="ndk"
                     /locus_tag="ACFM5C_000375"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFC6068149.1"
                     /translation="MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTL
                     KEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGT
                     IRADFATSVSINAVHGSDTPENAALEIAYFFSQTEICPR"
     gene            complement(22860..24011)
                     /gene="zapE"
                     /locus_tag="ACFM5C_000376"
     CDS             complement(22860..24011)
                     /gene="zapE"
                     /locus_tag="ACFM5C_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HFC6068150.1"
                     /translation="MSSRDQLFKAPPFENHSPLTWYQAASQLPNFIRDDAQAAAIEHL
                     DRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKR
                     RVHFHAFMAEIHRRLKTLKSESNPLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRL
                     LENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRT
                     LRPAEIFFTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDF
                     RALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLIDVLYDFRVKLCA
                     TGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG"
BASE COUNT         5709 a         5861 c         6667 g         5952 t
ORIGIN      
        1 tgattctgct tattcggaac gctggcggca gatcaagcgg cacagccaat atttaatcgg
       61 cggcaaactc aggctttggc aaaaacgctt ttgggaacat actatccgcg atgaggccga
      121 ttttgcctgc cattttgatt atctgcattt caatccggtc aaacatggct atgtaggaca
      181 aatttccgat tggcggtttt ctacgtttca ccgttatgtc aaacagggta tttatccgca
      241 taattggggt ggcggcaatg cggacttttc tattgaatac gattaaagta atgtcggatt
      301 caagaatccg acctacggaa aactaaagat tttatacggg ctacggcttg ctggcttatg
      361 cgttggctta atttgaaaaa cagcacatcg gttcataata cacaaggtat tagaacaaaa
      421 gaagcagttg aacagggatt gcgtggtaat aatagacctg aaaaaggaat aggtaataga
      481 tggaattatg atggatttat aaaggaatta gcgaagtaac aggtattcta aatatttctg
      541 ataaatataa agaacaagga gtaaaaaaat gaaagtaatc actattacat tgtttactag
      601 ctgcatacta tctggatgct atgggcttga atatggaatg agtggcggca ttcctcatga
      661 tgactgggca agaggtagcc atgttagtca agccaaagca gatgctgcgt ggaaagaatg
      721 ttctgacaaa tatatgagaa atggtggttc aggattagta gaacaatgta tgaatgataa
      781 aggattaata cgtttatctg aaatacgtcg taggcaaaag agagcagaaa cacaaagagc
      841 agtaattaag taacaataat gaaatactac tgttcccgaa caaagcggca tttacgcagg
      901 tgatgacggc tatattttga aaaatgccgt ctgtaagcaa acgtgcttca gacggcattt
      961 ttttatccgg cggtctgtta tccgatccgt ttgaatacca agtcccaaac gccgtgtccg
     1021 aggcgtttgc cgcgcgcttc gaatttggtt tcggggcggt agtccggggt gggggcgtag
     1081 tctgccgccg tattttgcag gctgtcgaag ctgctgagga cttcaagcat ctgctgcgca
     1141 tattcttccc agtctgtcgc caagtggata tagccgccgg ttttgagttt gggcagcagt
     1201 ttggcgatga agggggcttg tatcagacgg cgtttgtggt ggcgtttttt gtgccacggg
     1261 tcggggaaga atatgtggat gccgtcgagc gagccgtctt gcagcatatt ttcgacaact
     1321 tctacggcat cgtgccgcat cacgcggatg ttttccaaat ggttttcttc tatgagtttg
     1381 agcagattgc ctacgccggg accgtgtacg tcgatggcaa gaaagtcggt ttcgggcagc
     1441 ctgcgggcga tttctgcggt tgccgtcccc ataccgaagc ctatttcgag gattttgggt
     1501 cggctgcttc cgaaacgggc atcaagatcg gccggtgttg cttggtagtc gatgccgaag
     1561 ctgccccata aggtatcgat ggcgcgttgc tgcgcggagg tcatgtggct ttggcggagg
     1621 acgaaactgc ggatgctgcg ggggtgttcg gcttgccagt tgttttgtgt ttggttttcg
     1681 gcggtgtctg tcataatgct ttcgtgcgct tgtgcaatca ggatgccgtc tgaatgtgaa
     1741 atgcctgttc ggacggcggg aaaggaaagg ggcgattata cctgtttcgt ttcggcaggg
     1801 taggtgtaac gctgttcaga cggcattttg ccactgttgc aacagttctt gcagaaagct
     1861 tttttgttcg tgtccgctgt ttatggcttc ttgcaggtag cggcaggctt tttcgttgtc
     1921 cggcccgaca ccgtgtccgc tgtaatggat gcaggcgagg ttgtagaacg ccatactgtc
     1981 tttttttgcg gcggcttttt caaaccattt gcgtgcttca ttgtagtcgg cggtcatacc
     2041 ctgtccgaag taatacatgc tgcccagatt ggtttgggct ttgctgtggc cgagttctgc
     2101 ggcttctgtg tagagtttga gtgcggctgc atattcgggc gcgcattgta atccgtaatg
     2161 cagggcttgg gctttttgat aaagccgttc tgccctttgc cgcctgatgg cggaatcttt
     2221 aatgccgccg tattggttag gatggtttaa cgcgctgtcg gatatgagtt tctgataggc
     2281 ggaaaggctg ccggcttcgg ctgcctgccg ataataatgc cgggcttttt ccgtatcggg
     2341 ggctatgccc aaactgtagc ggcagatgtc gcccagtatc cgcaaacctt cgggatggcg
     2401 ttcggcggcg gctgcttcgg catgatgcag ggcaagtttg tggtttcttt ccagatgctt
     2461 gccttgtagg tagatgtcgg caagtgcggc atgggcatcg gggtcatttt cctgtgccgc
     2521 ctgttggaac cggtaaacgg cttcatcggg agccgtaggt aggatgagtt cggcaagcgg
     2581 ggtgtaggcg ggaatgtatc cttgttgtgc ggcggcgcgc aaatgattga tagcttgggt
     2641 cgtgtcggtt ggtgtacctt gtccgaaacg gtattgaagg ccgagctgcc attgtgccgc
     2701 cgccaagcct tgtgctgcag cctcgcggta gagaaggtgt gccgtttcaa aatccggtgg
     2761 cgtaccgtac tggcagtatt gggcaagcag atattgtccg tgggggttgt tgttttttgc
     2821 ggtcgttttt gcccatttca gggcttcttc aaaatgtcgg gacgcataca gaaggtacat
     2881 caggcggact tgtgcttcgg gcagtccttc ctctgccaac ggtctgtaaa gcggtatcag
     2941 ggtttccggg cgcgcgcctt ccaattcttg gatatatgcc agattgtaac gcgcgtaggg
     3001 atgcccctgt tcggcggcga tgcggagcat ttccatacct tgttcgcggt cttggtgcgg
     3061 gctgtccgcg tccatcaggt gttttgctaa ctcgaatgcg gcggcgggat gacctgccga
     3121 ggccgcttct gtcagcaggc ggcggacttc ggtaaagtca tattgttctt gagacaggcg
     3181 ttctaaggct tgatgataga gtaagtcggg attgttcata tcagatcgtt ttccgttttg
     3241 tcaaatcatc gttattcgtt atgaagttag gtttatatcg gcacgcctgc ctactgtatc
     3301 atatttttta cagacggatt ttgtctttga aagcatgcta atgcagatgc tcgtaaatgg
     3361 tttccgccaa tgccttgctg atgccttcga cttgttccaa atcttctttg ctggcggcaa
     3421 cgacaccgcg caggccgccg aagcgggtga gcagggcctg gcggcgtttg ctgcctacgc
     3481 cggggatgtc gcttaaggag gaggtaacgc gtgctttgtc gcgttttttg cggtggcctg
     3541 taatggcaaa gcggtgtgat tcgtcgcgca cggtttgcaa tagatgcaag gccgggctgt
     3601 tgggcggcag gcggaagact tcgccggtaa aaggcagtat gagttcttcc ataccggctt
     3661 tgcgctcagg gcctttggcg atgccgacca agggaatgtg cagaccgagt tcttcccata
     3721 cggatacggc gacgccgatt tgtcctttgc cgccgtcaat caatacgaca tccggccatt
     3781 tgacggtctc gccgttggct tcggcttcct gcattttgcc gtaacggcgc atcaatactt
     3841 cgcgcatggc ggcgtagtcg tcgccgggct tggcggtcgt gatgttgtag cggcggtatt
     3901 gcgaaggctg gatgttttgc tcatcgtaca cgacgcagga cgcaatagtg gcctcgcctt
     3961 gtgtgtggct gatgtcgaaa cattcgaggc ggttgaggcc gtctgaatcc ataccgagga
     4021 ttttggcgag ttcgtcgata cggtgttgct ggctgctttg ttgcaggcgg cgttgggcaa
     4081 ttgccatttg tgcgttttgc tccgccattt tcaaccagac tttgcgttcg cctatggttt
     4141 tggtaacgaa ctgcatttgt ttgccgtgtt cgctctctag ggcttctttc aatgcgtcgg
     4201 gcatggggaa gttgctgatg atgatgtcgg gtttgctttt gcccagatag tgttgggcga
     4261 cgaaggcttc ggcgtagtct tgtccgtttg gttcgggatc gtttttggtg tcagggaaaa
     4321 aacttttatc gccgacgtgc cgtccgccgc ggatgctgac ccagtgtacg cagacgatgc
     4381 cgtctgaaac cgccagcgcg agcaggtcga tatcgttggg attgttcgga tttttactgt
     4441 cgataaactg attactctgc atgatgccga gtgcttggat ttggtcgcgg tagcgggcgg
     4501 cttcttcaaa ctgcaaattc gcggcggcgg tctgcatttt gtgttgcagg gtgcgggtca
     4561 gttcgtcggt cttgccgttg agaaaagtcg aggcctcgcg cacgctgtcg tggtagtctt
     4621 cttcgctgat atggccgaca cagggtgcgc tgcagcgttt gatttgatac agcaggcaag
     4681 ggcggtcgcg gtgttcgaac acgctgtctt cgcaggtgcg cagcatgaag actttttgca
     4741 ggacttggat gctgtcgcgc acggcgttgc tgttaggata tgggccgaaa tattgattag
     4801 gctttttcag cgtgccgcgg taatacgcca tttgcggata ttgatggccg ctgagcatca
     4861 aataaggata gcttttgtca tcgcggaaaa gaatattgta tttgggcgac agggctttga
     4921 tgaagttgtt ttcgagaatc agggcttcgg attcggagcg ggtgatggtg gtttcgatgt
     4981 ggtgaacctg tttcaccatc aatgcgatgc gcggggaatg gtcgtttttc tggaaatagc
     5041 cggacacgcg ccgcttgagg ttgacggctt tgccgacgta taagacgttg ccgctttcgt
     5101 tgaaaaaacg gtatacgcct ggcaggttgg gcaggttttt gaggaaaagt gggatgtcga
     5161 agtgttccgg aaaacgggtt tctttattca tatcaattac ttgaaaaacg gtttcagacg
     5221 gcatattacc atatcgctgg agacagcctt atccgttcgg acaaggctgc agggcggtta
     5281 catgctgcta atcgattttt acccgtttca ggcgcaaggc attgctcaac acggaaaccg
     5341 agcttgccgc cattgccgcg ccagcgatga cgggatttaa aaagccaagc gcggcgagag
     5401 gaatgcccaa gatattgtag aagaaggcga aaaacaggtt ttgcttgatg tttttcaaag
     5461 tggcttgcga caccagcaga gcatcggcga gttggttgac cgaatgctgc atcagcgtgg
     5521 cggatgcggt atgttcggca acgtccgctc cgcctttcat ggcgaagctg acgttagcgg
     5581 cggcaagcgc gggcgcgtcg ttgatgccgt cgccgaccat cgccacggtt ttgccggcgg
     5641 ctttgagttt ttgcacttcg gcagctttat cgcgcggact catgttgccg aaggcgtgtg
     5701 cgatgcccag ttgtttggcg acgtattcga ccgtgccttg gttgtcgccg ctcataatat
     5761 agacatcgat attgtgtttt ttcagacggc ctatggcttc ggcggtatcg gctttcaacg
     5821 cgtcggcaag tgcgaatgcg ccgatgggtt tgttatcgac cgagactgca acaatgcttg
     5881 caatgtccca aacgccgtct gaaaactcgg gcaaggtaag ttcggcaaat tcggctttgc
     5941 ctgctttcac caaacccacg tcttccactt cggcggcaat gcctgcgccg acaacggttt
     6001 gagcgttttg tgcggcaggg atttccaagc tgcgcgtttg ggcggcggaa acgatggcac
     6061 gggcaagcgg atgagtggcg ttttgttcga cggcagcggc gatgcggtac aaatcgtctt
     6121 cgtcaaagcc gctgtcggga acacaataaa cggcggcaac ctgcggcctg ccttcggtca
     6181 gcgtgccagt tttgtccaac acaacggcat cgacgtgggc ggcttcttcc attgccgctg
     6241 cgtctttaaa ccaaatgccg tgtttcactg ctttatccat gccgaccata atcgcggcgg
     6301 gtgtagccag accgagcgca cacgggcagg caatcaccaa aacggcgacg gcgtgcatca
     6361 gcgcaaccgt ccaatcgccc ttaatcagcc aagtaacaat aaaagtcaac aacgcaatgc
     6421 ccacgacggc aggcacgaat accgcagccg ctttatcggc tacgcgcgca atcggtgctt
     6481 tactgccttg tgcttcagag agcgcgttca tcatgtcgcc gagctgggtt tggctgccga
     6541 gctgcgtggc gcggtacacc acactgcctt cggtcattaa cgcgcccgcc aacactttgc
     6601 cgcccgcctt tttttcttca ggattggatt cgccggtaag atggctctcg tccgcccaac
     6661 cgctgccgct ttcaatgatg ccgtctgcgg caatgcgttc gccgtggttg gcgcggataa
     6721 ggtcgccgat ttgcacttgg tcgatgggaa gctgtttcca ttcgccgttg cgttgcacgt
     6781 tgacttgggt tggtgtaagt ttcaaaagca ggcccaagct gttcaggctg gattttttgg
     6841 tacggtgttc caaaaatttg cccagcgaca caaaaccgat caccatcacg cctgcttcaa
     6901 aatacacatg cgccatgccg tgtgccgcat gcggactgaa aaataacata tagacggaat
     6961 acagataaat cgataccgtg ccgatggtaa cgagcacgtc catattcgcc aatccacctt
     7021 taatactcgc ccacgcgctt ttgtaaaacg ggattgtcag ccaaagctgc accacactcg
     7081 ccaatgcgaa ctgccacaac ggcggaatca tccaatcgtg tctgccgatc atcatccccg
     7141 ccatgccgat aaggaacggg acgttgatgg tgaacagcag ccacagccgc cagccgatat
     7201 ggtgttctgc ttcgggttgc ggcaatgtat cttccgtttt ttccttcgcg ccgtaaccgg
     7261 ttttctcaat gattttggca atgtcggcta ctgaggtttt gctgtcgtca aacactacct
     7321 gcgcctcctc gctggcgaag ttcactcccg ccgattcgac aaaatctttt ttgttcaaca
     7381 ctttttcaat acgcgaagca catgcctgac aggtcatgcc ttcgatttgg aaacggattt
     7441 tttgttgcat aagcgtgatt cctgctttga tattcagacg gcagtcaagg ttgcgggatg
     7501 ccgtctgaac gcccgtatgg tcgaaatttc tcaaacgcgc cgataattcg agtagaatcc
     7561 gaaaacttga cacagcaaag gaaaaacaat gtcccaacac cgcaaactga ttattttggg
     7621 ttccggcccc gccggataca ccgccgctgt ctatgccgcg cgcgccaatt taaaccccgt
     7681 cattattaca ggtatcgcgc aaggcgggca actgatgacc accaccgaag tggacaactg
     7741 gcctgccgat gccgacggcg tgcaagggcc ggaattgatg gcgcggtttc tcgcccacgc
     7801 cgaacgtttc ggaacggaaa tcatttttga ccaaatcaac gccgtcgatc tgcaaaaacg
     7861 cccgtttaca ctcaaaggcg atatgggcga gtacacttgc gatgccctga ttgtcgcaac
     7921 aggcgcgtcc gccaaatacc ttggtttgcc gagtgaggaa gcgtttgcag ggaaaggcgt
     7981 ttccgcttgt gccacctgcg acggtttctt ctacaaaaac caagatgttg ccgtagttgg
     8041 cggcggcaat acggcagttg aagaggcact ctaccttgcc aatatcgcca aaaccgttac
     8101 cctgatccac cgccgcagcg agttccgtgc cgaaaaaatc atgatcgaca aactgatgaa
     8161 acgcgtggaa gagggcaaaa tcatcctcaa gctggaaagc aacctgcaag aagtactggg
     8221 cgacgatcgg ggcgtaaacg gcgcattatt aaaaaacaac gacggttctg agcaacaaat
     8281 tgccgtcagc ggcattttta tcgccatcgg gcacaagccg aataccgata ttttcaaagg
     8341 tcagttggaa atggacgaag ctggttacct gaaaaccaaa ggcggcacgg cggacaatgt
     8401 cggcgcaacc aatatcgaag gcgtatgggc ggcgggcgac gtaaaagacc atacctaccg
     8461 tcaggcgatt accagcgcgg cttccggctg tcaggcggct ttggacgcgg aacgctggct
     8521 gggcagccaa aacatttgaa tgccgtctga aaccgaaatt ttcggcggaa tgcaaatttt
     8581 tcgcaccaaa tccttgattc cgtcggcaaa ccccaatata atgcctgctc tttgaacctt
     8641 gccttctgct ttcgcatggc agaaggctgt ttttaccatc cataaggaga taacatgcgt
     8701 cattacgaga tcgtgtttat cgttcatcct gatcaaagcg agcaagtgcc tgctatggtt
     8761 gaacgttaca aaaccatgat tgccgaagca aacggtaaga ttcaccgttt ggaagattgg
     8821 ggtcgccgcc aactggctta cccgattaac aaaatccata aagcccatta cgttttgatg
     8881 aacatcgaaa ccactcccga agtggttgaa gagttggaaa ccgcattccg tttcaatgat
     8941 gcggtattgc gccatctaac catcaaaacc aaacacgccg ttaccgaagc atcccctatg
     9001 ttgggtggtg aaaaggctaa gaacctgctg agcggtgcgt ctgaagaagc ggctgcccaa
     9061 taattgggat tcaataatct tgtttcgctt gccgcgttga ttgaaaaggt tttccctatt
     9121 cgatatacgc ctgccggaat ctctgtctta gatattattt taaagcatga atcatggcag
     9181 gaggaaaacg ggcagcaatg ccttgtccaa ttggaaattc cggcacggat tttaggcagg
     9241 caggcggaag agtggcagta tcggcaaggt gtatatgttc acgtcgaagg ttttttagct
     9301 caaaaaagca gacgttccct tatgccgatg ctcaggatac aaaatattca agaatataaa
     9361 ggttaaacga caatggctcg tcaatcattc aaacgtagaa aattctgccg tttcacggct
     9421 gaaaaaatcc aagaagtcga ttacaaacaa gttgatttgc tgaaagactt tatctctgaa
     9481 aacggtaaaa tcattcctgc acgcatcaca ggaacgaagg cattctacca acgccaattg
     9541 gctgttgccg taaaacgcgc acgcttcctg gctctgctgc cttacaccga ccaacacaaa
     9601 taattttgga gattgaatca tgcaaattat tctgttagaa aaaatcggcg gtttgggcaa
     9661 cttgggcgac atcgtaaccg ttaaaaacgg ctatgcccgc aacttcttga ttcctgctgg
     9721 taaggcaaaa cgtgctactg aagcaaacat gaaagagttt gaagcacgcc gtgccgaatt
     9781 ggaagccaaa caggccgaaa ttttggcaga tgcccaagcc cgtcaggaaa aattggatgg
     9841 ccaaaccatt accgttgcac aaaaagccgg tgtggacggt cgtctgtttg gttccgttac
     9901 caatgctgat attgcggctg caatcgttgc gactggcatc gaagccgtga aagcaaatgt
     9961 acgtctgccg aacggtcctc tgaaagccgt tggcgagtac gaagtggaag tggctttgca
    10021 cactgatgcc gttgctaaaa ttaccgttgc cgtcgttgcc gcaaccgagt aattgaaatt
    10081 atcagatgcc gtctgaaacc ctgccgattg tcggaatgtg gtttcagacg gtatttgttt
    10141 tgttttccgt atattctgca aaggtctcgg tcaggttgtc tgtccttttg tcggaacagg
    10201 agactgggca gctttgtcct gattaattac ttgtgcaaac ggtaaaaagg ttttttcgtg
    10261 tgttttaaag caggttgtac agcatttttc cggcaatcaa aagcaacata atgccgaagg
    10321 attttttgag tttggcagaa gaaagtttgt gggcggtttt gacaccgagc ggggcaaagg
    10381 caatggttgc cgcgctgagg acggcgacgg cgggcaggta aaggaagccc agtgaccctt
    10441 cgggcaatcc tgcaatattc aggccgttga gcagatacga tattgcgccg gagagtgcaa
    10501 tcggccaggc aaggccggat gatgtgccga tggctttatg ggcggggaag ccgcagtgga
    10561 ttaagaaggg gacggaaagt gaaccgccgc ctatgccgac ccagctcgac attgtgccga
    10621 acagtgtgga aaccgcagtc agtccgggca gtccgggcag cgggcgggat gccgtctgag
    10681 ggtcggtatg cagtgttttg aatgcgacgg cggttaaaaa caggatgaag aaaatttgaa
    10741 gcccgaacgc tgggatatat tttgcggaga gtgcgccagc gaatacgccg aataccatac
    10801 ccggcatcat cgtaaatacg gttttccagt cgaccgcctg ttttttgtgc tgccccagca
    10861 tactggaaaa ggcggtgaag accatgacgg cgaaggatgt gccgacggcg aggtgttgcg
    10921 cgtaaggatg ttgtgccaaa ccctgcaaat caagcaccca taaaacgaca gggacaatca
    10981 gcgtgccgcc gcctacgccg aacaggccgg caataaaacc tgccgcactg cctacggcaa
    11041 gcaggattaa gataatgtcc caatgccaca tttaatccgc ctttctgtat tttttccaga
    11101 atcggcgtgc cgccataatg tagccggaca ggctgtatcc gagaaagaac aggaagagga
    11161 cgagcgacgg ttcccaagtg accagaagca gcagtaagac ggcaagcagc attccgacaa
    11221 aggggacttg tctgcggatg ttgatttctt taaaactcca aaaagggatt tggacaatca
    11281 tcgacaggcc ggcaaacagt gtgatgccca atgcccacca gtggacggcg gggaattttt
    11341 cgacgctgtg gttgacccaa atcagcccga caatcagcgc ggcggcagtc ggactgggca
    11401 cgccgataaa ccagcgtttg tccaccttgc cgatgagcgt gttgaacagc gcaaggcgca
    11461 gggcggcgca ggcgcagtag atgaaggcga cggaataacc gattttgccg aactgccaaa
    11521 gctgccattt gtaggcaatc agagcgggag caacgccgaa gctgaccata tcggcaaggc
    11581 tgtcgagctg ctccccgaac gcgctttggc tgttggtcag ccgcgccacg cgcccgtcca
    11641 taccgtccag caacatagag atgaataccg cgatggcggc ggtttcataa cgtccgtgca
    11701 tggattgggt gattgcgtaa aatgcggaaa acagcgcggc gatggtaaag gagttgggca
    11761 gcaggtagat actgttttga cgcagggagc gttgcggggt gttggtcggg gtttccatag
    11821 ctgaagtgtc tcacggacgt ggagaatcga taggggatta taacccaaac cattatcgaa
    11881 caatacgccc tttaggatga agccctcgga ggcggtttgt ttttctgatg gcggatgctt
    11941 tgcggggcgg tttgactctg cctgccaccg ggtgtgttgt ttcggatttt tgccggatgg
    12001 atattgttgc cgggcatttc tgggcttgcc ggaaggtatc ggggggaggg catcggaata
    12061 tgcggcgcac cgttcaaacc ggggcggcgt ttccctattt tcggggagtt tgcaggcttc
    12121 aacaaattga aagatatttt ttgcatttcc gaccgtatgc tgattttgaa acgggataaa
    12181 ttataggaca aggtttttcg cccgccgcaa aggttggccg caatgccgtc tgaaaacaac
    12241 ggcttgccgc taaggcggcg gtatgcggat ttgcgctgct gaaatcggtt tgccataccc
    12301 ggcggtgcaa tctgcgggga gggataagcc gataaggcgg gacttatcct gttttttgtt
    12361 tataatgcaa cagaatttgg acgaaccgtc gggaatttat catgatgaaa aagatactgg
    12421 ccgtatcggc actatgcctg atgactgcgg cggcacgggc tgccgatact tacggctatc
    12481 tcgccgtttg gcagaatccg cagaatgcgg acgatgtttt gcaggttaaa accacaaaag
    12541 aagattcgac gaaaagcgaa gcgttttccg agttggaagc cttctgcaaa ggtcaggaca
    12601 cgcttgcggg cattgctgaa gacgagccga ccggatgccg gtcggtcgtg tcgctgaaca
    12661 atacctgtgt cgcgctggca tacccgaaag ccttgggcgc gctgcgtgtc gacaacgccg
    12721 tcgtgattac ttctccgcgt tttacgagcg ttcatcaggt cgcactcaac cagtgcatca
    12781 aaaaatacgg cgtacaggga caatgcggct tggaaacagt gtattgcaca tcttcttctt
    12841 attacggcgg aactgtgcgc tctttgattc aaaatctcaa ataaaacgga aaatgccgtc
    12901 tgaaagatgt tcagacggca tttctatatc gacggtcagg attctttcgg atcgggcagc
    12961 aggctgttca acataatggc aagtacggcg cacaagccca cgccggcaaa gctgaagctg
    13021 cccaatttga gcgtcatgcc gccgatgccc gtggtcagta ccgagctgac gatgaccagg
    13081 tttttcggca gcatcaaatc gactttggca tcaatcagcg ttttcacgcc caaagaagca
    13141 atcgtgccga acagcagcag cataatgccg cccattactg gcatcggaat ggaagccaaa
    13201 aacgcattga atttgccgaa aaacgccatg cagacggcaa aaaccgccgc ccaagtcatg
    13261 atgacggggt tgctgttttt ggtaatcatc accgcacccg ttacttcgcc gtaggtcgta
    13321 accggcgggc cgccgatcag acccgcaacg cacacgccca aaccgtcgcc tgcaagggtt
    13381 ttgtccaagc ccgggtcttt cgtatagtct ttccccgtca cattgccgat tgccatgatg
    13441 ccgccgatgt gttcgatggc gggggcgacg gcaacgggca gcataaacag tgccgcctgc
    13501 cagttgacct gaggcgtttc aaaatgggga acggcgaacc agggcgcgtg tgcaatgctt
    13561 gccgtgtcca ccagtcccat cagcagtgcc aaaacataac ccgaagcgac accgatcaag
    13621 ataggaatca gcttcatcat cctgctgccg aaaaccgata cgatggcggt aacggcaaag
    13681 gtaaagccgg aaagaatcag tgaatcggta tagtcgatga cctgtttgcc gtccgcctga
    13741 cccattgcca tgctgcttgc cgccacggca acagacagac cgatgaccat gatgacgggg
    13801 ccgatgacga ccggcggcag cagtttgtgt accgccgcca gtccgcgcca acgaattagc
    13861 acggcaaaca caaaatacat aaagccggcg gcaaacagtc cgaacatggt ggaaggcagc
    13921 ccccattctc cgatggagta gataatcggt gcgataaagg caaacgaaga accgagaaaa
    13981 atcggcactt tacgtttggt tgtaatttgg aacagcagcg ttcccaagcc tgcgcccaaa
    14041 agcgcaagag ccggattcag accggtcagc aggggaacca gcaccattgc gccgaatgcc
    14101 acaaataaaa tctgtgcacc ggaaacggca agtttcagtt ggttcatacc atcttctttc
    14161 aatcggttca aacggcacgg attatactgg tttgccgagg gtctgcgtaa aaatacatac
    14221 gtcgggcaac agatatgccg tctgaaaggc aatgtctgtc tgttgcagga tgaaagcagg
    14281 agaaatggag tataatccga cactttccat attcaatccg caagccgtcc ggcttcctta
    14341 tttcagacgg cattttccgg taatacggca tgacagaaaa atcccataaa aaaacagcaa
    14401 aaggcagggc gggaagcccg tccccaacgt ccgcacgcaa caagaaagcc gacaacggcg
    14461 cacggggcaa taaagtttcc gagcggctca aggcggtcaa agagttgcag aaaaccgaaa
    14521 ccaaaaaggc gcgtcccgaa catgtcgtca accttatcgg cgacgcactg tggctgatgg
    14581 gtttggcggc aaccctgtat ttggcgattt ccctgatcag tttcgatatg ggcgatccgt
    14641 cttggtcgca cagttcgccg gttgtggaag atgtcgccaa ttggggcgga ctgttcggcg
    14701 cgtatgttgc cgatgtcggc tattatcttt tcggctggtc gttctggtgg tggatagcgg
    14761 ctgcctgcgt cgtgctgtat aaaaatttcc gcctgcacgc aaaacagacg gaaaacgagg
    14821 catacaacca caaaatcgct gccgccgcgc tgtttgtcct gacggtcttc agccccgtct
    14881 tggagtattt tgtgctgggc ggaaaatatg ccgactccct gcctgtcgga gcaggcggta
    14941 tggtcggcat acgcgtcggc gcagtgtttg cgtggctgct ggggaaatcg ggcagcctgc
    15001 tgattatctt ggttgttctg ctgttgtcgt tgtccctact ggtgcagatt tcatggctgg
    15061 aatttttgaa cggtgcaggc agggcggttc aaaaccgcct gagtgcctta tccggcaagg
    15121 tcatggcttt aggaaaacgc cggccgaata ccaaaacaga cggtgtcgat acccaaaata
    15181 cacggcgcat ggtaaaagaa gccaagaata ttacggccaa acccgttgcc ttgcccgaag
    15241 gcagcagcag caaccgcaaa tccgtcgcgg tttccgtcgc gccgccgccc aaaattcagg
    15301 tttctctgtt tgaagatgac gaacctcggc aggcgggcga ataccacaag cctacattga
    15361 acctattgcg gattcccgac agcgagcccg tcagcatcaa tcccgccgaa ttggagcgca
    15421 ctgccgaact aatcgaatcc aagctggcag aattcggcat cggcgtacaa gtcgtatccg
    15481 ccacatccgg ccccgtcatc acgcgctacg aaatcgaacc cgcgcaaggt gtcaaaggca
    15541 gccaaattgt tgccttgtcg aaagatttgg cacgctctat gtcgctgcaa tccgtgcgta
    15601 tcgtcgaaac catcgccggg aaaaacacga tgggcatcga gttgcccaac gacaaacgcc
    15661 aagacgtgat gttgagcgaa atcttgtcct cgcccgtgtt tgccgaagcc aaatccaagc
    15721 tgaccgtcgc gctgggcaaa gacattgccg gtacccccgt tgtcggcgac ttggcgaaaa
    15781 tgccgcacct tttggtcgcc ggtatgactg gttcgggcaa gtccgtcggc gtgaacggca
    15841 tgattatgtc tatgcttttc aaagctacgc ccgacgaagt ccgcttcatt atgatagacc
    15901 cgaaaatgct cgagttgagc atttacgacg gcattccgca cctgctctgt cccgtcgtga
    15961 ccgatatgcg cgaagcaggg caggcgttga actggtgcgt cgccgaaatg gaaaaacgct
    16021 accgcctgct ttcccacgcc ggtgtacgca atctggaagg cttcaaccaa aaagtcgaag
    16081 ccgcaaaagc ggcaggcaag cctttgctta atccgttcag cctgaacccc gacgagcccg
    16141 agccgctgga aaaactgccg ttgattgtgg tcgttatcga cgaacttgcc gacctgatga
    16201 tgaccgaacg caaagccgtc gaacagcaaa tcgcccgtct cgcccaaaaa gcgcgcgccg
    16261 ccggtatcca tatgattgtc gcgacccaac gtcccagtgt cgatgtcgtt accggcctga
    16321 ttaaagccaa catcccgacg cgtatggcgt ttaccgtgca aagcaaaatc gacagccgta
    16381 ccatcctcga ccaaatgggc gcggacgaac tgctcaaata tggcgattcg ctgttccttc
    16441 agcccggcag tgccgaaccg acccgcctgc aaggcgcgtt tgtttcagac gacgaagtac
    16501 atcaagtcgt caactacgtc aaatcgcaag ccccagccga ctatattgaa ggtctgctca
    16561 gcggcgaggc cgcgctggaa actgccaata tcgttaatcc gaatgcagac agcgacgaat
    16621 tgttcgatca ggcagtcgcc tatgttttgg aaagcaaaaa aacctccatt tcgtctttgc
    16681 agcggcagtt gcgtatcggc tataaccgcg cggcaaacct gatggaggca ctggaaaatg
    16741 cgggtgtcgt ttctcccacc gacctcaacg gcagccgtaa aattttggcg cacaaggacc
    16801 atttgtagcc cgtattgcaa aatgccgtct gaacggcgga attggcgttt cagacggcat
    16861 attatgtttc aggcgaaaca ttgtgatata cttgccagct aaaatttccc ctttgcggca
    16921 atgcggttca aatatcgtac cgttgcgctg tttgcttccc catgtaggga agaaagttta
    16981 tcattttatc aacacaacaa atttaagggc ttatgatgag cgtaactgtt gaaactttag
    17041 aaaatctgga acgcaaagta gtgttgtccc tgccttggtc cgaaatcaac gcagaaaccg
    17101 ataaaaaact gaaacaaact caacgccgtg caaaaatcga cggtttccgt ccgggtaaag
    17161 cacctttaaa aatgattgcc caaatgtacg gtgcgagcgc acaaaacgac gtgatcaacg
    17221 agctggtgca acgccgcttc tacgatgttg ccgttgccca agagttgaaa gtggcaggct
    17281 tcccccgttt tgaaggcgtt gaagaacaag acgataaaga gtctttcaaa gttgccgcca
    17341 tttttgaagt gttccccgaa gtcgttatcg gcgatttgtc tgcacaagaa gttgaaaaag
    17401 taaccgcttc cgtcggtgat gccgaagtgg accaaaccgt agaaatcctg cgcaaacaac
    17461 gtacccgctt caaccatgtc gaacgcgaag ctcaaaacgg cgaccgcgtc atcattgact
    17521 ttgaaggcaa aatcgacggc gaaccttttg caggcggcgc atccaaaaac tacgccttcg
    17581 tattgggcgc aagtcaaatg ctgcctgaat ttgaagccgg cgtagtcggc atgaaggctg
    17641 gcgaaagtaa agacgttacc gtcaatttcc ctgaagacta ccacggtaaa gacgttgccg
    17701 gtaaaactgc catgttcacc attacgctga acaacgtttc cgaagcgact ctgcctgaag
    17761 tcgatgcaga ttttgcaaaa gccttgggta ttgcggatgg cgacgttgcc aaaatgcgcg
    17821 aagaagtgaa gaaaaacgta agccgcgaag tggaacgccg cgtaaacgaa caaaccaaag
    17881 aatccgtaat gaacgcgctg ctcaaagccg tagagctgaa agcacctgtt gctttggtaa
    17941 atgaagaagc cgcacgcttg gcaaacgaaa tgaaacaaaa ttttgttaac caaggtatgg
    18001 ctgatgctgc caacttggat ctgcctttgg atatgtttaa agaacaagcc gaacgccgcg
    18061 tgtctttggg tctgattttg gccaaactgg ttgatgaaaa caaactggaa ccgactgagg
    18121 agcaaatcaa agccgttgtc gccaacttcg cagaaagcta cgaagatcct caagaagtaa
    18181 tcgactggta ctacgcagag ccttcccgcc tgcaagcccc gacttctttg gcgatagaaa
    18241 gcaacgtcgt tgatttcgtt ttgggtaaag ccaaagtaaa cgaaaaagct ttgtcttttg
    18301 acgaagtgat gggcgcgcaa gcctgattat cctgaaaatg ccgtcttagg gcagtttttg
    18361 aaagcaccga agccgctttt aaagcccgct ttggtgcttt tacatcatga aaggagacga
    18421 aatgtctttt gataactatc ttgtccctac cgttatcgag cagagcggtc gcggtgagcg
    18481 tgcattcgat atctattctc ggcttttgaa agagcgcatc gtattcttgg tcggcccggt
    18541 aaccgacgag tccgccaatc tggtggttgc ccaactgttg tttttggaaa gtgagaatcc
    18601 ggataaggat attttcttct atattaactc gccaggcggt tcggtaacgg ccggtatgtc
    18661 gatttacgac accatgaatt ttatcaagcc cgatgtatcg actttgtgct tggggcaggc
    18721 agcaagtatg ggcgcgttct tattgtcggc aggcgaaaaa ggcaaacgtt tcgccctgcc
    18781 caacagccgg attatgattc accagccttt aatcagcggc ggcttgggcg gtcaggcatc
    18841 cgatattgaa attcacgcac gcgaactgtt gaaaatcaaa gaaaaactca accgcctgat
    18901 ggcgaaacat tgcggccgcg atttggcaga tttggagcgc gacaccgacc gtgataattt
    18961 catgtccgcc gaagaggcta aagaatatgg tctgattgat caaatcttgg agaaccgtgc
    19021 ttctttacag ttttaataag aaatctgaga gaaacaaatg ccgtctgaaa acagttcagg
    19081 acggcatttg tcttataggg actgtatagg gatgattttg ttctggttgc gtttggagcc
    19141 gttttcacca tagttggttt tgacatattc ctctacaata gctaggaatt cagttgcaat
    19201 attatcacct ttcagtgtga ctttgcgctc cccgtccaca taaaccggcg cgacgggtgt
    19261 ttcccccgta ccgggcaggc tgatgccgat gtcggccaat ttgctttctc cgggcccatt
    19321 gacaacgcag cccattacgg caacgttcag ggattcaacc ccgggataaa gggtacgcca
    19381 tatagacatt ttttggcgca ggtaattttg aacatcttgt gccagctctt gaaatacggt
    19441 actggtggta cgcccgcagc cggggcaggc ggtaaccatc ggcgtaaacg aacgcaatcc
    19501 catagtctgt aaaatctctt gcccgacgac gacctcctga gtacgcgggc tgccaggttc
    19561 cggagtcagt gaaatgcgga tggtgtcgcc gattccttct tgaagcaaga cggataatgc
    19621 cgccgttgat gcgacaatgc ctttgctgcc cataccggct tcggtcaaac ccaaatgcag
    19681 cggataggcg caacggctgc ccagttcgcg gtaaacctga atcaaatcct gaaccgcgct
    19741 gactttgcac gacaggatga ttttgtcttc gggcagtccc aatagaacgg ctttttcggc
    19801 agattccaaa gcggagacaa tcagtgcttc cttcgtcact tcttcgggcg gtttcggcgc
    19861 ggaaaaagcg aggttggcat ccatcatacg tttggcgagg ctttgatcca aagaacccca
    19921 gtttacgccg atgcggacgg ctttatcgtt ttcagcagca gtccgaatca taaaggcaaa
    19981 tttttcatcg ccttttacgc ctttgccgac attgccggga ttgatgcggt atttggacaa
    20041 tgctttgccg cattcgggaa attccgccaa caggcgttcg ccgttgaagt ggaaatcgcc
    20101 gataagcggt gtggcatagc ccatatcgtc caagcggcgg cggatttcgg caactttgga
    20161 cgcggcttcg gggctgttga cggtaatacg caccatttcg gatccggcat cgctcaattc
    20221 cttaatctgc aatgcggtgg cttttgcatc ggcagtgtcg gtgttggtca tagattggat
    20281 aacgacgggt gcttctgaac cgacggtaat atgatcgatg cggacttgat gcgtcttgcg
    20341 gcgttggagt gtgttcatat ggtttgaatc tgtttattga ccggtgagga cggtttgcaa
    20401 ttcttccgag taggggaaat tcgcctgcaa ttgtgcttca tattcgtatg ccgcctgtgc
    20461 gttgccgagg gctttggcaa ttttccagcc tagcagcaaa tcatcggcct gaaggacttc
    20521 taccctgctt tggtattttt taaagtagta atcggcatcg cccaactgcc cggccagcat
    20581 tttggtgcgc gccagttctt taaatgcggg tgggaactgc ggctgggcgg cgagggaacg
    20641 tttcaaatag gcttccgcca atccgaattg cccctgtttt gcgctgcata tgcctttatt
    20701 caggttggca atataagggg tcgggtaggt ggggtcggcc agggctttgt cgaaatatgc
    20761 catagattcg gcagggcggt tgagcctgcc gcacaggaac cagccgtagt tgttgttgat
    20821 ttcggcactg tcgggtttga tggagagggc ttgccggaaa ctttcctgcg ccttgtcgtt
    20881 aactttcagg tattgataga tttcggcacg gaccagccag gcaagctcgt ttttagggtc
    20941 tgatttcaag gcgtcttcaa tacttgccgt cgcctgacgg tagtcctgac cgcgcatata
    21001 ttccattgcc aactgggttt tgatattgga aacctgattg gctttttctg cccgcgaggg
    21061 gcggtaggaa gtgctgcacg cgcccaaggc aaggacaagt aataaagaga ttcgtttgga
    21121 tggcttaaaa ggcataatta cccctgttgt ccgattaaaa tctgctgcca tttttgttgg
    21181 cggcgcgttt tatcctgaac ctgccccgcc aactgtccgc aggcggcatc gatgtcgtcg
    21241 ccgcgcgttt ttcgtacggt aacgacaaat cctgcctgct gcaaaatatc gcggaacaca
    21301 cggatgttct cattgctgga gcgttcgtat ccggagtttg ggaagggatt gaacggaatc
    21361 agattgaact tgcagggaac atctgtgacc agttcgatca gttcgcgcgc atgttgcgcc
    21421 ttatcgttta ttccgtccaa catgacgtat tcgaaagtga tgaaatccct gggtgctttg
    21481 accagatagc gttggcatgc ggccatcaat tctttcaagg gatatttttt gttcaacggt
    21541 acgatttggt tgcggacttc gtcattggaa gcgtggaggg aaaccgccaa agccaccggc
    21601 atgacatcgc gcaacctgtc catttgggga accatacccg aagtggaaac ggttacgcgg
    21661 cggcggctca aaccgtagcc gtggtcgtcc agcatgatgc ttaaggcggt aacgacattg
    21721 tcgaagttcg ccatcggctc gcccatgccc atcatgacga cgttggaaat aacgcgctcg
    21781 tttttcggtg taacgcccat cgctttgttt gcccaccaca attgcccgat gatttcggca
    21841 gcagtcaaat tgcggttgaa gccctgccga ccggtcgaac aaaatgtaca ttccaaagcg
    21901 cagccgactt gtgaggaaat gcagagcgtg ccgcgatccg attcggggat gaagacggtt
    21961 tccaccccgt tgcccgtacc gacatccaaa agccattttc gagtgccgtc tgaagatttt
    22021 tgagacatca tcagcttggg aatttcgatg cctgcctgtt cgttcagttt atggcgcaac
    22081 gattttgcca aatcggtcat ttcgtcaaaa ttttgcgcgc cggattggtg catccaacgc
    22141 ataacctgtt tggcacggaa aggtttttcg cccatatcgg caaaatgtcg ggtcagccct
    22201 tggaggtcgt agttgagcag attggttttc atgtatttgt gtttttctta aattaaggct
    22261 tcaaataaaa aattgcaggg caggcaagtt tgatttgaag ccttttgcaa cagagttttc
    22321 agacggcatg gatatatttt atgccgtctg aagaggagtt gtgcggtgta ttgtatcaac
    22381 gggggcagat ttcggtttgg ctgaaaaagt aggcaatttc caaagcggca ttttccggag
    22441 tgtccgagcc gtgtacggca ttgatgctga ccgaagtggc aaagtccgcg cgtatcgtgc
    22501 cttcggcggc ttcggaagga ttagttgcac ccatcagttc gcggtttttc agaacggcgt
    22561 tttcaccctc taatacctga atcataaccg gaccgccggt cataaattca accaatccgg
    22621 cgtagaaggg gcggtcttta tgaaccgcat aaaattcttg cgcctctttg agggtaagct
    22681 gcttcatttt ggcggcaacg attttcagac cgttctcctc aaagcggctg tatattttgc
    22741 cgataacgtt tttgccgacg gcatcgggtt tgatgatgga gatggtacgt tcaatcgcca
    22801 tgctatatcc ttatttttac ttaagaagaa tcaaatcggt attctatcaa aaaaataact
    22861 tatccgcctg aagccttggg agatagggtc aggtgcggct gttccaaata aacttcggac
    22921 tgcatttcga ccatccggct ggcggtgcgg gtaaattctt cggcaaaatc gccttctgta
    22981 tagatatggt tgacatctac cgcgccggtg gcacacagtt tgacacggaa atcgtagagt
    23041 acgtcaatca gccaagtcag ccgccgtgcc tccgcctttt cttgcggtga gagttgttcc
    23101 aaacctgaaa taaaaaccat ttcataatgt tcggccaaat acaggtagtc ggactgtgag
    23161 cgggggccga agcacagtgc gcggaaatca aaccatatgg cacggccgga ctcggctttg
    23221 tggggaatct cccgaccgtg gatggtgctg atgccggggt tcaaatcggt aatgcctgtc
    23281 atttctttga acagttttgc cagttttgcc tcattttctt cattggcagg cgtaaagaaa
    23341 atctcggcgg ggcggagggt acgcagtcgg tagtcttcac cgccgtcaac atttaagacg
    23401 gtcaggctgg actcgatgag cgcgattgtg ggaagaaaac tgctccggtt ttgaccttgc
    23461 gggtagagtt cggaaggcgc gtagtttgaa gtcgccacca aaacaacgcc ctcgttaagc
    23521 aggttttcca gcagacggcc taaaatcatt gcatccgcaa tatcgctgac atgaaattcg
    23581 tcaaaacaca atacgcgggt ttctttggca atctcggcgg caacggattt caacgggttg
    23641 ctttcgcttt tcagggtttt cagccgccgg tggatttctg ccataaaggc atgaaagtgg
    23701 acgcggcgtt tgcggcggta agggaggcag ccgaaaaaag cgtccatcag aaagcttttg
    23761 ccgcgtccga ccccgccata gaaataaagc cctttgggga cttgcgggga acgcaaactc
    23821 ctgcctaaaa aacggtttct tttgcgtttg aacatcatca attcggtcca aagccgatcg
    23881 aggtgttcga tggcggcagc ctgcgcgtcg tcgcggatga agttgggcag ttgtgaggca
    23941 gcctgatacc aggtcagcgg gctgtggttt tcaaacggcg gggctttaaa aagttggtct
    24001 ctactactca tatttaacct ttttatactt cttgcggcta agaaagaaaa tgcttactgt
    24061 cggtattata aatgatttcc ttcaaacttg gcattttccg tggaaaagaa taatgacgcg
    24121 cacaaggggg tatgagcaaa ggcggcgttt caatatggtg cagatatgag ctcaaatgcc
    24181 ttttatagt
//
LOCUS       DAXHNP010000013        22589 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.013, whole genome shotgun sequence.
ACCESSION   DAXHNP010000013 DAXHNP010000000
VERSION     DAXHNP010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22589
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.013"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(212..4381)
                     /locus_tag="ACFM5C_000377"
     CDS             complement(212..4381)
                     /locus_tag="ACFM5C_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HFC6068151.1"
                     /translation="MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLS
                     VLILAVCFLSWLAGTESGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEG
                     ADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPA
                     AVYLDRFETGKISAGKAFDKPTVYLERLDASYRYDIKGHRLDLKAADTPWSNSSGSAS
                     VGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHP
                     FAESLDKTLEEVLVKGFNINPSAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENT
                     KAGFADRNGIPVRQVLGNFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLN
                     IGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPAN
                     GQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRIDPQLPAGNING
                     SINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKT
                     DGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARN
                     LHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQH
                     RIRTHAAMTLDGKPFKFDLDASGGINRELTRWKGSIGILDIGGAFNLKLQNRMTLEAG
                     AERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLV
                     LNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGA
                     RFGRINADLDIGNAFGGNMANAPLGGRITASLPDLGTLKPFLPAAAQNITGSLNAAAQ
                     IGGRVGSPSVNAAVNVSSNYGKINGNITVGQSNSFSTSPLGGKLNLTVADAEVFRNFL
                     PVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRK
                     WVIDSLKFRHEGTAELSGTVGIENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRY
                     SPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLN
                     DGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFV
                     GPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGS
                     GSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQ
                     LTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSD
                     KKDSAGNSKGK"
     gene            complement(4436..6283)
                     /locus_tag="ACFM5C_000378"
     CDS             complement(4436..6283)
                     /locus_tag="ACFM5C_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex family protein"
                     /protein_id="HFC6068152.1"
                     /translation="MHDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFK
                     NKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAP
                     DNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEY
                     YRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTRAAVNPDTATVDL
                     NVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHY
                     SGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKG
                     YIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVR
                     DRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDG
                     KIGTTLGTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTLARDNADVPSGLM
                     FRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDA
                     AANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF"
     gene            6659..7888
                     /gene="sstT"
                     /locus_tag="ACFM5C_000379"
     CDS             6659..7888
                     /gene="sstT"
                     /locus_tag="ACFM5C_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFC6068153.1"
                     /translation="MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLF
                     GSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGM
                     VFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGA
                     ALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKL
                     LAVLLGCMAFIALVVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMA
                     LAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVA
                     TVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTD
                     VLFTAAADLGRQRNRAE"
     gene            8005..9483
                     /locus_tag="ACFM5C_000380"
     CDS             8005..9483
                     /locus_tag="ACFM5C_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6068154.1"
                     /translation="MFKRSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAAPVVSE
                     KETEAKEDAPQAGSQGQGAPSAQGGQDMAAVSEENTGNGGAAATDKPKNEDEGAQNDM
                     PQNAADTDSLTPNHTPASNMPAGNMENQAPDAGESEQPANQPDMANTADGMQGDDPSA
                     GGENAGNTAAQGTNQAENNQTAGSQNPASSTNPSATNSGGDFGRTNVGNSVVIDGPSQ
                     NITLTHCKGDSCSGNNFLDEEVQLKSEFEKLSDADKISNYKKDGKNDGKNDKFVGLVA
                     DSVQMKGINQYIIFYKPKPTSFARFRRSARSRRSLPAEMPLIPVNQADTLIVDGEAVS
                     LTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPSKGEMLAGTAVYNGEVLHFH
                     TENGRPSPSRGRFAAKVDFGSKSVDGIIDSGDGLHMGTQKFKAAIDGNGFKGTWTENG
                     GGDVSGKFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD"
     gene            complement(9558..9773)
                     /locus_tag="ACFM5C_000381"
     CDS             complement(9558..9773)
                     /locus_tag="ACFM5C_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068155.1"
                     /translation="MFKLGVYACLGLFAGWVLLLIVQLWFSFLKAELFFKITLTMAGL
                     FVIILAALLVFGQYFSEKKMKDDGFIN"
     gene            complement(9766..9982)
                     /locus_tag="ACFM5C_000382"
                     /pseudo
     CDS             complement(9766..9982)
                     /locus_tag="ACFM5C_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
     gene            complement(10057..11400)
                     /gene="argG"
                     /locus_tag="ACFM5C_000383"
     CDS             complement(10057..11400)
                     /gene="argG"
                     /locus_tag="ACFM5C_000383"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFC6068156.1"
                     /translation="MNQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAY
                     TANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAY
                     FNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPW
                     LDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIK
                     IVKPIMGVAFWDENVEVSPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGL
                     GMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLL
                     YQGRWFDSQALMLRETAQRWVAKAITGEVTLELRRGNDYSILNTESPNLTYQPERLSM
                     EKVEDAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLALGEGSVLPQLGNKQ"
     gene            11525..12325
                     /locus_tag="ACFM5C_000384"
     CDS             11525..12325
                     /locus_tag="ACFM5C_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HFC6068157.1"
                     /translation="MNAFNLIIIGDEILHGSRQDKHFVFFKSLLESKGLKLNQVQYLP
                     DEPDLLVRQLRRSFSDGIPTFVTGGIGATPDDHTRQAAAAALELPVVRHPEAAKFIEG
                     VTLKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNIAGFSIREHYFFPGFPVMAHPM
                     AEWVLDTYYVGRFNQTKRGSRSVYVFEQPESRITPLMEHIEQTYPGVRSYSLPSVGWT
                     HSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN"
     gene            12365..13351
                     /locus_tag="ACFM5C_000385"
     CDS             12365..13351
                     /locus_tag="ACFM5C_000385"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HFC6068158.1"
                     /translation="MQYRIRRENEAPEAKNAGETLWERDIMREVLLSAYRDRRRERMW
                     KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKD
                     GMEAAYKNPQAKAIIIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASG
                     CYYIAAAADKIYADPSSIIGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFS
                     PETPEQSKIWEEMLTGIHGEFIKAVKTGRGDRLKFRQYPDVFSGRVYTGADALKVGLV
                     DGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR"
     gene            14008..14270
                     /locus_tag="ACFM5C_000386"
                     /pseudo
     CDS             14008..14270
                     /locus_tag="ACFM5C_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(14308..14682)
                     /locus_tag="ACFM5C_000387"
     CDS             complement(14308..14682)
                     /locus_tag="ACFM5C_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6068159.1"
                     /translation="MIIQNEFNLYPSNMLPERFCYPEKYVRISNDTSLIPYIQPHNFH
                     WWFENYGTEGAEVAYIFRNSILPDLNLIPFASNGEWEAYFDGNDVTGNSRVIVINLDN
                     IENHEFFNSFEDWLELAIKDTW"
     gene            complement(14679..14807)
                     /locus_tag="ACFM5C_000388"
     CDS             complement(14679..14807)
                     /locus_tag="ACFM5C_000388"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068160.1"
                     /translation="MPQTWGEAIQFRIKKQIENELAPPNWSTQFPNGSIYDPKVTK"
     gene            complement(14855..15211)
                     /locus_tag="ACFM5C_000389"
     CDS             complement(14855..15211)
                     /locus_tag="ACFM5C_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMP12 family DNA mimic protein"
                     /protein_id="HFC6068161.1"
                     /translation="MNEHNLLIFCLKDNVSISEYTEMIDWAYKNIQSETVVEITENQI
                     IEYQNRGLWRLVSEITDNWLFGPSEGDWLIDKESILAVKEKLQNSDFSTEPLVKNIIH
                     VLEYAIKNEKTVIFHF"
     gene            complement(15216..15320)
                     /locus_tag="ACFM5C_000390"
     CDS             complement(15216..15320)
                     /locus_tag="ACFM5C_000390"
                     /inference="COORDINATES: protein motif:HMM:NF018014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068162.1"
                     /translation="MDDIRGIIQGAVNPLIYKVSKQKIIYNNKLISGT"
     gene            complement(15354..15698)
                     /locus_tag="ACFM5C_000391"
     CDS             complement(15354..15698)
                     /locus_tag="ACFM5C_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068163.1"
                     /translation="MNLENYENILIKLLFYHNNLVNEYSYFIENKNLFKIVSRTKTSK
                     GFFFTIEKPLNFLSKKTYFEFNFKYLHSGKERFGSFMCWINTNLMEFEGVFFNDLLPD
                     NMIINNFFEIND"
     gene            complement(15857..16258)
                     /locus_tag="ACFM5C_000392"
     CDS             complement(15857..16258)
                     /locus_tag="ACFM5C_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068164.1"
                     /translation="MKLKSLDFPTGYFYFDNAAINSDKVEVIAVGYRNTDKTIKIFIE
                     DVIHFRVVDESYFIDTFMDLISEDADRALLHENGGQSFFELLDECYAEWILKESYFPL
                     NREFFKYYIFMFEQTFIEIIGSSATYSIIEG"
     gene            complement(16262..16714)
                     /locus_tag="ACFM5C_000393"
     CDS             complement(16262..16714)
                     /locus_tag="ACFM5C_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068165.1"
                     /translation="MQTKALGTVDEIGDTVQQVGKQASGQKTSGGNPAIDSDPYSPSS
                     VAARIEAGKARSDLQIKDILSNTTQRSKTKGPAVQYDKVGDYNDALNDFNSLNVRNVQ
                     TRPNGTITGNLPDGRAVNARNDSSGGEPTLEITISNNRKIKIRYGNTR"
     gene            complement(16709..17002)
                     /locus_tag="ACFM5C_000394"
                     /pseudo
     CDS             complement(16709..17002)
                     /locus_tag="ACFM5C_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(17072..17389)
                     /locus_tag="ACFM5C_000395"
     CDS             complement(17072..17389)
                     /locus_tag="ACFM5C_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068166.1"
                     /translation="MKKNIFHNVSLYEIIFSDNGNTLTLSFTDTIEGNYFGYIKCSNI
                     LNFKLDTNNFVDYEDKEDSLFPLFIPEIELYKYQFYSEIIIDVGIIIKISAETINFEP
                     LGK"
     gene            complement(17386..17646)
                     /locus_tag="ACFM5C_000396"
     CDS             complement(17386..17646)
                     /locus_tag="ACFM5C_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6068167.1"
                     /translation="MRPTTRDELRQALQEQGFRRTGSDAAQYETWKGPDGVKIDIRPN
                     GEVIRTQRVPRTDGVQGKYPQRQDYEGNPLPNNHHHSGYFVK"
     gene            complement(17644..17988)
                     /locus_tag="ACFM5C_000397"
                     /pseudo
     CDS             complement(17644..17988)
                     /locus_tag="ACFM5C_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(18414..18758)
                     /locus_tag="ACFM5C_000398"
     CDS             complement(18414..18758)
                     /locus_tag="ACFM5C_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068168.1"
                     /translation="MIIEHNGNIHKIARMTGNKNNFLEIILSDIHENIKIKPLTIKVK
                     GENVINILPEEVSFYVKQGVDLIYEKYKRKFFISEISFCQSDSRPSSIYAFLTFHLLE
                     DIIKNESPSNYT"
     gene            complement(18796..19140)
                     /locus_tag="ACFM5C_000399"
     CDS             complement(18796..19140)
                     /locus_tag="ACFM5C_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068169.1"
                     /translation="MFLDDVNVFLDDLNVFLDDLNTNPITDEWYMSNFADKHIKILES
                     YEAFDILKQFVDYMIEEYDEKSEYEIMEILRQLKYQADTNEKFYTNTQKQKIVELYKQ
                     EISQDILNEIFR"
     gene            complement(19143..19427)
                     /locus_tag="ACFM5C_000400"
     CDS             complement(19143..19427)
                     /locus_tag="ACFM5C_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068170.1"
                     /translation="MAGGNKSLKIGTQSVEKSTGRTIPNNLKEQLAMEEVKANPQGKT
                     PARIPPMSDTKNGWLAKDGWVKRVQNVNKIEIHYIENSRTGEKTDFKFKD"
     gene            complement(19401..19745)
                     /locus_tag="ACFM5C_000401"
                     /pseudo
     CDS             complement(19401..19745)
                     /locus_tag="ACFM5C_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503511.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(19829..20131)
                     /gene="imm40"
                     /locus_tag="ACFM5C_000402"
     CDS             complement(19829..20131)
                     /gene="imm40"
                     /locus_tag="ACFM5C_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Imm40 family immunity protein"
                     /protein_id="HFC6068171.1"
                     /translation="MLNEIFEIYSRQGESLIGIGIREAALPVPIAIDILNLFINERIL
                     VLGGDIYIKKDNYFYQTYDNWYYEGSNLFNSIDKAMHYLSQIKLENAYVSFVLKFI"
     gene            complement(20157..20423)
                     /locus_tag="ACFM5C_000403"
                     /pseudo
     CDS             complement(20157..20423)
                     /locus_tag="ACFM5C_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224185.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(20444..20650)
                     /locus_tag="ACFM5C_000404"
     CDS             complement(20444..20650)
                     /locus_tag="ACFM5C_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPCC family cysteine-rich protein"
                     /protein_id="HFC6068172.1"
                     /translation="MMENSKKTWEIDGEIWLHCPVCGTEVMDYDICDVCQWQNTGETN
                     IDGGPNEMTLAEAKEAYAKGLPIR"
     gene            complement(20616..21056)
                     /locus_tag="ACFM5C_000405"
     CDS             complement(20616..21056)
                     /locus_tag="ACFM5C_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafB"
                     /protein_id="HFC6068173.1"
                     /translation="MAGGNKPPKPSTQQHPTHSDNNIGLPASYVKPDTSISPTGTIQD
                     RIRWTKSKFPTEKSLNGHFKAHGKEFGDITIEDYQKMASDLLSKQTSDKILGYQTEHR
                     RVRYDINNNIYVLANPKTFKIKTMFKPNLGKKYYDGEFKKDMGN"
     gene            complement(21036..21365)
                     /locus_tag="ACFM5C_000406"
                     /pseudo
     CDS             complement(21036..21365)
                     /locus_tag="ACFM5C_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(21471..21842)
                     /locus_tag="ACFM5C_000407"
     CDS             complement(21471..21842)
                     /locus_tag="ACFM5C_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6068174.1"
                     /translation="MIKQNSFVPYPEAMLPKGFKYPQSYLKLAQSTHAINYDEQYSFP
                     WWFENAESNISEVIDIYFEITGIPNLLPFARNQEWAACFDISDKSGNPKIIVVNLDNT
                     KYYETFENFDTWLKEAENDGW"
     gene            complement(21839..22194)
                     /locus_tag="ACFM5C_000408"
                     /pseudo
     CDS             complement(21839..22194)
                     /locus_tag="ACFM5C_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504007.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(22222..22428)
                     /locus_tag="ACFM5C_000409"
     CDS             complement(22222..22428)
                     /locus_tag="ACFM5C_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068175.1"
                     /translation="MNILSINNQNSTISLTQDEVFVLRAILNEIYAGVCVDSREFENV
                     SGVRKHEVDNLQQQFAGIYKKMTT"
BASE COUNT         5441 a         5226 c         5565 g         6357 t
ORIGIN      
        1 cttagctcaa agagaacgat tctctaaggt gctcaagcac cgagtgaatc ggttccgtac
       61 tatttgtact gtctgcggct tcgtcgcctt atcctgattt ttgttaattc actatatcga
      121 ttctgttccc ttgcaggcgg acggcggcgg cggacggtgg aaaagcaggt tttcaaatgt
      181 ccggtttggc ggcgcgccgt ctgaaaaccg cttattttcc tttgctgttt ccggcggagt
      241 cttttttgtc cgaaccggag aagcggtcga aacgtatggt gtatgtcagc tcgccgcccg
      301 acgaacggct accgatacgg gcaaccgcct gtatggcgcg ggtcagccgg taaatcagtt
      361 tgacggactg ttccgcgctg gagatgctgt attcgtagcc gatgtagagt ttgccggtca
      421 gttgtttgcc gacggtcagc acctgttcgg cggggttgag ttcgccggtt tgcgcgttgc
      481 ggctgcgctt gctggtaaag cccaaatcat ccaccagccc gatgcggtcg ttgatttgcc
      541 cggcaagcag cgcgccagcg gctgcggaca gggcggcatt gtcgccgctg ctgccactgc
      601 cggcgcggtt gaggatgagc caggagagct tgtctttttc actcatcggt tcgtttgccg
      661 tcagcgtaat gcgcggactg ttgaggctgc ccaatatttc cacgcccgca ccgacggggg
      721 aaaggcggcg ttcggcgcgg atgttgaggt tggggtcgtt gagcgggccg acaaaggaga
      781 ccgtgccttt ggtaatgtcc aaatcctgcc cgtatgcctt ataacgccct ttgatgacgc
      841 ggaccgtgcc cacgccccgc acgcttccgc ccgattgggc ggtcagggtc agtttgccgc
      901 ctatggtaac gtccgcgccg tagccggcga agcggatgcc gtcattgagg tctaaagtca
      961 ggttcatatt gacggggagc ggtgccgccg cctctttttt gacttcgcct aatacgacga
     1021 catcgtcgcc gacggacggc atcgaggatt tttgcgaacc gaacagcccc tgatccgttt
     1081 taatcatccc ggtaacggat atgccttttt gcggcgaata gcgcaggcgg gtgttgccgg
     1141 aaaccgtcag gcggcggttg gggcgggaca ggatgcggta tttgtcgaac accgcgccga
     1201 tatcgacatc gggtccgctg ttttctatac cgaccgtacc ggagagttcc gccgtccctt
     1261 cgtgccggaa tttcaggctg tcgattaccc atttcctgcc cgcgatatgc gaacgcagcg
     1321 agccgttgtc caagatgatg ccttgggttt ggttgcggta atagagtttg tcgccgttga
     1381 tgctgccgcc caagtgcgga tcggcgatgc tgccgccgag ggttacggcg gcattcaggc
     1441 tgcctttgac ggtttgtccg acgggcagga agttgcggaa tacttcggca tcggcaacgg
     1501 tcaggttgag tttcccgccc aggggcgagg tactgaaaga attactttgc ccgacggtga
     1561 tgttgccgtt gattttcccg tagttgctgc tgacgttgac ggcggcattg acggacggag
     1621 agccgacccg tccgccgatt tgcgcggcgg cattcaggct gccggtaatg ttttgcgcgg
     1681 cggcgggcag aaagggcttc aatgtgccca agtcgggaag ggaggcggta atcctgccgc
     1741 cgagcggtgc atttgccata ttgccgccga aggcgttgcc gatgtccaaa tcggcgttaa
     1801 tccgcccgaa acgcgcgccg ccgtcaagca ggattccgat acggtcgttt tgaaagcgcg
     1861 ttttcaggga aaatgcgttc aaacccaaag cctgcccgcc gggcaatacg gcatcgccgc
     1921 tttgccggct gatattgagg tagccgcgcg cgttgcgccc gtaggcaaca tcccagtcgc
     1981 cgtttaaaac cagattgtgt tcgaagggcg gtttgaagaa attgtgcaac tcggcgatat
     2041 gcagaccgtg tgcgccgcct tttgccgata tgccggtttt tttatcccaa gaaaagtgtt
     2101 gcaggttgag gctgccgccc attgcctgcc aatttgccgc acttgccgcc acgcgttccg
     2161 caccggcttc gagcgtcata cggttttgca gcttgaggtt gaatgcgccg ccgatgtcga
     2221 ggatgccgat gctgcctttc catcgggtaa gttccctgtt gatgccgcct gaagcgtcca
     2281 aatcgaattt gaacggtttg ccatccagcg tcatggcggc gtgtgtgcgg atgcggtgct
     2341 gcacgcccgt gccgtccagc atcaggtcgg cggtatcgac aaccgccgct ccgcccgaca
     2401 gcgaaaggcg gctgcctttg atgtcggcgc gtatcgggcg gcttgtgtcg ggcgaacctt
     2461 tgagcgtgaa atcgagcgaa cggatgtctg ccgccttgcc gatgtgcagg ttgcgcgccg
     2521 cgccggaaag gtcggtttca aaggttcgga tgccgccgtc caaatcaccg gaaaggtgtc
     2581 cgcgtacatt taaagacccc gcgagtccga aaccgaaacg ggataaatcg ggtgcggtga
     2641 tattgaggtt aagccggtcg ccttttttgc cgaagccgcc gtctgtttta ataatgttcc
     2701 gccccagccg caaatcgacg gcggcacgcg gaaggtggcg ggactcgtaa acaatgtcgg
     2761 cactgccggc aatcggtacg ccgttgaacg tgccgggtaa aaaccgcatt ttgcctgtga
     2821 atttctcttt tgccagttcg ccggcaaggt ttattgagcc gttgatattg cctgccggaa
     2881 gttgcggatc gatgcgcgaa gggtcgaatg cgcgggaacg gatgtccagc ttgagcaggc
     2941 ggtctttaaa cagctcgaga tagccttgcg cggtcaggct gccttgcccg gcggcgatgt
     3001 tgacggtgtc gagcaccagt ttccgctgtc cgtttgcggg gtcgcttgca atggcgaggc
     3061 tgccgtccgt gcgcgctgtg ccgatgccga gttgccaaga gattttgggc gaggcggtcg
     3121 tgccaccgat gccgatgctg ccgtccaacc tgcctttgaa cgcggtttgc agcacgtctt
     3181 ccgcgccgac ggagttgatg cctatattta aatcgaggat gtctttttcg gtgtcgattt
     3241 tgcccgacag cctgatgccg ccccgtccga gcagggcggc ggacgtattg ccgatatgca
     3301 ccgtgccgtc ctgccggatg acaaagttgc ctaaaacctg acggacgggg atgccgttgc
     3361 ggtcggcaaa accggcttta gtgttttcca aatcgagcga gccttccagc gcgatgccgt
     3421 ctgaaaacga cgggatggcg gtcaggtcga aattcagccc ggcatcgggc agggaaggca
     3481 cgaaggcgga cggattgatg ttgaaccctt tgaccagtac ttcttccaat gttttatcca
     3541 atgattcggc aaacgggtgg atgacggatt ttcccgagag gcggatattg ccgccgtcga
     3601 tcgccagttc ggcgcgcaca tccttcaggc tgccgctcag ccgagccgta ctgtgtatgg
     3661 ttttgccttc gagtccgcct ttggtgtaaa tggcggtatc gagggcaaac ggttttttca
     3721 agccgaccga ggctgacccc gacgaattgc tccacggcgt gtcggcagcc ttcaggtcga
     3781 ggcggtgtcc tttgatgtca taacggtatg aagcatccag ccgttcgaga tagacggttg
     3841 gtttgtcaaa ggctttgcct gcgctgattt tgcccgtctc gaagcggtcg agatagacgg
     3901 cggcaggcag gtctatgctg tcgggaaggc tgagcggagg gcgttcttct ttaggcggag
     3961 tcggtttggt aacgatggcg atgtcgccgg cggaaatttc ggtgatgtgc aggctgcggc
     4021 gcatcagttc ggacggtttc cacgcgaagc ggaagcggct gattttaagg tctgccccct
     4081 cggtttctat cgaccagttg tcgccgtcga agccgtcgag cagcgtgcct ttgaggtttt
     4141 gggaggaaat gtttacgccg aaccaagacg ggatttggta cagcccgaaa cgcaaaccgg
     4201 attccgtacc ggcgagccag ctgaggaaac atactgccaa aatcaggaca gacagcagtg
     4261 ccgccgacag cttcagcagc gggcggcgtt tttttgccgg cggggtgggg cggtgttcag
     4321 acggcatttt gcgcgtgccg ttttcggtcg gatcggtatc tgtcggtgcg gtatcggtca
     4381 taatgtctgt ttcaaaatgg tttgctgtaa tgccgtctga agcggccgta tcggtttaga
     4441 agcgtgttcc caagctgatg tgccagcgga ttttcttatc gctgtgcccg taggcgatgt
     4501 cgaaggaaaa cggcgcaagc gggctgaacc agcgcacgcc cagtcccgaa ccgtgtttca
     4561 gcttcatacg tttgaaattg gcggcggcat cgcccatatc gtggaatacc gcgccggaaa
     4621 gggtgcgcgt aaacggcagt tggtattcca ggctgcccac caagagggcg cgttcgggca
     4681 ggaccgatcc gttcgggccg gcaagtccga tgctgtcgag ttcgtaaccg cgcacggaag
     4741 acgcgccacc gctgcggaac atcagccccg aggggacatc ggcattgtcg cgggcaaggg
     4801 tgtaacccgc ttgtccgcgt atgatgaacg tgccgagttt cttgttttcg ggcgtgaaga
     4861 aataacctgc gcgggcagag gtgcggatca gcgcggtgga ggacaggaat gtgcccaaag
     4921 tcgtaccgat tttgccgtcg aggtaatggc cgttttcggg atgcagcacg ttgttgagca
     4981 gctggcgttt ccaagaggcg gtcagcatcg tggcgtggct gttgcccaaa tcgatatccg
     5041 agccgggaat tttccggcct tctgcgagaa actctgcccc cagcctggca tcgatgcccg
     5101 cgcggtcgcg cacataccag atgccgccgg agaaggcgcg tttttcgagg ttttgggtgg
     5161 tcgaacggtt gtaggaaacg ttgcttgtcc agtagttgcc ccgatagttg cgcggctggc
     5221 tgatgccggc ggcaagcgtg gtttcgtatt tgtccatatc ccagacgacc gagccgatat
     5281 agcctttgtt gaagaggttg taatagtcgt aggcgatttt gccgcccaaa ccgtattccg
     5341 aatcgaggcg gatgccggtt tcgagcttgt ggcgtttgac ctcggttacg ctgactttga
     5401 cggggacgcg gtcgccttgg agacggtcga agtcggcttg tacggacgcg ccggaataat
     5461 gcccgttttg ttcgagtgcc tgttggaagt cgagcagcag gtcgaggtcg tagggcgtgc
     5521 ccggttggaa gcgcgccagg ccggagacga tttgttcggg gtaacgctgt gtgccggtga
     5581 tttcaaagtc gccgaaggcg atggggcggc cgctgtccac gacgacgttc aaatcgacgg
     5641 tggcggtatc ggggttgacg gccgcccggg tgttgccgag cttggcaagc gggtagcctt
     5701 tgcgcgttac cgcgccgagg acggaagttt tgctgttttc ccaactgtcc tgatcgaaat
     5761 cgctgcctac cggctgctgc cagttttcca gcgcgttgcg gtagtattcg gcgaggttgc
     5821 cgtctgaaag gatgtcgccg aggatggcga cgccgacgtt ggcgattttg gtgcgcgggc
     5881 ccggtgtgat gtgcaccgta taagctccgt ctttttccgt cagactgact ttgctgctga
     5941 aatagccttt gctgcggagc atcgttttaa cgttgtccgg tgcttcttcg gcgaggaagc
     6001 ctgtctgttc cttatccaaa acctcttcct gctgctgcgt gataagcggc aggtgttctt
     6061 cgaccatatc tttgatttca ctgtcctgcg tgtcgatgcg gacggggaat ttgggtttta
     6121 atttaactga ttcggtgtca gggcttttgt ttttgaacaa tgcgaaaccc gccgccttgt
     6181 tttcggaaag gtcggcggca ggcgcgtatg cgtgcggaaa gaaaaataaa gccggcagga
     6241 gcagggcggt cggtttgatc atcatggtac gggtgtcgtg catcggtgtg gcggatttcg
     6301 attctaacac tgttcggacg gggcgggacg cttcagacgg catactgccg ccggtatttc
     6361 ggaggttgcg gcccgccgga aatgtatctg cttgttttag ggtattttgt ttctaatccg
     6421 tatatggaaa acaggctgcg tttcggaata gtgccggaaa ataggcagga ttaaataaat
     6481 ttattttcgt tcaataaatt aaaccgttgc gccgaatgat aaagcaaagc ctgtccggca
     6541 ctgcataggg caaatcaatg caaccttaaa acacagccga aaaataaaaa aaacacagag
     6601 aatgagtttt cttttaaaat acaacatttt ttaacatatc acaacataag gaagaattat
     6661 ggcgttcggc aaatccttat ttcatgcgat cggccgcgtc agcctggtca ggcagattgc
     6721 cgccggtttg gcgttgggta tcgtaatcgg ttcggtttcc ccgcaactgg gcttggcggc
     6781 aggcttgttc ggcagcctgt ttgtcggcgc gctcaaagcg gtcgcgccgg ttttggtatt
     6841 tattttggtg gcggccacaa tcgcgcagca ccaaaaaggc aacaaggcgc atatcaggcc
     6901 gattatcgtc ctttacctca tcggtacgtt ttccgcagcc ctgaccgccg tcatcgctgg
     6961 tatggttttc ccgacgcaca ttgttttggc gggcgcgggc gatgtgtccg ccgcgccgcc
     7021 ttccggcatt gtggaagtat tgaaatcgct gctgatgaac ctggtcgcca acccgattaa
     7081 cgcgattgcc aatgccaact atatcggcat tttggcttgg gctttggttt tgggcgcggc
     7141 gttgcggaat cacggttcgg acgttacgcg gcaggtcgtt gccgatttgg cggaagcggt
     7201 ttccaccgtc gtgaaatgga ttatccgttt tgcccctttg ggcattttcg ggctggtgtc
     7261 gtccacaatc gcggagacgg gtttcggcgc gctggcgggt tatgcgaagc tgcttgcggt
     7321 actgttgggc tgtatggcgt ttatcgcgct ggtggtcaat cccgccatcg tgtggtggaa
     7381 aatccgccgc aacccttatc cgctggtgtt tacctgcctg cgcgaaagcg gcgtgtatgc
     7441 cttctttacc cgttcttccg ccgccaatat ccccgtgaat atggctttgg cgaaaaaact
     7501 ggggctgcac gaagacactt attcgatttc catcccgttg ggggcgaccg tcaatatggg
     7561 cggcgcggcg attacgatta ccgttttggc tatggcggcg gcgcacaccc aaggcataca
     7621 ggttgatttt gccaccgcgc tgctgttgag cctggtggcg acggtcagcg cgtgcggcgc
     7681 gtccggtgtg gcaggcggtt cgctgctgct gattccgctg gcgtgcagcc tgttcggcat
     7741 cagcaacgat gtcgctatgc aggtggtcgc cgtcggcttt atcatcggcg tgattcagga
     7801 ttcggcggaa acggcgttga attcttcaac cgacgttttg tttaccgctg ccgccgattt
     7861 gggccgacag agaaaccggg cggaataaac caagctatgc cgtctgaagc ccgttcggcg
     7921 ttcagacggc atatttttac aattttatag gcatacggcg gaaacaatgc cggctttgct
     7981 ttattgaata cgaaggagat gatgatgttt aaacgcagcg taatcgcaat ggcttgtatt
     8041 tttgcccttt cagcctgcgg gggcggcggt ggcggatcgc ccgatgtcaa gtcggcggac
     8101 acgctgtcaa aacctgccgc ccctgttgtt tctgaaaaag agacagaggc aaaggaagat
     8161 gcgccacagg caggttctca aggacagggc gcgccatccg cacaaggcgg tcaagatatg
     8221 gcggcggttt cggaagaaaa tacaggcaat ggcggtgcgg cagcaacgga caaacccaaa
     8281 aatgaagacg agggggcgca aaatgatatg ccgcaaaatg ccgccgatac agatagtttg
     8341 acaccgaatc acaccccggc ttcgaatatg ccggccggaa atatggaaaa ccaagcaccg
     8401 gatgccgggg aatcggagca gccggcaaac caaccggata tggcaaatac ggcggacgga
     8461 atgcagggtg acgatccgtc ggcaggcggg gaaaatgccg gcaatacggc tgcccaaggt
     8521 acaaatcaag ccgaaaacaa tcaaaccgcc ggttctcaaa atcctgcctc ttcaaccaat
     8581 cctagcgcca cgaatagcgg tggtgatttt ggaaggacga acgtgggcaa ttctgttgtg
     8641 attgacgggc cgtcgcaaaa tataacgttg acccactgta aaggcgattc ttgtagtggc
     8701 aataatttct tggatgaaga agtacagcta aaatcagaat ttgaaaaatt aagtgatgca
     8761 gacaaaataa gtaattacaa gaaagatggg aagaatgacg ggaagaatga taaatttgtc
     8821 ggtttggttg ccgatagtgt gcagatgaag ggaatcaatc aatatattat cttttataaa
     8881 cctaaaccca cttcatttgc gcgatttagg cgttctgcac ggtcgaggcg gtcgcttccg
     8941 gccgagatgc cgctgattcc cgtcaatcag gcggatacgc tgattgtcga tggggaagcg
     9001 gtcagcctga cggggcattc cggcaatatc ttcgcgcccg aagggaatta ccggtatctg
     9061 acttacgggg cggaaaaatt gcccggcgga tcgtatgccc tccgtgttca aggcgaacct
     9121 tcaaaaggcg aaatgctcgc gggcacggca gtgtacaacg gcgaagtgct gcattttcat
     9181 acggaaaacg gccgtccgtc cccgtccaga ggcaggtttg ccgcaaaagt cgatttcggc
     9241 agcaaatctg tggacggcat tatcgacagc ggcgatggtt tgcatatggg tacgcaaaaa
     9301 ttcaaagccg ccatcgatgg aaacggcttt aaggggactt ggacggaaaa tggcggcggg
     9361 gatgtttccg gaaagtttta cggcccggcc ggcgaggaag tggcgggaaa atacagctat
     9421 cgcccaacag atgcggaaaa gggcggattc ggcgtgtttg ccggcaaaaa agagcaggat
     9481 tgatgccgat gccgcctgaa gcgggggcgt tcagacggca ttgtgatgtt tggggtgggg
     9541 tccggttcaa gtccgcatca gttgataaac ccgtcgtctt tcattttctt ttcggaaaaa
     9601 tactggccga ataccagcag ggcagcgagg atgatgacaa acagtcccgc catagtcaga
     9661 gtgattttga aaaacaattc cgctttgaga aaagaaaacc agagttgcac aatcagcagc
     9721 agcacccagc cggcaaacag tccgagacag gcataaacgc cgagcttaaa cacgatcccg
     9781 ctccaaaatg acgacgtagg cctcgcgttt gaaaaacagc agcatacggc gcaaatcttt
     9841 ttccatcgtt acgacccgcc agccttcggg ggatttgttt gttgaggaac gcgctgaaat
     9901 tgacggggtt gacctttgcc gcgccgaaaa acaggctgga caacaggctt tcctgataaa
     9961 tgacgacttt gtattctttc ataggattcc ttttaacata agggatcatc ttttcagacg
    10021 accccttaag ttgctaatga tgcaaaacag caaaccttat tgcttattgc ccaactgcgg
    10081 caataccgag ccttcgccca atgccaataa accgctttgc gagtagatgc ccagtttggc
    10141 gcgggtgtcg gtgatgtcga ggttgcgcat agtcagttgt ccgatacggt cgagcggtgt
    10201 gaacgctgcg tcttcgactt tttccatact caggcgttcg ggttggtagg tcaggttggg
    10261 cgattcggtg ttcagaatcg agtagtcgtt gccgcgacgc aattcgaggg ttacttcgcc
    10321 ggtaatggct ttggcgaccc agcgttgggc ggtttcgcgc aacatgagtg cttggctgtc
    10381 gaaccagcgg ccttggtaga gcaggcggcc gaggcgcagg ccgttgatgc ggtattgttc
    10441 gatggtgtcc tcgttgtgga tgccggtaac caagcgttcg taggcgatgt ggaacaatgc
    10501 catgcccggg gcttcgtaga tgccgcgcga tttggcttcg atgatgcggt tttcgatttg
    10561 gtcgctcatg cccaagccgt ggcggccgcc gatgcggttg gcttcgagga agagttcgac
    10621 gggatcggcg tattctttgc cgttcagtgc aaccggcacg ccttcttcaa agcgcacgct
    10681 gacttcttcg gggctgactt cgacgttttc gtcccaaaag gcaacgccca taatgggttt
    10741 gacgattttg atgcccgagt tcaaaaattc caagtctttg gcttcgtggg tggcacccaa
    10801 catattggaa tcggtggagt aggctttttc caccgacatt ttgtagttga agccgttggc
    10861 aatcagaaat tcgctcattt cgtgacggcc gccgagttcg tcgataaatt gctgatcgag
    10921 ccagggtttg tagattttca gcgcgggatt ggtgagcaaa ccgtagcggt agaaacgctc
    10981 gatgtcgttg cctttgtagg tgctgccgtc gccccaaata ttcacatcgt cttctttcat
    11041 ggcggaaaca agcatcgtgc cggttacggc gcgacccaga ggcgtggtgt tgaaataggc
    11101 gatgccgccg gtggaaacgt ggaacgcgcc gcattggatg gcggcgatgc cttcgtgtgc
    11161 caactgcgcg cggcagtcga tcaggcgggc gttttccgca ccgtattcca ttgctttttt
    11221 gggaatggca ttgtagtcgt cttcgtcggg ctggccgagg ttggcggtgt aggcgtaagg
    11281 cagtgcgcct ttgagtttca tccacaacag cgcggcagag gtatcaagac cgccggagaa
    11341 agcgatgccg actttttgac cgacggggag gttttgtaaa atagtatggt tttggttcat
    11401 gaaaaaatcc tcggtagctt gaaaaatcaa agccattatc ttataaatag gaaatattgt
    11461 cagccatcat gccgtctgaa cgggtattcc gccgtttcag gcggtattta aaaccgaaaa
    11521 cattatgaac gcgttcaacc tcatcatcat cggcgacgaa atcttacacg gcagccgcca
    11581 agacaagcat ttcgtctttt tcaaatccct gctcgaatcc aaagggctga agctcaatca
    11641 ggtgcaatat ctgcccgacg aacccgattt gctggtcagg caactgcgcc gcagcttttc
    11701 agacggtata ccgacgtttg ttaccggcgg catcggtgct acgcccgacg accacacgcg
    11761 ccaagcggcc gccgccgctt tggagttgcc cgtcgtccgc catcctgaag ccgccaagtt
    11821 tatcgaaggc gtaaccctga aacgcggcga gccgctcgat tcgcccgaac acgcccaacg
    11881 cctgaaaatg gcagatttcc ccgaaggcgc ggaattggtg cccaatccgt ttaacaacat
    11941 cgccggattt tctatccgcg agcattattt tttccccggc ttccccgtga tggcgcaccc
    12001 gatggcggaa tgggttttgg atacttatta cgtcggccgc ttcaaccaaa ccaaacgcgg
    12061 cagccgcagc gtgtatgtgt ttgagcagcc cgaatcgcgc attacgccgc ttatggagca
    12121 tatcgagcaa acttatcccg gcgtgcgttc gtacagcctg cccagcgtcg gttggacgca
    12181 ttcagacggc acgcaggtca aaccgcacat tgagttcggc atcaaagccg aaggagaagc
    12241 cgtcaacctt ttggacgcgg cgtgggcgga agtgttgcac agcttggacg gattgggagc
    12301 agagctgaaa aatcgggtaa actgaaaacc gtttgcccaa atcggacgat atttaaggaa
    12361 aaccatgcaa taccgaatca gaagagaaaa cgaagcaccc gaagcaaaaa atgcggggga
    12421 aaccttatgg gagcgcgaca tcatgcgcga agtgctgctg tccgcctatc gggacaggcg
    12481 cagggagcgg atgtggaaaa acatctggcg cgccgtcagc accctgattc tggttgccct
    12541 gattgcaggc attttccaaa aagacgaagc cgcattgcag ttggcgggca acacgccgca
    12601 taccgcagtc gtcaacctgt acggcgaaat cggcaacggt gtagaagacc aggtcaaaaa
    12661 actcaaagac ggtatggagg ccgcctacaa aaacccgcag gcaaaagcca tcatcatccg
    12721 cgccaacagt ccgggcggct ctcccgtcgt atccaatact gcctttgagg aaatacgccg
    12781 tctgaaagcg caacatcccg gcatccccgt ttatctcgtg gcggaagata tgtgcgcgtc
    12841 cggctgctac tacatcgcgg cggcggcgga caaaatctat gccgacccgt ccagcatcat
    12901 cggcagcatc ggcgttatcg gcagcagttt cgacgcgacc ggcctgatgg aaaaaatcgg
    12961 cgtgaaacgc agggttaaaa ttgcaggcag caacaaaggc atgggcgatc cgttttcgcc
    13021 cgaaacgccc gaacagtcga aaatctggga agaaatgctg accggcatac acggcgagtt
    13081 catcaaagcc gtcaaaaccg gacgcggcga ccgcctcaaa ttccgacaat atcccgacgt
    13141 gttcagcggt cgcgtgtaca caggcgcgga tgcgctgaaa gtcgggctgg tggacggact
    13201 cggcaatatt tacagcgtgg cgcgagacgt ggtcaaagcc cccgatgtgg tggattacac
    13261 tccgaaggac gatttcggca gaatcttggg cagacgcttc ggcgcagaac tcaaagcaag
    13321 cgtgcgcgaa gccctgcagg ccgtccggta gcgttgttta cagtatttct aagggaatac
    13381 caaaataaaa atatacacaa aaacactcac ctccccagta tgctgccact aagtcagccg
    13441 cgtcactatt taccgtgcac ttaaagccgt aaaaggcagg ttgtccccgg gaggttttgt
    13501 gcatcctgat accgatcggt tgttgttgct caaaggacag aaggccgctg ataaacgaga
    13561 ttacctgttt gtcgctattg acgattttta tactctgcca ttttgccgga caaaaccgca
    13621 gacagtgctg ccaagtttct gaccgaacat ctgtccgacc cctgcttgta cctgattgag
    13681 tacgtttact ctgacaatga taggtaatat aaagagccgt ccaacatgct ttcggtgcag
    13741 cttgttatga taatgggatt ggttggaggc ttgcccgatt tgcttgtccg cagaccaacg
    13801 gtaaggcgga gcgggttatc cgtaccttga tggagatgtg gcatgaggaa cagtcgtttg
    13861 acagtccgga acatcggcaa aaggagttgt gctgctttat taatttaggg gctgccctag
    13921 atcactaggg aaattcaaat taagttagaa ttatccctat gagaaaaagt cgtctaagcc
    13981 ggtataaaca aaataaactc attttgttat cgtggctatg atgtattgga tgcgggcgaa
    14041 tttagccatt tccgtatcaa tcacagcaca cattttgccg aacgacaaaa ccatattaat
    14101 ggaactgaga acttttggaa tcaagcaaaa cgtcatttac gcaagtttaa cggcattccc
    14161 aaagcgcatt ttgagctgta tttaaaggag tgcgaatggc gttttaacaa cagtgaaata
    14221 aaagttcttg ttccatttta aaacaattag taaaatcgag tttatcctag ttgtccaggg
    14281 cagcctcatc tctttataga tagctgctta ccaagtatcc ttaattgcta attcaagcca
    14341 atcttcaaaa ctattaaaaa attcatggtt ttctatatta tctaaattaa tgacaataac
    14401 cctagaattt cctgttacat cattaccatc aaaataagct tcccattctc cattactagc
    14461 gaatgggata agatttaaat caggcaggat agaatttcta aatatataag ctacttctgc
    14521 cccttctgtt ccataattct caaaccacca gtgaaaatta tgtggctgaa tataaggtat
    14581 taaagatgta tcgttagaga tacgaacata cttttcagga taacaaaacc tttcaggaag
    14641 catattacta ggatataaat taaattcatt ttgaataatc atttcgttac cttaggatca
    14701 taaatactac cattaggaaa ctgggtagac caatttggtg gtgctagttc attttcaatt
    14761 tgttttttaa ttctaaattg aatagcttct ccccatgttt gcggcatcta atgctgcttg
    14821 ctctgcatca atattactaa aaattggatt agtctcaaaa atgaaaaatt actgtttttt
    14881 cattttttat agcatattca agtacatgaa taatattttt cactaagggc tctgtagaaa
    14941 aatctgaatt ttgtaatttt tcttttacag ccaaaatact ttccttatct attagccaat
    15001 ccccctcact tggtccaaat aaccaattat cggtaatttc agaaacaagt ctccataatc
    15061 cacgattttg atattcaata atttgatttt ccgtaatttc tacaactgtt tcagattgaa
    15121 tgtttttata agcccaatca atcatttcag tatattcact aattgaaaca ttgtctttta
    15181 aacagaaaat taacaggttg tgttcattca tttgtctaag ttcctgatat gagtttgttg
    15241 ttgtaaataa tcttttgctt gcttaccttg taaattaaag gattaaccgc accttggatg
    15301 atgccgcgaa tatcatccat acggttaccc caccaatttt tattggtgta tcgttaatca
    15361 tttatttcaa aaaagttatt tattatcata ttatcaggga gcaggtcgtt aaaaaaaacc
    15421 ccctcaaatt ccattaaatt agtatttatc cagcacataa acgaaccaaa gcgttctttc
    15481 cctgagtgta aatatttaaa attaaactca aaataagttt ttttgcttag aaaatttaat
    15541 ggtttttcta tagtgaaaaa aaagccctta ctcgttttcg ttcgagatac tattttaaat
    15601 aaatttttat tttcaataaa ataagaatat tcatttacta agttgttatg ataaaaaagt
    15661 aattttatta aaatgttttc ataattttct aggttcattt ctagctcaat ttaaaatgat
    15721 ttcattgttg ccgtaccaat gcgaaattta ccatcaacaa aatttccctt cactgataca
    15781 ggtacaccat caacttgggt agttttattt tcaggctgcc tgaaagaaag ataggcaact
    15841 tattactcat cttacgctag ccctcaataa ttgaatacgt tgcactagaa ccaattattt
    15901 ctatgaatgt ttgctcaaac ataaaaatat agtatttaaa gaattctcta ttcaaaggaa
    15961 aataactttc tttcagtatc cattccgcat aacactcatc aagaagttca aaaaaagatt
    16021 gaccaccatt ttcatgaagc aaagctctat ctgcatcttc cgaaattaaa tccataaaag
    16081 tatctataaa atacgattca tcaacaaccc taaaatgaat aacatcttca ataaaaattt
    16141 ttatggtttt atccgtattt ctataaccaa ctgctataac ttctacttta tcagagttta
    16201 ttgctgcatt atcaaaatag aaatagccag ttgggaaatc taagcttttt aatttcataa
    16261 tttatcgtgt atttccatat ctgattttta tttttcggtt attactaatt gttatttcaa
    16321 gtgttggttc tccaccacta ctatcattac gagcattaac cgcacgccca tcaggtaaat
    16381 tgcccgttat cgttccatta ggacgtgttt gtacatttcg aacattcaga ctattaaaat
    16441 catttagtgc gtcattgtaa tcccccactt tatcatactg aacagcggga ccttttgttt
    16501 tactcctttg agtagtattg ctcaaaatgt ctttgatttg taaatcactg cgcgccttac
    16561 cggcttctat gcgagctgcc acactactcg ggctataggg gtcgctatca atcgcaggat
    16621 taccaccgct ggttttttgt ccgctagcct gtttcccaac ctgctgtact gtatcgccaa
    16681 tttcatctac cgtacctaac gccttagtct gcatatggcg aacagcaggt tttttatagc
    16741 cggtattttt aacccaatcc catttggtcg ggttaagttc tactttttta cctctccaaa
    16801 ccgtacctgc ggcctctgct acggcaaggg cagtttgggc tgttgctgtt atattcggat
    16861 gggcatcagc ccattgtctg gcggaattga tgccgtcttt taccgcaaaa gcactgtcct
    16921 gtaatatgct cgcggcagca agttgtgctt ccgggcttaa ttttcctgaa ttattaatac
    16981 cttgtagagt ctgctgcgca gagatgtagc aactgtattt ttaccccgtc gggtaaaaat
    17041 acagttgcta cggctgctgg gaaagcagtt actattttcc cagtggctca aaattaattg
    17101 tttcagcaga tatttttata ataatcccta catcaataat aatttcacta taaaattggt
    17161 atttatatag ctctatttcg ggtataaaca agggaaacaa gctatcttcc ttatcctcat
    17221 aatctacgaa attatttgta tctaatttaa aattcaaaat attactgcat ttgatatatc
    17281 cgaaataatt accttcaatt gtatctgtaa aagataatgt aagggtattt ccattatcgg
    17341 aaaagattat ttcataaagg cttacattgt gaaaaatatt ttttttcatt tgacaaaata
    17401 tccagaatga tgatgattat ttggcaatgg attgccttca taatcttgtc gttgcggata
    17461 ttttccctgt acaccatcgg ttcgcggcac tctttgggtt cttataacct ctccatttgg
    17521 acgaatatct attttcacgc catcaggacc tttccatgtt tcatattgag ccgcatctga
    17581 accagtacgt ctaaaacctt gttcttgcaa tgcttgacgt aattcatctc gcgtagttgg
    17641 tctgatagat ttaacaactg gcttgtttcc tcctgccatc tcaccgtcca acgtctgcat
    17701 agggcgggca gcaggtgttt tatagccgtt atttttaacc caatcctatt tggtcgggtt
    17761 aagttctact tttttacctc tccaaaccgt acctgcggcc tctgctacgg caagggcagt
    17821 ttgggctgtt gcagttatat tcggatgggc atcagcccat tgtctggcgg aattgatacc
    17881 gtcttttacc gcaaaagtac tgtcctataa tgcgcttgcg gcagcaagtt gtgctttcgg
    17941 acttaaattt cctaaatcat taataccttg taaagtttgc tgcgcagaga tgtaggtcgg
    18001 atatttgtat ccgacaaaaa tatttgacgc atctatcgtt tccgaaatgc cgctgttgga
    18061 aaatgtcgga ttcgagaatc cgacctacgg ctatttcgtt taagtcataa atagccattc
    18121 atgttccttc tgaatttgct tttgctatcc ttagaaccaa tcatataaac attatcatca
    18181 ttaattaatg ttctaagttt atgaagcggt caaatctgtc aaactaccag agatgaagca
    18241 tatcctcctg gaagtaattc tgttcgtgct gtttccatat cttctttgcc atcatcagtt
    18301 acttctctgt ctaaataaaa tcttacgata agtttttgtc taatttcatc aaattctgcc
    18361 gtaattaatc ttatattgat atgaatacac ggttcatacc tgctattagc cagtcaggtg
    18421 tagttggatg gggattcatt tttaataata tcttcaagca agtgaaatgt aagaaaagcg
    18481 tagatacttg aaggccggct atctgattgg caaaaagaaa tttcggagat aaagaatttc
    18541 cgtttatatt tttcataaat taaatcaaca ccttgtttta cataaaaact aacttcctca
    18601 ggaaggatat ttataacatt ctctcctttt acttttatag ttaatggttt gatttttatg
    18661 ttttcatgaa tatctgatag gattatttct aaaaaattat ttttatttcc agtcattctg
    18721 gctattttat gtatatttcc attgtgttcg attatcattt tattttttcc aaggatttcc
    18781 ttctatattg atagtttatc taaagatttc atttaaaata tcctgactaa tttcttgttt
    18841 atataattct acaattttct gtttctgtgt atttgtataa aatttttcgt tggtatctgc
    18901 ttgatatttt aattgtctca atatttccat gatttcatat tctgattttt catcatattc
    18961 ttcaatcatg taatcaacaa attgttttag aatatcaaag gcttcgtaac tttccaaaat
    19021 tttaatatgt ttatcggcaa aattggacat ataccattcg tcagtgattg gattagtatt
    19081 taaatcatct aaaaaaacat ttaaatcatc taaaaaaaca tttacatcat ctaaaaacat
    19141 gactaatcct taaacttaaa atctgttttc tcaccggttc ttgagttttc aatgtaatgt
    19201 atttcaattt tgtttacgtt ttgaacacgc ttaacccaac cgtcttttgc taaccaacca
    19261 tttttagtat cggacatagg aggtattctc gcaggagttt tgccctgtgg gtttgcctta
    19321 acttcttcca ttgctaattg ttcctttaaa ttattaggta ttgtacgacc ggttgatttt
    19381 tcaacagatt gtgtccctat ttttaatgat ttgtttcccc cagccatttc cccgtctaca
    19441 gtctgcatag ggcgggcagc aggtttttta tagccggtat ttttaaccca atcccattta
    19501 gtcgggttaa gttctacttt tttaccgcgc caaaccgtac ctgcggcctc tgctacggaa
    19561 agggcagttt gggctgttgc agttatattc ggatgggcat cagcccattg tctggcggaa
    19621 ttaatgccgt tttttaccgc aaaagcactg tcctgtaata ggctcgcggc agcaagttgt
    19681 gcttccggac ttaaatttcc taaatcatta ataccttgta gagtctgctg agcggctgta
    19741 tctgagccgg tcagtgtagg ttggattaaa acccagcatt ttcaacatct tgatgtttta
    19801 ctataaatct attcttgtgc ttcctttgtt agataaattt caacacaaaa gatacgtatg
    19861 cattctctaa ttttatttga gataaataat gcattgcttt gtcgatactg ttaaataaat
    19921 tacttccctc gtaataccaa ttatcatatg tttgataaaa ataattatct ttcttgatat
    19981 aaatatctcc ccccaataca agtattctct cattgataaa taaatttaat atatctattg
    20041 caatagggac gggtaatgcg gcttctctaa ttccaattcc tatcaaagat tccccttgtc
    20101 tcgaataaat ttcaaaaatt tcatttaaca tgttaatctc tatctactat ttttcaatcg
    20161 gtataaaccc tattcacagt ttcatcttgt atttctttat gaatacttaa tatattaaga
    20221 tagcttagga attttatttt ctcagattga ggcaactcat caaaaccaag ccaacaataa
    20281 aaattgttat atgattttaa aaaatcaaca atttttattt ttcctaaaac caaatcttcg
    20341 actaactggg ttgcataaat aatatcattt atgattttaa caggtaaatt atttgatagg
    20401 taaccatggg attccgtcat cattgatttc tctaggtgct tatttatctg attggtaagc
    20461 cttttgcgta agcttctttc gcctccgcaa gtgtcatttc attagggcca ccatctatat
    20521 tagtttctcc tgtattttgc cactgacaaa cgtcacagat atcatagtcc ataacttcag
    20581 ttccgcaaac aggacaatgt agccatattt ctccgtcaat ttcccatgtc ttttttgaat
    20641 tctccatcat aatacttctt tcctaagttt ggtttaaaca ttgttttgat tttgaatgtt
    20701 tttggattgg ccaaaacata gatattgtta ttgatatcat agcgcactcg tctatgttcc
    20761 gtctgataac ctaatatctt gtccgatgtc tgttttgata acaaatcaga cgccattttt
    20821 tggtagtctt caatggttat atcgccaaat tcttttccat gagctttgaa atgtccattt
    20881 aaagatttct cagtaggaaa cttggacttt gtccatctga tgcggtcttg aattgttcct
    20941 gtcggagaaa tagatgtatc aggtttaaca tatgaggcag gtaagccgat attgttatca
    21001 gagtgtgtag ggtgttgctg cgtacttggt tttggtggct tattcccacc tgccatctcc
    21061 ccatctaaag tctgcatagg gcgggcagca ggtgttttat agccggtatt tttaacccaa
    21121 tcccatttgg tcgggttaag gtttactttt ttaccgcccc aaaccgtagt tgcggcttct
    21181 gctacggaaa gggcagtttg ggctgttgca gttatattcg gatgggcatc agcccattgt
    21241 ctggcggaat taatgccgtc ttttaccgca aaagcactgt cctgtaatag gctcgcggca
    21301 gcaagttgtg cttccggact taaatttcct aattcattaa tatcttgtaa agtttgctgc
    21361 gcagagatgt aggtcggata tttgtatccg acaaaaatat ttgacgcgtc tatcgtttcc
    21421 gaaatgccgc tgttgaaaaa cgtcggattc gagaatccga cctacggctg ctaccaacca
    21481 tcattttcag cttcttttag ccaagtatca aaattttcaa aagtctcgta atattttgta
    21541 ttatctaaat taactactat aattttagga ttacctgatt tatctgaaat atcaaaacag
    21601 gcagcccact cttggtttct agcaaaaggt aataggtttg gaatgccagt tatttcaaaa
    21661 taaatgtcaa ttacttctga tatattgctt tctgcatttt caaaccacca aggaaaagaa
    21721 tattgttcat cgtagttaat ggcatgagtg gattgagcta attttaaata actttgcgga
    21781 tatttaaatc ctttaggaag cattgcttca ggatacggaa caaaactatt ttgttttatc
    21841 atttcctaag tacctttaca tcataaatac ttccgttagg aaatcttttg ctccaccctt
    21901 ctggaactcc tttttgtgtt tcttgctttc taattcgtag ctggatagct tctccccaag
    21961 tttgaggctc aataccatca tgcttaaacc tgattctctc ttttgatgat aatcggtcat
    22021 taaaattatg aacattcgct tccactttta cccctgcttc acgtgctgcc ataatacgcg
    22081 tgttatccat actagtaggt gctccatcag gcatattaac aacatcaacc ctgtcgccaa
    22141 cccatgattt ttttctttca tttcggctac aatagaatca tagttgtaat ttgcactagg
    22201 ctctgacaaa aatttgggtt gttaagttgt cattttttta taaattccag caaactgttg
    22261 ttgtaaatta tctacttcat gttttctaac accagataca ttttcaaatt ctcttgaatc
    22321 tacacatacg cccgcatata tctcattcaa gatagctcgt aaaacaaaaa cttcatcttg
    22381 agttagtgaa atagttgagt tttgattatt tatggatagt atattcatgg ctttttccta
    22441 taaatcatca taatattttt tacctgatgt tggtctaaat gctgtacctc catcgtcaga
    22501 atttttatct cggataacta ttgtccctgt tttatcatcc caatacgcag ttctaccgcg
    22561 aggtaactct ttcatatttg ttggatggc
//
LOCUS       DAXHNP010000014        22357 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.014, whole genome shotgun sequence.
ACCESSION   DAXHNP010000014 DAXHNP010000000
VERSION     DAXHNP010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22357
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.014"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            1..99
                     /locus_tag="ACFM5C_000410"
                     /pseudo
     CDS             1..99
                     /locus_tag="ACFM5C_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(120..1034)
                     /locus_tag="ACFM5C_000411"
     CDS             complement(120..1034)
                     /locus_tag="ACFM5C_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6068176.1"
                     /translation="MDAVQLKSFVAVAHEGNLTQAAKRLFLSQPAVSAQIKALEEYVG
                     TPLFRRTGKGMVLTRAGEILLPEAESLLQYKHKLEHFAKTLAGDYSEETSLGIIHPID
                     SAKLVALTDNIGQTAPKTRLHIQYGMSGEILSRIQHKTLHGGFILGNAAQRGIRSVFL
                     QNLTYALICPQSQYPHLTRSLPQSLQECVWIEMSGVSGSRKHLHQFWRSNRLSPKKQI
                     LCDYPQTIIDLVAGGIGVAMVPGNKAEAAAKEGAGVAIIESCRHSMPLNFIYAEEYED
                     NPHVSLLLECIEKVWGVQAVQPPVVSDN"
     gene            1302..2771
                     /locus_tag="ACFM5C_000412"
     CDS             1302..2771
                     /locus_tag="ACFM5C_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3360 family protein"
                     /protein_id="HFC6068177.1"
                     /translation="MDKHNGTYRDLHRPASEFATRDEYLEHELQIMQPKRWRPNLPFR
                     DYRFEWEDLIPAMAGTIGKVVMVGAVAAAFAAPLGLPDSFVLENVRYELLIAAAFILL
                     VSGFFLPGANLPGTHGPLIPMIPIVVSAGGHPLAFGISIAVLGLLMALFRGGSIMAKL
                     TSNGVCGGLLLYLGFIGTTGQVKKLFSWAGGFNMPYIAFTVIIVTIVMYALLEHWKKR
                     WLAVPLGCLIAGVVAFALGAPFEFHTAPGLPPMSPAYWWGENSGWHLGLPTAESFLVV
                     FPFAVLAVAMWSPDFLGHQVFQKISYPEKTDKVLMNIDDTMTSCSVRQAVGSILGGAN
                     FTSSWGTYIVPASIAKRPIPGGAVLTAVLCIIAGLWGYPMDLAIWQPVLSVALVVGVY
                     LPLLEAGMEMTRKGKTTQSAAIVVFSSALVNPVFGWALTMLLDNLGLIGCKERSAQLG
                     FAGRVLIPAVGFLILCVAMGAVGMLPGIPPFLEHFKSLG"
     gene            3023..3394
                     /locus_tag="ACFM5C_000413"
     CDS             3023..3394
                     /locus_tag="ACFM5C_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068178.1"
                     /translation="MNKTLSILPVAILLGGCAAGGGNTFGSLDGGTGMGGSIVKMAVG
                     SQCRAELDKRSEWRLTALAMSAEKQAEWENKICACVAQEAPERMTGNDVMQMLAPSTR
                     NQALAALTAKTVSACFKHLYR"
     gene            3467..4876
                     /gene="thrC"
                     /locus_tag="ACFM5C_000414"
     CDS             3467..4876
                     /gene="thrC"
                     /locus_tag="ACFM5C_000414"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFC6068179.1"
                     /translation="MKYISTRGETAHKPFSEVLLMGLAPDGGLMLPEHYPQIGRETLD
                     KWRGSAYPELAFEIMRLFVTDIPEDDLRDILNRTYTEAAFGTKEITPVRTLSDGIKIQ
                     ALSNGPTLAFKDMAMQFLGNAFEYVLNKEGKKLNILGATSGDTGSAAEYALRGKKGVN
                     VFMLSPDGKMSAFQRAQMYSLQDGNIHNIAVKGMFDDCQDIVKAVQNDAAFKEKYHIG
                     TVNSINWGRIVAQVVYYFAGYFKATQSNDEQVSFCVPSGNFGNVCAGHIAKQMGLPIR
                     RLIVATNENDVLDEFFKTGAYRPRNSAHTYVTSSPSMDISKASNFERFVFDLMDRDPQ
                     EINTLWAEVAAGKGFDLRFALEKVGGKYGFTSGKSTHPDRLATIRQVYEQDQELIDPH
                     TADGVKVAREVREEGETVVCLETALAAKFDATIREAVGDAAIPRPAALEGLETLPQRV
                     QTVPNSADAVKGIIEQTLA"
     gene            4923..5717
                     /locus_tag="ACFM5C_000415"
     CDS             4923..5717
                     /locus_tag="ACFM5C_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068180.1"
                     /translation="MTLPMQETHFSILLDELAAKQEAAIAPHLLADGTKVWIRKAGRH
                     NARWRYALLGMVARYLKLGVLKPVPSLGGEPAIATESKRLYELRAAGIAVPELLAVRK
                     NALMFGNLEGIPLDTQIRQEAEAGKADAWLAGLEAIARVHKKQQFLSQAFARNMMSDE
                     ENISFLDFEDDPSEVLTIAQCQARDWLCYIHSTALILKNGGLLEAAAEKWGGVLSEQP
                     AEIQRLIAATVKPILPIRRLEHPRWGRDALRLAASISLISLADIPP"
     gene            5905..6681
                     /locus_tag="ACFM5C_000416"
     CDS             5905..6681
                     /locus_tag="ACFM5C_000416"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6068181.1"
                     /translation="MAAFNTQKVLSVHHWTDAYFTFTCTRDESLRFENGQFVMVGLMV
                     DGKPLMRAYSVASANWEEHLEFFSIKVQDGPLTSRLQHLKVGDDVLISKKPTGTLVAG
                     DLNPGKHLYLLSTGTGIAPFLSITKDPEIYEQFEKIILVHGVRYKKDLAYYDRFTKEL
                     PEHEYLGDLVKEKLIYYPIVSREEFEHHGRLTDLMVSGKLFEDIGLPKINPQDDRAML
                     CGSPAMLKDTCKVLDDFGLTVSPKTGVRGDYLIERAFVDQ"
     gene            6757..6863
                     /locus_tag="ACFM5C_000417"
                     /pseudo
     CDS             6757..6863
                     /locus_tag="ACFM5C_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(7442..9913)
                     /locus_tag="ACFM5C_000418"
     CDS             complement(7442..9913)
                     /locus_tag="ACFM5C_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6068182.1"
                     /translation="MKKTCFHCGLDVPEHLHLTVRYENEDRETCCAGCQAVAQSIIDA
                     GLGSYYKQRTADAQKTELPPQEILDQIRLYDLPEVQSDFVETHGGTREAVLMLGGITC
                     AACVWLIEQQLLRTDGIVRIDLNYSTHRCRVVWDDGKIRLSDILLKIRQIGYTAAPYD
                     AQKIEAANQKERKQYIVRLAVAGLGMMQTMMFALPTYLYGGDIEPDFLQILHWGGFLM
                     VLPVVFYCAVPFYQGALRDLKNRRVGMDTPITVAIIMTFIAGVYSLATNAGQGMYFES
                     IAMLLFFLLGGRFMEHIARRKAGDAAERLVKLIPAFCHHMPDYPDTQETCEAAVVKLK
                     AGDIVLVKPGETIPVDGTVLEGSSAVNESMLTGESLPVAKMPSEKVTAGTLNTQSPLI
                     IRTDRTGGGTRLSHIVRLLDRALAQKPRTAELAEQYASSFIFGELLLAVPVFIGWTLY
                     ADAHTALWITVALLVITCPCALSLATPTALAASTGTLAREGILIGGKQAIETLAQTTD
                     IIFDKTGTLTQGKPAVRRISLLRGTDEAFVLAVAQALEQQSEHPLARAILNCRISDGS
                     VPDIAIKQRLNRIGEGVGAQLTVNGETQVWALGRASYVAEISGKEPQTEGGGSAVYLG
                     SQSGFQAVFYLTDPLKDSAAEAVRQLAGKNLTLHILSGDRETAVAETARALGVAHYRA
                     QAMPEDKLEYVKALQKEGKKVLMIGDGINDAPVLAQADVSAAAAGGTDIARDGADIVL
                     LNEDLRTVAHLLDQARRTRHIIRQNLIWAGAYNIIAVPLAVLGYVQPWIAALGMSFSS
                     LAVLGNALRLHKRGKMQSEKMPSEQ"
     gene            complement(9910..11088)
                     /gene="hflX"
                     /locus_tag="ACFM5C_000419"
     CDS             complement(9910..11088)
                     /gene="hflX"
                     /locus_tag="ACFM5C_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HFC6068183.1"
                     /translation="MTGRTGGNGSTQAQPERVMLVGVMLDKDGTGSSAARLNGFQTAL
                     AEAVELVKAAGGDSVRVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELT
                     PTQERNLEKELKCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHL
                     QSQRGGIGMKGPGETKLETDRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFA
                     LVGYTNVGKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDL
                     PHKLISAFSATLEETAQADVLLHVVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYN
                     KTDLLPSEEQNTGIWRDAAGKIAAVRISVAENTGIDALREAIAESCAAAPNTDETEMP
                     "
     gene            complement(11093..12373)
                     /locus_tag="ACFM5C_000420"
     CDS             complement(11093..12373)
                     /locus_tag="ACFM5C_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HFC6068184.1"
                     /translation="MKSLVIWLLLLGSAAGVFYHTQNQSLLVGELVYPSAPQIRDGGD
                     ALHYLNRIRAQIGLHELAHAPVLENSARRHARYLTLNPEDGHGEHHPDNPHYTAQKLT
                     ERTRLAGYLYNGVHENISTEEEAAESSDSDIRTQQRQVNGLMSAIYHRLSLLDRHTDE
                     AGAAFVRENGKTVLVFNQGNGRFERACARRMQQPEAGRKYYRNACHNGAAVYADEVMP
                     ATELLYTAYPVGSGVLPYFYGERPDPMPGYEMTGNPVSIDFSEAAGKITMKSFKLYQG
                     KNEIRPVKVLTAGNDPNGRLTAYQFALFPIKPLEYGTLYTAVFDYVRNGRRAQAKWQF
                     KTRKPDYPYFEVNGGETLAVRKGEKYFIHWRGRWCLEACTRYTYRQRPGSRLSIGRHE
                     AGGIVFSVDGMAGSRITLAPEGETERGVTLYLQD"
     gene            complement(12526..13251)
                     /locus_tag="ACFM5C_000421"
     CDS             complement(12526..13251)
                     /locus_tag="ACFM5C_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFC6068185.1"
                     /translation="METQNKPTVTDIDRPILVPPGGHKKVLLHSCCAPCSGEVMEAML
                     ASDIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGIPFIDKDDDYENDRKEWFAKAK
                     GMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSLGISRWKNMNQINDCGRRAA
                     APYDDVVYWDFNWRKGGGSARMIEISKRENFYQQEYCGCAYSLRDSNAHRKSQGRIPI
                     KLGVLYYGDESTQYEPAPIRVDK"
     gene            complement(13324..14001)
                     /gene="radC"
                     /locus_tag="ACFM5C_000422"
     CDS             complement(13324..14001)
                     /gene="radC"
                     /locus_tag="ACFM5C_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HFC6068186.1"
                     /translation="MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAV
                     DLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQEGIV
                     LSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
                     ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSF
                     RQLGLMP"
     gene            14028..14150
                     /locus_tag="ACFM5C_000423"
     CDS             14028..14150
                     /locus_tag="ACFM5C_000423"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068187.1"
                     /translation="MPSETNVPTRQISEMPSEPDFRFRRHLYFKTVLRRFFQLD"
     gene            complement(14124..15473)
                     /gene="gshA"
                     /locus_tag="ACFM5C_000424"
     CDS             complement(14124..15473)
                     /gene="gshA"
                     /locus_tag="ACFM5C_000424"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HFC6068188.1"
                     /translation="MKLPVMSPEHSAQLQAFEAKILSNHAKIEAWFRTQWSVHRPPFY
                     GSVDIRNAGYKISSIDMNLFPGGFNNLNPNFIPLAAVAAQDAVQRACETAKSVLIIPE
                     NHTRNTFYLQNVYALGEILCSAGYEVRLGSLNPEVTEPTEFETALGDKILLEPLLRTR
                     DRVHLADGFSPCVVLLNNDLSAGIPDILKGISQTVLPPLHGGWTTRRKTNHFGAYNQV
                     TAEFAKLIGIDEWQINPYFEKIGGLDFQGREGEDALAEAVERVLAKIQAKYDESGITD
                     KPFVIVKADAGTYGMGVMSVKSADEVRGLNRKNRNKMAKVKEGLEVSEVIVQEGIYTY
                     ETLNGAVCEPVVYMMDRFVIGGFFRVHEGRGADENLNAGGMVFVPLSNSIPTGNGDNS
                     QEAPEACKRVFEQWDALGMPRSEKDCDVDNVHNRLYVYGVMARLSLLAASIELEETA"
     gene            15733..17139
                     /gene="leuC"
                     /locus_tag="ACFM5C_000425"
                     /pseudo
     CDS             15733..17139
                     /gene="leuC"
                     /locus_tag="ACFM5C_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448951.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
     gene            17223..17477
                     /locus_tag="ACFM5C_000426"
     CDS             17223..17477
                     /locus_tag="ACFM5C_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068189.1"
                     /translation="MNKLFITALSALALSACAGTWEGAKQDTARNLDKTQAAAERAAE
                     QTGNAVEKGWDKTKEAVKKGGNAVGRGISHLGGKIENATE"
     gene            17539..18180
                     /gene="leuD"
                     /locus_tag="ACFM5C_000427"
     CDS             17539..18180
                     /gene="leuD"
                     /locus_tag="ACFM5C_000427"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFC6068190.1"
                     /translation="MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFD
                     EWRYLDHGEPGMDNSKRPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDY
                     GFRAVIAPSFADIFFNNCYKNGLLPIVLTEEQVDRLFKEVEANEGYRLSIDLAGQTLT
                     TPGGETFAFDITEHRKHCLLNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFNG"
     gene            18349..19620
                     /locus_tag="ACFM5C_000428"
     CDS             18349..19620
                     /locus_tag="ACFM5C_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6068191.1"
                     /translation="MQQIKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAAL
                     EVLKQNYPDEVPYGDITKIETGDIPDFDILLAGFPCQAFSFAGKRLGFEDTRGTLFFD
                     VARILKAKKPKGFILENVEGLVTHDRKDPTQKIGRTLTVILETLETLGYYVSWKVLNA
                     KDFGIPQNRKRIYLTGSLKSKPDLSFETTLSPKLKNILESGLPTESSPFIKKLLKKFP
                     PSELYGKSVKDKRGGKNNIHSWDIELKGTVTEEEKQLLNMLLKERRKKKWASEIGIDW
                     MDGMPLTKAQISTFYKHPNLQNILDSLTDKGYLVLEHPKQKIGGRRIKDESLPKGYNI
                     VSGKKSFEINKILDPNDVAPTLVAMDMEHLFVVDNGGLRTLTGKEGLRLFGYPDDYSF
                     DIPKKDKYDLLGNTVAVPVIKAVSERLLHTL"
     gene            19636..20367
                     /locus_tag="ACFM5C_000429"
     CDS             19636..20367
                     /locus_tag="ACFM5C_000429"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0090304 - nucleic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
                     /protein_id="HFC6068192.1"
                     /translation="MVKLTAQQIFDKLLNEEKILSVNGQIRFFLGDVDIIVKQKDVVG
                     NIIQEWLGGWLRKREIEFDVSTNTQMPPDFFLNKKDRSRELLEVKAFNRNASPGFDIA
                     DFKMYSDEIIHKPYMLDVDYLIFGYDMDDNGNVTIKDLWLKKVWQITRSMDGWAINLQ
                     VKKGVVHKIRPGVWYSINKKNMPMFECLEDFVSAIEETVYQNPATRHNASLWKKKFEE
                     AYKKHYNRSISIPRWHEIAHKYKKK"
     gene            20401..21471
                     /gene="leuB"
                     /locus_tag="ACFM5C_000430"
     CDS             20401..21471
                     /gene="leuB"
                     /locus_tag="ACFM5C_000430"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFC6068193.1"
                     /translation="MTKHIAILRGDGIGPEIVAETVRVLDKLIAQGLDAGYEYAPLGG
                     EAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFA
                     NLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNT
                     MKYSESEIRRIAHVAFQSAQKRSKKVCSVGKANVLETTELWREIFEEIGKEYPDVELS
                     HMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLY
                     EPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTSD
                     IYEEGTKLVSCSEMGDAVLAAL"
     gene            21634..22197
                     /locus_tag="ACFM5C_000431"
     CDS             21634..22197
                     /locus_tag="ACFM5C_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFC6068194.1"
                     /translation="MKKIIFAALAAAAISTASAATYKVDEYHANARFAIDHFNTSTNV
                     GGFYGLTGSVEFDQAKRDGKIDITIPIANLQSGSQHFTDHLKSADIFDAAQYPDIRFV
                     STKFNFNGKKLVSVDGNLTMHGKTAPVKLKAEKFNCYQSPMEKTEVCGGDFSTTIDRT
                     KWGMDYLVNVGMTKSVRIDIQIEAAKQ"
BASE COUNT         5411 a         5895 c         5789 g         5262 t
ORIGIN      
        1 ggcatttcca aagggcattt taagccgtat ttgagagaat gcggatggcg ttttcagtgt
       61 tttcagcgtg ataaaattca aatttctatt ttaaaacaat cagcaaagca ggatttattt
      121 cagttgtccg agacaacggg cggctgcacc gcctgcactc cccatacttt ttcaatgcac
      181 tcgagcagga gtgagacgtg gggattatcc tcgtattctt ccgcataaat gaaattgagc
      241 ggcatactgt ggcggcacga ttcgataata gccacgcccg cgccttcttt tgccgccgct
      301 tcggctttgt ttcccggcac cattgccaca cctataccgc ctgcaaccaa atcgataatg
      361 gtttgggggt agtcgcacaa gatctgtttt ttgggtgaga gccggttgct gcgccaaaac
      421 tggtgcaggt gcttcctact tccggacacg cccgacattt ctatccatac gcattcttgc
      481 aggctctgcg gaagggagcg ggtcagatgg ggatattggc tttgcgggca aatcagcgcg
      541 taggtcaggt tttgcaggaa tacgctgcgg atgccgcgtt gggcggcgtt gccgagtata
      601 aagccgccgt gcagggtttt gtgttggatg cgcgagagga tttcgccgct cattccgtat
      661 tggatgtgca ggcgcgtttt gggggctgtt tgaccgatat tgtccgtcag cgcgacgagt
      721 tttgccgaat cgatggggtg gataatgccc aaactggtct cttccgaata atcgcctgcc
      781 agcgttttgg caaaatgctc cagcttgtgt ttgtattgca gcagggattc cgcttcgggc
      841 aacagtattt cgcccgcccg cgtcaatacc atgcctttcc ccgtgcgcct gaacagcggc
      901 gtgccgacat attcttcaag ggctttaatt tgggcggaaa cggcaggctg ggaaaggaaa
      961 agtcgtttgg cggcttgggt aaggttgccc tcgtgcgcga cggcgacaaa tgattttaat
     1021 tgtacggcat ccatatatcc ctccttgtgc ggatgttttc tatatttgtg caatcgaaat
     1081 cttttaggtg gattgttgct gaaaattaac tttttaatca agtggtttgt aaattgtatc
     1141 agtttttcgg atgatgatta ttaaaaaaaa agattggttt tattgcctgt ttgggcttta
     1201 aatggggtga cggcttcctt tcggtggccc gaacgcagcc catatcaaaa agaaaagtca
     1261 tgcgcccctt ttgcgaggcg cgatatataa ggaggaagat tatggacaaa cataatggga
     1321 cttatcggga tttgcaccgt ccggcttcgg aatttgcgac gcgggacgaa tatttggaac
     1381 atgaattgca gattatgcaa ccaaaacgct ggcggcccaa cctgcccttt cgcgattacc
     1441 gcttcgagtg ggaggatttg attcctgcga tggcgggaac gattggaaaa gtggtgatgg
     1501 tgggggcggt ggcggcggcg tttgccgcac ctttggggct gcctgacagc tttgtactgg
     1561 aaaatgtgcg ctatgagctt ttaatcgccg ccgcgtttat cttattggta tcgggctttt
     1621 ttctgcccgg cgccaacctg cccggtacgc acgggccgct gattccgatg attcccatcg
     1681 ttgtgtcggc aggcgggcat cctttggcgt tcggcatttc gattgcggtt ttaggtctgc
     1741 tgatggcttt atttcgcggc ggcagtatta tggcgaagct gacaagcaac ggcgtatgcg
     1801 gcggattatt actctatttg ggctttatcg gcacgacggg gcaggtaaaa aaattgtttt
     1861 cgtgggcagg cggttttaat atgccctaca tcgcttttac cgtcattatt gtaacgattg
     1921 tgatgtacgc tttgttggag cattggaaaa aacgctggtt agccgtgcct ttgggatgct
     1981 tgattgccgg tgtggtggca tttgcattgg gtgcgccgtt tgagtttcac accgcccccg
     2041 gcctgcctcc aatgagtcct gcttattggt ggggtgaaaa cagcggctgg catctggggt
     2101 tgccgacggc agaaagtttt ttggttgtct ttccatttgc ggtattggct gttgcaatgt
     2161 ggtcgcccga ttttttagga catcaagtgt tccaaaaaat cagctatccg gaaaaaaccg
     2221 ataaggtatt gatgaatata gacgacacca tgacaagttg ttctgtccgt caagcagtgg
     2281 gttctatttt agggggtgca aattttacct cttcttgggg aacttatatc gtaccggcat
     2341 cgattgccaa acgccccatt ccgggcggtg cggttttaac ggcggtttta tgtattatcg
     2401 ccgggttatg gggctatccg atggacttgg cgatttggca gccggtattg agcgtagcct
     2461 tggtcgtagg cgtatactta ccgcttttgg aagcgggcat ggaaatgacg cgcaaaggca
     2521 aaaccaccca atccgccgcc atcgtggtgt tctcttccgc cttggtcaat ccggttttcg
     2581 gctgggcgtt gacgatgctg ttggataatt tgggcttaat cggctgcaaa gagcgcagtg
     2641 cgcaattagg tttcgccgga cgcgtgttga tacccgcagt aggtttcttg atcttgtgtg
     2701 tggcgatggg tgcggtcggg atgctgcccg gtatcccgcc gtttttggaa cacttcaaat
     2761 ctttgggcta ggctgaaatc ggaaatgccg tctgaaccgc tttcagacgg catttttgca
     2821 aacaggcaaa atgacggcgg cgggattttt tattttcccg attgaagtat aatgttgccg
     2881 ggcttcaacc ggatattcaa aacggtttgt tccaacactc ggaacggcgc ataaaacgcc
     2941 gcccttcgcg ttatcccgaa cggggcggct aatcagattc tatcgccata aaaggcgggg
     3001 tttcaaccga aaaggaattg agatgaataa aaccttgtct attttgccgg tggcaatctt
     3061 actcggcggc tgcgccgccg gaggcggtaa cacattcggc agcttagacg gtggcacagg
     3121 catgggcggc agcatcgtca aaatggcggt tgggagccaa tgccgtgcgg aattggacaa
     3181 acgcagcgaa tggcgtttga ccgcgctggc gatgagtgcc gaaaaacagg cggagtggga
     3241 aaacaagatt tgcgcttgcg tcgcccaaga agcacccgaa cggatgaccg gcaacgatgt
     3301 gatgcagatg ctggctccgt ccacgcgcaa tcaggcactt gccgccctga ccgccaaaac
     3361 ggtttccgcc tgcttcaaac acctgtaccg ctaaccttct tcagacggca tgaggcagat
     3421 gccgtctgaa gccgttttcc tgcaatttcg acagacgaga aaaatcatga aatacatcag
     3481 cacgcgcggc gaaaccgcac acaaaccgtt cagcgaagtt ttattgatgg ggcttgcccc
     3541 cgacggcggt ctgatgctgc cggaacatta tccgcaaatc gggcgcgaaa ccttggacaa
     3601 atggcgcggt tcggcttatc ccgaattggc gtttgaaatt atgcgcctgt tcgttacgga
     3661 tattccggag gacgatttgc gcgatattct gaaccgtact tacacggaag cggcgttcgg
     3721 tactaaggaa atcacccccg tccgcacgct ttcagacggc atcaaaatcc aagccttgtc
     3781 caacggcccg acgctggcgt tcaaagatat ggcgatgcag tttttgggca atgcgtttga
     3841 atatgtttta aacaaagaag gcaaaaaact caatatcttg ggcgcaacca gcggcgatac
     3901 gggttcggct gcggaatatg ccttgcgcgg caaaaaaggc gtgaacgtat ttatgttgtc
     3961 gcccgacggt aagatgagcg cgttccaacg cgcgcagatg tacagcctgc aagacgggaa
     4021 tatccacaat atcgccgtga agggtatgtt tgacgactgt caggatattg tgaaggcggt
     4081 gcagaacgat gccgcgttca aggaaaaata ccacatcggt acggtcaatt cgatcaactg
     4141 gggacgcatc gtcgcacaag tggtttatta ctttgcgggc tatttcaaag cgacacaaag
     4201 caatgacgag caagtcagct tctgcgtgcc gagcggcaac ttcggcaacg tttgcgcggg
     4261 acacatcgcc aaacagatgg gtttgcctat ccgccgcctg attgtcgcga ccaatgaaaa
     4321 cgatgtgttg gacgagtttt tcaaaaccgg tgcataccgc ccgcgcaaca gcgcgcatac
     4381 ttatgttacc tccagcccgt cgatggacat ttccaaagcg tccaacttcg agcgtttcgt
     4441 gttcgacctg atggatcgcg atcctcagga aatcaatacg ctgtgggcgg aagtagcggc
     4501 gggcaaaggc tttgacctgc ggtttgcttt agaaaaagtc ggtggcaaat acggttttac
     4561 ctccggcaaa tccacccacc ccgaccgcct cgccaccatc agacaggttt atgagcaaga
     4621 ccaagaactc atcgacccgc acactgccga cggcgtaaaa gtcgcccgcg aagtgcgcga
     4681 agaaggggaa acggttgtgt gtttggaaac cgcgttggca gcgaaattcg atgcgaccat
     4741 acgcgaagcc gtcggcgatg ccgccattcc gcgccccgcc gcgctggaag gtttggaaac
     4801 attgccgcag cgcgtgcaaa ccgtgccgaa cagtgcggat gcggtaaaag gcatcatcga
     4861 acaaaccctt gcctgatgtt ccgtatgggc ggcattccgt ccgaacttaa gattgaaaga
     4921 aaatgacctt acctatgcag gaaacccatt tttccatact gctggacgaa ctggcggcaa
     4981 aacaggaggc agccatcgcc ccccacctgc ttgccgacgg aaccaaggta tggatacgca
     5041 aagcaggcag gcacaatgcg cgatggcgtt acgcgctgct cggtatggtt gcccgatatt
     5101 tgaaactggg ggtgttgaag ccggttccca gcctcggcgg cgagcctgcc attgcaaccg
     5161 aatcaaaacg cctgtacgaa ttgcgcgcgg cggggatagc cgttcccgaa ttgctcgccg
     5221 tcaggaaaaa tgcccttatg ttcggaaatt tggaaggtat cccgctcgat acgcaaatcc
     5281 gccaagaagc cgaagccgga aaggcggacg cttggcttgc cggtttggaa gccattgcac
     5341 gcgtgcataa aaaacagcag ttcctcagtc aggcgtttgc gcggaatatg atgtcggacg
     5401 aggaaaacat cagctttttg gattttgaag acgacccttc cgaagtcctg accatagcgc
     5461 aatgccaagc ccgcgattgg ctctgctaca tccattcgac cgcgctgata ttgaaaaacg
     5521 gcggactgct ggaagcggct gcggaaaaat ggggcggcgt actgtctgag cagcctgccg
     5581 aaatacaaag gctgattgcc gccaccgtca aaccgatcct cccgatacgc aggctggaac
     5641 acccccgctg gggacgggac gcgctcaggc tggcagcctc gatttccctg atttcccttg
     5701 ccgatatacc gccataagcc gccgcccgcc ccgcgatgcc gtctgaagcc cttcagacgg
     5761 catataacca acgcgcatca agcattgtcg caaccatccg tttcgtttag aattttggct
     5821 ttatcccgaa tcgggcagac atttccactc tgccgcacgt cccgaacaag cactatccat
     5881 ttcttttact gacaggaaac ccaaatggca gcattcaata cccaaaaagt attgtccgta
     5941 caccactgga cagacgcata ttttaccttt acctgcaccc gcgacgaatc gttgcgcttt
     6001 gaaaacggac agttcgttat ggtcggattg atggtggacg gcaagccgct gatgcgtgca
     6061 tacagcgtcg cctccgccaa ctgggaagaa cacctcgaat ttttcagcat taaagtccaa
     6121 gacggcccgc tgaccagccg cctgcaacac ctcaaagtcg gcgacgacgt gttaatcagc
     6181 aaaaaaccga ccggaaccct ggttgccggc gacctgaatc cgggcaaaca cctttacttg
     6241 ttgagcaccg gtaccggcat cgctcctttc ttgagcatca ccaaagaccc cgaaatttac
     6301 gagcaatttg aaaaaatcat cctcgtacac ggcgtgcgct acaaaaaaga tttggcgtac
     6361 tacgaccgct ttaccaaaga attgcccgaa cacgaatacc tcggtgactt ggttaaagaa
     6421 aaactgattt actacccgat tgtttcgcgc gaagaattcg aacaccacgg tcgcctaacc
     6481 gacctgatgg tgagcggcaa actgtttgaa gacatcggcc tgcccaaaat caacccgcaa
     6541 gacgaccgcg ccatgctgtg cggcagcccc gcgatgctga aagatacctg caaagttttg
     6601 gacgatttcg gactgaccgt ctctccgaaa acaggcgtac gcggcgatta cctgattgag
     6661 cgtgcgtttg tagatcaata agctgtttga aaatcccgtc tgaacggcac cagcaatcaa
     6721 aaaccccgaa tcctgccaat caggattcgg ggtttttata gtgaattaaa tttaaatcag
     6781 gacaaggcgg cgaaccgcag acagtacaaa tagtacggca aggcgagcca acactgtacc
     6841 ggtttaaatt taattcacta tatagtgggt aaaaattaga aatgcacatt tccgtcattc
     6901 acgcgcaggc gggaatccag acctatccgt taattagcat ttgaaaataa aagaaaaacc
     6961 aagcatatgg attcccccct acgcgagact gacgacggtg ttctgcagta gccaaagcag
     7021 aaaaccatcc ttattgtcat ttcatcatga tataacaata aggatgttaa aaattagtta
     7081 tcattatatt catgatatat aagaaaaatt gtcccaataa gaaatgttat gcagaaaata
     7141 aaatgaaaag gatggttttc attgaaaatg gttgttctgc caccgtcata cacagaaccg
     7201 gtatttggaa aaaaaataat ccatattgac atcattattc catttatcgc ataaatccac
     7261 tttttaattt ttttcctcat taatacaatc tcttatttaa taaaatcaaa tacctagcaa
     7321 ttcgatctca aattttgaac gccaacgtgt ttgagcggta acaatacata ctttaagttt
     7381 gcaattcttc atcgtcttat ttttgttttc atcaactata cgtctaaagc aacgccgtcc
     7441 gtcattgttc ggacggcatt ttttcagact gcattttccc ccgtttgtga aggcgcaggg
     7501 cgttgcccaa aaccgccagc gaactgaagc tcatacccag tgcggctatc cacggttgga
     7561 catagcccaa aacggcaagc ggtacggcaa tgatattgta cgcgcccgcc catatcaggt
     7621 tttgccggat aatatggcgg gtgcgccgcg cctgatcgag caggtgggcg acggtacgca
     7681 aatcttcgtt caataacaca atgtccgcgc cgtccctcgc aatatccgtc ccgcccgctg
     7741 cggcggcgga tacgtctgcc tgcgccaaaa cgggcgcgtc gttgatgccg tcgcctatca
     7801 tcagcacttt tttcccttct ttttgcaagg ctttgacgta ttccagtttg tcctcgggca
     7861 tggcttgggc gcggtagtgc gcgacaccca gggcgcgtgc ggtttcggca acggcggttt
     7921 cgcggtcgcc gctgaggatg tgcagggtca ggtttttgcc tgccaactgc cgcaccgcct
     7981 ccgccgcgct gtctttcaag gggtcggtca ggtagaacac ggcttggaaa ccgctttgac
     8041 tgccgaggta aaccgcgctg ccgccgcctt ctgtttgcgg ttctttacct gaaatttcgg
     8101 cgacatagga tgccctgccc aatgcccaaa cctgtgtttc gccgttgacg gtcagttgcg
     8161 cgcccacgcc ttcgccgatg cggttgaggc gttgtttaat agcgatgtcg gggacgctgc
     8221 cgtctgaaat gcggcagttg aggatggcgc gggcaagggg atgttcggac tgttgttcta
     8281 aagcctgcgc caccgcgaga acaaaggctt cgtctgtgcc tctcaacaat gagatacggc
     8341 ggacggcggg tttgccttgg gtcagcgtgc cggttttgtc gaagatgatg tcggtggttt
     8401 gggcgagggt ttcgattgcc tgctttccgc cgattaaaat accttcgcgc gccagcgtac
     8461 cggtagaagc tgccagcgcg gtcggcgtgg caagcgataa ggcgcagggg caggtaatga
     8521 ccagcagggc gacggtaatc cacaatgcgg tgtgcgcgtc ggcgtacagc gtccagccga
     8581 tgaagacggg gacggcaagc aggagttcgc cgaatatgaa agacgaggcg tattgttccg
     8641 ccaactcggc agtgcgcggt ttttgcgcta aggcgcggtc gagcaggcgg acgatgtgcg
     8701 acagtcgcgt gccaccgccg gtgcggtcgg tgcgtataat cagggggctt tgcgtgttga
     8761 gtgtgccggc ggttactttt tcagacggca ttttggcgac gggcaggctc tcgccggtca
     8821 gcatagattc gttgacggca ctgcttcctt ccagcaccgt gccgtcaacg gggatggttt
     8881 cgcccggttt gaccagcacg atatcgcccg ctttcaattt gacgacagct gcctcgcagg
     8941 tttcctgcgt atcggggtaa tcgggcatat gatggcaaaa cgcaggaatc agcttcacca
     9001 gcctctcggc ggcatcgcct gccttacggc gggcaatgtg ttccataaag cgtccgccca
     9061 gcaggaaaaa cagcagcatc gcgatggatt cgaaatacat cccctgcccc gcatttgtcg
     9121 caaggctgta aacgccggcg ataaaggtca tgatgatggc gacggtaatc ggcgtatcca
     9181 tgccgacgcg gcggtttttc aagtcgcgca gcgcgccttg ataaaacggg acggcgcaat
     9241 agaatacgac gggcagcacc attaaaaagc cgccccaatg gaggatttgc aggaaatcgg
     9301 gttcgatgtc gccgccgtaa aggtaggtcg gcagcgcgaa catcatcgtc tgcatcatcc
     9361 ccagcccggc aacggcgagg cggacgatgt attgtttgcg ttctttttgg ttggcggctt
     9421 cgattttttg cgcgtcatag ggtgcggcgg tgtagcctat ctgcctgatt ttcaacagaa
     9481 tgtcggaaag gcggattttg ccgtcgtccc agacgacgcg gcagcggtgc gtgctgtaat
     9541 tgaggtcgat gcggacgatg ccgtctgtac gcaaaagctg ctgttcgatc agccagacgc
     9601 aggcggcgca ggtgatgccg ccgagcatta aaaccgcctc gcgcgtgccg ccgtgggttt
     9661 ccacaaagtc ggactggact tcgggcaggt cgtacaggcg gatttggtcg aggatttctt
     9721 ggggcggcag ctcggttttt tgcgcgtcgg cggtgcgttg tttgtaataa ctgcccaagc
     9781 ccgcgtcaat aatgctttgt gcgaccgcct gacagccggc gcagcaggtt tcgcggtctt
     9841 cgttttcgta acggacagtc aggtggaggt gttcgggaac atccagaccg cagtggaaac
     9901 aggttttttt catggcattt cggtttcgtc tgtgtttggt gcggcggcac aagactcggc
     9961 aatggcttcg cgcagtgcgt ctataccggt attttcagca acggaaatgc ggacggcggc
    10021 aatttttccc gcagcgtcgc gccatatgcc cgtgttttgt tcttcagacg gcagcaggtc
    10081 ggttttgttg tacaccttga tgcacggaat atcgccggca tggatttctt gcagtacgtt
    10141 ttccacgtct tcaatctgct gtccgctgtt cggagcggcg gcatcgacga cgtgcagcag
    10201 cacatcggct tgcgcggttt cttccagcgt ggcggaaaag gcggaaatca gtttgtgcgg
    10261 cagatcgctg acgaatccga cggtatcggt caggataatg ctgcattcgg gactgatgta
    10321 cagccgccgc gccgtcgtgt cgagtgtggc gaaaagctgg tctttcgcat atatgcccga
    10381 cttggtcagc cggttgaaca ggctggattt gccgacattg gtatagccga ccagcgcaaa
    10441 cgttttgatt gtgcccgatt cgcgggactt gcggcgcagg gcgcgctgtt ttttgaggtt
    10501 ggcaagctgt tttttcaagg cattgatccg atgggcgatc aatcggcggt cggtttccag
    10561 tttggtttcg ccggggcctt tcatgccgat accgccgcgc tggctctgca gatggccgta
    10621 accgcgtatc aagcgtcccg ccaaatggct caattgcgcc aactcgactt gcagcctgcc
    10681 ttcctgcgtg cgggcgcggc gagcgaaaat cgccagaatc agccctaccc tgtccaatac
    10741 gcggcatttc agttcttttt caaggttgcg ttcctgcgtg ggcgtgagtt cgtggttgaa
    10801 tacgaccaaa tcgatgccgt ctgcggcaac tgcttctgac agctccgccg ccttgcccgt
    10861 gccgacaaac agcgcggtgt gcggacggtc gcgtttggca gtctccacgc gcacggaatc
    10921 gccgcccgcc gctttgacca gctcgacagc ttccgccaat gccgtctgaa aaccgttcag
    10981 acgggcggca ctactgcccg taccatcttt gtccaacatt acgcccacca gcatgacgcg
    11041 ttcgggttgc gcttgggtac tgccgttgcc gcctgttctg cctgtcatgt attcaatcct
    11101 gtaaataaag ggttacgcct cgttccgttt ctccttccgg tgcaagcgtg atgcggctgc
    11161 ccgccattcc gtcaacgctg aagacgatgc cgcccgcctc gtgccttcct atggacaggc
    11221 ggctgccggg tcgctgccgg taggtataac gggtacacgc ttccaaacac cagcgtccgc
    11281 gccagtggat gaaatatttt tcgccttttc taaccgcaag tgtctcgccg ccgtttacct
    11341 caaaataagg gtaatcgggt tttcgggttt taaactgcca tttcgcctgc gcgcgccgtc
    11401 cgttgcggac atagtcgaat accgccgtat aaagcgtacc gtactccaaa ggcttgatcg
    11461 ggaaaagcgc gaattggtac gccgtcagcc tgccgttggg gtcgttgccg gcggttaaaa
    11521 ctttgacggg acggatttcg tttttaccct gatacagctt gaaacttttc atcgtaattt
    11581 tgcctgccgc ctcagaaaaa tcaatgctga caggattgcc cgtcatttca tatcccggca
    11641 tggggtcggg acgctccccg taaaaataag gcagcacgcc gctgccgact ggataggcgg
    11701 tataaagcaa ttccgttgcg ggcatgactt cgtcggcata aacggctgca ccgttatggc
    11761 aggcattacg gtaatatttc cgtcctgctt ccggctgctg cattctccgg gcacaggcgc
    11821 gctcaaacct gccgttacct tggttgaata cgagaacggt tttaccgttt tcgcgcacaa
    11881 atgccgctcc tgcctcatcc gtatggcggt caagcaggga aaggcggtgg tagattgcgc
    11941 tcatcaatcc gttaacctgg cgttgctgcg tgcggatatc gctgtcggac gattcggcgg
    12001 cttcctcttc cgtgctgatg ttttcatgta cgccattgta aagataaccg gcaaggcgtg
    12061 tgcgttcggt cagcttttgt gcggtgtagt gcggattgtc gggatggtgt tcgccgtgtc
    12121 cgtcttcggg attaagcgtg agataacgtg cgtgcctgcg ggcggagttt tccaaaaccg
    12181 gcgcgtgtgc cagctcgtgc aaaccgattt gtgcgcggat gcggttgagg tagtgcagcg
    12241 cgtcgccgcc gtccctgatt tgcggtgcag acggatagac aagttctccc acaagcaggg
    12301 attggttttg ggtatggtag aaaacgcctg ccgccgaacc caacagaagc agccagataa
    12361 caagggattt catgatgtcg ccctctcgcc ccggcaacgg gatatttcat gaaaacggca
    12421 aacttgaaaa tcacgtttcc gcttgccgat tgccaaaccg gcaaaccttt ccccgtgccg
    12481 atgccgaacc cgatgccgtc tgaaccttca gacggcatca ggtgtttatt tgtccacccg
    12541 gatgggtgca ggttcgtatt gtgtcgattc gtcgccgtaa tacagcacgc cgagtttgat
    12601 ggggatgcgt ccctgcgatt tgcggtgggc attggaatcg cgcaaggaat aggcgcagcc
    12661 gcaatattcc tgctggtaga agttttcacg tttgctgatt tcaatcatac gcgcgctgcc
    12721 gccgcctttg cgccagttga aatcccaata caccacatca tcgtaaggcg cggcggcgcg
    12781 gcggccgcag tcgttaatct ggttcatgtt tttccaacgg gaaatgccca gcgagctggt
    12841 gaagacggga aacccgtgtt catgcgcata ttgcgccgcc ttttcgaaac gcatatcgaa
    12901 acacatggtg cagcggatgc cgcgctcagg ttcgaattcc atacctttgg ctttggcaaa
    12961 ccattctttg cggtcgtttt cgtaatcgtc gtctttgtcg atgaagggga tgccgaactt
    13021 ttccgcaaag cgtacgtttt cctcttttcg gagcatatat tctttgtgcg gatggatatt
    13081 gggattgtaa aaataaatgg tgtaatcaat gtcgctggcc agcatggctt ccatcacttc
    13141 gccgctgcac ggggcgcagc aggaatgcag caagactttt ttatgtccgc cgggcgggac
    13201 gagtatgggg cggtcaatgt cggtaacggt aggtttgttt tgtgtttcca ttaacttaac
    13261 aatatctgtc gaatacggtt gaagcggcta ttttatcaga gccgccgcat gtaaaacagg
    13321 gtgtcagggc atcagcccga gctgtctgaa cgaacggacg gtttgcgccg ttacgataaa
    13381 atggtcgagc agcgacacat cgaccagcga cattgcctgt gccagccgcc ttgtgaacat
    13441 gatgtcttcc tgcgaaggtt cgggcgagcc gcccggatgg ttgtgcgcga taatcaggct
    13501 gtcggcatat tcgtccaatg ccagtttgac gatttctcgg atgtaaatcg tgttttccgc
    13561 aaccgtaccg cgcgacagct ctctgaccgc aatcagttgg ttttggcggt tcagcagcag
    13621 tgcgacgctg acttcgactt tttcctgtcc caaatgaaag cgcaggtaat cggcaaccgt
    13681 atcggggtcg gacaggacga tgccctcctg caattcttcc gccaatatcc gccgcccgat
    13741 ttccctgacc acggcgaact gtgtgaaact tgccgtcccc atccctttgt atgccgacag
    13801 tttgccgacc tccgcgctca tcagcctccc caaactgccg aactcctgca gcaaataacg
    13861 cgccaaatcg accgcactca ttccgcgcgt gccgacgcgc agcaggattg ccaaaagttc
    13921 ggcatcactc aaagccgccg ccccgcgttc caacagcttt tccctgggcc tttcgccttc
    13981 cggccattgc ttgatgctca tgttttccct tttttaaata gtctgagatg ccgtctgaaa
    14041 caaatgttcc cacacgccaa atatccgaaa tgccgtctga accggatttc cgcttcagac
    14101 ggcatctgta tttcaaaaca gtcttacgcc gtttcttcca actcgattga agccgccaga
    14161 agcgacaggc gtgccatcac gccgtacaca tagaggcggt tgtggacatt atcgacatcg
    14221 cagtcttttt cagaacgcgg catacccagc gcatcccatt gctcaaatac gcgcttgcag
    14281 gcttcgggtg cttcttggga attatcgcca ttgccggtag gaatgctatt ggacagcggc
    14341 acaaacacca taccgccggc gttgaggttt tcgtccgcac cgcgcccttc gtgtacgcgg
    14401 aaaaagccgc cgatgacgaa gcggtccatc atatacacga cgggttcgca caccgcgccg
    14461 tttaaggttt cataagtata aatcccttct tggacaatca cttcgctgac ttccaagcct
    14521 tctttgactt tcgccatttt attgcggttt ttacggttca atccgcgcac ttcgtcggcg
    14581 gatttgacgc tcatcacgcc catgccgtaa gtgccggcat cggctttgac gatgacgaaa
    14641 ggtttgtcgg taatgcccga ttcgtcgtat ttggcttgaa ttttcgccag cacacgttct
    14701 accgcttccg ccaacgcgtc ttcgccttca cgcccttgga agtccaaacc gccgattttt
    14761 tcaaaataag ggttaatttg ccattcgtcg atgccgatta acttggcaaa ttcggcggta
    14821 acttggttgt acgcgccgaa atgatttgtt ttgcggcgcg tcgtccaacc gccgtgcaac
    14881 ggcggcaaaa cggtttggct gatgcctttg aggatgtcgg gaatgccggc agacaaatcg
    14941 ttgttcaaca aaaccacgca aggcgaaaag ccgtctgcaa gatggacgcg gtcgcgggta
    15001 cgcaataaag gttccaacag gattttgtcg cccaatgcag tttcaaattc ggtcggttcg
    15061 gttacttccg gattcaggct gcccaagcgc acttcatacc ctgccgaaca caaaatctcg
    15121 ccgagggcgt aaacgttttg caggtaaaac gtattgcgcg tgtggttttc gggaataatc
    15181 aatacggatt tcgccgtttc acaggcgcgt tgcaccgcat cttgcgcggc aaccgccgcc
    15241 agcgggataa agttgggatt cagattattg aagccgccgg ggaacaaatt catatcgata
    15301 gacgaaattt tgtaaccggc attgcgtata tcgaccgaac cgtaaaacgg cgggcggtgt
    15361 acgctccact gcgtgcggaa ccacgcctcg attttggcgt gattggacag gatttttgcc
    15421 tcaaacgcct gaagttgcgc cgaatgttcg ggcgacatca ccggtaattt catctttcgt
    15481 ctgcctctgt gtgttttttg acaagatgca gatgataatg cctttgaaag aatgacgaca
    15541 agtattcttt cgtatcgaat catgctttag atataactgt ttactgaaat ggacaatacg
    15601 tctaattttt tcgttaaaat tgtttgcaaa ataacaccgg ctcaaaaatt agacaaaatt
    15661 tgttgcgcgg tataaagaat acgtctaaaa tccgcccaat ccgcattacc atttatccaa
    15721 aagaacaaca tcatgacagc acaaaccctc tacgacaaac tttggaacag ccacgtcgtc
    15781 cgcgaagaag aagacggcac cgtcctgctc tacatcgacc gccatttggt gcacgaagtt
    15841 accagccctc aggcatttga aggcttgaaa atggcggggc gcaagctgtg gcgcatcgac
    15901 agcgtcgtct ccaccgccga ccacaacacc ccgaccggcg attgggacaa aggcatccaa
    15961 gacccgattt ccaagctgca agtcgatact ttggacaaaa acattaaaga gtttggcgca
    16021 ctcgcctatt ttccgtttat ggacaaaggt cagggcatcg tacacgttat gggccccgaa
    16081 caaggcgcga ccctgcccgg tatgaccgtc gtctgcggcg actcgcacac ttccacccac
    16141 ggcgcattcg gcgcactggc gcacggcatc ggcacttccg aagtcgagca cacgatggcg
    16201 acccagtgca ttaccgcgaa aaaatccaaa tccatgctga ttgccgttga cggcaaatta
    16261 aaagcgggcg ttaccgccaa agacgtggca ctttacatca tcgggcaaat cggcacggcg
    16321 ggcggtacag gctacgccgt cgagtttggc ggcgaagcca tccgcagcct ttctatggaa
    16381 ggccgcatga ctttatgcaa tatggcgatc gaagccggtg cgcgctcagg catggttgcc
    16441 gtcgaccaaa ccaccatcga ctatgtaaaa gataaaccct tcgcacccga aggcgaagcg
    16501 tgggacaaag ccgtcgagta ctggcgcacg ctggtgtctg acgaaggtgc ggtattcgac
    16561 aaagaatacc gtttcaacgc cgaagacatc gaaccgcaag tcacttgggg tacctcgcct
    16621 gaaatggttt tagacatcag cagcaaagtg ccgaatcctg ccgaagaaac cgatccggtc
    16681 aaacgcagcg gtatggaacg cgcccttgaa tacatgggct tggaagccgg tacgccatta
    16741 aacgaaatcc ccgtcgatat cgtattcatc ggctcttgca ccaacagccg catcgaagac
    16801 ttgcgcgaag ccgccgccat cgccaaagac cgcaaaaaag ccgccaacgt acagcgcgtg
    16861 ttaatcgtcc ccggctccgg tttggttaaa gaacaagccg aaaaagaagg cttggacaaa
    16921 attttcatcg aagccggttt tgaatggcgc gaaccgggct gttcaatgtg tctcgccatg
    16981 aacgccgacc gcctcgcacc ggggcaacgc tgcgcctcca cctccaaccg caattttgaa
    17041 ggccgtcaag gcaacggcgg acgtacccac ctcgtcagcc ctgccatggc agccgcagcc
    17101 gcagtgaccg gtcgctttac cgacatccgc atgatggcgg tctttaagaa tttgacgcgg
    17161 ccgtctgaaa tatgtcccgt aaggcagaaa cacctttaat attcaaacca aggagtttaa
    17221 ccatgaacaa acttttcatt accgccctgt ccgccctcgc cttgtccgcc tgcgccggca
    17281 cttgggaggg cgcgaaacaa gacaccgccc gcaaccttga caaaacacag gccgccgccg
    17341 aacgcgccgc cgaacaaaca ggcaacgccg tcgaaaaagg ctgggacaaa accaaagaag
    17401 ccgtcaaaaa aggcggcaat gccgtcggac gcggcatttc ccatctcggc ggaaaaatcg
    17461 aaaacgccac cgaataaccg attcgcgatg ccgtctgaaa ccgcttcaga cggcatcgtc
    17521 agcacaagac gcaaacccat gaaagccttt accaaaatca ccgccatcgt cgccccgctc
    17581 gaccgcagca acgtcgatac cgatgccatc atccccaaac aattcctaaa atccatcaaa
    17641 cgcagcggct tcggtcccaa tgcctttgac gaatggcgtt acctcgacca cggcgaacca
    17701 ggcatggaca acagcaaacg cccgttgaac cctgatttct cgctgaacca gccgcgttac
    17761 caaggcgcgc aaatcctgtt gacgcgtaaa aacttcggtt gcggctcttc acgcgaacac
    17821 gccccttggg cattggacga ctacggcttc cgcgccgtca tcgcccccag cttcgccgac
    17881 atcttcttta acaactgcta caaaaacggc cttttgccta tcgtgttgac cgaagaacag
    17941 gttgaccggc ttttcaaaga agttgaagcc aacgaaggct accggctctc catcgacctt
    18001 gccgggcaaa ccctgaccac ccccggcggc gaaacattcg cattcgacat taccgaacac
    18061 cgcaaacact gcctcttaaa cggcttggac gaaatcggac tgaccctgca acacgccgat
    18121 gaaattcacg cctttgaaga aaaacgccgc caaagccagc cttggctgtt taacggttaa
    18181 acctatgccg tctgaagacc gttcagacgg cattcctgat aacatataat tgctgcaact
    18241 aatgtaaaca gaggggctat aaattgcttt catctttcaa gcgggcttag caacgctcta
    18301 aattaatgca atacagctct atttcaaata aatttttaga tttttaatat gcaacagatt
    18361 aaatttattg acttattttc cgggatgagc ggtatcagga aaggatttga acaagcctgt
    18421 cggaaacagt cggttgcttg cgaatgtgtt tttacctcag aaatcaaacc ggcagctttg
    18481 gaagtattga agcaaaacta ccctgatgaa gtgccgtatg gagatataac gaaaattgaa
    18541 acgggagata ttcccgattt tgacatcttg ttggcaggct tcccttgcca ggctttttct
    18601 ttcgccggaa aaagattggg ctttgaagat acgcggggaa cgcttttctt tgatgtggca
    18661 aggattttaa aggcaaaaaa accaaaaggt tttattttgg aaaatgtgga aggattggtg
    18721 acgcacgata gaaaagatcc gacacaaaaa ataggacgca ccctgaccgt tattttggaa
    18781 accttggaaa cattgggcta ctatgtttct tggaaagttt taaatgcaaa agatttcggc
    18841 attccccaaa acaggaagcg catttatctg acaggcagtt tgaaatccaa acccgactta
    18901 tcttttgaaa caaccctaag tccgaaatta aaaaatattt tggaatcggg actgcctacc
    18961 gaaagcagtc ctttcatcaa aaaattgcta aagaaatttc ccccgtccga actgtacgga
    19021 aaatcagtaa aggacaaacg gggagggaaa aacaatatcc acagttggga tattgaatta
    19081 aaaggcacag taaccgaaga agagaagcaa ttattaaata tgcttctaaa agaacggagg
    19141 aagaaaaaat gggcttcaga aatcggcatc gattggatgg atgggatgcc tttgacaaaa
    19201 gcgcaaattt caactttcta taaacacccc aatcttcaaa atattttgga cagcctgaca
    19261 gataaaggct atttggtttt ggagcatccg aaacaaaaaa ttggcgggcg aagaatcaaa
    19321 gatgaatccc tgcccaaagg ctacaatatt gtttcaggaa aaaaatcatt tgaaatcaat
    19381 aaaatattag acccaaatga tgttgcgcca accttagttg caatggatat ggagcacctt
    19441 ttcgtcgttg acaacggcgg tttgcgcaca cttaccggaa aagaaggttt acgcttattc
    19501 ggctatccgg acgattattc gtttgatatt cctaaaaaag acaaatacga tttattgggc
    19561 aataccgttg ccgttcctgt gattaaggcg gtatctgaaa ggcttctgca tactttataa
    19621 accgataggg ataaaatggt aaaacttact gcacaacaaa tatttgataa gttgctgaat
    19681 gaggaaaaaa tcttatcggt caatggtcaa attagatttt tcttgggcga tgtggatatt
    19741 atcgtcaaac aaaaagatgt cgtcggcaac atcattcagg aatggctcgg cggatggttg
    19801 agaaaaaggg aaattgaatt tgatgtttca accaataccc aaatgccccc cgatttcttt
    19861 ttaaataaaa aagaccgcag tagagaattg ttggaagtaa aggcgttcaa ccgaaatgcc
    19921 agtccgggtt ttgatattgc agattttaaa atgtattctg atgaaatcat tcataaaccc
    19981 tatatgctgg atgtagatta tttaatattc ggttacgata tggacgacaa cggcaatgta
    20041 accatcaagg atttatggct taaaaaagta tggcaaatta cgagaagcat ggatgggtgg
    20101 gcaattaatc ttcaagtcaa aaaaggcgtg gtgcataaaa tccgcccggg tgtttggtac
    20161 agcataaata aaaagaatat gcctatgttt gaatgcttgg aagattttgt ttccgcaatt
    20221 gaagaaaccg tttatcaaaa cccggcaaca cggcataacg catccttatg gaaaaagaaa
    20281 tttgaggaag cctataaaaa acactacaac cgatcgattt ccatacctcg ttggcacgaa
    20341 attgcacaca aatacaaaaa gaaataaccc ttcaaccatc aacccataag gaaacttgaa
    20401 atgaccaaac atatcgccat cctccgaggt gacggcatcg gtcccgaaat cgtcgccgaa
    20461 accgtccgcg tactcgacaa actcatcgcc caaggtttgg atgccggcta cgaatacgcc
    20521 ccattgggcg gcgaagccta tgacgaatac ggtcatcctt atcccgaatt tacgcaaaac
    20581 ctctgccgca aagccgatgc cgtcctgctt ggtgcagtcg gttctcctca atacgacaac
    20641 ctcgaccgtc cgttgcgccc tgagcgcggc ctgttggcaa tccgtaagga tttgaacctg
    20701 tttgccaatt tgcgtcctgc tgttttatat cccgaattag ccaacgcctc cacgctgaag
    20761 cctgaaatcg ttgccggttt ggatattttg attgtgcgcg aactcaccgg cgacatctat
    20821 ttcggcgaac cgcgcggcat ccgcgttctg gaaaacggcg aacgcgaagg ctacaacacc
    20881 atgaaataca gcgaaagcga aatccgccgt attgcccatg ttgccttcca atccgcccaa
    20941 aaacgcagca aaaaagtctg ttccgtaggc aaagccaacg ttttggaaac caccgaattg
    21001 tggcgcgaaa tctttgaaga aatcggcaaa gagtaccctg atgtcgagct ttcccatatg
    21061 tacgtcgaca acgccgccat gcagctcgtg cgtgcgccca aacaattcga cgtcattgcc
    21121 accggcaaca tcttcggcga cattctctcc gacgaagcct ccatgctgac cggctccatc
    21181 ggtatgctgc cttccgcctc gctggacgaa aacggcaaag gcctgtacga accgtctcac
    21241 ggctccgccc ccgacatcgc cggacaaaac aaagccaacc cgctggccac catcctctcg
    21301 ctcgcaatgt tgctgcgtta cagcctgaac gacgaagcgc gcgcgcaaca agttgaaaac
    21361 gccgtccaaa aagtgctgca acaaggcttg cgtaccagcg acatttacga agaaggcaca
    21421 aaactcgttt cctgctccga aatgggcgat gcggtactcg ccgccttgta aaaaaacaaa
    21481 gcgcggatca caccgcgctt tttcatccgc ccttttccgc ccgccccgtt cgtcaaccgc
    21541 ctgcaaaccc accgtttacc ggcaggaaat gccataaatc cctgcctatg ttaggataaa
    21601 cgcctttacc ggcccacaca aaggattatc atcatgaaaa aaatcatctt cgccgcactc
    21661 gcagccgccg ccatcagtac tgcctccgcc gccacctaca aagtggacga atatcacgcc
    21721 aacgcccgtt tcgccatcga ccatttcaac accagcacca acgtcggcgg tttttacggt
    21781 ctgaccggtt ccgtcgagtt cgaccaagca aaacgcgacg gtaaaatcga catcaccatc
    21841 cccattgcca acctgcaaag cggttcgcaa cactttaccg accacctgaa atcagccgac
    21901 atcttcgatg ccgcccaata tccggacatc cgctttgttt ccaccaaatt caacttcaac
    21961 ggcaaaaaac tggtttccgt tgacggcaac ctgaccatgc acggcaaaac cgcccccgtc
    22021 aaactcaaag ccgaaaaatt caactgctac caaagcccga tggagaaaac cgaagtttgt
    22081 ggcggcgact tcagcaccac catcgaccgc accaaatggg gcatggacta cctcgttaac
    22141 gttggtatga ccaaaagcgt ccgcatcgac atccaaatcg aggcagccaa acaataaatc
    22201 ttgatgcgaa tcagcacaaa tgccgtctga acgtccttca aacggcattt gtgccgtctt
    22261 catcaaaccg ccccgccaac ggtaagccga tatggcggag cacaatccgc cgaaagatat
    22321 ttcagcggca ggcagggctt gccggaaagt ccggaaa
//
LOCUS       DAXHNP010000015        21595 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.015, whole genome shotgun sequence.
ACCESSION   DAXHNP010000015 DAXHNP010000000
VERSION     DAXHNP010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21595
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.015"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(48..1214)
                     /gene="odhB"
                     /locus_tag="ACFM5C_000432"
     CDS             complement(48..1214)
                     /gene="odhB"
                     /locus_tag="ACFM5C_000432"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HFC6068195.1"
                     /translation="MIIDVKVPMLSESVSEGTLLEWKKKVGEAVARDEILIDIETDKV
                     VLEVPSPQAGVLVEIVAQDGETVVADQVLARIDTAATAAAEAPVAAPAEAAPAAAPAA
                     AQNNAAMPAAAKLAAETGVDVNALQGSGRDGRVLKEDVQNAAAKPAAAAAPAGARPEE
                     RVPMSRLRARVAERLLASQQENAILTTFNEVNMKPIMDLRAKYKEKFEKEHGVKLGFM
                     SFFVKAAVAALKKYPVVNASVDGKDIVYHGYFDIGIAIGSPRGLVVPILRDADQMSIA
                     DIEQAIVDYAKKAKDGKIAIEDLTGGTFSITNGGTFGSMMSTPIINPPQSAILGMHAT
                     KERAVVENGQVVVRPMMYLALSYDHRIIDGREAVLTLVAIKDALEDPARLLLDL"
     gene            complement(1314..4142)
                     /locus_tag="ACFM5C_000433"
     CDS             complement(1314..4142)
                     /locus_tag="ACFM5C_000433"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HFC6068196.1"
                     /translation="MMDEKLNFSYLFGSNAPYIEELYEAFLENPDAVDEKWKQYFTDL
                     SKQPGTVAVDVAHTPIRESFVTLAKKKIASAVAGGADEAMLKKQVSVLRLISAYRIQG
                     VGAAQLDPLKRIPPRDIEALDPKFHGLSDADMTLQFNMGEGDFANRGKLPLSQIISNL
                     KQTYCGHIALEYIYIPNTEERRWVRNYFESVLSTPHYNADQKRRILKEMTAAETLERY
                     LHTKYVGQKRFGVEGGESAIAGLNYLIQNASKDGVEEVIIGMAHRGRLNVLVNILGKK
                     PGDLFAEFEGRAEIKLPSGDVKYHMGFSSDIATPHGPMHVSLAFNPSHLEIVNPVVEG
                     SARAKQKRLGENGRDKVLPVLIHGDSAFIGLGVNQATFNLSKTRGYTTGGTVHIVINN
                     QIGFTTSDIRDTRSTVHCTDIAKMVSAPVIHVNGDDPERVCFAIQAALDYRKKFHKDI
                     VIDVVCYRKWGHNEGDDPTLTQPMMYKKVSQHPGARALYTEQLIAEGVVTQAEADGYI
                     QAYRDALDKGEHVEQTTLSNFQRTQIDWSKYQGKDWREHIETGLPAADIERLTEKFTA
                     VPEGFALHPTAKRVIEARKAMASGKQAIDWGMAETLAYASLVTKGHGVRISGEDSGRG
                     TFSHRHAVLHDQKREKWDDGTYVPLRHMGEGMGEFLVIDSILNEEAVMAFEYGFACSA
                     PDKLTIWEAQFGDFANGAQVTIDQFLSSGETKWGRLCGLTTILPHGYDGQGPEHSSAR
                     VERWLQLCSENNMQVIMPSEASQMFHLLQRQVLGSYRKPLVIFMSKRLLRFKGAMSPL
                     ENFTEGSTFRPVIGDTAERASNGSVKRVVLCAGQVYYDLEAGRTERKLEDDVAIVRVE
                     QLYPFPYEEVKAELAKYPNAKSVVWAQEEPKNQGAFYQIRHRIEDVISEEQKLSYAGR
                     PSSASPAVGYSSKHIAQLKQLVEDALAL"
     gene            complement(4347..5630)
                     /gene="gltA"
                     /locus_tag="ACFM5C_000434"
     CDS             complement(4347..5630)
                     /gene="gltA"
                     /locus_tag="ACFM5C_000434"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004108 - citrate (Si)-synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFC6068197.1"
                     /translation="MSKSIKLNVPGQAGLELPVLEASIGHDVVDIRGLTKNTGLFSFD
                     PGFVSTASCESKITYIDGDQGLLYYRGYPIEQLAEKSDYLEVCYLLIYGELPTPEQKA
                     EFDNTVRRHTMVHEQLTWFFRGFRRDAHPMAMMVGVVGALSAFYQDSLDISNPEHRKI
                     AIYRLISKIPTIAAMCYRYSNGLPFNYPKNNLSYSENFLHMMFATPCEDYKPNPVLAR
                     ALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGASHGGANEAVLKML
                     DEIGDVSNVAAYMEGVKQRKYRLMGFGHRVYRNMDPRASIMRETCYEVLKELGLEDSP
                     KFKLAMELEQIALKDPFFIERKLYPNVDFYSGIVLSALGIPTEMFTVIFALSRSVGWI
                     SHWHEMISDPSLKIGRPRQLYTGSERRDYVPAGER"
     gene            complement(5742..5990)
                     /locus_tag="ACFM5C_000435"
     CDS             complement(5742..5990)
                     /locus_tag="ACFM5C_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HFC6068198.1"
                     /translation="MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELS
                     EFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA"
     gene            complement(5994..6701)
                     /locus_tag="ACFM5C_000436"
     CDS             complement(5994..6701)
                     /locus_tag="ACFM5C_000436"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (quinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HFC6068199.1"
                     /translation="MEKMSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKA
                     QDDTLSFRRSCREGICGSDGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIV
                     DMTQFFKQYHSVKPYVVNDNPIDADKERLQTQEERKELDGLYECILCACCSTACPSFW
                     WNPDKFVGPSGLLNAYRFIADSRDTITNERLDDLNDPYRLFRCHTIMNCVDVCPKHLN
                     PTRAIGKIKEIMLKRAV"
     gene            complement(6821..8584)
                     /gene="sdhA"
                     /locus_tag="ACFM5C_000437"
     CDS             complement(6821..8584)
                     /gene="sdhA"
                     /locus_tag="ACFM5C_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HFC6068200.1"
                     /translation="MGFPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRS
                     HTVAAQGGISASLGNVQEDRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHM
                     GMPFDRVESGKIYQRPFGGHTAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQF
                     FVEWTAQDLIRDENGDVVGVTAMEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMN
                     TGDGLGICARAGIPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNADGERFMERY
                     APTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHVLLKIDHIGAEKIMEKLPGIREISI
                     QFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVPQGEDYEVPVKGLYAAGECACAS
                     VHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKPLPANAGELTRQRIERLDNQT
                     DGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIAERVKRTEIKDKSKVWNTA
                     RIEALELDNLIEVAKATLVSAEARKESRGAHASDDHPERDDENWMKHTLYHSDTNTLS
                     YKPVHTKPLSVEYIKPAKRVY"
     gene            complement(8587..8928)
                     /gene="sdhD"
                     /locus_tag="ACFM5C_000438"
     CDS             complement(8587..8928)
                     /gene="sdhD"
                     /locus_tag="ACFM5C_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HFC6068201.1"
                     /translation="MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEY
                     SAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVG
                     CLVYSVKVIWG"
     gene            complement(8922..9299)
                     /gene="sdhC"
                     /locus_tag="ACFM5C_000439"
     CDS             complement(8922..9299)
                     /gene="sdhC"
                     /locus_tag="ACFM5C_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HFC6068202.1"
                     /translation="MSVKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYF
                     LSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTA
                     RNTAKAVFASALVLTVVLGALLW"
     gene            complement(9582..10985)
                     /locus_tag="ACFM5C_000440"
     CDS             complement(9582..10985)
                     /locus_tag="ACFM5C_000440"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6068203.1"
                     /translation="MKKIQADVVVIGGGTAGMGAFRNARLHSDNVYLIENNVFGTTCA
                     RVGCMPSKLLIAAAEARHHALHTDPFGVHLDKDSIVVNGEEVMQRVKSERDRFVGFVV
                     ADVEEWPADKRIMGSAKFIDEHTVQIDDHTQITAKSFVIATGSRPVILPQWQSLGDRL
                     IINDDVFSWDTLPKSVAVFGPGVIGLELGQALHRLGVKVEIFGLGGIIGGISDPVVSD
                     EAKAVFGEELKLHLDAKTEVKLDADGNVEVYWEQDGEKGVFVAEYMLAAVGRRPNVDN
                     IGLENINIDKDARGVPVADPLTMQTSIPHIFIAGDASNQLPLLHEAADQGKIAGDNAG
                     RYPNIGGGLRRSTIGVVFTNPQIGFVGLKYAQVTAQYQPDEFVIGEVSFKNQGRSRVM
                     LVNKGHMRLYAEKATGRFIGAEIVGPAAEHLAHLLAWAHQMKMTVPQMLDMPFYHPVI
                     EEGLRTALRDADAKLKA"
     gene            complement(11234..11971)
                     /locus_tag="ACFM5C_000441"
     CDS             complement(11234..11971)
                     /locus_tag="ACFM5C_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HFC6068204.1"
                     /translation="MALQDRTGQKVPSVVFRTRVGDTWKDVSTDDLFKGKKVVVFSLP
                     GAFTPTCSSSHLPRYNELFGAFKENGVDAIYCVSVNDTFVMNAWAAEEESDNIYMIPD
                     GNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVNDGVVEKMFIEPEEPGDPFKVSDADTM
                     LKFVAPNWKAQESVAIFTKPGCQFCAKAKQALQDKGLSYEEIVLGKDATVTSVRAITG
                     KMTAPQVFIGGKYIGGSEDLEAYLAKN"
     gene            complement(12247..14523)
                     /gene="metE"
                     /locus_tag="ACFM5C_000442"
     CDS             complement(12247..14523)
                     /gene="metE"
                     /locus_tag="ACFM5C_000442"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFC6068205.1"
                     /translation="MTTLHFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLRE
                     KNWKHQVAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN
                     KDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAKHYVQQLQEAQALGLKAKPTVVGPL
                     TFLWVGKEKGAVEFDRLSLLPKLLPVYVEILTALVEAGAEWIQIDEPALAVDLPKEWV
                     EAYKDVYATLSKVSAKILLSTYFGSVAEHAALLKALPVDGLHIDLVRAPEQLDAFADY
                     DKVLSAGVIDGRNIWRANLNKVLETVEPLQAKLGDRLWISSSCSLLHTPFDLSVEEKL
                     KANKPDLYSWLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRA
                     DVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARSAFK
                     KGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQY
                     GWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFV
                     RNDIPRSTVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAG
                     ESFRLSSAGCEDSTQIHTHMCYSEFNDILPAIAAMDADVITIETSRSDMELLTAFGEF
                     QYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETLE
                     QLQVMMNVTHKLRAELAK"
     gene            complement(14661..15539)
                     /gene="metF"
                     /locus_tag="ACFM5C_000443"
     CDS             complement(14661..15539)
                     /gene="metF"
                     /locus_tag="ACFM5C_000443"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HFC6068206.1"
                     /translation="MNYAKEINALNNSLSDLKGDINVSFEFFPPKNEQMETMLWDSIH
                     RLQTLHPKFVSVTYGANSGERDRTHGIVKRIKQETGLEAAPHLTGIDASPDELRQIAK
                     DYWDSGIRRIVALRGDEPAGYEKKPFYAEDLVKLLRSVADFDISVAAYPEVHPEAKSA
                     QADLINLKRKIDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQL
                     GKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN
                     RSELTYAICHILGVRP"
     gene            15739..16014
                     /locus_tag="ACFM5C_000444"
     CDS             15739..16014
                     /locus_tag="ACFM5C_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HFC6068207.1"
                     /translation="MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKE
                     YPLFSLDTSSASHPVYTGKQRNVNTEGRASKFNQRFQSVMSSFRKDK"
     gene            16014..16139
                     /gene="ykgO"
                     /locus_tag="ACFM5C_000445"
     CDS             16014..16139
                     /gene="ykgO"
                     /locus_tag="ACFM5C_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HFC6068208.1"
                     /translation="MQVLSSLKTAKQRHRDCQIVRRRGKVYVICKSNPRFKARQR"
     gene            complement(16245..16445)
                     /locus_tag="ACFM5C_000446"
     CDS             complement(16245..16445)
                     /locus_tag="ACFM5C_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068209.1"
                     /translation="MIGRLFRIFFFFALAALIMNRLFSRRQKRALREVAEISARVLLG
                     AAAATLFWYLFMLYFKHIPDSY"
     gene            16588..17727
                     /locus_tag="ACFM5C_000447"
     CDS             16588..17727
                     /locus_tag="ACFM5C_000447"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HFC6068210.1"
                     /translation="MSQNASVGIVMPQKIPFEVPLVLENGKTLPRFDLMIETYGELNA
                     EKNNAVLICHALSGNHHVAGRHSAEDKYTGWWDNMVGPGKPIDTERFFVVGLNNLGGC
                     DGSSGPLSINPETGREYGADFPLVTVKDWVKSQAALADYLSIGQWAAVVGGSLGGMQA
                     LQWAISYPERVRHALVIASAPKLSTQNIAFNDVARQAILTDPDFNEGHYRSRNTVPAR
                     GLRIARMMGHITYLAEDGLGKKFGRDLRSNGYQYGYGVEFEVESYLRYQGDKFVGRFD
                     ANTYLLMTKALDYFDPAADFGDSLTRALQNVKAKFFVASFSTDWRFAPERSHELVKAL
                     IAAQKSVQYIEVKSAHGHDAFLMEDEAYMRAVAAYMNNVYKGCQQ"
     gene            17724..18305
                     /gene="metW"
                     /locus_tag="ACFM5C_000448"
     CDS             17724..18305
                     /gene="metW"
                     /locus_tag="ACFM5C_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HFC6068211.1"
                     /translation="MNLRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYG
                     IEIDTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLM
                     RVAKQAIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAK
                     NNIRVLERAVMTGNRQVKHFPNLLGSLAFYRVG"
     gene            18422..19267
                     /locus_tag="ACFM5C_000449"
     CDS             18422..19267
                     /locus_tag="ACFM5C_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NMB0938 family lipoprotein"
                     /protein_id="HFC6068212.1"
                     /translation="MKNKTSSLLLWLAAIMLTACSPNKEDKTKETGASAASSPASAAS
                     SSAPQTDLQPAASAPDNVKQAESAPPSNCTDLHPATGIDDLMQQIAEHIDSDCLFALS
                     HHELETRFGLPDSGYDNIQRLLFPDIRPEDPDYHQKIILAIEDLRYGKRTISRQAQDA
                     LMEQERRLREATLLLTQGSEETRGQGEEPKRTRYFEVSATPAYSSRHNNGLGGNFQYI
                     GQLPGYLKIHGEMLENQSLFRLSNRERNPDKPFLDIHFDENGKITRIVVYEKNIYFNP
                     NLGRR"
     gene            complement(19316..19876)
                     /gene="efp"
                     /locus_tag="ACFM5C_000450"
     CDS             complement(19316..19876)
                     /gene="efp"
                     /locus_tag="ACFM5C_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFC6068213.1"
                     /translation="MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNL
                     LTGAASETIYKADDKFDVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALK
                     FIVDGMEDQCEVTFYEGNPISVELPTIIVREVEYTEPAVKGDTSGKVMKTARLVGGTE
                     IQVMSYIENGDKVEIDTRTGEFRKRA"
     gene            complement(19919..21067)
                     /gene="earP"
                     /locus_tag="ACFM5C_000451"
     CDS             complement(19919..21067)
                     /gene="earP"
                     /locus_tag="ACFM5C_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HFC6068214.1"
                     /translation="MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTD
                     DVSALRALCPDLPDVPCVHQDIHVRTWHSDAADIDTALVPDIVIETFACDLPENVLHI
                     IRRHKPLWLNWEYLSAEESNERLHLMPSLQESVQKYFWFMGFSEKSGGLIRERDYRNA
                     VRFDTEALRERLMLPEKNAPEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDS
                     LKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDKLLHLADCAVIRGEDSFVRA
                     QLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYSPETASVHRRLSDDLNGGEALSAT
                     QRLECWQTLQQHQNGWRQGAEDWSRYLFGQPSASEKLAAFVSKHQKIR"
     gene            complement(21086..21364)
                     /locus_tag="ACFM5C_000452"
     CDS             complement(21086..21364)
                     /locus_tag="ACFM5C_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068215.1"
                     /translation="MSRNLLVRWLAVCLIPLATLAVFAANPPEDKLQHLINGIILACE
                     ATFLFKFVLFDTIKHHLKQEFDLKRQTMLLFIPIILLIVYLFHYFGAF"
BASE COUNT         5332 a         5492 c         5454 g         5317 t
ORIGIN      
        1 aattcagacg gccttttcat taacaaataa aaggccgtct gaaacgatta cagatccaac
       61 aacaggcggg ctgggtcttc caacgcgtct ttaatggcta ccaaagtcaa tacagcttcg
      121 cgaccgtcga tgatacggtg gtcgtaagac agagccagat acatcattgg acggacaaca
      181 acttgaccgt tttcaaccac agcgcgctct ttagtggcat gcatacccaa aatcgcagat
      241 tgaggcgggt tgatgatcgg ggtagacatc atagaaccga aagtaccgcc gttggtaata
      301 ctgaatgtac cgccggtcag atcttcgata gcgattttgc catctttggc ttttttcgcg
      361 taatcaacaa ttgcttgttc gatgtcggca atgctcattt ggtcggcatc gcgcaggatt
      421 ggcacaacca aaccgcgtgg gctgccaatc gcgataccga tgtcgaagta gccgtggtac
      481 acgatgtctt tgccgtcaac agaagcattc acaaccgggt attttttcag ggcggcgaca
      541 gcggctttaa cgaagaagga cataaagccc aatttcacgc cgtgttcttt ctcgaatttt
      601 tctttgtact tcgcacgcaa gtccatgatt ggtttcatgt tgacttcgtt gaatgtagtc
      661 agaatggcgt tttcttgttg agaagccaag aggcgttctg caacacgggc acgcaggcgg
      721 ctcattggta cgcgttcttc aggacgtgcg ccggcagggg ctgcggctgc ggcaggtttg
      781 gcagcggcat tttgtacgtc ttctttcaat acgcgaccgt cacggccgga accttgcaat
      841 gcgttcacgt caacaccggt ctccgcagcc agtttggcgg cggcaggcat agcggcgttg
      901 ttttgtgcgg cagcaggagc ggcagccggg gcggcttcgg caggagcggc tacgggtgct
      961 tcggcagcgg cagtagcagc tgtatcgatg cgtgccaaaa cttggtcggc aacaacggtt
     1021 tcaccgtctt gcgctacgat ttcaaccaat acgccggctt gtggggaagg gacttccaaa
     1081 accactttgt ccgtttcgat atcgatcagg atttcgtcac gggcaactgc ttcgccaact
     1141 tttttcttcc attccaagag cgtgccttca gatacgcttt cagacagcat aggtactttt
     1201 acatcaataa tcattttgtg tctccaatgg ccctttcaga cggcctgttg tgtgtttttc
     1261 attctgcata tgggcattcc gcctgagcag cctcagacgg aatgccactt ggcttacaac
     1321 gccaaagcgt cttcaaccaa ttgtttcaat tgggcaatat gtttgcttga gtagcccact
     1381 gcaggcgatg cgctgcttgg acgaccggca taagacagtt tttgctcttc gctgataacg
     1441 tcttcgatgc ggtggcggat ttggtagaac gcaccttggt ttttcggctc ttcttgtgcc
     1501 caaaccacag attttgcgtt cggatatttc gccagttcgg ctttaacctc ctcgtatggg
     1561 aacggataca gctgctcaac gcggacaatc gcaacatcat cttccagttt acgctcggta
     1621 cggcctgctt ccaagtcata gtaaacctga ccggcacaca ataccacacg tttcacgctg
     1681 ccgttgcttg cgcgttcggc ggtatcaccg ataaccggac ggaaagtcga accttcggtg
     1741 aagttttcca gcgggctcat tgcacctttg aagcgcaaca ggcgtttgga catgaaaatc
     1801 accagcggtt tgcggtatga acccaaaact tggcgttgca agaggtggaa catttgcgac
     1861 gcttcagacg gcatgatgac ttgcatattg ttctcggaac acagttgcaa ccaacgttct
     1921 acgcgtgcag aggagtgctc ggggccttga ccgtcgtagc cgtgcggcag gatggtggtc
     1981 agaccgcaca aacgacccca tttggtttcg cctgaagaca ggaattggtc aatagtcact
     2041 tgcgcgccgt tggcgaagtc accgaattga gcctcccaaa tggtcagctt gtcaggcgcg
     2101 gagcaggcaa agccgtactc gaacgccatc acggcttctt cgttcaaaat ggagtcgata
     2161 accaggaact cgcccatacc ttcgcccata tggcgcagag ggacataagt accgtcgtcc
     2221 catttttcgc gtttttgatc gtgcaatacc gcatgacggt gtgagaatgt accgcgccca
     2281 gagtcctcgc cggaaatacg cacgccatgg cctttggtta cgaggctggc gtatgcgagg
     2341 gtttccgcca taccccagtc gatggcttgt ttgccggatg ccatggcttt acgcgcttca
     2401 atcacacgtt ttgcagtcgg atgcagggca aagccttccg gtacggcggt aaacttctca
     2461 gtgagacgct caatatctgc ggcaggcaaa ccggtttcga tgtgttcgcg ccaatctttg
     2521 ccttggtatt tgctccagtc gatttgcgtg cgttgaaagt tgctcaacgt tgtttgctcg
     2581 acgtgttcgc ctttgtccaa agcatcacgg taggcttgga tgtaaccgtc tgcctcggct
     2641 tgggttacca cgccttcggc aatcagttgc tcggtgtaca aagcacgcgc accggggtgt
     2701 tgcgatactt ttttgtacat catcggttgg gtcaaggtcg gatcatcgcc ctcgttgtga
     2761 ccccatttac ggtagcagac aacgtcaatc acgatgtctt tatggaattt tttgcggtaa
     2821 tccaaagcgg cttggatggc aaagcaaaca cgctcaggat catcgccgtt cacatggata
     2881 accggagcgg aaaccatttt tgcgatatcg gtacagtgta cggttgaacg ggtatcgcgg
     2941 atatcggaag tggtaaagcc gatttggttg ttgatgacga tatgaaccgt accgccggtg
     3001 gtataaccgc gcgttttaga caggttgaat gtcgcttggt tgactcccag accgataaat
     3061 gcggagtcgc cgtgaatcaa taccggcaag actttgtcgc ggccgttttc gcccaaacgt
     3121 ttttgtttgg cgcgcgcaga accttccacc accgggttga cgatttctaa gtgagacggg
     3181 ttgaacgcca aagaaacatg catcgggccg tgcggggtag caatatcgga gctgaagccc
     3241 atatggtatt tcacgtcgcc gctgggcagt ttgatttcgg cacgaccttc aaattcggca
     3301 aacaaatcgc cgggtttttt gcccaaaatg ttcaccaaaa cattcagacg gccacggtgc
     3361 gccataccga tgatgacttc ttccacgccg tctttactgg cgttttgaat caggtagttc
     3421 aaaccggcaa tcgcgctttc gccgccttcg acaccgaaac gtttctgacc gacatatttg
     3481 gtatgcagat aacgttccaa agtttcggca gcagtcatct ctttcaagat acggcgtttt
     3541 tgatcggcat tgtaatgcgg tgtggacaat acgctttcaa aataattgcg tacccagcgg
     3601 cgctcttcgg tattgggaat atagatatat tccaatgcga tgtggccgca gtaggtttgt
     3661 ttgaggttgc tgatgatttg ggacaaaggc agtttgccgc gattggcaaa atcgccctcg
     3721 cccatattga attgaagcgt catatcggca tctgacagac cgtggaattt cggatcgagg
     3781 gcttcaatat cgcgcggggg gatacgtttg agcggatcaa gttgggctgc acccacgcct
     3841 tggatacgat aggcagaaat cagccgtaaa acgctgactt gctttttcag cattgcctca
     3901 tccgcaccgc ccgcaacggc agatgcaatt ttctttttcg ccaaagtaac aaatgattcg
     3961 cgaatcggtg tgtgtgcgac atcgacagca accgtccccg gctgtttgct caaatcggtg
     4021 aaatactgct tccatttttc atcaaccgca tcggggtttt ccaaaaaagc ctcgtacaat
     4081 tcctcaatgt agggtgcgtt cgaaccgaac aggtaagaga aattgagttt ttcgtccatc
     4141 atggcgtgcg ctcttttctt taaaatataa acaaagggta gaagtccgcg tcctgacggc
     4201 tgaactgatg ccgtctgaaa agacatttta ttctacccta ttttaaaccg gattgcctgt
     4261 attgatttca tccgactaca atcaaatgta tacagaaagc aatccgattc tctaatattg
     4321 cctgtttgac aatatattaa tgtatgttac ctctctcctg ccggcacata atcgcggcgt
     4381 tccgaaccag tataaagctg gcgcgggcgg ccgattttca gcgaaggatc gctgatcatc
     4441 tcgtgccagt gcgaaatcca acctacgctg cgcgacaggg cgaagatgac ggtaaacatt
     4501 tcggtcggga tgcccagcgc ggacaggacg atgccggaat agaaatcgac gtttggatac
     4561 agcttgcgtt cgataaagaa cgggtctttc agcgcaatct gttccaattc catcgccagt
     4621 ttgaatttcg gactgtcttc caagcccaat tccttcaaaa cttcatagca ggtttcgcgc
     4681 ataatgctgg cacgcggatc catattgcgg tacacgcggt gaccgaagcc catcagacgg
     4741 tatttgcgtt gtttcacacc ttccatgtat gcggcaacat tagacacatc gccgatttcg
     4801 tccaacattt tcaacacggc ttcgttcgca ccgccgtgcg aagcacccca caggcaggcg
     4861 ataccggcag caatacaggc aaacggattc gcacccgaag agcctgccag acggacggtt
     4921 gaagttgagg cgttttgctc gtggtcggca tgcaaaataa agatgcggtc gagcgcgcgt
     4981 gccaaaacgg gattgggttt gtagtcttca cacggcgtgg cgaacatcat atgaaggaag
     5041 ttttcggaat aagaaagatt attcttcgga taattgaacg gcagaccgtt tgaatagcgg
     5101 tagcacattg ccgcaatggt cgggattttg gaaatcaggc ggtaaatcgc gattttgcgg
     5161 tgttcgggat tgctaatgtc caagctgtct tggtagaacg cagacagcgc gccgaccacg
     5221 ccgaccatca tcgccatcgg atgcgcgtcg cggcggaacc cccggaagaa ccaagtcagc
     5281 tgttcatgca ccatcgtgtg gcggcggacg gtattgtcaa attctgcctt ttgctcggga
     5341 gtcggcagtt cgccgtaaat caacaggtag cagacttcca aataatcgga tttttcggcc
     5401 agctgctcga tggggtatcc gcgataataa agcaagcctt gatcgccgtc gatgtaagta
     5461 attttagact cacagcttgc ggttgaaaca aatccggggt cgaaggaaaa caaacctgta
     5521 ttttttgtca gcccccgaat gtcaaccaca tcgtgcccga tgctggcttc caataccggc
     5581 agctccaaac ctgcctgacc cggtacgttg agtttgattg atttggacat attattgctc
     5641 ctttgcaagt tataacccac gttactgcat ccgcagcacg ttctttgcct tcagacggct
     5701 tttgcatttt gaaatctgcc tgcaggcaga tttcagatgc ctcatgcccg tctgattttt
     5761 tcaagcatcg ggataaggtg ccctttgtcc gtttccgaat gcccgttaat caaggcaagc
     5821 aattcttgat cttgaaattc aaggatttcg gaaaactcgg acagctcttt atcgctcaaa
     5881 tgctcgaatt ctttttccat aaacctgccg aagattaaat ctaactccaa caatccccgg
     5941 cgggtttgaa aacggatttt ccgtttggca atatcgtcaa aaaccatcat ttcttaaacg
     6001 gcccgcttca acataatctc tttaatctta ccgatggctc gggtcggatt caagtgtttg
     6061 gggcatacgt ccacacagtt cataatggtg tggcagcgga acaaacggta tgggtcgttc
     6121 agatcatcca aacgctcatt agtgatggta tcacggctgt ccgcaatgaa acggtaagca
     6181 ttcagcaaac cggacggacc gacgaattta tcagggttcc accaaaatga cgggcaggca
     6241 gtcgaacagc aggcgcacaa aatacactcg tacaaaccgt ccaactcttt acgctcttcc
     6301 tgagtttgca gacgctcttt gtccgcatca atcggattat cgttgacaac ataaggtttg
     6361 acggaatggt attgtttgaa gaactgggtc atatccacaa tcaggtcgcg gataacaggc
     6421 agacctggca gaggacgaat tttaaccggc tgtttcaagc cacgcagatc ggtcagacac
     6481 gccaaaccgt ttttgccgtt gatgttcata ccgtccgatc cgcaaatgcc ttcgcggcag
     6541 gaacggcgga aagacaatgt atcatcttgt gctttcaggc gcactaaagc gtccaaaagt
     6601 ttaacgtcgg ttggttccaa ttccaactcg taacgctgca tataaggttt ggcatcaacg
     6661 tccgggttgt aacggtaaat ttcaaaactc attttttcca tgagaagtgt tccttttctc
     6721 ataaactgcc caatgatttt gtattatgaa ttcaagcagt tcaatgtggg tatggttaga
     6781 tttcagacga cctttgaggc gaagaccgtc tgaaaacgca tcaataaacg cgcttggccg
     6841 gtttgatgta ttccacgctc aagggcttgg tatgcaccgg tttgtaagac aaggtattgg
     6901 tatctgaatg gtacagcgta tgtttcatcc agttttcatc atcgcgctca ggatggtcgt
     6961 ctgaagcgtg cgcaccgcgt gattctttac gtgcttcggc agacaccaaa gtcgctttcg
     7021 ccacttcaat caggttatcc aattccaaag cctcgatacg cgcggtattc cacactttgc
     7081 tcttgtcttt gatttcggta cgtttcacac gctcggcaat cgccatgact tctcgaacgc
     7141 ctttgctcag aatctcatca gtacggaaca cgccggcgtg cagttgtaca gagcgttgca
     7201 gttcgcgacg caatgcatca acgttttcac catcggtttg gttgtccaaa cgctcgatac
     7261 gttggcgggt caactcacct gcattagcag gcaaaggttt ccagtcgctt tgctctttga
     7321 tgaatttaat catgctgtcg ccggcagctt taccgaatac caccaagtcc aacagggagt
     7381 tggtacccaa gcggttcgca ccgtgtacgg aagcacaagc gcactcacct gccgcataca
     7441 gaccttttac aggcacttcg taatcttcac cttgcggaac gacaacttcg ccgtggtaat
     7501 tggtcggaat gccgcccatc atatagtggg tagtcggcac aacgggaatc gggtctttaa
     7561 tcggatcgat accggcgaac tgaatggaaa tctcgcggat gcccggcagt ttttccataa
     7621 ttttttctgc gccgatatgg tcgattttca gtaagacatg gtctttgttt ttaccgcagc
     7681 cgcgaccttc gtagatttcc atcgccatcg cgcgggaaac aacgtcgcga gaagccaagt
     7741 cttttacggt cggcgcatag cgttccataa agcgttcgcc gtcggcattc aacagaatac
     7801 cgccctcgcc gcgtacgcct tcggtaatca acacgcccgc acccgccacg ccggtcgggt
     7861 ggaattgcca gaattccatg tcttccaacg ggatacctgc acgcgcacaa atacccaaac
     7921 catcgccggt attcatatag gcattggtag aagacgcata aatacgaccg ccgccgccgg
     7981 tagcaaacat cacagcttta gcgtggaaaa tataaacttc gccggtttcc atttccatgg
     8041 cggttacgcc gacgacatcg ccgttttcat cacgaatcaa atcttgtgcc gtccattcca
     8101 caaagaattg cgtattggca cggacgtttt gttggtacaa agtatgcagc atcgcatgac
     8161 ctgtacggtc ggcaaccgca caggcgcgtt ctaccgcgcg tttaccgtgt tcggcagtat
     8221 ggccgccgaa aggacgctga taaattttac cgctttccac acggtcaaaa ggcataccca
     8281 tgtgttccaa ctcaattacg gcttcaggcg cggcgcggca cataaactca atcgcatctt
     8341 ggtcgcccaa ccagtcggaa cctttcacgg tatcgtacat gtgccagtcc caacggtctt
     8401 cctgcacatt acccagagag gcggaaatac cgccctgcgc cgctacggta tgcgaacggg
     8461 tcgggaacac tttagacaaa acggcacaat tcagaccgga tttggataat tggagggctg
     8521 cgcgtaaacc tgcaccacca ccgccgacaa tcacggcatc aaacttgcga acaggaaaac
     8581 ccatacttac ccccaaatca ctttaactga atacacgaga cagccgacca gccaaacgat
     8641 ggtggcaacc tgcaaaaaca aacgcacgcc gaagggtttg atatagtcca tccacaaatc
     8701 gcggataccc acccaagcgt gcaagaatac ggcgatgaag ctcacttggg taaatacttt
     8761 tacccaagtt tgactaaaaa atgcctgcca tgccgaatat tctttaggca gggaaaatag
     8821 aaccactaaa agtgcaacgg tataaatcaa cataataacc gcagtcgcac gttgcatcac
     8881 ccaatcgcgc aaaccgtaat gggcaccggt caatttacgt tctaccataa caacgctccc
     8941 aaaacgacag tcaaaaccaa tgcagaagca aatacggctt tagcggtatt gcgcgcagta
     9001 ttcagctcaa ggcctttgtg cgcatccaaa aataaaaagc ggataccggc aagggaatgg
     9061 tgcagataag cccacaatac gccgattaaa accagcttga ccaaaggatg ggaaacaatg
     9121 gcacggtaag tttcaaatgc agactcttga ctcagggtgc cggacaggaa atacagcagg
     9181 aaaggcagca taataaacag cccgaccccg ctgatgcggt gaaggatgga aactatcccg
     9241 ggtatcggca gacggatgtt cggcaaatcc agataaacag gacgcggttt gacagacata
     9301 gtcaattcct ctgtagttat atatcgactc aaaaaccgta aacccattgc tacactgggt
     9361 tacataaacg ttaatttacc tgttttatcc cattttgaac agtgtatttt aaaaacaaac
     9421 tgatagattt tgacaaacac gcgtgaaaac agcagattaa aagaaagatt tttagttttg
     9481 cccccttccc gacacggtat cagcatccga cctccaaccc catcctcaaa aataaaatgc
     9541 cgtctgaaaa aatttcagac ggcattgttt tgccatatcg gtcaggcttt caatttcgca
     9601 tcggcatcac gcaacgcagt acgcagacct tcctcgataa caggatggta gaacggcata
     9661 tccagcattt gcggaacggt catcttcatt tgatgcgccc atgccaacag gtgcgccaaa
     9721 tgttcggcgg cagggcctac gatttccgca ccaatgaagc ggccggttgc tttttcggca
     9781 tacaggcgca tatggccttt gtttaccagc atcacgcggc tgcggccttg gtttttaaac
     9841 gatacttcgc cgatgacaaa ttcgtcgggt tggtattgcg cggtaacctg cgcgtatttc
     9901 aaaccgacaa agccaatttg cggattggta aacaccacgc cgatggtgct gcggcgcaaa
     9961 ccgccgccga tattcggata gcggcccgcg ttgtcgccgg caatcttgcc ttgatcggca
    10021 gcttcgtgca gcaggggcag ttgattggat gcgtcgcccg caataaagat atgcggaata
    10081 ctggtctgca tggtcagcgg atcggcaacg ggtacgccgc gcgcatcttt gtcgatattg
    10141 atgttttcca aaccgatatt gtcaacgttc ggacggcggc ctacggctgc cagcatatat
    10201 tcggcaacaa atacgccttt ttcgccgtct tgctcccaat agacttctac attgccgtcc
    10261 gcatcgagtt tgacctcggt tttggcatcc agatgcagtt tcaattcttc accgaacacg
    10321 gctttcgcct cgtctgaaac gacagggtcg gaaatgccgc cgatgatgcc gcccaagccg
    10381 aaaatctcga ctttcacgcc caaacggtgc aatgcctgcc ccagttccaa accgataacg
    10441 cccggtccga acacggcaac gctcttaggc agcgtatccc atgagaaaac gtcgtcattg
    10501 ataatcaaac ggtcgcccaa agactgccac tgcggcagga taacgggacg cgagccggta
    10561 gcaatcacga aactttttgc cgtgatttgg gtatggtcgt cgatttggac ggtatgctcg
    10621 tcgataaatt tagccgaacc catgatgcgt ttgtcagcag gccattcttc cacatcggca
    10681 acgacaaagc cgacaaaacg atcgcgctcg gatttaacgc gctgcatcac ttcttcgcca
    10741 ttgacgacga tactgtcttt atccaaatgc acgccgaacg ggtcggtatg caatgcgtga
    10801 tggcgcgcct cggcggcggc aatcaagagt ttggaaggca tacagcccac gcgcgcgcag
    10861 gtcgtgccga acacattgtt ttcaatcagg taaacattgt ccgaatgtaa acgggcattg
    10921 cgaaacgcgc ccataccggc agtaccgccg ccgattacga cgacatctgc ttgaattttt
    10981 ttcataatct ttgtccttcc gttttcgtct gaaacactgc cgacacggaa tatatcggct
    11041 tcagacggca tttaaatatt ttcccaatca aaaacattat tcagataaat aaaaacaaaa
    11101 tttcgattga gtgcaacaat atccaaatcc tcttataaat atagagttat tcggagcggt
    11161 agtgtagaac cgcccgaata actctatccg gtatatcaga cagtttaatc aaaccgcctt
    11221 aagcaaacag ctatcagttt ttagccaagt aagcttccaa atcttcgctg ccgccgatgt
    11281 atttaccgcc gatgaagact tgcggggcag tcatcttgcc ggtaatggcg cgaacggaag
    11341 taacggttgc atctttgccc aatacgattt cttcgtaaga caaacctttg tcttgcaggg
    11401 cttgtttggc tttagcacag aattggcagc cgggtttggt aaagatggca acagactctt
    11461 gagccttcca attgggagca acgaatttca gcatagtatc tgcatcggat actttgaacg
    11521 gatctcctgg ttcttccggc tcgatgaaca ttttttcaac cacgccgtcg ttaaccagca
    11581 tggagtaacg ccaagaacgt ttgccgaagc ccaagtcttc tttaccgacc aacatgccca
    11641 tgccttcggt gaattcgccg ttgccgtcag gaatcatgta gatgttgtcg gattcttctt
    11701 cggccgccca agcgttcatt acgaaagtat cgtttacaga tacgcagtag attgcgtcaa
    11761 cgccgttttc tttgaacgcg ccgaacaatt cgttgtaacg cggcaggtgt gaagaagaac
    11821 aagtcggggt aaatgcacca ggcagggaga atacgactac ttttttgcct ttgaacaaat
    11881 catcggtaga cacatctttc caagtgtcgc caacgcgggt gcggaatact acggaaggta
    11941 ctttttgacc ggtacgatct tgcaaagcca ttttgagctc cttaatagat aggtttaaga
    12001 aatgattgtg aatcgctggg cattctaccc cgaataagtc gatttgtata atttatagtt
    12061 caaataatat taattattca aaactattaa tcaccaacct cgaccaactt ttacagtata
    12121 taaagccatg cctaaaaaaa acaagtctta tttgagaaaa attcttagaa actcccctac
    12181 gctcatttga aaacagaaat gccgtctgaa aagtattcag acggcatccg atcacgttat
    12241 ccctgcttat ttagccagtt cggcacgcag tttgtgggtt acgttcatca tcacttggag
    12301 ttgttccaga gtttctttcc aaccgcgtgt tttcaggccg cagtctgggt taacccacag
    12361 acgttcaacc ggtacaacct cgatggcttt gcgcaacagg tgctccactt cggcttctgt
    12421 cggtacgcgc gggctgtgga tgtcgtaaac ccccgggccg atgtcgttcg ggtattggaa
    12481 ttcgccgaac gcggtcaaga gttccatgtc ggaacgtgaa gtctcgatgg tgatcacgtc
    12541 cgcatccatt gcagcaatcg caggcaggat atcgttgaac tcggagtaac acatatgagt
    12601 gtggatttgg gtgctgtctt cgcaaccggc agaggacagg cggaaggatt cgcccgccca
    12661 gttcaggtag gcatcccaat cggcgcgttt cagcggcaag ccttcgcgga tggcaggttc
    12721 gtcaatttgg atgactttga tgccggcttt ttccagatcc aatacttcgt cgttcagagc
    12781 cagtgcgatt tgtttgcaca cggtagagcg aggaatgtcg ttgcggacga aagaccattg
    12841 cagaatggtt acagggccgg tcaacatacc tttcatcggg cgtttggtca ggctttgtgc
    12901 gtaagtagac caagccacgg tcatggcttc aggacggctt acgtcgccaa agataatcgg
    12961 tggtttcacg cagcgtgagc cgtagctttg tacccagccg tattgagtga atgcaaaacc
    13021 gctcaacaat tcgccgaagt attcaaccat gtcgttacgc tcggcttcgc cgtgtaccag
    13081 tacgtccaag tccagttttt cttgctcttc aaccaccaag gcgatttctt ttttcatcgc
    13141 ggcttcgtaa tcggcggcag acagttcgcc ttttttgaag gctgagcgtg cctggcggat
    13201 ttcggtggtt tgcgggaaag aaccgatgtt ggtagtcggt agcagaggta ggttcaacca
    13261 tgcttgttgc gctttgatac ggtcggcaaa tggagatttg cgttggtctg cgttggcagg
    13321 caaatcggcc aggcgtttgg caacgtctgc acgatggatt tcgctgctgt tggcacggga
    13381 gtcggcagca gcttggctgg cggcgagttc ttcggcaaca gaatcacggc cttcgttcaa
    13441 tgcagctttc agaacgcgca attcttgggt tttttgcagg gtgaatgcca accaagagta
    13501 caggtcgggt ttgttggctt tcagtttttc ttcaactgac aagtcaaatg gagtgtgcag
    13561 cagcgagcaa gagctggaaa tccacaaacg gtcacccagt ttggcttgca gaggctcgac
    13621 agtttccaaa actttgttca ggttggcgcg ccaaatgttg cggccgtcaa tcacgccggc
    13681 agacaggact ttgtcgtagt cggcgaacgc gtccagttgc tcgggggcgc gtaccaagtc
    13741 gatgtgcaga ccgtcaacag gcagggcttt caacaatgcg gcgtgttcgg caacagaacc
    13801 gaagtaagtg ctcaacagga ttttggcact tactttgctc aaagtagcgt aaacgtcttt
    13861 gtaggcttcc acccattctt taggcaaatc gacagccaaa gcaggctcgt cgatttgaat
    13921 ccactcggca ccggcttcaa ccaaagcagt caggatttca acgtaaacag gcaacagttt
    13981 aggcaacagg ctcagacggt cgaattcgac ggcgcctttt tctttaccca cccacaggaa
    14041 agtcaacgga cctacaacgg tcggtttggc tttcagaccg agggcttggg cttcttgcag
    14101 ttgttgaaca tagtgtttgg cattggcttt gaattcggta tcggcgtgga attcaggcac
    14161 caagtagtgg tagttggtgt cgaaccattt ggtcatttcg atagcgaatt ggtctttgtt
    14221 accgcgcgcc agttggaaga attgttccaa agacaggttt tggctgtcga agccgaagcg
    14281 ggcgggaatc gcgccggtgg cgacttgcag gtcgaggatg tggtcgtaga aagtgaaatc
    14341 gcctacggca acgaaatcgg cgttggcagc gacctggtgt ttccagtttt tctcgcgcaa
    14401 gtctttagca acagccagca attcttgctc gctgatttct ttgcgccagt atttttcttg
    14461 tgcgaatttc aattcgcgga aggcgccgac acgcgggaag cctgagaaat gtaatgttgt
    14521 catgttgaac tctccagttg gattttgtaa ggaccggttc aatccgaatc ggccggtatt
    14581 gtaaatcaga atggctcgga tggggcggtg ttttgctttt tagacacctt agatgccgtc
    14641 tgaaactgtt tgatacggct ttaagggcgc acgcctaaaa tatggcaaat ggcgtaagtc
    14701 agctcgctgc ggttaagcgt atagaagtgg aaatctttca cgccttcgcg ggacaggact
    14761 ttgaccatat cgatggcgat acttgccgcc accagattgc gcgtaccttg gtcgtcgtcc
    14821 aaaccttcat acatttgcga cagccagctt gggattttga cgttggttac ttgagccatt
    14881 ttaccgagct gcttgaagtt ggtaacaggc aaaataccgg ggacgatttc cacatcgata
    14941 cccaacatca cgcagcggtc gcggaagcgc aggtagcgtt ccacatcgaa gaagaattgg
    15001 gtgatgacgt ggttcgcgcc cgcatcgatt ttgcgtttca aattaatcag gtcggcttgt
    15061 gcggatttcg cttcgggatg cacttcggga tatgctgcta cagagatgtc gaagtcggcg
    15121 acggagcgta atagcttaac caagtcttcg gcgtaaaacg gttttttctc ataaccggcc
    15181 ggctcgtctc cgcgcagggc gacaatgcgg cggatgccgc tgtcccaata atctttggca
    15241 atttggcgca attcgtcggg agaagcgtcg ataccggtca ggtgaggcgc ggcttccaag
    15301 ccggtttcct gtttgatgcg tttgacgatg ccgtgtgtgc ggtcgcgctc gcctgagttt
    15361 gcaccgtaag ttacggaaac aaatttcggg tgcaaggttt gcaggcgatg gatggaatcc
    15421 cacagcatgg tttccatttg ttcgtttttc ggcgggaaaa attcgaatga aacgttgatg
    15481 tcgcctttca aatcggaaag gctgttattt aacgcattga tttcttttgc gtaattcatg
    15541 gctgcgtacc ttttattatc ttttatatga tgtttcaggc aacataataa agttgcgcca
    15601 aacatgagtc aatttcaaaa ttttcagatt tatcatgaaa atttctaata tattacaaaa
    15661 atagttaaat ttccttgtac agcccttcta aactatgcta gagtttgtta tgttataaca
    15721 ctgaaagcaa ggcaatatat gaaaccgaat attcatcccg acaattaccg aaccgtcctt
    15781 tttttcgata gcagcgccaa tgaaggctgg ttaatccgct cctgtgccga aacacacgga
    15841 aaaacgatgg tttggacaga cggcaaagaa tatccgctgt tttcgctgga tacttcttcc
    15901 gcatcccatc ccgtctatac tggcaaacag cgcaacgtca acaccgaagg ccgtgccagc
    15961 aaattcaacc aacgtttcca atccgtaatg tcatcgttta gaaaggacaa ataatgcagg
    16021 ttctgtcttc actcaaaacc gccaaacaac gccaccgcga ctgccaaatc gtcaggcgca
    16081 ggggcaaagt ttacgtcatc tgcaaaagca atccgcgttt taaagcgcgc caacgctgac
    16141 cccctgccct tcctgcttcg gttgtaaatc ccctcctacc gcaagccctt ttcaaaaaat
    16201 gccgtctgaa acagaaaaat gcgtttcaga cggcattttt tccgtcaata cgaatccgga
    16261 atgtgtttga aatacagcat aaacagatac caaaacagcg tcgcggcggc cgcaccgagc
    16321 agcacccggg cactgatttc ggcaacttcg cgcagggcgc gtttctgcct gcggctgaag
    16381 aggcggttca taatcagcgc ggcaagtgcg aaaaagaaaa aaatacggaa aagtctgcct
    16441 atcatgtcgg gaagcgaaaa gtatggttcg ggcgcggcgg catggggaag gatgtttcag
    16501 cgcgtcaggc tgcttgtccg accgtgtcaa aaagtcatgc cgtttgcgat ataataacgc
    16561 tttttgccgt atttgttgga acaggatatg agtcaaaatg cctcggtggg cattgtaatg
    16621 ccccaaaaaa ttccgtttga ggtgccgctg gttttggaaa acggtaaaac tttgccgcgt
    16681 ttcgatctga tgattgaaac ctacggcgag ctgaatgctg aaaaaaacaa tgcggtttta
    16741 atctgccacg cgctgtcggg caaccatcat gttgcgggca ggcattcggc ggaagataaa
    16801 tatacgggct ggtgggacaa tatggtcgga cctggcaaac cgattgatac ggaacgtttt
    16861 ttcgtggtcg gtttgaataa tctgggcggc tgcgacggca gcagcgggcc tttgtcgatc
    16921 aatcctgaaa cgggtaggga atacggcgcg gattttccgc tggttacggt gaaggactgg
    16981 gtaaaatccc aagccgcgct tgccgattat ctcagcatcg ggcaatgggc ggcggttgtc
    17041 ggcggcagct tgggcggcat gcaggctttg cagtgggcga tttcctatcc cgaacgcgtg
    17101 cgccacgcct tggtgattgc gtccgcgccg aaactgtcca cgcaaaatat cgcgttcaac
    17161 gatgtggcgc gtcaggcgat tttgaccgat cccgatttca acgaaggaca ttaccgcagc
    17221 cgcaacaccg ttcccgctcg gggcttgcgg attgcccgca tgatggggca catcacctat
    17281 cttgccgaag acggtttggg caaaaaattc ggacgcgatt tgcgttccaa cggctatcaa
    17341 tacggctatg gcgttgaatt tgaagtagaa tcctatctgc gctatcaagg cgacaaattc
    17401 gtcgggcggt ttgatgccaa cacctatttg ctgatgacca aggctttgga ctatttcgat
    17461 ccggcggcag atttcggcga cagcctgacc cgcgccctgc aaaatgtgaa agcgaaattc
    17521 tttgtcgcca gcttcagcac cgactggcgt ttcgcacccg aacgttcgca cgaactggtc
    17581 aaggcactga ttgccgccca aaaatccgtg cagtatatcg aagttaaatc cgcacacggg
    17641 cacgatgcct ttttaatgga agacgaagcc tatatgcgtg cggtcgccgc ctatatgaac
    17701 aacgtttata agggatgtca gcaatgaacc tgcgcgatga tttgcaactg atttacgacc
    17761 ggatacccga aggcagccgc gtcttggact tgggctgcgg cgacggcgaa ctgcttgccg
    17821 cattggtcga acacaaaaaa tgcagcggct acggcatcga aatcgacacc gacagcgtga
    17881 ttgccgcgat gtcgcgcggc gtgaatgtta tccaagccga tttggaagaa ggtttaaccg
    17941 cattcaacga tcaaagtttt gatgtgattg tgttgagcca aaccatccaa gcgatgcaga
    18001 ataccgaaaa aatcctgcgc tgcctgatgc gcgttgccaa acaggcgatt gtcagcttcc
    18061 cgaatttcgg ctactggcgc aaccgtgtcc aaatcgcact cggcggacat atgccggttt
    18121 ccgaacgtat gccctaccat tggtacgaca cgcccaatat ccattggtgc acgctcaaag
    18181 actttgattt gttgtgcgcc aaaaacaaca tccgcgtcct cgaacgcgcc gtgatgacgg
    18241 gcaacagaca ggtcaaacat ttccccaacc ttttgggcag cctggcgttt taccgcgtcg
    18301 ggtaagacag gttgagaacc ttgtcggcaa taacaggttc ttcggttcta ttaacaacag
    18361 gccgtctgaa aaatgaaacg gcaggttttc agacggcctt tttaatattg gaaacaatag
    18421 aatgaaaaac aaaacctcat cacttctctt atggcttgcc gcaatcatgc tgaccgcgtg
    18481 ttccccgaac aaagaagata aaaccaaaga aaccggcgca tctgccgctt cgtccccggc
    18541 atccgccgct tcgtcttccg cgccccaaac cgatttgcaa ccggccgcat ccgcccctga
    18601 taacgtcaag caggcagaaa gcgcgccgcc gtcaaattgc accgacctgc accccgccac
    18661 cggcattgac gatctcatgc agcaaatcgc cgaacacatc gactcggact gtctgtttgc
    18721 cctttcccat cacgaactgg aaacccgttt cggcttaccc gacagtggct atgacaacat
    18781 acagcggctg ctgtttcccg acatccgccc tgaagatccc gactaccatc agaaaatcat
    18841 actggcaatt gaagacttgc gttacggaaa gcgcacgatc agccggcagg cacaagatgc
    18901 cttgatggaa caggaacgcc gcctccgaga agcgacgctg ttgctgacac agggcagcga
    18961 agaaacccgc gggcaaggcg aggagccgaa acgcacgcgt tattttgaag tttcggcaac
    19021 ccctgcctat tcgagccggc acaacaacgg acttggcggc aatttccaat acatcggcca
    19081 attgcccggc tatctgaaaa tacacggaga aatgcttgaa aaccaatcac tcttccggct
    19141 gtccaaccgt gaacgcaatc ccgacaaacc gtttttagac atccattttg acgaaaatgg
    19201 caaaatcacg cgtattgtcg tttacgaaaa aaacatctac ttcaatccaa acttggggcg
    19261 aagataaaaa aatgccgtct gaaagccttt cagacggcat ttttcaagta ggatatcagg
    19321 cgcgtttgcg gaattcgccg gtgcgggtat cgatttcgac tttgtcgccg ttttcgatgt
    19381 aagacatcac ttggatttcg gtgccgccga ccagacgcgc ggttttcatc actttgccgg
    19441 aagtgtcgcc tttgacagca ggctcggtgt actcgacttc gcgtacgatg atggtaggca
    19501 gttcgacaga aatggggttg ccttcgtaga aggtaacttc gcattggtct tccataccgt
    19561 caacgatgaa tttcaacgcg tcgccgatgt tgtcggcttc gatttcgtat tggttgaatt
    19621 cttcgtccat aaagacgtac atcgggtcgg caaaatagct gtacgtacag tttttgcggg
    19681 acaggatgac cacgtcgaat ttgtcgtcgg ctttgtaaat ggtttcggaa gccgcgccgg
    19741 tcagcaggtt tttcagtttc atgctgactt tggcggaaga gcggccgcct ttgatgtatt
    19801 cggttttttg aacgaccata ggatcgttgc cgaccataaa tacattgccg gcgcgcagtt
    19861 cttgtgctgt tttcattgtg attttccaat caaatcggtt gtcgtaaaac gcgctattct
    19921 agcgtatttt ttgatgcttt gaaacaaagg cggcgagttt ttcggatgcg gaaggctgcc
    19981 cgaaaagata acggctccaa tcctccgcgc cttgccgcca gccgttttga tgttgttgca
    20041 gggtttgcca acattcgagg cgttgcgtgg cggataaagc ctctccgccg ttgaggtcgt
    20101 ctgaaaggcg gcggtgtacc gatgcggttt cgggcgagta aaatccatgc gccttatccc
    20161 aaaaggcgtg gagtttatcg agatggacat tctcgtcttg cgggtagatg tgccaaaaga
    20221 agggtttgcc ggcaagctgg gcgcgcacga aactgtcttc gccgcgtatc acggcgcagt
    20281 cggcgaggtg cagcagtttg tcgaagtcct gttgcggcac gaaagggatt ttgacgaggc
    20341 ggacggatgc cgtctgaaaa acatcgccgt cgttttgcag ggcatcttgc ggaataacgc
    20401 cgctttgttt gaggctgtcg atgatttgcg tccccgccag caacagtgtc atcgggctgc
    20461 ctgcctgtcg ccacatttcc agccactttg cccaaacatc gctccgatag ccgaaaagca
    20521 gccattcggg ggcgtttttt tcgggaagca tcagccgctc tcgcaaggct tcggtatcga
    20581 aacggacggc atttcggtaa tcgcgttcgc gtatcaaccc gccgcttttt tcgctgaaac
    20641 ccataaacca aaaatatttt tgaacactct cctgcagcga aggcatcaga tgcagccttt
    20701 cattgctttc ttccgcgctc aaatattccc aattcagcca aagcggcttg tgtcggcgga
    20761 tgatgtgcag cacattttcg ggcaggtcgc aggcaaaagt ttcgataacg atatcgggaa
    20821 caagggcagt atcgatatcc gccgcatcgg aatgccaagt gcggacatga atatcctgat
    20881 gaacgcaggg aacatcgggc aaatcagggc aaagcgcacg caaggcggac acatcgtccg
    20941 tccacaaatg cacctgccaa ccgagttcgc ggtgcaaaac acgggcgagc cgccacgaaa
    21001 cgccgatgtc gccgaaattg tcgatgacct tgcaaaaaat ccaacagaca aaaggaggag
    21061 tattcataga aataacggaa acaagctaaa acgcgccgaa atagtggaac aaatacacaa
    21121 tcagcaaaat aatcggaata aacagcaaca tagtttgacg tttcaaatca aactcttgtt
    21181 tcaaatgatg cttgatggtg tcgaaaagga cgaatttaaa caaaaacgtc gcttcgcagg
    21241 caaggatgat gccgttgatc agatgctgga gtttgtcttc gggcggattg gcggcgaaaa
    21301 cggcaagcgt cgccaacggg atgaggcaga cggcaagcca acggacaagc aggtttcgag
    21361 acattgcaag gctttcaaaa aaagcaaaac gccattatcg ccccaagcgc acgccttgtc
    21421 taacggacgc accggagatg ccgtctgaag ccttgccgca ggaaaacacc gcaccgccga
    21481 acctttaaat acgcccgaga cgggcgttcc ccgaaaaatc ggacgctgcc gccgatgcct
    21541 gaggacaagg cggcagcagg cacgggcata ttgaaaaccc ggcgcgtcgg tttga
//
LOCUS       DAXHNP010000016        21469 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.016, whole genome shotgun sequence.
ACCESSION   DAXHNP010000016 DAXHNP010000000
VERSION     DAXHNP010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21469
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.016"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(92..783)
                     /locus_tag="ACFM5C_000453"
                     /pseudo
     CDS             complement(92..783)
                     /locus_tag="ACFM5C_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255623.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
     gene            complement(1042..1857)
                     /locus_tag="ACFM5C_000454"
     CDS             complement(1042..1857)
                     /locus_tag="ACFM5C_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068216.1"
                     /translation="MASIALYRLSFPVAAGGSGSRCTLCTKVHRESMLAIYSINILIY
                     NEKMFFRVTLYFVKNFVSFSKTRKSNEMMQKHKCLIDFILTVASQIAYADLPLSLEEL
                     LTDKGKFKLESSISYINTERNQSEFANPIYVQTSATKIATVMAMMITPVMAQNLDSQV
                     FDSQNVKAIQLSQAEMKETQGEFVPIIAAAAFGGALGTWGYHGANLYNHGKLGTAQGA
                     ATAAGIGAATGVAATGLAAAAGGGLAGNLAWRPGIHALGFGANAANNAVNSRK"
     gene            complement(1888..2046)
                     /locus_tag="ACFM5C_000455"
     CDS             complement(1888..2046)
                     /locus_tag="ACFM5C_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068217.1"
                     /translation="MKTPLPICTLSALAACTLSGQGGSRVYGEIKARDLCVTAPILLS
                     AFCLACSR"
     gene            complement(2043..2885)
                     /locus_tag="ACFM5C_000456"
     CDS             complement(2043..2885)
                     /locus_tag="ACFM5C_000456"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6068218.1"
                     /translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDNRLS
                     YSKWVRPMLVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
                     QNDPTDERVLLAQAIEEKHAAEKAQEQTVSGASYVLREIGADDTATAFAALSVLRSAL
                     TDINRFTEQINKVQRPQGYRLLGIFEEGKHNAVAVCGFREACTLAGGRHIHIDDIVTL
                     PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
                     CDPK"
     gene            3121..4041
                     /gene="pyrB"
                     /locus_tag="ACFM5C_000457"
     CDS             3121..4041
                     /gene="pyrB"
                     /locus_tag="ACFM5C_000457"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HFC6068219.1"
                     /translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
                     IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
                     IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
                     DLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
                     WADILYMTRVQRERFDEQEFAKIQGKFNLEASMLAHAKPNLRVLHPLPRVDEIHPDVD
                     ATPHAYYFEQATNGVYARMAILSLVLNEEV"
     gene            4051..4509
                     /gene="pyrI"
                     /locus_tag="ACFM5C_000458"
     CDS             4051..4509
                     /gene="pyrI"
                     /locus_tag="ACFM5C_000458"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009347 - aspartate carbamoyltransferase
                     complex [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HFC6068220.1"
                     /translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
                     FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
                     AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
     gene            4574..5239
                     /locus_tag="ACFM5C_000459"
     CDS             4574..5239
                     /locus_tag="ACFM5C_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068221.1"
                     /translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
                     SALSAVALVWLAWAFVSARSKAKAEKFYREKMIQNESIHPVLHASLQHLEHKPQMLAL
                     LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
                     IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALELGALNQALQEISKTSEKSKR
                     IFY"
     gene            complement(5302..6519)
                     /locus_tag="ACFM5C_000460"
     CDS             complement(5302..6519)
                     /locus_tag="ACFM5C_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6068222.1"
                     /translation="MQRRIITLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLW
                     GISGKYLYSPWQWSRLWDANRDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVV
                     KMSPDKEVSGYGIPAIDVNFYRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRV
                     YTKGLKEPGRYLTYRINKNITDPDTGKFLGQEVAFSGIVRSLDYTDSALEQRSKQAGE
                     RLKDNEYHTRTHPLITPLRTPSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEP
                     SRPVQAKIVSVFEGTRIAGQFQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFK
                     SRDTVELISTPAEEVGLAMVYRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQ
                     GRSRVKFGFNRSE"
     gene            6703..7206
                     /gene="def"
                     /locus_tag="ACFM5C_000461"
     CDS             6703..7206
                     /gene="def"
                     /locus_tag="ACFM5C_000461"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFC6068223.1"
                     /translation="MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRG
                     IGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT
                     RAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLK
                     KRQKHTI"
     gene            7293..8219
                     /gene="fmt"
                     /locus_tag="ACFM5C_000462"
     CDS             7293..8219
                     /gene="fmt"
                     /locus_tag="ACFM5C_000462"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFC6068224.1"
                     /translation="MKVIFAGTPDFAAAALKAVAAAGFEIPLVLTQPDRPKGRGMQLT
                     APPVKQAALELGLRVAQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
                     GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIQPTD
                     TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSES
                     AAVIERKIRAFNPVPAAWVEYQGNPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
                     ALKITELQPAGGRRMNIAAFAAGRHIEAGTKL"
     gene            8298..9557
                     /gene="rsmB"
                     /locus_tag="ACFM5C_000463"
     CDS             8298..9557
                     /gene="rsmB"
                     /locus_tag="ACFM5C_000463"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HFC6068225.1"
                     /translation="MSMALAQKLAADSIAAVAEGRNLQDVLAQIRTAHPDLMAQENGA
                     LQDIAYGCQRYLGSLKHMLAQMLKKPIGNPQLESLLLAALYQLHYTRNAPHAVVNEAV
                     ESIAKIGRGQYRSFANAVLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKH
                     WHNIAAALQSHPPMTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRL
                     PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
                     AGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDAILADVPCTASGVARRNPD
                     VKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHA
                     DAEPIESRVLLPNKHQDGFYYALIQKH"
     gene            9523..10122
                     /locus_tag="ACFM5C_000464"
     CDS             9523..10122
                     /locus_tag="ACFM5C_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HFC6068226.1"
                     /translation="MAFITRLFKSIKQWLVLLPMLSVLPDAAAEGIDVSRAEARITDG
                     GQLSISSRFQTELPDQLQQALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNID
                     YKLSFHPLTNRYRVTVGAFSTDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAE
                     IRLTLSTSKLPKPFQINALTSQNWHLDSGWKPLNIIGNK"
     gene            10122..12242
                     /locus_tag="ACFM5C_000465"
     CDS             10122..12242
                     /locus_tag="ACFM5C_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6068227.1"
                     /translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
                     LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPSVFLFGVSAQFINGTI
                     NSWFGNDTHEALERSLNLSKSALNLAADNALGNAVPVQIDLIGAASLPGDMGRVLEHY
                     AGSGFAQLALYNAASGKIEKSINPHKLDQPFPGKARWEKIQQAGSVRDLESIGGVLYA
                     QGWLLVGTYNGRDYALFFRQPIPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATL
                     LIASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTK
                     LFNHMTEQLSIAKEADERNRRREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAE
                     QILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKIL
                     LGKATILPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAER
                     LAWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALI
                     GDVLALYEAGPCRFAAELAGEPLMVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVK
                     SEVGRDGRIVLTVCDNGKGFGREMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRI
                     SLSNQDAGGACVRIILPKTVKTYA"
     gene            12235..13512
                     /locus_tag="ACFM5C_000466"
     CDS             12235..13512
                     /locus_tag="ACFM5C_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HFC6068228.1"
                     /translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
                     QARPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGALDF
                     LEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVEAAAKRTSPVF
                     LTGEVGSPFETVARYFHKNGTPWVSPARVEYLIDMPTELLQKAEGGVLYVGDIAQYSR
                     NIQTGIAFIIGKAERCRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
                     DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
                     EIGAGAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
                     VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
     gene            13603..14790
                     /gene="dprA"
                     /locus_tag="ACFM5C_000467"
     CDS             13603..14790
                     /gene="dprA"
                     /locus_tag="ACFM5C_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFC6068229.1"
                     /translation="MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQV
                     APAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
                     PPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGKSLGGQNIPVVSGMASGIDT
                     AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFP
                     RRNRLIAALSQVTLVVEAALESGSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIK
                     DGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGSRAVQTAYAPPPAAKMPSEG
                     AAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQR
                     IRT"
     gene            14816..15277
                     /locus_tag="ACFM5C_000468"
     CDS             14816..15277
                     /locus_tag="ACFM5C_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HFC6068230.1"
                     /translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
                     MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
                     ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
     gene            15349..17655
                     /gene="topA"
                     /locus_tag="ACFM5C_000469"
     CDS             15349..17655
                     /gene="topA"
                     /locus_tag="ACFM5C_000469"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFC6068231.1"
                     /translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
                     DPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
                     GLKNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
                     KLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
                     TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
                     SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
                     AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
                     VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
                     PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPFIKQVE
                     EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
                     AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCANYPKCKHVEPLEKPKD
                     TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAETCPKCAWPVLTIKT
                     TKRWGVEKVCPQKECGWKEQIEPPAPKE"
     gene            complement(17733..18002)
                     /locus_tag="ACFM5C_000470"
     CDS             complement(17733..18002)
                     /locus_tag="ACFM5C_000470"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HFC6068232.1"
                     /translation="MIASSEPFPCSACGLCCQKVNLSEQTIYLDRGDGTCRHFDDSTR
                     LCTIYETRPLVCRVEDYYHHYLSEQMSWQDFIQINIEVCKQFQSE"
     gene            complement(17999..18418)
                     /locus_tag="ACFM5C_000471"
     CDS             complement(17999..18418)
                     /locus_tag="ACFM5C_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068233.1"
                     /translation="MGKIQILNKLPTKNPATIPFDAASNSFFRILEARNEYKKIAAQE
                     KTKREVIGAWRDVRLAELKNQQEILRLYLENTFKERRKMIDGLFEALDKGMEAGNIHV
                     IDTAINGIVSIAKDSPLKQVDNLIAALKNDNVKVIDF"
     gene            complement(18418..19365)
                     /locus_tag="ACFM5C_000472"
     CDS             complement(18418..19365)
                     /locus_tag="ACFM5C_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068234.1"
                     /translation="MAIPVLLWGAAAALAATGIVKGAAALSDIDDAKEIGERAERRYK
                     RRKRELNSTKDETNLAFEELGQFKVDIFNNQIRHIVQVLNNTSNKHAKSELSGFNSTF
                     DIAELKEMETMVQTSLELSTNLGSSAITGALAGFGVYGAVPMIATASTGTAISTLSGA
                     AATNATLAWLGGGSLAAGGFGMAGGMVALGGIVAGPALAIGGFMLASKAEEALTEARA
                     YSAEIDEAIDEMDLITEGLEGLKENAREIRHTLEEMVKRFEKVRVDHADHPDFHTMLV
                     IGKAIKNLLNTPIMEEDGSPVANIRHQCEGCLNIELGTV"
     gene            19522..19899
                     /locus_tag="ACFM5C_000473"
     CDS             19522..19899
                     /locus_tag="ACFM5C_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiprotein-bridging factor 1 family protein"
                     /protein_id="HFC6068235.1"
                     /translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNI
                     PRLEQLAQIFKIDMWDLLKSGGGGMVFQINEGDSGGDIALYASGDVSMKIEFLKMELK
                     HCKEMLEQKDKEIELLRKLTETV"
     gene            19988..20557
                     /gene="rsmD"
                     /locus_tag="ACFM5C_000474"
     CDS             19988..20557
                     /gene="rsmD"
                     /locus_tag="ACFM5C_000474"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HFC6068236.1"
                     /translation="MAAGKHTKHSNQVRIIGGQCRGRKLSFASANGLRPTPDSVREKL
                     FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
                     QVQIVCSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRAFVYLEAGRL
                     PDIPDWLTEYREGKSGQSTFELRVFQVAE"
     gene            20680..20931
                     /locus_tag="ACFM5C_000475"
     CDS             20680..20931
                     /locus_tag="ACFM5C_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFC6068237.1"
                     /translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
                     YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
     gene            21028..21111
                     /locus_tag="ACFM5C_000476"
     tRNA            21028..21111
                     /locus_tag="ACFM5C_000476"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21062..21064,aa:Tyr,seq:gta)
     gene            21142..21215
                     /locus_tag="ACFM5C_000477"
     tRNA            21142..21215
                     /locus_tag="ACFM5C_000477"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21174..21176,aa:Gly,seq:tcc)
     gene            21225..21299
                     /locus_tag="ACFM5C_000478"
     tRNA            21225..21299
                     /locus_tag="ACFM5C_000478"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21257..21259,aa:Thr,seq:ggt)
     gene            21348..>21469
                     /locus_tag="ACFM5C_000479"
     CDS             21348..>21469
                     /locus_tag="ACFM5C_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6068238.1"
                     /translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFG"
BASE COUNT         5344 a         5500 c         5800 g         4825 t
ORIGIN      
        1 aagtgaatgg gtttcgtact atttgtactg tctgcggctt cgtcgccttg tcctgattac
       61 tatataaaat aaatgggcaa aaatcggttt attatcgttt ttgccgcatt tggatttgtt
      121 ctaccgtaaa acgtgtttga cgaacgggat tcttattaaa aaacatctga tttctaacaa
      181 aatcagtatt ttttggcacg atggctaaaa tttttccttc catttcgcca tcacgtgttt
      241 tccatgcgct caagaattgt gatttgctca ttgagacgtg ccccagcgat ggatcagcca
      301 gcaaaacagt ttctccgtta ataccgttca ataccgaaaa atggttgttt ttacggtatt
      361 ttaaatacac aattacagga atttttagtt gtaccaactg ttcaaatggc aaagcataac
      421 cttgtgcttc aaaacccagt tcgggcatta tgcgttgcat atcatcaaaa gaagcacgca
      481 tttgggtttt atccattttg tctaagattt ccgcttcaga ataatgtctg ccataaaaat
      541 tattcagtaa cgtggcaatc gaagccgcgc cgcaagaaaa atccaaatct tgttttacta
      601 tgccggaatc tcgccgtgct ttccaacttc gtacatggat gttttggtaa gaagcggggg
      661 gtcaacaaac ataggccaag caaaaactat atttggggcg aaaccaatca aagccgcata
      721 atttatcaat ttataaagat tttttatcat aatatgtata cgcggaataa acgcatgaaa
      781 cataaaaaaa taaaatcata tgcaatttta ttgcatgaat aaatatgaat aaaatagata
      841 atgatgggag taaatacgcc atgtattttg gaagtttaaa tttattaata ataaaataat
      901 ttatcgtagc gcaaataaat cccaaaattg gaacgattag aaaaaaaatt aatacaccca
      961 tcatcatgca aactctatat taagaaatag ctaactaatg ctattgtgga aattagttag
     1021 ctaactaaaa gttattaatg attattttcg agaattgact gcattattag cagcattggc
     1081 accaaaacct agtgcatgaa tacccggtct ccatgccaaa ttcccagcca atccgcctcc
     1141 ggcagcagca gccagccctg ttgccgctac tcctgttgcc gcaccgattc ctgccgcagt
     1201 agccgcgcct tgcgcagttc ctaatttacc atgattatac aaattagcac catgataccc
     1261 ccatgtacct aatgcaccgc caaaagcagc ggctgcaata atgggaacaa attcaccttg
     1321 tgtttctttc atttcagcct gtgataattg aattgctttc acattttggc tgtcaaaaac
     1381 ttggctgtct aaattttgcg ccattacagg tgtaatcatc atagccatta cagttgcaat
     1441 tttcgttgcg ctggtttgca cataaatagg attagcaaat tcgctttgat tgcgttcagt
     1501 gttgatgtag ctaatactgc tttctagttt gaatttaccc ttgtcagtca ataattcttc
     1561 caaacttaaa ggtaagtcag cataagcaat ttggctggca acagtcaaaa taaaatctat
     1621 tagacatttg tgtttttgca tcatttcgtt tgattttcta gtttttgaga atgatacaaa
     1681 gttttttaca aagtaaagag tcactctgaa aaacattttt tcattataaa tcaaaatatt
     1741 gatagaataa atagcgagca tcgattcacg gtgtacttta gtgcaaagcg tacaacgcga
     1801 gcctgaacca ccagccgcaa caggaaaaga aagccgatag agtgcaatgc ttgccaacgt
     1861 gcaagcgagc ttgcaagaac gcttggctca acgagagcag gcaagacaga aagcagaaag
     1921 caggatagga gcggtaacgc aaaggtctcg ggctttgatt tcgccgtaaa ccctgctgcc
     1981 gccttgtccg gaaagggtgc aggcggcgag tgccgacagg gtgcagatgg ggaggggggt
     2041 tttcatttgg ggtcgcaacg gaagtggtat gcgcagattt caaaaccgtt tttgaaatac
     2101 aggcggtgcg cgtcggcacg gtcgtggttg acgtggacgt tgaggtggat tttggttacc
     2161 cctgtttccg cgccgatttt gcggacttct tccaaaaggc gcgaggcgta gcctttgcgg
     2221 cggctttgcg gcagggtaac gatgtcatcg atgtggatgt ggcggccgcc ggcgagggtg
     2281 caggcttcgc ggaagccgca gacggcgacg gcgttgtgtt tgccttcttc aaaaatgccc
     2341 agcaggcggt agccttgggg gcgttggact ttgttgatct gttcggtaaa gcggttgatg
     2401 tcggtcaggg cggaacgcaa aacgctcaag gctgcaaagg cggtggcggt gtcgtccgcg
     2461 ccgatttcgc gcaaaacgta ggatgcgccc gagacggtct gttcctgtgc tttctcggcg
     2521 gcgtgttttt cttcgattgc ctgtgccagc aggacgcgct cgtcggtagg gtcgttttgt
     2581 ccgccctgtt cgcgttcttc gagcagggct ttgcagtcga tgacgcgcag gtcgttgtcg
     2641 gcggcaaagt ccatcaggaa gcggaacatc tgggggttgt cggtttccag ttttttatcg
     2701 acggcgacgc agcggatgtt gtccaccagc atggggcgca cccatttcga gtaggaaagc
     2761 ctgttgtctt tggtaaacga ggacagaatg ccgcacaggc gttccgccca gtcgctggga
     2821 cggaaaatct tgccggaact cgttgtgccg tggatgacga cttcgtaggg gttgcagact
     2881 aacatggcgg cttcctgaaa agaaatgtct ggcgcgatta tacctgatgc ttatgcgggc
     2941 gtgtttggat atgccgtctg aaaagtacgg gattcgtgcg gtaaaacttt gcggcggcaa
     3001 atgtgcgata atacgcgccg tattgccgct tttgcgaagc tgttccgcaa acactcgggc
     3061 ggcgtggacg tataaccgga tgcccgcctg acgcgggttt tttacggaag gggggcaaaa
     3121 atgcctaatc cgctttacag acagcacatc atctccattt cggatttgtc gcgcgaacag
     3181 ttggaatgcc tgcttcagac ggcattgaag ctgaaggcgc atccgcgcgg cgatttgttg
     3241 gaaggcaaac ttatcggttc gtgctttttc gagccgtcca cgcgcacgag gctgtcgttt
     3301 gaaacggcgg tgcagcggct gggcggcaag gtcatcggct tttcggacgg cgcgaatacc
     3361 agtgccaaaa aaggcgagac gcttgccgat accgcccgca tcatttccgg ctacaccgac
     3421 gcaatcatcc aacgccaccc caaagacggc gcggcgcgcg tggcggcgga gttttcgcgc
     3481 gtccccgtca tcaacgccgg cgacggcacg aaccagcatc ccagccagac tttgttggat
     3541 ctggtaacga tttatgaaac gcaggggcgt ttggacaagc tcaaaatcgc catggcgggc
     3601 gacttgaaat acgggcgcac cgtgcattcg ctttgtcagg cgttgaaacg ctggggctgc
     3661 gaatttgcct ttgtttcgcc gcccagcctc gcgatgcccg actacattac cgaagagttg
     3721 gacgaagccg gctgccgata ccgtatcctc ggcagtttgg aagaggcggc ggaatgggcg
     3781 gacatcctgt atatgacccg cgtccagcgc gaacgtttcg atgaacagga atttgccaaa
     3841 atccaaggca aattcaacct cgaagcgtct atgctcgccc acgccaaacc gaacctgcgc
     3901 gtgctgcacc ctttgccgcg cgtggacgaa atccatcccg atgtcgatgc cacgccgcat
     3961 gcctattatt tcgagcaggc aaccaacggc gtttatgcgc gtatggcgat attgtcgctg
     4021 gtgttgaacg aagaagtgtg aggaaccgat atggaaaccc cgaaactcag tgtcgaagcc
     4081 attgaaaaag gtacggttat cgaccatatt cccgctggca gggggctgac catcctgcgc
     4141 cagttcaaac ttttgcacta cggcaacgca gtaaccgtgg gcttcaacct gcccagcaaa
     4201 acccaaggca gcaaagacat catcaaaatc aaaggcgtgt gcttggacga caaagccgcc
     4261 gaccgccttg ccctgtttgc acccgaagca gtggtcaaca ccatcgacaa tttcaaggtt
     4321 gtgcagaaac ggcatttgaa cctgcccgac gaaatcgccg aagtgttccg ctgtccgaac
     4381 acgaattgcg ccggccacgg cgagccggtc aaaagccggt tttatgttaa aaaacacaac
     4441 gggcagacgc ggctgaaatg ccattactgc gaaaaaacct acagccggga ttcggtggcg
     4501 gaagcctgac ggattccctt aaaccgagcg ggcggcattt cgtctgccgc ttgttttgcc
     4561 aatctgaaat ggaatgatga tgcacgcttc tgtccaaagc cgtttcgcac cgatacttta
     4621 tgttttgatt ttctttgccg gttttttgac cgcgcaaatc tggttcaatc agaaagccta
     4681 tactgaagag ctgcctccgc ttctgtccgc attgtccgct gtcgcgctgg tgtggctggc
     4741 gtgggcgttc gtgtcggcgc gttcaaaggc taaggcggaa aagttctacc gcgaaaaaat
     4801 gatacagaac gaaagcatac accccgtcct gcacgcttct ttgcaacact tggaacacaa
     4861 gccgcaaatg ctcgccctgc tggtcaaaaa ccacggcaaa gggatggcgg aacaggtcag
     4921 gttcaaggcg gaagtgctgc ccgacgacga agacgcgcgc acgattgccg ccgagttggc
     4981 aaaaatggat atgtttgcat tggggacgga cgcggtcgcc tcgggcgaaa cctatggacg
     5041 cgtgttcgcc gatattttcg agttgtcggc ggctttggaa gggcgcgcgt tcaaaggaat
     5101 gttgaaactg acggcggaat ataaaaacat cttcggcgat gcctgccgtt cggaaacggc
     5161 gttggagttg ggcgcgctca atcaggcgtt gcaggagatt tcaaaaacat cggaaaagtc
     5221 caaacggata ttttattgaa gatggaaaaa tgccgtctga aacggaaggt gtttcagacg
     5281 gcatttttgt cggatgatta attattcgga gcggttgaag ccaaacttca cgcggctgcg
     5341 gccctgatcc ggtatattgt ccaaatcgcg tcccggattg gcggcggtgt cgcctacgga
     5401 aatatcggag atgttttcca aaatgatggc ggacgacagg tgttcggagg tgcggtaaac
     5461 cattgccaag cccacttctt cggcaggagt ggaaatcagc tcgacggtat ccctgctttt
     5521 gaaattgttg gagaggtcga cctgcatcgt tttcttgcgt ttgtagaggc tcaaaaccgt
     5581 gcctttgtcc aaaccgtccg cctcgccttt gtcgatggtg atggtttgaa actggccggc
     5641 aatccttgtg ccttcaaaca cggaaacgat tttagcctga accgggcggg acggttcgtg
     5701 cggcatcatg ttgaagcggt cggtgtcttc cggcattttc atcaggtagt cgccctgctg
     5761 tatttcggaa atggcggttt cgaccaccag cggctgtatc gaaggggtgc gcagcggggt
     5821 aatcaaagga tgggtgcggg tatggtattc gttgtctttc agccgttctc cagcctgttt
     5881 cgagcgttgt tcgagggcgg agtcggtata gtcgagggag cgcacgatgc cgctgaatgc
     5941 gacttcctgc ccgaggaatt tacccgtatc cggatcggtg atgtttttat tgattcggta
     6001 ggtcaggtag cggcccggct ctttcaggcc tttggtgtaa accctggtgc ctttggtgta
     6061 cagcagcctg ccttccgggc ccgagagcag gcgcggcgcg gcagcggttt ctttgcggga
     6121 aacgatttgc ggatgccgca taaagatgcg gtagaagttg acatcgatgg cgggaatacc
     6181 gtatccggac acttccttat ccggactcat tttgacgacg gggatgccgt ctgtctgttc
     6241 caagccgagg cgcggttcgc cgtcaacgtg gcgcaacacc aatacctggt ccggataaat
     6301 caggtcggga ttgtggattt gatcccggtt cgcgtcccac aggcggctcc attgccacgg
     6361 gctgtacagg tatttgcccg aaatgcccca cagggtgtcg ccctgtttga ccgtgtagcg
     6421 ttccggcgcg ttcgggcgca cctccaaatt tgccgccaaa gtttgtgttg agaatgccat
     6481 acctgccgcg cagagcaggg ttataatacg acgttgcata accgttcccc ttatctgata
     6541 aatttcggtt tgtcttgctt gattgggttg gaaaaagcgg cggcagcccc tcgggatgtg
     6601 ccgcgtgata aaaaatgttc cgcattttaa catcgaatta tccgcaccat cacggtaatt
     6661 atgaaaaaca ggcggcgtat ccgccgaagg aaagagaaaa ttatggcttt attgaatatc
     6721 ttgcaatatc ccgacgagcg tctgcacacg gtggcaaagc ctgtcgaaca agtcgacgag
     6781 cgcatccgga agctgattgc cgatatgttt gaaacgatgt acgaatcgcg cggcatcggg
     6841 ctggcggcga cgcaggtcga tgtgcacgag cgcgtggtcg tgatggattt gaccgaagac
     6901 cgcagcgaac cgcgcgtgtt catcaacccc gtcatcgttg aaaaagacgg cgaaaccact
     6961 tacgaagagg gctgcctgtc cgtgccgggc atttacgaca ccgtaacccg cgccgaacgc
     7021 gtcaaggtcg aggctttgaa cgaaaaaggc gaaaagttca cgctggaggc ggacggcttg
     7081 ctggcgattt gcgtgcagca cgagttggac cacctgatgg gcatcgtgtt tgtcgaacgc
     7141 ctgtcgcagc tcaagcaggg acgcatcaaa accaagctga aaaaacgtca gaaacatacg
     7201 atttgaccct tttgccgtgc cgtctgaacg ctgcaaagtt ttcagacggc acggtcttgt
     7261 ccgacaacct tacgcatacg caggaatatg ctatgaaagt catctttgcc ggcacgcccg
     7321 attttgccgc cgccgcctta aaagccgttg ccgccgccgg ttttgaaatc ccgctggtgc
     7381 tgacccagcc cgaccgtccg aaagggcgcg gtatgcaact gaccgccccg cccgtcaaac
     7441 aagccgcgct ggaactcggt ttgcgcgtgg cacagcccga aaaactgcgt aacaacgccg
     7501 aagccctgca aatgctcaaa gaggtcgagg cagacgtaat ggtggttgcc gcctacggtt
     7561 tgattctgcc gcaggaagtg ttggatacgc cgaaacacgg ctgcctcaac atccacgctt
     7621 cgctgttacc ccgttggcgt ggcgcggcgc cgattcaacg cgcgattgaa gccggcgatg
     7681 ccgagacagg cgtgtgtatt atgcagatgg acatcggttt ggacaccggc gatgtggtca
     7741 gcgaacaccg ctacgccatc caaccgaccg ataccgccaa cgaagtccac gacgcgctga
     7801 tggaaatcgg tgcggcggcg gttgttgccg atttgcaaca gcttcaaagc aaaggccgtc
     7861 tgaacgcggt caaacagccc gaagaaggtg ttacttacgc ccaaaaacta agcaaagaag
     7921 aggcgcgtat cgattggagc gaaagcgcgg cggttatcga acgcaaaatc cgcgccttca
     7981 accccgtgcc tgccgcgtgg gttgagtatc agggcaatcc gatgaaaatc cggcgggcgg
     8041 aagtggtggc gcaacaaggc gcggcaggcg aagtgttgtc ctgttcggcg gacggtttgg
     8101 tcgttgcctg cggcgaaaac gcgctgaaga ttaccgaatt gcagcctgcc ggcggcaggc
     8161 gtatgaatat cgcggcgttt gcggcgggac ggcatatcga agcagggacg aagctgtaaa
     8221 tcccttcaga cggcattccg atccgcaaac gggaatgccg tctgaaacca tcagttgaag
     8281 aaagcgaatc acataatatg agtatggcac ttgcccaaaa acttgccgcc gacagcattg
     8341 cggcggttgc cgaaggacgc aaccttcagg acgtgttggc gcaaatccgc accgcgcatc
     8401 ccgaccttat ggcgcaggaa aacggcgcgt tgcaggacat cgcctacggc tgccagcgtt
     8461 atttgggcag tttgaaacat atgctcgcgc agatgctgaa aaagccgatt ggcaatccgc
     8521 agctcgaaag cctgcttttg gcggcgttgt accagctgca ttacacgcgc aacgcgcccc
     8581 acgccgtggt caatgaggcg gtggaaagca tcgcgaaaat cggacgcggg cagtaccgtt
     8641 cgtttgccaa cgcggttttg cgccgctttt tgcgcgaacg cgacaagctt gtggcttcct
     8701 gtaaaaaaga cgatgtagcg aaacacaacc tgccgctgtg gtgggtggct tacttgaaaa
     8761 accattatcc gaaacactgg cacaacatcg ccgccgcgct gcaatcccat ccgccgatga
     8821 ctttgcgcgt caaccgccga cacggcaatg ccgaaagcta tttggaaaaa ctggtggcgg
     8881 aaggtatcgc ggctaaggcg ttggacgaat atgcggttac gttggaagaa gccgtgccgg
     8941 tgaaccgcct gcctggtttt tcagacggca ttgtttcggt acaggacttc ggcgcgcagc
     9001 aggcggcgta tcttcttaac ccgaaagacg gcgaacggat tttggacgcg tgcgccgcgc
     9061 cgggcggcaa gacggggcat atcttggaac tggcggattg ccgcgttacc gccttggaca
     9121 tcgatgcagg ccgtctgaag cgtgtggagg acaatatcgc gcgcctgggc tttcagacgg
     9181 catcggcggc gtgtgccgat gcgcgggatt tggcggcgtg gtatgatgga aagcctttcg
     9241 acgcaatcct tgccgacgtg ccatgcaccg cttccggcgt ggcgcggcgc aatcccgacg
     9301 tgaaatggct gcgccgtccg accgacgcgc tcaaaaccgc ccgccagcag gaagccctgc
     9361 tggacgcact ttggcagacg ctgaaacagg gcggcagaat gctgcttgcc acctgttccg
     9421 tgttcgtcga agaaaacgac gggcaattgc aaaaattcct caaccgccat gccgatgccg
     9481 aaccgatcga atcgcgggtg cttttaccga acaaacacca agatggcttt tattacgcgc
     9541 ttattcaaaa gcattaaaca atggcttgtg ctgctgccga tgctttccgt tttgccggac
     9601 gcggcggcgg aggggataga tgtgagccgc gccgaagcga ggataaccga cggcgggcag
     9661 ctttccatca gcagccgctt ccaaaccgag ctgcccgacc agctccaaca ggcgttgcgc
     9721 cggggcgtgc cgctcaactt taccttaagc tggcagcttt ccgccccgat aatcgcttct
     9781 tatcggttta aattggggca actgattggc gatgacgaca atattgacta caaactgagt
     9841 ttccatccgc tgaccaaccg ctaccgcgtt accgtcggcg cgttttcgac agactacgac
     9901 accttggatg cggcattgcg cgcgaccggc gcggttgcca actggaaagt cctgaacaaa
     9961 ggcgcgctgt ccggcgcgga agcaggggaa accaaggcgg aaatccgcct gacgctgtcc
    10021 acttcaaaac tgcccaagcc ttttcaaatc aatgcattga cttctcaaaa ctggcatttg
    10081 gattcgggtt ggaaacctct aaacatcatc gggaacaaat aatgcgccgt tttctaccga
    10141 tcgcagccat atgcgccgtc gtcctgttgt acggactgac ggcggcaacc ggcagcacca
    10201 gttcgctggc ggattatttc tggtggattg ttgcgttcag cgcaatgctg ctgctggtgt
    10261 tgtccgccgt tttggcacgt tatgtcatat tgctgttgaa agacaggcgc gacggcgtat
    10321 tcggttcgca gattgccaaa cgcctttctg ggatgtttac gctggttgcc gtactgccca
    10381 gcgtgtttct gttcggcgtt tccgcacagt ttatcaacgg cacgattaat tcgtggttcg
    10441 gcaacgatac ccacgaggcg cttgaacgca gcctcaattt gagcaagtcc gcattgaatt
    10501 tggcggcaga caacgccctc ggcaacgccg tccccgtgca gatagacctc atcggcgcgg
    10561 cttccctgcc cggggatatg ggcagggtgc tggaacatta cgccggcagc ggttttgccc
    10621 agcttgccct gtacaatgcc gcaagcggca aaatcgaaaa aagcatcaac ccgcacaagc
    10681 tcgatcagcc gtttccaggt aaggcgcgtt gggaaaaaat ccaacaggcg ggttcggtca
    10741 gggatttgga aagcataggc ggcgtattgt acgcgcaggg ctggctgctg gtgggtacat
    10801 acaacggacg cgattacgcg ctgttttttc gtcagcccat tcccaaaggc gtggcagagg
    10861 atgccgtctt aatcgaaaag gcaagggcga aatatgctga gttgagttac agcaaaaaag
    10921 gtttgcagac ctttttcctg gcaaccctgc tgattgcctc gctgctgtcg atttttcttg
    10981 cactggtcat ggcactgtat ttcgcccgcc gtttcgtcga acccgtccta tcgcttgccg
    11041 agggggcgaa ggcggtggcg caaggcgatt tcagccaaac ccgtcctgtt ttacgcaatg
    11101 acgagttcgg gcgtttgacc aagttgttca accacatgac cgagcagctt tccatcgcca
    11161 aagaagcaga cgagcgcaac cgccggcgcg aggaagccgc cagacattat cttgaatgcg
    11221 tgttggaggg gctgaccacg ggcgtggtgg tgtttgacga acaaggctgt ctgaaaacct
    11281 tcaacaaagc ggcggaacag attttgggga tgccgcttac ccccctgtgg ggcagcagcc
    11341 ggcacggttg gcacggcgtt tcggcgcagc agtccctgct tgccgaagtg tttgccgcca
    11401 tcggcgcagc ggcaggtacg gacaaaccgg tccatgtgaa atatgccgcg ccggacgatg
    11461 ccaaaatcct gctgggcaag gcaaccatcc tgcccgaaga caacggcaac ggcgtggtaa
    11521 tggtgattga cgacatcacc gttttgatac acgcgcaaaa agaagccgcg tggggcgaag
    11581 tggcaaaacg gctggcacac gaaatccgca atccgctcac gcccatccag ctttccgccg
    11641 aacgtctggc gtggaaattg ggcgggaagc tggatgagca ggatgcacaa atcctgacgc
    11701 gttcgaccga caccatcgtc aaacaggtgg cggcattgaa ggaaatggtc gaagcattcc
    11761 gcaattatgc gcgttcccct tcgctcaaat tggaaaatca ggatttgaac gccttaatcg
    11821 gcgatgtgtt ggcattgtat gaagccggtc cgtgccggtt tgcggcggag cttgccggcg
    11881 aaccgctgat ggtggcggcg gatacgaccg ccatgcggca ggtgctgcac aatattttca
    11941 aaaatgccgc cgaagcggcg gaagaagccg atgtacccga agtcagggta aaatcggaag
    12001 tggggcggga cggtcggatt gtcctgacgg tttgcgacaa cggcaaaggg ttcggcaggg
    12061 aaatgctgca caacgccttc gagccgtatg taacggacaa accggcggga acgggattgg
    12121 gtctgcccgt ggtgaaaaaa atcattgaag aacacggcgg ccgcatcagc ctgagcaatc
    12181 aggatgcggg tggggcgtgt gtcagaatca tcttgccaaa aacggtaaaa acttatgcgt
    12241 agcagcgata ttttaattgt agacgacgaa atcggcatcc gcgacctgct gtcggaaatc
    12301 ctgcaggacg aaggttattc ggtcgcattg gcggaaaacg ccgaagaggc gcgcaagctg
    12361 cgccatcagg cgcgtccggc gatggtgctg ctggatattt ggatgcccga ttgcgacggc
    12421 atcacccttt tgaaggagtg ggcgaaaaac gggcagctta atatgccggt cgtcatgatg
    12481 agcgggcatg ccagcattga cacagcagtg gaagccacca aaatcggtgc gctcgacttt
    12541 ttggaaaaac cgatctccct gcaaaaactg ctgtctgccg tcgaaaacgc gttgaagtac
    12601 ggtgcggcgc aaaccgaaac ggggcctgta ttcgacaagc tgggcaacag tgcggcgatt
    12661 caggagatga accgcgaagt cgaagcggcg gcaaagcgca cgtcccctgt atttttgacg
    12721 ggtgaggtgg gttcgccgtt tgaaaccgta gcgcgctatt tccataaaaa cggtacgccg
    12781 tgggtcagtc cggcaagggt cgaatatctg atcgatatgc cgacggaact gttgcagaaa
    12841 gctgaaggcg gtgttttata tgtgggcgat attgcccaat acagccgcaa tatccaaacc
    12901 ggcattgcct ttatcatcgg caaggcagaa cgctgccgcg tcagggtggt cgcatcgggc
    12961 agcagggcgg caggttcaga cggcattgcc tgcgaggaaa agctggcgga actgctgtcg
    13021 gaatcggtcg tccgtattcc gccgctgcgt atgcagcatg aagacattcc cttcctgata
    13081 caggggattg cctgcaatgt ggcggaaagc caaaagattg cgcctgcctc attcagtgaa
    13141 gaggcacttg ccgcattgac ccgttacgac tggccgggaa atttcgacca actgcaaagc
    13201 gtcgttgcaa cgctgttgtt ggaggcggac ggacaggaaa tcggcgcagg ggcggtttct
    13261 tcccttttgg ggcagaatgt gcctgccgag ggagcggaag atatggtggg cgggtttaat
    13321 ttcaacctgc ccctgcgcga attgagggag gaggtggagc ggcgttattt cgagtaccac
    13381 atcgcccaag aaggtcagaa tatgagcaaa gtggcgcaga aagtcggttt ggaacgcacg
    13441 cacctttacc gcaaactcaa acagctcggc atcggcgttt cgcgccgggc gggggaaaaa
    13501 accgaagaat aggcccggac ggccggtttt ccggctgcgg gcttttgttt tcagacggca
    13561 tttggtgcaa atgccgtctg aaatcgtaag gggacggatt ttatgacaga ggacgaacgt
    13621 ttcgcgtggc tgcaattggc gtttacgccc tatatcggcg cggaaagctt cctgctgctg
    13681 ctgcgccgtt tcggcagcgc gtcaaacgcc ctgtccgcac cggcggaaca ggtcgccccg
    13741 gcggtgcggc acaagcaggc ggccgaggct tggcgcaatg cggaaaaacg cgcctcggcg
    13801 cggcaggcgg cagaagcggc gttggaatgg gaaatgcggg acggatgccg tctgatgctg
    13861 cttcaggatg aagatttccc cgaaatgctg acgcaggggc tgaccgcgcc gccggttttg
    13921 tttttgcgcg gcaacgtgcg gctgctgcac aagccttccg ccgccatcgt cggcagccgc
    13981 catgccacgc cgcaggcgat gcggattgcc aaagatttcg gcaagtcgtt gggcgggcaa
    14041 aatatccccg ttgtgtcggg tatggcttcc ggtatcgata ctgccgccca tcagggcgca
    14101 ctggaggcag aaggcggcac catcgccgtg tgggggacgg gtatagaccg catttacccg
    14161 ccgtccaata aaaaccttgc ctatgaaatc gccgaaaaag gattgattgt cagcgagttt
    14221 cccatcggta cgcgcccgta tgccggcaac tttccgcgcc gcaaccgcct gattgccgcg
    14281 ctgtcgcagg ttacgctggt ggttgaagct gcgttggaat ccggttcgct gattaccgcc
    14341 ggcttggcgg cagaaatggg gcgcgaagtg atggcggtac ccggttcgat agacaatccg
    14401 cacagcaaag gctgccacaa actgattaaa gacggcgcga aattggtgga atgcctggac
    14461 gacatcctga acgaatgccc ggggctattg caaaatacgg gtgcttcatc atattctata
    14521 aataaggata cgcccgacac gggcagtcgc gccgttcaga cggcatacgc cccgccgcct
    14581 gccgcaaaaa tgccgtctga aggggcggca ggcggcacag ccgtcggcgg catactggat
    14641 aaaatgggtt tcgaccccat ccatcccgac gtgcttgccg gacagttggc tatgcctgcc
    14701 gcagatttgt atgccgcact gttggaattg gaattggacg gcagcgttgc cgcaatgccc
    14761 ggcggcagat accagcgtat ccgaacttga acgcacttta tattaaggaa cacgaatgac
    14821 cgaagtcatc gcctacctca tcgaacattt ccaagatttc gatacctgtc cgccgcccga
    14881 agacttgggt atgctgcttg aagaagcggg tttcgatacg atggaaatcg gcaacaccct
    14941 gatgatgatg gaagtattgc tcaacagctc cgaattttcc gccgaacctg ccgacagcgg
    15001 cgcattgcgc gtgtacagca aagaagaaac cgacaacctg ccgcaggaag tgatggggct
    15061 gatgcagtat ctgattgaag aaaaagccgt cagctgcgaa cagcgggaaa tcatcatcca
    15121 cgcgctcatg cacattccgg gcgacgaaat taccgtagat accgccaaag tgctgaccct
    15181 gctgctttta tgggcaaaca agagcgagct gcccgtgttg gtcggcgacg agctgatgag
    15241 cgcgctttta ctcgacaaca aacccacgat gaactgaagc ggcttcagac ggcccgcccg
    15301 agtccgtctg aaacgtcggc atcaaaacca ccatccagag aacgacaaat ggcgaaaaac
    15361 ctattaatcg tcgaatcccc gtccaaagcc aaaaccctga aaaaatattt gggcggcgat
    15421 tttgaaatcc ttgcatccta cggacacgtc cgcgacctcg tccccaaaag cggcgcggtc
    15481 gatcccgaca acggctttgc gatgaaatac caactcatca gccgcaacgg caaacacgtc
    15541 gatgccatcg tcgccggagc caaagaagcc gaaaacatct acctcgccac cgacccggat
    15601 agggaaggcg aagcgatttc ttggcatctt ttggaaatcc tcaaatccaa acgcggcctg
    15661 aaaaacatca agccgcagcg tgtcgtgttc cacgaaatca ccaaaaacgc cgtgctcgat
    15721 gccgttgccc atccgcgcga aatcgaaatg gacttggtcg atgcgcaaca agcccgtcgc
    15781 gctttggact atttggtcgg ctttaacctt tcgccattgt tatggaaaaa aatccgccgc
    15841 ggtttgagcg cgggtcgtgt gcaaagtccc gctttgcgcc tgatttgtga gcgtgaaaac
    15901 gaaatccgcg cgtttgaagc gcaggaatat tggacggtgc atctcgacag ccacaaaggc
    15961 cgcagcaagt ttaccgccaa actcgcccaa tacaacggcg cgaaactcga acaattcgac
    16021 ctgccgaacg aagccgcgca agccgacgtg ttgaaagaac tcgaaggcaa agaggccgtc
    16081 gttaccgcca ttgaaaagaa aaagcgcagc cgcaatcccg ccgcgccgtt caccacttct
    16141 accatgcagc aggatgccgt gcgcaaactc ggcttcacca ccgaccgcac catgcgtacc
    16201 gcccaacagc tttatgaagg tatagacgta gggcagggcg cgatcggtct gattacctat
    16261 atgcgtaccg acagcgtgaa tttggcggat gaagccttaa ccgaaatccg ccattacatc
    16321 gaaaacaaaa tcggcaaaga atatctgccg agtgccgcca aacaatacaa aaccaaatcc
    16381 aaaaacgccc aagaagcgca cgaagccatc cgcccgactt ccgtgtaccg cacgcccgaa
    16441 agcgtcaaac ccttcctgag cgcagaccag ttcaaactct atcaaatgat ttggcagcgt
    16501 accgtcgcct gtcagatgac gcccgccaaa ttcgaccaaa ccaccgtcga tattaccgtc
    16561 ggcaaaggcg tattccgcgt aaccggacaa gtgcagactt tcgcaggctt cctcagcgtt
    16621 tacgaagaaa gcagcgacga tgaagaaggc gaagacagca aaaaactgcc cgaaatgagc
    16681 gaaggcgaca aattgcccgt ggacaaactc tacggcgaac aacactttac cactccgccg
    16741 ccacgctaca acgaagccac gctggttaaa gccctcgaag aatacggcat cggccgcccc
    16801 tcgacctacg ccagcatcat ctccacgctc aaagaccgcg aatacgttac ccttgagcaa
    16861 aaacgcttca tgcccaccga cacaggcgac atcgtcaata aattcctgac cgaacacttc
    16921 gcccaatacg tcgattacca cttcactgcc aaactcgaag accagcttga cgaaattgcc
    16981 gacggcaaac gccaatggat tcccttgatg gacaaattct ggaaaccgtt catcaaacaa
    17041 gtggaagaaa aagaaggcat cgaacgcgcc aaatttacca cgcaggaact tgacgaaacc
    17101 tgccccaaat gcggcgaaca caaactgcaa atcaagttcg gcaaaatggg tcgcttcgtt
    17161 gcctgcgccg gttatccaga gtgcagctac acccgcaacg tcaacgaaac tgccgaagaa
    17221 gccgccgagc gcatcgccaa agccgaagca gagcaagccg aacttgacgg gcgcgaatgc
    17281 cccaaatgcg gaggacggct ggtgtacaaa tacagccgaa ccggcagcaa attcatcggc
    17341 tgcgccaact atccgaaatg caaacacgtc gagccgttgg aaaaaccgaa agacaccggc
    17401 gtccaatgcc cgcaatgcaa aaaaggcaac ctcgtcgagc gcaaatcccg ctacggcaaa
    17461 ctgttttaca gttgcagcac ctatcccgac tgcaactacg ccacctggaa cccgcccgtt
    17521 gcagaaacct gtccaaaatg cgcgtggccg gttttgacca tcaaaaccac caaacgctgg
    17581 ggtgtggaaa aagtctgccc gcaaaaagaa tgcggctgga aagaacagat tgaaccgcct
    17641 gcaccgaaag agtgaagcgg ttggggttga gatgaaagaa aatgccgtct gaaaggggtt
    17701 tcagacggca ttttcttcat gtgaaaacaa acctactcag attgaaactg tttacacact
    17761 tctatattaa tctgtataaa gtcctgccac gacatttgtt ctgataagta atggtgataa
    17821 tagtcctcca cacgacagac caaagggcgc gtttcataga tagtgcataa gcgcgttgaa
    17881 tcatcgaaat ggcggcaggt accatctccc cgatccaggt atatggtttg ttcgcttaaa
    17941 ttgacctttt gacagcacaa accgcaagca gagcatggga agggttctga tgaggcaatc
    18001 aaaaatcgat tactttcaca ttgtcgtttt tcaaagctgc aatcagattg tccacctgtt
    18061 tcagtggaga atctttggca atgctcacaa tgccgttaat tgctgtatca atgacgtgga
    18121 tatttcccgc ttccattcct ttgtccaatg cctcaaataa accgtcaatc attttgcgac
    18181 gttctttgaa cgtattttcc agatacaagc gcaaaatttc ttgttggttt ttcaattctg
    18241 ctaatcggac atcacgccat gcaccaatga cttcacgttt ggttttctct tgtgcagcaa
    18301 ttttcttata ttcgttgcgt gcttctaaga tgcgaaaaaa cgaattagaa gctgcatcaa
    18361 acggaatggt tgctggattc tttgttggta gcttattaag gatttggatt tttcccatta
    18421 tactgtacct aattcgatat tcagacaacc ttcgcattga tgacggatat tggctacagg
    18481 agatccgtcc tcttccataa taggcgtatt cagcagattt ttaatcgcct tgccgatgac
    18541 cagcatggta tggaaatcag gatggtcggc atggtcgaca cgaacctttt cgaaacgttt
    18601 aaccatttct tctaaggtat ggcgtatttc ccttgcgttt tccttcaacc cttctaatcc
    18661 ttctgtaatt aaatccatct cgtcaatagc ctcatcgatt tcagcactat atgctcgtgc
    18721 ttccgtcagt gcctcttccg ccttgcttgc cagcataaat ccaccgattg ctaaagcagg
    18781 tcctgccacg atgccaccca aagccaccat gccgcctgcc ataccgaatc cacctgctgc
    18841 caatgagcca cctccgagcc aagcaagggt tgcattggtt gccgcagcac ctgaaagggt
    18901 ggagattgct gttcctgtgg aagcagttgc aatcataggt actgcaccgt atacgccaaa
    18961 gcctgccagt gcgccagtaa tggcactact gccgagattg gtgcttaact ctaaagaagt
    19021 ttgcaccata gtttccattt cttttaattc agcaatatca aatgtactgt taaaacccga
    19081 cagttcgctt ttcgcatgct tgttgctggt gttgtttagg acttgaacaa tatgtctgat
    19141 ttgattgtta aaaatatcaa ccttaaactg tcccagctcc tcaaaagcaa ggttggtttc
    19201 gtctttagtc gaattcaatt ctcttttcct gcgtttataa cggcgttctg cacgctcacc
    19261 tatttctttt gcatcatcta tatcgctgag tgcagctgct cctttgacaa tacctgttgc
    19321 agcaagggcg gcggctgcac cccaaagtaa aactggaata gccatgtgta atttcctaaa
    19381 gtgtataaaa agttaaaaat cttgaagttt caatgtgtat tgtaatttta aaattctatt
    19441 aaaaatacat ttgccattcc agcaaactaa agtttaaaat ctatccaaat aatttaacca
    19501 tctatacaga aagttcagct catggaaacc cacgaaaaaa tccgcctgat gcgcgaattg
    19561 aacaaatggt cgcaggagga tatggcggaa aagctggcga tgtcggcagg cgggtatgcc
    19621 aaaatcgaac ggggcgaaac gcagttgaat atcccgcgtt tggagcagtt ggctcagatt
    19681 ttcaaaatcg atatgtggga cttgctcaaa tcgggcggcg gcgggatggt gtttcagatt
    19741 aatgaaggtg atagtggtgg cgatattgcg ttgtatgcgt caggtgatgt ttcgatgaaa
    19801 atagaatttt taaaaatgga gttgaaacat tgtaaagaaa tgttggaaca aaaagacaaa
    19861 gaaatcgagt tgctccgcaa gctgaccgaa accgtttaaa cagatatgcc gtctgaaaaa
    19921 agttttcaga cggcatattc tttgacaggt cttgtataat accgtttgaa cttacaggtt
    19981 tttgattatg gcggcaggca aacataccaa acacagcaac caggtacgca ttatcggcgg
    20041 gcaatgtcgg ggcaggaaat tgagttttgc atccgccaac ggactgcgtc caacccccga
    20101 tagcgtgcgt gaaaagctgt ttaactggct gggacaggat ttgacgggta aaacggtttt
    20161 ggatctcttc ggaggcagcg gcgcactcgg tatagaagcc gcttcgcgca acgccaaacg
    20221 cgtgctgatt tcggataaca accgccaaac cgtgcagacc ttgcagaaaa acagtcgcga
    20281 actgggtttg gggcaggtgc aaatcgtctg ttcagacggc atcgcatatt tgaagaccgt
    20341 atccgaacag tttgatgtcg tctttctcga cccgccgttt gcatggcagg actggcaaat
    20401 cctgttcgat gccttgaagc cgtgcctgaa cccccgggca ttcgtctatc tcgaggcggg
    20461 taggctgccg gatatccccg attggctgac ggaatataga gaagggaaat cagggcagag
    20521 tacattcgaa ttaagggttt tccaagtggc tgaataatat gcgctttgat aatcatttcc
    20581 gagttgtaaa cattcgtttg caaccgtccg gttcaaaaaa accttgtgct ataatccgcg
    20641 cccgcccggt tttgataatt tagtggaaaa ggaaaagaaa tgtcgctttt tattaccgac
    20701 gagtgcatca actgcgacgt atgcgaaccc gaatgcccca atgatgccat ttcccaaggc
    20761 gaggaaattt acgaaatcaa ccccaacctc tgcacgcagt gcgtcggaca ctacgatgag
    20821 ccgcagtgcc agcaggtttg cccggtggac tgcatcctga ttgacgaaga acatcccgaa
    20881 acccatgacg agttgatggc gaaatacgaa aagattatcc agtttaaata aattcttttt
    20941 aaaacatcaa attatgtctg ttttgaaata aaatcaaaaa aaaacttgac ggaaaagcaa
    21001 gccgctaata aactaacgtt ctcttttgga gggattcccg agcggtcaaa gggggcagac
    21061 tgtaaatctg ttgcgaaagc ttcgaaggtt cgaatccttc tccctccacc aaaattctta
    21121 cttggggcag tagcgagtaa tgcgggtgta gctcaatggt agagcagaag ccttccaagc
    21181 ttacggtgag ggttcgattc ccttcacccg ctccaaacaa ttaggcccat gtagctcagg
    21241 ggtagagcac tcccttggta agggagaggc cggcagttca aatctgccca tgggcaccat
    21301 ctctcgatta ttcatttctt taaggcttag atatatagga tattgccatg gctaaggaaa
    21361 aattcgaacg tagcaaaccg cacgtaaacg ttggcaccat cggtcacgtt gaccatggta
    21421 aaaccaccct gactgccgct ttgactacta ttttggctaa aaaattcgg
//
LOCUS       DAXHNP010000017        20693 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.017, whole genome shotgun sequence.
ACCESSION   DAXHNP010000017 DAXHNP010000000
VERSION     DAXHNP010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20693
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.017"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(63..239)
                     /locus_tag="ACFM5C_000480"
     CDS             complement(63..239)
                     /locus_tag="ACFM5C_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068239.1"
                     /translation="MKSRRFFKALLLIAALVGAFYAGMQTQAYLYEDLCLDLGGGKNP
                     GSYPICVIGKVSAR"
     gene            complement(242..1600)
                     /gene="murF"
                     /locus_tag="ACFM5C_000481"
     CDS             complement(242..1600)
                     /gene="murF"
                     /locus_tag="ACFM5C_000481"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HFC6068240.1"
                     /translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALA
                     GGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF
                     VFGITGSVGKTTVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
                     IEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDG
                     MALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAV
                     VLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDD
                     TYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAY
                     FVGDNSVEAAEKFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALE
                     DK"
     gene            complement(1725..3371)
                     /locus_tag="ACFM5C_000482"
     CDS             complement(1725..3371)
                     /locus_tag="ACFM5C_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HFC6068241.1"
                     /translation="MKQSARIKNMDQTLKNTLGICALLAFCFGAAIASGYHLEYEYGY
                     RYSAVGALASVVFLLLLARGFPRVSSVVLLIYVGTTALYLPVGWLYGAPSYQIVGSIL
                     ESNPAEAREFVGNLPGSLYFVQALFFIFGLTVWRYCVSGGVFADVKNYKRRSKIWLTI
                     LLTLILSCAVMDKIASDKDLREPDAGLLLNIFDLYYDLASAPAQYVAKRAHILEAAKK
                     ASTWHIRHVAPKYKNYVVVIGESARSDYMNVYGFPLPDTPFLSQTKGLLINGYQSTAH
                     ATNLSLPQTLGLPGEPNNNIVSLAKQAGFRTAWLSNQGMLGHFANEISTYALRSDYPW
                     FTQRGDYGKSAGLSDRLLLPAFKRVLIGNAGTKPRLIVMHLMGSHSDFCTRLDKDARR
                     FQYQTEKISCYVSTIAQTDKFLEDTVKILNENKESWSLVYFSDHGLMHVGKGGERTLT
                     HGAWKRQSYGVPLVKISSDDTRREMIKVRRSAFNFLRGFGSWTGIETDELPDDGYDFW
                     GNVPDVPGEGNNLAFIDGLPDDPAPWYAGKGKSTKNTSKK"
     gene            complement(3394..4872)
                     /locus_tag="ACFM5C_000483"
     CDS             complement(3394..4872)
                     /locus_tag="ACFM5C_000483"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFC6068242.1"
                     /translation="MFSKLTPLAETGIPTLSCANAAGRLLHSDSRQIKQGDIFVACPG
                     EYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGILAAQVYGN
                     VSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAP
                     VDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEA
                     YGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDF
                     TASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIR
                     PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
                     KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVE
                     QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
     gene            complement(4897..6642)
                     /locus_tag="ACFM5C_000484"
     CDS             complement(4897..6642)
                     /locus_tag="ACFM5C_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFC6068243.1"
                     /translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIA
                     RGLYLQTVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKEM
                     KEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV
                     FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDRQGNIV
                     DSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
                     ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
                     QPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRM
                     HSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE
                     KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGR
                     YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGI
                     SPTKPLTAAAVKTPS"
     gene            complement(6703..6966)
                     /gene="ftsL"
                     /locus_tag="ACFM5C_000485"
     CDS             complement(6703..6966)
                     /gene="ftsL"
                     /locus_tag="ACFM5C_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HFC6068244.1"
                     /translation="MNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIALE
                     QDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVAHQR"
     gene            complement(6963..7949)
                     /gene="rsmH"
                     /locus_tag="ACFM5C_000486"
     CDS             complement(6963..7949)
                     /gene="rsmH"
                     /locus_tag="ACFM5C_000486"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFC6068245.1"
                     /translation="MSGAESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
                     SRLGDAGRLIVFDKDPQAIAVAEELARSDKRVGVVHGGFASFQTALDGLGIGKVDGAL
                     FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
                     ERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAIRIFINRE
                     LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
                     PEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERTAGPIPEQSQRKTSEWQ"
     gene            complement(7946..8401)
                     /gene="mraZ"
                     /locus_tag="ACFM5C_000487"
     CDS             complement(7946..8401)
                     /gene="mraZ"
                     /locus_tag="ACFM5C_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HFC6068246.1"
                     /translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
                     LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLLPAGLRKRV
                     DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPDELAFQLGQTDLQL"
     gene            8707..9897
                     /locus_tag="ACFM5C_000488"
     CDS             8707..9897
                     /locus_tag="ACFM5C_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6068247.1"
                     /translation="MSGNPINLHKLTLIMPLPLPSPEARQFSLKLQTLIAEKIGKHGN
                     WIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQLQELLSQT
                     AGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQARAPEASQKVV
                     HLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTYSARPLHDLQ
                     LSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLERGGMIFIDYGFDAAQYYHPQRN
                     QGTLIGHYRHHVIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLTGYLPQSHFLLNL
                     GITELLAQVGKTDSPAYIREAAAVQKLIDQHEMGELFKVIAFGKNIGVDWAGFRFGDI
                     CHKL"
     gene            10029..10105
                     /locus_tag="ACFM5C_000489"
     tRNA            10029..10105
                     /locus_tag="ACFM5C_000489"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10063..10065,aa:Met,seq:cat)
     gene            10113..10188
                     /locus_tag="ACFM5C_000490"
     tRNA            10113..10188
                     /locus_tag="ACFM5C_000490"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10146..10148,aa:Ala,seq:ggc)
     gene            complement(10479..11300)
                     /locus_tag="ACFM5C_000491"
     CDS             complement(10479..11300)
                     /locus_tag="ACFM5C_000491"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFC6068248.1"
                     /translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIDFHSNHK
                     VFEIAIQLGAVLAVVFEYRQRFSNVLHGVGKDRKANRFVLNLAIAFIPAAVMGLLFGK
                     QIKEHLFNPLSVAVMLVLGGFFILWVEKRQSRAEPKIADVDALRPIDALMIGVAQVFA
                     LVPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
                     LILIGFIAAFVSGLVAVKALLKFVSKKNYIPFAYYRIVFGIVIIILWLSGWISWE"
     gene            complement(11333..11977)
                     /locus_tag="ACFM5C_000492"
     CDS             complement(11333..11977)
                     /locus_tag="ACFM5C_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6068249.1"
                     /translation="MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIE
                     VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGL
                     KYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
                     LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK"
     gene            complement(11980..12825)
                     /gene="ftsN"
                     /locus_tag="ACFM5C_000493"
     CDS             complement(11980..12825)
                     /gene="ftsN"
                     /locus_tag="ACFM5C_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6068250.1"
                     /translation="MNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKIPV
                     PSKQPAETEILKPKNQPKEDIQPEPADQNALSEPDAATEAEQSDAEKAADKADEVEEK
                     AGEPEREEPDGQAVRKKVLTEEREQTVREKAQKKDAETVKKQAVKPSKETEKKAPKEE
                     KKAEKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTSDKAEATHYLQMGAYADRR
                     SAEGQRVKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKKHEVASLIR
                     SIESK"
     gene            complement(12931..14427)
                     /locus_tag="ACFM5C_000494"
     CDS             complement(12931..14427)
                     /locus_tag="ACFM5C_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFC6068251.1"
                     /translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKE
                     SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLA
                     EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
                     GEVAAHLNGIEPLVQTDCQVPQMPSENTKLLDLVDVKGQHTARLALEIAAAGGHSLLM
                     MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
                     AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
                     VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
                     SAAELMQQEAGESSVSVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEAL
                     GGLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
     gene            complement(14441..14761)
                     /locus_tag="ACFM5C_000495"
     CDS             complement(14441..14761)
                     /locus_tag="ACFM5C_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003763371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HFC6068252.1"
                     /translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
                     TREEFDIQQQVLIKTRTKLAALEARLAKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
                     EAGE"
     gene            15244..16770
                     /gene="putP"
                     /locus_tag="ACFM5C_000496"
     CDS             15244..16770
                     /gene="putP"
                     /locus_tag="ACFM5C_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFC6068253.1"
                     /translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
                     AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
                     NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
                     AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
                     NVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVSARRIG
                     MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
                     AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
                     SNPDSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWV
                     KKPAQAAGESGLLTMYEIVPGFIVCLIIAVLVSLFNKEPSREIQERFEKADADYRAAR
                     "
     gene            17019..20624
                     /gene="putA"
                     /locus_tag="ACFM5C_000497"
     CDS             17019..20624
                     /gene="putA"
                     /locus_tag="ACFM5C_000497"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HFC6068254.1"
                     /translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
                     ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
                     IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDRQMSSALSRLISKGGAPL
                     IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
                     RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRAQHGRVMGELLPRLKELFLL
                     GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
                     IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLS
                     AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
                     APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDTLIRSPFDTIAEQGIHLHNA
                     LPLPRDLYGKGRLNSQGVDFSNETVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
                     PIKNPADHGDVVGTVSFADAALTQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
                     HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPQDAKAVGAIVAISPW
                     NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHEAGIPTSALQLVLGAGD
                     VGAALTNDARIGGVIFTGSTEVARLINKALAKRNDNPVLIAETGGQNAMIVDSTALAE
                     QVCADVLNSAFDSAGQRCSALRILCVQEDVADRMLDMIKGAMDELVVGKPIQLTTDVG
                     PVIDAEAQQNLLNHINKMKGVAKSYHEVKTAADVDSEKSTFVRPILFELNNLNELQRE
                     VFGPVLHVVRYRADELDSVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
                     NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRAGEWVAPTLSQIGQADEAALKRL
                     EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
                     GSTVQAFAALTELAASGVQAVVEPDSPLASYTADLEGLLLVNGKPETVGISHVAALSP
                     LDSARKQELAAHDGALIRVLPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
BASE COUNT         4852 a         5963 c         5048 g         4830 t
ORIGIN      
        1 cgggcctgcg cccgtttgag gttggcttgc cgcccggcaa ggtttcggac ggcttttgca
       61 gattaacgtg cagagacttt cccaatcacg caaatcgggt aactccccgg atttttgccg
      121 ccacccaagt ctaaacataa atcttcataa agatacgcct gcgtctgcat tccggcataa
      181 aacgcgccga ccagcgcggc aatcaacaat aaggctttaa aaaaacgtcg acttttcatt
      241 ttcacttatc ctccaatgcc tcgaccactt cttccatctg cataaagcgc gaacctttca
      301 ccaacacggt ggcgcgttcg ggcaaatcgt ggcgcaacac ttgaatcaac gggtctttgg
      361 cggcgaacca caaaccgtcc gcgccaaatt tttccgccgc ttcgacgctg ttgtcgccga
      421 caaaataagc cgcttcgatg ccttggtcgc gagcatacgc gccgacttcg gcgtgcatgg
      481 cggcggcttc gtcctcaccc agttcgccca tatcgcccat cacgaaaata cgcggcgcag
      541 gcatacgcgc caacacgtca atcgcggctt tcatgctgtc agggttcgca ttataagtat
      601 cgtcaatcag ggttgcgccc ttgattccgg atttgacgtt cagacggcct ttgatattgc
      661 tgaagccttt caaaccttcc gccacatcgt tcaaactcaa acctgcagcc aaagacagcg
      721 cggcggcagc ggcggcgttg tggacattgt ggcggccggg aacaggcagc accacggcgg
      781 cgcgttcgtc gccgcacacc aaatcaaatt cgcacgacaa cggtttcagc acgatatttt
      841 ccgcgtggac atcgccgcta tcgatgccga aagtgcgcgt attcaaatta agcgttgccg
      901 ttttgaagac agccatattg gcatcttctt gaggaatcag tgccatgccg tctgaacata
      961 agccttgata aatctcgctt ttcgctttgg caatatcgcc cactccgtcg aaaccgcagc
     1021 cgacatgggc gcgcatggcg ttgttgacca atgcggcatc gggtttggcg atttgtgtca
     1081 aaaccgccag ttcgccaaaa tggttcatac ccatttcaat cacggcatag cggtgttttt
     1141 cgtttaattt caacaaagtc aacggcaatc cgatgtggtt gttgaagttg cctgccgtcg
     1201 ccaaaacggc attatcgccg aaacggcggc gcaataccgc agccagcatc tccttcaccg
     1261 tcgtcttgcc gaccgaaccg gtaatgccga acacaaacgg attcacattt tcacgccaca
     1321 cctttgccaa cgtttgcaat gcggcaagcg tgtcatcgac tttcaacgcg ccatccattg
     1381 caacgcaatc ttcgcgcgaa accacaaccg ccgccgcacc agcagccaat acgtcttcaa
     1441 caaaatcatg cgcatcaaac cgcccgcccg ccaatgcgaa aaacacatcg cccgcgcgga
     1501 tgtcgcggct gtcggttacg atgcgcgaca cgggtttgct ttcagacggc atcggaagct
     1561 tgagggcttg gcagatgaaa tttaggtcca gtggtttcat atttactttc gttaatattc
     1621 gggcggcgga cacatcggta gcggctgatt tttttatcgc ctgttttgct gtggtaaaac
     1681 acagattatt ttcccattct cattcggcat tttttctgta cgtatcattt tttagacgta
     1741 tttttagtcg atttgccttt tcccgcatac cacggcgcgg ggtcgtcggg cagtccgtcg
     1801 ataaaggcaa ggttattgcc ttcgcccggc acatcgggaa cattccccca aaaatcatag
     1861 ccgtcatcgg gcaactcgtc ggtttcgata cccgtccaac tgccgaatcc gcgtaaaaaa
     1921 ttaaacgcgc tgcgcctcac tttaatcatt tcgcgccgcg tgtcatcgga cgaaatttta
     1981 accagcggca cgccgtagct ttgacgcttc cacgcaccat gtgtcaacgt tcgctcgccg
     2041 cctttaccga catgcatcaa accgtggtcg gaaaagtaaa ccaaagacca gctttcttta
     2101 ttttcattca atatcttaac tgtatcttct aaaaatttat cggtttgcgc gatggtggaa
     2161 acatagcagg atattttttc agtttgatac tgaaaccgcc gcgcatcctt atccaaacgt
     2221 gtgcaaaaat cactgtgcga acccatcagg tgcatcacaa tcagccgagg cttcgtgcct
     2281 gcatttccta tcaaaacccg tttgaacgcc ggcaacaaaa ggcggtcgct caaccccgcg
     2341 cttttgccat aatcacccct ttgggtaaac cacggataat cgctgcgtag ggcataggtg
     2401 gaaatttcgt tggcaaaatg ccccaacatt ccttgattag acagccacgc cgtccgaaaa
     2461 cccgcctgct tcgccaagct gacgatgtta ttgttcggtt ctcccggcag ccccaaagtc
     2521 tgcggcagcg aaagattcgt cgcgtgggcg gtcgattggt aaccgtttat caacagccct
     2581 ttggtctgac tcaaaaaagg cgtatcgggc aatgggaaac cgtaaacatt catataatcc
     2641 gaacgcgcgc tctcaccgat aaccacaaca taatttttat acttgggcgc aacatgacgg
     2701 atatgccatg ttgacgcttt ttttgctgct tccaaaatgt gggcgcgctt ggcgacatat
     2761 tgtgccggcg cggaagccaa atcgtaatac aggtcgaaaa tattcaacaa caggccggca
     2821 tcaggttctc gcaaatcttt atcgctggcg attttatcca tcaccgcgca ggacaaaatc
     2881 aaagtcaata atatagtcag ccatattttg ctgcggcgtt tatagttttt tacgtcagca
     2941 aatacccccc ccgatacaca atatctccaa actgtcaagc caaaaatgaa aaataatgcc
     3001 tgcacaaaat aaagcgaccc gggaagattg ccgacaaatt cacgcgcctc ggcaggattg
     3061 ctttccaata tcgaaccgac tatctgataa gacggcgcac catacagcca gccgaccggc
     3121 aaatataggg cggttgtgcc gacgtaaatc agtaaaacaa ctgaagaaac gcgcgggaaa
     3181 ccgcgtgcca ataataataa aaatacaacc gaagccaaag cacccacggc agaataacgg
     3241 tagccgtatt catattccaa gtgataacct gatgcgatgg ccgcgccaaa acaaaaggct
     3301 aaaagcgcgc aaatgcccaa tgtatttttt aatgtctgat ccatattttt tattcgggcg
     3361 gattgtttca tacgatgccg tccgaatatc ccattattta cgagttaaca aagcctgtcc
     3421 gacgatttca agatcggaaa aacggtgctt cacgccttgt acatcctgat agttttcatg
     3481 ccctttgccg gcaatcagga tgatgtcgtt tgcggcggct tgttcaaccg cataacggat
     3541 ggcggcggca cggtcggctt cgacgcattc gggcgcggga acggcaggca ggatgtcgtt
     3601 gatgatgtcg tgcggatttt ccaagcgcgg gttgtcgctg gtgacgacga ctttatccgc
     3661 gccctgtacg gctgccgcgc ccatcagcgg gcgtttgccg cgatcgcggt taccgccgca
     3721 accgaatacg caccacaaag ccgcaccctg cggtttgatt tcctgcaagg tggcgagtgc
     3781 tttttccaat gcgtcgggcg tgtgggcata atcgacaaca accaaaggtt tgccgctgtt
     3841 cataatacaa tccatacggc ctgaagcagg acggattttt tccagtacat ccaatacctt
     3901 atccagcgga tagccgttgg cgcaaagcaa agcgacacag gcggcgagat tttgcgcgtt
     3961 gaaccgtccg agcaggcgcg tgtggcattt cccttcgccc cacggggttt ggaatacggc
     4021 ttctatgccg tctgaagagg cggtaaagtc ggtaatgcgg atgtcggcgt gttcgctgaa
     4081 gccgtaactg taaacggcca aatcggggca gtcttttttc agacgacctg cgagttccgc
     4141 gccgtattcg tcatctacat tgataacggc gtgtttcaag ccgtgccagt aaaacaggcg
     4201 cgacttgatg gcaccgtagg cttccatcgt gccgtggtag tcgaggtggt cgcgggtgag
     4261 gttggtaaag attgcgctgc ggaatgacac gccgttgacg cgcgactggt caagcccgtg
     4321 gctggagact tccatcgcgg cgactgttgc gccttgttga cggaaacggt agagcagggt
     4381 ttggacatcg acgggggcgg gtgtggtatg cgtggtttct tccaatgcac cccaaaagcc
     4441 gttgccgacc gtgccgacaa tggcggtttt ttcgcccaac aaatcggcag cttgcgccag
     4501 ccattgcgtg atggaggttt tgccgttggt tccggttacg ccccagactt tgagaccgtc
     4561 tgaaacgttg ccgtaaactt gcgccgccaa tatgccggca cggtgtttca aatctttgat
     4621 gccttgattg gggactttcc attcgggatt ccacgcgaat ttgccatcgt cgtcccaaaa
     4681 aacaaaagcc gcaccgttgg caacggcggc ggggatataa ctgcgtccgt cggcatattc
     4741 gcccggacag gcaacgaaaa tatcgccttg tttgatttgg cggctgtctg aatgcaacaa
     4801 acgccctgcc gcgtttgcac acgacagggt cgggatgccg gtttcagcca aaggggttaa
     4861 cttgctgaac ataaaacaat ctcgttgata ctcggattaa gacggtgttt tgacggctgc
     4921 ggcggtcagt ggcttggtcg gggaaatgcc caagatgttc aggctgccgc ccataatttt
     4981 tttgaagggc ggccctgcca ctacgccgcc gtaataaccg tgggcagtcg gttcgtcaat
     5041 ggttaccgcc acaatcacac gggggttttt ggcgggggca aaaccgataa aggtagcgat
     5101 gtgtttgttg tcggcataac gcccgttgac gaacttgcgc gccgtgccgg ttttcgcgcc
     5161 gacatcgaaa ccgtccaccg cacccgccgt accggtgccg cccggctcgg tcacggaaac
     5221 catcagattg cgtacctcgc gcgcggtcga ttctttgaat atgcgtttgc cttgcggcgc
     5281 aaccgcctgt ttttcaaagc tgaccggcag caaaacgccg tcgtgcgtca gtgcggtata
     5341 ggcgcgcgcc aattgcagca ggctcaattg caggccgtaa ccgaaagaca tcgtcgcctg
     5401 ttcgatgggc cgccacctgc gccaatttct caacaaacct gcagtttcgc ccggaaagcc
     5461 cgagtgcata cgcacaccga tgcccaactc atgatagaag tcatacattt cttcggcacc
     5521 gaaacgcgca gacagtttgc ttgtgccgac gttggacgat ttctgcatga tgccgcgcac
     5581 atccaaagag gggtaaacat gggtatcgcg cacgggagac ggtccgattt tataaggctg
     5641 cgtattcagc cgttcgttca aatcggtttt gcccgcatcc aatgctttcg caatcacaaa
     5701 cggtttgatt gccgaaccgg gttcgatcat atcggttacg gcacggttgc gccgctgttc
     5761 gctgtctgcc cggccgggcc tgttgggatc gtaggcgggc gtattggcca aggcgaggat
     5821 ttcccccgtg cgggcatcca aaaccaccac cgttccggct tttgcctgat ggtattcgac
     5881 cgccttgttc aactcttcat aggccaaggt ctgaatcctc tgatcgaggg aaaggatgat
     5941 gtctttgccg tttttcgggg ctttattgcg cggggagtcc aagctgtcca caatattgcc
     6001 ctgccggtcc cgcaaaacga cttccgcgcc gtcttcgcca tgcaggctgt cttcaagcga
     6061 aagttccaaa ccttcctgac ctttgccgtc aatatcggta aatccgatga cgtgtgcaaa
     6121 caggttgccc atcgggtaat ggcgttttaa ttctttttca aatacaaagt tttccaaacc
     6181 caaggctttg acctcttcgg caaccttggg atcgagctgc cgcttaatcc agataaacga
     6241 cttgcctttc tgttcgagct tgttcctcaa aacatcaacc ggcacatcga caagctcgga
     6301 caggcgttcc aattgtgcgg cagacggcat ttccttcatc tctttaggca cggcaaacag
     6361 ggactccgtc ggcgcactca acgccaaaac cgcaccgttc cggtccgaaa ccgtaccgcg
     6421 tgtagccggc aatgtttgag tccgcacaat ccggttgtcg ccctgttctt tcaaaaagtt
     6481 atacgttacc gtctgcagat acagtccgcg ggcaatcaga ccggcaaaca agaccgctat
     6541 tgccatcagg acgaagctga tccgtccgtt actggtcatc ggctttttga cctgctcttc
     6601 tttgggcagc atccggggct tatattcact cttaatcaac atttttactt ctcgttatta
     6661 ttatcctgac gcaggaatcc gattccggca cacaggctgc ttctatcttt gatgcgccac
     6721 cataaaggta ttgcccgaaa ccggcggatg gaggttttgt ttttctgccg ccgccctgat
     6781 cgcttcgtgg ttcgccaaac gcgcctgttg cagcctcatt tgcgcataat cctgctccaa
     6841 ggcgatttcc tgttttttcg ccttatccaa agctgtgaag ttgagcctgt actggttttg
     6901 ctgcatcaca acggaaaaag cggaaacgca caccgcaagc agcagaagga aattcaattt
     6961 gttcattgcc attcagacgt ttttctctgt gattgttccg gtatcggacc ggcagtccgc
     7021 tccgccacac gcaaaaccgc acttctcgcc ctcggattgg cggcaatttc cgcctcaccc
     7081 ggctttaatg ccctgcccgc gattttcagg ggcggctcgg gcaaatccgc ttccctgacc
     7141 gccgcccagc gcggcagggg cgcgtgttgc gaatattttt tgacaaactg cttcacaatg
     7201 cggtcttcca acgaatggaa agcaatgacc gccaaacgtc cgccctcttt cagacgacac
     7261 atgacctgcg gcaatactgc ccctacttct tcaagctcgc ggttaataaa gatgcggatt
     7321 gcctggaagg tgcgcgtcgc aggatcctgc ccccgctcgc gagtacggac gttttgtgcc
     7381 acgatctgcg ccagcttgcg ggttgtatcg attggacttt ccgcccgttg cgcaacaatg
     7441 gcgcgcgcaa tctggcggct aaaccgctct tcaccataat tcttgattac ctcgtgcaaa
     7501 tcctgttccg acgcaaccgc tatccactct gcggcagaca taccgcgcgt cgtatccata
     7561 cgcatatcca aaggggcatc gaaacggaag ctgaaaccgc ggctgccgtc atcgatttgc
     7621 ggggacgaaa tccccaaatc aaacagcgca ccgtccacct tgccgatacc caaaccgtcc
     7681 aatgccgtct gaaacgaagc aaaaccgcca tgcacgacac cgacccgttt gtccgaacgc
     7741 gccagctctt ctgccacagc aatcgcctgc ggatctttgt cgaaaacaat caaccgcccc
     7801 gcatcgccca aacgcgacaa aatcagccgg gaatgccctc ccctgccgaa cgtaccgtcc
     7861 acatagacac cgtcttcgcg cacggcaagc gcatccaccg cctcattcag caagaccgtg
     7921 atatgccggt aactttctgc tccactcaca attgcaaatc cgtctgaccc aactggaagg
     7981 caagttcgtc aggatcgtca tccaaagcct gaaccatctc agcctcccac tgctcgcgac
     8041 cccaaagctc caaacggttg gcacgaccga ccaaaacgac ttcacggtcg aaatccaccc
     8101 ttttcctcag tccggcagga agcagcaccc ggccggcgct gtcccattcc aaaatttccg
     8161 cgttatgcag caaaagattt tgaaaccgcc gcaaaacagg gttatccgcc acttttaagt
     8221 ttaaaagttg cgccgcaacc ttttcccact ccgcaacagg gtacatcaac agcttgtgtt
     8281 tcgactcgag cgttaccact acggcaggcg tatagaggcg cgacagaatg tcacggaatt
     8341 tggcaggaac agccaaccgc cccttactgt cgatgcttaa ttcgtgtgcg ccgccgaaca
     8401 tgacatgtcc caagccgaaa tcaaaatcac aagggtaaaa gagacacttt gccccacaat
     8461 tccccaccaa tcgacactat aagaaatttt aaacactcgg tcaaatcagg gcatgaaaac
     8521 tcattaacat atctgaaatt tttattcctt ttaaaaacaa taagataaaa aatgacgaca
     8581 acggcacggc gggtgcggta cagaataatc gaaccaataa acaactatat atgattaatt
     8641 taataatata aacacaatat atagtattaa gataaagcca tgacagcacc cgtaccaacg
     8701 tgtaatatgt cgggaaatcc aataaattta cacaagctaa cacttatcat gcccctccct
     8761 ctcccctctc ccgaagcacg gcaattctcg ctcaaactgc aaaccctcat tgccgaaaaa
     8821 atcggcaaac acggcaactg gattccattt tcacgtttta tggaattggt tttatacgct
     8881 ccgcaatacg gctactacac cggcggcagc cataaaatcg gcaataccgg ggattttatt
     8941 accgcaccga ccctcacctc tctgtttgca cagacactgg cacgccaact tcaagaactt
     9001 ctatcccaaa cggcgggcaa tatctatgaa ttcggcgcgg gaaccggaca gcttgccgcc
     9061 gatttgttgg gcagcatttc ggacggcatc agccgttact atattattga aatatcgccg
     9121 gagctggcag cacgtcagaa aaacctgatt caagcacgcg caccggaagc atctcaaaaa
     9181 gttgtccact tgaccgcact tcccgaagcg tttgacggca tcatcatcgg caacgaagta
     9241 ctcgatgcca tgcctgtcga aatcgtccgt aaaaatgaag gcggctcatt cgagcatgtc
     9301 ggcgtttgcc tagataatga ccgttttacc tattcggcac gaccgctgca cgacttacag
     9361 ctatctgcct tggcttccct ctattttcct caaacagatt atccctacac cagcgaacta
     9421 catccgcaac aatatgcctt tatccgcacc cttgcctcaa ggcttgaacg cggaggtatg
     9481 atattcatcg actacggttt tgatgcagcg cagtattacc accctcaacg caatcaaggt
     9541 actctgatcg gacactaccg acatcacgtt atccacaatc cttttgactt catcgggttg
     9601 gccgacctga ccgcgcatgt caactttacc gacattgccc aagccggtac ggatgcagga
     9661 ctggatttga caggctatct gccccagtcc cattttctgc tgaatctggg cataaccgaa
     9721 ctgttggcac aagtgggaaa aacagactcg cccgcctaca tccgtgaagc tgctgccgtt
     9781 cagaaactga ttgaccagca tgaaatggga gaattgttta aagtcatcgc attcggtaaa
     9841 aatatcggcg tcgactgggc aggattccgc ttcggcgaca tctgccacaa actctaaccc
     9901 tcatgccgcc tgaatccgct tcagacgaca taaacttttt aacatttaaa aacagtcaac
     9961 taattcaaaa ttaaaaaata cggcttgtca aaaaaacaga aaaacatata atagtgtctt
    10021 cacgaaacgg cgaattagct cagtcggtta gagcagagga atcataatcc ttgtgtccgg
    10081 ggttcgaatc cctgattcgc caccaaattt tcgggggtat agctcagttg gtagagcgct
    10141 tgcatggcat gcaagaggtc agcggttcga tcccgcttac ctccaccaga taaaaaagca
    10201 cagaccgtaa aaaggtatgt gcttttttat tacctgattg ccgggaaata aagaacaaac
    10261 cactgccttc aaaacaggca atcgacttta aacctatcgc cccgcctgtc ctgattttat
    10321 agtgaattaa atttaaaccg gtacagcgtt ggctcgcctt gccgtactat ctgtactgtc
    10381 tgcggcttcg tcgccttgtc ctgatttttg ttaattcact atatcagccc gccagacaaa
    10441 cccgacccga ataatgtctt caggtcgggt ttatggtttc attcccaact tatccagccc
    10501 gacaaccaca atattatgat gacgatgccg aaaacaatgc ggtaataggc aaacgggata
    10561 tagtttttct tggaaacaaa cttcagcagt gctttgaccg ctactaaacc ggaaacaaaa
    10621 gcggcaataa agcctatcag aatcaaaccg acatcatgca gggtgaaaaa ccggtaatgt
    10681 ttcaggacat cataagccgt tgcggcaacc atcatcggaa cggccaagaa aaatgaaaac
    10741 tccgttgccg ttttccgctc gattccccaa agcatcccgc ccataatcgt actacccgaa
    10801 cgggacgtac ccggaaccag tgcaaacact tgggcaacgc cgatcatcaa cgcatcaatc
    10861 ggacgcaatg catcaacatc ggcaatttta ggctctgccc ggctttggcg tttctccacc
    10921 cacaaaataa aaaaaccgcc caaaaccagc atgaccgcca cactcaaagg attgaacaga
    10981 tgttctttaa tctgtttgcc gaacaacagc cccatcacgg cggcaggtat aaaagcaatg
    11041 gcaagattga ggacgaagcg gttggctttc cggtcttttc ccacgccatg caacacattg
    11101 ctgaaacgct gccggtattc aaacactacc gccaaaactg caccgagctg gatggcaatt
    11161 tcaaaaacct tgtgattgct gtgaaaatca atcagattgc cgaacacaat caaatgtccg
    11221 gtgctggaaa tcggtaaaaa ttcggtaaaa ccttctacca agcccatcat cagggctttc
    11281 aggacaatca gaaaatccat tgcttgcgct tctttcggat acgggagttc ggctatttct
    11341 gtacagcagg ggtctgacgc ttgcgttctt ccctgacttt ggcaaccaat tctttaatcg
    11401 tatgaacgcc gccgtcaaag ccattattga agataacgcg gtattttccg ccgacaataa
    11461 cggtcggcgt gctgtcaata ccatattgtt ccgtcagttt ctgcattttt aatgcggcgg
    11521 cggcagcttc gggggaatca taggcgcgca tcagtttttt gccgtcaaag cctttttgag
    11581 acaaagccca ttttccggca acagccctgt tttccaagcg gattttttgt tcgtaaactg
    11641 ctttaaacac agcagggttt gcctgatatt tcaaacccga caaattgacg gcagccgcca
    11701 tcctggccag accgagcatt tcaggctgcc agaccacgtg ctccgtcctc aaataggcat
    11761 cagacggcaa tgccttgccc aatttcaata acaaaggatc gaaatgatgg caatgtacgc
    11821 agaaatagcc gaaaaattcc aaaacctcaa ttttacccga ctgttcttga ggaatgggtt
    11881 tatccaacac aagatagtct tccccttccg tcagggcata tgcctgcgcg gacaacactg
    11941 ccgacagcag cagcggcaac agatgtttga gcttcataat tatttgcttt cgatagaacg
    12001 gatcaggctg gcgacttcat gttttttcaa ctcgtcctgc atttttttca ccgcatcggc
    12061 agacatattg ccgctttgca cccggtaaag cgttttatgt cccgcctgat aaccgaccac
    12121 cttggaagat atgcccaaga ttgccagttt gacacgctgc ccttccgcgc tccggcggtc
    12181 ggcatacgcg cccatttgca gataatgcgt tgcttccgcc ttgtcggacg ttttcatttt
    12241 ctgcacttct ttggcggcgg cactgcgcgc tttttcgatg ctgccgctgt tgaggatttg
    12301 ttccggggtc ggtttgggtg caactttttc cttttccgcc tttttctctt cttttggagc
    12361 ttttttctct gtttctttag acggttttac cgcttgtttt ttaaccgttt cggcatcttt
    12421 cttctgcgct ttttccctga cggtttgttc acgctcttcc gtcagcactt tcttacgcac
    12481 tgcctgtccg tccggctctt cccgttccgg ctcgcccgcc ttttcttcaa cctcgtcggc
    12541 tttatcggca gctttttccg catccgactg ctctgcctct gtcgcagcat ccggttcgga
    12601 caaggcgttt tgatcggccg gttcaggttg gatgtcttcc ttaggctggt ttttcggttt
    12661 caggatttcc gtttctgcag gctgcttcga cggaaccggg attttgaacg cattttgacc
    12721 gctctggttc agataaaaca aaataccggc aataatgacc gtcgccagta tcaaaccgaa
    12781 gaaaaaaccg gacagacctt ttccggattg ggaaaatttg ttcataaaca taccttaatg
    12841 tgtttcagac ggcattaacg ccgtttgctt acgggcggat attctaacaa tatcgccata
    12901 tttgggcaaa acctgcttcc attcccgttc ctataaagcg cgacggaaac ctatggcttt
    12961 catgacgtgg cttctgccga cttcttcgtc gcccgccaaa tccgccaatg tacgcgccac
    13021 gcgcataatg cggtggaagc tgcgggcgga aagggagagt ttttccagca ggccgcccaa
    13081 tgcttcctgc gcttcttttt gaatgcgggc ggatgtgtcg agttcactga cactcaaggc
    13141 ggcattcact ttgccttgcc gtgcgtattg tttgtcgcgg gcggcgataa cgcgttccaa
    13201 aacggacacg ctgctttcac ccgcttcctg ctgcatcagt tcggcggcgg acaggctggg
    13261 gacttcgatg gtcaaatcga tgcggtcgag cagcgggccg gaaattttgc tgcggtaacg
    13321 cgcgacgctt tcgggcgtgc agcggcaggg tttgacggga tgcccgagat agccgcacgg
    13381 gcaggggttc atggcggcga caagttggaa tttggcggga tagacggctt ggcgcgccgc
    13441 tcgggaaatg tggatttcgc cgttttccaa cggttcgcgc aaaacttcca aaactttgcg
    13501 gtcgaactcg ggcaattcat ccaaaaataa aacgccgtga tgcgccaatg aaatttcgcc
    13561 cggacgcgga tccgaaccgc cgccgaccat agccgccgcg ctggcgctgt gatgcggact
    13621 gcggaaagga cggttgctgt cgagttgttg ctggtggttg ggcaggagcg aacgcaatgc
    13681 ccaaacttct accaattcgt cttcggtcag cggcggcagg atgccgggca gccgttggga
    13741 gagcatagac ttgcccgttc ccggcggacc catcatcaaa aggctgtgtc cgcctgcggc
    13801 agcgatttcc aaagcaaggc gggcagtgtg ctgacccttg acatcgacga ggtcgagcaa
    13861 tttggtgttt tcagacggca tctgaggaac ttgacagtcg gtttgcacca aaggttcgat
    13921 accgttcaaa tgggcggcga cttcgcccaa agagcgcgcg ccgtaaacgg taatgccgcg
    13981 catcacggcg gcttgtcctg cgttttcttc aggcaaaaca aatgcacgtt ttgcctgcat
    14041 accctgccac gccatcgcca acgcgccacg cacggggcgc aacagccccg acagtgccaa
    14101 ttcccccgca aactcgtatt ccgccagttt ttcgggtgca acctgccccg atgcggcaag
    14161 gatgccaatt gcaatcggca aatcgaaacg ccccgactct ttgggcaggt cggcgggggc
    14221 gaggttgacg gtaatttttt tggcggggaa ttcaaaaccg ctttgaataa tggcggcacg
    14281 gacgcggtcg cgactttcct ttacttccgt atcgggcagc ccgacgatgt tgaaatgcgg
    14341 caggccgttg gcaaggtggg cttccacttc gaccaacggc gcattcatac cgctcaaggc
    14401 gcggctgtaa accaaggcaa gcgacatatt tcagacggcc ttattcgccg gcttcggttt
    14461 gctgcctgat ttcggcgacg gcttcttcgg cagcggcttc agccgcttcc aatgctgccc
    14521 gttcgggatt ttgcgcggct tcgagttttg ccaaacgcgc ttccaaagcc gccagtttgg
    14581 tacgagtttt gattaaaacc tgctgctgga tgtcgaattc ttcgcgcgta accagatcca
    14641 tacggttgaa cgcgccgccc agcatcgcct taatattttt ttccacatct ttggcagggc
    14701 tgttggcgat ggtttcgctg attttcgaac cgacttcttc aaaaagctgc ttgccgaaca
    14761 taatctgtat ccttcctgaa catatcaaat tcaatcggct attgtataag gaaaaatgcc
    14821 gtctgaaaac gggcggcgga taatcggcaa aacataccgc gcctcctttg cggttgctaa
    14881 attacacctc aaaacacctg ccgcctgaaa acggatttca tattccgcgc aacgccagat
    14941 tacaagacat tacaaaacaa tatactgttt taaatgattt ttccgacgcg catcgtttca
    15001 aactcggctt tttaagccat taagtgcttt gcaaacaaca gaaattgggt tatgctgaaa
    15061 cggattattt acaatttcat atagttttat tacatatctt attgtgattg aagataattt
    15121 atccgaatcc ccctttcggg tatccggatt ttccgttgta cttttattag aaaaacattt
    15181 caggcgcaag ttgcttgcaa tttcaaagcc tgtaattctg aagttttaga cgaggaatag
    15241 cacatgaatc ccatgtacat tacttttgca atctatctgg ttgcagtcct tctcatcggg
    15301 cttgccgcct atttttctac gcgcaatttc gacgattata ttttgggcgg gcgcagccta
    15361 ggcccgtttg ttaccgcgat gtcggcaggc gcgtccgata tgtccggctg gctgctgatg
    15421 ggtctgccgg gcgcgattta cctgagcggt ttgaatgagg cttggattgc catcggcctc
    15481 ttggtcggcg cgtatttcaa ctggctcttg gtggcgggcc gcctgcgcgt gcataccgaa
    15541 tacgccaaca atgcgctgac gctgccggat tatttcttcc accgcttcgg cgcgggcgga
    15601 cacttgatga aagtggtttc cgcactgatt atcctgttct tcttcacgat ttattgcgcc
    15661 tcgggcattg tggcgggcgc aaccctgttc caaagcctgt ttgaaggtat gacttacaat
    15721 caggcaatgt ggctgggcgc gggcgcgacc atcgcctata ccttcttggg cggcttcttg
    15781 gcggtcagct ggacggatac gttgcaggct tctttgatga ttttcgcgct gattttaacg
    15841 ccggtgatgg tctatctggg cttgggcggc gcggaacaga tgtctgccgc gattcaaaac
    15901 gtcgccgcag gcacgggcaa agaatacggc agcctgtttg ccggtacgac cgtcatcggc
    15961 atcatttcca ccgccgcatg gggcttgggc tacttcggac agccgcacat tttggcgcgc
    16021 tttatggccg ccgaaagcgc gaaatcgctg gtatccgcac gccgcatcgg tatgacttgg
    16081 atggcgttgt gccttgcggg cgcggtagcg gtcggttatt tcggcattgc gtatttcggt
    16141 gcaaatcccg acaaagtttc ttctatgagc ggcaaccacg aacgcatctt catcgcgctt
    16201 tccaccctgc tgttcaaccc ttggatcgcc ggcattattt tgagcgcgat tttggcggcg
    16261 gtgatgtcca ccctgtcctg ccagcttttg gtttgctcca gtgcgattac cgaagacttc
    16321 tacaaaggct ttttgcgtaa aaacgcgcaa cagtcggaac tggtatgggt cggccgcctg
    16381 atggtattgg cgattgccgt gatttccatc ctgattgcct ccaatcccga cagcaaagta
    16441 ttgggactgg tgtcttatgc gtgggcaggt ttcggtgcgg cattcggccc gattgtgatt
    16501 ctgtccgtat tgtggaaacg catcactgcc tacggcgcgt tgtcgggtat ggttgcaggt
    16561 gccttaaccg tagtcgtatg ggcggaatgg gtaaaaaaac cggctcaagc agcaggcgaa
    16621 agcggcttgt tgacgatgta cgaaatcgtc ccgggcttta ttgtttgctt aatcattgcc
    16681 gtgttggttt ccctgttcaa caaagaacct tcgcgcgaaa tccaagaacg ctttgaaaaa
    16741 gccgacgcag attaccgcgc cgcccgataa acccctttca gacggcacgg catcccggtt
    16801 cgtgccgtct gaacccgttt ccgggtcaaa cacaaataaa ccttgcctgc atacaggcct
    16861 tatttgtgtt ttacccgttt cattttcaaa gaaacggaag cacctaccct gcccgcattt
    16921 gaagccttgt atttcatctg cggatttatt acgatattac cgtattcagg ccgcaccgat
    16981 gccgcctgcc ccccgaaaaa ctttggagaa tccaaaaaat gtttcatttt gcatttccgg
    17041 cacaaactgc cctgcgccaa gcgataaccg atgcctaccg ccgtaatgaa atcgaagccg
    17101 tacaggatat gttgcaacgt gcacagatga gcgacgaaga gcgcaacgcc gcctccgagc
    17161 ttgcccgccg tttggttacc caagtccgcg ccggccgcac caaagccggc ggcgtagatg
    17221 cgctgatgca cgagttttca ctctccagcg aagaaggcat cgcgctgatg tgtctggcag
    17281 aagccctgct gcgtatcccc gacaacgcca cgcgcgaccg cctgattgcc gacaagattt
    17341 cagacggcaa ctggaaaagc catttgaaca acagcccttc cctcttcgtc aacgccgccg
    17401 cctggggcct gctgattacc ggcaaactga ccgccacaaa cgacagacaa atgagttccg
    17461 cactcagccg cctgatcagc aaaggcggcg caccgctcat ccgccaaggc gtaaattacg
    17521 ccatgcgcct gttgggcaaa cagttcgtaa ccggacagac cattgaagaa gccctgcaaa
    17581 acggcaaaga acgcgaaaaa atgggctacc gcttctcctt cgatatgttg ggcgaagccg
    17641 cctacaccca agccgatgcc gaccgctact accgcgacta tgtcgaagcc atccacgcca
    17701 tcggcaaaga tgcggcagga caaggcgttt acgaaggcaa cggcatttcc gtcaaacttt
    17761 ccgccatcca tccgcgctac tcgcgcgccc aacacggccg tgtgatgggc gaactgttgc
    17821 cgcgcctgaa agagctgttc cttttgggta aaaaatacga tatcggtatc aacatcgatg
    17881 ccgaagaagc caaccgtctg gagctgtctt tggatttgat ggaggctttg gtttcagacc
    17941 ctgacttggc tggctacaaa ggtatcggtt tcgttgtcca agcctaccaa aaacgttgtc
    18001 cgttcgttat cgactacctg attgacctag cccgccgcaa caaccaaaaa ctgatgatcc
    18061 gtttggttaa aggtgcatac tgggacagcg aaatcaaatg ggcgcaagtg gacggcttga
    18121 acggctatcc gacctacacc cgcaaagtcc acaccgacat ctcctacctc gcctgcgcgc
    18181 gcaaactgct ttccgcgcaa gacgcggtat tcccgcaatt tgccacccac aacgcctaca
    18241 ctttgggcgc aatctaccaa atgggtaaag gcaaagattt tgaacaccaa tgcctgcacg
    18301 gtatgggcga aaccctgtac gaccaagtcg tcggcccgca aaacttaggc cgccgcgtgc
    18361 gcgtgtacgc cccggtcggc acacacgaaa ccctgctcgc ctacttggtg cgccgcctgt
    18421 tggaaaacgg cgcgaactcg tctttcgtca accaaatcgt cgatgaaaac atcagcatcg
    18481 acacgctcat ccgcagcccg ttcgacacca tcgccgaaca aggcatccac ctgcacaacg
    18541 ccctgccgct gccgcgtgat ttgtacggaa aaggccgtct gaattcccaa ggcgtcgatt
    18601 tcagcaacga aaccgtgtta caacagcttc aagaacagat gaacaaagcc gccgcgcaag
    18661 acttccacgc cgcctccatc gtcaacggca aagcccgcga tgtcggcgaa gcgcaaccga
    18721 ttaaaaaccc tgccgaccac ggagatgttg tcggtacggt cagctttgcc gatgccgcgc
    18781 ttacccaaga agcggttggt gcagccgttg ccgcgttccc cgaatggagt gcgacacctg
    18841 ccgccgaacg cgccgcctgc ctgcgccgtt tcgccgacct gctcgaacag cacacccccg
    18901 cgctgatgat gcttgccgtg cgcgaagcgg gcaaaacact gaacaacgcc attgccgaag
    18961 tgcgcgaagc cgtcgatttc tgccgctact acgcaaacga agccgaacac accctgcctc
    19021 aagacgcaaa agccgtcggc gcgattgtcg ccatcagccc gtggaacttc ccgctcgcca
    19081 tctttaccgg cgaagtcgtg tccgcattgg cggcaggcaa caccgttatt gccaaacccg
    19141 ccgaacaaac cagcctgatt gccggttatg ccgtttccct catgcacgaa gccggcatcc
    19201 cgacttccgc cctgcaactc gtcctcggcg caggcgacgt gggtgcggca ttgaccaacg
    19261 atgcccgcat cggcggcgtg attttcacag gctcgaccga agtggcgcgc ctgatcaaca
    19321 aagcccttgc caaacgcaac gacaatcccg tcctgattgc cgaaaccggc ggacaaaacg
    19381 ccatgattgt cgattccacc gcacttgccg aacaagtctg cgccgacgta ttgaactccg
    19441 ccttcgacag cgcgggacaa cgctgctccg ccctgcgtat cttgtgcgtc caagaagacg
    19501 ttgccgaccg tatgctcgac atgatcaaag gcgcgatgga cgaactcgtc gtcggcaaac
    19561 cgattcagct cactaccgat gtcggccccg tcatcgatgc cgaagcgcag caaaacctgt
    19621 tgaaccacat caacaaaatg aaaggcgttg ccaagtctta ccacgaagtc aaaaccgccg
    19681 ccgatgtcga ttccgaaaaa tccacgttcg tccgccccat cctgtttgaa ttgaacaacc
    19741 tcaacgaact gcaacgcgaa gtcttcggcc ccgtcctgca cgtcgtccgc taccgcgccg
    19801 acgaactcga cagcgtcatc gaccaaatca acagcaaagg ctacgccctg acccacggcg
    19861 tacacagccg catcgaaggc acggtacgcc acatccgcag ccgcatcgaa gccggcaacg
    19921 tttacgtcaa ccgcaacatc gtcggcgcag tcgtcggcgt acagcccttc ggcggacacg
    19981 gtctgtccgg cacaggtccc aaagcaggcg gttcgttcta cctgcaaaaa ctgacccgcg
    20041 ccggcgaatg ggttgccccg accctgagcc aaatcggaca ggcggacgaa gccgcactca
    20101 aacgcctcga agcactggtt cacaaactgc cgttcaacgc cgaagagaaa aaagccgcag
    20161 cggccgcttt gggacacgcc cgcatccgca ccctgcgccg tgccgaaacc gtccttaccg
    20221 gaccgaccgg cgagcgcaac agcatctcat ggcacgcgcc aaaacgagtt tggatacacg
    20281 gcggcagcac ggttcaagcc tttgccgcac tgaccgaact tgccgcctcc ggcgtacagg
    20341 cagtggtcga acccgacagc ccgctggctt cctacaccgc cgacttggaa ggtctgctgc
    20401 tggtcaacgg caaacccgaa accgtcggca tcagccacgt tgccgccctg tcgcctttgg
    20461 acagcgcgcg caaacaggaa cttgccgccc acgacggcgc actcatccgc gtcctccctt
    20521 cggaaaacgg actcgacatc ctgcaagttt ttgaagaaat ctcttgcagc gtcaacacca
    20581 cagccgccgg cggcaacgcc agcctgatgg cggttgccga ctgattttgc caaaaccgcc
    20641 cgagcgcggc ccgtgaacca atgccgtctg aaaacctttc agacggcatt ttt
//
LOCUS       DAXHNP010000018        20569 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.018, whole genome shotgun sequence.
ACCESSION   DAXHNP010000018 DAXHNP010000000
VERSION     DAXHNP010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20569
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.018"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            99..740
                     /locus_tag="ACFM5C_000498"
     CDS             99..740
                     /locus_tag="ACFM5C_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GrxB family glutaredoxin"
                     /protein_id="HFC6068255.1"
                     /translation="MKLYIYDHCPFCVRARMAAGLFGADVEEAVLANDDEATPIGMIG
                     AKQVPVLQKEDGSFMGESLDIVRHFDREDRLKDEVRPEIRAWLDKVGGYNDKLVQPRV
                     IKIGLPEFATPEAVKYFTDKKEKSIGSFSANLNKTAQYLERINADLQELENLMDGASD
                     GINGGIGMEDILVFPVLRNLTVVRGIAFPRKTMDYLIGMSEKSGVPLYFDRAL"
     gene            1077..1583
                     /locus_tag="ACFM5C_000499"
     CDS             1077..1583
                     /locus_tag="ACFM5C_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068256.1"
                     /translation="MDAFDFFMQGNFKKIATEQGLDRKYFIFHYIVCNLSAISSFCLM
                     KVIHSYTILCLLIMIIGIAFGFILRNRVLSIVKNKQNFLSDMFPLEMPFFSRVYKIPI
                     LARFLNRGMKWLYLQNFFCLVMICFSISLILNEERGWMPYFACYWFGLCYPVSTYYVF
                     LSRDYKHI"
     gene            1719..2519
                     /locus_tag="ACFM5C_000500"
     CDS             1719..2519
                     /locus_tag="ACFM5C_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HFC6068257.1"
                     /translation="MKKTIFNITKMDCPSEEQLIRMRLKDVSDIYELQFDIAGRCLTV
                     YHDNQDTTILQVLEPLNFDSHIISTEVIVDKIVFNKPDEHLEKRLLYQVLMINFVFFI
                     IECSVGIFANSMGLIADSLDMLADSFVYILALSAIGMTLAYKKRVAFLAGITQIILAL
                     FGVIEVIRRFIGAEQLPNYQLMIGTAFLALIANWLCLYLLSKNQNKEIHIKASMIFTS
                     NDIIINIGVIAAGALTLLTHSSYPDLIIGMIVFVIVLFGARNILKLAK"
     gene            complement(2971..3609)
                     /locus_tag="ACFM5C_000501"
     CDS             complement(2971..3609)
                     /locus_tag="ACFM5C_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HFC6068258.1"
                     /translation="MFQNFDLGVFLLAVLPVLLAITVREVARGYTARYWGDNTAEQYG
                     RLTLNPLPHIDLVGTIIVPLLTLMFTPFLFGWARPIPIDSRNFRNPRLAWRCVAASGP
                     LSNLAMAVLWGVVLVLTPYVGGAYQMPLAQMANYGILINAILFALNIIPILPWDGGIF
                     IDTFLSAKYSQAFRKIEPYGTWIILLLMLTGVLGAFIAPIVRLVIAFVQMFV"
     gene            3864..4706
                     /locus_tag="ACFM5C_000502"
     CDS             3864..4706
                     /locus_tag="ACFM5C_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HFC6068259.1"
                     /translation="MDKERILTPAVVFSVALLHLAMVALLWQAHKLPVIESGNVIEFV
                     DLGDFGGGDGAPEGAGAPAAPEPQPEPEPPKPVEPPKPVLKPVVTKKADADIQQPKEE
                     PKPEEKPKPEEKPKPEPKPEAKPVPKPAEKPVERPSEKPAEHPSNASAKADSEQGNGE
                     DKGTGTKGDGTGRGEGSGKGSGGVKGEHGEGAGSSKGNPLRANGSIPRPAYPTLSMEN
                     DEQGTVVLSVLVSPGGHVESVKIVKSSGFSRLDNAARKAAQNGHFQANAWTEFKVPVK
                     FELN"
     gene            4772..5434
                     /gene="exbB"
                     /locus_tag="ACFM5C_000503"
     CDS             4772..5434
                     /gene="exbB"
                     /locus_tag="ACFM5C_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFC6068260.1"
                     /translation="MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARK
                     GNAAVKRHMRDTLSLNDAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLN
                     EYLVIQIRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMS
                     IAAVAGPIGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQK
                     DS"
     gene            5455..5889
                     /locus_tag="ACFM5C_000504"
     CDS             5455..5889
                     /locus_tag="ACFM5C_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFC6068261.1"
                     /translation="MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSI
                     PLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQN
                     ENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ"
     gene            complement(6380..6808)
                     /locus_tag="ACFM5C_000505"
     CDS             complement(6380..6808)
                     /locus_tag="ACFM5C_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HFC6068262.1"
                     /translation="MAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQ
                     PDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCS
                     LLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV"
     gene            complement(6873..8621)
                     /locus_tag="ACFM5C_000506"
     CDS             complement(6873..8621)
                     /locus_tag="ACFM5C_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HFC6068263.1"
                     /translation="MIHYKITPSPLDHEWHILLTFTQDDDLPIEISLPNWVPGSYLIR
                     DFSRHITSIHASCNGTSMPLEQIAKNRWHAAAVRGEWQIRYTVYAFDLSVRGSFLTTE
                     RGFFDGSCLFLKVEGTETLPHRLELTGIPSEWRIATTLPETGRFVFQAASYAELIDRP
                     VEMGLIEFLDFEAAGIPHTIALSGIYPDFDRNRLVSDIKKICETELAVFSSPAPFQKY
                     LFLLHVGDHIYGGLEHADSTALLADRHSLPPFGMTDADDAYTTLLGLFSHEYFHAWNV
                     KSIKPAAFAPYDLDKENYTEQLWAFEGITSYYDDLFLARSRTISPESYLNLLAQGITR
                     VQQTRGRLRQTLAESSFTAWNKFYKPDENSPNAIVSYYQKGALAALCLDLIIRNRSNG
                     RHSLDTIMDKLYREWRDTHSGIPEKHWQIRCQEITGLDLEDFFQKALYSTENLPLAEC
                     LATAGVGLTFLPLPRQHGGGYAEHICPVPSAGDFGARFKQNADHIVLTHVFNGGSAES
                     AALCPQDKIIALDGYACTDFTAQWARYHVNAKINIHFFRAGILRQTVLTVQAAAADTA
                     ILHITDRNLLDNWLFG"
     gene            8948..10381
                     /gene="ccoN"
                     /locus_tag="ACFM5C_000507"
     CDS             8948..10381
                     /gene="ccoN"
                     /locus_tag="ACFM5C_000507"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFC6068264.1"
                     /translation="MDTQTYNYKVVRQFAIMTVVWGIVGMLVGVIVAAQLFAPALDLS
                     NIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGGWLPAFTFWGWQ
                     AVIVAAVVSFPMGWTQGKEYAELEWPIDILITLVWVAYAIVFFGTIAKRKIKHIYVAN
                     WFYGGFILAVALLHIVNNISIPAGLMKSYPVYSGAIDAMVQWWYGHNAVGFFLTAGFL
                     GMMYYFVPKQAARPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVLSL
                     ILFAPSWGGMINGIMTLSGAWDKLRTDPILKFLIVSLSFYGMSTFEGPMMSIKTVNAL
                     SHYTDWTVAHVHAGALGWVGFVTIGSVYYMIPRLFGKEQMHSTKLVEAHFWIATIGVV
                     LYIAAMWIAGVMQGLMWSSLNDDGTLTYSFVESVKRTMPYYVIRFAGGLLYLSGMCIM
                     AYNVYRTAIGGKAVDAEIPAVSQTQHH"
     gene            10408..11019
                     /gene="ccoO"
                     /locus_tag="ACFM5C_000508"
     CDS             10408..11019
                     /gene="ccoO"
                     /locus_tag="ACFM5C_000508"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFC6068265.1"
                     /translation="MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAP
                     GVKPYNALQVAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGS
                     KRTGPDLARVGGRYSDEWHRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKAL
                     RKVGTPYSDEEIAKAPEALANKSELDAVVAYLQGLGLALKNVR"
     gene            11024..11194
                     /locus_tag="ACFM5C_000509"
     CDS             11024..11194
                     /locus_tag="ACFM5C_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HFC6068266.1"
                     /translation="MDINGIRALFTVWIFICFLLVLYIVFNRRNKKNYDNAANSIFDE
                     NQDAQDKKSENR"
     gene            11218..12096
                     /gene="ccoP"
                     /locus_tag="ACFM5C_000510"
                     /pseudo
     CDS             11218..12096
                     /gene="ccoP"
                     /locus_tag="ACFM5C_000510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00782.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
     gene            12205..12553
                     /locus_tag="ACFM5C_000511"
                     /pseudo
     CDS             12205..12553
                     /locus_tag="ACFM5C_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
     gene            12755..14164
                     /locus_tag="ACFM5C_000512"
     CDS             12755..14164
                     /locus_tag="ACFM5C_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HFC6068267.1"
                     /translation="MDTQIKTEADNQSNRRYLTVWRWHFYAGLLVMPFLTLLAVTGLG
                     MLLFANITGKEGERIHVVPQATVQPLSVQAEAARSAVNPETSSVVQYIAPRADDMVAV
                     FRVNNEGKATMVAVDPYTAKVVSTMPRNQGWYYAMDEIHSDMMLGSTGDYLLETAASL
                     TIIMIISGLYLWWVKRRGIKAMLLPPKGRARSWWRNLHGAFGTWVSLILLLFCLSGIA
                     WAGIWGGKFVQAWSQFPAGKWGVEPNPVSVVPTHGEVLNDGKVKEVPWVLELTPMPVS
                     GTTVGKDGINPDEPMTLETVDRFAREIGFKGRYQLNLPKGEDGVWTLSQDSMSYDMIS
                     PFADRTVHIDQYSGKILADIRFDDYNPFGKFMAASIALHMGTLGWWSVLANVLFCLAV
                     IFIGISGCVMWWKRRPTGAVGIVPPAQKVKLPVWWMMALPLLAIALLFPTALLAIAVI
                     WLLDTLLLSRIPVLRRWFK"
     gene            14266..17475
                     /gene="recC"
                     /locus_tag="ACFM5C_000513"
     CDS             14266..17475
                     /gene="recC"
                     /locus_tag="ACFM5C_000513"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HFC6068268.1"
                     /translation="MFYLYQSNRLETLAALFARIQKVKPLKSVLQPEQIIVQSQGMRR
                     YLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSE
                     AFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILS
                     LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYL
                     QLLHKLSEHCDVFVFALNPSGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGR
                     DFFDFLNEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVS
                     AHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQAL
                     PYSVSDVKISRRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLL
                     HDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADV
                     NQTALFGRFAALLETLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLE
                     NEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPF
                     KVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLS
                     YIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGG
                     RSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQ
                     QQLAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAESLLPSG
                     ELGRLWQQDFQTAAKQIDTAVLNSPKLPPLPYAIPSDGQILKGSLGNLYRCGQVFYAY
                     GKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIAQDRALQLLSEWM
                     AFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQKDYTEVA
                     LVFGNASQNPLEQPLFENLVRLLADTFAAAEKKEEAGAA"
     gene            complement(17545..19113)
                     /gene="mtrF"
                     /locus_tag="ACFM5C_000514"
     CDS             complement(17545..19113)
                     /gene="mtrF"
                     /locus_tag="ACFM5C_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041421321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family antimetabolite efflux transporter
                     MtrF"
                     /protein_id="HFC6068269.1"
                     /translation="MSQTDTQRDGRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAAG
                     AYFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILTHTVKNFTGFAPLGTVLVS
                     LLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTASELGYVVLIPLSAII
                     FHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQIIHPDYVVGPEAN
                     WFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWA
                     GVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVT
                     RSLRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGATFLKEVG
                     LGGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDS
                     VTNIITPMMSYFGLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLG
                     LPVGPGAPTFYPAP"
     gene            19445..19657
                     /locus_tag="ACFM5C_000515"
     CDS             19445..19657
                     /locus_tag="ACFM5C_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068270.1"
                     /translation="MKNEIQKIMDKYDPWHEDDFESYENIARDVSLMTDKTFIEHYLL
                     EVYSEENGHFDQENVHAMIEEIKNAI"
     gene            complement(19750..20382)
                     /gene="mtrR"
                     /locus_tag="ACFM5C_000516"
     CDS             complement(19750..20382)
                     /gene="mtrR"
                     /locus_tag="ACFM5C_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     repressor MtrR"
                     /protein_id="HFC6068271.1"
                     /translation="MRKTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTR
                     GALYWHFKNKEDLFDALFQRICDDIENCIAQDAEDAEGGSWAVFRHTLLHFFERLQSN
                     DIYYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKE
                     TAVIFIKSTLDGLIWRWFSSCERFDLGKTAPRIIGIMMDNLENHPDLRRK"
BASE COUNT         5281 a         4713 c         5360 g         5215 t
ORIGIN      
        1 ttatttattt acggtgcata ggcgggaaga taaacttgtt tcgggtggcg cggggtgtta
       61 aggtagccgg taccgacagg ttgacgagga atattttgat gaaactgtat atttacgacc
      121 attgcccgtt ttgcgtgcgt gcgcggatgg ctgccgggct gtttggcgcg gacgttgaag
      181 aagccgtgct ggcaaacgac gacgaggcaa cgccgatcgg tatgatcggt gcgaaacaag
      241 tgcccgtcct gcaaaaagaa gacggttcgt ttatgggcga gagtttggac attgtgcggc
      301 atttcgaccg cgaagaccgt ctgaaagacg aagtccgccc cgagatacgg gcgtggctgg
      361 acaaggtggg cggatacaac gacaaactgg tgcagccgcg cgtgatcaaa atcgggctgc
      421 ctgaatttgc aacgccggaa gcggtgaaat attttacaga caaaaaagag aaaagcatcg
      481 gcagcttttc cgccaatttg aataaaaccg cccaatacct cgaacggata aacgcagatt
      541 tgcaagagtt ggaaaatttg atggacggtg cttcagacgg catcaacggc ggaatcggta
      601 tggaggatat tttggttttc cccgttttga ggaatctgac cgtggtgcgc ggcatcgcgt
      661 tccctcggaa gacgatggat tatttaatcg gtatgagtga aaaatcgggc gtgccacttt
      721 atttcgacag ggcattgtaa aagtggctgt tattaactga cagatgaagg aggttctacc
      781 ctatttgagg taaactctat ttaccattgg ccgaaatacc agtgcttatc tccaagacga
      841 ccttcccaat cccttttgcc tcttaaaaag aagtgactag tgtgtaaagt tatagttcct
      901 tttatagctt tccaataaaa ttaaagtatt taaaagcttg tttagttcta atttgttaat
      961 ttctgtatct aaataatgtt cagaatagta ttatttttta aataaaccat gaatagtact
     1021 tcacattgtt tgtcgtatta tttagctttt aaatttctaa tgtgaaagat agtttaatgg
     1081 acgcctttga tttttttatg caaggcaatt ttaaaaaaat tgcaactgaa caaggtttag
     1141 accgtaaata ttttatattc cactatatcg tatgtaattt atctgccatt tcttcttttt
     1201 gtttaatgaa ggttatccat agttatacta tcctttgttt attaataatg ataattggca
     1261 ttgcatttgg atttatcttg agaaataggg ttctatctat agtaaaaaat aaacaaaatt
     1321 ttttatctga tatgtttccc ttggaaatgc ctttcttttc tagagtatac aaaataccta
     1381 tcttggccag attcttgaat aggggaatga aatggcttta tctccaaaat tttttctgtt
     1441 tagttatgat ttgtttctcg atatctctta tccttaatga agaaaggggg tggatgcctt
     1501 attttgcctg ctattggttt ggactttgtt atccagtaag cacttattac gtttttttat
     1561 ccagagatta taaacatatc taaactatta tgcgtggcgg tacttccaaa ggtaaatttt
     1621 aacctaatca atttactcaa accatccaaa aattaccaag cagcaatata aacacagatt
     1681 tatttgagcc aacctgatca aaacaaggaa ctaaatagat gaaaaagacc atttttaaca
     1741 ttaccaaaat ggactgcccg tccgaagaac agctcattcg catgcgttta aaagatgtgt
     1801 ctgatattta tgaattacag tttgatattg ctgggcggtg cttaaccgtc tatcacgata
     1861 atcaagatac aacgatttta caagtacttg aaccgcttaa ttttgatagt catatcattt
     1921 ccaccgaagt gattgttgat aagatagtgt ttaacaagcc tgatgagcac ttagaaaaaa
     1981 gattattata tcaagtgctc atgattaact ttgtgttttt tatcatagag tgttcggttg
     2041 gtatttttgc taattctatg gggctgattg ctgatagtct agatatgctg gcggacagct
     2101 ttgtctatat attggcgcta tcagccattg gtatgacgct ggcgtataaa aaacgtgtgg
     2161 catttttggc ggggataacg cagataatat tggcgttatt tggggtgata gaagtgatta
     2221 ggcgttttat cggtgctgag cagctgccca attatcaact gatgattggc acggcatttt
     2281 tggcattgat tgcaaactgg ctgtgcttat atctactgag caaaaatcaa aataaagaaa
     2341 tccatatcaa agccagcatg atttttacat ccaatgacat tatcatcaat atcggtgtga
     2401 tagcggcggg agcattgacg ttattgactc attctagcta tcctgattta atcattggca
     2461 tgattgtctt tgtcattgta ctatttggtg ccagaaatat tttaaaattg gcaaaataat
     2521 tcctttcacc agcaaaggag tttttatgca aatatcggtc aaagctacct acatacgtgg
     2581 cagtacttcc aaaaacttga ttttttaaaa tgtggttaat gcgagtttgt ttatctggta
     2641 tttgattggc caagccttca tccaagcgtt tgacgatttc acgcaaaaat acccctgatt
     2701 tacacacagg gtctaagaat gtcgcctttg gatttgacca aatctcagac ggcaataaat
     2761 ccagcatttg attggcaagt tttggcgatg tgaaaacctc atcattagac agactggagt
     2821 ttcttaatca gtgtttcagt taatgaaagg tattatcatg caacttggtt ctaataatga
     2881 tgaaaaaaat aagattacac tacaggaaaa cgcggcaggg caatatgtcc tgccgcgttt
     2941 tctggagcgt ttatgccgtc tgaaagccag tcagacgaac atctgcacaa acgcaatcac
     3001 cagccgcaca atcggtgcaa taaacgcacc caaaaccccg gtcagcataa gcagcaggat
     3061 aatccacgtc ccataaggtt cgattttgcg gaacgcttgc gaatatttcg ccgacaggaa
     3121 ggtgtcgatg aaaatgccgc cgtcccaagg caggatgggg atgatgttga gcgcgaacag
     3181 aatcgcattg atcagaatac cgtagtttgc catttgagcc aacggcatct gatacgcccc
     3241 accgacatac ggagtcagca ccaaaaccac gccccacaga acagccatcg ccagattcga
     3301 cagcgggccg gacgcggcaa cgcaacgcca ggcaaggcgc gggttgcgga agttgcgcga
     3361 atcgatagga atcggacgcg cccagccgaa caggaagggc gtaaacatca aagtaagcag
     3421 cggtacgatg attgtgccga ccaaatcgat atggggcagg gggttcagtg tcagcctgcc
     3481 gtattgttcg gcagtgttgt ctccccagta gcgcgccgta tagccgcgcg ccacctccct
     3541 gacggtaatg gcgagcagca cgggcaggac ggcaagcaga aacacgccca aatcaaaatt
     3601 ttgaaacatg gttttccttt gaacagatgt ggtgtgcagc ccgaaacggc tgacagacag
     3661 aagcggcaat atatcatcta acctgatttt attggaataa gaaatcagac ggaatcattt
     3721 tttctgccgg cccgttatct gatgatttgc tgtaatacag cgtttaaaca cggtttgcct
     3781 gtgaacggaa cagacattca tatgaccaaa aattgtaaaa ataggttgca aataggaatt
     3841 gttgctatta ttatgcccga attatggata aagaacgaat tttaaccccc gcagtcgtgt
     3901 tttccgtcgc actgctgcat ttggcaatgg tggcattgct ctggcaggcg cacaagctgc
     3961 ccgtgataga gtcaggaaat gttatcgaat ttgtcgattt gggtgatttt ggcggagggg
     4021 acggtgcacc cgaaggcgca ggtgcgcctg ctgcgcctga gccgcaacct gagcctgagc
     4081 cgcccaaacc tgtcgagccg cccaagccgg ttttgaagcc ggtggttacg aaaaaggcgg
     4141 atgcggatat tcagcagcct aaggaagagc cgaaacctga agaaaagccg aaacccgaag
     4201 aaaaaccgaa accagagcct aagccggaag cgaagcctgt cccgaaaccg gcggaaaaac
     4261 cggtcgagag gccgtctgaa aaacctgccg aacatcccag caatgcttct gccaaagcag
     4321 acagcgagca gggtaatggg gaagataagg gaaccggtac caaaggagac ggaacggggc
     4381 gcggagaagg cagcggtaaa ggtagcggcg gtgtcaaagg cgaacacggg gaaggagccg
     4441 gcagcagcaa aggcaatcct ttacgcgcca atggcagcat tccgcgcccg gcttatccca
     4501 cgctttctat ggagaatgac gagcagggta cggttgtttt gagcgttttg gtttctccgg
     4561 gcggtcatgt cgagtccgtt aaaatcgtga aaagcagtgg tttttctcgg ttggacaatg
     4621 cggcacgcaa ggcggcgcaa aacgggcatt ttcaagccaa tgcctggacg gagtttaaag
     4681 tccccgtcaa gtttgaattg aattaggcgg ttgccgcagc ggtttgcggc agcttggatg
     4741 tttgattggt tttttcagtg ttggaatcat tatgaatttg aaattagtat ttgaatcggg
     4801 cgatcccgtc ctgatcggtg tgtttgtgtt gatgctgttg atgagtatcg taacgtggtg
     4861 tttggttgtc ttgcgctgca tcaagctgta tcgggcgcgc aaagggaatg ccgccgtcaa
     4921 acggcatatg cgcgatactt tgtcgctgaa cgacgcggtc gaaaaagtgc gcgccgtcga
     4981 tgcgcctttg tccaaactgg cgcaagaggc attgcagtct taccgcaact accgccgaaa
     5041 cgaagcgtcc gaactggcgc aggctttgcc gttgaacgag tatttggtca ttcaaatccg
     5101 caacagtatg gcgcagatta tgcgccggtt tgattacggg atgaccgcgc ttgcctccat
     5161 cggcgcgacc gcgccgttta tcgggctgtt cggcacggtt tgggggattt accacgccct
     5221 gatcaatatc gggcaaagcg ggcagatgag tattgcggcg gttgccggcc cgattggcga
     5281 ggcactggtg gcgacggcgg cgggtttgtt cgtggcgatt ccggcggtgt tggcatacaa
     5341 cttcctcaat cgcggcacaa aaatactgac ccaggatttg gatgcgatgg cgcacgattt
     5401 gcacgtccgc ctgcttaatc aaaaggatag ctgattataa aaggatagct gattatggca
     5461 tttggttcga tgaattccgg cgacgattct ccgatgtccg acatcaacgt tacgccgttg
     5521 gtggacgtga tgctggtgtt gctgattgtg tttatgatta ctatgccggt gctgacgcat
     5581 tccatccctt tggaactgcc gaccgcgtcc gagcagacaa acaagcagga caaacagcct
     5641 aaagaccccc tgcgcctgac gattgatgcg aacggcggct attatgtcgg cggggattct
     5701 gcaagcaaag tggaaatcgg ggaagtggaa agccgtctga aagccgccaa ggagcagaat
     5761 gaaaacgtga ttgtggcgat tgcggcagac aaggcggtgg aatacgatta tgtaaacaaa
     5821 gctttagaag ccgcccgtca ggcaggaatc accaaaatcg gttttgtaac cgaaaccaag
     5881 gcgcaataaa gttcgacgct tgaacgaatg ccgtctgaaa gtctttcaga cggcatttct
     5941 tatgtttaat cagctatata tagttgatta aaacaaaaat gagacgacag agcgccgtct
     6001 ccatttctgc gcaggcggga atacaaacat ctgatttttc ttttattttc aaacattact
     6061 gaaatgggta agtctggagt cctgcctgcg cgagaataat gaaaatgtgc atttctaatt
     6121 tttatagtgg attaacaaaa atcaggacaa ggcaacgaag ccgtagacag tacaaatagt
     6181 acggaaccga ttcacttggt gcttcagcac cttagagaat cgttctcttt gagttaaggc
     6241 gaggcaacgc cgtactggtt tttgttaatc cgctataccc actgtaaaaa cggagaagga
     6301 cagaggacgg cagtaaggtt tgccgtcctc tttttcaagt tgcggtggaa tgccgcttga
     6361 aggtgttttc ggcttgtaat cagacgcggg cgttgtccag ccgctctctg aaattttcca
     6421 aatttacgcc tgccgcttgg gcgcggcgga tgatttcgtc aaccggcata ccttctgccg
     6481 cccggcggaa gccccacagg agggagcagc gcgtaccggt ccggcaatag gcaaggacgg
     6541 gatattcggc ttgtccgatg agttggcgga aggtttcgac atcgtgtttt tggatgtcgc
     6601 gtgcggtaac gggttggtga tggaatccag taacgcctgc ttgttccagc cactgtttga
     6661 tttgggcgaa gtcgggttgc gattcttctt cgcggtcggg gcggttgcag atgacggttt
     6721 tgatgcccag ttgcgcgatt tgttccgcat cggctttggt cagttgcgga gaaatataga
     6781 ggtgttcgtc aagtttcaga atggccattt tgtttccttt actttgcggt tgtttttcag
     6841 acggcatttt gtgtgcaatg ccgtctgaaa gtttaaccga acaaccagtt gtccaacagg
     6901 ttccggtctg tgatatgtag gatggcagta tccgctgccg ctgcctgaac cgtcaagacg
     6961 gtttgacgca atatgccggc acggaagaag tggatattga tttttgcatt gacgtggtat
     7021 cgggcccatt gtgcggtaaa gtcggtgcag gcataaccgt ctaaagcaat gattttgtct
     7081 tgcggacaca gtgccgcaga ttccgcgctg ccgccgttga agacatgggt caggacgatg
     7141 tggtcggcgt tttgtttgaa acgtgcgcca aaatcgcctg ccgacgggac ggggcagatg
     7201 tgttctgcgt atccgccgcc gtgttgtcgg ggaagcggca ggaaggtcag tcccacgcct
     7261 gcggttgcca ggcattcggc aagcggcaaa ttttcggtac tgtataacgc tttttggaaa
     7321 aaatcttcca aatccaagcc ggtaatttcc tgacagcgga tttgccagtg tttttccgga
     7381 atacccgagt gtgtgtccct ccactcccga tagagtttgt ccattatcgt atcgagagaa
     7441 tgtctgccgt tgcttcggtt gcgtattatc agatcaaggc acaatgcggc aagcgcgcct
     7501 ttctggtagt agctgacgat ggcgttgggg ctgttttcat caggtttgta aaatttgttc
     7561 cacgcggtaa aactcgattc cgccaaggtc tgcctcaaac ggccgcgggt ttgttgtacg
     7621 cgcgtaatgc cttgtgccag caggtttaaa taagattcgg gcgagatggt gcggctgcgt
     7681 gccaaaaaca aatcgtcgta ataggatgta atgccttcga atgcccatag ttgttcggta
     7741 tagttttctt tgtcgaggtc ataaggggcg aacgcggcag gtttgatgga tttgacgttc
     7801 cacgcgtgaa aatattcgtg ggagaaaagt ccgagcaatg tggtgtaggc atcgtcggca
     7861 tcggtcatac cgaacggcgg aaggctgtgg cggtcggcga gcagggcggt gctgtcggcg
     7921 tgttccaaac cgccgtaaat atggtcgccg acgtggagca ggaacaaata tttttgaaac
     7981 ggggcagggg aggaaaacac cgccagttct gtttcgcaga tttttttgat atccgaaacc
     8041 agcctgttgc ggtcgaaatc gggatagatg ccgcttaagg caattgtgtg cggaatgcct
     8101 gccgcctcaa aatctaaaaa ttcaatcaag cccatctcga caggtcggtc aatcaattcg
     8161 gcataagatg ccgcctgaaa gacaaacctc cctgtttccg gcagcgttgt ggcaatacgc
     8221 cattcggacg gaatacccgt caattccaag cggtgcggca gcgtttccgt tccttcgact
     8281 ttcaaaaaca ggcacgatcc gtcaaaaaaa ccgcgttctg tcgtcaggaa agaacctcga
     8341 accgacaaat cgaatgcata tacggtgtag cggatttgcc actcgccgcg tacggcggca
     8401 gcgtgccagc ggttttttgc aatttgttcg agcggcatgg acgtgccgtt acaggatgca
     8461 tggatagaag tgatgtggcg ggaaaaatcc cgaatcagat agctgcccgg aacccagttt
     8521 ggcaggctta tttctatagg aagatcatca tcttgtgtga atgtcagcag gatgtgccac
     8581 tcgtggtcga gaggggacgg ggttatttta taatgaatca taactatcaa atatatcgtt
     8641 aaacgggatg gattaaatac ctttaaaatg cagcttaacc tacatcaata aagtgccaca
     8701 aaaagggaaa attggaaaca aaagcaatgg cggtcgggtt gtaatttatt ataacaatat
     8761 gatttatatg taataaaaaa cagattaagc aaagggctcg ccggcggcgc gaatgtaatt
     8821 ccgcttggcg taataaggca gatatgttaa atttagaaaa aattacgctt gcccggattg
     8881 caccttaaac aggctgcgga agcggcagga taaaaatctt tattcccata aattcatgga
     8941 gactctcatg gacacacaaa cttacaacta caaagtggtg cgccagttcg ccatcatgac
     9001 tgtagtttgg gggattgtgg gtatgttggt cggcgttatc gtcgccgccc agctttttgc
     9061 tcctgccctt gacttgtcta atatcggacc ttggttccac ttcggccgcc tgcgtccgct
     9121 gcacaccaat gcggttattt tcgcatttgg cggttgcggc ctgatcggca catcatacta
     9181 cgttgtccaa cgtacttgta atacccgtct tttcggcggt tggctgccgg catttacctt
     9241 ttggggctgg caggcggtaa tcgttgccgc cgtcgtcagc ttccctatgg gttggaccca
     9301 aggtaaggaa tatgccgaac tggaatggcc gatcgatatt ctgattactt tggtttgggt
     9361 ggcttacgcc atcgtattct tcggtacgat tgccaaacgt aagattaaac atatttacgt
     9421 tgccaactgg ttctacggcg gctttatttt ggcggtcgca cttttacaca tcgtcaacaa
     9481 tatcagcatc ccggcagggt tgatgaagtc ataccccgtc tattccggtg cgattgatgc
     9541 tatggttcaa tggtggtacg ggcataacgc cgtgggcttc ttcctgactg ccggcttctt
     9601 gggtatgatg tactatttcg tacccaaaca agcagcccgc cccgtttact cctaccgcct
     9661 gtccgtcgtt cacttctggg cgttgatttt tacctatatg tgggcgggtc cgcaccatct
     9721 tcactacact gcgctgcctg actggacgca atctttgggt atggttctgt ctttgattct
     9781 gttcgcaccc tcttggggcg gtatgattaa cggcatcatg accttgtccg gcgcgtggga
     9841 caaactgcgt acagacccga ttcttaaatt cctgattgta tccttgtcct tctacggtat
     9901 gtctaccttt gaaggcccga tgatgtcgat taaaacggtc aatgcattga gccactatac
     9961 ggactggacc gtcgcgcacg ttcatgcggg tgcgttgggc tgggtaggct ttgtaaccat
    10021 cggttccgtc tattacatga ttccccgtct gttcggcaaa gaacagatgc acagcaccaa
    10081 gctggtagaa gcacattttt ggattgcgac catcggcgtg gttctgtata tcgctgccat
    10141 gtggattgcc ggtgtgatgc agggtttgat gtggagttct ttgaacgatg acggtacgct
    10201 gacctactcg tttgtcgaat ccgtaaaacg caccatgcct tactacgtga tccgttttgc
    10261 aggtggttta ttgtatctga gtggtatgtg cattatggcg tacaacgtgt accgcacagc
    10321 catcggtggt aaagcagtcg atgccgaaat ccctgcggtt tcccaaacac agcaccacta
    10381 aaatactaag aaagataggc taccaaaatg aaattacaac aattggctga agaaaaaatc
    10441 ggcgttctga ttgtgttcac gctgcttgta gtcagtgtcg gtctgttgat tgaagttgtg
    10501 cccttggcct ttaccaaggc ggcaacacag ccggcgccgg gcgtgaagcc ttacaatgcc
    10561 ttgcaggttg ccggacgcga tatttacatc cgtgagggct gttacaactg ccactctcaa
    10621 atgattcgtc cgttccgtgc ggaaaccgag cgttacggtc attactctgt tgccggagag
    10681 tcggtttacg accatccgtt ccaatggggt tccaaacgta ccggtcctga tttggcacgt
    10741 gtgggcggtc gctattccga cgaatggcac cgtatccacc tgctgaatcc ccgtgatgtc
    10801 gtgcctgagt ccaatatgcc ggcattcccg tggcttgcac gcaataaagt cgatgtcgat
    10861 gcaaccgttg ccaacatgaa ggctttgcgt aaagtaggta ctccttacag tgatgaggaa
    10921 attgcgaaag cacctgaggc tttggcaaac aaatccgagc tggatgctgt agtcgcctat
    10981 ctgcaaggat tgggtctggc tttgaaaaac gtaaggtaac atcatggata ttaacggtat
    11041 tcgtgctctc ttcacggtat ggatctttat ctgtttcctg ttggtactct atatcgtctt
    11101 caacaggcgg aataagaaaa actacgataa tgccgcaaac agcatttttg atgaaaacca
    11161 agatgcgcaa gataagaaaa gcgaaaaccg ttaatattgt gataacggag caaaacaatg
    11221 aacacaacat cccaatttac tagtaatttc tggaatatat atattgcagt tattgtctta
    11281 ctgagcttta tcgctttggc ttggctgctg ctgtctcaaa atgttgtcaa acgtccgaag
    11341 aagggcgaag aagtacaaac tacgggtcat gagtgggacg gcattgccga atacgacaat
    11401 ccgctgcccc gctggtggtt ttggctgtgt gttttgacgt ggctgttcgg tatcggttat
    11461 ttggttatgt atccgggtgt cggcgactac aaaggtctgc tgaaatggac cagccataac
    11521 caatatgaaa aagaggtcaa aaaagccgat gagcaatacg gcaaactgta tgccaagttt
    11581 gcggatatgc cgattgaaaa agtggcaaaa gaccctcaag ccaagcaaat cgcccaaaac
    11641 ctgtttaaca cttattgtat ccagtgccac ggctctgatg ctaaaggctc taaaggtttt
    11701 ccgaatctga ccgatagcga ttggttgtgg ggcggtgatc ccgataaaat tcacgagacc
    11761 atcgaaaaag gccgtgttgc gactatgcct gcctggggcc ctgctttggg cgaagaaggc
    11821 gtgaaagacg ttgcccatta tgtgatgtcc ctttcaaaac ccgaaggtca gtatgatgag
    11881 gaacgtgccg cgcgcggaca agccttgttc agcggtccgc ctgccaactg tttcacttgc
    11941 cacggcgata agggacaagg tatccaaggt ttgggtccga acctgactga tgacgtgtgg
    12001 ttgtggggcg gtacgcaaaa atccattatc gaaaccatta ccaacggtcg cagcagccaa
    12061 atgcccgctt ggggacattt cttggataaa gacaaactgc atattatgac tgcttatgta
    12121 tggggtcttt ccgataaaga cggtaaagct ctggtgaaaa aagccgagcc tgcaccgact
    12181 cccgcaccgg cggcagaacc cgcagcctct gctcctgcag aagcagcaca agccgcgtcc
    12241 gaagccaaac ctgccgcagc agaacctaaa gccgaggaaa aagccgcacc tgctgccaaa
    12301 gcggacggca aataggttta tgaaaccgtt tgtgccgcct gccatggcaa tgcggttccg
    12361 ggtattcccc atgtaggcat caaagccgat tgggccgacc gcatcaaaaa aggcaaggac
    12421 acgttcgttg cacaaacacg cgatcgaagg tttcaatacg atgcccgcaa aaggcggtcg
    12481 cggcgatttg agcgatgatg aagtgaaagc tgcggttgac tatatggtca accagtcagg
    12541 cggcaaattc taacttgact gagtttccga tattatcggt tatgaaaatc cagattcagt
    12601 attgaatctg gattttttgt tttaacgggc atccggtttt aaacgcagac tgcctatttg
    12661 ttgtaatgaa ttttgacttt agtcataaag aattagtctt tattgtttat aatcgcgcat
    12721 catcacgata gccctatttt caaaaggacg attaatggat acacaaatca aaactgaagc
    12781 cgacaatcag agcaaccggc gttatctgac cgtttggcgg tggcattttt atgccggtct
    12841 gctggttatg ccttttctta ccctgcttgc cgttacgggt ttgggtatgc tgctgtttgc
    12901 caatattacc ggtaaggagg gcgagcggat tcatgttgtg ccgcaggcaa cggtacaacc
    12961 tctgtctgtt caggcggaag cggcacgcag tgccgttaat ccggaaactt cgtccgtcgt
    13021 tcagtatatt gcgccgcgtg ccgatgatat ggttgccgtg ttccgtgtca acaatgaggg
    13081 caaggcaacg atggtcgcgg tcgatcctta tacggcaaaa gtggtcagta ccatgccgcg
    13141 caatcagggt tggtattacg cgatggatga aatccacagc gatatgatgc tcggttcgac
    13201 aggtgattat cttttggaaa cggctgcatc gctgacgatt atcatgataa tcagcggttt
    13261 gtacctttgg tgggtgaaac ggcgcggcat caaggcgatg ctgctgccgc caaaaggcag
    13321 ggcgcgttct tggtggcgga atctgcacgg cgcgtttgga acttgggtgt cgttgatttt
    13381 actgttgttc tgcctgtcgg gtattgcttg ggcaggtatt tggggcggca agttcgtgca
    13441 ggcttggagt cagttcccgg ccggcaaatg gggtgtcgaa ccgaaccctg tttcagtcgt
    13501 gccgacccac ggcgaggtat tgaatgacgg caaggttaag gaagtgccgt gggttttgga
    13561 gcttacgcct atgcctgttt cagggacgac tgtgggcaaa gacggtatta accctgacga
    13621 gccgatgaca ttggaaaccg tcgaccgttt tgcgcgggaa atcggtttca aagggcgtta
    13681 tcagttgaat ttgcccaaag gcgaggacgg agtgtggact ttgtcgcagg attctatgag
    13741 ttacgacatg atcagcccgt ttgccgaccg cacggtgcat atcgaccagt acagcggcaa
    13801 aatccttgcc gacatccgct ttgacgatta caacccgttc ggcaaattta tggcggcaag
    13861 cattgcgctg catatgggta ctttgggctg gtggagcgtg ttggcgaacg ttttgttctg
    13921 ccttgccgtc atttttatcg gtatcagcgg ctgcgtgatg tggtggaaac gccgtccgac
    13981 cggagcggtg ggcatcgttc cgccggcgca gaaagtcaag ctgccggttt ggtggatgat
    14041 ggcattgccg ctattggcaa tcgcactgct cttcccgacc gcactgcttg ccattgccgt
    14101 gatttggctg ttggatacct tgctgctgtc gcggattcct gttttgagga gatggtttaa
    14161 atgacccgat gccgtctgaa gcgttcagac ggcattttgt ttgaaggcgg gcgggggaaa
    14221 ggctatataa tcccgaatac ttgaccacag cttctgtttg aaatcatgtt ttatctgtat
    14281 caatccaacc gtcttgaaac gctggcggca ctgtttgccc gcattcaaaa agtcaaaccg
    14341 ctgaaatcgg ttttacagcc cgaacagatt attgtgcaga gtcaggggat gcgccgctac
    14401 ctcaatacct gcctcgcccg cgatttgggc gtggcggcga atttgtcgtt cagcctgccc
    14461 gccggtctga cgtggaagct gatgaaaaaa ctgattcccg gtattccgga actcagcccg
    14521 tttgcgcctg aagtgatgcg ctggcggctg ttggatttgt tccgcagcga ggcatttcgg
    14581 aatacggcag aatttgaaga tgtgaggaat gtgctgcaag actatctggg cagcggcgaa
    14641 tcggcggatt atcagcttgc tggccagctt gcagacatat ttgaccaata cctcgtgtat
    14701 cgtccgcagt ggatagacgc gtggcagcag ggcaggatac tcagtttggg cgacgatgaa
    14761 atctggcagt ccaaactgtg gcgttatctt gatgacggca ggcagagcgc gccgcaccgt
    14821 gttgcgttgt gggaaaagct gttggaatct ttgagcagtg ataagctgcc cgagcgttat
    14881 ttcgtgttcg gcatttccac gatggcgccg atgtatttgc agcttttgca caagctgtcc
    14941 gaacattgcg atgtgttcgt gtttgcactc aatccgagtg ggatgtattg gggcaacgtc
    15001 atcgaagcgg cgcaaatcct caaaggcggc ggcgatcccg atttaactca ggcagggcat
    15061 ccgctgctcg cctcattggg caagcagggg cgcgactttt tcgacttttt gaacgaaatg
    15121 gaaatagaag gagaaacgcc ggtgtttgaa gaaggcagcc gcgatacgct tttgcacgcc
    15181 ctgcaaaccg atatccaaaa cttggatatg ccgtctgaaa aagcgggaaa tattaatacg
    15241 gacgacggat cgatacgcat cgtctccgca cacagccctt tgcgcgaatt gcagatactc
    15301 aaagacaaac tgttgaaaat tctgcatgaa catcccgatt ggcagccgca tgatatagcc
    15361 gtattaaccc cgaacatcga atcctatacg ccttttatcg aagccgtgtt cggacaggcg
    15421 cagcccggtg cgcaggcatt gccgtattcc gtttcagacg tgaaaatcag ccgccgacaa
    15481 ccgttttttt atacattgga atgcctgtcc gacttgttgg aaagccgatt tgaagtcgat
    15541 aaagtgcttg tgcttttaga aaccgcaccc gtgttgcgcc gtttcggact gactgaggac
    15601 gatttgccgc ttttgcacga catggttgcc gatttgaacg tccgctgggg tttggacgga
    15661 gaaatgcgcg gcggcacgga tcagctgttt acctggaagc aggcggtaga acgcatgata
    15721 ttgggctgga tgctgcccga aggcggcaat ccgatgtggc aggatgtcag cgcgtggtat
    15781 gccgacgtga accaaaccgc cctgttcgga cgttttgccg ccctcctcga aaccctgtcg
    15841 gatattgtac ggatatggca gcaacctgcg acggtcggcg aatgggtggc gcgttgccgg
    15901 gatttgcttg aaacattgtt ccaaaccgaa gccgatgacc aaaaggcagt ccaaaacctc
    15961 gaaaacgaat gggtcaaatg gcaggcggaa accgaattgg cgcaattttc cggacagttg
    16021 ccgccgcaca ccgtcatccg ccacatccgc cgctttctcg acagcgaaag cgaggcaggc
    16081 tttttacgcg gcggcatcac cttttgcagt atggtgccga tgcggagcct gccctttaaa
    16141 gtcatctgtc tgttgggttt gaacgacgga gattttcccc gcaataccaa agccgccgta
    16201 ttcgacctga ttgccaaaca tcccgccaaa ggcgaccgcg cccgccgcga tgacgaccgc
    16261 tacctgttcc tcgaagccct catcagcgcg cgtgaaatcc tctacctgtc ctacatcggg
    16321 cgcgacatcc gcaaagacga agagcttgcc ccgtcttccc tgttgggcga actcatcgat
    16381 accgttgccg ctatggcggg catcggtagt cgccaacttg cacaaaactg gatagaacag
    16441 catccgctgc aagccttttc acgccgatat ttccaagaag gcggacgttc agacggcata
    16501 ttcggcacgc gtaccgacta cgccaccgcg ctcggacaaa cgcccgaacc gccgcaaccc
    16561 tttttcgacc aacccgtaga aaacgccgaa cctgttgccg aaatcggaca ggacgaattt
    16621 atccgtttct ggcgcaaccc cgtcaaagta tggcttcagc agcagcttgc gtggagcgaa
    16681 ccccatatcg gcgaagcctg ggagcctgcc gaacccttcg agccgcaaca cgccgatcaa
    16741 atcgccgaaa tctatattga ggcgcgccgc gaaggacaag atttttccca aaccgccgcc
    16801 cgcatcaggg cggaaagcct gctgccgtcg ggagagttgg gcagactttg gcagcaggac
    16861 ttccaaaccg ctgccaaaca aatcgacacg gcggttttaa acagtcccaa acttcctccg
    16921 ctgccctacg ccataccgtc ggacgggcaa atcctgaaag gcagcttggg caatctgtac
    16981 cgctgcggac aagtgtttta cgcctacggc aaacccaacg cgccgcaacg tatcgctttt
    17041 ttgttggaac acctgatatt ttgcgccgtt atgccgtctg aagccgaaat gcggcaaacc
    17101 tttatcgtcc aatccggaga aaccgaaata ttggcggaaa tcgcgcaaga cagggcattg
    17161 cagctattgt cggaatggat ggcgtttttc aatatcgggc aaaaccgccc gctgccgttt
    17221 tttgccaaaa cctcgcttgc cgccgccgaa gcgtttgccc aaaaacaaga ttgggaagcc
    17281 gccctgaaaa aagcccaaac cgcctattac ggcagcaaag tcagcaaagg gcagaaagac
    17341 tataccgaag tcgccctcgt gttcggcaac gcaagccaaa acccgctcga acagcccctg
    17401 tttgaaaacc tcgtccgtct gcttgccgac acgtttgccg cagcggaaaa aaaggaagag
    17461 gccggagcag cctgacggga tggaaaggca aatgccgtct gaaaacagca aaaaggtttt
    17521 cagacggcat tttgtttatc gtgtttaagg tgcgggatag aatgtgggcg cgccgggacc
    17581 gacgggcagg cccaaaacaa atacccaaat gcagaataag gcaatccacg caatcaagaa
    17641 gaaagcggaa tacggcaaca tcatagaaat cagcgtaccc acgcccgcat cttttttgta
    17701 tttgatcacc gtcgccataa tcagcccgaa ataactcatc atcggcgtaa taatattggt
    17761 aacggaatca ccgatgcggt aagcggcttg aatgacttcg ggcgcgtagc cggccaacat
    17821 cagcataggg acgaaaatcg gcgcagttac cgcccattgc gcggaggcgg agcctatcat
    17881 cagattgata aaagcacaaa ttaaaataaa accgataaac aacacgctgc cgcccaagcc
    17941 gacttctttt aagaacgtcg cccctttaac ggcaatatat tgcccaatat tcgtccaatt
    18001 aaaaaatgcg acaaactgtg cggcaaaaaa gatgatgacc aaataaagcc ccagagtact
    18061 catcgattcg gccatcgcat taacgacttc ctgttcgccg cgcaaacttc gggttaccct
    18121 gccataaaca atgcccggca gcgcaaacaa caagaaaata aaaacaacaa tcgattttaa
    18181 aaacggcgaa ccggaaacca atcctgtttc aggatgacgc aaaataccgt cggcagggac
    18241 gatgctccaa gccaataggg cggataaggc aacaaacacc acgccagccc aaattaatcc
    18301 tttatattcc aaaggcgtga tttcattgga atgccgaatg tctttttctt cttgtgacaa
    18361 atctgattga taagggccca attgcggttc gacgattttt tcagtaacaa aataaccaat
    18421 caaagcaatc acaaacgtac tggctaccat aaaaaaccag ttggcttcag ggcctacgac
    18481 gtagtcggga tggatgattt gcgccgcctg ttgggtgatg cctgccaaga gcggatcgat
    18541 tgtgcctaag aacagattgg ccgaataacc gcccgaaacg ccggcgaaag ccgcagccag
    18601 accggcaagc ggatggcggc cgagggaatg aaagatgatg gcggacaaag ggattaggac
    18661 gacatagccc aattcagaag cggtattaga taaaatccct gtaaaaacaa ccataaaagt
    18721 agtgagtttg cgtggagatt ttgtgagcaa taagcgcatt aatgcggaaa tcaagcccga
    18781 tttttccgca atccccacgc ccaataaaga aaccaacacc gttcccaacg gcgcgaaacc
    18841 ggtgaaattt ttaacggtat gcgtcaggat tttgatcaaa ccgtcagcat cgagcaggct
    18901 gacaacgtga atcaaaccgt catcggcacg tcctttcgca ccaacagggc gcggatcggg
    18961 gacggatagt ccgaaatacg caccggcggc agaggcaatc agcaataaca caatgaaaat
    19021 aataaaaagc gtaaccgggt gcggcaacat attgcccagc cattcgactg tgcgtaaaaa
    19081 tcgtccgtcc cgttgcgtat cggtttgact catctgcttc tccttaaaaa atatattgag
    19141 tgcattaaat ttttgaatgt aacatgaagt gttttgtaag caaactaaaa taatcgcata
    19201 tgtatataac cgcaatagat taaaacagaa aatgcccaca tcgttattct cataaaggcg
    19261 gtaatccgaa aacttgacgt taaagcctta tcaggaatga ctggaactca acaaagcggt
    19321 ttcccgcttt cgcggaaatg gcgggatttt cggtttttgt ttgcaaaaat gccggagaaa
    19381 aatgcagttt acattttgaa tggtattgtt attaattgta aataaatatt ggaaggtaaa
    19441 tgatatgaaa aatgaaattc aaaaaattat ggacaaatat gatccatggc atgaagatga
    19501 ttttgagtcg tatgaaaaca ttgccagaga tgtatcgttg atgacagata aaacgttcat
    19561 tgaacattat ttgttagaag tttattcaga agaaaacgga cattttgacc aagagaatgt
    19621 ccatgcaatg atagaagaaa ttaaaaatgc aatttagtga atatgtattt ttagaagaag
    19681 gctttgtgtc attttgatgc cgtctgaaag ggtttgttcg tttcagacgg cattgttacc
    19741 aaggcttgat tatttccggc gcaggtcggg atggttttcc aagttgtcca tcattatccc
    19801 gatgatgcgc ggggcggttt tgcccaaatc gaaacgttcg caggaagaga accaccgcca
    19861 aatcagcccg tccaaggttg atttgatgaa gatgaccgcc gtttccttgt ccaaatcgtc
    19921 agccaaatcc tgattttcca ccgcttcggt caaaacggcg gtaattttct cgcgccagat
    19981 tgcctgatgc ttgcgggcaa tggcgataac ggcggcgttt tgctccgtgt gttcgcattt
    20041 taaaaacagg atgttgtgga atttgtagta gatgtcgttg ctttgcagcc gctcgaaaaa
    20101 gtgcagcagc gtgtggcgga ataccgccca agaccctcct tcggcatctt cggcatcttg
    20161 cgcgatgcag ttttcgatgt cgtcgcagat acgttggaac agcgcgtcga acaagtcttc
    20221 cttatttttg aaatgccaat agagcgcgcc gcgcgttacg ccggcggctt gggcgatttc
    20281 gttgagcgag gtgcgcgcaa tccctttgcg gtaaaaggtt tccaaggcgg caagcatcag
    20341 gtgttctttg gttttcaagg cttcggtttt ggtttttctc ataatggcgt tttcgtttcg
    20401 ggtcggtttg atgagggcgg attataaaaa agactttgta accatgcaat cgtgtatgta
    20461 taatgaaacc catgaaattg agactacatc tcaactttga aaacaggcat aacctgcttt
    20521 gcaacccgtt cgaacattcg ggtatcaaag caggcggttt ttatatcct
//
LOCUS       DAXHNP010000019        20036 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.019, whole genome shotgun sequence.
ACCESSION   DAXHNP010000019 DAXHNP010000000
VERSION     DAXHNP010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20036
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.019"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(199..274)
                     /locus_tag="ACFM5C_000517"
     tRNA            complement(199..274)
                     /locus_tag="ACFM5C_000517"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(239..241),aa:Asn,seq:gtt)
     gene            complement(367..726)
                     /locus_tag="ACFM5C_000518"
     CDS             complement(367..726)
                     /locus_tag="ACFM5C_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HFC6068272.1"
                     /translation="MQQLLISILEDLNNTSTDIIASAVISTDGLPMATMLPSHLNSDR
                     VGAISATLLALGSRSVQELACGELEQVMIKGKSGYILLSQAGKDAVLVLVAKETGRLG
                     LILLDAKRAARHIAEAI"
     gene            complement(749..1393)
                     /locus_tag="ACFM5C_000519"
     CDS             complement(749..1393)
                     /locus_tag="ACFM5C_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HFC6068273.1"
                     /translation="MESTLSLQANLYPRLTPAGAFYAVSSDAPSAGKTLLHSLLKADV
                     DEMVSSEKLLTWADTADIDTALNLLYRLQKLEFLYGDENGHSDGINLSDEQLPLLMEQ
                     LSGSGKALLVDRNGLYLANANFHHEAAEELGLLAAEVAQMEKKYRLLIKNNLYINNNA
                     WGVCDPSGQSELTFFPLYIGSTKFILVIGGIPDLGKEAFVTLVRILYRRYSNRV"
     gene            complement(1395..1931)
                     /locus_tag="ACFM5C_000520"
     CDS             complement(1395..1931)
                     /locus_tag="ACFM5C_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HFC6068274.1"
                     /translation="MRENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKR
                     NTTVAMDYGAISLDEDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKD
                     LEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKHNLNVPVFEIDARKEDD
                     VKQLVSAMLFSIDPGLEV"
     gene            complement(1943..3040)
                     /locus_tag="ACFM5C_000521"
     CDS             complement(1943..3040)
                     /locus_tag="ACFM5C_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6068275.1"
                     /translation="MEVQLPKIKTVRVMLAGMTAQQESVFKMAFKMHNTTRYETVSPS
                     DGSAVPDLVLADTDAEGGFELWKELAERYKDIPVAVCSEKVPDSEVPYLPKPIRFETL
                     FPMLRKLLQGENVYGKSFIAPADRSAKNNGNVQRTVTIRQFNPNKGLLGALRFAEKNR
                     QDIAILHGNKPVLIVFPSIQRVLLTESVQKLEELCKDENLQVSCKTVPDNPQWREKAK
                     VGIMSCMWQFSIWTAQGRLIYPISPDTPFTLKSWPNLTRLANVPGSIRLSAFLTKASV
                     NLNVLYKVMPLNLNDILNYLAATYTTGFLSVDLKTVSQQAYSDMADKINIGADSASDS
                     EMMKKAEKITTPSQSQSRGLLQRLMKKLLGS"
     gene            complement(3043..4479)
                     /locus_tag="ACFM5C_000522"
     CDS             complement(3043..4479)
                     /locus_tag="ACFM5C_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6068276.1"
                     /translation="MENSLIIGLALAVLLMLLVMRAKQGKKTPKRKSQGVGNTQGQTP
                     GSNDSDWVDQIGQSVSDGTQPDWSWNESAETASAAVSAQEVDPLTEYQVYKQFGYQGK
                     AAESLAAYLDGIPDGEAKPENLIRELLDINLEVGDVDVLADNLQKYGKLIPSELLAKY
                     IEQALQRDSNHLRIRVLAEEGLGWGTQEIEKRAEGGSATAASASPPPDAGGKAYEAEE
                     IKRIPIVRGKKDVSGISQEEIGAIAGLVRADQGAKILKDKVSYETASKQYDRAIQTSE
                     KPANLIIDALKLDYQHADIDRFAGHLWKLYQTLGNYGRQVKERMLGWGYSLGYHEVFD
                     DLEKGPNDRQIKDIGMGHGYLPKNIQKFKSQHRDLVLQDSSLINTGSSPADDAVKEVE
                     SLLMYGQIEAAMDVLEQAVLKYPDESQLYITLIDIYERTEDWDRLGQFLRVLRERADR
                     LPEEVVMLMSRLLQRMNQNIKKIKRYGK"
     gene            complement(4699..5481)
                     /gene="bioC"
                     /locus_tag="ACFM5C_000523"
     CDS             complement(4699..5481)
                     /gene="bioC"
                     /locus_tag="ACFM5C_000523"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HFC6068277.1"
                     /translation="MESLTAINKSRIRQAFQKALNDYDRHALIQQKMTINLMAHLQDY
                     LPDMPLENVLELGCGSGMLSALLQKQISANYWLFNDLCDVQPQLAEKLPQSFDFYCGD
                     AENFPFQRQFDLIASASAVQWFHQPDAFITHCKTGLKANGLLAVATFGKDNLKEVRQI
                     TNIGLNYPTLSQWQTWLAKDFELLWCEDFKVILDFDTPLDVLKHLKYTGVTATNQKNW
                     TRKNLNGFIGDYLSAFSMPSGKVRLTYHPLFFIARYSAEGRQ"
     gene            complement(5469..6116)
                     /locus_tag="ACFM5C_000524"
     CDS             complement(5469..6116)
                     /locus_tag="ACFM5C_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFC6068278.1"
                     /translation="MKTKFYNHQGGHLILYFAGWGTPPDAVNHLILPENHDLLICYDY
                     QDVNLDFDFSAYRHIRLVAWSMGVWAAERALQGIRLKSATAVNGTGLPCDDNFGIPFA
                     VFKGTLENLTEDTRLKFERRICGDKASFEDYQQFPARPFDEIHQELTSLFKMIGQDRC
                     TDLIRWTNALVGSGDKIFMPANQHRYWTPRCTVREIDGGHYLFSRFTHWSALWNH"
     gene            complement(6126..7268)
                     /gene="bioF"
                     /locus_tag="ACFM5C_000525"
     CDS             complement(6126..7268)
                     /gene="bioF"
                     /locus_tag="ACFM5C_000525"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HFC6068279.1"
                     /translation="MKVFKQQLEQLGAQNQYRSIPDLIHQGRYITRENRKMLNMSSND
                     YLGLASDENLRRSFLQQYGGNFPSFTSSSSRLLTGNFPIYTDLEELVAQRFQRESALL
                     FNSGYHANLGILPALTTTKSLILADKFVHASMIDGIRLSRCAFFRYRHNDYEHLKNLL
                     EKNVGKFDRTFIVTESVFSMDGDVADLKQLVQLKKQFPNTYLYVDEAHAIGVYGQNGL
                     GIAERDNLIAEIDLLVGTFGKALASVGAYAVCNQVLKECLINQMRPLIFSTALPPFNV
                     AWTYFIFERLPQFSKERSHLEQLSAFLRREVAHRTQIMPSQTCIVPYILGGNEAALAK
                     AEYLQRQGYYCLPIRPPTVPKNTSRIRLSLTADMTTDEVRQFAACL"
     gene            complement(7290..7427)
                     /locus_tag="ACFM5C_000526"
     CDS             complement(7290..7427)
                     /locus_tag="ACFM5C_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methyltransferase"
                     /protein_id="HFC6068280.1"
                     /translation="MATETNVAEISALDYEGRGVAKVGGKTVFIKRALLDCLMLGWFR
                     L"
     gene            7491..8567
                     /locus_tag="ACFM5C_000527"
     CDS             7491..8567
                     /locus_tag="ACFM5C_000527"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HFC6068281.1"
                     /translation="MICRKPIGHKPYFDMNKTICRTAALLISGFSYANTVIPDVSPVA
                     QGQHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS
                     IQKERGDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASVPGVRSHGCVRMKS
                     PDALEFAKTIASGSPASVIYQMAGLNEDADRNLWLAAFRDPYGKNNLDIASLKKSIAQ
                     WAKTQGKTIAPEKVDAVLKDRTGSAVCLTCGKNGKMKMPLKSLAWIQGSSSYSQAEVI
                     EQTEETNSAEISETRTPEVPDVHTPEAQPHLNTQSDGTPTAYTEPAADSSPQVETPDQ
                     AASEPVDVLFSIDVIRQGNLRLGN"
     gene            complement(8774..10240)
                     /locus_tag="ACFM5C_000528"
     CDS             complement(8774..10240)
                     /locus_tag="ACFM5C_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6068282.1"
                     /translation="MMKLGFKPIPLAIAAVLCALVLALPVPDGVKPQAWTLLAMFIGV
                     IAAIIGKAMPLGALSIIAVGLVAVTGVTADKPGAAMSDALSAFANPLIWLIAIAVMIS
                     RGLLKTGLGMRIGYLFIAVFGRKTLGIGYSLALSELLLAPVTPSNTARGGGIIHPIMQ
                     SIAGSYGSNPAKGTEGKMGKYLALVNYHSNPISSAMFITATAPNPLIVNLIAENLGSS
                     FRLSWGAWAWAMAVPGVIAFFVMPLILYFLYPPEIKETPNAVQFAKDRLREMGKMSAD
                     EIIMAVIFGILLLLWADVPALITGNHAFSINATATAFIGLSLLLLSGVLTWDDVLKEK
                     SAWDTIIWFGALIMMAAFLNKLGLIKWFSGVLAESVGGLGVSGTAAGVILVLAYMYAH
                     YMFASTTAHITAMFGAFFAAAVSLNAPAMPTALMMAAASNIMMTLTHYATGTSPVIFG
                     SGYTTMGEWWKAGFIMSVVNFLIFFVIGSIWWKVLGYW"
     gene            complement(10438..11361)
                     /gene="speB"
                     /locus_tag="ACFM5C_000529"
     CDS             complement(10438..11361)
                     /gene="speB"
                     /locus_tag="ACFM5C_000529"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HFC6068283.1"
                     /translation="MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPY
                     DMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRD
                     FVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNG
                     SEYDHGTMFYTAPKEGLIDPSRSVQIGIRTEHSKKLPFTVLTAPQVNEDSVEETVRKI
                     KETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVE
                     VAPSYDQSDITALAGATIALEMLYLQGAKKD"
     gene            complement(11460..13352)
                     /gene="speA"
                     /locus_tag="ACFM5C_000530"
     CDS             complement(11460..13352)
                     /gene="speA"
                     /locus_tag="ACFM5C_000530"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFC6068284.1"
                     /translation="MPILTIREVCNINHWGIGYYDVDDSGEIIVRPNPSQHNQTVSLQ
                     KLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQ
                     HRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEK
                     LGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLS
                     ASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNI
                     RCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYAATVVWGISQACLEHGLPHPTIITESG
                     RGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSW
                     IHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQ
                     ERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDH
                     YIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQ
                     FTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGY
                     TYLEDE"
     gene            complement(13519..13803)
                     /locus_tag="ACFM5C_000531"
     CDS             complement(13519..13803)
                     /locus_tag="ACFM5C_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6068285.1"
                     /translation="MKKLLLVAVVSLSAAAAFAGDSAERQIYGDPHFEQNRTKAVKML
                     EQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR"
     gene            complement(13954..15762)
                     /gene="aspS"
                     /locus_tag="ACFM5C_000532"
     CDS             complement(13954..15762)
                     /gene="aspS"
                     /locus_tag="ACFM5C_000532"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFC6068286.1"
                     /translation="MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGI
                     VQVVIDPDTPEAFAAADSSRNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVL
                     NAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFID
                     IETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALGVDLGDFPRMPYSEA
                     MFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGTKFSRKE
                     IDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIARTGAQ
                     NGDIIFFGADKTKVVNEAIGALRIKVGLEHGKDNGYFTDEWKPLWVVDFPMFEYDEEA
                     DRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKV
                     FAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKT
                     QRAQCLLTNAPNSVDDKQLRELSLRLRQKAAETKEA"
     gene            complement(15820..16521)
                     /locus_tag="ACFM5C_000533"
     CDS             complement(15820..16521)
                     /locus_tag="ACFM5C_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HFC6068287.1"
                     /translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
                     QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
                     PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPK
                     DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
                     AGPMPSEKADLPEQQ"
     gene            complement(16664..17812)
                     /locus_tag="ACFM5C_000534"
     CDS             complement(16664..17812)
                     /locus_tag="ACFM5C_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HFC6068288.1"
                     /translation="MPTMGAEMNTRNMRYILLTGLLPMASAFGETALQCAALTDNVTR
                     LACYDRIFAAQLPSSAGQEGQESKAVLNLTETVRSSLDKGEAVIVVEKGGDALPADSA
                     GETADIYTPLSLMYDLDKNDLRGLLGVREHNPMYLMPLWYNNSPNYAPSSPTRGTTVQ
                     EKFGQQKRAETKLQVSFKSKIAEDLFKTRADLWFGYTQRSDWQIYNQGRKSAPFRNTD
                     YKPEIFLTQPVKADLPFGGRLRMLGAGFVHQSNGQSRPESRSWNRIYAMAGMEWGKLT
                     VIPRVWVRAFDQSGDKNDNPDIADYMGYGDVKLQYRLNDRQNVYSVLRYNPKTGYGAI
                     EAAYTFPIKGKLKGVVRGFHGYGESLIDYNHKQNGIGIGLMFNDLDGI"
     gene            complement(17973..18236)
                     /gene="rpsT"
                     /locus_tag="ACFM5C_000535"
     CDS             complement(17973..18236)
                     /gene="rpsT"
                     /locus_tag="ACFM5C_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFC6068289.1"
                     /translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
                     AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
     gene            18539..19681
                     /locus_tag="ACFM5C_000536"
     CDS             18539..19681
                     /locus_tag="ACFM5C_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFC6068290.1"
                     /translation="MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDT
                     LNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFL
                     PRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGK
                     ELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDL
                     KAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEV
                     LNPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKM
                     PAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN"
BASE COUNT         5157 a         5181 c         4655 g         5043 t
ORIGIN      
        1 gccgtactgg tttttgttaa tccactataa aatcgagttt atcctagctg tccaggacag
       61 cccctatttt ttcataacca tcacgaaagg aattttgcaa agattttatt ccatctcaaa
      121 acaatcatct caaaaatgcg tttctgaccg ccggtaaaac aaaaccctct aagaaaatac
      181 ttagagggtt ttgaaatttg gctccccgac ctgggctcga accagggacc tgcggattaa
      241 cagtccgtcg ctctaccgac tgagctatcg gggaataagc gcgaataata aaacagaaat
      301 accgaacgtg tcaatataaa ttgacaatcg attgcacttt atctgcaagc ccgcaatctt
      361 tatatgttat atggcttccg caatatgcct tgccgcacgt ttggcatcca ataggattaa
      421 accaagtctg ccggtttctt ttgccaccag caccaacacg gcatctttac ccgcctgact
      481 taaaaggata tagcctgatt ttcctttaat catcacttgt tccaattccc cgcaggcgag
      541 ttcctgcacc gagcgactcc ccaaagcaag caaagtggca gaaatcgccc ctaccctgtc
      601 cgaattcaaa tgtgaaggaa gcattgtcgc catcggcaat ccgtcggttg agataacggc
      661 agacgcgata atatccgtag atgtattgtt taaatcttca aggattgaaa tcaataattg
      721 ctgcataacc cctcctctct cccaagtttt acacgcggtt gctgtaacgg cggtataaaa
      781 tccttaccaa agtaacaaat gcctctttgc ccaaatcggg aatgccgccg ataaccaaaa
      841 taaatttggt tgaaccgata tacaatggga aaaatgtcaa ttcgctctga ccggaaggat
      901 cgcaaacgcc ccaagcgtta ttgttgatat acaggttgtt cttaatcagc agccggtatt
      961 tcttttccat ctgtgcgact tctgccgcca acaaccccaa ctcttccgcc gcctcatgat
     1021 ggaaattggc gttggcaaga tacagaccgt tccgatcgac caataacgcc ttaccgctgc
     1081 cggacaattg ttccatcagc aacggcaatt gctcgtccga caaattgatg ccgtctgaat
     1141 gaccgttttc atcgccatag aggaattcga gtttttgcaa acggtacaac aggttcaaag
     1201 cggtatcgat gtcggcggtg tccgcccagg taagcagctt ctcactgctg accatttcgt
     1261 ccacatccgc tttcaacagg ctgtgcaaca aagttttacc ggcactgggg gcatcgctgg
     1321 atacggcata aaatgcaccg gcaggagtca ggcggggata taaatttgct tgtagtgaaa
     1381 gtgttgattc catattaaac ctccagtccc ggatcaatag aaaataacat tgcgctaacc
     1441 aattgtttta cgtcatcttc cttacgggca tcaatttcaa aaaccggaac attaagatta
     1501 tgttttgcaa gatatttgtg atacacgtcg ataccgggct gagagcgtat atccatcttg
     1561 gtaataccga caacgacggg tgccttctcc agcagccctc gaaacgaatg taaaaagaat
     1621 tccaaatctt tcaacggatt ggttcgggca ttatctaaaa gcaagaccaa acccatactg
     1681 ccttggctta agatttccca cataaagttg aaccgttcct gaccgggcgt accatataaa
     1741 tggactttgg tatcctcatc caagctgatg gccccgtagt ccatcgccac tgtcgtattc
     1801 cttttcctat ccaaagtcat atcggatgcg gaagcatcgg tctgaacgag tgcttcgtcc
     1861 gaaatagccg caatggcagt ggttttccct acgccgacag gtcctgtgaa aataatttta
     1921 ttttctctca tctctccgcc tcttagctgc ccaacagttt tttcatcagc ctttgcagaa
     1981 gaccgcgcga ctgggattgg gatggtgttg tgattttttc cgcttttttc atcatttcac
     2041 tatcagaggc agaatcggct ccgatattta ttttatccgc catatcggag tatgcctgtt
     2101 gtgaaaccgt ttttaaatct accgacaaaa acccggttgt ataggttgcc gcaagataat
     2161 tcagaatatc attgaggttt aaaggcatca ctttatacaa cacgttaagg ttgacggatg
     2221 ccttggtcag aaatgccgac aagcgtatcg accccggcac atttgccaac cgggtcaggt
     2281 ttggccaaga tttcaacgta aacggagtat cgggagaaat cggataaatc aacctgccct
     2341 gcgccgtcca aatggaaaac tgccacatac aggacataat gcctacttta gccttttcgc
     2401 gccattgcgg gttatcggga acagtcttgc agctgacctg caaattttcg tctttgcaca
     2461 attcttcgag tttttgcaca ctttctgtca gcaaaacccg ttgtatcgag gggaaaacaa
     2521 taaggaccgg cttatttcca tgcaagatag cgatgtcctg cctgttcttt tccgcaaacc
     2581 gcaacgcccc caataatcct ttattcgggt taaactggcg tatcgtaacc gtacgctgca
     2641 cattcccgtt atttttcgcc gaccggtctg cgggtgcaat aaacgatttc ccataaacat
     2701 tctcgccctg caacaatttg cggagcatag gaaacaatgt ttcaaaccga atcggtttgg
     2761 gcaggtaggg aacttcagaa tcgggaactt tctccgaaca gacggcgacg ggtatatcct
     2821 tataacgctc ggcaagctct ttccaaagtt caaaaccgcc ctcggcatcg gtatccgcca
     2881 aaaccaaatc gggcacggca ctgccgtctg aaggggatac tgtttcataa cgggtggtat
     2941 tgtgcatttt gaatgccatt ttgaaaacgg attcctgctg cgccgtcatc cccgccaaca
     3001 ttacgcgtac tgttttaatt ttcggcagtt gaacttccat ttttattttc cgtaccgttt
     3061 tattttttta atattttgat tcatacgctg cagcagccgg ctcatcagca taacgacctc
     3121 ttcaggaagc ctgtccgcac gttccctcaa tacccttaaa aactgcccca acctatccca
     3181 atcttcagta cgttcataaa tatcgatcaa cgtaatataa agctgggact cgtcgggata
     3241 tttcaatacc gcctgctcca acacatccat tgccgcttca atctgaccat acatcagcaa
     3301 cgactctact tccttaaccg catcgtctgc cggagacgaa ccggtgttga tcaacgaaga
     3361 atcttgaagc accaaatccc gatgttgcga tttgaatttc tgtatatttt tcggcagata
     3421 cccgtgcccc ataccgatgt ctttgatttg ccggtcgttc ggcccttttt ccaaatcatc
     3481 gaaaacttca tggtaaccca agctgtaccc ccaccccagc atccgctctt taacctgcct
     3541 gccgtagtta cccaacgttt ggtaaagttt ccacaaatgt ccggcaaaac ggtctatgtc
     3601 cgcgtgttgg taatcgagtt tcaacgcatc gataatcagg tttgcaggtt tttcggaagt
     3661 ttggatggca cggtcgtatt gtttcgatgc cgtttcatag ctgactttgt ctttaaggat
     3721 tttcgcacct tgatcggcgc gaaccaaacc ggcaatcgca ccgatttcct cttgactgat
     3781 tccggacacg tcttttttgc cccgcacaat cgggatgcgc ttgatttctt cggcttcata
     3841 agccttaccg ccggcatccg gcgggggcga tgcggaagct gccgtcgcag aaccgccttc
     3901 cgcacgtttt tcaatctcct gagtgcccca tcccaaacct tcttccgcca agacacggat
     3961 acgcaaatgg tttgaatcgc gctgtaatgc ctgttcgata tattttgcca aaagttcgga
     4021 aggaatcagt ttgccgtatt tttgcagatt gtctgccaaa acatcgacat cccccacttc
     4081 gagattgata tcgagcagct cgcggataag gttttcaggt ttcgcttcac catccggaat
     4141 gccgtccaga taggcagcca aagattcggc agccttgccc tgataaccga attgcttata
     4201 aacctgatac tccgtaagcg gatcgacttc ttgcgcggat acggcggcgg atgcggtctc
     4261 ggcactttcg ttccaagacc agtcgggttg cgtgccgtct gaaaccgatt gtccaatctg
     4321 atcgacccag tccgaatcat tgcttccggg tgtctgcccc tgcgtattgc cgacaccttg
     4381 ggatttgcgc ttcggtgttt tcttaccctg cttcgcacgc ataaccaaaa gcatcagcaa
     4441 taccgccagt gccaaaccga taattaatga gttttccaaa ggatactccc gataccgtaa
     4501 cgagcggata gctgaccgcc tgcaacggcc attgtccgct tttattatta acgatttact
     4561 gaaatagact tgtaagtttt aaatcatacc ataatttaac gtttaacaat atgccttctg
     4621 cacaagcctc gccatattac cttttaccca catcagtatc aatacccgat ataaaaataa
     4681 ctttgcccat aagctgcctt attgcctgcc ctccgcagag tagcgcgcga taaaaaataa
     4741 cggatgataa gtcaggcgca ctttgcccga cggcatactg aacgccgaca agtaatcgcc
     4801 aataaatcca ttgagatttt ttcttgtcca atttttttgg ttcgtggcgg taacgcctgt
     4861 atatttaagg tgtttgagta catctaacgg cgtatcaaag tctagtatta ccttaaaatc
     4921 ctcacaccat aaaagctcaa aatctttggc taaccaagtc tgccattggg ataaagtcgg
     4981 gtaatttaag cctatatttg taatttggcg gacttctttt aaattgtctt tgccaaaggt
     5041 tgcaaccgcc aataatccgt ttgctttcaa gcctgttttg caatgggtga taaaagcgtc
     5101 gggttgatga aaccattgca cggcagatgc gcttgcgatt aagtcaaatt gtcgttgaaa
     5161 aggaaagttt tccgcatcgc cgcaataaaa atcaaaggat tgcggcagtt tttcagccag
     5221 ttggggctgc acatcgcaca aatcattaaa taaccaataa ttcgctgaaa tctgtttttg
     5281 cagcaaggca ctcaacattc ctgagccaca gcccaattcc aacacgtttt ccaatggcat
     5341 atccggcaaa taatcttgca aatgcgccat taaattaatc gtcatttttt gttggattaa
     5401 ggcgtgccgg tcataatcgt ttaatgcttt ttggaaagcc tgccgaatgc gcgatttatt
     5461 tatggcagtc agtgattcca tagtgccgac caatgggtga atcttgaaaa caggtaatgt
     5521 ccgccgtcaa tttcccgaac ggtgcaacgc ggtgtccaat atcggtgctg attggcaggc
     5581 ataaaaattt tatcgcccga tccgaccaag gcatttgtcc agcggataag atctgtacac
     5641 ctatcttgcc cgatcatctt aaaaagtgag gtaagttctt gatgaatttc gtcaaacggg
     5701 cgggcgggaa attgttggta atcttcaaaa gatgctttat cgccacagat tctgcgttca
     5761 aattttaaac gggtatcttc cgtgaggttt tccaatgtgc ctttaaaaac ggcgaaaggg
     5821 ataccgaaat tatcatcgca aggcaaacct gtgccattca ctgccgttgc ggattttaat
     5881 cttattcctt gcaatgccct ctctgccgcc caaacgccca ttgaccacgc caccaaacgg
     5941 atgtgccgat aggcggaaaa atcaaaatcc aaatttacat cttgataatc atagcaaatc
     6001 aataaatcgt gattttccgg caaaatcaaa tgatttacag catcgggcgg cgttccccaa
     6061 cctgcaaaat acaggattaa atgtccgcct tgatgattgt aaaattttgt tttcatatca
     6121 tatccttaca ggcacgccgc aaactgccgc acttcatccg ttgtcatatc tgccgttaaa
     6181 gacaggcgga ttctggatgt gtttttgggt actgtcggcg gtctgatggg caggcaataa
     6241 taaccctgcc tttgcaggta ttccgctttg gcaagggcgg cttcattccc gcctaaaata
     6301 taggggacga tgcaggtttg gctcggcatt atttgcgtcc gatgcgccac ttcccgccgt
     6361 aaaaatgcac ttaactgctc aagatggctt ctttcttttg agaattgcgg caatcgttca
     6421 aaaataaaat aagtccaagc cacattaaac ggcggcaatg cggttgaaaa aatcaatggg
     6481 cgcatttgat taatcaaaca ttctttcaat acttggttgc agacggcata cgcccccacc
     6541 gaggctaagg ctttaccgaa agtgccgacc aataaatcaa tctcggcaat cagattatcc
     6601 cgttcggcaa tccccaatcc gttttgccca taaacaccga ttgcgtgggc ttcatccaca
     6661 taaagataag tattgggaaa ctgttttttt aattggacaa gctgtttcaa atccgccaca
     6721 tcgccgtcca tactgaaaac agattcggta acgataaaag tgcggtcaaa ttttccgacg
     6781 tttttttcaa gcagattttt caaatgttca taatcattat gacgataacg gaaaaacgca
     6841 caccggctca aacggatgcc gtcaatcata ctggcgtgaa caaatttatc tgccaaaatc
     6901 aaacttttcg tcgtcgtcaa agcaggcaaa ataccgagat tggcgtgata gccgctgttg
     6961 aacaataacg cgctttcccg ttggaaacgt tgtgcgacaa gctcttccaa atcggtataa
     7021 ataggaaagt tgcccgttaa taaacgcgat gaagaactgg taaaagaggg aaaattaccg
     7081 ccgtattgct gcaaaaaaga ccggcgcaag ttttcatctg atgccaaacc caaataatca
     7141 ttagacgaca tattcagcat tttgcggttt tcccgcgtaa tataccgccc ttgatgaatc
     7201 aaatccggaa tcgaacgata ttggttttgc gcgccgagtt gttcaagctg ttgtttaaaa
     7261 accttcatta tgatgtaaat attcctgagt taaagcctga accaacccag catcaaacaa
     7321 tcaagtaatg cccttttaat aaaaaccgtt ttgccgccga cctttgccac acccctgcct
     7381 tcataatcca aggcggaaat ttccgcgaca tttgtttccg ttgccattac ccaatccgtc
     7441 cgcactgtac cgaagcgcat attttcgcac aaattggtac ggtttcaggt atgatttgcc
     7501 gaaaacctat cggacacaaa ccatattttg atatgaataa aacaatctgc cgcactgctg
     7561 cactattgat aagcggtttt tcatacgcaa acaccgtcat tcccgatgtc tcccccgtcg
     7621 cacaaggtca acatgtcttc attaacatcc ctcagcaacg cctgttcctc tacaccgacg
     7681 gcaaactgac caaggtttat cccgttgcag taggtcgggc gatgacgcaa accaatctag
     7741 gcgaacataa aatcggtgcg aaagcctata accctgtttg gtacatcccc aaatccatac
     7801 agaaagaacg cggcgacggc gtaaaaacca tagccgccgg cccggacaac cctttggggc
     7861 cggtttttgt ccgcttaggc gaccctaaac tcggtttggg catacacggg accaatgcgc
     7921 cggccagcgt ccccggggtt cggagtcacg gctgcgtccg catgaaatcg cccgacgcgc
     7981 tcgagtttgc caaaaccatc gccagcggct cgcccgcctc cgtcatctat caaatggcgg
     8041 gtctcaatga agatgcggat cgcaacctgt ggcttgccgc cttccgcgac ccttacggta
     8101 agaacaacct tgacatcgcc tctctgaaaa aaagtattgc gcaatgggca aaaacacagg
     8161 gtaaaaccat cgcgcccgag aaagtcgatg ctgtactcaa agaccgcacc ggatcggccg
     8221 tctgcctgac ctgcggcaaa aacggcaaga tgaagatgcc gctcaaatcg ctggcgtgga
     8281 tacagggttc ttcctcatac agccaagctg aagtcattga acaaactgag gaaaccaact
     8341 ctgccgaaat atccgagaca cgcacgcccg aagtgcctga tgtacacacg cccgaggcac
     8401 aaccgcattt aaatacccaa tccgacggca cgccgactgc ctataccgaa ccggctgccg
     8461 attcatcgcc gcaagtagaa acacctgatc aggctgcttc cgagccggtt gatgtattat
     8521 tttcaataga tgtgatacgg cagggaaatt tgcgtttagg taattgaata accttctgat
     8581 tatttaatgc ttatgtttat cagaagttga taggcggttt ggtttttgtt tggcttttcc
     8641 tacaccgccg cctgccgctt tctgcaacat tcaagcgcac aaatatgcca tctgaaggct
     8701 ttagacggca tatttcacga taatagtcgc ccaatcaaat aaacacagat tggaaattta
     8761 ttttattttt cccttaccaa taccccagaa ctttccacca aatgctgccg ataacgaaaa
     8821 aaatcagaaa attgaccacg ctcatgataa aacccgcctt ccaccattct cccattgtgg
     8881 tgtagcccga accgaaaatc acaggcgaag taccggtcgc ataatgagtg agggtcatca
     8941 taatgttgga tgcggccgcc atcatcagcg cggtcggcat cgccggggca ttcagtgaaa
     9001 cggcagcagc gaaaaatgcg ccgaacatag cggtaatatg tgcagtagta ctggcaaaca
     9061 tataatgcgc atacatataa gcaagcacga ggattacgcc cgcagccgtg ccgctaacgc
     9121 ccaaaccgcc gacactttcc gccaacactc cggagaacca tttaatcagt ccgagtttat
     9181 ttaaaaatgc agccatcata atcaatgcgc caaaccaaat aatcgtatcc cacgcgcttt
     9241 tttctttcaa aacatcgtcc caagtcaata caccggaaag caaaagcagg cttaatccga
     9301 taaatgcggt ggcggtggcg ttgatactaa aagcgtgatt gccggtaata agggcgggaa
     9361 catctgccca caacagcaac aagataccga aaatgaccgc cataatgatt tcgtctgccg
     9421 acattttacc catctccctc agacggtctt tggcaaattg aacggcattg ggcgtttctt
     9481 taatttcagg cggatacaaa aaatataaaa tcaaaggcat aacgaaaaag gcgataacgc
     9541 cgggaacagc cattgcccac gcccacgccc cccaagaaag acggaaacta ctgcctaaat
     9601 tttcggcaat caagttgacg attaaagggt tgggggcagt tgcagtaata aacatagccg
     9661 acgaaatggg attggaatga tagttgacca aagccaaata tttacccatc ttgccttctg
     9721 tgccttttgc gggattggag ccgtaactgc cggcaatcga ctgcataatc ggatgtataa
     9781 tgccgccgcc gcgcgcggta ttggaagggg taacgggagc cagcagcagt tcggaaagag
     9841 cgagactgta accgatgccc agcgtttttc ttccaaaaac ggcgataaac aaatatccga
     9901 tacgcatccc cagccctgtt ttgagcaaac cgcgcgaaat cataactgcg atggcaatca
     9961 gccaaatcaa cggattggcg aacgcactca acgcatcgct catcgccgca cccggtttgt
    10021 cggcggttac gccggttact gcgaccaacc cgacggcaat aatcgacagc gcacccaacg
    10081 gcatggcctt gccgataatg gcggcaatca caccgataaa catggccagc agcgtccaag
    10141 cctgaggctt gaccccgtcg ggtacgggca gtgccaaaac caaggcgcac aatactgcgg
    10201 caatggcgag gggtatcggt ttgaaaccca atttcatcat attgacctcc gtaaaaaaga
    10261 ccgtcccgaa aaatcggaaa aataatattt aactaattgt tttataatat atattccgat
    10321 atttcaccgt ctttccgata tgcggctccg ggcaactttt gtttcagtat ttgaattttc
    10381 attagactga atacgccgtt tgaacggcac ggcgaaaacc cgggggatgc cggacgttca
    10441 gtcctttttc gcaccttgaa ggtaaagcat ttccaaggca attgtggcac cggccaaagc
    10501 ggtaatgtcg gattggtcgt aagagggggc aacttctaca acatccatac cgacgatgtc
    10561 gagatccgtc agcccacgta ggatttttaa tgccctgtcg ctgctcaagc cgccgcatac
    10621 gggcgtaccg gtcccagggg cgaacgacgg gtccaggcag tcgatgtcga aagtcaggta
    10681 aacgggcata ttgccgacgg tttctttgat tttacggacg gtctcttcaa cactgtcttc
    10741 attgacttgg ggggcggtca acacagtaaa aggcaatttt ttactgtgtt cggtacgtat
    10801 gccgatttgt acggaacggg acgggtcgat gaggccttcc ttgggggcgg tatagaacat
    10861 cgtaccgtgg tcgtattcgc tgccgttgtc gtaggtgtcg gtgtgcgcgt caaaatgaat
    10921 cagtgcgagt ttgccgaaat agcgggcgtg ggcgcgcaac aacggtaggg taatgaaatg
    10981 gtcgccgccc aaactcaaac agcgtttgcc ggaagaaagt aatttgccgg cgtgcgcttc
    11041 cattttttcg acaaaatccc tgctgtcgcc aaaagaaaaa accaagtcgc cgcaatcaat
    11101 aatgttcagg cgttcgcgca catcaaatgt ccatggaaac ctgcggtgct cccaagcgag
    11161 gttgacggag gcgcgccgga tggcttcagg accgaaacgc gcgccggaac gccctgaaac
    11221 cgccatatca taaggcacgc cggtaataac ccaatcggca tgactttcat acggcataaa
    11281 attaagcggc aggcgcaaaa acccgaaatt attggaaacg agggagttgt cggtttgtcc
    11341 tgccagtgtg ctgtattgca tcgtaatgat tccttgtaat tggtttcaat cggtcgtgat
    11401 gattggtgtt tgagtaagaa aatcgggctt cagacgacat atccgatgcc ttgatgcgtc
    11461 tattcgtctt ccaaataggt ataaccatta agccccgctt cgagttcttt taagaaagac
    11521 atagcctgcg aggcaggaag gtctgaatgt tcgatttgtt cgcgatagcg tttcatcagc
    11581 tctttcggat cttgataaac gtattcgagc atatcggcaa cggtgtttcc ttcatcgtaa
    11641 tcgatgacgg taaattgtcc gtcttcccct acaacaacat cggcagtggc agtgtcgccg
    11701 aaaagattgt gcatattgcc gagtatttcc tgatatgctc ccaccataaa aaagcctaaa
    11761 agcggcggct cttcttcggg ataatcaggc ataggcatcg taccggcgat gccgtcgccg
    11821 tcgatgtagt ggtcaatcgt accgtctgaa tcgcaggtaa tgtccaacaa cacggcgcgg
    11881 cgcgcaatcg gttcattcaa accggtaatg ggacaaacag ggaaaagttg atctatgccc
    11941 caagcatcgg gcaaagattg gaagagtgag aaattgacat acagcttatc ggcaaaacgt
    12001 tcttgcaatt cgtcaataat ggttcggtga gaccggtgtt tttcattaaa caattcgccg
    12061 acttcatgac agatatttaa atacagttgc tccgcccacg cacgttgcgc caaactcaac
    12121 agcccgacat tatactgatt atgcacatcg gcaagatcaa actgcccttc gtgtatccag
    12181 ctgcgtaagg aacgtttttc ccgcgaggcg gaaatatccg tccaagtttc ccacatactg
    12241 tgcaacacac gcggtgcttc gggcgatggc gcatccagcc ggcgcggttt gtaacgttca
    12301 acgcctataa cattagcaac caaaacggcg tgatgtgcgg taatgccgcg cccgctctcg
    12361 gtgatgattg tcggatgcgg cagcccgtgt tcgagacaag cctggctgat gccccatacg
    12421 actgtggcgg catattcgtt gaggctgtaa ttaacggaac aatccgattg tgtgcggttt
    12481 ccttcgtaat ccacgccaag cccgccgcct acatcaaaac agcggatatt tacccccagt
    12541 ttgtgcaact caacataaaa ccgagccgat tcgtgtacac ctgtggcaac atcacggatg
    12601 ttcccaagct gcgagcccaa atggaaatgc aaaagctgca ggcagtccag cctgtttttt
    12661 tgtttcaaaa tatcgaccag ttgcaaaact tgggaagccg acaagccgaa ttttgatttt
    12721 tccccacccg aagactgcca ttttcccgaa ccttgggaag ccagtctggc gcgcacaccc
    12781 aaacggggct tgatgccgag tttttccgcc tcttccaata ccatttgtat ttcggacagc
    12841 ttctcaatca ccaaataaac ctgatgcccc agtttttcgc ccatcaaggc gaaacggata
    12901 tattcacggt ctttatagcc gttgcagacg attaatgttt gccgggtgcc ggcgtgtgcc
    12961 aaaaccgcca tcagttcggc tttagaacca gcttccaaac catgcggttg tccgcttgac
    13021 ataagcgatt cgatgacgcg gcggtgttgg ttgaccttga tagggtaaac caaacaataa
    13081 ccgcccttat agccgcactc ttcccgtgcc gtctgaaagg cgcggttaat gtcgcggagg
    13141 cggtgttcga ggatttgcgg aaaacaaaac aaaacaggca ggcgcgcctg atgtttttgt
    13201 tgcacggctt cagtcagttt ttgcagtgaa acagtttgat tgtgttgcga gggattgggg
    13261 cggacgatga tttcgccgga atcgtcaaca tcataataac ctatgcccca atgattaatg
    13321 ttgcacactt cacggatggt aaggataggc ataataaacc tgctccgtct gtcgtgttga
    13381 aaaggaatga ttataacaaa tcagcgtgaa atgtcatttt tttaataaga aaagcctgcc
    13441 tcatacctga tgagaaacag gcaaaatgcc gtctgaacgc ttcagacggc attttggttc
    13501 agctttccat caaaggaatc agcgatcgag ctgctctttg atgattttca ggtcggggta
    13561 agacaacacg atgtcgtatt cgcggccgtc tttataggct tccacttcca aaacaggttt
    13621 gccccaatgg tcgtcggcat cgacatcgtg aacctgataa ccgcgctgtt ccaacatttt
    13681 cacggctttt gtgcggtttt gttcaaaatg gggatcgccg taaatctgac gctcggcaga
    13741 gtcgccggca aatgcggctg cggcactcag ggaaacaacg gcgaccaata acagtttttt
    13801 cattttcagt ccttttttta tcggttgatt gaacaagatg tgtttttcaa taccgccatt
    13861 aaaacacagc aaaattaggt ttgaattaga gggaagtcaa gaagcgtaaa tgccgtctga
    13921 aaaaaacaga gccgtcaaac ggctctgttt tccttatgct tctttggttt cagccgcctt
    13981 ttgacgcagg cgcaaactca attcgcgcaa ctgcttgtcg tccacgctgt tgggcgcgtt
    14041 ggtcagcagg cattgggcgc gttgtgtttt cgggaaggca atcacgtcgc ggatagattc
    14101 ggcgccggtc atcagggtaa ccaaacggtc gaggccgaat gcaaggccgc cgtgaggagg
    14161 cgcaccgaat ttcaggttgt ccaagaggaa gccgaatttc tcttgttgct cttcagggct
    14221 gattttcagc gcggcaaaca ctttctcttg tacgtctgca cggtggatac ggatagagcc
    14281 gccgccgatt tcccagccgt tcaataccat gtcgtaggca cgggccaggc agtttgcagg
    14341 gtcggaaacc atcaggtctt catgaccttc tttaggcgcg gtaaacggat ggtgtacggc
    14401 aacgtagcgg tcggcttctt cgtcgtattc gaacattggg aaatcgacaa cccacaaagg
    14461 tttccattcg tctgtgaagt agccgttatc tttgccgtgt tccaagccga ctttgatacg
    14521 caatgcgccg atggcttcgt tcacaacttt ggttttgtct gcaccgaaga agataatatc
    14581 gccgttttgt gcgccggtac gcgcgatgat ttccttcagg gcattctcag acaggaattt
    14641 tacgattgga gattgcaggc cgctgtcttc gccgttggag aggttgccca catcatttac
    14701 tttgatgtat gccagacctt tcgcaccgta gatgccgaca aatttagtgt attcgtcgat
    14761 ttctttgcgg ctgaatttcg taccgttcgg cacacgcagg gcaaccacgc ggccgccttt
    14821 catgtcggct gcgccacgga agactttgaa ttcttccgtt ttcatcaggt cggtcaactc
    14881 ggtgaatttc aagttgatac gcatgtccgg tttgtcagag ccgtagtaga acatggcttc
    14941 agagtaaggc atgcgtggga agtcgcccaa gtccacgccc agcgcgtctt tgaagacttg
    15001 tttcgccata ccttcggtga tgtccatgat ttcatcctcg tttaagaacg aggtttccaa
    15061 gtcgatttgc gtgaattcag gctgacggtc ggcacgcaag tcttcgtcgc ggaagcactt
    15121 ggtgatttgg tagtaacggt cgaaacccgc caccatcaac agttgtttga acaattgcgg
    15181 cgattgcggc agcgcgaaga actcgcccgg atgaacgcgg ctcggcacga ggtagtcgcg
    15241 cgcgccttcg ggcgtggagc gggtcagcat cggggtttca atgtcgatga aaccttgcgc
    15301 gtccaagtag cggcgaacgc ccatagcgac ttggtaacgc aggcgcaggt tgcgctgcat
    15361 caccggacgg cgcaggtcga taacgcggtt ggtcaggcga acgttttcgc tgatgttttc
    15421 gtcgtcgatt tggaacggag gcgtagcggc agcgttcaac acttcgattt ctttggcaag
    15481 gatttcgatt ttgccggaaa tcattttgtc gttggtcgtg ccttcgggac ggttgcgtac
    15541 gcggccggta atgctcaaaa cgtattcgtt gcgggaggaa tcggcagcgg caaacgcttc
    15601 gggcgtgtcg ggatcgatca cgacttggac gatgccttcg cggtcgcgca ggtcgataaa
    15661 aatcacaccg ccatggtcgc gtcgacggtg tacccagcct ttgacggtaa cggtttggtc
    15721 taagtattgc tcgctaatca gaccgcaata gttggtacgc ataaaatcac cttttattga
    15781 tttaaactga aaacagaaaa tgccgtctga acggcggctt tattgttgtt cgggcaaatc
    15841 cgccttttca gacggcatag gtcctgccaa tgttttgacg ggcaggtcgt cagggatgac
    15901 catacccagc gaaatcacat atttcaacgc ttcgtccacg ctcatatcga gttcgcgcac
    15961 atcgcttttc tttaccataa tatagtaacc gccggtcgga ttcggcgtgg tcggaacata
    16021 cacggaaaga taatcgccgt ccttcggcaa tgcggcctta accgcattcg acacctgacc
    16081 ggacacgaat gcgattgtcc aaatacccga ttggggaaac ggcacgagta ctggtgtttt
    16141 aaacgaacgg ctgctgtcgg acagcaacga ttcggatact tttttcacac tcgaatagat
    16201 ggacttcaca accggaatcc gccccaacaa gctgtcccac gcggcaagaa tctgccggcc
    16261 caatacgttt gcggcaaaca atccggttac aaacaatacg gcaatggcaa cgataacgcc
    16321 cagccccggg atattaaacc ccaaaacata ttgcggccgc cattgcttcg gcagcaggtt
    16381 gacgagctga tcggacgcgg aaacgatata ggaaaccacc caaaccgtta ccgcaatcgg
    16441 cagccaaacc aaaatgcccg taatcagata tttttttaac gccttggcag ctttaccgcc
    16501 ttcggccgca ggttccgtca tcttgcttga ttccgacaaa gtccgtacaa accgcacatt
    16561 atacgcgttt gcccggattc aaacgaaatt tttatcccgc cccgccaaac cgccggcggc
    16621 ttcagacgga acggcaactt gatataccgt ctgaacacgc ggttcagatg ccgtccaagt
    16681 cgttgaacat caacccgata ccgataccgt tctgcttgtg gttgtagtcg atcaggctct
    16741 cgccgtaacc gtggaatccg cgtaccacgc ctttgagttt gcccttaatc ggaaacgtgt
    16801 aggcggcttc aatcgcgccg tagcccgttt tggggttgta gcgcaatacg gaatacacat
    16861 tctgcctgtc gttcaggcgg tactgcagct tcacgtcgcc ataccccata tagtcggcaa
    16921 tatcgggatt gtcgttttta tcgccgctct gatcgaacgc acgcacccac acgcgcggaa
    16981 tcaccgtcaa tttgccccat tccatgcctg ccatggcgta aatcctgttc cacgaacgcg
    17041 attcgggacg gctctgtccg ttggactggt ggacaaaacc cgcaccgagc atacgcagcc
    17101 tgccgccgaa cggcaaatcc gccttcacag gctgggtcag gaaaatttca ggtttgtaat
    17161 ccgtattgcg gaacggcgcg gatttcctgc cttggttgta aatctgccaa tcggatcttt
    17221 gggtgtagcc gaaccacaga tccgcgcggg ttttaaacaa atcttcggca attttgcttt
    17281 tgaacgaaac ctgcaatttg gtttccgcac gtttctgctg tccgaatttt tcctgtacag
    17341 tcgtaccgcg cgtcggcgaa ctcggggcat agttgggcga attgttgtac cagagcggca
    17401 taaggtacat cggattgtgt tcgcgtacgc ccaacagccc gcgcaaatcg tttttgtcca
    17461 agtcgtacat caggctcaaa ggcgtataga tgtcggcggt ttcgcccgca ctgtcggcag
    17521 gaagcgcatc cccgcctttt tcaacaacaa tgaccgcctc gcccttatcc aggctgctgc
    17581 ggacggtttc cgtcagattg agtacagctt tcgactcctg cccttcctgt cctgccgaag
    17641 acggaagctg tgccgcaaaa atcctgtcgt aacacgccaa acgcgtaaca ttgtccgtca
    17701 aagcggcgca ttgcagcgcg gtctctccaa aagcggatgc catcggcaac agtcctgtca
    17761 aaagaatata gcgcatattc cgtgtattca tctccgcccc cattgtcggc atattggttt
    17821 tcaaacggca ttttatagcg gattcggata aaaaaccgca ccctttccgc catttcggga
    17881 tttagccccc gtaatacaga aaaccccgaa accgtcaggc ttcagggttt tccgcttatc
    17941 gcgtatcaac cgccttggcg gttttgcaaa aatcaagcca gtgcttttac ttttgcagac
    18001 agacggcttt tgtggcgtgc cgctttgttt ttgtggaaca cgcccttgtc ggcgatgcgg
    18061 tcgatgactt tgacggactc ttggtaaacc gcttgtgcgg cagctttatc gcctgcttcg
    18121 actgctttca atactttttt cactgcagtg cggaatgcgg tacgcaggct agcgttgtgg
    18181 gcgcgttgtt tgacggactg gcgggcacgt ttgcgtgctt gtgcgctgtt tgccatattg
    18241 gaatctcctg gaagaaaaat aaattctgta aacgcgcaat tttaaagggg gtttacatta
    18301 tatgcaagcc ttttctctct atccgcccgt cggacaccct gacagcgcaa aaaaacggca
    18361 aaatcgtgcg gacgttttcc ccctcttttg aaaacagggt aattttttag ggaaatcagt
    18421 ccaatatcac tttgagtttg cacaaattta ctttacaatg cccaaacctt gcgccggggt
    18481 aacgatgggg cgcggggatt tctttttttc caacctcttt catcaggaat ctgcccgtat
    18541 gaaaaaatcc gtattagccg ttttggccgc gctgtctctg gcagcctgcg gcggcagcga
    18601 aaaaaacgcc gtgcaacctc aagcagacgc tgcgtctgct gccaatgccg aagccgctgc
    18661 caccgatact ctgaacatct acaactggtc gaactatgtt gacgagagta cggtcgaaga
    18721 ctttaaaaaa gccaacaatc tgaagctgac ttacgacttg tacgaaaaca acgaaacgct
    18781 ggaagccaaa atgctgaccg gcaaatccgg ttacgatttg gttgtgccgg gcatcgcctt
    18841 cctgccgcgc caaatcgagg cgggcgcgta tcaaaaagtc aacaaagacc tgattcccaa
    18901 ctataaaaac atcgatcccg aactcttgaa aatgctggaa accgccgacc caggcaacca
    18961 gtatgccgtc ccctatttct ccggcgtgaa cacgattgcg attacggcga aaggcaaaga
    19021 gcttttaggc ggcaagctgc ccgaaaacgg ctgggatttg ctgttcaaac ccgaatacac
    19081 ccacaagctg aaatcctgcg gcatcgccct gtgggacacc ccgagcgaaa tgttcccgat
    19141 tttgctgaac tacttgggca aagaccccaa aggctcgaat cctgaagatt tgaaggcggc
    19201 ggcggaagtg ttgaagtcta tccgtccgga tgtcaaacgt ttcagcccgt ccatcatcga
    19261 cgagctggcg cgcggcgaca tctgcctggc ggcaggcaac ggcggcgatt tgaacttggc
    19321 gaaagcacgt tccgaagaag tgaaaaacaa cgtcggcatc gaagtgctga atccgaaagg
    19381 catgggcttc tggattgagt cttggctgat tcccgccgat gcgaaaaacg tcgccaatgc
    19441 ccacaaatac atcaactaca cgctcgaccc cgaaatcgcg gcgaaaaacg gcatcgccgt
    19501 aaccttcgcc cccgccagca aaccggcgcg cgaaaaaatg cctgccgagc tggtgaacac
    19561 ccgttccatc ttcccgaacg agcaggatat gaaagacggt ttcgtgatgc ctcaaatgag
    19621 tacggatgcg aaaaaactgt cggtcagcct gtggcagaaa atcaaagtcg gcaccaactg
    19681 atttgaagca ttaaaaatgc cgtccgaaca tcgttcggac ggcattttat attggattga
    19741 aatagaaccg tcgctcccac ggtcaggatt tcagattgcg gacatctgtc agaaaagaca
    19801 aaaaaccttc cgccgttatt ccctacaggc gagaatccga tccgttgaaa ttcggttgtt
    19861 ttaaataaat tcttgcagct ttgattttct gtttttccga taacgccgta actttgaaac
    19921 gcgaaagcgg gaatccggtc cgttgggatt ttgcaacttc aaatcaatcc gcaaactgaa
    19981 atcccgtcat tcccgcgcag tcgtgaatcc gaacgcgtcc gcacggaaac ctgcat
//
LOCUS       DAXHNP010000020        19743 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.020, whole genome shotgun sequence.
ACCESSION   DAXHNP010000020 DAXHNP010000000
VERSION     DAXHNP010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19743
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.020"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            179..415
                     /locus_tag="ACFM5C_000537"
     CDS             179..415
                     /locus_tag="ACFM5C_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068291.1"
                     /translation="MRILDIFKNPATGNVSHSKLWANVACAAGTFKFVMLPDPSAEIW
                     AVYLGIVGGYAVARSFVSVKRQEVENESRETAGE"
     gene            387..806
                     /locus_tag="ACFM5C_000538"
     CDS             387..806
                     /locus_tag="ACFM5C_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068292.1"
                     /translation="MNLVKLLANNWQPIAIIALVGTGLAVSHHQGYKAAFAKQQAVID
                     KMEHDKAQALLLSAQNYARELELARAEAKKYEVKAHAVGMALAKKQAEVSRLKTENKK
                     EIENVLTQDRKNAGGGCIDGFGHHGLQLYKRALGYGN"
     gene            703..1008
                     /locus_tag="ACFM5C_000539"
     CDS             703..1008
                     /locus_tag="ACFM5C_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068293.1"
                     /translation="MSLLKTVKMQAAVVLTALAITACSSTSAPSATEIKVVEKAVMPT
                     PPAALMVAPVRPNPPKDGKTATLLEHAAEFGGYVAELENQNQAWRDWAGNHSRKVGN"
     gene            complement(1053..1223)
                     /locus_tag="ACFM5C_000540"
     CDS             complement(1053..1223)
                     /locus_tag="ACFM5C_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HFC6068294.1"
                     /translation="MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLL
                     KSTTAATPVKEV"
     gene            1236..1454
                     /locus_tag="ACFM5C_000541"
     CDS             1236..1454
                     /locus_tag="ACFM5C_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068295.1"
                     /translation="MNEYTFSYRFNGKSWSLSIWADNPEEARAKFRAARENAHYDGEV
                     VAKVYTFVNISWVKKLYKRTKYLMGIKE"
     gene            1451..1789
                     /locus_tag="ACFM5C_000542"
     CDS             1451..1789
                     /locus_tag="ACFM5C_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068296.1"
                     /translation="MTYRELVERQLAVRHADLELGLSRAREQEPFVIHVSDLLDKAGI
                     EYAVRMDKDFQTTFHLEYPITNYDTFKRAVWQTLGAYYCVCNDGDGLEIASNRPDGYA
                     VRIVFGDVPV"
     gene            1801..2067
                     /locus_tag="ACFM5C_000543"
     CDS             1801..2067
                     /locus_tag="ACFM5C_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068297.1"
                     /translation="MDFEFGFRTLWPIATAAFWFWVNGISGRLKEADKRIDDLKEELH
                     AVKLSYHTKADAKADSTNIAAALERIENKLEKVNEKLDRKADKS"
     gene            2064..2261
                     /locus_tag="ACFM5C_000544"
     CDS             2064..2261
                     /locus_tag="ACFM5C_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068298.1"
                     /translation="MSDPILEALARIENKTDQTLKNQKEMQAEIAQIRQDTKRTAITF
                     GALGGGVITVGWELLKAKMGL"
     gene            2264..2770
                     /locus_tag="ACFM5C_000545"
     CDS             2264..2770
                     /locus_tag="ACFM5C_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HFC6068299.1"
                     /translation="MAHPQEIREKLRRLYVSGEQTLETAALMCEIPQTTARAWKRADK
                     EKGDDWDKMRAAYTLAGGGIEDLSRAMLAGFMVQYNSTMTMLQDSSTEDLPPSDRAKL
                     LASLADAFTKTVSANARVMPETSKLATALELIEFLMAFVQEKHPKHLPAFVEVLEPFG
                     AEVEKKFG"
     gene            complement(2767..3279)
                     /locus_tag="ACFM5C_000546"
     CDS             complement(2767..3279)
                     /locus_tag="ACFM5C_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068300.1"
                     /translation="MTGFISNAFIGLKEAGSLLKGFNQLKTEAEVAQKTIELNQIIAG
                     IQTDLFEAQSSYTAAISRIDELEKELVAVKNWSTEKQRYQLYELAPGSFVYRLKTEMA
                     NSEPIHDICPQCYEQGVKSILQFNGYEGAFHKYSCSRCQTIILGERLKSDVEVFSVGG
                     SRYGRLIDGY"
     gene            3291..4913
                     /gene="terL"
                     /locus_tag="ACFM5C_000547"
     CDS             3291..4913
                     /gene="terL"
                     /locus_tag="ACFM5C_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HFC6068301.1"
                     /translation="MKTKEFLKSLAELAASLRQVIEAEVDGFDASPKAVSARRAKVFD
                     PIGGYEYFVNTYFPHYIRSPEKSELHAFLFSRLPEIIRSPKGENEAVGAPRGEGKSTQ
                     VTQLFTLWCIVTGQKHYAVIVMDSIDQAYPMLEAIKAELEFNPRLKTDFPEVCGQGRV
                     WQAGTIVTANDVKVQVAGSGKKLRGLRHGPYRPDLTVLDDIENDEQVRNPEQRDKLNA
                     WLTKTVLPLGGVGQKYDVIYIGTILHYDSVLNRTLNNPFWRGVKFKAMKRWPDRMDLW
                     DRWEELFRNDGETVAEAFYQANKDEMERGAVTSWAARGVLALMKIRARDGHATFDSEY
                     QNDPVSGEDAPFAKSMKFWNDLPSDLVYFGALDPSLGKAGASRDPSAIVIGGYQRSMG
                     RLYVVEAQIKKRLPDLIIEDVICLHRQYRCKLWFVETVQFQEFLKDELVKRSAARGIP
                     VPARAVKPVSDKLLRIETLQPHMANGLILLNESQQTLIQQFRHFPKADHDDGPDAVHM
                     LWSGAVANCVPIEWQSPTDNDFGNEIKSKWSR"
     gene            4913..6481
                     /locus_tag="ACFM5C_000548"
     CDS             4913..6481
                     /locus_tag="ACFM5C_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HFC6068302.1"
                     /translation="MAKKDNKTKIQKPEAALQTDAAQITATGRVIAEHPSNFITPQKM
                     RALFEDAESGDIRAQHELFADIEERDSDIAANMGTRKRALLTLNWRVAPPRNATPEEE
                     KLSDQAYEMMDSLPTLEDLIMDLMDAVGHGFSALEVEWVFSDGLYLPRNFIHRPQSWF
                     KWDKDNGLLLRTRENPEGEALWPLGWVVHTQKSRSVQQARNGLFRTLSWLYMFKHYAV
                     HDFAEFLELYGMPIRIGKYGAGATKEEKNTLLRAVAEIGHNAAGIMPEGMEIELHNAA
                     SGTMATSNPFLQMADWCEKSAARLILGQTLTSGADGKSSTNALGNIHNEVRRDLLVSD
                     AKQVAQTITSQIIGPFLQINYPNADPNRVPKFEFDTREPKDIAVFADAIPKLVDVGVQ
                     IPESWVRDKLVIPDVQEGEAVLVRQVPDNPINRTALAALSAHTVPSKATGRHQEILDG
                     ALDDALVEPDFNSQLNPMVRQAVAALNACNSYEEADAALNALYPNLDNAKLRTYMQQA
                     LFISDILGQDHARA"
     gene            6468..7793
                     /locus_tag="ACFM5C_000549"
     CDS             6468..7793
                     /locus_tag="ACFM5C_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HFC6068303.1"
                     /translation="MPAPDLGFALSLPPKKAIEWLESKKVTAESYRNLTASEIAKVYT
                     IARMTDLDMLNDIKTSMVESAKSGQSFDDWRKGILNLLGNKGWLHPNGHNGKDIIDPA
                     TGEVFGSPRRLETIYRTNMQTAYNAGQYQGYMANIDARPYWMYDAVGDSRTRPAHSAI
                     DGLVYRYDDPFWATFYPPNGYNCRCSVIALSERDVERQGRIVGQSTADNLVETHKIYN
                     KKGDTYLTLAYKAPDGSLYTTDRGFDYNAGRMNYRPDLDKYDRALAHQFAKAEMGGAD
                     FKTSFKQLEKEFYEVKQRLDIDGKPDKEQKIKIRNALSRQLKFAAGVLSKETQELAGM
                     TRATVWLSDDTLVKQVDSREGQSFGTDLYAMLPDLIHEPEYIFYDKSRGKESFVLLGK
                     PLEGNEKYRLMAVLKYLPQYDSIFLDSFRRADEKEIVKSKKRYEMKKGY"
     gene            7921..8337
                     /locus_tag="ACFM5C_000550"
     CDS             7921..8337
                     /locus_tag="ACFM5C_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HFC6068304.1"
                     /translation="MIDVKIDNIFVVLNQIERLGNGIENRYLLMRRLSETMHTAVKLN
                     FRYAGRPKWLGLKYRDGKPLSDSGRLKDSFSTLSDNDTALVGTNIVYAAIHNFGGMAG
                     RNRKVRIPQREFLTLTDDDKQALMDDVQDYFSGLIP"
     gene            8568..9629
                     /locus_tag="ACFM5C_000551"
     CDS             8568..9629
                     /locus_tag="ACFM5C_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HFC6068305.1"
                     /translation="MSKNAQKTLLAVCSFEVQPKDGRIQLLPYGEFRAVDGRPTDVPA
                     WYLTEENGHDVALLANSSRNQLVVDYEHQTLYKEKNGQPAPAAGWMRWLEFTPKGMFA
                     EVEWTDKAAAAIAAKEYRYISAVFSYDTKGYVSKIFHAALTNFPALDGMDEVLAAASA
                     QILKPETEQNPMKELLQQLFGLPDAGEEELKAALSALVEAKPEGAALSADVFAQLAEK
                     DSRIAALSAQNGTPDLTRYAPVSLVRDLQNQVAALTAEREADKGGELITAALSAGKLL
                     PAQKEWAEGVLKQPGGFAFLSGFIENAQPVAALAGSQTGGKAPDERVAALTAEEAAAA
                     KMLGMSGEEFVKIKESEGK"
     gene            9691..10200
                     /locus_tag="ACFM5C_000552"
                     /pseudo
     CDS             9691..10200
                     /locus_tag="ACFM5C_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217232.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            10190..11335
                     /locus_tag="ACFM5C_000553"
     CDS             10190..11335
                     /locus_tag="ACFM5C_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein"
                     /protein_id="HFC6068306.1"
                     /translation="MQNNSYGYAVSVRVGGKEHRHWERYDIDSDFLIPADSFDFVIGR
                     LGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGSRELSLSGRDLAGFLVDCS
                     APQLNVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALDKIDIEPGETVWQALTHIAN
                     SVGLHPWLEPDGTLVVGGADYSSPPVATLCWSRTDSRCNIERMDIEWDTDNRFSEVTF
                     LAQSHGRSGDSAKHDLKWVYKDPTMTLHRPKTVVVSDADNLAALQKQAKKQLADWRLE
                     GFTLTITVGGHKTRDGVLWQPGQRVHVIDDEHGIDAVFFLMGRRFMLSRMDGTQTELR
                     LKEDGIWTPDAYPKKAEAARKRKGKRKGVSHKGKKGGKKQAETAVFE"
     gene            11332..12000
                     /locus_tag="ACFM5C_000554"
     CDS             11332..12000
                     /locus_tag="ACFM5C_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HFC6068307.1"
                     /translation="MSLSKLAKKTAQTAKNIGETLRTAFRGKITLVVSSEPIQRVQLS
                     GLADETLQDLEHLQEYGFASHPPDGSEAVVIPLGGNTSHGVIVCSQHGSYRIKNLKPG
                     ETAIFNHEGAKIVIKQGKIIEADCDVYRVNCKQYEVNAATDAKFNAPLVETSAVLTAQ
                     GQINGNGGMAVEGGDGATFSGDVNQTGGSFNTDGDVVAGNISLRQHPHTDSIGGKTLP
                     AEPA"
     gene            12101..12448
                     /locus_tag="ACFM5C_000555"
     CDS             12101..12448
                     /locus_tag="ACFM5C_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HFC6068308.1"
                     /translation="MDKELNPSIGDYTGRTVDTLQNAVYIRLMTPLGSWWADKTLGSL
                     LHLLQREKDLQRVSLLAEQYADEALQPIVKSGRADKITVRAEQPHDGRLILHIRVDTA
                     AGGFDYRHEVPVI"
     gene            12462..13517
                     /locus_tag="ACFM5C_000556"
     CDS             12462..13517
                     /locus_tag="ACFM5C_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HFC6068309.1"
                     /translation="MFETPTFEQIRERILRDTKSLWPDADISPDSDHYVHASRLASCA
                     EGQYAHQSWIVRQIFPDTADREYLERHASMRGLRRRNPTTASGTLTVSGIAQSMLSDG
                     LQVRIGQRFYRTTARAVIGSGGTAEIPAIADELGAAANVRDGEAQLMAAPAGVSTECR
                     LTVQGGTDRESDASLLARLLEIIRRPPAGGNRYDYKNWALSVDGVTSAYVYPLRRGLG
                     TVDIAITSADGVPSEETVRRVQAYIDEMRPVTAKNALVLKPTVTAVPVTVQVKLDGID
                     LDDAKRRIRTALKEYFDTLIPGDGLTVSQIEAAISNVDGVIDRRLTAPTANRAADTVN
                     RIEWFKAGAINVTEMPS"
     gene            13514..14074
                     /locus_tag="ACFM5C_000557"
     CDS             13514..14074
                     /locus_tag="ACFM5C_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfQ family protein"
                     /protein_id="HFC6068310.1"
                     /translation="MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSV
                     ADAVDPSSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAA
                     GYQIQIDEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLT
                     DYSDAVIESLFNRLKPAHTAIRFTYR"
     gene            14085..16058
                     /locus_tag="ACFM5C_000558"
     CDS             14085..16058
                     /locus_tag="ACFM5C_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyocin knob domain-containing protein"
                     /protein_id="HFC6068311.1"
                     /translation="MHPIETPDKTFHDGDGVSELGTILPAWWLNQVQSELLAVLTAAG
                     IQPDKSQPNQLLAALNRLAVVTTGDQTITGQKTFTAQTQFQSGIHLSANQTNWNGGHK
                     AYIGAAADNAHIVFGDNTLRLHGANNRISYNNHDIFHKANKPRFAEDIKGKPNTLSGY
                     GIGNFKVETFRGDLNTLKTDGIYSLPTAVGSSNLPVENTACHIQVIAGTQPGWCRQLG
                     YPAYTSDVYERHQTSSANDNWSAWKKLNSDGIPAGAIVSFPKAVQNPAGYLKANGTTF
                     AQNTFPDLYRALGNSNRLPDLSRTDIGITAWFPSDQIPTGWLAFDDIRTRVTETAYPE
                     LYRLLTGKYGSIQNVPQAEDRFIRNAGNSLAVGTKQEDEIKRHVHKVFSHWTNHTDTA
                     AVGYEDHNERQRSALVSTWTDGDLNDNGFLTPRSDSKMATGGDENRPKALVLKLCIKA
                     ADTLGEAVFWIKSHGETINAGALDAGTLAQGLQDKADRDHTHTAAQIQGLDEKISTAV
                     AAQFTRQTIGGVDIVRFPDGTMIQTGSYRFTRSGGPIENEVVFPVAFADGNVKCFVSE
                     RHSGRVTGDRRQHNWLFIRAKNHAAAIITNWYEGSCDWMAIGKAASGNAASSPIGPEI
                     PETNEEPQRESGRTSTGPRNRRRRDGLLEALQD"
     gene            complement(16623..16934)
                     /locus_tag="ACFM5C_000559"
     CDS             complement(16623..16934)
                     /locus_tag="ACFM5C_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HFC6068312.1"
                     /translation="MKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQS
                     SITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQRKTFDIAPLFPEPPLSSMQTGAR
                     A"
     gene            complement(16942..17220)
                     /locus_tag="ACFM5C_000560"
     CDS             complement(16942..17220)
                     /locus_tag="ACFM5C_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6068313.1"
                     /translation="MIVSFKHKGLERFFKTGSLSGIQAGHSVKLNLLLTALNAAQTPS
                     DMAVPSWNLHPLKGSLSGHWAVKVNGNWRLTFRFNDGNAEVVDYQDYH"
     gene            17305..17910
                     /locus_tag="ACFM5C_000561"
     CDS             17305..17910
                     /locus_tag="ACFM5C_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068314.1"
                     /translation="MTIYFKNGFYDDTLGSIPEGAVAVRAEEYAALLAGQTQGGQIAA
                     DSDGRPVLTPPRPSEYHEWDGKKWEIGEAAAAARFAEQKTATAFRLAAKADELKNSLL
                     AGYPQVEIDSFYRQEKEALARQADNNAPTPMLAQIAAARGVELDVLIEKVVEKSARLA
                     VAAGAVIGKRQQLEDKLNAIETAPGLDALEKEIEEWTLNIG"
     gene            17889..18185
                     /locus_tag="ACFM5C_000562"
     CDS             17889..18185
                     /locus_tag="ACFM5C_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase UvrD"
                     /protein_id="HFC6068315.1"
                     /translation="MDAKHRLKKYVYHLLVAIDQLFNALTGGAADETLSSRTYRGARL
                     AQKPKTRWKVLYTLINGVFFDRQHCRQAYISELKGRQHDARFNQSRAAGEKGTR"
     gene            18182..18391
                     /locus_tag="ACFM5C_000563"
     CDS             18182..18391
                     /locus_tag="ACFM5C_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068316.1"
                     /translation="MNYFGMVEFLRLMAMVRPPFVFFSGTRSELPTYLDLVAELRLTG
                     WERFAGSQTLTVSSTSTAIQATTTT"
     gene            complement(18561..19643)
                     /locus_tag="ACFM5C_000564"
                     /pseudo
     CDS             complement(18561..19643)
                     /locus_tag="ACFM5C_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743106.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SbmA/BacA-like family transporter"
BASE COUNT         5021 a         5231 c         5523 g         3968 t
ORIGIN      
        1 cgtcgttaat catgggacag gttgagtttt acgaaaagat gattgagctg tggtcgagca
       61 aaagccgtga ggcaagcgaa cgggctgatt tggcggcgtt tgaatttgcg gagggcgaac
      121 tggccaatta tcgggaaatg ctgaaacggc acctgcaaac caaaagtgtg gaatagcaat
      181 gcgtattttg gatattttta aaaacccggc gacaggcaat gtgtcgcact cgaagctgtg
      241 ggcaaacgtc gcctgcgcgg cggggacgtt taaatttgtg atgttgcccg acccgtcggc
      301 ggagatttgg gcggtgtatt tgggcattgt cggcggctat gccgtggcgc gctcgtttgt
      361 cagcgtcaaa cgtcaggagg tcgagaatga atctcgtgaa actgctggcg aataactggc
      421 agccgattgc catcatcgcg cttgtcggca cgggtttggc ggtgtcacac catcaaggct
      481 acaaggcagc ctttgcgaag cagcaggcgg tcatcgacaa gatggagcac gataaggcgc
      541 aagccctgct gttgtcggct caaaactatg cgcgcgaact ggaactggca cgcgcggaag
      601 cgaaaaaata tgaagtcaag gcgcacgctg tcggcatggc tttggcgaaa aaacaggcgg
      661 aagtcagccg tctgaaaacg gaaaataaaa aggaaatcga aaatgtcctt actcaagacc
      721 gtaaaaatgc aggcggcggt tgtattgacg gctttggcca tcacggcttg cagctctaca
      781 agcgcgccct cggctacgga aattaaggtt gtcgaaaagg cggtcatgcc gacaccgcct
      841 gccgcattga tggtcgcgcc ggtacgccca aatccgccga aagacggcaa gacggccacg
      901 ctgttggaac acgccgccga gtttggcggc tatgtggcgg agttggaaaa tcaaaatcag
      961 gcttggcgcg actgggcggg caatcactcc cgcaaagtcg gaaactgaca aaaaagcccg
     1021 cgtagggcgc gggctgaggg tgaaagcgga ttttatacct cttttacagg ggtagcggcg
     1081 gtagtgcttt tcagcaaatc gactgcgtgc tgacagtttt gcttgctggt gtagccttcg
     1141 ccctgagcga tgatttcatg gttggctgct ttcaaacgcc aacggtattc gccttttgcg
     1201 tctttataga tttcaaaata cataaggttt ctcctatgaa tgagtacacg ttttcttacc
     1261 gctttaacgg caagtcctgg tcattgagca tttgggcgga caaccctgaa gaagccaggg
     1321 cgaaatttcg ggctgcacga gaaaatgcgc actatgacgg cgaagttgta gcaaaggttt
     1381 atacatttgt aaatatttcg tgggttaaga aattgtacaa gcggacaaaa tatttaatgg
     1441 gtatcaaaga atgacctacc gtgaattagt tgaacgtcag ttggctgtgc gccatgccga
     1501 tttggaattg ggcttaagcc gcgcacgcga gcaagagccg tttgtcattc atgtttccga
     1561 tctgttggat aaggcaggca ttgagtacgc ggtacgcatg gataaggatt ttcagacgac
     1621 gtttcacctt gaatatccaa ttacgaacta tgacaccttt aaacgtgcgg tttggcaaac
     1681 tttgggggcg tattactgtg tttgtaatga tggtgatgga ctggagattg ccagcaatcg
     1741 ccctgacggt tacgccgtcc gtatcgtatt cggcgatgtg ccggtttaaa ggggttttaa
     1801 atggactttg aatttggttt cagaaccctg tggccgattg cgacggcggc attttggttt
     1861 tgggtcaacg gcatttcagg ccgcctgaaa gaggcggaca agcgtatcga cgaccttaaa
     1921 gaggagttgc acgcggtcaa gctctcttat cacaccaagg cggacgccaa ggcagacagc
     1981 actaatattg cggcggcctt ggagcgaatt gaaaacaagt tagaaaaagt aaacgaaaaa
     2041 ctggacagga aagcagacaa atcatgagcg acccgatttt ggaagccttg gcgcgtattg
     2101 aaaacaagac tgatcaaacg ctgaaaaatc agaaagaaat gcaggcggaa attgcgcaaa
     2161 tccgccaaga cacgaaacgc acggccatta cattcggcgc actgggcggc ggcgtgatta
     2221 cggtcggctg ggaattgctt aaagcgaaaa tgggactgta attatggctc acccgcaaga
     2281 aatccgtgaa aagttacgtc ggctctatgt gagcggcgag caaactttgg aaacggcggc
     2341 cttgatgtgc gaaatcccgc agaccactgc gcgtgcgtgg aaacgtgcgg ataaggaaaa
     2401 aggcgacgac tgggataaga tgcgcgccgc ctacactttg gccggcggcg gtattgagga
     2461 cttgagccgt gcgatgttgg ccggttttat ggtgcagtac aacagcacga tgacgatgct
     2521 gcaggattcg agtaccgaag atttgccccc gtccgaccgc gccaagctgt tggccagcct
     2581 ggccgatgcg tttacgaaaa ccgtatcggc caatgcgcgt gtgatgccgg aaacgtcaaa
     2641 actggcgacg gctttggaat tgattgagtt cttgatggcg tttgtgcaag aaaaacatcc
     2701 caaacatttg cctgcctttg tggaggtatt ggagccgttt ggggcggaag tggagaagaa
     2761 gtttggttaa tagccgtcta tcaatctccc ataacgtgat cctcctactg aaaatacttc
     2821 aacatctgac tttaaacgct ctcccaatat tatggtttgg caacgggaac aggaatattt
     2881 atgaaaagca ccttcatacc cattgaattg aagaatcgat ttgacaccct gctcgtaaca
     2941 ttggggacaa atatcatgaa ttggctcgct gttcgccatc tctgttttca atcgatagac
     3001 gaaagaacca ggagcaagtt catacaattg gtagcgttgc ttctctgtag accaattttt
     3061 tactgccacc agttcttttt ccaactcatc tatacggcta attgccgccg tataagaaga
     3121 ttgggcttca aataaatcag tttgaatacc agcaatgatt tgattaagtt cgatggtttt
     3181 ttgcgctacc tctgcctctg ttttgagctg gttaaaccct tttaaaagtg atcctgcttc
     3241 ttttaggcct ataaatgcgt tagaaatgaa tccagtcatt ataaatactc atgaaaacaa
     3301 aagaattcct caaatccctt gccgaactgg ccgccagttt gcgccaagtc atcgaagcgg
     3361 aagtggacgg cttcgatgcg tcgcccaagg ctgtttctgc acgccgtgcc aaggtgtttg
     3421 acccgatagg cggttacgaa tatttcgtca acacctactt cccccattat atccgctcgc
     3481 ctgagaaatc cgaactgcat gcgtttttat tcagccgtct gccggagatt atccgctccc
     3541 ccaaagggga aaatgaggcg gtgggcgcac cgcgtggcga gggtaaatcg acgcaggtta
     3601 cccagttgtt tacgctgtgg tgtattgtga ccggccaaaa acattatgcc gttattgtga
     3661 tggacagcat agaccaggca tacccgatgc tcgaagccat caaggcggaa ttggaattta
     3721 atccgcgcct gaaaaccgac tttcctgaag tctgcgggca aggccgtgta tggcaggccg
     3781 gtacgattgt gacggccaat gacgttaagg tgcaagtggc cggtagcggt aaaaagctgc
     3841 gcggtttgcg tcacggccct taccgtcctg acttaactgt tttggacgat attgagaatg
     3901 acgaacaagt ccgcaacccc gaacagcgcg acaagctcaa tgcgtggctg actaaaacgg
     3961 tattgccttt gggcggggtc ggtcagaaat acgatgtgat ttatatcggc acgattttgc
     4021 attacgacag cgtacttaac cgcactttga ataacccgtt ttggcggggt gttaagttta
     4081 aggcgatgaa acgctggccc gaccgcatgg atttgtggga caggtgggag gaacttttcc
     4141 gaaacgacgg cgagacggtg gccgaggcgt tttatcaggc aaacaaagac gagatggagc
     4201 gcggcgcagt cacttcttgg gcggcgcgtg gcgtactcgc gctgatgaaa atccgtgcgc
     4261 gtgacggcca tgcgacgttt gattcggaat atcagaatga tccggtcagt ggcgaagatg
     4321 cgccgtttgc caagtcgatg aagttttgga acgacctgcc gtccgatttg gtgtatttcg
     4381 gtgcgctcga cccgtcgctg ggtaaagcgg gggcgagccg tgacccgtcg gcaatcgtca
     4441 tcggcggcta tcagcggtca atgggcaggc tttatgtcgt ggaggcgcaa atcaaaaaac
     4501 gtctgcccga cctgattatc gaagacgtta tctgcctgca ccgtcaatat cgttgcaaac
     4561 tgtggtttgt tgagacggtg cagtttcagg agtttttaaa agacgagctg gtcaagcgca
     4621 gcgcggcgcg tggaatacct gtcccggcgc gggcggtcaa gccggtatcg gacaaactct
     4681 tgcggattga gactttgcag cctcacatgg caaacggttt gattctgttg aatgagagcc
     4741 aacagacgct gatacagcag ttccgccatt ttccaaaggc tgatcatgat gatggtcctg
     4801 atgccgtgca tatgctctgg tcgggggcgg tggccaattg tgtgccgata gaatggcaaa
     4861 gccctaccga taacgatttt ggtaacgaga taaaaagtaa atggagccga taatggcaaa
     4921 aaaggacaat aaaactaaaa tccaaaagcc cgaggctgca ttgcagacgg atgcggctca
     4981 aattacggcg accggtcggg ttatcgccga gcatccgtcc aattttatta cgccgcaaaa
     5041 gatgcgcgcc ctcttcgagg acgcagaaag cggcgacatc cgcgcccaac acgagctttt
     5101 cgcggacatt gaggagcgcg acagcgacat cgcggcaaat atggggacgc gcaaacgcgc
     5161 gctgctgacg ctcaactggc gcgtcgcccc gccgcgaaat gcgacgcccg aagaagaaaa
     5221 gctgtccgac caagcctacg aaatgatgga cagcctgcct accctcgaag acctgattat
     5281 ggatttgatg gacgcggtag ggcacggatt ttctgcgttg gaggtcgagt gggtattttc
     5341 agacggcctt tacctgcccc gaaactttat ccaccgcccg caaagctggt tcaaatggga
     5401 caaagacaac gggctgctgc tgcgtacccg cgaaaatccg gaaggcgaag cgttgtggcc
     5461 gctgggctgg gtcgttcata cccaaaaatc gcgcagcgtc cagcaggcgc gcaacgggct
     5521 tttccgcacg ctttcctggc tgtatatgtt caaacactac gccgtccacg attttgccga
     5581 gtttttggag ctgtacggca tgcccatccg tatcggcaaa tacggcgcgg gcgcaaccaa
     5641 agaggaaaaa aacaccctgc ttcgagcggt ggcggaaatc ggtcacaacg cggcaggcat
     5701 catgccagaa ggtatggaaa tcgagctgca caacgctgca agcggtacga tggcaaccag
     5761 caatccgttt ttgcagatgg ccgactggtg cgaaaaatcg gcggcgcggc tgattttggg
     5821 gcaaacgcta accagcggtg cggacggaaa atccagcacc aacgcgctgg gcaatatcca
     5881 caacgaggta cgccgcgatt tgctggtgtc ggacgcaaaa caggtggcgc aaaccatcac
     5941 aagccaaatc atcggaccgt tcctgcaaat caactatccc aatgccgacc caaaccgcgt
     6001 gccgaaattt gaatttgaca cgcgcgagcc gaaagacatc gcggtctttg ccgacgctat
     6061 cccgaaactg gtggatgtcg gcgtacaaat ccccgaaagc tgggtgcgcg acaaactggt
     6121 cattccagat gtgcaggagg gtgaggctgt gttggtgcgg caggtaccgg acaatccgat
     6181 aaacagaact gcattggcgg ctttatccgc ccacaccgta ccatctaagg ctacgggcag
     6241 gcatcaggaa atattggacg gcgcgttgga tgacgcgctg gttgagcccg atttcaattc
     6301 tcagctcaac ccgatggtgc gtcaggcggt tgccgcactt aatgcttgca acagctacga
     6361 ggaggcagat gccgcactga atgcgcttta tccgaatttg gacaacgcga aactgcgtac
     6421 ctatatgcag caggccttgt ttatcagcga tattttggga caagaccatg cccgcgcctg
     6481 atttgggatt tgccttaagt ctgccgccaa aaaaggcaat cgagtggctg gaaagtaaaa
     6541 aggttacggc ggagagctac cgcaatctga cagcctccga aattgccaaa gtctatacga
     6601 ttgcccgcat gaccgacttg gatatgctca acgacatcaa aacttcgatg gttgaatcgg
     6661 caaaaagtgg acagtcgttt gacgattggc gaaaaggtat cttgaatctg ctcggcaaca
     6721 agggctggct gcatccgaac gggcataacg gtaaggatat catcgaccca gccaccggcg
     6781 aggtattcgg ttcgccgcgg aggttggaga cgatttaccg taccaacatg caaactgcct
     6841 acaacgccgg tcaatatcaa ggatatatgg caaatattga tgcacggcct tattggatgt
     6901 atgacgcggt aggcgacagc cgcacccgtc cggcgcattc ggcaatagac gggctggtgt
     6961 accgctacga cgacccgttt tgggcaacgt tttacccgcc caacggctac aactgccgtt
     7021 gctcggtcat cgcgctgtcg gagcgggatg tggaacgcca ggggcggatt gtcgggcaaa
     7081 gcacggcgga caatctagtc gagacccata aaatctacaa caaaaaaggc gatacttatc
     7141 tgacccttgc ctataaagca ccggatggca gtctgtacac gaccgatcga ggatttgatt
     7201 acaacgccgg acgaatgaac taccgccccg atttagacaa gtacgaccgt gcgttggcgc
     7261 atcaatttgc caaagcggaa atgggtggtg cggattttaa aaccagcttt aaacagcttg
     7321 aaaaagagtt ttatgaagtc aagcaacgtt tggatattga tggcaagccc gataaagagc
     7381 agaaaatcaa aatccgaaat gcgctatcaa gacagcttaa atttgctgcg ggtgtattga
     7441 gcaaggaaac gcaagaattg gcaggtatga cacgagcgac ggtgtggctg tctgatgata
     7501 cattggtcaa acaggtggac agtcgggagg ggcaatcgtt tggaacagat ttatatgcca
     7561 tgctccccga tctgattcat gagcccgaat atatttttta tgacaaaagc agaggaaaag
     7621 aaagttttgt tttgctcgga aaaccgttgg aggggaacga aaaatacaga ttgatggcag
     7681 ttttgaaata tctgccacag tacgattcga tttttttgga ttcgtttcgc agggcggatg
     7741 aaaaagaaat tgtgaaaagt aagaaacgct atgaaatgaa aaaaggctac taagtcggac
     7801 tgcaatcccg acacactctc gcttatgtaa cggataccaa tcccagtccg aggactgcat
     7861 aagggctgcg gagggcagac aaattcaccg cttttttagt agcctaggca ggataatacc
     7921 atgattgatg tcaaaataga caatatcttt gtcgtcctaa accaaatcga gcggcttggc
     7981 aacgggatcg aaaaccgcta cctgctgatg cgccgactgt ccgaaaccat gcacacggcg
     8041 gtcaagctca atttccgcta cgcaggccgt ccgaaatggt tggggctaaa ataccgcgac
     8101 ggcaagccgc tttcggattc gggtcgtctg aaagacagtt tttccacact gtcagacaac
     8161 gataccgccc ttgtcggtac gaatatcgtc tatgccgcca tccacaactt cggcggtatg
     8221 gcggggcgca accgcaaagt tcggattccg caacgggaat ttttgacgct gacggacgac
     8281 gacaaacagg ctttgatgga cgatgtgcag gattattttt cgggtctgat accgtgaatt
     8341 tataaaaccc tcaaaaacgc gctttttagc gcgttttttt atgcgggtaa tacaaacccc
     8401 tgcccaagat ataaaaatca atcctagacg cttctaaaaa gcccctgaaa acgattaatt
     8461 gtgtatcgcg cggacaggtt ttaaaaaaat ggcgggaggg tttgaagcac gcctactctt
     8521 tgttgttttt tcaaataggc aaaatgaccg tattgagaga ggtacacatg tccaaaaatg
     8581 cacaaaaaac cctacttgcc gtgtgcagtt tcgaggtgca gccaaaagac gggcgaatcc
     8641 aactgctgcc atatggcgaa tttcgcgcag tagacggtcg tccgactgat gtccctgcgt
     8701 ggtatctgac cgaagaaaac ggtcatgatg tcgcgttgtt ggccaacagc tcgcgcaatc
     8761 agttggttgt cgattatgaa caccagacgc tctacaaaga gaaaaacgga caacctgcac
     8821 ctgccgccgg ttggatgcgt tggctggagt tcacgcctaa aggcatgttt gccgaagtgg
     8881 agtggacgga caaggcggct gcggcaattg ccgcaaaaga gtatcgctac atctctgctg
     8941 tgttttccta tgacacaaag ggatatgtaa gcaaaatttt tcacgccgcg ctgacaaatt
     9001 tccccgcgtt ggacggtatg gacgaggtgc tggcggcagc gtcggcgcaa attttaaaac
     9061 cggaaacgga gcaaaaccct atgaaagagt tgttacagca actgttcggt ctgcctgatg
     9121 cgggcgaaga agaactgaag gcggcattgt ccgcgctcgt ggaagccaag ccggaaggtg
     9181 cggctttgtc cgccgatgta ttcgcgcagc tggcggaaaa agacagccgc attgcggctt
     9241 tgtcggcgca aaacggcacg cccgacctga cgcgatacgc gccggtgtcg ctggtgcgcg
     9301 acctgcaaaa ccaagttgcc gccctgaccg ccgagcgcga agccgacaaa ggcggcgaac
     9361 tgattaccgc cgcactgtct gctggcaagc tgctgcccgc acaaaaagaa tgggcggaag
     9421 gcgtgctgaa acagccgggt ggctttgcct ttttgagcgg ctttatcgaa aacgcccagc
     9481 cggtcgctgc actggcaggc tcgcaaacgg gcggcaaagc acccgacgaa cgcgtcgccg
     9541 cactgactgc ggaagaggca gccgcagcaa aaatgctggg catgtccggc gaagaatttg
     9601 taaaaatcaa agaaagcgaa ggtaagtaat ggacaaatca gcgattttga ccgcaatcac
     9661 ggcagcattc cgcaaagaat ttcaaacggg ggcctgcaaa accgcctgaa ccgtttaacc
     9721 gccaaatagg tgcagccggt agcgcaggca gtgcgcctgt tatccacgtc atcgctgttg
     9781 tcggtggcaa cggcattaat cgaggcgcat ggcgaagaga tgaccgcgcc cgatttgatt
     9841 gaggttagcc gcgccatgcg ccgccgtatg caggccgaga ttgccgcctt gcgggcggtg
     9901 cagacggctg ctgccgagtc tggtgggctg acggccaacg ccgtgtatac cgaggcttac
     9961 caaacggcag aatccctgcg cgcggcggca ggcagtctga atgcgttggt tgcggcggcc
    10021 atcaaccaaa agccgccgct gattgtgcgc caagccccaa tcgacggtac gatacaccaa
    10081 atcgcccacg agttttacgg cgatatagcc cgcgcagcag agctggtgcg actcaatccc
    10141 catatccacc accccgcgtt tatcaagcgc ggcactttgg tcaacagcta tgcaaaataa
    10201 ttcatacggc tatgccgtgt cggtgcgcgt gggcggtaaa gagcaccgcc actgggagcg
    10261 ctacgacatc gacagcgact ttttaatccc tgccgacagc ttcgattttg tcatcggcag
    10321 gttggggccg gaggcggcca tacccgattt aagcggagag agctgcgagg tagtgataga
    10381 cgggcaaatc gtgatgacgg gcatcatcgg cagccagcgc cacggcaaaa gcaagggcag
    10441 ccgcgagttg agcttgagcg ggcgtgattt ggccggtttt ttggtggatt gctccgcgcc
    10501 gcagctcaat gtaaagggca tgacggtatt ggatgcagcc aaaaagctgg ccgcgccgtg
    10561 gccgcagatt aaagcggtgg tgcttaaggc cgaaaacaac cccgctttgg acaaaatcga
    10621 catcgagccg ggcgaaactg tatggcaggc attaacccat attgccaact cggtcgggct
    10681 gcatccgtgg ctggagccgg acggcacgtt ggtggtgggc ggtgcggatt acagcagccc
    10741 gccggtggcg acattgtgtt ggagccgcac cgacagccgc tgcaatatcg agcgcatgga
    10801 cattgagtgg gataccgaca accgcttttc cgaggttact tttttggcgc aatcgcacgg
    10861 ccgcagcggc gacagcgcca aacacgattt aaagtgggtg tacaaagacc cgacgatgac
    10921 gctgcaccgc cctaaaacgg tggtggtgtc cgatgccgac aatttggccg cattgcaaaa
    10981 gcaggctaaa aagcagctgg ccgactggcg gctggaggga tttacactca cgataaccgt
    11041 gggcggccat aaaacccgcg acggcgtatt gtggcaacct ggccagcgtg tgcatgtgat
    11101 cgacgacgag cacggtatcg atgcggtgtt ttttctgatg gggcggcggt ttatgctatc
    11161 ccgcatggat ggcacgcaaa ccgagctgcg gctcaaagag gacggtattt ggacacccga
    11221 cgcttacccc aaaaaggccg aggcggcgcg caagcgcaaa ggcaaacgca aaggcgtgag
    11281 ccataagggc aaaaaaggcg gcaaaaaaca agcagaaacg gcggtgtttg aatgagtttg
    11341 agtaaattgg cgaaaaaaac ggcacaaact gctaaaaata tcggcgaaac cctgcgcacg
    11401 gcctttcggg gaaaaatcac gctggtggtg tcgtccgagc cgatacagcg cgtgcagttg
    11461 agcggcttgg ccgacgaaac cctgcaagac cttgaacatt tgcaggaata cggctttgcc
    11521 agccatccgc ccgacggcag cgaagcggta gtgataccgc tgggcggcaa tacttcgcac
    11581 ggtgtgattg tgtgcagcca gcacggcagc taccgcatca aaaaccttaa gcccggcgag
    11641 acggcgattt ttaatcatga gggtgcaaaa atcgtgatta agcaaggcaa aatcattgag
    11701 gccgattgcg acgtgtaccg ggttaactgc aaacaatacg aggttaatgc ggccacggat
    11761 gccaaattta acgctccgtt ggtggagacc agtgcagtgt tgacggcgca aggccaaatc
    11821 aacggcaacg gcggcatggc cgtcgagggc ggcgacggag ccacctttag cggcgatgtt
    11881 aaccaaacgg gcggcagctt taacaccgac ggcgacgtgg tggccggcaa tatatcgttg
    11941 cgccagcacc cgcataccga cagcatcggc ggcaaaacct taccggcgga accggcatag
    12001 acaagcagac ctttggcagc cttcgggctg ctttttttgt gcgtgtggga ttgaagcccg
    12061 tgtactccgt gaggccgtct gaaaacggca aaatgccaac atggacaaag agctaaaccc
    12121 cagcatcggc gactataccg gccgcaccgt cgatacgctg caaaatgccg tgtatatccg
    12181 cttgatgaca ccgttgggca gctggtgggc ggataaaacg ctcggctcgc tgctgcattt
    12241 gttgcagcgc gaaaaagacc tgcaacgggt cagcctgttg gccgagcaat atgccgatga
    12301 ggcactgcaa ccgattgtta agagcgggcg tgccgacaag attaccgtgc gcgcagagca
    12361 gccgcacgac ggccgcctga tcctgcatat ccgggtggat acggcggcgg gcgggtttga
    12421 ttaccgccac gaagtgcccg tgatttaaag aggttttaaa cgtgtttgaa acgccgacat
    12481 ttgagcaaat ccgcgagcgt atcctgcgcg ataccaaaag cctgtggccg gatgccgata
    12541 tcagccccga cagcgaccat tatgtgcacg ccagccgttt ggccagctgc gccgaagggc
    12601 aatatgcgca tcaaagctgg attgtgcggc agattttccc tgataccgcc gaccgcgagt
    12661 atttggagcg gcatgcctcc atgcgcggct tgcgccgccg caatcctacc acggccagcg
    12721 gcacgctgac cgtaagcggt attgcgcaat ccatgctttc agacggcctg caagtgcgta
    12781 tcggccagcg tttttaccgc actaccgccc gcgccgttat cggcagcggc ggcacggcgg
    12841 aaataccggc aatcgccgac gagctgggcg cggccgccaa tgtgcgcgac ggcgaggcgc
    12901 aactgatggc cgcccccgcc ggtgtgtcca ccgaatgccg ccttaccgta caaggcggca
    12961 ccgaccgaga aagcgatgcc tcactgctgg cgcgtctgtt ggaaatcatc cgccgaccgc
    13021 ccgcaggcgg caaccgttac gactataaaa actgggcgtt gagtgttgac ggcgtaacca
    13081 gcgcatatgt ttatccgctg cgccgcggct tgggtacggt ggatattgcc attacctccg
    13141 ccgacggtgt gccgtcggaa gaaactgtgc gccgcgtaca ggcttatatc gacgagatgc
    13201 gcccggtaac ggcaaaaaat gcgctggtac tcaagccaac cgtaacggcg gtgcctgtta
    13261 ccgtgcaagt caagctcgac ggcatcgact tggacgatgc caagcgccgc atacggacgg
    13321 ctctaaaaga atatttcgac accctgatcc ccggcgacgg tctgactgtg tcgcaaatcg
    13381 aggcggctat cagcaatgtg gatggtgtga tcgaccgccg tctgactgcg ccgacggcca
    13441 accgtgccgc cgatacggtt aaccgcatcg agtggtttaa agcgggcgcg attaatgtaa
    13501 cggagatgcc gtcatgagct atcaagacat cttgcggggt ctgttgcccc ccgtgtcgta
    13561 tgcccgcaat gccccgcgtg tgcgggcgca ggcagaaata gacggcgcag cgctggatgc
    13621 ggtggcggaa tcggctcaaa gcgttgccga tgccgtcgac ccgagcagcg ccggccaaat
    13681 gctggccgat tgggagcgcg tattaggttt ggacggtacg ggcaaaaacc gccagcgccg
    13741 tgtgttggcc gtcatggcca agctaaacga aacaggcggc ttgagtattc cttattttgt
    13801 gcgtttggcc gaggcggcgg gctatcaaat ccaaatcgac gaaccgcagc cgttccgcgc
    13861 cggtgtaaac cgcgccggcg accgtcttgc gccgcaggaa atcatgtggg tgtggcacgt
    13921 taacgtgcgc ggcggcaaca accgcattac ccgattccgc gccggtatct cggcggcggg
    13981 cgacaggctg accgattaca gcgatgccgt gatcgagagc ctgttcaacc gcctcaagcc
    14041 cgcccacacc gctatccgat ttacctaccg ataaggacta aaccatgcac cccatcgaaa
    14101 cccccgacaa gaccttccac gacggcgacg gcgtgtccga attgggcacc atcctgcccg
    14161 cgtggtggct caaccaagtg caatccgagc tgctggccgt gctgactgcg gccggtatcc
    14221 agccggataa gtcgcagcct aatcaattac tggcagcact aaataggctg gctgtagtta
    14281 ccaccggcga ccaaaccatc accggccaaa aaacctttac tgcccaaacc caattccaaa
    14341 gcggcatcca tttatccgcc aaccagacga actggaacgg cggccacaaa gcctacatcg
    14401 gcgcggctgc cgacaacgcc cacatcgtct tcggcgacaa caccctccgc ctgcacggcg
    14461 caaacaaccg catttcctac aacaaccacg acatcttcca caaagccaac aaaccgcgtt
    14521 ttgccgaaga catcaaaggc aaaccgaaca cactgtccgg atacggcatc ggcaatttca
    14581 aagtcgaaac attccggggc gatttgaaca ccctcaaaac agacggcatc tattccctgc
    14641 cgacggcggt cggcagctcc aacctgcccg ttgaaaacac cgcctgccat atccaagtca
    14701 tcgccggaac gcaacccggc tggtgcaggc agttgggtta tcccgcctac acgtccgacg
    14761 tgtacgaacg ccaccaaacg agcagcgcaa acgacaactg gtccgcatgg aaaaaactca
    14821 attcggacgg catccccgcc ggcgcgatcg tatcctttcc caaagccgta caaaaccccg
    14881 caggctatct caaagccaac ggcacgacct ttgcgcaaaa caccttcccc gacctctacc
    14941 gcgccttggg caacagcaac cgcctgcccg atttgagccg taccgacatc ggcatcaccg
    15001 cgtggtttcc gtccgaccaa atcccgaccg gctggctggc gtttgacgac atccgcacgc
    15061 gcgtaaccga aaccgcttat cccgagctgt accgtctgct gaccggaaaa tacggcagca
    15121 tccaaaacgt cccgcaggcg gaagaccgct ttatccgcaa cgcaggcaac agcttggcag
    15181 tcggaacgaa gcaggaagac gaaatcaaac ggcacgtcca caaagtattt tcacactgga
    15241 caaaccacac agacacggca gccgtcggtt acgaagacca caacgaaagg cagagaagcg
    15301 cgctcgtatc gacttggacg gacggcgatt taaacgacaa cggcttttta accccgcgct
    15361 cggacagcaa aatggcaacg ggcggcgacg aaaaccgccc caaagccctg gttttaaaac
    15421 tgtgcatcaa agccgccgac accttgggcg aagccgtgtt ttggataaag tcccacggcg
    15481 aaaccatcaa cgcaggcgcg ctggacgcgg gcacgctggc gcaaggtttg caagacaaag
    15541 ccgaccgcga ccacacccac accgccgccc aaatccaagg gctggacgaa aaaatcagca
    15601 ccgccgttgc cgcgcaattc acacgccaaa ccatcggcgg cgtggatatt gtcagattcc
    15661 ccgacggcac aatgatacag accggcagtt acaggtttac aagaagcggc ggccccatcg
    15721 aaaacgaagt cgtcttcccc gtcgcctttg ccgacggcaa cgtcaaatgc ttcgtatccg
    15781 aacgccattc gggacgcgtt accggcgatc gaaggcaaca caactggctg tttatccgcg
    15841 caaaaaacca cgccgccgcc attattacca actggtacga aggcagttgc gactggatgg
    15901 ccatcggcaa agccgcctcg ggaaacgccg ccagctcccc gataggcccc gaaatacctg
    15961 aaaccaacga agaaccgcaa agagagagtg gaagaacatc aaccggaccc cgaaaccgcc
    16021 gccgccgaga cggcttgctc gaggcactgc aagactagcg ggctgtagag atggctgtag
    16081 agacgggctg tagagatggg ctgtagagat gggcttcagc ccgccgatcc aagcaatccg
    16141 accgaaaccg gccgcgccgc caatcccccg aaacctatgc cccgccaatc ctgccactct
    16201 tcgtcattcc cgccgctttc gtcattcccg cgaaagcggg aatccagccc ctaaacgcgg
    16261 caggaatcta tcggaaaaaa cagaaacccc cgccaccgtc attcccgcga aagcgggaat
    16321 ctagacccca aacgcggcag gaatctatcg gaaaaaacag aaacccccgc cgccgtcatt
    16381 cccgcgaaag cgggaatcca gaccccgacg caacaggaat ctatcggaaa aaacagaaac
    16441 ccccgccgcc gtcattcccg cgaaagcggg aatgacggaa agtggcggga ataacgaaag
    16501 gcgggaatga ccgcgcaaaa agccgctgcc cccttcggac ggcaccggca acaaaaaacc
    16561 gcacggccga aaccgcgcgg gaaaggatag tcgggtgcgc ccgataagca gcggccgcag
    16621 ggttaagccc ttgcacctgt ttgcatcgaa gacaaaggcg gttcgggaaa taagggcgca
    16681 atatcaaaag ttttgcgttg cctgatttgc cacaaatcat aaccggcctg catattcagc
    16741 caaaaatcag gcgaagtatt gagcagttgg cttaaacgaa ccgccatctc gggcgtaatc
    16801 gaagattggg cgttgacaat gcgcgataag gcaacccggc tgacacccag gcgtttcgct
    16861 atatcggtaa tgcttgcacc gttaatatac tcttttaaaa caaggcccgg gtgggcagga
    16921 ttgtgcattt tcatattatt cctagtgata atcctgataa tcgacaactt cggcattgcc
    16981 gtcgttgaaa cgaaaagtca aacgccaatt tccgttgact ttaaccgccc aatgtcccga
    17041 caaactgccc ttgaggggat gaagattcca actcggcaca gccatatccg aaggcgtttg
    17101 cgcggcattc agcgcggtta gaagcagatt cagtttgacg gaatgcccag cttggatgcc
    17161 cgatagcgag cctgttttaa aaaagcgttc aagccctttg tgtttgaaag aaacaatcat
    17221 catcccaccc cgtctgtatc gccaaaggat acaaaacttt tatttaattg taaagcgacg
    17281 atatacaaaa aaggaaaccc cgaaatgacc atctatttca aaaacggctt ttacgacgac
    17341 acattgggca gcatccccga aggcgcggtt gccgtccgcg ccgaagaata cgccgccctt
    17401 ttggcaggac agacgcaggg cgggcagatt gccgcagatt ccgacggccg ccccgtttta
    17461 accccgccgc gcccgtccga ataccacgaa tgggacggca agaaatggga aatcggcgaa
    17521 gccgctgccg ccgcccgttt cgccgaacaa aaaaccgcca cggcattccg cctcgcggca
    17581 aaggcggacg aactcaaaaa cagcctcttg gcgggctatc cccaagtgga aatcgacagc
    17641 ttttacaggc aggaaaaaga agccctcgcg cggcaggcgg acaacaacgc cccgaccccg
    17701 atgctggcgc aaatcgccgc cgcaaggggc gtggaattgg acgttttgat tgaaaaagtt
    17761 gtcgaaaaat ccgcccgcct ggccgttgcc gccggcgcgg ttatcggaaa gcggcagcag
    17821 ctcgaagaca aattgaacgc catcgaaacc gcgccaggat tggacgcgct ggaaaaggaa
    17881 atcgaagaat ggacgctaaa catcggctga aaaaatacgt ttaccacctg ttggtagcca
    17941 tcgaccaact gttcaacgcc ctaaccggcg gcgcggcgga cgaaaccctc tcaagccgca
    18001 cctatcgcgg cgcgcggctc gcccaaaagc ccaaaacccg ctggaaggtt ttatacaccc
    18061 tgatcaacgg cgtatttttc gaccgccaac actgccggca ggcgtatatc agcgaactga
    18121 aaggcaggca gcacgacgcg cggttcaacc aaagccgcgc cgccggggaa aaggggacgc
    18181 gatgaactac ttcggcatgg tagagtttct gcgcctgatg gcaatggtgc ggccgccatt
    18241 tgtcttcttc tccggcaccc gcagcgaact gcctacttat cttgacctcg tggcagaact
    18301 gcgcctgacc ggatgggagc gttttgcagg cagccaaacc ttgactgtga gcagcacatc
    18361 aacagcaatt caagctacga cgaccacctg atttataagt tctgaccgca agtagcgtac
    18421 tacttttaaa ggcataagat aatccccgtt taacagacca ttaaacgggg ataaatttgt
    18481 gcaaaagcta atacaatttc ctacgcttcg gcggtgcaaa agctgccgcc aattcgtgca
    18541 aaagctgccg ccgccttaca ttccagtgca atgccgtctg aaacttcgct aatctcgggt
    18601 tgccgcgcgc tgtgttgttc ttcggtactc agcaaaaagc cgtacagacg ctccaatcgg
    18661 gcgcggtagg cggtgaattt gttgtagaac atccggaaaa aagatagcgc gttttgcagt
    18721 cgcgcaaagg cttggacggt ctgctggatg tcgccgattt tgatttgtcc ggcaaacagg
    18781 cgcggcgctt gcaaaataat ggggaagagt ttgatgccgt tggtgaacat atcgttaaag
    18841 ccgcttaagc agacgctttg ccgcgcgatg cgccaacggt tgcggataat ggctttaaag
    18901 cggtcggaaa gccggccgtg ttcgtgttgt tcgccgttgt aaaacgctac gctttcggcg
    18961 tggtcgcgta cgcggatgag ggaataacgg tagtcgccgt tgagtttttc gttttcatag
    19021 ttgtaacgaa tcaaggggtt gcctatccac atcgcgataa aggtcgccaa aatcacaaaa
    19081 ataaagacga gccaaacaat gccgcgcgga atgtcgaagc cgaacacggt caggatgcca
    19141 gccaagcccc acaaaacaac ggcaaattcc aaagaggtaa cgaccgaatt gaccatgccg
    19201 cgtacaaatt cgatggtcga agcgatgaaa tcctgcgcgt cctgttggat acgttggtcg
    19261 atgttgtccg gcgcgtggcg gcgcatttgc aggcggtagt agtttttgtc ggcaagccag
    19321 cgcgtcgtca gcacttcatt gagctgctcc gaccatttaa tcgccaagcc ttgatcgagg
    19381 aagtcgttga cgacattgtt aaacgcccgt atcagcacca cgcccgcgtt catcgcggca
    19441 aacatccaaa acgcggaggc gttcaaatcc tgcatcgagt cgtaaagtcc tttggacata
    19501 aaggtactca acacattcag ccgtacttcg gtcaacagca gcgtaaccat taccgtaatc
    19561 agcagcaaga ctttgaccgt gcttttcggt gtcaggcaaa gccaaagcgg tgtggaataa
    19621 agctcggttt gccatttctg catgggaaat ttcttacggt atcaatgccg tctgaaaaag
    19681 acgggtacag ttgatttttt gatgaagttt ggggaagttt tgccggtcag ggtacattgc
    19741 gtg
//
LOCUS       DAXHNP010000021        19278 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.021, whole genome shotgun sequence.
ACCESSION   DAXHNP010000021 DAXHNP010000000
VERSION     DAXHNP010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19278
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.021"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(12..848)
                     /locus_tag="ACFM5C_000565"
     CDS             complement(12..848)
                     /locus_tag="ACFM5C_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HFC6068317.1"
                     /translation="MIDLHCHSTVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIA
                     EARAEADRLDLRLINGVEISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRLE
                     AIAAKLEKKGIGGAYDGALALAANKEMVSRTHVAEFLIRAGHVKNKQQAFTKYLGDGK
                     SCAVRHEWATLEDCVSAVNGAGGLAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVH
                     SGNCCKNDRLNYALLAERFGLLASAGSDFHRLNDFSGGILGACPELPENCRPVWEHFS
                     RH"
     gene            complement(1156..1557)
                     /locus_tag="ACFM5C_000566"
     CDS             complement(1156..1557)
                     /locus_tag="ACFM5C_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068318.1"
                     /translation="MAIYDLNEIVTSAALGMYKGKWQNMDFEQVLQDIVQETDFTYSW
                     EYGENWAIFCLNEKSVGMLCKQIPFAIIENEKLSQKIYQEYPWILTQQVYHFDTDKIL
                     LNKYVCKLTIGIMSAISQEPISLQDLYVDTV"
     gene            complement(1662..1865)
                     /locus_tag="ACFM5C_000567"
     CDS             complement(1662..1865)
                     /locus_tag="ACFM5C_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase-like domain-containing protein"
                     /protein_id="HFC6068319.1"
                     /translation="MDTTLKNKAEAILGEPLLDEPIRPESWECCGSDCGEACIQTIYW
                     ADKARYDAQRRKLKEAGWSDDAV"
     gene            complement(1843..2076)
                     /locus_tag="ACFM5C_000568"
     CDS             complement(1843..2076)
                     /locus_tag="ACFM5C_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6068320.1"
                     /translation="MEAIVYLEDNEYIALCDLLKLAGLAESGGQAKALIAEGLVSRNG
                     ETETRKTAKIRGGEVIEFDGARLEIADGYDPEE"
     gene            2614..6048
                     /gene="dnaE"
                     /locus_tag="ACFM5C_000569"
     CDS             2614..6048
                     /gene="dnaE"
                     /locus_tag="ACFM5C_000569"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFC6068321.1"
                     /translation="MTEPTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDL
                     MNEFGLVKFYKACRGAGIKPIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLT
                     AAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKY
                     AAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEA
                     RVCIAGGWVLTDKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITL
                     GKNFLPLFPTPDGLSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELN
                     IIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLF
                     ERFLNPERVSMPDFDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVG
                     RVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAEEADELITLAKKLED
                     LTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRN
                     LTIIEMAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTA
                     HTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQ
                     VMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNY
                     MEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCR
                     ANGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLL
                     DFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMDNADQKAANANQGGL
                     FDMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSK
                     LKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQ
                     VLIIESKVSRDDYGGGDGLRILANQVMTLQMARERYARSLSLALAPHHDIGKLVQLLA
                     AHQLPDTPRIPLQLSYANEKASGRLQVPPKWTVTPSSALFGELETLLGSRSVRVNW"
     gene            6091..6345
                     /locus_tag="ACFM5C_000570"
                     /pseudo
     CDS             6091..6345
                     /locus_tag="ACFM5C_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742773.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6482..7414)
                     /locus_tag="ACFM5C_000571"
     CDS             complement(6482..7414)
                     /locus_tag="ACFM5C_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6068322.1"
                     /translation="MLSQLEYGIAKENRPNRQADRFAGSVLPLAASLTHKPNIMKPIP
                     TDTFQPAILPQAFETEIKSTCTGRIYRIQTATLGEMPSEGYPVLFVLDGEAFFPALFN
                     IMQSLMPNPVTRSNAPCLIVGIGYTTGSVRDLAQRAADYTPPLGDNATADERQQFGQA
                     DRFSAFIDSELTAFLESRYTLNRNETAVFGHSFGALFGLYSLLSHRRFRRHWLVSPSI
                     WWHNRRILDFMPSENRLNGIDVCLNIGALERGSGCKRREERDMAGLSERMAAELDRHG
                     AAVFFREYPNADHGNVSFYSLTDCVEYLRKAWQR"
     gene            complement(7484..9640)
                     /locus_tag="ACFM5C_000572"
     CDS             complement(7484..9640)
                     /locus_tag="ACFM5C_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HFC6068323.1"
                     /translation="MSVFRINMTAATVLAALSSSVFAAQTADLETVHIKGQRSYNAIA
                     TEKNGDYSSFAATVGTKIPASLREIPQSVSIITNQQVKDRNVDTFDQLARKTPGLRVL
                     SNDDGRSSVYARGYEYSEYNIDGLPAQMQSINGTLPNLFAFDRVEVMRGPSGLFDSSG
                     EMGGIVNLVCKRPAKAFQGHAAAGFGTHKQYKAEADVSGSLNSDGSVRGRVMAQTVGA
                     SPRPAEKNNRHETFYAAADWDINPDTVLGAGYLYQQRHLAPYNGLPADANNKLPSLPQ
                     HVFVGADWNKFKMHSHDVFADLKHYFGNGGYGKVGMRYSDRDADSNYAFAGSKLGMKT
                     PAGRPGCNTADDKACAVGLGTEIKQKALAFDASYSRPFRLGNTANEFVIGADYNRFRS
                     TNEQGRTTLYARGGLALNEFRSIPQVDLIANARKGVRGYSHTVATENLDEFGIYGKST
                     FHPADGLSLIGGGRLGHYKIESGEGKTLHKASKTKFTGYAGAVYDLNDNNSLYLSLSQ
                     LYTPQTNLDADGKLLKPRQGNQFEVGYKGSYMDDRLNARVSFYRMKDKNAAAPLNPNN
                     KKTRYAALGKRVMEGVETEISGAVTPKWQIHAGYSYLHSQIKTASNSRDDGIFLLMPK
                     HSANLWTTYQVTPELTIGGGVNAMSGITSSAGMHAGGYATFDAMAAYRFTPKLKLQIN
                     ADNIFNRHYYARVGGANTFNIPGSERSLTANLRYSF"
     gene            9800..10459
                     /locus_tag="ACFM5C_000573"
     CDS             9800..10459
                     /locus_tag="ACFM5C_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HFC6068324.1"
                     /translation="MTTPKLIIFDWDGTLADTTQPIIDTMRRSFAECGFPPPEAERVR
                     SLIGYSLPEIIRDLLEMPSETAIADITRTYSAHYLNPNNRNMTLFPDALPCLDKLKAQ
                     GYWLAVATGKGRAGLDNAISQTATGGYWLATACAGEYPSKPSPEMVFGICGELGFDPK
                     EALVVGDTAHDLHMAANAGAAAVGVATGAHSREQLLSAPHLAVLDGLSELPGFLAQHY
                     A"
     gene            complement(10546..11514)
                     /gene="ispH"
                     /locus_tag="ACFM5C_000574"
                     /gene_synonym="lytB"
     CDS             complement(10546..11514)
                     /gene="ispH"
                     /locus_tag="ACFM5C_000574"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFC6068325.1"
                     /translation="MNEKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVH
                     NKFVVDNLREKGAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAERGFRVFDATCPLV
                     TKVHKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGKMLLVETVGDVAKLEVRNPD
                     KLAYVSQTTLSVDETKDIIAALNARFPNIRNPHKEDICYATTNRQTAVKELAEQCDIV
                     IVVGSPNSSNSNRLREVAAGIGTDAYMVDNAGYLQRAWFEGKNKVGVTAGASAPEVLV
                     QEVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR"
     gene            complement(11544..12038)
                     /gene="lspA"
                     /locus_tag="ACFM5C_000575"
     CDS             complement(11544..12038)
                     /gene="lspA"
                     /locus_tag="ACFM5C_000575"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFC6068326.1"
                     /translation="MSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQYRERVNVIPS
                     FFDLTLVYNPGAAFSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEFAALGKTGAAM
                     IIGGALGNVIDRLIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLAVLDNIVHRKD
                     GKKT"
     gene            complement(12682..15471)
                     /gene="ileS"
                     /locus_tag="ACFM5C_000576"
     CDS             complement(12682..15471)
                     /gene="ileS"
                     /locus_tag="ACFM5C_000576"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFC6068327.1"
                     /translation="MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREI
                     AKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPI
                     EVMVEKLHGKDMPKARFRELCREYAAEQIARQKKDFIRLGVLGDWDHPYLTMDFKTEA
                     DTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKVSPAIDVAYPFKDTAA
                     LAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPTGKLVLAKDLAE
                     DALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDIPMLNGEHVTTDAGTGLVHTAP
                     AHGLEDYAVCNKYGIELYNPVNAEGKYIGETPRVAGMRVWEANPVILQWLEETSNLLA
                     SSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWG
                     RARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVALKIEEKGIE
                     AWFSLDKSELLSAEDCENYDKLSDTMDVWFDSGSTHYSVVKQREELEWPADLYLEGSD
                     QHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDGEGKKMSKSIGNVVAPQEVYNEFG
                     ADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIEDAVQQA
                     DMVEIDRYAVVLARQLQERLAGDYYPRYAFHFAVKDIVSFCSEDLGAFYLDILKDRLY
                     TTKADSHARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEF
                     PTINEKTEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYL
                     NALGEELRFALLVSKAEVKVGSELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKR
                     CAENVGGEGETRHYA"
     gene            complement(15613..16533)
                     /gene="ribF"
                     /locus_tag="ACFM5C_000577"
     CDS             complement(15613..16533)
                     /gene="ribF"
                     /locus_tag="ACFM5C_000577"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFC6068328.1"
                     /translation="MRIRLGRHNAPDFPHGAAVTIGNFDGVHLGHKHILQKLRLEADA
                     RGLPVVAVIFEPQPKEFFASRTGRVPPCRISPLRTKLELLEGTGCIDAVWVLRFDRHF
                     SEISAQGFIDRLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVE
                     DIRTSSTAVRQALSDGNLAYAKKLLGHDYVLGGRVVHGRKLGRTLNAPTANIRLPGHR
                     YALGGVFVVEADGAFGTRRGVASFGFNPTVDSGCSQKLEVHLFDFQGDLYGQRLNVRF
                     LHKLRDEEKFDGMEELKRQIAADMEAAKCW"
     gene            complement(17060..18355)
                     /gene="tyrS"
                     /locus_tag="ACFM5C_000578"
     CDS             complement(17060..18355)
                     /gene="tyrS"
                     /locus_tag="ACFM5C_000578"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFC6068329.1"
                     /translation="MSVIQDLQSRDLIAQTTDIEALDALLNEQKIALYCGFDPTADSL
                     HIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIR
                     NQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRD
                     GAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFG
                     LTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSI
                     EEIDAVEAKDKASGSKPEAQRILAEEMTRLIHGEEALAAAQRISESLFAEDQSSLTES
                     DFEQLALDGLPAFEVSDGINVVEALVKTGLASSNKEARGFVNSKAVLLNGKPAEANNP
                     NHAAERPDDACLLTDEHKRFGKYTILRRGKRNHALLVWK"
     gene            complement(18417..18950)
                     /locus_tag="ACFM5C_000579"
                     /pseudo
     CDS             complement(18417..18950)
                     /locus_tag="ACFM5C_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH hydrolase domain-containing protein"
     gene            complement(19100..19278)
                     /locus_tag="ACFM5C_000580"
                     /pseudo
     CDS             complement(19100..19278)
                     /locus_tag="ACFM5C_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         4272 a         5265 c         5211 g         4530 t
ORIGIN      
        1 tttatccgca ttcaatgccg ggaaaaatgt tcccacaccg gcctgcagtt ttccggcagc
       61 tcgggacacg cgccgaggat accgccgctg aaatcgttta agcggtggaa atcgctgccc
      121 gcgcttgcca acaatccgaa gcgttctgcc aaaagcgcgt agttgaggcg gtcgtttttg
      181 caacagttgc cgctgtggac ttcgatgcct gcgccgccga ggtttttaaa ttcttcaaac
      241 agattgcgct tggcggtggc ggacaaatcg tagcgcatcg gatgggcgat gaccgccagc
      301 ccgcccgcgc cgttgacggc ggagacgcag tcttccagcg tcgcccattc gtgtcggacg
      361 gcgcaggatt tgccgtcgcc caagtatttg gtgaacgcct gctgcttgtt tttgacatgt
      421 cccgcccgga tgaggaactc ggcgacgtgg gtgcggctga ccatttcttt gtttgccgcc
      481 agcgcgagcg cgccgtcgta tgcgccgccg atgcctttct tttcgagctt ggcggcgatg
      541 gcttcgaggc gtttcagacg gccttgccgc acttgcgcca acaggttttg caggttttcg
      601 tcccgttcgt cgaaatccaa accgacaacg tgtatggtgc gtccgcgcca agtgacggag
      661 atttccacgc cgttaatcag gcgcaaatcg agcctgtcgg cttcggcacg cgcttcggcg
      721 atgccgccgg tgtggtcgtg gtcggtcaac gccagcagcg tgcagccgtt ttgatgcgcg
      781 aggcggacga cttcggcggg ggaaagcata ccgtcggaaa cggtggaatg gcagtgcagg
      841 tctatcatgg ggtgttatat gtgtggtgaa tgaaggtcgg ggggcaatat tgtcgggcgg
      901 tgtggcggcg gcggtcattt taaaaaacag gtgtatggca aatgcaaagg aaaagccgct
      961 atgccgtcat tcccaacccc cgaatgtgcg gatagagcca gtggggatgg gtacattatt
     1021 tgtttgcatt agttagttat cctgctgtat ccattaaatc atatgcttca attaattgtt
     1081 gttctagctc ttgtaccaat tttggattgc gaattcctaa ctcaatttca aacagcgagt
     1141 tctcactatg tacatctaca cagtatctac ataaagatct tgtaaagata taggttcttg
     1201 gctgatggca ctcattattc caatagttaa tttgcataca tatttgttta ataaaatttt
     1261 atctgtatca aaatgataaa cttgttgagt tagtatccaa ggatattctt ggtatatttt
     1321 ctgtgataat ttttcattct ctataatcgc gaaaggtatc tgtttacata acataccaac
     1381 agacttttcg tttagacaga aaatagccca attttcccca tattcccaag agtatgtaaa
     1441 atctgtttcc tgaacaatat cttgtaaaac ttgctcaaaa tccatgtttt gccatttacc
     1501 tttatacata cctaatgcgg cactggttac tatttcgttt aagtcataaa tagccattta
     1561 tgttccttgc taatttccag gtgagacatg tataggactg agaccagtat gcccattagg
     1621 tttccctcta tacacattaa tagtagatgt tggttccgtt ttcagacggc atcgtccgac
     1681 caacccgctt cttttaattt ccgccgttgc gcgtcgtagc gggccttatc cgcccaataa
     1741 atcgtctgaa tgcacgcctc gccgcagtcg ctgccgcagc attcccacga ctcggggcgg
     1801 ataggttcgt ctaaaagcgg ttcgcccaag atggcttcgg ctttattctt cagggtcgta
     1861 tccatcggca atttccaagc gtgcgccgtc aaactcgatg acttcgccgc cgcgtatttt
     1921 ggcggtttta cgggtttcgg tttcgccgtt gcgcgacacc aacccttcgg caatcaacgc
     1981 cttcgcctgt ccgccgcttt cggcaagtcc ggccaatttc aacaggtcgc acaaggcgat
     2041 gtattcgttg tcttcgagat agacgatggc ttccatgatg tccccttgca gaaagagacc
     2101 gttattgtag cacctgccgc cgccgtaccc aaaattaccg caaaaccagc gatgtatccg
     2161 caccgcctgt tccgtaaaag taaaaatgcc gtctgaaacc ccgtatgccg caatccgttc
     2221 aaagaaatcc tgcccaacgg cagactgcaa atcctgttcc ccgacgaatc cgcattgacg
     2281 ctgatgcaca tcctcaaaca cgaactgccc gatacaccgg caatcggcat caaaacgaaa
     2341 tcaaaaacct gtttgaacgt aaaattaatt taactgcttg ccatccgtcc gaataaggta
     2401 tatagttctt tataactagt ttgatagttc tttatatcta tcaatactcc ttgggaagcc
     2461 tccaccacac ggtaggaggc atttttttgc cgtcgtaaaa gctcaaaaac atttgcaggt
     2521 catgccgtct gaatccgaaa cagcattacc tacaccgcca tctaaagaca accctgctac
     2581 aatacgcctt ttattgttca cgccgatttt gccatgaccg agccgaccta catccccttg
     2641 cgcctgcata ccgagttctc aattaccgac ggtatggtgc ggattaaaaa actggttgcc
     2701 aaagcgcagg aatacggttt gcctgctttg ggcatcagcg atttgatgaa cgaattcggc
     2761 ttggtgaaat tctataaagc ctgccgcggc gcagggatta aacccatcgg cgcggcggac
     2821 gtgtggatag gcaatccgaa tgcgcccgac aagccgtttc gcgccatgct gattatccgc
     2881 aacgatgcgg gctatctgcg cttgagcgag cttctgacgg cggcttatgt cggcaaagac
     2941 cgcaatatcc atcatgcgga actcaatccc gaatggctgg aaaacggcga caacagcggc
     3001 ttgatttgtt tgagcggcgc acattacggc gaagtgggcg tgaatctgtt gaacggcaat
     3061 gaagacgcgg cgcgtgcggc ggcgttgaaa tatgcggcat ggtttcccga tgcgttttat
     3121 ttagagctgc aacgcctgcc cgaacgcccc gaatgggagg cttgcgtttc cggcagcgtg
     3181 aagctggcgg aggaactggg tttgccggtg gtggcgaccc acccgacgca gtttatgagc
     3241 agcgatgatt tcaacgcgca cgaggcacgg gtgtgtattg cgggcggctg ggtgctgacg
     3301 gacaaaaaac gtccgcgcga tttcacaccg ggccagtttt tcattccgcc ggaaacgatg
     3361 ctggagcgtt tcgccgattt gcccgaggcc ttggaaaaca cggtagaaat tgccaaacgc
     3421 tgcaatctgc acatcacatt gggcaaaaac ttcctgcccc ttttccccac gcccgacggt
     3481 ttatcgcgcg atgactatct catcaaactc tcaaacaagg gcttgcagga acgcatggtt
     3541 cagctttatc ccgacgaggc ggagcgtgcg gcaaaaatgc cggaatatca ggaacgtttg
     3601 gattttgagc tgaacatcat catccagatg aaattccccg gctatttcct tatcgtacaa
     3661 gactttatca actgggcgaa aacgcacggc tgtccggtcg ggccgggacg cggttcgggc
     3721 gcgggttcgc tggtggcgta ttcgctgaaa attaccgacc tcgacccgct gaaatacgcg
     3781 ctgctgtttg aacgtttctt aaaccccgaa cgcgtctcca tgcccgactt cgacgttgac
     3841 ttctgtcagg caaaccgcgg ccgcgtgatc gaatatgtgc gcgataaata cggcgctcag
     3901 gcggtcagcc agattgttac cttcggcacg atgtcgtcca aagcggtcat ccgcgacgtg
     3961 gggcgcgtgt tggagctgcc gtttatgctg tgcgacaaac tgtccaagct gattccgttg
     4021 gaagccaaca aacctctggg tttggacgac gcgatgaagg cggagccgca gattcaggaa
     4081 ttaatcgaag cggaagaagc ggacgaactg attacgctgg cgaaaaagct ggaagacctg
     4141 acgcgcggtt tgggtatgca cgcaggcggc gtgttgattg cgccgggcaa gatttccgat
     4201 tacagccccg tgtatcaggc ggatgaatcc gcctctcccg tatccatgta cgacaagggc
     4261 gacgtggaag acgtgggttt ggtgaaattc gactttttag gtctgcgtaa cctgaccatt
     4321 atcgaaatgg cgcagaacaa catcaaaaac accaccggcg acatcatcga tgtcggcaaa
     4381 attccgctcg acgaccaagc cgcctaccaa atcttccgag atgcgaacac caccgccgtg
     4441 ttccagttcg agtcgaccgg catgaaaaaa atgctgaaaa cggcgcacac gaccaagttt
     4501 gaagaactga ttgccttcgt atcgctctac cgccccggcc cgatggacaa catccccgac
     4561 ttcgtcgcgc gcatgaaagg ccaggaattc caatacatcc atccgctgct cgaaggcatc
     4621 ctcgcgccga cctacgggat tatggtgtat caggaacaag tgatgcaggc ggcgcaaatt
     4681 atcggcggct actcgctcgg cggcgcggac ctgctgcgcc gcgcgatggg taagaaaaag
     4741 cccgaagaaa tggtgaaaca ccgcgaaatc tttgccgaag gcgcggcaaa acaaggcatt
     4801 tcgcgcgaaa aatccgacga aatcttcaac tacatggaaa aattcgccgg ctacggtttc
     4861 aacaaatccc acgccgccgc ctacgccctg atttcctacc agaccgcatg gcttaaagcc
     4921 cactatcccg ccgaatttat ggcggcgacc atgtcgtccg aattggacaa caccgaccag
     4981 ctcaagcatt tctacgacga ctgccgcgcc aacggcatcg agttcctgcc gcccgacatc
     5041 aacgaatccg actaccgctt cacgccgtat ccggacatga aaatccgcta cgcgctcggc
     5101 gcgattaaag gcacgggcga agccgccgtc gaatccatca tcgccgcgcg gcaaagcggc
     5161 ggcaagttta ccggcctctt ggacttctgc gagcgcgtcg gcaaagaaca catgaaccgc
     5221 cgcacccttg aagccctgat acgcggtggc gcgttcgaca gcatcgaacc caaccgcgcc
     5281 atgctcttgg cgaacatcga cctcgctatg gacaacgccg accaaaaagc cgccaacgcc
     5341 aatcagggcg ggcttttcga catgatggaa gacgccatcg aaccggtgcg gctcatcgac
     5401 gcgccgatgt ggagcgaatc ggaaaaactc gccgaagaaa aaaccgtcat cggcttttac
     5461 ctgtccggcc acccgttcgg cccgtatgcc caagaagtcc gccaaatcgc cccgcagaaa
     5521 ctgtcgaaac tcaaaccgca agacagcgtg cgcctcgccg gattcgttac cgccgtacgc
     5581 accatgatgg gcaagcgcgg caaaatcgcc ttcgtcagcc ttgaagattt gagcggacag
     5641 gttgaaatca tggtcggcgg tcagacgttg gaaaactgcg ccgactgcct caaagccgac
     5701 caagtgctga ttatcgaatc caaagtcagc cgcgacgact acggcggcgg cgacgggctg
     5761 cgtattctgg caaaccaagt catgaccctg caaatggcgc gcgaacgcta cgcccgaagc
     5821 ctcagcctcg ccctcgcccc gcatcacgac atcggcaaac tggtacaact gctcgccgcc
     5881 caccaactgc ccgacacgcc gcgcatcccg ctgcaactgt cgtatgccaa cgaaaaagcg
     5941 tcgggcaggc ttcaagtgcc gccgaaatgg acggttacgc cgagttccgc attgttcggc
     6001 gaactggaaa cattgctcgg cagccggtcg gtgcgcgtca actggtaacc caaaatataa
     6061 atgccgtctg aagcccaaaa accggtttca ttcgtacttt attcgaatga ttgaataaaa
     6121 gtaactgcca agaaaaacgt attttttggt tatttcgcca gtctaaatag agcaaccggg
     6181 acgattgata tccgtgtgca tgacacagac agcaccaaag ggaaaaacgg cattttccaa
     6241 agtatcggta tcaaaaccgc cctttcactc caaaaatacc aaatcgacaa accgggcaaa
     6301 gaaatcagac cgtgccgcct gaaaaaacgc ccacccgtcc gttaaattaa cctatccctg
     6361 tttcagacgg cctgaagcag ggatttttat atcaaaataa aatgagaaag ggagcaataa
     6421 cccttaggta gctcttgtta ttttccgatg caaaacaaag cagtcatata tttaattccc
     6481 cctacctctg ccaagccttc ctcaaatatt cgacgcaatc ggtcagcgag tagaacgaga
     6541 cattgccgtg gtcggcattc ggatattccc ggaaaaagac ggcggccccg tgcctgtcca
     6601 actctgccgc catgcgttcg gacagtcctg ccatatcgcg ttcttccctg cgtttgcaac
     6661 cgctaccccg ttcgagcgcg ccgatgttga ggcagacatc gatgccgttt agccggtttt
     6721 cagacggcat aaaatcgagt atccgcctgt tgtgccacca aatcgatggg gatacgagcc
     6781 aatgccgtct gaaacggcgg tgggaaagca gggaatacag tccgaacagt gcgccgaacg
     6841 agtgtccgaa tacggcggtt tcattgcggt tgagggtgta gcggctttct aaaaaggcgg
     6901 tcagctcgct gtcgataaag gcggagaagc ggtctgcctg tccgaactgc tgccgttcgt
     6961 ctgctgtggc gttgtctcca agcggcggcg tgtagtcggc ggcacgttgt gccaaatcgc
     7021 gcacactgcc tgtcgtgtag ccgataccga caatcaggca gggggcgttg cttcgggtaa
     7081 cggggttggg catcagcgac tgcatgatgt tgaaaagtgc ggggaaaaag gcttcgccgt
     7141 ccaaaacgaa gaggacggga tagccttcag acggcatttc gccgagtgtc gccgtctgaa
     7201 tccgatagat tcgccccgtg caggtggatt tgatttcggt ttcaaaggct tggggcagta
     7261 tggcaggttg gaatgtgtcg gtcggtatgg gtttcatgat gttcggcttg tgggtcagac
     7321 tggcggcaag cggtaaaacc gaaccggcaa agcggtctgc ctgccggttc ggtctgtttt
     7381 ccttcgcaat gccatactcc agttgtgaga gcatagggta tgcagcgcag cttgttgtgg
     7441 tttgatgatg ctgcggctgc cgtttcagac ggcatattgg tctttaaaaa ctgtaacgca
     7501 ggtttgccgt caggctgcgc tccgaaccgg gaatgttaaa ggtgttcgcg ccgccgacgc
     7561 gggcgtagta atggcggttg aagatgttgt cggcgttgat ttgcagcttc agcttgggcg
     7621 tgaagcggta tgccgccatc gcatcgaacg tggcataacc gcctgcatgc atccctgcag
     7681 atgaagtaat gccgctcatc gcgttcactc cgccgccgat ggtcagctcg ggcgtaactt
     7741 ggtaagtcgt ccacaggttt gcgctgtgtt tgggcatcaa taggaagatg ccgtcgtcgc
     7801 gtgaattgga ggcggttttg atttggctgt gcagatagct gtaacctgca tggatttgcc
     7861 atttcggtgt aaccgcgccg ctgatttcgg tctcaacgcc ttccatcacg cgtttgccca
     7921 atgcggcgta acgggttttt ttgttgttcg ggttcaacgg tgcggcggcg tttttgtctt
     7981 tcatgcggta gaacgaaact cgggcattga ggcggtcgtc catgtagctg cctttgtaac
     8041 cgacttcaaa ctggttgcct tggcgcggtt tgagcagctt gccgtcggca tcgaggttgg
     8101 tttgcggtgt gtagagctgg gacaggctca ggtagaggct gttgttgtcg ttcaagtcgt
     8161 aaaccgcgcc tgcgtagccg gtgaacttgg ttttgctggc tttgtgcagg gttttgcctt
     8221 cgcccgactc gattttatag tgtcccaaac gtccgccgcc gataagcgac agcccgtcgg
     8281 caggatggaa ggtggatttg ccgtaaatgc cgaattcgtc gaggttttcg gtagcgacgg
     8341 tatggctgta accgcgcacg cctttgcgcg cgttggcaat caaatcaacc tgcggtatgc
     8401 tgcggaactc gtttaaagcc aggccgccgc gtgcatataa agtagtacgg ccttgttcgt
     8461 tggtgctgcg gaagcggttg taatcggcgc cgatgacaaa ttcgttggcc gtattgccca
     8521 agcggaaagg cctgctgtag ctggcgtcaa acgcgagggc tttttgtttg atttctgtac
     8581 ccaaacccac cgcgcaggct ttgtcgtcag ccgtattgca gcccgggcgg cctgccgggg
     8641 ttttcatgcc cagcttgctg ccggcaaagg catagttgga gtcggcatcg cggtcggaat
     8701 agcgcatacc gactttgccg tagccgccgt tgccgaagta atgtttcaaa tcggcgaaca
     8761 cgtcgtggct gtgcatttta aatttgttcc aatccgcgcc gacaaatacg tgttgcggca
     8821 gggacggtaa tttgttattg gcatcggctg gcaagccgtt gtacggcgcg aggtggcgtt
     8881 gctggtaaag atagcccgcg cccaaaaccg tatcggggtt gatgtcccaa tccgccgccg
     8941 cgtagaaggt ttcgtgccgg ttgtttttct cggcgggacg cggagacgcg ccgacggtct
     9001 gcgccatcac gcggccgcgc acgctgccgt ctgaattgag gctgcccgat acgtccgcct
     9061 cggctttata ttgtttgtgc gtaccgaacc ctgccgcagc atgaccttgg aacgctttgg
     9121 ccgggcgttt gcacaccaga tttacgatgc cgcccatctc gccgctgctg tcgaacaagc
     9181 cgctcggccc gcgcatcact tccacacggt cgaaggcaaa cagattgggc agcgtgccgt
     9241 tgatactctg catctgcgcg ggcaggccgt cgatgttgta ttcgctgtat tcgtaaccgc
     9301 gcgcgtaaac cgaagagcgt ccgtcgtcgt tgctcaacac gcgcaggccg ggcgttttgc
     9361 gtgccaactg gtcaaacgta tcaacattgc ggtctttgac ctgttgattg gtgatgatgc
     9421 tgacagattg cggaatttcg cgcaaagaag cggggatttt tgtgccgacg gtggcggcaa
     9481 acgagctgta atcgccgttt ttctcggtgg caatcgcgtt gtacgaacgc tgacccttaa
     9541 tatggacggt ttccaaatcc gccgtttgtg cggcaaaaac cgaagacgaa agtgctgcca
     9601 aaaccgtggc ggcggtcata ttgatgcgga aaactgacat aaactgtccc attcacataa
     9661 atgataatgg ttctatttta ataaagcaca acgcggcttg ttcggaaaaa catatcgcgc
     9721 agccgacaaa ttttgtcgaa aatgcgacac gtctgcgttt tccgcataaa atctgacttt
     9781 tcaccgtaaa caacctgcca tgaccacgcc caaactcatc atcttcgact gggacggcac
     9841 gcttgccgat acgacccaac ccatcatcga caccatgcgc cgcagcttcg ccgaatgcgg
     9901 ttttccgccg cccgaagcgg aacgcgtccg cagcctgatt ggctacagcc tgcccgaaat
     9961 catccgcgac ctgctcgaaa tgccgtctga aaccgccatt gccgacatca cacgcactta
    10021 ttccgcacat tacctcaatc ccaacaaccg caatatgacg ctctttcccg atgccctgcc
    10081 ctgtctggac aagctcaaag cacaaggata ctggcttgcc gtcgccacgg gcaaagggcg
    10141 ggcgggtttg gacaacgcca tcagccaaac cgccaccggc ggctattggc tcgccaccgc
    10201 ctgcgcgggg gaatatccct ccaaaccctc gcccgaaatg gtattcggaa tctgcggcga
    10261 actggggttc gacccgaaag aggcattggt cgtcggcgat acggcgcatg acctgcatat
    10321 ggcggcaaac gcaggcgcgg cggcagtcgg cgttgccacc ggcgcacatt cgcgcgaaca
    10381 gctccttagc gcaccgcatc tcgccgtatt ggacggtttg tccgaactgc ccggttttct
    10441 tgcacagcat tacgcctgat tggtttccgc atccggcact cgaaacaaat gccgtctgaa
    10501 ggttgttcag acggcatttg ttttgcccaa acattcaacg cttgctcaac gtttgcacaa
    10561 atcgggtttg gtttcgccct cgcggcgcaa ctctttgggc aggacgaaca cgatgctttc
    10621 ttccgcgccc tccccttcgc gtacggtttc atgcccccac ccgcgtatgg ttgccaatac
    10681 ttcctgcacc aacacttcgg gcgcggacgc gcctgccgtt acgccgactt tgttcttgcc
    10741 ctcaaaccac gcgcgttgca ggtagcctgc attgtccacc atatacgcat cggttccgat
    10801 gcctgccgcc acttcgcgca ggcggttgct gttggacgaa ttgggcgaac cgaccacaat
    10861 cacgatgtcg cactgttctg ccaactcttt gacggcggtt tgccggttgg tcgtcgcata
    10921 gcagatatct tccttgtgcg gattgcggat attggggaaa cgcgcgttca gcgcggcgat
    10981 gatgtctttg gtttcatcga ccgagagcgt ggtttggctg acataggcga gtttgtcggg
    11041 gtttctgact tcgagttttg ccacatctcc gaccgtttcg accaaaagca ttttgcccgg
    11101 cgcaagctgc cccatcgttc cttcaacctc gacgtgcccc ttatgcccga tcatgatgat
    11161 ttcacagtct tgggcatcca gtcgggcgac ttccttatgc actttcgtca ccagcgggca
    11221 agtcgcatca aacacgcgga aaccgcgctc cgccgcttct tgccgcaccg ccttcgatac
    11281 gccgtgtgcc gaataaacca gtgtcgcgcc cggcggcact tccgccaagt cttcaataaa
    11341 caccgcacct ttttcacgca ggttgtccac gacgaatttg ttgtgaacga cttcgtggcg
    11401 cacataaatc ggcgcgccga attcttccaa agcacgttcg acaatactga ttgcccgatc
    11461 cacgccggcg cagaagccgc gcggattggc aaggatgatg gttttctcgt tcataagttt
    11521 tgcattccgt gttcagacgg cattcacgtt tttttgccat ctttgcgatg gacgatattg
    11581 tcaagcactg ccaataccgc gccgacgcag ataaaactgt cggcaatatt aaaggcggga
    11641 taaaaccaat tttgccaata aaacaataag aaatcgacga catgaccgtg tatcaggcga
    11701 tcgatgacat tgcctaacgc accgccgata atcatcgccg cacccgtttt gccgagggct
    11761 gcaaactcat cgcgcaagat ggcgcgtacc aaatacgcgc tcaccgccac cgccagcacc
    11821 aaaaaaaagt atttttgcca gccgccctga tcggcaagga agctgaacgc cgcacccggg
    11881 ttgtacacca gcgtcagatc gaaaaaggaa ggaatgacat tgacgcgttc ccgatactga
    11941 aacgacgaca gcaccgccca cttcgaccac tggtccagca cgatggcggc aagtgccaat
    12001 acccaatagc gcgttttact tgaaacagat gaagacatat ttttcaacag ccggtaaaag
    12061 agtaccattt tacccgaaaa ccccctttcc tgtacccgaa acggcaaatg ccgtaatctt
    12121 aaaacccgtc attcccgaca acaccgtaat ctcgaaaccc gtcattcccg cgtaggcggg
    12181 aatccagacc tgtccgcaca gaaacttatc ggataaaaac agttgctcaa acccctcgtt
    12241 ctagattccc actttcgtgg gaatgacggt tcagttgcgt tccgacaaca ccgtaatctc
    12301 gaaatccgtc attcccgcac aggcgggaat ccagacccct gacgcggcgg gaatctatcg
    12361 gaaatgactg aaaccccgag attctagatt cccactttcg tgggaatgac ggttcagttg
    12421 cgttccaaca acaccgcaat ctcgaaatcc gtcattccca cacaggcggg aatccagacc
    12481 cacgacgcgg cgggaatcta tcggaaatga ctgaaacctc gagattctag attcccactt
    12541 tcgtgggaat gacggttcag ttgcattccg acaacaccgc aatcttgaaa cccctccgcc
    12601 gttataaaga caaatcgcgg cacaaaaaat gccgtctgaa atgctgttcg gcggtttcag
    12661 acggcatttg ctcaaacttt atcaggcgta atggcgcgtt tcgccttctc cgccgacatt
    12721 ctctgcacag cgtttgcaga cggtttcata gcctgcaacc gcgcccacat cgcgggtgta
    12781 gtgccagcag cgttcgcatt tttcaccatc actggcttta gcggcaacgg caagttcgct
    12841 gcctactttc acttctgctt tagacaccag caaagcaaag cgcaattctt cgcccaaagc
    12901 attcagatag ccggccattt cttccggcgc ggtaatttcg gcttcggctt gcaaggacga
    12961 accgacggtt ttgtcggcgc gcaaaggctc gatggcggcg gttaccgctt cgcgggcttc
    13021 gcggattgcc gtccattttt tcaccagttc ggcttcggtt ttttcgttga tggtcgggaa
    13081 ctcgtgccaa gtatggaaga ggacgctgtc ttcttcgccg ccgccgatga tgtcccacgc
    13141 ttcttcgccg gtgaagcaca aaatcggtgc aatcaagaga accaaactgc gtgtgatgtg
    13201 atacagggca gtttgtgcgc tgcggcgtgc atggctgtcg gctttggtgg tgtagaggcg
    13261 gtctttcagg atgtcgaggt agaacgcacc caagtcttcc gagcagaaag aaacaatgtc
    13321 ttttacggca aagtggaagg cataacgcgg atagtaatcg cctgccagac gctcttgcag
    13381 ctgacgtgcc aataccacgg cgtagcggtc gatttccacc atatccgcct gttgcacggc
    13441 atcttcaatc ggattaaagt cgctcaagtt ggcaaacaaa aagctcaagg tattgcggat
    13501 acggcggtag ctttcggtta cgcgtttgag gatttctttg gaaatcgcca attcgccgct
    13561 gtaatcggta gatgccgccc acaggcgcag gatgtctgcg ccgaattcgt tataaacctc
    13621 ttgcggtgca acgacgttgc cgatggattt cgacattttt ttgccttcgc cgtcgacaac
    13681 gaaaccatgg gtcagcagct gtttatacgg cgcgcgaccc attgatgagg cgcagccggt
    13741 cagcatggac gattgaaacc agccgcggtg ctggtcgctg ccttcgagat acaaatccgc
    13801 cggccattcc aattcttcgc gttgtttcac aacggaataa tgggtcgaac cggaatcgaa
    13861 ccatacgtcc attgtgtcag aaagtttatc gtaattttcg caatcttccg cgctcaagag
    13921 ttcgctctta tcgagggaga accacgcttc gatgcctttt tcttcgattt tcagggcaac
    13981 tttttccaaa agttcggcag agttcggatg cagctcgccc gtttctttgt gaacaaagaa
    14041 agtcatcggc gtgccccaat agcgttggcg tgaaaccacc cagtcaggac gaccttcaat
    14101 catggcttcc aaacgcgcgc gaccccaaga cgggaagaat tcggtgtcgt ccacggcctt
    14161 gatggctttg tcgcgcaggg ttttgccgtc ggcaccggct ttgtccatac cgacaaacca
    14221 ttgacctgtc gcgcggtaaa tcagcggcgt tttgtgccgc cagcagtggg cgtagctgtg
    14281 ttcgatttta ctgcttgcca aaaggttgct ggtttcttcc aaccattgca ggatgacggg
    14341 gttcgcctcc caaacgcgca taccggcgac acgcggcgtt tcgccgatgt atttgccttc
    14401 ggcgttgaca ggattgtaaa gctcgatgcc gtatttgttg cagacggcgt agtcttccaa
    14461 accgtgcgcg ggcgcagtat gcaccaagcc ggtaccggca tcggtggtaa cgtgttcgcc
    14521 gttaagcatg ggaatatcgc gttcgaggaa cggatggttc atgtgcaggt tttccagctt
    14581 gtcgccggtg gtttcggcaa ggatggcgat gccgtctgaa aagccgtaac gtttgagcgc
    14641 atcttccgcc aaatctttcg ccagcaccaa tttgcctgta ggcgtatcga ttaattgata
    14701 caccacgtcc gcaccggcag acacggcttg gctcgccggc agcgtccaag gcgtggttgt
    14761 ccaaataacg gcaaacgctt tgccttcgat acctgccaaa ccgaatgcgg cggcaagcgc
    14821 ggcggtgtct ttaaacggat aggcaacgtc aatcgcaggc gatactttgt ctttgtattc
    14881 cacttccgct tcggccaatg aagaaccgca gtccaagcag aattgaaccg gtttcgcgcc
    14941 ccggtagaga tagcccgatt tgtagatttc gccgagcata cgcacggtat cggcttctgt
    15001 tttgaaatcc atggtcaggt aaggatggtc ccagtcaccc aacacgccca agcggataaa
    15061 gtcttttttc tgacgggcaa tctgttcggc ggcgtattcg cggcacaatt cgcggaaacg
    15121 ggctttaggc atgtctttgc cgtgcagttt ttccaccatc acttcgatag gcaggccgtg
    15181 acagtcccaa cccggcacat aaggcgcgtc aaaaccggct tgggttttgc tgcggataat
    15241 gatgtctttg agaattttgt tgacggcgtg accgatgtgg atgtcgccgt tggcatacgg
    15301 cgggccgtcg tgcaggatga atttcggacg gcctttggcg atttcgcgca gtttttggta
    15361 gcgtttttgc tcgtaccagc ttttcagcca tgcaggctcg cgcttggcaa gattgccgcg
    15421 catcggaaac gggctttcga gcaggttgac ggttttgctg taatcggtca ttttttgatc
    15481 tctattgtta caatatttcg gtttcagacg gcattgcgcc tcaaacagta tttcacaacg
    15541 ggaaacccct atgccgtctg aaaagttaaa aggttgattg tagcccaatc ggatggtttg
    15601 tataaggttt gcctaccaac actttgcggc ttccatatcg gctgctatct gccttttcag
    15661 ttcttccata ccgtcaaact tttcctcatc gcgcagtttg tgcaggaagc ggacgttcag
    15721 ccgttgtccg tacaggtcgc cttgaaagtc gaacaggtgg acttcaagct tttgagaaca
    15781 gccgctatca acggtgggat tgaagccgaa gctcgccacg ccgcgccgcg tgccgaatgc
    15841 gccgtccgct tcgacgacga acacgccgcc gagtgcataa cggtggccgg gcaggcggat
    15901 gttggcagtc ggggcgttta aggtgcgtcc gagttttctg ccgtgcacca ccctgccccc
    15961 caaaacgtag tcgtgcccca aaagtttttt cgcataggca aggttgccgt ctgaaagggc
    16021 ctggcggacg gcggtactgc tggtgcggat gtcttcgacg atgacggaag gcgtgcgttc
    16081 ggtctgcata tcgggctgtt gtgccaacag ttcaaaacag ccttcccgcc ccgcaccgaa
    16141 acggaaatcg tcgccgacga gcaaatagcg cgtatttaaa gtttgacgca gcaggcggtc
    16201 gataaaccct tgcgcggata tttcggaaaa atgccggtcg aaacgcaaaa cccagacggc
    16261 atcgatgcag cccgtccctt ccagcaattc cagtttggta cgcagggggc tgatgcggca
    16321 cggcggcact ctacccgtgc ggcttgcaaa aaattctttg ggttgcggct cgaagataac
    16381 ggctacgacg ggcaggccgc gcgcatcggc ttcgaggcgg agtttttgga ggatgtgttt
    16441 gtgtccgagg tgtacgccgt caaaattgcc tatggttacg gcggccccgt gcggaaagtc
    16501 gggcgcgttg tgccgcccca gcctgattct cattgttatg ttcgggtatg tggtgaaaca
    16561 ggcggtcatt gtaaacggta ttgcggttta tagacagtgt gccgcccgtt acgcccgccc
    16621 gacgcgggaa aagtaggcaa atttcccgca gccgaacgcg ccaaacgcat aaagcgcgca
    16681 gcaggcgcgg tgctatgtgt tgaaacatcg ccccaaacct gatgcaacat cagtgaaaat
    16741 cgttcttttt taaccaggta aaccgagaca aacaaccctc cgccgtcatt cccgcgcagg
    16801 cgggaatccg gacctgtccg cacagaaact tatcggataa aaacagttgc tcaaaccccg
    16861 agattctaga ttcccacttt cgtgggaatg acggttcagt tgcgttccga caacaccgta
    16921 atcttgaaac tcgtcattcc cgctcaggcg ggaatctaga acgtggaatc taagaaaccg
    16981 ttttgcccga taagtttccg tgcggacagg tccggattcc cgcctgcgcg ggaatgacgg
    17041 catttctgcg gcaatcggat tatttccaaa ccaaaagcgc gtgattgcgt ttgccgcgcc
    17101 gaaggatggt gtatttgccg aaacgtttgt gttcgtcggt cagcaggcag gcatcgtcgg
    17161 ggcgttcggc ggcgtggttg gggttgttgg cttcggcagg tttgccgttg agcaaaaccg
    17221 ctttgctgtt cacaaagccg cgcgcttctt tattggagga tgccaaaccg gttttgacca
    17281 aggcttcgac gacattgatg ccgtctgaaa cttcaaatgc aggcaggccg tcgagggcga
    17341 gctgctcgaa gtcgctttcg gtcaggctgc tttggtcttc ggcaaacagg ctttcggaaa
    17401 tgcgctgcgc ggcggcaagg gcttcttcgc cgtgaatcag gcgggtcatt tcttcggcga
    17461 ggatgcgttg cgcttcgggc ttgctgccgc ttgccttgtc tttcgcttcg acggcatcga
    17521 tttcttcgat ggacaggaag gtaaagtatt tcaggaattt atacacatcg gcatcggcga
    17581 ctttcagcca gaattggtag aactgatagg gcgaggtttt tttcgcgttc agccatactg
    17641 cgccgccttc ggttttgccg aatttggtgc cgtctgattt ggtaaccaaa ggcagggtca
    17701 ggccgaacac ttgtttttga ttcaggcggc gggtcaggtc gataccggcg gtgatgttgc
    17761 cccattggtc ggagccgccg atttccaaaa ccgcgccgtg gcgtttgttc aactcggcga
    17821 agtcgtagcc ttgcagcagg gagtaggcga actcggtgaa ggaaatgcct gcgccgtcgc
    17881 ggtcaatgcg ctgtttgacg gattctttgt tcagcatggc gttgacggag aaatgcttgc
    17941 cgatgtcgcg caggaagtca aggcagttca tgctgccgaa ccagtcggca ttgttcgcca
    18001 taatggcggc atttccgcct tcaaagctca agaaaggggt taattggttg cggatacttt
    18061 ccacccagcc ggcaacagtt tcggcggaat tcaagctgcg ttcggcggct ttgaagctgg
    18121 ggtcgccgat cataccggtc gcgccgccca ccaaagcaat cggcgtatgc cccgcctgtt
    18181 ggaagcggcg caatgccaat acgggcagca ggtgtccgat gtgcaggctg tcggcggtcg
    18241 gatcgaaacc gcagtaaagg gcgatttttt gttcgttcaa caaagcgtct aaggcttcga
    18301 tgtcggtcgt ttgcgcgata aggtcgcgcg attgcaggtc ttggatgacg ctcatcggtc
    18361 tctttcaaaa aaattagcgt ttttgcaaac cgccgattgt aacaaattta agcgaatcaa
    18421 tggttatggc gcgtattgag aaaccgttgt ttttcggaaa aacgctttgc caattccgtg
    18481 ccgccgtaag ggttgatgtg gtctgtgtcc gagtaaaccg gcaatccgcc gatttgaaaa
    18541 tctgcgggga tataggcggc ggcatcaata atatagacgt tggggtattt ggctgccaat
    18601 tccctgatgc gtgcattggc tttcagggtg ctttcgtcgt ccgggcgcag ggtttggcgg
    18661 taacccggta tgcgtgaaga caagatatag gcgcgctgga cgttgtaaga cgaggcaagg
    18721 ttgtccgcca tcaggtaaac ggcttgtttt tcggatgaga gtttgtgcag catacggtcg
    18781 aatttttgga aaaaaccggc atcgtaggca agggagcggc tgttttcggg catctggctg
    18841 ccccagcgca tcgccaaaac cacttttgaa taccggggca ggtgttcttc ggcatagcgg
    18901 taaacggcgc ggcaggcggc ccagttttgg aacacgcggg acgcgtagcc tgagaccttt
    18961 gcaaaattcc tttccctccc gacagccgaa accccaacac aggttttcgg ctgttttcgc
    19021 cccaaatatc tcctaattct acccaaacgc ccccttaatc ctccccggat acccgataat
    19081 caggcatccg tgctgccttt taggcggcaa caggcgcact tagcctgttg gcggctttca
    19141 acaggttcaa acacatcgcc ttcagatggc tttgcgcact cacttaatca gtccgaaata
    19201 ggctgcccga gcgtagcgga atttacggtg cagcgtaccg aagctttgtt cgaccacata
    19261 acgggtcttc gataaata
//
LOCUS       DAXHNP010000022        18392 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.022, whole genome shotgun sequence.
ACCESSION   DAXHNP010000022 DAXHNP010000000
VERSION     DAXHNP010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18392
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.022"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            138..572
                     /locus_tag="ACFM5C_000581"
     CDS             138..572
                     /locus_tag="ACFM5C_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HFC6068330.1"
                     /translation="MNFALSVITFTLASFLPVPPAGAAVFTWKDGGGNSYSDVPKQLH
                     PDQSQILNLRTRQTKPAVKPAQADAGKRTDGAAQENNPDTAEKNRQLEEEKKRIAETE
                     RQNKEENCRISKMNLKAVGNSNAKNKDDLIRKYNNAVNKYCR"
     gene            complement(621..1964)
                     /locus_tag="ACFM5C_000582"
     CDS             complement(621..1964)
                     /locus_tag="ACFM5C_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HFC6068331.1"
                     /translation="MFHSVNVFTGETLYRRPAQDYAEFERRLADLKMRGGAFAQLGVT
                     ERAARLQKFADRLEAEKERFAEMVCEEVGRCLHECRAEIGKSIELIRYYARLAPELLA
                     HKTIATQASLSQVRFEPLGVVFAVMPWNYPVWQVLRFAVPAMCAGNACAVKPAPSVAR
                     VSQALFDLASDGIPLAGVWLDEAGTLKAVEDTDAMAFTGSTHTGRILAAHAGANLKKT
                     VLELGGSNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITLFL
                     AECAKLKMGDPKHPDTTLAPLHREDLRDRVHGQVEDAVSNGAVCLTGGKIPQGRGWFY
                     PATVLDRVNPACRVWREEVFGPAALILRAENEEHAIRLANDSPFGLGACIYTADTGCA
                     WRFAEKIQAGSVFINRHTSSDLRLPFGGVKDSGYGRELSEFGLYEFVNVKTYWQK"
     gene            complement(1969..2622)
                     /locus_tag="ACFM5C_000583"
     CDS             complement(1969..2622)
                     /locus_tag="ACFM5C_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFC6068332.1"
                     /translation="MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVAR
                     TAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNL
                     GAQPETGQVRPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYSDIALIIVAGL
                     VVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG"
     gene            2773..3063
                     /gene="gatC"
                     /locus_tag="ACFM5C_000584"
     CDS             2773..3063
                     /gene="gatC"
                     /locus_tag="ACFM5C_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFC6068333.1"
                     /translation="MALTLADVDKIARLSRLHLTAEEKEKSLQELNDIFTMVEQMQTI
                     NTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAGAPEVRNRLYIVPQVIEE"
     gene            3126..4571
                     /gene="gatA"
                     /locus_tag="ACFM5C_000585"
     CDS             3126..4571
                     /gene="gatA"
                     /locus_tag="ACFM5C_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFC6068334.1"
                     /translation="MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITI
                     DQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTA
                     TVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVA
                     ARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAE
                     DCAILLNAMAGFDPKDSTSLEREKEDYTRDLNQPLKGVKIGLPKEYFGEGNSADVQTA
                     LQNTINLLKTQGAELVEVSLPQTKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFG
                     DLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFAR
                     CDLILAPTAPSAAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGFSGGGLPVGV
                     QLVGNYFAEAKILGAAHQIQLNSDWHGKRPE"
     gene            4568..5500
                     /locus_tag="ACFM5C_000586"
     CDS             4568..5500
                     /locus_tag="ACFM5C_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HFC6068335.1"
                     /translation="MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFE
                     QFVNASPIRQGLFLHCPQNAYPLLREFVDRRFNCKRRLDAMTADFLMAEKLFGTDILH
                     QMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHL
                     LTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQV
                     KLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLTDIESKKRSMYRKRYE
                     MLDNMVAEMKDGLKTEARGISDGIQTEKPLRRTA"
     gene            5543..6973
                     /gene="gatB"
                     /locus_tag="ACFM5C_000587"
     CDS             5543..6973
                     /gene="gatB"
                     /locus_tag="ACFM5C_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFC6068336.1"
                     /translation="MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHAGVVECAL
                     PGVLPVMNREVVEKAIKLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEH
                     GKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMR
                     SAAEAVAYAKALHSLVTWLNICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNS
                     FRFLEQAINYEAEAQIEILEDGGKVQQATMLFDPEKGETRVMRLKEDAQDYRYFPDPD
                     LLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAK
                     ESGQGKPTANWMNGELAAALNKEGMELADSPITAPRLAALVGKIADGTLSSKLAKKAF
                     EAMWAEPEATIAEIIEKHGLQQMTDTGAIEAMVDEVLANNAKAVEQFKSGNEKALNAI
                     VGQVMKASKGKANPAQVQELIKAKLA"
     gene            7065..8075
                     /locus_tag="ACFM5C_000588"
     CDS             7065..8075
                     /locus_tag="ACFM5C_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HFC6068337.1"
                     /translation="MNHTVTLPDQTTFAANDGETVLAAAARQNLNLPHSCKSGVCGQC
                     KAELVSGDIQMDGHSEQALSEAEKAQGKILMCRTTAQSDISINIPGYKADALPVRTLP
                     ARIESIIFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANPPDQEGILE
                     LHIRRRKNGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDSGKPVILLATGTGYAP
                     IRSILLDLIRQNSSRAVHFYWGARHQDDLYALEEAQGLACRLKNACFTPVLSRPGEGW
                     QGRKGHVQDIAAQDHPDLSEYEVFACGSPAMTEQAKNLFVQQHKLPENLFFSDAFTPS
                     AS"
     gene            complement(8204..8836)
                     /gene="pdxH"
                     /locus_tag="ACFM5C_000589"
     CDS             complement(8204..8836)
                     /gene="pdxH"
                     /locus_tag="ACFM5C_000589"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HFC6068338.1"
                     /translation="MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPT
                     AVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELE
                     RQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKH
                     PLHVPRPPHWGGYIVIPDLIEFWQGRPSRLHDRIQYRLLDGGWIRERLSP"
     gene            9067..10116
                     /locus_tag="ACFM5C_000590"
     CDS             9067..10116
                     /locus_tag="ACFM5C_000590"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6068339.1"
                     /translation="MSKQPTSKRQWRDGVAPSAKKTAKPFKSKARPKDETDKTASQPY
                     GQKASDGIKPQNLPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKV
                     LAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRI
                     ILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQ
                     RFAHPSFEVEREYAVRVLGGLTGEQMRVLTEEGVMLEDGLAKVERIREQGGEGANKWY
                     NVVIKEGRNREVRRIFESQGLTVSRLVRVGFGPIGLPNRLKRGQFYELNPAEVANIIK
                     WADMLLPGERRRKKA"
     gene            complement(10185..11726)
                     /locus_tag="ACFM5C_000591"
     CDS             complement(10185..11726)
                     /locus_tag="ACFM5C_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HFC6068340.1"
                     /translation="MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPL
                     TKLIGITESAAGDWKLTTVGWIFSIALAMLGASAALFGTWMERVGPRKAIFAAACCFS
                     LGFFVSAFGVSTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIM
                     GFGGGAMLASPLSVSLMNAFSNAASVGVVETFAVLGLLYLALMMFGAFTIRVPADGWK
                     PEGYIAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQEL
                     FSETSIGRQAAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLL
                     YFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAW
                     STAAVIGPVLVNYIRQSQIDSGIPAAQAYSVTMYIMAGLLIIGLLCNLAVKSVHEKHH
                     EKDIKTAAHSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMVFVKA
                     LDLFS"
     gene            complement(12019..13374)
                     /gene="xseA"
                     /locus_tag="ACFM5C_000592"
     CDS             complement(12019..13374)
                     /gene="xseA"
                     /locus_tag="ACFM5C_000592"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFC6068341.1"
                     /translation="MSDFFHSDVLSVSELNAFAKSILENHLAGLWIAGEVSNLTRAAS
                     GHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVAGKISIYETRGEFQITVNEV
                     RLKGLGQLYEAYERLKAQLQAEGAFAEERKKPLPVRPQCIGIVTSLAAAALRDVVTTL
                     KRRAPEIPVIVYPTPVQGTGSEFQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNE
                     EPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQ
                     AQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRASIGKLAQTLSYSMKQNLRA
                     HTARFERQTQALQHYRPDVSVCKNNIVRLQTALPAAFSQLLTHRRQSLTAQAALLEAV
                     SPQHILERGFSVVKDTRGQVIRNADVLKQGQKLHITFADGETDVRVSKEQGQQDLFDC
                     I"
     gene            13571..14392
                     /gene="nadE"
                     /locus_tag="ACFM5C_000593"
     CDS             13571..14392
                     /gene="nadE"
                     /locus_tag="ACFM5C_000593"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HFC6068342.1"
                     /translation="MMRIFSTGGTMDTQAVITHIARWLDEYATQANAKGFVIGVSGGI
                     DSAVVSTLAARTGRPTLLLDMPIRQHPGQLERARLHIRNLQRQYANVSAQTADLTDTF
                     QTFEQTVGIHQTAFDNQPLSLANAKSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGF
                     FTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGAS
                     YPELEWAMGVYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG"
     gene            complement(14463..14936)
                     /gene="dnrN"
                     /locus_tag="ACFM5C_000594"
     CDS             complement(14463..14936)
                     /gene="dnrN"
                     /locus_tag="ACFM5C_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein DnrN"
                     /protein_id="HFC6068343.1"
                     /translation="MTDFSVWETAPFGATVDYILQRYHNVHRAQFEELVPLAQKVVQV
                     HADTFPAEIARLLADMQNELLMHMMKEERMLFPMINQGVGRGAAMPISVMMHEHEEHD
                     RAIARLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS"
     gene            15234..15566
                     /gene="trxA"
                     /locus_tag="ACFM5C_000595"
     CDS             15234..15566
                     /gene="trxA"
                     /locus_tag="ACFM5C_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HFC6068344.1"
                     /translation="MSSELIIHTSDAAFEKDVLNSDTPVLLDFWAPWCGPCKMIAPIL
                     DDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLT
                     AFVEASIA"
     gene            complement(15619..16566)
                     /locus_tag="ACFM5C_000596"
     CDS             complement(15619..16566)
                     /locus_tag="ACFM5C_000596"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6068345.1"
                     /translation="MTDITPFANRLGKNIKHLMKWVKRNGIEAWRIYDRDIPQFPFAA
                     DVYGDRIHLQEYDTGWLMRPEEYEAWLAEVLEAVAFVTGFAPEQIRLKRRERQKGLQQ
                     YEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSY
                     TGSFTVYAATGGAASSETVDLSNTYLDWAKRNFELNGIDTERHKIVRADVFQYLQTAY
                     GEGRRFDLIVMDPPSFSNSKKMLDILDIQRDHKKLIDGAVKLLASDGILYFSNNLSSF
                     VLDDLVSEQYAVKDISKQSVPEDFRNKKIHRCWEIRHKS"
     gene            16894..18282
                     /locus_tag="ACFM5C_000597"
     CDS             16894..18282
                     /locus_tag="ACFM5C_000597"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6068346.1"
                     /translation="MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIM
                     ASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNM
                     RWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEAD
                     RMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQG
                     KIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL
                     HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRI
                     GRTGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKG
                     KGGWGDRKSGGWRGDHKPSKEGFGGKTRGEGFKKEGFKRDGFKKTGEGFKGKRKAGDS
                     FAGKGERRYKDR"
BASE COUNT         4626 a         5382 c         4648 g         3736 t
ORIGIN      
        1 gggaatctgt ttcaccccaa tatataaagc accatattaa ggcggagttt cttccccact
       61 ttgacccgaa cccggaaaag acaccgccca agccaatcct gatgctgccc cgacagccaa
      121 cccttaagga aaccctaatg aactttgctt tatccgtcat cacatttacc ctcgcctctt
      181 tcctgcccgt cccgcctgcc ggagccgccg tctttacttg gaaggacggc ggcggcaaca
      241 gctattcgga tgtaccgaaa cagcttcatc ccgaccaaag ccaaatctta aacctgcgga
      301 cgcgccaaac caaaccggcg gtcaaacccg cccaagccga cgcagggaag cgcacagacg
      361 gcgcggcaca ggaaaacaat cccgacactg ccgagaaaaa ccggcagctt gaggaagaaa
      421 agaaaagaat tgccgaaacc gaacggcaga acaaagaaga aaactgccgg atttcaaaaa
      481 tgaacctgaa ggcggtggga aattcaaatg caaaaaacaa ggatgatttg attcggaaat
      541 acaataacgc cgtaaacaaa tactgccgtt gagcagcctc atcgaaaacc ccatgccgtc
      601 tgaagcggca cggggtttgt ttatttctgc cagtaggttt tgacgttgac gaactcgtac
      661 agcccgaatt cggacaattc gcgcccgtaa ccggaatctt taacccctcc gaaaggcagg
      721 cgcaaatcgc tgctggtatg gcggttgata aacaccgatc ccgcctgtat tttttcggca
      781 aaccgccagg cgcatccggt atcggcggta taaatgcagg caccgagccc gaacggggaa
      841 tcattggcaa ggcggatggc atgttcttcg ttttcggcgc gcaaaatcag ggcggccggc
      901 ccgaatactt cttctctcca gacgcggcag gcaggattta ccctgtctaa aaccgtcgcg
      961 ggataaaacc agcctcgccc ttgtgggatt tttccgccgg tcaggcatac cgcgccgttt
     1021 gaaacggcat cttcaacctg cccgtgaacc ctgtcccgca aatcttcgcg gtgcagcggt
     1081 gcaagcgtag tatcgggatg tttggggtcg cccattttca atttagcgca ttcggcaaga
     1141 aacagcgtga taaaacgatc ggctgcggct tcggttacga tgatgcgctt ggcggcgtta
     1201 cacgattgcc ccgcatcgcg gaaacgggaa taacaggctt ctgcggcggc acgctccaaa
     1261 tcagcatcgg gcatcacgat aaaggcgttg ctaccgccga gctccaacac ggttttctta
     1321 aggtttgcgc ccgcgtgtgc cgcaaggatg cgccccgtat gcgttgaacc ggtaaacgcc
     1381 attgcatcgg tatcttcaac cgccttgagc gtgcccgcct catccagcca cacgcctgcc
     1441 agaggaatgc cgtctgaagc caaatcgaac agtgcctgac tgacgcgtgc cacgctgggc
     1501 gcgggtttga cggcgcacgc gttgcccgcg cacatagcgg gaacggcgaa acgcaatacc
     1561 tgccagacgg gatagttcca aggcatgacg gcaaacacca cgcccaaagg ctcgaagcgc
     1621 acctgactca aactcgcctg cgtcgcgatg gttttgtggg caagcagttc gggggcaagg
     1681 cgggcgtaat agcgtatcag ttcgatagac ttgccgattt ccgcacggca ttcgtgcaag
     1741 cagcgtccga cttcctcaca caccatttcc gcaaaacgct ctttctccgc ctccaaacgg
     1801 tcggcaaatt tttgcaggcg cgcggcacgt tcggttacgc ccagttgcgc gaacgccccg
     1861 ccgcgcattt tcaaatccgc cagccgccgt tcaaactccg cataatcttg agctggacgg
     1921 cggtaaagcg tttcgcccgt aaatacattg acactgtgaa acatcgaatc aacctgccag
     1981 ttgcgggaat atcgttttca gtcccgacac aataatctcc accgataccg ccgccagcat
     2041 catacccatg atacggttta aaatcgtcag ccccgtcgcg cccagcaggc ggctgacctt
     2101 cccggcaacg attaaaatgg cataacaaat cgcactgacc accaaaccgg ccacgataat
     2161 cagcgcgatg tcgctgtacg ttttggctgc cgaagcgtaa ataatcacgg tcgaaatacc
     2221 gcccgggccg atggtgatcg gtatggcgat gggcacgacg gcaatcgctc cggcattgcg
     2281 ggcggggcgc acctgccccg tttccggctg cgcgccgaga ttctgcttgg cgggattgtc
     2341 gttgccgttc atcatcgaaa tggcaatcag caacaccaaa attccgccgc cgacctgaaa
     2401 cgaaccgacg ctgatgccca aaaccttcag cagcgtaccg ccgatcagcg caaataccgc
     2461 aatcacggca aacacggcaa cggcggccgt ccgcgcgacc ttcctgcgct ccttcgtgct
     2521 gtgcccgttg gtcaggtcaa ggtaaagcga caacgcgcta aacggattaa tcagcaccaa
     2581 aaaagccaca atcagcttgc cgatttccat gcccaatccc attatttccc cctccttcaa
     2641 acccgtgcgg caggcatccg atgctgcaaa ttgccgccgc aacggatttt tccgttataa
     2701 ttaaaaattc aagcaatacg ccccatcata cccgaacgac ggtatcttta ccatcagaca
     2761 aggatgcttt tcatggcact gacacttgcc gacgtagaca aaatcgcccg actctcccga
     2821 ctgcacctga ctgcggaaga aaaagaaaaa tcgcttcaag aattaaacga cattttcact
     2881 atggtcgaac agatgcaaac catcaacaca gacggcatcg aaccgatggc gcacccgcac
     2941 gaggccgccc tgcgcctgcg cgaagacgaa gtaaccgaaa ccgaccgcgc cgccgaatat
     3001 caggcgggtg ctccggaagt acgcaaccgt ctgtacatcg taccgcaagt tatcgaagaa
     3061 taatccgaat atgcttcaga cggcatcagc aataccgccc gaagcccttt aaggatggaa
     3121 gatttatgac ccaatacaca ttgaaacagg caagcgtcct gttgcagtcc aaacagattt
     3181 ccgccgtcga actggcaagc gcataccttg ccgccatcgc cgaaaaaaat cccgccctca
     3241 acggctatat caccatcgac caagataaaa cccttgcaga agcccgtgcc gccgacgaac
     3301 gtatcgcgca gggcaacgcc tccgcgctta ccggcgtacc cgtcgcctac aaggatattt
     3361 tctgccaaac cggctggcgc agcgcgtgcg cttccaaaat gctcgacaac ttcatctccc
     3421 cctacaccgc caccgtcgtc caaaacctgc tcgacgaagg tatggtaacg ctcggccgca
     3481 ccaatatgga tgagttcgct atgggttcga ccaatgaaaa ctcattctac ggtgcagcca
     3541 aaaacccatg gaatcttgag cacgtccccg gcggttcgtc aggcggttcc gccgccgtcg
     3601 ttgccgcgcg cctcgcccct gccgcgctcg gttcggacac cggcggctct atccgccagc
     3661 ctgcatcgca ctgcggcatt accggcatca aacccacata cggcacggtt tcccgcttcg
     3721 gtatggtcgc ctacgcctcc agcttcgacc aggccggtcc gatggcgcaa accgccgaag
     3781 actgcgcgat tctgttgaac gcgatggcag gtttcgaccc caaagactcc accagcctcg
     3841 aacgcgaaaa agaagactac acccgcgatt tgaaccaacc gctcaaaggc gtgaaaatcg
     3901 gcctgcccaa agaatatttc ggcgaaggca acagcgccga tgttcagacg gcattgcaaa
     3961 atactatcaa cctcctcaaa acccaaggcg cggaattggt cgaagtttcc ctgccgcaaa
     4021 ccaagctgtc catccccgcc tactacgtcc tcgcctccgc agaagccagt accaaccttt
     4081 cacgttacga cggcgtacgt tacggacacc gtgccgccca attcggcgat ttggaagaaa
     4141 tgtacggcaa aacccgcgcc gaaggttttg gcagcgaagt caaacgccgc atcatgatcg
     4201 gcacttatgt actgtcgcac ggctactacg atgcctacta tctcaaagcc caaaaactgc
     4261 gccgcctcgt tgccgatgat tttcagacgg catttgcacg gtgcgacctc atcctcgcgc
     4321 cgaccgcacc ctccgccgca cccaaaatcg gagcggatgc ttcgccggtt gaaacctact
     4381 tgagcgatat ctacaccatc gccgtcaacc tcgccggact gcccgcattg accctgcccg
     4441 caggcttcag cggcggcgga ctgcccgtcg gcgttcagct tgtcggcaac tacttcgccg
     4501 aagccaaaat cctcggtgcg gcgcatcaaa tccaactcaa cagcgattgg cacggcaaac
     4561 gacccgaatg aagcagaacc gcacctttac cttccccgat tttcgcaccg tttacagcta
     4621 tgcgccttta tatcggctgc aacatttaaa atacacattg cgaaaatttt tcggaaaaaa
     4681 agaaatttac gccttcgagc agtttgtcaa cgcatcccct atccgtcagg ggctgttcct
     4741 ccactgcccg caaaatgcct atccgctgct gcgcgaattt gttgacaggc gttttaactg
     4801 caaacgccgt ttagatgcga tgacggcaga ttttctcatg gcggaaaaac tgttcggcac
     4861 agacatcctg caccaaatgg aagactaccg cttccatttg gtcttggcgc acctttcaga
     4921 cggcatcagc ttgtggctca accgcaacga caactgcgtc gaagaaggcg cgtggtcttt
     4981 atctttgcgc gacgaagcag gcaaccggct gtatatggcg accttcgcct ttgtcggcac
     5041 acacctgctg acagcctccg tacaagggcc ggcgggtgaa gaagccaaag acaccgtccg
     5101 ccgcataacc aaacaactcc acggcttgcg tccccaacaa ctgatggtaa ccgccctgca
     5161 atatttcgcc gccgtactcg gcttggacgg cgcaatgggc attgcacaaa aacatcaggt
     5221 caaactgcgc tggaaactta aaaagcgtgt caaaatgaat tacgacgcat tctggcagga
     5281 atacggcgca agtttggaac gggacggcta ctggcatctc ccccaaaccc ccgcccgcaa
     5341 agaccttacc gacatcgaaa gcaaaaaacg ctcgatgtac cgcaagcgtt atgaaatgct
     5401 ggacaatatg gttgcagaga tgaaggacgg tctgaaaaca gaagcacgcg gcatttcaga
     5461 cggcatccaa acggaaaaac cgctccgccg gacagcctga cgcgaagact atcgaattga
     5521 tattttagag aaagaagctc ttatgacctg ggaaaccgta atcggcttgg aaatccacgt
     5581 ccaattgaac accaaatcca aaatcttcag cggcgcatcg accgcattcg gcgcagaacc
     5641 caacgcgcac gccggcgtag tggaatgtgc tttgccgggc gtactgccgg taatgaaccg
     5701 agaagtcgtt gaaaaagcca tcaaattagg cttggctttg gatgcgaaaa tcaaccggaa
     5761 aaacgtgttc gaccgtaaaa actacttcta tcccgactta ccaaaaggct atcaaatcag
     5821 ccagttggac ttaccgattg tcgaacacgg caaattggaa atcgtagtcg gcgacgatgt
     5881 gaaaaccatc aacgtaaccc gcgcccatat ggaagaagac gcgggcaagt ccgtacatga
     5941 aggcttgaac ggcgcgaccg gtatcgattt gaaccgcgcc ggcacgcctt tattggaagt
     6001 cgtatccgaa cccgaaatgc gctccgccgc cgaagccgtt gcctacgcca aagccttgca
     6061 cagcttggta acctggctga acatttgcga cggcaatatg gcggaaggtt cgttccgcgt
     6121 cgatgccaac gtatccgttc gcccgaaagg tcaagcggaa ttcggcacgc gccgcgagat
     6181 taaaaacctc aattccttcc gtttcttgga gcaggcgatt aattacgaag cagaagcgca
     6241 aatcgagatt ttggaagacg gcggcaaagt acagcaggca acgatgctgt ttgatcccga
     6301 aaaaggcgaa acccgcgtaa tgcgcctgaa agaagacgcg caagactacc gctacttccc
     6361 cgaccccgat ttgctgcccg tcatcatttc agatgcccaa atgcaaaaag ccaaagcaga
     6421 aatgcccgag ctgccgaaag aaatggcagc gcgtttcgtg gcggactacg gcgtgtccga
     6481 atacgacgcg cgcctgctca ccgcaagccg cgcacaggcc gcctattttg aagaagccgc
     6541 caaagagagc ggacaaggca agccgactgc caactggatg aacggcgaac tcgccgccgc
     6601 actgaacaaa gaaggcatgg aacttgccga cagcccgatt accgctccgc gcctcgccgc
     6661 gctggtaggc aaaatcgccg acggcacatt aagcagcaaa ttagcgaaaa aagcctttga
     6721 agccatgtgg gcagaacccg aagccactat tgccgaaatc atcgaaaaac acggtttgca
     6781 gcaaatgacc gataccggcg cgattgaagc catggtggac gaagtgctgg caaacaacgc
     6841 caaagccgtg gaacagttca aatccggcaa cgaaaaagcc ctgaatgcga ttgtgggaca
     6901 agtgatgaag gccagcaaag gcaaagccaa ccccgcgcag gttcaagagc tgattaaagc
     6961 caaacttgcc tgacaagcaa gatgccgtct gaaacccaaa tccgacgttc agacggcatt
     7021 ttcacagtct gaccacatta aaacagcata aaaaacaata ttccatgaac cacaccgtta
     7081 ccctgcccga ccaaaccacc tttgccgcca acgacggcga aaccgttttg gccgctgccg
     7141 cccgacaaaa cctcaacctg ccccattcct gcaaaagcgg tgtctgcgga caatgcaaag
     7201 ccgaactggt cagcggcgat attcaaatgg acggacactc ggaacaggct ttatccgaag
     7261 cagaaaaagc gcaaggcaag attttgatgt gccgcaccac cgcgcaaagc gatatcagca
     7321 tcaacatccc cggctacaaa gccgatgccc tacccgtccg caccctgccc gcacgcatcg
     7381 aaagtattat tttcaaacac gatgtcgccc tcctgaaact tgccctgccc aaagccccgc
     7441 cgtttgcctt ctacgccggg caatacattg atttactgct gccgggcaac gtcagccgca
     7501 gctactccat cgccaatccg cccgaccaag aaggcatttt ggaactacac atccgcaggc
     7561 gcaaaaacgg tgtctgctcg gaaatgattt tcggcagcga acccaaagtc aaagaaaaag
     7621 gcatcgtccg cgttaaaggt ccgctcggtt cgtttaccct gcaggaagat agcggcaaac
     7681 ccgtcatcct gctggcaacc ggcacaggct acgcccccat ccgcagcatc ctgctcgacc
     7741 ttatccgcca aaacagcagc cgcgccgtcc atttctactg gggcgcgcgt catcaagatg
     7801 atttgtatgc cctcgaagaa gcacaagggt tggcatgccg tctgaaaaac gcctgcttca
     7861 cccccgtatt gtcccgcccc ggagagggct ggcagggaag aaaagggcac gtacaagaca
     7921 tcgcggcaca agaccacccc gacctgtcgg aatacgaagt atttgcctgc ggctctccgg
     7981 ccatgaccga acaagcaaaa aatctgtttg tgcaacagca taagctgccg gaaaacttgt
     8041 ttttctccga cgcattcacg ccgtccgcat cataattccc cggtataaaa aagattcagg
     8101 ctttccgttc ggaacacaaa aaacttcccg tccgtatttt ccccataaaa aatgccgtct
     8161 gaagcccgat tccggttttc agacggcata tgttttttcc tgttcaaggc gacagccgct
     8221 cgcgtatcca gccaccatcc agcaaacggt attggatgcg gtcgtgcagc ctgctcggcc
     8281 tgccctgcca aaactcaatc aaatcgggaa tcacaatata gccgccccaa tgcggcggac
     8341 gcggcacgtg caaaggatgt ttgagtccga ccgccgccgc ctttgccacc aataccgcct
     8401 tgttcggaat cacctcgctc tgcgcacttg cccacgcacc caaacggctc tgatacgggc
     8461 ggctctcaaa atattcgtcc gacaacttct ccgccagcct ttcaacacgc ccttccacgc
     8521 gcacctgacg ctccagctcc ggccaaaaaa acgtcatcgc cgcaaatgga tgagcatcca
     8581 gcgaacgtcc cttacggctg tgataattcg taaagaaaac aaaaccttca gaattaactt
     8641 ccttcagcag caccatacgg ctgttgggtc tgccgcgtcc gtcgaccgcc gccacattaa
     8701 ccgccgtcgg ctcgttgacc tgtgcgcgta ccgcctcgtc caaccaccgc tcgaactgct
     8761 cgatcggatt gtcggcgcaa tcgccttccg acaattcccg tttactgtaa tcttcccgaa
     8821 tattgtgcaa atccatttac cgctcctctt gtcatttgaa agattctacc cccgcacgca
     8881 aaccgatttc aaccgttgca caaactttgc ctcgcttctc caaacctcag gacacaacga
     8941 tttcatccgc aaaaccgccg cataaggtac aatatcgaac cgtccgaccg agggcggcat
     9001 tttatcaacc cgtcctgccg cacacgccgc agaagaaccg ccttatcagg cgagttagga
     9061 aaaatgatgt ccaaacagcc caccagcaaa cgccaatggc gcgacggcgt agccccgtct
     9121 gccaagaaaa ccgccaaacc tttcaaaagc aaagcccgtc ccaaagacga aacggacaaa
     9181 accgcatccc aaccttacgg acaaaaagct tcagacggca tcaaacctca aaacctcccc
     9241 aaacagcgcg ccgccaaagc caaaaaactc gtcgtccgca atcccaacca aaaaattatg
     9301 gaacacgcgc gcgatttaaa agaacgccgc agcgacctat cgcgcatgga acccgaacgc
     9361 ctgcaaaaag tgcttgccgc gtccggcgtc ggctcgcgcc gcgaaatgga agaatggatc
     9421 aacaacggct gggtaacggt caacggcaaa accgcgcaac tgggcgacaa agtcaccccc
     9481 gacgaccacg ttaccgtcaa aggcagcatc atcaaactca aatgggccga ccgcctgccg
     9541 cgcatcatcc tatattacaa acaagaaggc gaaatcgttt cccgcgacga cccgcaaggc
     9601 cgcgtcagca tattcgaccg cctgccgcag gccgccagca gccgctgggt cgccatcgga
     9661 cgcttggaca tcaacaccag cggacttctg attctcacca cctccggcga actcgtccaa
     9721 cgtttcgccc accccagctt cgaagtcgaa cgcgaatacg ccgtgcgcgt cttgggcggg
     9781 ctgaccggcg aacaaatgcg cgtcctcacc gaagaaggcg tgatgctcga agacggcttg
     9841 gcaaaagtcg aacgcatccg cgaacaaggc ggcgaaggcg cgaacaaatg gtacaacgtc
     9901 gtgattaaag aaggccgcaa ccgcgaagtg cgccgcattt ttgaaagcca agggctcacc
     9961 gtcagccgcc tcgtgcgcgt cggcttcggt cccatcggac tgcccaaccg cctcaaacgc
    10021 gggcagttct acgaactcaa ccccgccgaa gtcgccaaca tcatcaaatg ggcggacatg
    10081 ctgctgccgg gcgaacgccg ccgcaaaaaa gcctaaaccc gccaaaacac aaaaatgccg
    10141 tctgaaacat ctgctgtttc agacggcatt ttattcgggc gttttcagga gaaaaggtcg
    10201 agtgctttga caaagaccat caccacgccg taggcgagcg gtatgacggc caatgcccaa
    10261 cgccaccaga ccgatatgcc gccgccggaa actttttcgc ccacaaggta agcgtcggat
    10321 atggcggttt cgtcatcggg gttgccgctg tgtgcggcgg ttttgatgtc tttttcgtgg
    10381 tgtttttcgt gtacggattt gacggcgagg ttgcacaaca aaccgataat cagcagaccc
    10441 gccatgatgt acatggttac gctgtatgcc tgtgccgccg gtatgccgct gtcgatttgg
    10501 ctttggcgta tgtaattgac cagtaccggg ccgatgacgg cggcggttga ccaggccagc
    10561 aggatgcgcc cgtgaatcgc gccgacctga taggtgccga acaggtcttt caggtaggcg
    10621 ggaatggcgg caaatccgcc gccgtacatg gaaataatca cgcaaaagcc gatgatgaac
    10681 agggctttgc tgccgccctc gccgatggag ggaacggcga aatacagcag cgaaccgagt
    10741 acgaagaaga tggtgtaggt gtttttgcgt ccgattttgt cggaaacgct cgaccacaaa
    10801 aagcgtccgc ccatgttaaa caggctcagg aggctgacga agcctgccgc cgcacctgcg
    10861 ccgactgctg cctgcctgcc tatggaggtt tcggaaaaga gttcctgaat catcacggat
    10921 gcctgaccca atacgccgat gccggcagtt acgtttaggc acaataccca aaacaacagc
    10981 caaaactgcg gcgttttcat ggcttgggac acgttgacat gattgctgct gaccagcttg
    11041 ttttgcgttt tcggcgcgat atagccttca ggtttccagc cgtcggcagg tacgcggatg
    11101 gtaaacgcgc cgaacatcat cagtgcgagg taaagcagtc ccaatacggc aaaggtttca
    11161 acaaccccga ccgaagcggc gtttgaaaag gcgttcatca gtgatacgga aagcggtgag
    11221 gccagcattg cgccgccgcc gaaacccata attgccaaac cggtcgccat acccggcttg
    11281 tcgggaaacc atttcatcag tgtggaaacc ggcccgatgt agcctaagcc taagcctacg
    11341 ccaccgatga cgccgttgcc caaataaagc aggaagaggt tgtgcgtact cacgccgaat
    11401 gcggatacga agaagcccag gctgaaacag caggcggcgg caaatatggc tttgcgcggc
    11461 cctacccgtt ccatccatgt gccgaacagg gcggccgacg cgcccagcat cgcgagtgcg
    11521 atactgaaaa tccaacctac ggtcgtcagc ttccaatctc cggccgccga ttcggttatg
    11581 ccgataagtt tggtcagcgg cgcgttgaat acggaatagg cgtaaatctg cccgatggca
    11641 aggtgtaccg ccaatgctgc gggcggtacg agccaacggt tgaaacccgg cttggcaatg
    11701 cttgcctcac ggtctaaaaa cttcataaca tcctctttct gtcagttgaa aaataaaatt
    11761 tcatttgctc aatggaaact tattgaaaat tataaaaaaa tatcgggtcg ggtttttatc
    11821 cgccccaaga tgcgccgtct gaaacatttc gggtgtacgg aaaggtttct gttttttccg
    11881 acaaattcct gcggcttttc gcttccggat tcccgctttt gcgggaatga cgaattaaag
    11941 attatcttaa ggtcaaggga ctggattccc gctttcgcgg gaatgacggc ggagggggag
    12001 cggtttttcc gattgggttt aaatgcaatc gaacaaatcc tgctgccctt gttctttgct
    12061 tacgcgcacg tcggtttcgc cgtcggcgaa ggtaatgtgc agcttctgcc cctgcttcaa
    12121 aacatcggcg ttgcggatga cttgtccgcg tgtatctttg acgacggaaa agccgcgttc
    12181 caaaatgtgc tgcggcgaaa cggcttcgag caatgcggct tgggcggtca ggctttggcg
    12241 gcggtgggta agcagttggc tgaaggcggc gggcaatgcc gtctgaaggc ggacgatgtt
    12301 gtttttgcaa acggaaacat caggacggta atgttgcagg gcttgggttt ggcgttcaaa
    12361 acgggcggtg tgggcacgga ggttttgctt catagagtaa gacagcgttt gcgccagctt
    12421 gccgattgaa gcgcgctgct catcaagttt ttggcgcgga tgacggattt gccgcgcaag
    12481 ccagtcgagt ttttggctgg catcgaaata gcgttgttcc aaaacggttt tcagacggcc
    12541 ttgcgcctgg gcgagacgat gtagcgattc ttggcggttg gggctgacca gttccgccgc
    12601 gccggtcggc gtgggcgcgc gcacgtcggc gacaaaatcg gcaagcgtga aatcggtttc
    12661 gtgtcccacg ccactgacga cgggaaccgt gcaggcttcg attgcgcgta cgaccggttc
    12721 ttcgttaaac gcccacaaat cttcaatgct gccgccgccg cgacagacaa tcaacacgtc
    12781 gcattcggcg cgttgcgatg cggttttaat cgcttgggca atctgaaact cgctgcctgt
    12841 gccttgaaca ggtgtcggat aaacgataac gggaatttcg ggcgcgcggc gtttcaaggt
    12901 ggttacaaca tcgcgcaatg ccgccgccgc caaactggtt acgatgccga tacattgagg
    12961 gcggacgggc aacggttttt tgcgttcctc cgcaaacgcg ccttccgcct gcaactgcgc
    13021 cttcaaccgc tcataggctt cgtaaagctg ccccaaacct ttgagccgca cttcgttcac
    13081 ggtaatctga aattcgcccc gcgtttcata aatactgatt ttgcccgcca cttcgatatg
    13141 gtcgccttct ttcaaaggtt tcgccaaacg cgccgccgca cccttgaaca tcgcgcaacg
    13201 cacctgcgcg cggctgtctt tgagcgagaa ataataatgc ccgctggcgg cacgggtcag
    13261 gttggacact tcgcccgcaa tccacagacc ggcaaggtgg ttttccaaaa tacttttggc
    13321 aaatgcgttc aactcggaaa cggacaacac gtcagaatgg aaaaaatcag acatcgaatc
    13381 aatcaaatag taaaaaatat gaatatgttt tgaagcccaa ggcggcatag agccgcctaa
    13441 attgtcaaca atattataac acgcgccatc ttgccgcccg actttgcccg tatgactttt
    13501 ttaagcgggg aatgggaaaa atattcatca acctgcctgc aatctattca aattgaaccg
    13561 ccgacaagct atgatgcgga tattttcgac aggaggaacc atggatacgc aggcagttat
    13621 cacacatatc gcccgatggt tggacgaata cgccactcag gcaaatgcaa aaggattcgt
    13681 cataggcgtt tccggcggca tcgattccgc cgtcgtctcc acactcgccg cccgcaccgg
    13741 ccgccccacg ctgcttctgg atatgccgat acgccaacac cccggccagc ttgagcgggc
    13801 aaggctgcac atccgcaatc tgcaacggca atatgccaat gtaagcgcgc aaacggccga
    13861 tttgaccgac accttccaga cctttgaaca aaccgtcggc attcatcaga cggcatttga
    13921 caatcagccg ctttccctcg ccaacgccaa aagccgcctg cgtatgctga ccctgtacta
    13981 ctacgggcag atacacggac tgctggttac ggggacaggt aataagattg aagatttcgg
    14041 cgtgggattt tttaccaaat acggcgacgg cggcgtagac atcagcccga ttgccgacct
    14101 gaccaaaacg caggtttacc ggcttgccga agcattgggc gtggacgagg cgattcaaaa
    14161 agccccgccg accgacggcc tgtgggatac ggaacgcacc gacgaagaac agatgggcgc
    14221 aagctatccc gaactggagt gggcaatggg cgtgtacggc acgcgcaaac ccgaagattt
    14281 tgaagggcgg cagcgcgaag ttctggaaat ctatacgcgg ctgcaccgcg cgatgcagca
    14341 caaaatcaac ccgattcccg tgtgccgcat tccgcccgaa ttgttgggct gaaacgtgga
    14401 aatgccgtct gaagcggaaa aaccgtattt cagacggcat ggaaatatcc ggctcccgtt
    14461 ccttaagaat cgagtacgcg ggcaaacaga atatcgtttt ccaaatgaat gtggtcgttc
    14521 aaatcctcca ccatttcttt ggccaaagcg taaaggcgcg tccagcttcc gcaagcccct
    14581 tctggcggtt ggaaattgtc ggtcagctct ttgagccgtg cgatggcgcg gtcgtgttct
    14641 tcgtgttcgt gcatcatcac gctgatgggc attgccgcac cgcgtccgac accctgatta
    14701 atcatcggaa acagcatcct ttcctctttc atcatatgca tcagcagttc gttctgcata
    14761 tcggcaagca gcctggcaat ttccgccgga aaggtatcgg catggacttg gaccactttc
    14821 tgcgccagcg gcaccaattc ttcaaattgt gcgcggtgga cattgtggta gcgttgcagg
    14881 atataatcga cggttgcgcc aaagggggct gtttcccaaa cggaaaaatc agtcattgca
    14941 gtgttccttt tatagggttt cgggtttggt tttgaacatt catactttaa gaatctattt
    15001 aaacggagca tacaccgccc gcgcgtttct gtacagcttc aaaaacattc cttacacttt
    15061 gataataaaa gtaattttca aaaataaaat actgtccgaa ccgtttttta gaatttgcaa
    15121 aggcgattgg ggcggtacag aaaaactatt atcccgcccg cccacttgaa atttttatgc
    15181 ccaagcccta tcctgcacgc tatcgtgcca atcccaaccg aaaaggaaaa ataatgagca
    15241 gcgaattgat tatacacacc agcgatgccg cttttgaaaa agacgtttta aattcagata
    15301 cccccgtcct gctggacttt tgggctccgt ggtgcggccc ctgcaaaatg attgccccga
    15361 ttttggacga catcgccgcc gaatttgaag gccgtctgaa agtggtcaaa atcaacatcg
    15421 acgacaacga agccaccccg tcccgtttcg gcgtgcgcgg cattccgacc ctgatggtgt
    15481 tcaaaaacgg cgaagtcgtg gctaccaaag tcggcgcatt ggcaaaaggt cagctgaccg
    15541 cctttgtcga agcctccatc gcctgataaa gcgcaatcga aaaagccgcc ggaagattcc
    15601 ggcggctttt tcgcaccctt aagatttgtg gcggatttcc cagcacctat ggattttttt
    15661 gttgcggaaa tcttcgggaa cggattgttt ggaaatgtct ttgacggcgt attgttccga
    15721 taccaagtcg tctaagacga agctgctcag gttgttggaa aagtacaaaa tgccgtctga
    15781 agcgagcagc ttcaccgcgc cgtcaatcag ctttttgtgg tcgcgctgga tgtcgagaat
    15841 gtcgagcatc tttttgctgt tggagaagct gggcgggtcc atcacaatga ggtcgaaccg
    15901 cctgccttcc ccatatgccg tctgaagata ttgaaacacg tcggcgcgga cgattttgtg
    15961 tcgttccgta tcgatgccgt tcaattcaaa attgcgtttc gcccaatcaa gatatgtgtt
    16021 ggacaaatcg acggtttcgc tggatgccgc gccgccggtg gcggcataga cggtgaagct
    16081 gccggtgtag gaaaacaggt ttaaaaaacg tttgcccgcc gccgtttcgc cgactttttt
    16141 gcgcgtgttt cgatgatcca aaaaaagccc cgtatccaaa tatttatcaa ggttgaccca
    16201 aaacttgcgg ccgttttcgg tgatgacgaa atcgtcgccc gccttgccgg ttttctcgta
    16261 ctgctgcaaa cctttttggc gttcgcggcg tttgaggcgg atttgttcgg gcgcaaaacc
    16321 ggtaacgaaa gcgacggctt ccaagacttc ggcaagccac gcttcgtatt cttcgggccg
    16381 catcagccag ccggtatcgt attcctgaag gtggattcga tcgccgtaaa catcggcggc
    16441 aaaggggaat tgggggatgt cgcggtcgta aatgcgccag gcttcgatgc cgttgcgttt
    16501 cacccatttc ataaggtgtt tgatgttttt gcccaagcgg ttggcaaacg gtgtgatgtc
    16561 ggtcattggt ttcaggcgga ataaagtgga aaacggcaat tttactgtaa ttaacgcccg
    16621 attgcttgac cgtttcgggc aaaccctata ccatccgtcg cttatcttgt catacgaagc
    16681 catcgccttc caacctaaac cgcccttacg ggcgcgtttc ttctgttgct ttgattttgc
    16741 aaagcatatc tgtgcaggtt gccgtcgatg taaaccacaa gcaagccgct tgcgacaacc
    16801 ctgtaacttc acattccccg tatcgttacc cttccctgct tcaggccgtc tgaacctttc
    16861 ggacgcgggc gttgttgtct tccaaggata gccatgtcta ttaaatttgc cgatttgaac
    16921 cttgataaaa acattttgtc cgccgtcagc agcgagggtt acgaaagccc gaccccgatt
    16981 caggcgcaag ccattccgtt tgctttggaa ggccgcgaca tcatggcttc ggcgcaaacc
    17041 ggctccggca aaaccgccgc ctttctgtta ccgactttgc aaaaactgac caaacgcagc
    17101 gaaaaaccgg gcaaaggccc gcgtgctttg gtgttgaccc cgacccgcga actggcggct
    17161 caagtcgaga aaaacgcgct ggcgtatgcc aaaaatatgc gttggttccg caccgtcagc
    17221 atcgtcggcg gcgcgtcttt cggctaccaa acccgtgccc tgagcaaacc ggtcgatctg
    17281 attgtcgcca cgccgggccg tctgatggac ctgatgcaaa gcggcaaagt tgattttgaa
    17341 cgtttggaag tgctgatttt ggacgaagcc gaccgtatgt tggatatggg ctttatcgac
    17401 gacatcgaaa ccatcgtgga agcaacgccg agcgaccgtc agactttgtt gttctccgcc
    17461 acttgggacg gcgcggtcgg caaactggcg cgcaaactga ccaaagaccc tgaaatcatc
    17521 gaagtcgaac gcgtggacga tcaaggcaaa atcgaagaac aactgctgta ctgcgacgat
    17581 atgcgccaca aaaaccgcct gctcgatcat atcttgcgcg atgccaatat cgatcaatgc
    17641 gtgattttca cgtccaccaa agccatgacc gaagtcattg cggatgaact gtacgaaaaa
    17701 ggtttcgccg caaactgcct gcacggcgat atgccgcaag gctggcgcaa ccgcacgctg
    17761 atggatttgc gtaaaggccg ctgcaaaatt ttggttgcca ccgatgttgc cgcacgcggt
    17821 atcgacgtac cgaccattac ccacgttatc aactacgacc tgccgaaaca ggcggaagac
    17881 tacgtccacc gcatcgggcg caccggccgc gcaggccgca cgggtattgc gattacgttt
    17941 gccgaagtga acgaatacgt caaagtccac aaaatcgaaa aatacattaa ccgaaaactg
    18001 cccgaactga ccatcgaagg catggaaccg acccgcaaac gcaaatccgc aggcggcaag
    18061 ccgaaaggca aaggcggctg gggcgatcgt aaatccggcg gttggcgcgg cgatcataaa
    18121 ccgagcaaag aaggcttcgg cggcaaaacg cgcggcgaag gtttcaagaa agaaggcttt
    18181 aagagagacg gtttcaaaaa aaccggcgaa ggcttcaaag gcaaacgcaa agccggcgat
    18241 tcttttgcag gcaaaggcga acgccgttac aaagaccgct aagccccaac ctgccgcata
    18301 aaccaatgcc gtctgaaacc gatttcgagt ttcagacggc atttttgcaa tgtttcagca
    18361 ccgcccggct ttgataccca aaggattaat ct
//
LOCUS       DAXHNP010000023        18302 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.023, whole genome shotgun sequence.
ACCESSION   DAXHNP010000023 DAXHNP010000000
VERSION     DAXHNP010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18302
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.023"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(31..1557)
                     /locus_tag="ACFM5C_000598"
     CDS             complement(31..1557)
                     /locus_tag="ACFM5C_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HFC6068347.1"
                     /translation="MKTRSLISLLCLLLCSCSSWLPPLEERTESRHFNTSKPVRLDNI
                     LQIRHTPHTNGLSDIYLLNDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNL
                     VYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVFRKWRALGYLTDF
                     PRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSHDF
                     DRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
                     RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGT
                     DALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPAT
                     KDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMER
                     TLADTTPKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
                     "
     gene            complement(1669..3075)
                     /locus_tag="ACFM5C_000599"
     CDS             complement(1669..3075)
                     /locus_tag="ACFM5C_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6068348.1"
                     /translation="MEKNTLSARAPSPWLPLLLAIAIFMQMLDATILNTALPEIAADM
                     NESPLDMQLAVVAYTLTVALLIPLSGYLADRFGTKKVFFGSIAVFMLGSALCAASGSL
                     FELTLSRVVQGIGGSMLVPIPRLTILRVYDKSKLLNAINYAVMPALIGPVLGPLAGGY
                     LVEYASWHWIFLLNLPIGLLGFILGRNIMPDIKGSNISLDFKGYLIFSAAACLLLLSA
                     ESLSHALPPYFALLPLCGGLLFARRYFRHMKTASKPIYSADLFLIRTFRLGLAGNLFS
                     RLGISSIPFLMPLMFQVAFGFGASLSGWLVAPVALSSLLVKPLIAPLMKRFGYRTVLL
                     WNTKLLAAFIMLLALPDGNSSLWIWIFLSLAIGACNSLQFSAMNTLTLAGLRPQQTGS
                     GNSLMAVNQQLAISMGIVVGALILKNWTFLIPASSGLHSAFRMTLLSIGGITLASSLV
                     FKRLHVSDGANLTRNTPS"
     gene            3359..4138
                     /locus_tag="ACFM5C_000600"
     CDS             3359..4138
                     /locus_tag="ACFM5C_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFC6068349.1"
                     /translation="MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAIALIEQ
                     QGIRVHFPMAQSCCGQPAYSSGHPTEAFDVARAQLDLFPEEWPIVVPSGSCGGMMKHH
                     WPTLFKGSEYEERAVDCAGRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNV
                     HLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATE
                     IISADCGCMMNIGGKIAKDEPDMPRPKHIASFLLERTGGKA"
     gene            4135..4836
                     /locus_tag="ACFM5C_000601"
     CDS             4135..4836
                     /locus_tag="ACFM5C_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFC6068350.1"
                     /translation="MSARENILAKLKKADALPMEEPAVFDYYREKGVSWDSEAERLKH
                     WAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQIARAALAGSNIE
                     PIVFEREIDTWKTEFFTNINAGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCL
                     FDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILA
                     ILPDHISPADLEENA"
     gene            4833..6287
                     /locus_tag="ACFM5C_000602"
     CDS             4833..6287
                     /locus_tag="ACFM5C_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFC6068351.1"
                     /translation="MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRK
                     AVLTDEEELQSLRDLCEHVRQRSLSKLPALLEQLEENLTKLGVKVHWAETPAEACEII
                     HDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVM
                     PAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAET
                     GTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYF
                     NMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRI
                     GGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLR
                     VEAQRSPTETVPHPIRGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTP
                     RKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA"
     gene            complement(6470..6955)
                     /gene="purE"
                     /locus_tag="ACFM5C_000603"
     CDS             complement(6470..6955)
                     /gene="purE"
                     /locus_tag="ACFM5C_000603"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFC6068352.1"
                     /translation="MIQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEARVVSAHRTPDL
                     MFQYAETARERGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIV
                     QMPKGVPVATFAIGEAGAANAALFAVSMLANETPELAQKLADFRAKQEQAVLSMELEQ
                     I"
     gene            complement(7003..7719)
                     /locus_tag="ACFM5C_000604"
     CDS             complement(7003..7719)
                     /locus_tag="ACFM5C_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HFC6068353.1"
                     /translation="MKTKLPLFIIWLSVSAACSSPVSRNIQDMRPEPQAEAGSSDAIP
                     YPVPTLQDRLDYLEGKIVRLSNEVETLNGKVKALEHAKTHPSGRTYVQKLDDRKLKEH
                     YLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAAALLKGADGGDGGSIAQRSMYL
                     LLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAIFKIGECQYRLQQKDIARATWRSL
                     IQAYPGSPAAKRAASAIRKR"
     gene            complement(7719..8387)
                     /locus_tag="ACFM5C_000605"
     CDS             complement(7719..8387)
                     /locus_tag="ACFM5C_000605"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6068354.1"
                     /translation="MTTHLSNVAPDLQNYLNAIGEPEHPVLTRLREKTEHHRMGKMAI
                     AREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTVLALALPKHGRITACDINVTFTDTAR
                     QVWNEAGVAHKISLHLQPALLTLDDLIAQGEAGSYDLALIDADKPPTPQYFERCLKLV
                     RQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTL
                     LLKK"
     gene            complement(8398..8583)
                     /locus_tag="ACFM5C_000606"
     CDS             complement(8398..8583)
                     /locus_tag="ACFM5C_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HFC6068355.1"
                     /translation="MYHYQSEATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQE
                     NFEAAKVAKKPYTYYQD"
     gene            8726..10702
                     /gene="mutL"
                     /locus_tag="ACFM5C_000607"
     CDS             8726..10702
                     /gene="mutL"
                     /locus_tag="ACFM5C_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HFC6068356.1"
                     /translation="MPRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAID
                     VELAGGGIRLIRVSDNGSGIHPDDIGLALHRHATSKIKTLNDLEHVASMGFRGEGLAS
                     IASVSRLTLTSRQEDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKF
                     LKSENTEYAHCTTMLERLALAHPHIAFSLKRDGKQVFKLPTQSLPERIAAIVGDDFQT
                     ASLEIDSGNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLH
                     NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTE
                     SVSNAGEVLHDITGVTPAPMPSENDSENLFDSASDYPTGNKPDTRNAFGASGKTAPMP
                     YQAARAPQQHSLSLRESRAAMNTYAELYKKTDDIDLELSRLEQARFGNMPSETPAPQT
                     DTPLSDGIPSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQR
                     QENGKLQSQRLLIPVTFATSHEECAALSDHADALAGFGLELSDMGGNTLAVRAVPAML
                     GKADVVSLAKDVLSELAQVGSSQTIEEHENRILATMSCHGSIRAGRRLTLPEMNALLR
                     DMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ"
     gene            10797..12917
                     /gene="dnaX"
                     /locus_tag="ACFM5C_000608"
     CDS             10797..12917
                     /gene="dnaX"
                     /locus_tag="ACFM5C_000608"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFC6068357.1"
                     /translation="MAYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLT
                     GTRGVGKTTIARILAKSLNCENAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGID
                     NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH
                     KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDAL
                     SLLDQAIAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAV
                     GFDNALGELAILLQHLALIQAVPNALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHG
                     KRDLSLAPDEYAGFMMTLLRMLAFAPLAATSCDANAVIENTELQSPSAQTAEKETAAK
                     KPQPRPETETAQTSVQTASAAAMPSESKTAEPVSNQENNDVPPWEDAPDEAQTAAGTA
                     QTSAKSIQTASEAETPPENQVSKNKAADNETNAPLSETPSENPIQATPNNEAVETETF
                     AHEAPAEPFYGYGFPDNDCPVEDNAEIPPPDWEHAAPADAEEENNADEGSNDENNTPS
                     APPPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARATADK
                     KRLDKIRDTLAQAYGLQLTLQTQDWRDEAGRETPAMQDKRVQAEDRQKAQALLEADPA
                     AQKILQAFGAQWQPESLELAANRP"
     misc_feature    11986..12025
                     /gene="dnaX"
                     /locus_tag="ACFM5C_000608"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01843"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="This ribosomal frameshift element is known only in
                     the genus Neisseria; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01843"
     gene            12997..13332
                     /locus_tag="ACFM5C_000609"
     CDS             12997..13332
                     /locus_tag="ACFM5C_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFC6068358.1"
                     /translation="MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKI
                     TMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARGKAEETANKTMGAFTQGL
                     PPGVGDFFR"
     gene            complement(14164..15210)
                     /gene="recA"
                     /locus_tag="ACFM5C_000610"
     CDS             complement(14164..15210)
                     /gene="recA"
                     /locus_tag="ACFM5C_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFC6068359.1"
                     /translation="MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGS
                     LGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPV
                     YARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
                     DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFY
                     SSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELID
                     IGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVANEIDAKIRALNGVEMHIT
                     EGTQDETDGERPEE"
     gene            15464..16228
                     /gene="aroD"
                     /locus_tag="ACFM5C_000611"
     CDS             15464..16228
                     /gene="aroD"
                     /locus_tag="ACFM5C_000611"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HFC6068360.1"
                     /translation="MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLEQIKNMPFD
                     IAEFRADFLECAGSIGEVLRHTQTVRDALPDKPLLFTFRRHGEGGSFPCSDDYYFELL
                     DALIESRLPDIIDIELFSGETAVRRAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLK
                     QMEDCGADICKIAVMPQSAEDVLTLLSATLEAKRLAAKPIVTMSMGQTGTVSRLAGQV
                     FGSSITFGSGTQNSAPGQIGVSALRAALDCLESGAD"
     gene            16248..18263
                     /gene="rep"
                     /locus_tag="ACFM5C_000612"
     CDS             16248..18263
                     /gene="rep"
                     /locus_tag="ACFM5C_000612"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HFC6068361.1"
                     /translation="MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNV
                     GYLPHTVAAITFTNKAAAEMQERVAEMLPKSQTRGLTICTFHSLGMKILREEANHIGY
                     KKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQ
                     QTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTN
                     TCQFALMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVVKLEQNYR
                     STARILKIANKVIENNPKLFTKKLWSQLGEGEPVKVVACQNEQHEADWVVSQIIKQKL
                     IGGDKTQYADFAVLYRGKHQARIFEEALRGVRIPYRLSGGQSFFDKAEIKDVLSYVRL
                     LANPNDDPAFLRAVTTPKRGIGDVTLGKLNAYAHEHECSLYEAAQTEEALATLNNTNR
                     QHLQAFMDMFGSYRAKAETGEAGEFINSLLEEIDYENHLLASEEGKAGEIKWRNVGDL
                     VSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLV
                     GCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSRF
                     IDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDSMKKGGPED"
BASE COUNT         4513 a         5092 c         4942 g         3755 t
ORIGIN      
        1 cgtactggtt tttgttaatc cgctacattt ctataataaa ccttctatgg gcagcaggga
       61 taggattttt gcggcgatgc gtttccaaag tttggcttcg ggttcgttcg ggtaggtttt
      121 tcgggtggcg ggatcgtgcc attgcaggcg gttgtgcctg tcgagggtaa cgcggtaggc
      181 gtatttgggt gtggtatcgg caagggtgcg ctccatctgt tctgcgattt tggggctttc
      241 gataacaacg cccatttcag tattgagccg tgcggaacgg gggtcgaggt tgaatgagcc
      301 gatgaagatg cgtttgccgt ccacaatgaa ggttttggca tgcaggctgg ttacggagct
      361 gccggtcagg cctttgtctt ttgtggcagg gacggcatgg ttgggttgca gctcgtagag
      421 tttgatgccg gctttgagca gcggttttcg gtatttgaca tagccggaat ggacggcggc
      481 aacgtcggtc gcctgtagcg agttggtcag gacggtaacg tctatgccgt cctgcaccag
      541 ttttgccagt gcgtctgtgc cggattttgt ggggacgaaa tagggtgaaa ccagatagac
      601 gcttttttcg ggctgtttga gcgcgtcttg cagccgcccg gcaatcggcg gtttgcggcg
      661 gtcgcggtcg agtccttttg cagggtcgtc gctgatgagg cgggtttgga cgctctgcca
      721 gtcgatgcgt cctgtctgta ttttttggta gaggggcgac tgttcgacgg tttcgcggta
      781 gcgcaggagc gcgtgtctgg acgtttcgtc gttgtatccg agtgcttgaa gacccttgcc
      841 gatgttgccg ctgcggatga tgcgcgtggc gttgtgggcg gaatggcttg cccagtagcg
      901 atcgaagtcg tgcgatactt cgccgacgac gctgccggta gcgaggatat ccaggtcggc
      961 gaaaacggtg tcctcaccga ctttgaagta ttcgtcgccg atattgcgtc cgccgagtat
     1021 ggtggcgcgg ttgtcggcgg taaaggattt gttgtgcatg cggcggttga ggcgggggaa
     1081 atcagtcagg tagccgagtg cgcgccattt gcggaagacg aaggggttga acaggcgcac
     1141 ttcgatattg ggatggctgt cgagggcgag caggaggtcg tccaatccgc gcgtgttgtt
     1201 gtcgtccaac agcaggcgta cgcgcacacc gcgttctgcg gcaaggtaca cgaggttgaa
     1261 cagcagtcgg ccggaaatgt cgttgcgcca gatgtagtat tgcaaatcga ggctgtgttc
     1321 ggcagattcg ataagggcgg cgcgggcggc aaaggcttcg tgggggtcgt tcagcagata
     1381 gatatcggat agcccgttgg tatgaggggt gtgccggatt tgcaggatgt tgtccaggcg
     1441 gacgggtttg gaagtattga aatgacggct ttccgtccgt tcttccagtg ggggcaacca
     1501 tgaagaacat gaacagagaa ggaggcataa aagggaaatt aggctgcgtg ttttcatcag
     1561 ggatatggtt tcagacggca ttgcctgtgt tttggggttg gcgcgcatgg aagtgcggca
     1621 tcataatcca aacgttgaaa cgggtaaaag ttttgcgtgc ggaccgcttt aggacggtgt
     1681 gttccgtgtc aggtttgcgc cgtctgaaac gtgcagacgc ttgaaaacca acgacgaggc
     1741 aagggtgatg ccgccgatgc tgagcagggt catacggaag gcggaatgca gacctgaaga
     1801 agccggtatc agaaatgtcc agtttttaag gattaatgcg ccgacaacaa tgcccatgct
     1861 gatggcaagc tgttggttga ccgccatcag gctgttgccg ctgccggtct gttgcgggcg
     1921 caaaccggcg agggtcagtg tattcatggc agaaaactgc agggagttgc acgcgccgat
     1981 cgccagcgag aggaaaatcc aaatccacag cgacgagttt ccgtcaggca gggcgagcag
     2041 catgatgaag gcggcaagca gcttggtgtt ccaaagcagt accgtgcggt agccgaaacg
     2101 tttcatgagc ggtgcaatca gcggtttgac cagcagcgaa gacagggcga cgggggcgac
     2161 cagccaaccc gacaggcttg cgccgaagcc gaaagcgact tgaaacatca ggggcatcag
     2221 aaaaggaatc gagctgatgc cgagacggct gaacagattg cccgccagtc ccagacggaa
     2281 agtgcgtatc agaaacaggt cggcggaata aatcggtttg gacgcggttt tcatatgtcg
     2341 gaaataacgg cgtgcaaaca gcagtccgcc gcacagcggc aacagtgcaa aatacggagg
     2401 cagcgcgtgc gacaggcttt ctgccgaaag taacaagagg cacgcggcgg cagaaaaaat
     2461 cagataacct ttgaagtcta aagagatatt gctgccttta atatcgggca tgatgttgcg
     2521 tcccaatatg aaacccaaaa gaccgatggg caggttgagc aggaaaatcc agtgccacga
     2581 agcgtattcg accagataac cgcccgccaa aggccctaaa accggtccga ttaatgcggg
     2641 cataaccgca taattgatgg cgttgagcag cttggacttg tcgtacacac gcaagatggt
     2701 cagacgcggt atcggaacca gcatcgaacc gccgatgccc tgaacgacac gggaaagcgt
     2761 caattcaaac agcgaacccg atgcggcgca caatgccgat ccgagcataa aaacggcaat
     2821 cgaaccgaaa aagacttttt tcgttccgaa cctgtccgcc aaataaccgc tcaaaggaat
     2881 cagcagggca accgtcagcg tataggcaac gactgccagt tgcatatcca gaggcgactc
     2941 attcatgtcg gcggcaattt caggcagtgc ggtatttaaa atggtcgcat ccaacatctg
     3001 cataaaaatg gcaattgcca gcagaagcgg cagccaaggg gatggtgcgc gggcggatag
     3061 ggtgtttttt tccatagggc gattgtaccc catccttgtg ccgttattgt tttcagatgc
     3121 tgtctgaatg ccgtcagagt cggcgtcctg aatgttcaca agcaaacgaa tcagcatttt
     3181 attgtaatga taattattat cgaaaattat cagagtaagg tacagtaagc gttatggggt
     3241 agtttgtaag aaaaaccgga ttatttttta aaattagact tgacccgcaa cagtcaatta
     3301 cttaaagtaa acgcttacct ttctacagag aaaaacgggt ttcccgttat caaaaaacat
     3361 gagcgcaacc attcccccaa aaatcatccg atacgacagc aatccgaccg atgtctattt
     3421 tttcggcact tgcgtccttg atctttttat gcccgaagca ggcatggatg ccattgccct
     3481 aatcgagcag cagggcatac gcgtccattt cccgatggcg caaagctgct gcggccagcc
     3541 tgcctattca tccggccatc cgaccgaagc ctttgatgtc gccagagcgc aactcgacct
     3601 tttccccgag gagtggccga ttgtcgtacc gtccggttcg tgcggcggta tgatgaaaca
     3661 ccattggccg acgctgttta aaggcagcga gtacgaggaa agggctgtgg attgcgccgg
     3721 ccgcatcatc gagtttaccc atttcctgct tgccatcggt ttcaaacccg aagacaaggg
     3781 cgaaccgctc aaagtcgccg ttcacacttc ctgcgccgcc cgccgcgaaa tgaatgtcca
     3841 tctttcaggc tggcaactga ttgacggtat ggaaaacgtc gaacgcatcg tccacgacca
     3901 cgaaagcgaa tgttgcggct tcggcggcac attctccgtc aaacaagccg atatttccgg
     3961 cgcgatggta accgacaaag tcgccgcgct gaaagaaacc ggcgcaaccg aaatcatcag
     4021 cgcggactgc ggctgtatga tgaacatcgg cggcaaaatc gccaaggacg agccggatat
     4081 gccgcgtccg aaacatatcg catccttctt gttggaacgc accggaggca aagcatgagc
     4141 gcgcgtgaaa atattttggc aaaactgaaa aaagccgatg ccttgccgat ggaagagcct
     4201 gcggttttcg attattaccg cgaaaagggc gtttcttggg acagcgaagc cgagcgtctg
     4261 aaacattggg ctgccgcaat gcgcgcggtc aaaaccgaaa tttattgggt gacgaaaagc
     4321 aattggatgc aggttttccg cgaagcggca gaaggcaagg gtttgaaaaa catcctgctg
     4381 cccttggcga ccgaacacgg acaaattgcc cgtgccgcat tggcgggcag caatatcgaa
     4441 ccgattgtct tcgagcgcga aatcgatact tggaaaaccg agtttttcac gaacatcaat
     4501 gcgggcttca gcggcgcgca atgcggcatc gcccgcaccg gcacgctgat gctgttttcc
     4561 agccccgaag aaccgcgtac tttgagtctc gttccgcccg tgcatttctg cctgttcgat
     4621 acgtccaaga tgtacaacga gtttcacaat gccgtcgaag gcgaaaaact ggtggaaaac
     4681 ggtatgccga ccaatgtatt cctgatttcc ggcccgtcca aaaccgcaga catccaactg
     4741 acgcttgctt acggcgcgca cggcccgcgc gatttggtca tcctcgccat cctgcccgac
     4801 cacatttccc ctgccgattt ggaggaaaac gcatgactac gcaaaccatc aaatttcaca
     4861 tgaagccgga aactttcaag caaaacgccg caatttccct tcaagacaag cctttgcgta
     4921 aaagcctgcg taccgcgatg gatatgctga tgaccaaacg caaagccgtt ttgaccgacg
     4981 aagaagagct gcaaagcttg cgcgatttgt gcgaacacgt ccgtcagcgc tcattgtcta
     5041 aattgcctgc cctgctggag cagctggaag aaaacctgac taagttgggc gtaaaagtac
     5101 actgggcgga aacaccggcc gaagcctgcg aaatcatcca cgacatcatc acagccaaaa
     5161 acggcaagct gatggtcaaa ggcaaatcga tggtcagcga ggaaatcgag ctgaaccatt
     5221 atcttgaagc aaaaggcatt aaagcggtag aaagcgactt gggcgagttc atcgtccaaa
     5281 tggcaggcga aaaaccgacc catattgtga tgcccgcaat ccataaaacc aaagaacagg
     5341 ttagcgaact gttccaccaa aacctcggta cgccgctgac agacgatgta gaccaactga
     5401 ccggcttcgc ccgtaaagca ctgcgcgata tttacagcac tgccgatgtc ggtttgagtg
     5461 gcgtaaactt tgccgttgct gaaacaggta cgctgtgtct ggtggaaaac gagggcaacg
     5521 gtcgcttgag taccaccgta ccgcccgtgc atatcgctat taccggcatt gaaaaagtgg
     5581 tggcgaaatt gtccgacatc ccacccttgt acagtctgct gccgcgctcc gccatcggtc
     5641 aaaacatcac aacctatttc aatatgatta ccggcccgcg ccgcagtgaa gaattagacg
     5701 gtccgcaaga aatgcacttg gttctgctcg acaacggccg cagccaggct tatgccgaag
     5761 accaaatgcg ccgcaccctg caatgtatcc gttgcggcgc gtgtatgaac cattgcccgg
     5821 tttatacccg tatcggcggc gcggcatacg gcacaaccta tcccggtccg attggcgaga
     5881 ttatttcccc gcacctgtta ggcttggatg ccactcgcga cctgccgacc gcctgcacga
     5941 tgtgcggcgc gtgcgtggaa gtttgtccgg tacgcatccc gattaccgaa caaatgcagc
     6001 gtttgcgcgt tgaagcgcaa cgttcgccga ccgaaaccgt gccgcacccc atccgggggc
     6061 aaggcgcatc gcataccttc ggcgaacaaa tggcgtggcg cacattcaac ggtattttca
     6121 gcggcagcaa aacctaccgc gccttcggtt gggcagccac caagttccgc aacctgaccc
     6181 cgcgcaaaca gttgggttgg acgcaaaacc gcgtgccgat gaaaccggcg aagaaaaccc
     6241 tgcacgaact gatggcagaa aaaatgcgcc aaaaagaaca ggcataaaaa gttgttcgca
     6301 aaaatgccgt ctgaaacccg aaacagggct tcagacggca tttgtatagt ggattaacaa
     6361 aaatcaggac aaggcgacga agccgcagac agtacaaata gtacggcaag gcgaggtaac
     6421 gccgtactgg tttaaattta agccactata tattcgcgga cggcgggttt taaatctgtt
     6481 ccaattccat actcaaaaca gcctgttcct gtttggctcg gaagtctgcc agtttttgcg
     6541 ccagttcggg ggtttcgttg gcgagcatgg aaacggcgaa caatgcggca tttgccgcgc
     6601 ctgcctcgcc gatggcgaat gtggcgacgg gtacgccttt gggcatttgt acaatcgata
     6661 aaagcgaatc ttcgccgcgc aggtatttgc tggggacggg tacgcccaaa acggggacgg
     6721 tggtcttggc ggcaaccatg ccgggcaggt gcgccgcgcc gcccgcgccc gcgataatgg
     6781 ctttgatgcc gcgctcccgt gcggtttcag cgtattggaa cattaaatcc ggggtgcggt
     6841 gtgcggaaac gacgcgcgcc tcatattcta cgccgaactc ttcaagaaac tgcgctgcct
     6901 gccgcataac gggccaatcg ctgttgctgc ccatgatgat gccgatttga atcataaatc
     6961 ctccttggtg cggatggggt aaaaagcgga aaaatggaaa aactatcgtt tgcgtatggc
     7021 tgaggcggcg cgttttgccg ccgggctgcc cgggtaagcc tgtatcagac tgcgccaagt
     7081 cgcccttgca atgtctttct gctgcaacct gtattggcat tcgccgattt tgaatatggc
     7141 ttcgggcgcg gttgggctgt ctttgaaacg gttggcgtaa cgccctccga tttcgatgac
     7201 ggattcgcag ttccccatac gcgccctgct ttgcagcaac aggtacatac tgcgttgcgc
     7261 gatgctgccg ccgtcgcctc cgtccgcgcc tttcaacagg gcggcagcgg cagaaaacct
     7321 gccgctttta tagtgtttga gcgcctgatt gtagaggttt tgtgcggttt caacggtatg
     7381 tgcggatgcg ctgccgcctt cggtattgag gtaatgctct ttcaacttgc ggtcatcgag
     7441 tttttggacg tatgtcctgc cggaagggtg tgtttttgcg tgttccagtg ctttgacttt
     7501 gccgtttaag gtttccactt cgttcgacag ccggacgatt ttgccttcca gatagtccaa
     7561 acggtcttgc agagtgggaa cgggataggg aatagcgtcc gaactacctg cctctgcctg
     7621 cggttcgggc cgcatatcct gaatattgcg ggaaacaggg gaagaacagg cggcggacac
     7681 agacagccaa atgataaaaa gcggtaattt ggtcttcatt attttttcag aagcagggtc
     7741 aaaccgtcgc cgacgggcag ggtgatgggg acgatgcgcg ggtcgttcgg caggttttga
     7801 ttaaaatctt tgaggatgcc gacgctgggc ggcgcatcgg aagccgcttc gcgcatcacc
     7861 cttccgttca acaaaatatt gtcgatggca atgatgccgc cttgccggac aagcttgagg
     7921 caacgctcga aatattgcgg cgtgggcggt ttgtctgcgt ctatcagtgc caaatcgtag
     7981 cttccggctt caccctgtgc aatcaaatca tccaatgtca gcaatgcggg ttgcagatgc
     8041 aggctgattt tatgtgccac gcctgcctcg ttccaaacct gacgcgccgt atcggtaaag
     8101 gttacattga tgtcgcaggc ggtaatccgc ccgtgttttg gcaacgccaa tgcaagcacg
     8161 gtgctgctgt atccggtaaa tacgccgact tccagatatt tttccgcgcg aatcagcttt
     8221 gccagccaaa ccaaaaccgc cgcctgttcg cgcgcaatcg ccattttgcc catacggtga
     8281 tgctcggtct tctcacgcag ccgcgtcaaa acgggatgtt cgggttcgcc gatggcgttc
     8341 aaatagtttt gcaggtccgg tgcgacattg gacagatggg tcgtcatttc ggtgggttca
     8401 gtcttggtaa taggtataag gttttttcgc tacttttgcc gcctcgaagt tttcctgttc
     8461 ttcgggattg agttcgacat cccacaaaag cccccggttt tccaaacgct gctgttccaa
     8521 ctcaggtttt tcttcaatca gacggttgag gaattgtgtg gcttcggatt ggtagtgata
     8581 catctttgcg ctccaatttt acgggatacg gcgtgattat actggtattt tccaaacggg
     8641 ataaacggct tttatcaaga atacaggcag aaaagtaagg ggttttatta tagaataaag
     8701 cgtttttgca acggaagcct accttatgcc acgcattgcc gccctgcccg accatcttgt
     8761 caaccaaatc gccgccggcg aagtggtcga acgccccgcc aacgccttaa aagaaatcgt
     8821 tgaaaacagc atagacgcag gcgcgacggc gattgatgtc gaactggcgg gcggcggcat
     8881 ccgtctcatc cgcgtcagcg acaacggcag cggtatccat ccagacgaca tcgggcttgc
     8941 gctccaccgc cacgccacca gcaaaatcaa aactctaaac gatttggaac acgttgccag
     9001 catgggcttt cgcggcgaag gtttggccag tatcgcctca gtcagccgcc taaccctgac
     9061 cagccgtcaa gaagacagtt cgcacgcgac ccaagtcaaa gcagaagacg gaaaactcag
     9121 cagccctacg gcagccgccc accccgtcgg caccaccatc gaagccgccg aactcttctt
     9181 caatacccct gcgcggcgca agttcctcaa atccgaaaac accgaatacg cccactgcac
     9241 caccatgctc gaacgccttg cactggcgca tcctcacatt gccttctcac tcaaacgcga
     9301 cggcaaacaa gtattcaaac tcccaaccca aagcttgcct gaacggattg ccgccattgt
     9361 cggcgatgat tttcagacgg cttcattgga aattgacagc ggcaatggcg cattgcggct
     9421 ctatggcgca attgccaagc cgacttttgc caaaggcaaa actgacaaac aatactgctt
     9481 cgtcaaccat cgttttgtcc gcgacaaagt gatgctccac gccgtcaaac aggcataccg
     9541 cgacgtattg cacaacgccc ttacccctgc tttcgtcctc tttctcgacc tgccgcccga
     9601 agccgtggat gtcaacgtcc acccgaccaa aaccgaaatc cgcttccgcg acagccggca
     9661 ggtgcaccaa ctcgtgttcc acacgctcaa caaagccctt gccgacacac gcgccgactt
     9721 gaccgaaagc gtcagcaacg caggcgaagt gttgcatgac attaccggcg ttacgcctgc
     9781 cccaatgccg tctgaaaacg acagcgaaaa tctgtttgat agcgcatccg actacccgac
     9841 aggcaacaaa cccgatacac gcaatgcctt tggtgcatca ggcaaaaccg cgcccatgcc
     9901 ttaccaagcc gcgcgtgcgc cgcaacaaca cagcctgtcc ctgcgcgaaa gccgcgcggc
     9961 catgaatact tacgccgagc tttacaaaaa aactgacgac atcgaccttg agttgagccg
    10021 attagagcag gcacgtttcg gcaatatgcc gtctgaaacg cctgctcccc aaacagatac
    10081 gccgctttca gacggcatcc catcccaatc cgaactaccg ccgctcggtt ttgccattgc
    10141 ccaattacta ggcatctaca ttcttgccca agccgaagac agcctgttgc tcatcgatat
    10201 gcacgccgcc gccgaacgcg tcaactacga aaaaatgaaa cgccaacgtc aggaaaacgg
    10261 caaactacaa agccaacgcc tgcttattcc cgtaaccttc gccacgtccc acgaagaatg
    10321 cgccgccctc tccgaccatg ccgatgcact ggcaggcttc ggcttggaat tgtccgacat
    10381 gggcggcaat acccttgccg tccgcgcagt tcccgccatg ctaggtaaag ccgacgtcgt
    10441 ttcactggcc aaagatgtat tgagcgaact tgcccaagtc ggcagcagcc aaaccatcga
    10501 agaacacgaa aaccgcatcc tcgccactat gtcctgccac ggctcgatcc gcgccggccg
    10561 ccggctcacc ctgcccgaaa tgaacgccct tctgcgcgat atggaaaata cgccgcgcag
    10621 caaccagtgc aaccacggca ggccgacttg ggtcaaactg actttgaaag aattggacgc
    10681 actgttcttg cgcggacagt aagccgaaag tgctagaata cgccgcccga gaccgccgtt
    10741 cagacggcat tccgacacac cgacagaaac atcacgaccg aaaccaagag aaaaacatgg
    10801 cctatcaagt tctcgcccga aaatggcggc ccaaaacctt ttccgaccta gtcggtcagg
    10861 aacacgtcgt caaagccctg caaaatgcct tggacgaagg caggctgcac cacgcctacc
    10921 tgctgaccgg tacgcgcggc gtgggcaaaa ccaccatcgc ccgcatcctt gccaaaagcc
    10981 tcaactgcga aaacgcgcaa cacggcgaac cttgcggcgt atgcgaaagc tgtacgcaga
    11041 tcgatgccgg acgctatgtc gacctgctcg aaatcgacgc cgcttccaac acaggcatcg
    11101 acaacatccg cgaagtcttg gaaaacgccc aatacgcgcc gaccgccggc aaatacaaag
    11161 tctatatcat cgacgaagtg catatgcttt ccaaaagcgc gttcaacgct atgctcaaaa
    11221 cgctggaaga gccgcccgaa cacgtcaaat tcatccttgc cacgaccgat ccgcacaaag
    11281 tccccgttac cgtattaagc cgctgcctgc aattcgtctt acgcaatatg accgcgcagc
    11341 aggttgccga ccaccttgcc cacgtcctcg acagcgaaaa aatcgcctac gccccccccg
    11401 ccctgcaact tttgggacgc gccgccgccg gatcgatgcg cgatgccttg agcctgctcg
    11461 accaagccat cgccatgggt tcgggcagcg ttgccgaaca agacgtccgc caaatgatcg
    11521 gtgcggtcga taaacaatac ctgtacgaac tgctgacagg catcgtcaac caagacggcg
    11581 aagccctgct ggcaaaagca caggaaatgg ctgcgtgtgc cgtcggcttt gacaacgcct
    11641 tgggcgaact tgccatactg ctgcaacacc tcgccctgat acaggcagtg ccgaatgcct
    11701 tggcgcacga cgaccccgat tccgatattt tgcaccgcct cgcccaaacc ataagcggcg
    11761 aacaaatcca gctttactac caaatcgccg tccacggcaa acgcgacctg agcctcgccc
    11821 ccgacgaata cgccggcttt atgatgaccc tgctgcgtat gctggcgttc gcacccttgg
    11881 cggcaacatc gtgtgatgca aacgccgtga ttgaaaatac cgaacttcaa tccccatcgg
    11941 cacaaaccgc cgaaaaggaa accgccgcaa aaaagcccca accgcgccct gaaacggaaa
    12001 ccgcccaaac atccgttcag acggcatccg cagcggcaat gccgtctgaa agcaaaactg
    12061 ccgaacccgt ttccaatcaa gaaaacaacg atgttccgcc ttgggaagac gcgccggacg
    12121 aagcccaaac cgcagccggc acggcgcaaa cgtcggcaaa aagcattcag acggcatccg
    12181 aagccgaaac gccgcccgaa aaccaagttt ccaagaacaa ggcagccgac aacgaaacca
    12241 atgccccctt gtccgaaacg ccgtctgaaa accccattca ggcaacaccg aataatgaag
    12301 ccgttgaaac ggaaacattt gcacacgaag cccctgcaga acctttctac ggttacggct
    12361 ttccggataa tgactgcccc gtagaagaca acgcagaaat cccgccgccc gattgggaac
    12421 acgccgcccc tgccgatgcg gaagaagaaa acaacgccga cgaaggcagc aacgacgaaa
    12481 acaacacgcc gtccgccccg ccgcccgaat tttccaccga aaactgggca gccatcgtcc
    12541 ggcatttcgc ccgcaaactc ggcgcggcgc aaatgccggc gcaacactcc gcgtggacgg
    12601 aataccatcc cgacaccggc ctgatggttt tggcgatgac cgccgaagcc cgcgccaccg
    12661 ccgacaaaaa acgcctcgac aaaatccgcg acacccttgc ccaagcctac gggctgcaac
    12721 tcaccctgca aacccaagac tggcgcgacg aagccggcag ggaaaccccc gcgatgcagg
    12781 acaagcgcgt ccaagccgaa gacaggcaaa aagcacaagc attgctcgaa gccgaccccg
    12841 ccgcacaaaa aatcctccaa gcattcggcg cgcaatggca gcccgaatca ctggaattgg
    12901 cagcaaaccg gccgtaaaca gatataatgc cgcccgaacc cttcggacgg cattgccgtt
    12961 tccctcattc aatcaaaaca gacaggagta ttcagtatgt tcggaaaagc cggattaggc
    13021 ggcctgatga aacaggcgca gcaaatgcag gaaaatatga aaaaagcgca agccaaactt
    13081 gccgaaaccg aaatcgaagg cgaagcaggc aacggcctgg tcaaaatcac aatgacctgc
    13141 gcgcacgaag tacgcaaaat cgacatcagc cccgatttga ttcaagaagc cgccgacgac
    13201 aaagaaatgc tcgaagacct catcctcgcc gccctcaaat ccgcccgggg caaagccgaa
    13261 gaaaccgcaa acaaaacaat gggcgcattc acgcaaggtc taccccccgg agtgggcgac
    13321 ttcttccgct gatccccgac cgtcattccc acgcaggcgg gaatctagaa cgtagaatct
    13381 gagaaaccgt tttactcgat aaatttccgt gccgaggggt ctggattccc gccttcgcgg
    13441 gaatgacggc atcagtttgc aagattcggc gtgaacggta aaaacagtga gaatgataag
    13501 aacgcaaaaa cggcaagaat agcgggaatc ggcaggctga agcccaccct accattattt
    13561 acacatccgt accgcttaaa tgccgtctga aacttcgtca ttcccgtgaa aacgggaatc
    13621 caaccccgtg ggagcagaaa cttacacccc gtcattcccg cgaacgcggg aatccagtaa
    13681 ccgaaaaacc acaggaatct atcggaaaaa cagaaaccct cgaccgtcat tcccgcgaac
    13741 gcgggaatcc agtaaccgaa aaaccacggg aatctatcgg aaaaaacaga aaccctcgac
    13801 cgtcattccc gcgaacgcgg gaatctagaa cgtagaatct gagaaaccgt tttactcgat
    13861 aaatttccgt gccgacaggt ttggattccc gccttcgcgg gaatgacggc atattttttg
    13921 catttgatat aaaggggcgt ttgaattttg ttcagcaagt gcaaagtgtt gcacataaaa
    13981 aggcgcaggc ttcatccgta aagtcggcgc aggatagagg caaagcgggc gtaggtcggg
    14041 ctgtagcaac tgtatttttc accccgtcgg gcaaaaatac caaaactcaa atcaagccgt
    14101 tcggaggcgg ctcaaaaaaa cggtacttcg cagcagaagt accgtttatc gggatttcag
    14161 gttttattct tcggggcgtt cgccgtcggt ttcgtcctgc gtcccttcgg tgatgtgcat
    14221 ttctacgccg ttgagggcgc ggatttttgc gtcgatttca ttggcgactt cgggattttc
    14281 cttcagccag acgcggacgt tgtctttgcc ctgaccgatt ttcgcgccgt tgtagctgta
    14341 ccacgcgccg gatttgttga tgatgtcgtt tttcacgccg atgtcgatca attcgccttc
    14401 ccaactgatg ccttctccgt agaggatgtc aaactctgcc tgacggaacg ggggggcgac
    14461 tttgtttttg atgactttga cgcgggtttc gttgcccaat acctcttcgc cttttttgat
    14521 ggatccggtg cggcggatgt cgaggcggac ggaagaatag aatttcagcg cgttgccgcc
    14581 ggtggtggtt tcggggctgc cgaacattac gccgatcttc atccggattt ggttgatgaa
    14641 cacaaccagc gtgttggttt ttttgatgtg tccggtcagt ttgcgcaaag cctggctcat
    14701 caggcgcgcc tgcagtccga catggctgtc ccccatatcg ccttcgattt cggctttggg
    14761 gacgagtgcg gctacggaat cgacgactac catatctatg ccgcccgaac ggacgagtgt
    14821 gtcgcagatt tccaaagcct gttcgccggt atcgggctgg gacaggtaaa gctcttcgac
    14881 ttttacgccg agtttgcggg cgtaaacggg atcaaaggcg tgttcggcat cgacaaaggc
    14941 gcacacgccg ccgtttttct ggcattgggc gacggcttcg aggcagaggg tggttttgcc
    15001 ggaggattcg gggccgaaga tttcgacgat gcgcccgcgc ggcagaccgc cgactccgag
    15061 ggcgaggtct aatccgagcg atccggtgga aatgacttcg aggttttctt cctgctggct
    15121 gccgtccatt ttcatgatgg cgcctttgcc gaaacttttt tcgatttgcg ccagtgcggc
    15181 ggcaagggct ttgcttttgt cgtctgacat tggggttact ccggaacaaa tgcggtatgt
    15241 gggatgcggc gcaacacggg ctgcggcgcg ggatgtgtat cgttttcccg atgtgcgggc
    15301 tatcggtaat gctgcttcac ggggttgcca ttatcgcata tttccttgct tgccgatatg
    15361 cggcaggacg cggcggcttg tgccggaatg gaatctggat gccgtctaaa aggcggccgg
    15421 ctttgttata atggcggctg ttttttctgt gtgtgcctgt tttatgtgtt cctgccttgt
    15481 tgtcaaaaat accgttatcg gaagcggacg caccaaaatc gccgtgccgc ttgtcgcccg
    15541 cgatgctgcc gaactttccg ccgtacttga gcaaatcaaa aatatgccct tcgatattgc
    15601 ggagttccgc gccgactttt tggaatgcgc gggcagcatc ggcgaagtat tgcgccacac
    15661 gcagaccgtc cgcgacgcgc tgcccgacaa accgctgctg tttacgttca gacggcatgg
    15721 cgaaggcggc tcgttcccgt gttcggacga ttattatttt gaactgctcg acgcgctgat
    15781 cgaaagccgc ctgcccgaca tcatcgacat cgagctgttt tccggcgaaa ccgccgtccg
    15841 gcgcgccgtg gcaaatgctc aaaaaaacgg catcgccgcc ctactctgca atcatgagtt
    15901 tcaccgcacg ccgccgcaag aagaaatcgt atgccgtctg aaacagatgg aggactgcgg
    15961 cgcggacatc tgcaaaattg cggtgatgcc gcaaagcgcg gaagatgtgc tgactttgct
    16021 ttccgccacg ctcgaagcga aacggcttgc cgccaaaccg attgttacaa tgtcgatggg
    16081 acagacgggg acggtcagcc ggcttgccgg acaggtgttc ggctcaagca tcacgttcgg
    16141 ttcgggaacg caaaactccg cgccggggca aatcggcgta tccgccctcc gtgcggcact
    16201 cgactgtctc gaaagcggcg cagactgatt tcagacggca tcaaaacatg atgaaactca
    16261 atccccaaca gctcgaagcc gtccgttacc tcggcggccc cctgctcgtc cttgccggtg
    16321 caggcagcgg caaaaccggc gtaattactc aaaaaattaa gcatttgatt gtcaatgtcg
    16381 gctatctgcc gcataccgtc gccgcaatta cctttaccaa caaagccgct gcggaaatgc
    16441 aggagcgcgt cgccgaaatg ctgcccaagt cgcaaacgcg cgggctgaca atttgcacgt
    16501 tccattcttt gggcatgaag attttgcgcg aagaggcgaa ccatatcggt tacaaaaaaa
    16561 acttttccat cctcgattcc accgacagcg cgaaaatcat cggcgaactt ttgggcggta
    16621 cgggcaaaga agccgtattc aaggcgcagc accagatttc cttgtggaaa aacgatttaa
    16681 aaacgcctga agatgtcgtt cagacggcct ctaatgcgtg ggaacaacaa accgcacgcg
    16741 tgtatgcgag ctatcaggaa accttacaaa gctatcaggc agtggacttc gatgacttaa
    16801 tccgcctgcc tgccgtgctg ttgcagcaaa acagcgaagt gcgcaacaaa tggcagcggc
    16861 ggctgcgtta tctgctggtt gacgaatgcc aagatacgaa tacctgccaa tttgcgctga
    16921 tgaaactctt gaccggtgcg gaaggtatgt ttaccgccgt cggcgacgac gaccagtcca
    16981 tctacgcgtg gcgcggtgcg aatatggaaa acctgcgcaa aatgcaggaa aactatccgc
    17041 agatgaaggt cgtcaaactg gagcaaaact accgctccac cgcgcggatt cttaaaatcg
    17101 ccaacaaagt catcgaaaac aaccccaagc tgtttaccaa aaaactttgg tcgcaattgg
    17161 gcgaaggcga gccggtcaaa gtcgttgcct gccaaaacga gcaacacgaa gccgactggg
    17221 tcgtcagcca aatcatcaaa caaaaactca tcggcggcga caaaacccaa tacgccgatt
    17281 tcgccgtgtt ataccgcgga aagcatcagg cgaggatttt cgaggaagca ttgcgcggcg
    17341 tgcgcatccc ctaccggctc tccggcggac aaagcttttt cgacaaagcc gaaatcaaag
    17401 acgtgttgtc ttatgtgcgg ctgcttgcca accccaacga cgatcccgcc tttctgcgcg
    17461 ccgtaaccac gcccaaacgc ggcatcggcg atgtaacgct gggcaagctc aacgcctacg
    17521 cgcacgaaca cgaatgcagc ctgtatgaag ccgcgcaaac cgaagaagcc cttgccacgc
    17581 tgaacaatac caaccgccaa cacctgcaag cctttatgga tatgttcggc agctaccgcg
    17641 ccaaagccga aacaggcgaa gcaggcgagt tcatcaacag cctgctcgaa gaaatcgact
    17701 atgaaaacca cctgcttgcc agtgaagaag gcaaagctgg cgaaatcaaa tggcgcaacg
    17761 tcggcgattt ggtatcatgg tttgcgcgaa aaggcgggga agacggcaaa aacatcatcg
    17821 aactcgccca aaccgtcgcc ttgatgacgc ttttggaagg aaaagacgaa gaagaaaccg
    17881 atgccgtctc gctatccacg ctacacgccg ccaaaggttt ggagtatccc tatgttttcc
    17941 ttgtcggttg cgaagaaggt gttttgccgc acaacgacag catcgaagaa ggcaacgtcg
    18001 aagaagaacg ccgcctgatg tacgtcggca tcacccgcgc caaacgccag cttacgctga
    18061 cccactgcgt caaacgcaaa aaacaaggca tatggcagtt ccccgaaccc agccgattca
    18121 tagacgaaat gccgcaggaa gatttgaaaa tcctggggcg caaaggcggc gaaccgattg
    18181 tcagcaaaga agaaggcaga cgcaaccttg ccgatataat cggaaggctc gacagcatga
    18241 aaaaaggcgg tccggaggat taaaccaaga tagggaaacg aagccggaga caatgtatag
    18301 tg
//
LOCUS       DAXHNP010000024        17022 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.024, whole genome shotgun sequence.
ACCESSION   DAXHNP010000024 DAXHNP010000000
VERSION     DAXHNP010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17022
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.024"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(50..1219)
                     /gene="metK"
                     /locus_tag="ACFM5C_000613"
     CDS             complement(50..1219)
                     /gene="metK"
                     /locus_tag="ACFM5C_000613"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFC6068362.1"
                     /translation="MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAET
                     LVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPD
                     IAQGVNEGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRL
                     PWLRPDAKAQLTVVYDSETGKVKRIDTVVLSTQHDPSIAYEELKNAVIEQIIKPVLPS
                     ELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVD
                     RSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLV
                     REHFDLRPKGIVQMLDLLRPIYSKSAAYGHFGREEPEFTWERTDKAAALRAAAGL"
     regulatory      complement(1402..1512)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01725"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="SAM-I-IV-variant riboswitch; SAM riboswitches
                     modulate the expression of downstream genes in response to
                     levels of S-adenosylmethionine; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF01725"
     gene            1565..2461
                     /locus_tag="ACFM5C_000614"
     CDS             1565..2461
                     /locus_tag="ACFM5C_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6068363.1"
                     /translation="MFRLQFGLFPPLRTAMHILLTALLKCLSLLPLSCLHTLGNRLGH
                     LAFYLLKEDRARIVANMRQAGMNPDPKTVKAVFAETAKGGLELAPAFFRKPEDIETMF
                     KAVHGWEHVQQALDKHEGLLFITPHIGSYDLGGRYISQQLPFPLTAMYKPPKIKAIDK
                     IMQAGRVRGKGKTAPTSIQGVKQIIKALRSGEATIVLPDHVPSPQEGGEGVWVDFFGK
                     PAYTMTLAAKLAHVKGVKTLFFCCERLPGGQGFDLHIRPVQGELNGDKAHDAAVFNRN
                     AEYWIRRFPTQYLFMYNRYKMP"
     gene            complement(2505..3569)
                     /gene="tsaD"
                     /locus_tag="ACFM5C_000615"
     CDS             complement(2505..3569)
                     /gene="tsaD"
                     /locus_tag="ACFM5C_000615"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFC6068364.1"
                     /translation="MLVLGIESSCDETGVALYDTERGLRAHCLHTQMAMHAEYGGVVP
                     ELASRDHIRRLVPLTEGCLAQAGASYGDIDAVAFTQGPGLGGALLAGSSYANALALAL
                     DKPVIPVHHLEGHLLSPLLAEEKPDFPFVALLVSGGHTQIMAVRGIGDYALLGESVDD
                     AAGEAFDKTAKLLGLPYPGGAKLSELAESGRPEAFVFPRPMIHSDDLQMSFSGLKTAV
                     LTAVEKVREANGSETIPEQTRNDICRAFQDAVVDVLAAKVKKALLQTGFRTVVVAGGV
                     GANRKLRETFGNMTVQIPTPKGKPKHPSEKVSVFFPPTAYCTDNGAMIAFAGAMHLGK
                     GREVGAFNVRPRWPLSEIVR"
     gene            3576..3701
                     /locus_tag="ACFM5C_000616"
     CDS             3576..3701
                     /locus_tag="ACFM5C_000616"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068365.1"
                     /translation="MPLKTEKRILADFGTTAVSQKRNMPSEDRSDGIVAPYQSVP"
     gene            complement(3686..4873)
                     /gene="ccsB"
                     /locus_tag="ACFM5C_000617"
     CDS             complement(3686..4873)
                     /gene="ccsB"
                     /locus_tag="ACFM5C_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HFC6068366.1"
                     /translation="MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTR
                     SGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIF
                     LLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
                     FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVF
                     GFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAE
                     LVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWD
                     PKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSY
                     GTL"
     gene            complement(4866..6818)
                     /locus_tag="ACFM5C_000618"
     CDS             complement(4866..6818)
                     /locus_tag="ACFM5C_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HFC6068367.1"
                     /translation="MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGSFWAQIFGF
                     LGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSL
                     LDVKIAPEVAKRYLEVQGFQGKTINREDGSVLIAAKKGTMNKWGYIFAHVALIVICLG
                     GLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILGASNLSFRGNVNISEGQSADVV
                     FLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNH
                     PLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLE
                     FDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAV
                     EYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGKGR
                     KRLVADATKDAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYF
                     YEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGF
                     SEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSAR
                     SERDLQKEFPKHVESLQRLGKDLNHD"
     gene            complement(7095..7718)
                     /locus_tag="ACFM5C_000619"
     CDS             complement(7095..7718)
                     /locus_tag="ACFM5C_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6068368.1"
                     /translation="MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN
                     SGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAK
                     QQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLG
                     GQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR"
     gene            7924..8553
                     /gene="yihA"
                     /locus_tag="ACFM5C_000620"
     CDS             7924..8553
                     /gene="yihA"
                     /locus_tag="ACFM5C_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFC6068369.1"
                     /translation="MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLT
                     NHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQ
                     RKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVK
                     KLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPEEN"
     gene            complement(8674..11070)
                     /locus_tag="ACFM5C_000621"
     CDS             complement(8674..11070)
                     /locus_tag="ACFM5C_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFC6068370.1"
                     /translation="MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHY
                     QPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWG
                     VARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDK
                     ILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPE
                     RAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYE
                     KYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVE
                     ETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEK
                     MGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFN
                     RAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRY
                     SGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETT
                     PLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIM
                     YKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPK
                     SMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLT
                     LDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
                     "
     gene            11222..12337
                     /gene="pilM"
                     /locus_tag="ACFM5C_000622"
     CDS             11222..12337
                     /gene="pilM"
                     /locus_tag="ACFM5C_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HFC6068371.1"
                     /translation="MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQL
                     SGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQ
                     NLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVA
                     SRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAA
                     QTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVA
                     NYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQ
                     CVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL"
     gene            12340..12939
                     /locus_tag="ACFM5C_000623"
     CDS             12340..12939
                     /locus_tag="ACFM5C_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HFC6068372.1"
                     /translation="MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYL
                     FIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKVEELQLKRLQAA
                     KILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
                     SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN"
     gene            12940..13587
                     /locus_tag="ACFM5C_000624"
     CDS             12940..13587
                     /locus_tag="ACFM5C_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HFC6068373.1"
                     /translation="MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFK
                     SQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIP
                     NLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLS
                     RIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK"
     gene            13605..14150
                     /locus_tag="ACFM5C_000625"
     CDS             13605..14150
                     /locus_tag="ACFM5C_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HFC6068374.1"
                     /translation="MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAP
                     TLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILK
                     SGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
                     LLLNSSDKNTEQAAAPAAEQN"
     gene            14169..16478
                     /gene="pilQ"
                     /locus_tag="ACFM5C_000626"
     CDS             14169..16478
                     /gene="pilQ"
                     /locus_tag="ACFM5C_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HFC6068375.1"
                     /translation="MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKV
                     SFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLV
                     LNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAV
                     SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQTAAPAKQQAAAPAKQQ
                     AAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRS
                     LDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESG
                     GVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWD
                     QALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKY
                     KNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDE
                     LDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKW
                     GAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAK
                     IESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC
                     ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFK
                     TRGKKTDRRELLIFITPRIMGTAGNSLRY"
BASE COUNT         4594 a         4827 c         3891 g         3710 t
ORIGIN      
        1 aaatgccgtc tgaactgttc agacggcatt tttgattttc aaaccggaat tacagccccg
       61 ctgccgccct caatgcagca gctttgtcgg tgcgctccca agtgaactca ggttcttcgc
      121 ggccgaaatg tccgtaagcg gcggatttac tgtaaatcgg gcgcaagaga tcgagcattt
      181 ggacgatgcc tttggggcgc aggtcgaaat gttcgcgaac taaggtaatc agtttttcct
      241 cgctgatttt gcctgtgccg aaagtgtcga tggaaatcga agtcggttcg gcaacgccga
      301 tggcgtagga aacttggatt tggcattggg ttgccaatcc tgcggcgacg atgtttttcg
      361 ccacatagcg gcaggcgtag gcggcggaac ggtcaacctt ggacgggtct ttgccggaaa
      421 acgcgccgcc gccgtgcgga gccgcgccgc cgtaggtatc gacgatgatt ttacggccgg
      481 tcaaaccgca gtcgccttgc gggccgccga tgacgaagcg gccggtcggg ttgatcaggt
      541 atttggtttc gtcggtcagc agttcagacg gcaggacggg cttgataatc tgctcgatga
      601 cggcgttttt cagttcttcg taagcgatgg acggatcgtg ctgggtagag aggacgacgg
      661 tatcaatgcg ttttacctta ccggtttcgc tgtcgtaaac cacggtcaac tgcgcttttg
      721 cgtcgggacg cagccacggc aggcggccgt ctttacgcaa ttcgctttgg cgttgcatca
      781 ggcggtggct gtaatagatg gcaaacggca tcagggtcgg ggtttcgtcg caggcataac
      841 cgaacatcaa accttggtcg cctgcgcctt ggttcaagtc gataccttcg ccttcgttta
      901 cgccttgggc gatgtcgggg gattgttggt cgtagtacac gccgaccgcg cagccgttgg
      961 catcaaagcc cagctcggag gagttgtagc cgatgcgttt gatggtttcg cgtgcgactt
     1021 tgatgtagtc cacttgggcg gtggtggtga tttcgcctgc caatacgcac aagcctgtgt
     1081 tgaccaaagt ttctgcggcg acacgcgctt tggggtcttg cgccaagatg gcatccaaaa
     1141 tcgcatcgga tacttggtcg gcaactttgt ccggatggcc ttcggatacc gattcggaag
     1201 taaacagata ttcgctcatt gagattttcc ttgaaaaaca aaccatcttc ttcagacggc
     1261 atgttgtatg aacataatgt cgacagcggg aaatatagca aaatttccct attcatacca
     1321 ttcagttgag aaatattccc atttgaatgg cactttggaa tctctgcccg tacgtttctt
     1381 acaggcaaaa aaattcccgc atcaagcggg tttggattgc tctggtgagc cacatcggct
     1441 tttcaaccgt ccaccttact tttccttttg aaaagcaggt tggcatggaa ttcccaactc
     1501 ttaatgcagc gcggatggta gcagaaaagc ctttccgccg caatacttcc ctttttcaga
     1561 cggcatgttt cgtttacaat tcgggctgtt tccccctttg cgaaccgcca tgcacatcct
     1621 gttgaccgcc ctgctcaaat gcctctccct gctgccactt tcctgtctgc acacgctggg
     1681 aaaccggctc ggacatctgg cgttttacct tttaaaggaa gaccgcgcgc gcatcgtcgc
     1741 caatatgcgt caggcaggca tgaatcccga ccccaaaaca gtcaaagccg tttttgcgga
     1801 aacggcaaaa ggcggtttgg aacttgcccc cgcgtttttc agaaaaccgg aagacataga
     1861 aacaatgttc aaagcggtac acggctggga acatgtgcag caggctttgg acaaacacga
     1921 agggctgcta ttcatcacgc cgcacatcgg cagctacgat ttgggcggac gctacatcag
     1981 ccagcagctt ccgttcccgc tgaccgccat gtacaaaccg ccgaaaatca aagcgataga
     2041 caaaatcatg caggcgggca gggttcgcgg caaaggaaaa accgcgccta ccagcataca
     2101 aggggtcaaa caaatcatca aagccctgcg ttcgggcgaa gcaaccatcg tcctgcccga
     2161 ccacgtcccc tcccctcaag aaggcgggga aggcgtatgg gtggatttct tcggcaaacc
     2221 tgcctatacc atgacgctgg cggcaaaatt ggcacacgtc aaaggcgtga aaaccctgtt
     2281 tttctgctgc gaacgcctgc ctggcggaca aggtttcgat ttgcacatcc gccccgtcca
     2341 aggggaattg aacggcgaca aagcccatga tgccgccgtg ttcaaccgca atgccgaata
     2401 ttggatacgc cgttttccga cgcagtatct gtttatgtac aaccgctaca aaatgccgta
     2461 acgaaaataa aaatgccgtc tgaacaattt cagacggcat tttgtcatct gacgatttcc
     2521 gacagcggcc agcgcggacg gacattgaac gcaccgacct ccctgccctt gcccaggtgc
     2581 atcgcaccgg caaaggcaat catggcaccg ttgtccgtgc agtatgccgt cggcgggaaa
     2641 aacacgctga ctttttcgga cggatgtttc ggcttgcctt ttggggtcgg gatttgcacc
     2701 gtcatattgc cgaaagtttc acggagtttg cggtttgcac cgaccccgcc ggcgaccact
     2761 acggttctga accctgtctg caacagggct tttttcactt tcgccgccaa cacatcgact
     2821 accgcatctt gaaacgcacg gcaaatatcg ttgcgggttt gctcgggaat ggtttccgaa
     2881 ccgtttgcct cacgcacttt ttcaacggca gtcaaaacag cggttttcaa acctgaaaaa
     2941 ctcatctgca aatcgtcgga atgaatcatc gggcgcggaa aaacaaacgc ttcgggcctg
     3001 cccgattccg caagttccga cagtttcgca ccgcccggat acggcaagcc cagcagtttc
     3061 gccgttttgt cgaatgcctc gcccgccgca tcatcgacgc tctcgcccaa aagcgcgtag
     3121 tcgcctatgc ccctgaccgc cataatctgc gtatgcccgc ccgaaaccag cagcgcgaca
     3181 aaaggaaagt cgggtttttc ctccgccaac agcggcgaca gcagatgtcc ttccaaatga
     3241 tggacgggaa taacaggctt gtccaacgct aaagccagcg cgttggcgta gctcgaaccc
     3301 gccagcagcg caccgcccaa accgggcccc tgcgtaaagg caaccgcgtc aatgtcgcca
     3361 tacgatgcgc ccgcctgcgc caaacagcct tcagtcaacg gaacaaggcg gcggatatgg
     3421 tcgcggcttg ccaattccgg cacaaccccg ccgtattcgg cgtgcattgc catttgagtg
     3481 tgcaggcagt gcgcccgcaa tccacgttcc gtatcgtaaa gcgcaacacc tgtttcgtcg
     3541 caagaagact cgattcctaa taccaacatg gtctgatgcc gttaaaaact gaaaaacgta
     3601 ttttagcgga tttcggcacg actgccgtat cccaaaaacg gaacatgccg tctgaagacc
     3661 gttcagacgg catcgtcgca ccgtatcaaa gcgttccgta agaatgcagc ccgctcaaaa
     3721 acatattcac gccgataaag gcaaatgcgg ttacgaacaa accgataatc gcccaccacg
     3781 ccagcacttt gccgcgccaa ccggcaacca gccgcaagtg cagccaaacg gcgtaattga
     3841 gccagacgat gaacgcccac gtctctttcg gatcccaact ccaatagcgt ccccaagcat
     3901 ctgccgccca cagcgcaccc aaaatggtgg caatagtaaa gaacagaaag ccgacggcaa
     3961 tcgccttata catcacctcg tcgatcaatg ccgacggcgg cagccacagt tttccgcctt
     4021 ttccttccgc acgcagggaa accagttcgg caataccgag catcgcggaa atgcaaaacg
     4081 cgccgtaacc gataaagttt gccggaacgt ggattttcat ccaccaggac tggagcgcgg
     4141 gaatcagcgg ctggatggta tgcgcctcgc gggacacgct gtaccacaag acaaatccaa
     4201 ccacgaccgc cataaagccg aacacgaagc cgcccaattt ctgtatggcg aacttacctt
     4261 cataataaag atacatcagc gcggtaatca ccaaaaacag gatgaacact tcatacaggt
     4321 tggaaaccgg aatatgcccc gcatcgggac ggagcagata gctttcgtgc caacgtacca
     4381 gcagaccggt aaagcctgct acggcagaca cccatgcaaa cacggttccc atacccaaca
     4441 gcgtgttggt cggcacattt tttacgcttg ccaaaaccgc gcccgaaata taagcgaaca
     4501 gggcgaaaaa gacaaaggcg cactgccaca tgatcgccga ttggctgctg aggaaatacc
     4561 gcaacaggaa aatctctgcc gatttgatgt tgccgccata cagaccgacg gcggcatagg
     4621 caagcaatac gcttaaagga acaaaccagc gcatcggttt gaaaaaccaa cccaaaaaca
     4681 cggcaatacc ggcactcgcc cacaacatga ccgtttcgta aatgtccata tgcataccgg
     4741 aacgggtctg tacgaaaacc gtagccgcaa aaaccagcac ggcaaatacc caatcccaaa
     4801 gattcagatt gctgatcaaa gacttctgaa tcagcagctc gtgttccgga agggttttat
     4861 agtgttcagt catgattcaa gtccttgccg agccgttgca gactctcgac gtgttttgga
     4921 aattccttct gcaaatcccg ttcactgcgg gccgaagaca tggcaaaacg gattttgccg
     4981 tctgaaaaca atacccacgc ccgtttttcg cgcacataaa acatcaatac cgtacccaat
     5041 accaacagca ccgagccgag atagaccaaa agcgcacccg gggaacgggt catctgcaaa
     5101 cccgacgaac gcacctcgga aaacccatca agttgcagca gcataggcgc gggatattcg
     5161 gtcaaacccg tgtacgcatc catactgtgc agcaggaaac ggttccgcgc ttcatcctgc
     5221 tgccattcgg gcaagccgta ccggcgtatg gtttcatcca aagcagcgtt catcacgccg
     5281 taaagcattt cgtagaaata gccctgcatc ttatcctgct gctctttcgg gatattggac
     5341 gtaataaatt cgtccaatcc caaatagcct ttttgtgcaa agatgttcag cgtgttttcc
     5401 gcagccagca tgaattgttc gcggatttcg gcaggtgcgt ctttggttgc gtcggcaacc
     5461 agacgtttgc gccccttccc gtctttcaga aactcgcgca acgccataaa ggtgtccgct
     5521 ttcaactgct tgtccaaggg gatacgcagc cagcggtatt gctgctgcaa gccgctgcgc
     5581 gtgccggtaa tccaaaaata atcctgttcc tgcaaaaccg gcagcatata gtttttatat
     5641 tcgaccgcct gccctgccgc atcacggata cggtaaacaa tggaagggcc gatattggtg
     5701 tattttttac cttcctgagt aacggcgcgg acatcgttca gcgtggattt caggcttttt
     5761 tcccgttccg cgccctcgct catgtcctcc acattcatag aagtgaactg atcgaactca
     5821 agacgatatt tgtgtttgcc aatttccaac ggaaactggt gtatggatgt tgccttcaac
     5881 acgacaggct cgcgcgaagc atcacccaaa ttccacgcct tgaatgtcaa atccgaaccg
     5941 ccgtcggcaa aactcgcctg ataaatcgtg atgccgtgca aggtcaaagg atggttcacg
     6001 cggatggtgc gctcgagttt ctcaccggtt gccttgtccg tcacttcaat atcactggca
     6061 aaatcgcgcg gcataccggt attgtaaaag tcgatatgaa attttttcag tttgacttca
     6121 aaaggcaagt cctgaaccaa tatcccgttg tcggcattca ggaaaaccac atccgcactc
     6181 tgcccctcgg aaatattgac gttgccccta aatgagagat tggacgcacc caaaatactt
     6241 tcgggcttga aatccttggc ataaaccgcc tgattgtccg gaacaatccg accggtcagc
     6301 atacccagtt tcaacagcag gttactgtct atcaacccgc ccaggcaaat gacaatcaaa
     6361 gcaacatggg caaagatata gccccatttg ttcattgtgc cttttttggc ggcaatcaga
     6421 accgacccgt cttcacggtt aatggttttt ccctgaaaac cttgtacttc cagataacgt
     6481 ttggcaacct cgggcgcaat ttttacatcc aacagcgaag aatggcgcat cgccgccaga
     6541 gatttttctt taaccttttc ccgaaaagac ttcatttcgc gccagaacgg cggcacattg
     6601 cgaatcaggc acaaactggt agaaaccacc aaaaacatca tgataacgac aaaccatgcc
     6661 gaagcataga cgtcatacag tcccagaaaa ccaaaaatct gcgcccaaaa cgatccgaat
     6721 ttgaccaaat aatccgtctg cggctggttt tgctgcaaca ccgtaccgat aaccgatgca
     6781 atacccagca gactgagcaa agcgactgca aagcgcatgg agctgaaaaa agcgaaccac
     6841 ggacgggaaa gaagtggggg agatctacgg gatttactca ttgtgtgttt attccgccat
     6901 caggaatatg ggaaagcaga attgggcaaa cagaaaacaa cgtcccgatt ctactgtctt
     6961 gatgcttttt atttcaagac aatgaagaca gcctgcatcg attccaacgg ttgcgattga
     7021 aaaaacttat cgcagaattg cctgaagccg tctgaaaact tttcagacgg cctctaaaac
     7081 agactattgc ggaattaacg caaaccttgg ataaagttgg cgaccgcttt caaatcttct
     7141 tcagacatac ggtttgcaat atcttccatg atggtatttt tacgctgacc ggacttgtag
     7201 gcattcatct gttcaacaat atatgcctga tgctgaccgc ccaaacgcgg ataagcctga
     7261 atttcgcttc cgcctcccgg catacccgca ccgctcggac cgtggcagga catacacgcc
     7321 ggcacttttt tatcgctcaa accgccgcga tagattttcg cacccaattc gggattttcc
     7381 ttaggattgg cttcaccgga tttgggctgc tgtttggcat agaatgcgga tacgttcaaa
     7441 atatcctgat cgctcaaatt cattaccacc ggtttcatca cagctgccga accgtgggtg
     7501 cgtttaccgt cgcggatgcc gatagtttga tgatagatgt aagcagtatg ctgtgccgcc
     7561 aaacgcggat acatcgcaat gccgctgtta ccgtctgctg catggcaagc cgcacaaacc
     7621 gttgcggcaa cctgtttgcc tttttccacg tctgctttgg gagaggcgga aaccgcaccg
     7681 gcagccaaaa caaaggccaa taaagtcaat cgtttcatgg agtgctcctg attacagcat
     7741 tggataacgc aacaatgctc tttttatatt caaatacggg atttttgacc cgattaaaac
     7801 cgatgattct gtaaacgtgt tattctatac taaatttaca ttaaattacc actgtgtttc
     7861 acataaaacc aaccgcatat ttttgctgtc ggacaaacgg cggcggaaaa caaggatatg
     7921 cccatgaacc tttttcaaaa cgccaaattc ttcacgacgg tcaaccacct taaagacctg
     7981 cccgacaccc ctctcgaaat tgcctttgtc ggcaggagca atgccggaaa atccagtgcc
     8041 atcaataccc tgaccaacca tgtccgtctt gcctacgttt caaaaacacc cggacggacg
     8101 cagcatatca acttcttcga gctgcagaac ggcaatttta tggtcgattt gcccggctac
     8161 ggttatgccc aagtccccga agcagtacgc gcacattggg tcaatctgct cggcgactat
     8221 ctgcaacagc gcaaacagct tatcgggctg gttttgatta tggatgcccg ccatccttta
     8281 aaagaactcg acatccgtat gctggacttt ttccacacga ccggcagacc ggttcacatc
     8341 ctgctgtcaa aagccgacaa attatccaaa aacgaacaga taaaaaccct gtcccaagtc
     8401 aaaaaactgc tcaaacctta ttccgacagg caaaacatca gcgtacagct gttttccagc
     8461 ctgaaaaaac aaggtattga cgaggccaac cgaactgtcg gaagctggtt tgacgcagca
     8521 gatgccgccg cttcctctcc agaggaaaac tgaccccaat tatacggaaa ccgtatttcc
     8581 cccacttgac cgaccgcaaa catttaaaaa attgccactg ccaaatctaa aatgccgtct
     8641 gaaagacttt tcagacggca ttttgcggag tctttaaaac agagaatcca actgctgctg
     8701 tttggaacca gtattactcg gaagcaccgg cgtttcctgc atatcttggc ggacttcgtc
     8761 atccgccgcc tgccgtccgc cttctgccgc gcccccgtca tcttcttttg cccgtcggga
     8821 aggttgcggc gcaataccgc tgttgtccag cgtcaagccc ggatcggtta ccatacgttc
     8881 cttcatatag tattcgccat tgctgctgac cacaccttca ggcattttca tccccttgcc
     8941 ctgctttcct ttcaacgcaa aacgcatata gtccacccaa accggcaccg caatcgtacc
     9001 gccgtagccg acacgcccca tactcttagg tttgtcgaag ccgatatata cggcagtaac
     9061 cacatcaggg ttaaaaccga caaaccacgc atccttattg tcattggtcg tacccgtttt
     9121 accggcaata tccgttcttc ccaacgcagc tgcccccctt gccgtaccaa cacggaccac
     9181 atcctgcata atcttataca taatataggc attgcgcgga tcgattgcct gaggcgcatt
     9241 ttgcccggcc accaaaggtt gcatttgggc gcgcaacctg ccgtctctgt cataaatctt
     9301 atcgattacg tgcgaagaaa ccctatatcc gccgttcgca aatacgctat atgcctccgc
     9361 cactttcaac ggcgttgtct cgcccgtacc taaagccata gacaggcttg ccggcagctc
     9421 ggacgacctg aagccgaaac gccggatata ctgttgcgcg taaccgacac cgatagacat
     9481 caaaatacgg atggaaacca tattcttgga agccgtcaga gcctgtctca aagtaatgta
     9541 gccggaatat ctgccgtctg aatttttagg tgtccaaacc gaaccgttcg gccctttccc
     9601 cggcagggaa atcggcgcat cgttaaccac tgtggacgcg gtcatcccct tagataatgc
     9661 cgccgaatag acaaacggct taaaggtcga acccggctgc cgcattgcct gaacggcacg
     9721 attgaatgtt ttgctgtgaa aatcataacc gccgaccagc gcgcgcacag ctccggtttt
     9781 tgcatccagc gaaaccaaag ccccctgcag caacggctct tgaaccaccg cccaacgccc
     9841 gccgttgttt ttgacacgga tgaccgcgcc cctgcggata cggtcctccc ccattttttc
     9901 attattgacc gcgcgggccg caaaacccaa ggcgcgcctg tcaagcgtaa cccgcctgcc
     9961 gccgggcagc tgtatgacga catttttctt tttagtcaca tccaacacaa cggcgggaac
    10021 cattttatcg acggtataga gtcccgacag atactggctg acagtctcct cgacatcttc
    10081 actcttactc aaatcgatat agttttccgc accgcggtag ctgctgccgc gatcgaaatt
    10141 ccgtagagcc ttgcgcaatg cctcggttgc caccttctga tgatcggcgc ggaccgtggt
    10201 ataaacctta aaaccctgcg tataggcatc ttcaccgtat ttctcataca gttcctgacg
    10261 caccatttcc gccacatata aagcactctg atcgattttc cgaacaaacc gctcgtaatg
    10321 cagttcctca ttcaacgcct gatcgcgctg ttgcacggta atcatcttct cctcgagcat
    10381 attgttcaaa atatacttct ggcgcaactt ggcacgttcc ggattaacaa tcggattata
    10441 ggcagacgga gccttgggca gtcccgcaag catggcggct tccgccaaag tcaaatctcg
    10501 gacattctta ttgaaataga tttgcgcggc agatgcaaaa ccataggcgc gctgaccgag
    10561 gtaaatctga ttgaaataca actcgaggat tttgtctttg cttaaagact gctcgatttt
    10621 ataggcaagc aacacctcat tgaatttgcg tgtgaacgtt ttttcactgc tcaaataaaa
    10681 atttttcgcc acctgctgcg taatcgtact cgcacccgac tgcacgctgc cggacacgac
    10741 attgccgacg gcagcgcggg caacacccca aacatccacc ccccaatgcc ggtaaaagcg
    10801 tttatcctcg gcggcgataa ccgcattccg caacacctct gggaaatcgc cgatttttgt
    10861 aaattcgcgc cgctgctccc catacatacc gatgacttcc ccatccgccg aataaatagt
    10921 caacggcatt ttaggctggt aatgctgcaa agaatccaaa gacggtagtt tcggatacgt
    10981 taccaaaata gcaatggcaa ccaaacccac tccaaataca caaaacccaa aaaccaaacc
    11041 aaaacaagtc gttaaaatct ttttaatcat agctgaataa taatttacca ttattggtat
    11101 taaataaagt aaaatagcaa ccgatttcta caaagcacgg tttcaatgtg caaagaacaa
    11161 ggaatccatt acggataccg aaacggttac tcactgtaca aataaagcag gaactttcat
    11221 catgcgcttg tttaaaagct tgaaaaaccc taaaaaaaca gatgccaagc tccctaaaaa
    11281 atcttcggga ctcaataacc gcgcggcaat cggcatcgat atcgaccagc attccatcaa
    11341 aatggtccaa ttgtcaggac gtagtttaaa ccaaattcaa ttggaaaaat acgtcattgc
    11401 caaattacca aagaatatca ttcaaggcaa taaagtccaa aattacgatc aacttgttac
    11461 atatttgcaa caagcctatg ccaaactggg tacttcgtgc aaaaacatca tcgcgtccgt
    11521 cccgcaaaat ctggcaacca tcgaacaatt gacctacaca gacaaagatg cagaattaga
    11581 cctgcagggg ttcgtggagt cctccatctc cgaagtcagc tcgatatcgc tcgaagaagc
    11641 caattacgac tatcaggtct tgtcccaatc ggccgccggc gaagctgtgt tggccgtcgc
    11701 atcgagaaag gatgaaatcg aacccctgat tgacgcattc aacgccgccg gtatgaaatt
    11761 atccgcgctt gatgtggaca ttttcggaca atacaacgcc tacgcgctat ggataaacca
    11821 tttcgccccc gagcttgcag ccgaaaaagt cgccattttc ggcgtatatg ccgcacagac
    11881 ctacgccttg gtcatccaag acggaaaaat cctatacaaa caggaaacct ccgtcagcga
    11941 agaacagctc aaccaactca tccagcgcac ctatcaggta acagaagaaa aagcggaaga
    12001 aatcatcaac tccccgcaaa aaccttccga ttaccaagaa agcgtggcaa actatttcaa
    12061 ccagcagatt acccaagaaa tacaaagggt cttgcagttt tattacacca cgcagaccgc
    12121 agacgatatg accgacatca agcatatcct gctgaccggg gaagcggcgc gccaggaagg
    12181 tatcgcccaa accgtcgcct cacaaaccaa tgcagatgta caatgcgtcc atcccgcgcg
    12241 ttattttgcg gacaacctca aaacagacaa acaacaattc gaacttgatg cgccgacact
    12301 gaccagggcg ttcggtttgg cggtacgggg attataatta tgaacaattt aatcaaaatc
    12361 aacctcctcc cctacaggga agagatgaac aagcgcaaac agcagcagtt taaaacgctg
    12421 atgtacggtg ccgtgctgac gggcgttgcc gccgttgcgg caacctacct gtttatcgac
    12481 aatatgatca ataaccagtc ggaaagaaac acgctgctgg aaacctccat cgcacacttg
    12541 gataccgagc tgtcggaaat acaaaagctc aaacaggaaa aagatgcctt cctgattaag
    12601 aaaaacaaag tcgaggagct ccagctcaaa cgcctccaag ccgcaaaaat cctcgacagc
    12661 ctgaatgagg ccgtccccgg aagcacctac ctgacctcgc tggatgccgt taccgccgac
    12721 tcttatcggc tcagcggcag gacatccagc gacaaccgcg ttgccgccat gatgagggcg
    12781 atgcccaata ccggcatatt caagcaaccc gaattgttaa gcatcaagaa aaacaattcg
    12841 catcaagaat ttacccttca ggcaacatta caacccatcg taaaggcggc cgaatccaaa
    12901 gagaatccgg cttcgggaaa cgcacaggag gcaaactgaa tggcttctaa atcatctaaa
    12961 accaacttgg atctcaacaa ccttcacctg ctcaaccttc ctgccaggct ttttatcgcc
    13021 ctgctggccg ttgccgccgt gctggggctc ggttatgccg gattgttcaa aagccagatg
    13081 gaatcccttg aggaatacga agcaaaagaa accgaactga aaaacaccta caaacagaaa
    13141 agtatcgacg cggccagcct gaacaacctg agggacgaac ttgcctcaat ccgctctgcc
    13201 ttcgatatca tgttgaaaca gctgccgaca gatgcagaaa ttcccaatct ggttcaagag
    13261 cttcatcagg caggttcgag caacggcctg cgcttggaca gcgttatgcc ccaacctccc
    13321 gtagatgacg gccccatcaa aagattaccc tattccattt ccattaccgg aaattacgaa
    13381 cagatcagcc aatttacccg cgatgtcggc agcctctccc gaatcattac ccttgagtcg
    13441 ctgaaaatcg cccaatctcc ggaaaacggc ggcaatcctg acggcaagag cagcatcctg
    13501 aacctcagtg ccattgccac cacctaccaa gcaaaatccg tagaagagct tgccgcagaa
    13561 gcggcacaaa atgccgagca aaaataactt acgttaggga aaccatgaaa cactatgcct
    13621 tactcatcag ctttctggct ctctccgcgt gttcccaagg ttctgaggac ctaaacgaat
    13681 ggatggcaca aacgcgacgc gaagccaaag cagaaatcat acctttccaa gcacctaccc
    13741 tgccggttgc gccggtatac agcccgccgc agcttacagg gccgaacgca ttcgacttcc
    13801 gccgcatgga aaccgacaaa aaaggggaaa atgcccccga caccaagcgt attaaagaaa
    13861 cgctggaaaa attcagtttg gaaaatatgc gttatgtcgg cattttgaag tctggacaga
    13921 aagtctccgg cttcatcgag gctgaaggtt atgtctacac tgtcggtgtc ggcaactatt
    13981 tgggacaaaa ctacggtaga atcgaaagca ttaccgacga cagcatcgtc ctgaacgagc
    14041 tgatagaaga cagcacgggc aactgggttt cccgtaaagc agaactgctg ttgaattctt
    14101 ccgacaaaaa caccgaacaa gcggcagcac ctgccgcaga acaaaattaa gaagaggatt
    14161 actccattat gaataccaaa ctgacaaaaa tcatttccgg tctctttgtc gcaaccgccg
    14221 cctttcagac agcatcggca ggaaacatta cagacatcaa agtttcctcc ctgcccaaca
    14281 aacagaaaat cgtcaaagtc agctttgaca aagagattgt caacccgacc ggcttcgtaa
    14341 cctcctcacc ggcccgcatc gccttggact ttgaacaaac cggcatttcc atggatcaac
    14401 aggtactcga atatgccgat cctctgttga gcaaaatcag tgccgcacaa aacagcagcc
    14461 gtgcgcgtct ggttctgaat ctgaacaaac cgggccaata caataccgaa gtacgcggga
    14521 acaaagtttg gatattcatt aacgaatcgg acgataccgt gtccgccccc gcacgccccg
    14581 ccgtaaaagc cgcgcctgcc gcaccggcaa aacaacaggc tgccgcaccg tctaccaagt
    14641 ccgcagtatc cgtatccaaa ccctttaccc cggcaaaaca acaggctgcc gcaccgttta
    14701 ccgagtccgt agtatccgta tccgcaccgt tcagcccggc aaaacaacag gcggcggcat
    14761 cagcaaaaca acagacggca gcaccagcaa aacaacaggc ggcagcacca gcaaaacaac
    14821 aggcggcagc accagcaaaa caaaccaata tcgatttccg caaagacggc aaaaatgccg
    14881 gcattatcga attggctgca ttgggctttg ccgggcagcc cgacatcagc caacagcacg
    14941 accacatcat cgttacgctg aaaaaccata ccctgccgac cacgctccaa cgcagtttgg
    15001 atgtggcaga ctttaaaaca ccggttcaaa aggttacgct gaaacgcctc aataacgaca
    15061 cccagctgat tatcacaaca gccggcaact gggaactcgt caacaaatcc gccgcgcccg
    15121 gatactttac cttccaagtc ctgccgaaaa aacaaaacct cgagtcaggc ggcgtgaaca
    15181 atgcgcccaa aaccttcaca ggccggaaaa tctcccttga cttccaagat gtcgaaatcc
    15241 gcaccatcct gcagattttg gcaaaagaat ccgggatgaa cattgttgcc agcgactccg
    15301 tcaacggcaa aatgaccctc tccctcaaag acgtaccttg ggatcaggct ttggatttgg
    15361 ttatgcaggc acgcaacctc gatatgcgcc aacaagggaa catcgtcaac atcgcgcccc
    15421 gcgacgagct gcttgccaaa gacaaagcct tcttacaggc ggaaaaagac attgccgatc
    15481 tgggcgcgct gtattcacaa aacttccaat tgaaatacaa aaatgtggaa gaattccgca
    15541 gcatcctgcg tttggacaat gccgacacaa ccggaaaccg caatacgctt gtcagcggca
    15601 ggggcagcgt gctgatcgat cccgccacca ataccctgat tgttaccgat acccgcagcg
    15661 tcatcgaaaa attccgcaaa ctgattgacg aattggacgt acccgcgcaa caagtgatga
    15721 ttgaggcgcg tatcgtcgaa gcggcagacg gcttctcgcg cgatttgggc gttaaattcg
    15781 gcgcgacagg caagaaaaag ctgaaaaatg atacaagcgc attcggctgg ggggtaaact
    15841 ccggcttcgg cggcgacgat aaatgggggg ccgaaaccaa aatcaacctg ccgattaccg
    15901 ctgccgcaaa cagcatttcg ctggtgcgcg cgatttcctc cggtgccttg aatttggaat
    15961 tgtccgcatc cgaatcgctt tcaaaaacca aaacgcttgc caatccgcgc gtgctgaccc
    16021 aaaaccgcaa agaggccaaa atcgaatccg gttacgaaat tcctttcacc gtaacctcaa
    16081 tcgcgaacgg cggcagcagc acgaacacgg aactcaaaaa agccgtcttg gggctgaccg
    16141 ttacgccgaa catcacgccc gacggccaaa tcattatgac cgtcaaaatc aacaaggact
    16201 cgcctgcgca atgtgcctcc ggtaatcaga cgatcctgtg tatttcgacc aaaaacctga
    16261 atacgcaggc tatggttgaa aacggcggca cattgattgt cggcggtatt tatgaagaag
    16321 acaacggcaa tacgctgacc aaagtccccc tgttgggcga catccccgtt atcggcaacc
    16381 tctttaaaac acgcgggaaa aaaaccgacc gccgcgaact gctgattttc attaccccga
    16441 ggattatggg tacggccggc aacagcctgc gctattgatg cgtcaaaata agggcatatg
    16501 ttttacggca tatgcccttt ctttatgctt tttgccgcga ccgaaatgcc gtcattcccg
    16561 cgcaggcggg aatccagtcc gttcagtttc ggtcatttct gataaattcc tgttgctttt
    16621 catttctgga ttcccacttt tgtgggaatg acggcggaag gggtaaatcc tcgcaatcca
    16681 aagcctcgtc atttccacaa aaaacagcaa cccggaacag caacttaaaa ccccgtcatt
    16741 cccgcgcagg caggaatcca acttgtccgg ttccggttgt ttttcgtctc gtaacttttg
    16801 agccgtcatt cccgcgcagg cgggaatcta ggtctgtcgg ttcaggaact tatcggataa
    16861 aacggtttct ccaaccctgc gttctagatt cccactttcg tgggaatgac gggatatggg
    16921 tttccgtgcg gacgtgttcg gatttccgcc tgcgcgggaa tgacggcgac agatgcccaa
    16981 cggtctttat agtggattaa caaaaatcag gacaaggcga cg
//
LOCUS       DAXHNP010000025        16946 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.025, whole genome shotgun sequence.
ACCESSION   DAXHNP010000025 DAXHNP010000000
VERSION     DAXHNP010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16946
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.025"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(93..932)
                     /locus_tag="ACFM5C_000627"
     CDS             complement(93..932)
                     /locus_tag="ACFM5C_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFC6068376.1"
                     /translation="MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVD
                     ATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNG
                     DWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
                     AAPADNAASGTASAPADGAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPG
                     IPGIGKKDDWAPRIKKGKETLHKHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSG
                     AKF"
     gene            1217..1292
                     /locus_tag="ACFM5C_000628"
     tRNA            1217..1292
                     /locus_tag="ACFM5C_000628"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1250..1252,aa:Arg,seq:ccg)
     gene            complement(1357..2550)
                     /locus_tag="ACFM5C_000629"
     CDS             complement(1357..2550)
                     /locus_tag="ACFM5C_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HFC6068377.1"
                     /translation="MYRHIEYYPGDPILSLVETFKNDPRPEKVNLSIGIYFDDEGKMP
                     VLESVRRAETARAATPAPSPYLPMEGLDTYRSAVQHLLFGKDNPALAQGRIATVQTLG
                     GSGALKVGADFLHRWFPEARAYVSDPTWDNHRGIFEGAGFEVGTYPYYDPATVGVKFD
                     EMTAFFNTLPENSVLILHPCCHNPTGVDMSEQQWDEVLHIIKTRKLIPFMDIAYQGFG
                     GDLDSDAYAVRKAVEMELPLFVSNSFSKNLSLYGERVGGLSVVCPNKEEADLVFGQLK
                     FTVRRIYSSPPAHGAYIAADVMNSPELYALWQNEVYMMRDRIRAMRQKLYDVLTAQIP
                     DRDFTYFIKQRGMFGYTGLSVEQVRRLRDEFAVYLLDSGRMCVAGLNTSNTDYVARAF
                     AEVLK"
     gene            complement(2571..3659)
                     /gene="trmA"
                     /locus_tag="ACFM5C_000630"
     CDS             complement(2571..3659)
                     /gene="trmA"
                     /locus_tag="ACFM5C_000630"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFC6068378.1"
                     /translation="MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFR
                     IWHEGGEMFYAMFEKGQKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRW
                     YAVEFLSTLSGEMLVTMIYHKRLDAEWMQAAQALQQQLDISVIGRSRGQKIVLKQDYV
                     TETLKVGNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTL
                     PLSEKFERVLATEISKTSISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLK
                     DGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETH
                     AVERAALFDQFPFTHHIESGVLLKKKIL"
     gene            3806..4906
                     /gene="aroC"
                     /locus_tag="ACFM5C_000631"
     CDS             3806..4906
                     /gene="aroC"
                     /locus_tag="ACFM5C_000631"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFC6068379.1"
                     /translation="MAGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFD
                     LDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATSF
                     RPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV
                     GEKEIRFEGCEHISQNPFFAANHSQIAELENYMDGVRKSLDSVGAKLHIEAANVPVGL
                     GEPVFDRLDAEIAYAMMGINAVKGVEIGAGFDSVTQRGSEHGDELTPQGFLSNHSGGI
                     LGGISTGQDIRVNIAIKPTSSIATPRRSIDINGNPIELATHGRHDPCVGLRSAPIAEA
                     MLALVLIDHALRHRAQNADVQVNTPDITLSNK"
     gene            4998..5423
                     /locus_tag="ACFM5C_000632"
     CDS             4998..5423
                     /locus_tag="ACFM5C_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FINO family protein"
                     /protein_id="HFC6068380.1"
                     /translation="MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPL
                     ALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEE
                     QAIAQNHPFVQQALQQQSAQAAAETLSVEAEAAESSAAE"
     gene            complement(5497..7482)
                     /gene="parE"
                     /locus_tag="ACFM5C_000633"
     CDS             complement(5497..7482)
                     /gene="parE"
                     /locus_tag="ACFM5C_000633"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HFC6068381.1"
                     /translation="MAKNNQYSESSITVLKGLEPVKERPGMYTRTDSPTHICQEVIDN
                     AADEALGGFATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKF
                     NKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVG
                     KCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEA
                     HTQTWHYPDGLKSYLTDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEE
                     GSCANESYVNLIPTPLGGTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTA
                     FVLSARVLDPQFQGQTKDKLTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQ
                     AQARMRSVKKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKA
                     TQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAI
                     LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA
                     LDQNELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPE
                     GADDETRDIFVKLMGKGEAAARRAWMEREGDTAELDI"
     gene            complement(7549..8097)
                     /locus_tag="ACFM5C_000634"
     CDS             complement(7549..8097)
                     /locus_tag="ACFM5C_000634"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFC6068382.1"
                     /translation="MNLTEGDTVLDREGYRPNVGIILINNRDEVFWGKRVREHSWQFP
                     QGGIKPGESPETAMYRELYEEVGLLPQHVKIIGRTRDWLRYDVPNNWVRREWRGSYRG
                     QKQIWYLLRLTGRDCDVNLRATRHPEFDGWRWHQYWAPVDEVIDFKRDVYLGALKELS
                     SRFLRGMESYEDFAARQSSDNR"
     gene            8239..9534
                     /gene="serS"
                     /locus_tag="ACFM5C_000635"
     CDS             8239..9534
                     /gene="serS"
                     /locus_tag="ACFM5C_000635"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFC6068383.1"
                     /translation="MLDIQLLRSNTAAVAERLAARGYKFDAARFNALEEQRKAVQVKT
                     EELQASRNSISKQIGALKGQGKHEEAQAAMDQVAQIKTDLEQAAADLEAVQKELDAWL
                     LSIPNLPHEDVPFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSG
                     ARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEHYTPYIVDDTTLQGTGQLPKFAEDL
                     FHVTRGGDESKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGK
                     DTRGLIRQHQFDKVEMVQIVHPEKSYETLEEMVGHAENILKALELPYRVITLCTGDMG
                     FGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKDENGKNRLVHTLNGSGL
                     AVGRTLVAVLENHQNADGSINIPAALQPYMGGVAKLEVK"
     gene            complement(9612..10610)
                     /locus_tag="ACFM5C_000636"
     CDS             complement(9612..10610)
                     /locus_tag="ACFM5C_000636"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008720 - D-lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0070404 - NADH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6068384.1"
                     /translation="MKIAIYGTKSYDREHFTRANRHFGFELEFFDFMLDAKTAKMAEG
                     AEAVCIFVNDDGSRPVLEKLAQIGVKTVALRCAGFNNVDLKAAEELGLKVVRVPAYSP
                     ESVAEHTVGLMLTLNRRIHKAYQRTRDANFSLEGLTGFNMYGKTAGVIGTGKIGIATM
                     RILKGFGMNLLAYDPFCNPEAEKIGGRYVELNELYARSDIITLHCPSTPENHYMLNEA
                     AFDKMKDGVMIINTSRGGLIDSSAAIEALKRRKIGALGMDVYENERELFFEDKSNDVI
                     TDDVFRRLSSCHNVLFTGHQAFLTEEALGNISEVTLSNIREVGQTGDCGNAVRADG"
     gene            complement(10735..11811)
                     /gene="prfA"
                     /locus_tag="ACFM5C_000637"
     CDS             complement(10735..11811)
                     /gene="prfA"
                     /locus_tag="ACFM5C_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFC6068385.1"
                     /translation="MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAE
                     LTPVVEVFQNYRLAQSDLADAEEMLSDPEMKDFAAEEIEAAKAKINTLDTELQKLLLP
                     KDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYK
                     EVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELN
                     PADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAA
                     RLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMD
                     GDLAEITNALIAEHQAELLAAMGD"
     gene            complement(11901..12671)
                     /locus_tag="ACFM5C_000638"
     CDS             complement(11901..12671)
                     /locus_tag="ACFM5C_000638"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6068386.1"
                     /translation="MRLTDTHCHLADSVLRGNLAQVLAEARQAGVWRFIVPATRPQDW
                     QSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVGEIGLDFY
                     DKTQTPPQRERQIQVFVRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQGGIVHA
                     FSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLKKEI
                     NTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP"
     gene            complement(12674..13666)
                     /locus_tag="ACFM5C_000639"
     CDS             complement(12674..13666)
                     /locus_tag="ACFM5C_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HFC6068387.1"
                     /translation="MKQKIFVLYTGGTIGMTQSSEGLRPDTALVGQALAPFSNGMDFD
                     WHVCGTLIDSSAVQLQNWCAWLDIIAAALPQYDGVLVLHGTDTLAYTANLFALALQGL
                     DKPIVLTGSQWPYNAVGSDAPRNLATAVAAFPLGLKQTLIAFDGKLYPAVGSSKVSTE
                     TAAGFDNPHFGALAEWDETQGWHNVRIPNQDAADVSDGLKIRYPDPQAKIAVRTLIPG
                     FAVQELADGLGQLPAHALILQSYGHGNTPADEGFIRAVQDFTQQGKLLLNISQVRQGR
                     TAAVYAQGNAFRNSGIINGGKCNLETATALMTLAVSEGWGADEVKHELQRLGLV"
     gene            complement(13733..14416)
                     /locus_tag="ACFM5C_000640"
     CDS             complement(13733..14416)
                     /locus_tag="ACFM5C_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6068388.1"
                     /translation="MFALLEAFFVEYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISG
                     MGYTNPHIMFAVGMLGVLVGDGIMFAAGRIWGQKILKFKPIARIMTPKRYAQVQEKFD
                     KYGNWVLFVARFLPGLRTAVFVTAGISRKVSYLRFLIMDGLAALISVPVWIYLGEYGA
                     HNIDWLMAKMHSLQSGIFIALGVLAAALAWFWWRKRRHYQLYRAQLSEKRAKRKAEKA
                     AKKAAQKQQ"
     gene            complement(14605..15939)
                     /gene="glmM"
                     /locus_tag="ACFM5C_000641"
     CDS             complement(14605..15939)
                     /gene="glmM"
                     /locus_tag="ACFM5C_000641"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFC6068389.1"
                     /translation="MAKKYFGTDGVRGEVGQFPITPDFVLKLGYAAGQVLVQHDTDQK
                     PTVLIGKDTRISGYMLEAALVAGFTAAGVNVIQTGPLPTPGVAYLTRALRLSAGVMIS
                     ASHNAYSDNGIKFFAEGGVKLSDEIELEIEAKIDEEMKTQPSARLGRARRISGADDRY
                     IEFCKSTFPSHSDLRGLKLVIDTANGAGYGVAPKVFHELGAQVVSIGDEPNGYNINEK
                     CGATYTKTLQAAVLQHEADYGIALDGDGDRLMMVDKNGKVYDGDSLIYVIAKARAREG
                     INIGGVVGTVMTNMAMEIALKEQGVDFCRAKVGDRYVLEQLNQRGWLVGGEASGHILC
                     MDKHNTGDGIISALQVLAALQTLNQDLAAVCADWQPYPQTMINVRIGKGQNWQEASKD
                     VLAEVEKELEGKGRVVLRASGTEPVVRVMVEARQADWARDGAERIASAIGSL"
     gene            complement(16069..16920)
                     /gene="folP"
                     /locus_tag="ACFM5C_000642"
     CDS             complement(16069..16920)
                     /gene="folP"
                     /locus_tag="ACFM5C_000642"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFC6068390.1"
                     /translation="MARHGWQAGRFEIGLDKPKIMGIVNLTPDSFSDGGAYSQNAKTA
                     LAHAERLLKEGADILDIGGESTRPGADYVSSEEEWARVEPVLVEVAGWGVPVSLDTRR
                     TVVMEKALALGGIDIINDVAALTDEGAVELLARQTDTGICLMHMQGLPETMQINPKYQ
                     DVVGEVARYLKARAAECIAAGIAPQRITLDPGFGFGKTLQHNIALMRHLPELMAETGF
                     PLLIGVSRKRMIGELTGEADAAARVHGSVAAAVAAVARGAQIVRVHDVKATADALKVW
                     EALGINL"
BASE COUNT         3757 a         4741 c         4547 g         3901 t
ORIGIN      
        1 tcctgatttt tgttaattca ctataaattc ccataaaaaa acggagcaga tacctgcccc
       61 gtttttattt aatccgaaat tttaatctaa atttaaaatt ttgcaccgga ttggtttgcc
      121 atataatcaa cagccgcttt gacttcgtca tcgctcaaac cggcattgcc gcctttggca
      181 ggcatcgcgt taaagccttc aagggcgtgt ttgtgcaagg tttctttgcc ttttttgata
      241 cgcggtgccc aatcgtcttt tttgcctatg ccgggaatac cgggaatcga accgccgtgg
      301 cacacctgac aggttgcttc gaagactttt ttaccgtcaa cgccgaccgc aggggctgcc
      361 gcacccttgt cttctgcctt cgcttctgcc ggagctgcac catcggcagg agcagaagct
      421 gttcctgaag cggcattgtc ggcaggcgca gcctcatcag gattcgggaa agaaccgccg
      481 cttttgttcg ccatgtaagt aatcgcccgt ttgagttcct gatcggtcag gtctgccgca
      541 ccgcctttgg caggcatggc gttaaagccg ttcagcgcgt gttggaacaa ggtatcgaag
      601 ccttgcgcga tacgcggtgc ccaatcgccg ttgtgttcca gtttcggagc gttcggcaca
      661 ttgctgtccg ccgcgtggca ttggatacag attttgccga aaatctgttc gccttggcgt
      721 tcgccgacgg ggatgccgtc gcccatcgtc aattgtccga cgggctggat acgggtctgc
      781 gttgccgctt ccgtagtggc atcgacatcg ccgaacgagc cgctgcccgc cagcttaatc
      841 aggaaataaa ggactgcaat aacaataacg ataccgctca caagggtaaa cagtgcagag
      901 ccttgggctt tgttgtcgcg gagttgtttc atttggtagg cctcgccgtc aggttaggtt
      961 gtgctgtaaa ttatagtttg gtgtgttaaa cgcagttaac aatattttgc tggattatac
     1021 tgaattcaca gggtctttcc aatcgctatc attgaaaata tgaaaaaatt tgccaacggt
     1081 atctgtataa aacaaataat cctttgaaaa taatggttta tcctcaagaa aactctcctt
     1141 atgccgccat acgccgcctg ccggcgcaag ataacctttg ccaatttgca gaatttacgt
     1201 taaccttacg ttttacgcac ccatagctca gttggaagag tgtcagtttc cgaagctgga
     1261 ggtcacaggt tcgatccctg ttgggtgcgc caattataaa gagaccgtct gaaagataaa
     1321 tatttttcag acggtctttt gacttacttc aaactcttat ttcaagactt ccgcaaatgc
     1381 gcgggcaaca tagtcggtat tcgacgtatt cagtccggcg acgcacatcc tgccggaatc
     1441 cagcaggtaa acggcaaatt cgtcgcgcag cctgcggact tgttccacgc tcaatcctgt
     1501 gtagccgaac atgccgcgct gtttgatgaa ataagtgaaa tcgcgatcgg ggatttgcgc
     1561 agttaagaca tcataaagtt tctgccgcat cgcacggatg cggtcgcgca tcatataaac
     1621 ctcgttttgc cacaaggcgt aaagttcggg gctgttcatc acgtcggcgg cgatatacgc
     1681 gccgtgcgcg ggcgggctgg agtagatgcg gcggacagtg aatttgagct gtccgaacac
     1741 caaatccgct tcttccttat tcgggcaaac cacgctcagg ccgccgacgc gctcgccgta
     1801 gagcgacagg ttttttgaga aggaattgct gacgaacaag ggcaattcca tttccaccgc
     1861 tttgcggacg gcgtaggcat cgctgtccaa atcgccgccg aagccttggt aggcgatgtc
     1921 cataaacgga atcagtttgc gcgttttgat gatgtgcaac acttcgtccc attgttgttc
     1981 cgacatatcc acgccggtcg ggttgtggca gcagggatgg aggatcagga cgctgttttc
     2041 gggcagggtg ttgaaaaacg cggtcatttc gtcgaatttc acgccaacag tggcagggtc
     2101 gtaatatggg taagtgccga cctcgaaacc tgcgccttca aaaatgccgc gatggttgtc
     2161 ccaagtcggg tcgctgacgt aggcgcgcgc ttcgggaaac cagcggtgca ggaagtccgc
     2221 cccgactttg agtgcgcccg agccgcccaa ggtttgtacg gtagcgatgc gtccttgcgc
     2281 gagcgcaggg ttgtctttgc cgaacaataa atgctgcacc gcgctgcggt aagtgtccaa
     2341 gccttccatc ggcaggtagg gcgacggcgc aggcgtggcg gcgcgggcgg tttcggcacg
     2401 gcgcacggat tccaacacgg gcattttgcc ttcgtcgtcg aaataaatgc ctatgctcaa
     2461 attgactttt tcagggcgcg ggtcgttttt gaaggtttcg accaaactca aaatcgggtc
     2521 gcccggatag tattcgatgt gtcggtacat agtccttacc ttttactttt tcaaaggatt
     2581 ttctttttca acaatacacc actttcgata tggtgcgtaa acgggaattg gtcgaacagg
     2641 gcggcgcgtt cgaccgcatg ggtttccacc aaggtgtcca aattggcacg cagcgtttcg
     2701 ggattgcagg aaatgtagat gatgttgtca aactgcgaca ccagcttcaa agtttcctca
     2761 tcgataccgg cacgcggcgg atcgacgaaa atagtggaaa atgcgtaatc cgtcaaagca
     2821 ataccgccat ccttaaggcg tttaaactca cgttttctgg tataggcttc ggtaaattct
     2881 tcagcagaca gacgggcgat tttgatgttg ccgatgcggt tggcttcgat attccattgc
     2941 gccgcgctga tggaggtttt ggagatttcg gttgccaaaa cacgttcaaa cttttcagat
     3001 aaaggaagcg taaagttgcc gtttccgcaa tacagttcga gcaaatcccc atccaatcct
     3061 tctgctgcac cgcaggccca ttcaagcatt ttctgacaca cggcggcatt cggttgggta
     3121 aaactgcctt caatttgccg ataacggaaa tcccggttgc cgaccttcaa agtttccgtt
     3181 acatagtcct gttttaagac tattttctgt cccctgctcc gcccaataac ggaaatatcc
     3241 aactgttgct gtaacgcttg cgccgcctgc atccactcag catcaagcct tttgtggtaa
     3301 atcatggtaa ccagcatttc cccgctgagc gtggacagaa attcgacggc ataccagcgt
     3361 tttttgagtt cgggggattg cgcggcggcg gcgatcagct cgggcatgag gcggttgaca
     3421 gcctcggaag ctgcttcaaa acggtcgcag cgtatcatgc ttgcgccgct ggctttctgc
     3481 cctttttcaa acatggcata aaacatttcc ccgccttcgt gccaaatacg gaactcggca
     3541 cgcatacggt aatgtttgtc cggagattcg tacacttccc actcaggaac atccaaacct
     3601 gcaaaaaggg ttttaaggta gtctttttta ccttgaagct gctgcgtgta gtcattcata
     3661 tcgctatcct gaaaaatcag accggattat aagccgattt gcctcgccgc acgcaaactc
     3721 tttgactgcc gccccttcaa tgacggacgg gcttttgtgc taaaatccgc catctttcca
     3781 cactataccg ataaagggaa aaatcatggc aggcaacact ttcggacaac tcttcaccgt
     3841 taccaccttc ggcgaaagcc acggcgcggg tttgggctgt atcatcgacg gctgcccgcc
     3901 cggcttggaa ttaagcgaag cggatatcca atttgacctc gaccgacgca aacccggcac
     3961 cagccgccac gttacccaac gccgcgaagc cgaccaagtc gaaatcctct ccggcgtatt
     4021 cgaaggcaaa accaccggca cgcccatcgc cctcttaatc cgcaataccg accagcgcag
     4081 caaagactac ggcaacatcg ccaccagctt ccgccccggc cacgccgact atacctattg
     4141 gcacaaatac ggcacgcgcg actaccgcgg cggcggcagg agctccgccc gtgaaaccgc
     4201 cgcccgcgtt gctgccggag ccgttgccaa aaaatggttg aaagaaaaat tcggcacgga
     4261 aatcaccgcc tacgttaccc aagtcggcga aaaagaaatc cggtttgaag gctgcgaaca
     4321 catttcccaa aatccttttt ttgccgccaa ccatagccaa attgccgagc tggaaaacta
     4381 tatggacggc gtgcgcaaat ccttggattc cgtcggcgcg aagctgcata tcgaagcagc
     4441 caatgtccct gtcggcttgg gcgaacctgt ttttgaccgc ctcgatgccg aaatcgccta
     4501 cgcgatgatg ggcatcaacg ccgtcaaagg cgtggaaatc ggcgcaggtt ttgacagcgt
     4561 aacgcaacgc ggcagcgaac acggcgacga actgaccccg caaggcttcc tgtccaacca
     4621 ctcaggcggc atcctcggcg gcatcagcac cgggcaagac atccgcgtca atatcgccat
     4681 caaacccacc agctccatcg ccaccccgcg ccgcagtatc gacatcaacg gcaaccccat
     4741 cgaactcgcc acgcacggca ggcacgaccc ctgcgtcgga ctgcgctccg cgccgatcgc
     4801 cgaagccatg ctcgcgttag tcctcatcga ccacgccctg cgccatcgcg cgcaaaatgc
     4861 cgacgttcag gttaatacgc ccgacattac cctttcaaac aaataaaaat ttagccaaaa
     4921 cacagacttt ataatagaat atcgagcatt gccgtgcagc cttgacgcac gggtttgttt
     4981 agaggaatac aaccgaaatg acacaagaaa ccgctttggg cgcggcacta aaatccgccg
     5041 tccaaactat gagcaaaaag aaacagaccg aaatgatcgc cgaccacatc tacggcaaat
     5101 acgatgtgtt caaacgcttc aaaccgttgg cgctcggcat cgatcaggat ttgattgccg
     5161 ctttgccgca atacgatgcc gcactgattg cacgcgtcct cgccaaccac tgccgccgtc
     5221 cgcgctatct gaaagccttg gcgcgcggcg gcaaacgttt cgatttgaac aaccgtttca
     5281 aaggcgaagt tacccccgaa gaacaggcga tcgcgcaaaa ccatcctttt gtgcagcagg
     5341 ctttgcaaca gcagtccgcc caagctgccg ccgaaacgct gtctgttgaa gccgaagcag
     5401 ccgaatcttc cgcagcagaa taaatcccca aacgaaatgc cgtctgaaaa ccgatttggt
     5461 ttcagacggc attttttcgt atgcggcaat cacggttcaa atatcgagtt ccgccgtatc
     5521 gccttcgcgt tccatccagg cacggcgggc ggcggcttcg cctttgccca tcagtttgac
     5581 gaagatgtcg cgcgtctcgt catccgcgcc ttctgggatt tgtacctgca acaggcggcg
     5641 ggtgtcgggg tgcatggtag tatctttgag ctggtctggg ttcatctcac ccaagccttt
     5701 gaaacggctg atggaataag cagtttcttt aacgccttct ttttgcagcc gctctaaaat
     5761 gccgtcaagt tcgttttggt cgagggcgta gaatttgcgg gcgggtttgc ttttaccttg
     5821 tgcgttgaca tctacgcgga acagcggcgg ctgggcgacg tagatgtgtc cgtcagcgac
     5881 cagtttcggg aagtggcggt agaacagggt cagcagcaaa acttgaatat gcgagccgtc
     5941 cacgtcggca tcggacagga tggcgatttt gccgtaacgc aggccgctta aatcgggatg
     6001 gtcgttgatg ccgtgcggat cgacgccgat ggcaactgaa atgtcgtgga tttcggcgtt
     6061 gccgaagagc tggtcggggt ggacttcaaa gctgttgagc actttgccgc gcaggggcag
     6121 gatggcctgg gtggctttgt cgcgggcgag tttggctgag ccgccggcgg aatcgccttc
     6181 gacaaggaag agttcgtttt cgcggatgtc ttcgctttcg cagtcggtca gcttgccggg
     6241 caggacggcg acgccgctgc cttttttctt ttcgattttc ttaaccgaac gcatccgcgc
     6301 ctgcgcctga cggatggcga gttcggcaat ttttttaccg aagtccacgt tttggttcag
     6361 ccacaattcc aaagggtcgc ccgctacagc ggcgacaagt ttcagcgcgt cgcggttggt
     6421 cagcttgtct ttggtctgac cttggaactg cgggtcgagg acacgggcag agaggacaaa
     6481 ggcggttttg ccgaacacgt cgtcgctttg tactttcacg ccgcgcggca agaggttgtg
     6541 cagattgatg aaattgttga cggcgttgaa cacggcttgt ttcaagcctg cttcatgcgt
     6601 gccgcccaaa ggggtgggga tgaggttgac atagctttcg ttggcacacg agccttcttc
     6661 cagccaagtc agggcaaacg ccgctccttc gccgatgctg aaatcgccgt tgtgttcgtc
     6721 tgaaatgtag ttttcgcaag agaacagcgg cacagcttct tgcgcgtcgg caatcaggtc
     6781 ggtcagatag cttttcaggc cgtcggggta gtgccaggtt tgggtgtgcg cttcgtcttc
     6841 gcctttgacc ggacgggtca gggaaacgcg cacacccggc agcagcacgg ctttggcacg
     6901 cagcaggcgt tcgagttcgg gaatgctgta attcgggctt tcaaaatatt tgccgtccgg
     6961 ccagacgcgc acttcggtgc cgctgtcttt gacggcgcat ttgcccactt gtgccaacgg
     7021 ttcgaccacg tcgccgccgg caaacacgat acggtggatt ttgccttcac gtttgaccgt
     7081 tacctcaagg cgggtggaga gggcgttggt gacggatacg cccacgccgt gcagtccgcc
     7141 tgaaaaggca tacgcgctgc cgccgtcttt tttgttgaac ttgccgcccg cgtgcagacg
     7201 ggtgaacacg agttcgacta cgggtacgcc ttcttcaggg tgcaggccga cgggaatacc
     7261 gcggccgtta tcacggacgg aaagcgaacc gtcttcatga atttgcacgt cgattgcagt
     7321 cgcgaaacca cccaacgcct cgtccgccgc attatcaatc acttcctgac agatgtgggt
     7381 cgggctgtcg gtgcgggtgt acatgccggg acgttctttg accggctcca agcctttgag
     7441 gacggtgatg ctggattcgc tgtattggtt gtttttagcc ataggaataa tctgaaagta
     7501 agaaaaacaa cgctttcaga cggcctgaaa gcgttgcgtt ccgttgtttt agcggttgtc
     7561 ggaagattgg cgggcggcaa agtcttcata actttccata ccgcgcagga agcgggaaga
     7621 gagttctttc aacgccccca aataaacgtc gcgtttgaaa tcaatcactt cgtcaacggg
     7681 cgcccaatat tgatgccaac gccagccgtc aaattcgggg tggcgggtgg cgcgcaggtt
     7741 gacatcgcaa tctcggccgg tcaggcgcag gagataccaa atctgcttct gcccgcgata
     7801 ggatccgcgc cattcgcggc gtacccagtt gttcggcacg tcataacgca gccagtcgcg
     7861 cgtgcggccg ataattttga cgtgttgcgg caaaagcccg acttcttcgt acaactcgcg
     7921 gtacatggcg gtttcggggc tttcgcccgg cttgatgccg ccttgcggaa actgccaaga
     7981 atgttcgcgc acgcgcttgc cccaaaagac ttcgtcgcgg ttgttgatta agatgatacc
     8041 gacattgggg cgatagcctt ccctgtccaa cacggtgtcg ccctccgtta aattcaatct
     8101 tgggattttc ccacaaatcg gacggttttg acaaatcgga cgatagggtt caggcatgtc
     8161 gaaacacaga cggattcggg aaaatatctt aaatttggtt tacaataata cgtttcaaat
     8221 taattcggga atcagaccat gttagatatc caattgctcc gcagcaacac cgccgctgtg
     8281 gcggaacgct tggcggcacg cggttacaag tttgatgccg cgcgtttcaa tgcgctggaa
     8341 gagcagcgaa aagccgtcca ggtgaaaacc gaagagctgc aagcctcgcg caacagcatt
     8401 tccaaacaaa tcggcgcact gaaaggtcag ggcaaacatg aagaggcgca ggcggccatg
     8461 gatcaagtcg cccaaatcaa aaccgatttg gaacaggcag ccgccgattt ggaagccgtg
     8521 caaaaggaac tggacgcatg gctgttgagc attccgaacc tgccgcatga ggacgtgcct
     8581 ttcggtaagg atgaaaccga aaacgtcgaa gtccgcaaag tcggcacgcc acgcgaattt
     8641 gactttgaaa tcaaagacca tgtcgatttg ggcgaacctt tgggtttgga tttcgaaggt
     8701 ggcgcgaaac tttccggcgc acgatttacc gtgatgcgcg gacaaatcgc ccgcctgcac
     8761 cgcgcgctgg cgcaattcat gctcgatacg cacacgctga aacacggcta caccgagcat
     8821 tacacaccct atatcgtgga cgacaccacc ttgcaaggca cgggtcagct gccgaagttt
     8881 gcagaagatt tgttccacgt tacccgtggc ggcgacgaga gcaaaaccac gcaatatctg
     8941 attccgacag ctgaagttac cctgaccaat accgttgccg gcagcattat cccgtccgaa
     9001 caactgccgc tgaagctgac cgcgcattcg ccctgtttcc gcagcgaggc gggttcgtac
     9061 ggcaaagaca cgcgcggtct gattcgccag caccagttcg acaaagtgga aatggttcaa
     9121 atcgttcatc ccgaaaaatc atacgaaacg ctggaagaaa tggtcggcca tgccgaaaac
     9181 atcctgaagg ctttggaact gccctaccgc gtgattaccc tgtgtaccgg cgacatgggc
     9241 ttcggcgcaa ccaaaacgta tgacttggaa gtttgggtac cggcgcaaaa cacctaccgc
     9301 gaaatctcaa gctgctccaa ctgcgaagat ttccaagccc gccgcatgaa ggcgcgtttc
     9361 aaagacgaaa acggcaaaaa ccgcttggta catactttga acggctccgg cttggctgtc
     9421 ggcagaacgc tggtcgccgt attggaaaac catcaaaacg ccgacggcag catcaacatc
     9481 cctgccgcac tgcaaccgta tatgggcggc gttgccaagt tggaagtgaa ataagtttgc
     9541 aagctgcctg aacgtcaaat gccgtctgaa acctggttca gacggcattt cctttaaact
     9601 tttaaaacac atcaaccgtc ggcacgaacc gcattgccgc aatcgccggt ctgtccgacc
     9661 tcgcggatat tggacagcgt aacttccgaa atattaccca acgcctcttc cgtcaaaaat
     9721 gcctgatggc cggtaaacag cacattatga caagacgaca ggcggcggaa cacgtcgtcg
     9781 gtaatcacat cgttggattt gtcttcaaaa aacaattcgc gttcgttctc gtacacgtcc
     9841 atacccaatg cgccgatttt ccggcgtttc aacgcctcaa tcgcggcaga actgtcaatc
     9901 agaccgccac ggctggtgtt gataatcatc acgccgtctt tcattttgtc gaacgccgct
     9961 tcgttcagca tatagtggtt ttccggcgtg gaggggcaat gcagcgtgat gatgtccgac
    10021 cgggcataca gctcgttcaa ctccacatac ctgccgccga ttttttccgc ttcggggttg
    10081 caaaacggat cgtaagccag caggttcatg ccgaaaccct ttaaaatccg catggttgca
    10141 ataccgattt tccccgtgcc gataacgccc gccgttttgc cgtacatatt gaaaccggtc
    10201 agaccttcca gcgaaaaatt cgcatcgcgg gtacgctgat aggctttgtg gatacggcgg
    10261 ttcaacgtca gcatcagacc gaccgtatgt tccgcaaccg attcgggcga ataggcaggc
    10321 acgcgcacga ctttcaagcc caactcttca gccgccttta aatccacatt attgaagccg
    10381 gcacaacgca acgccacagt tttcacgcca atttgcgcca atttttccaa cacgggccgg
    10441 ctgccgtcgt cgtttacaaa aatacagacc gcttccgcgc cttccgccat tttcgccgtt
    10501 ttcgcatcca gcataaaatc aaaaaactcc agctcgaagc cgaaatgccg gttggcgcgg
    10561 gtaaaatgtt cgcggtcata gcttttcgta ccgtaaatcg caatcttcat caatatgtcc
    10621 agttgtcgcc tatggttgag aaacggcata atacactgaa ttcaaacaaa tcagtagaat
    10681 atggcagatt aaaattgatt gcatacacgg catttccatt tcaaaacaca aaactcaatc
    10741 gcccattgcc gccagaagct ccgcctgatg ctcggcaatc agggcattgg tgatttctgc
    10801 caagtcgccg tccatcacaa aatccagctt gtgcagggta aggttgatgc ggtggtcggt
    10861 taccctgcct tggggatagt tgtaggtgcg gatgcgttcg ctgcggtcgc cgctgccgat
    10921 gagggatttg cgctcggcgg cttctttggc ttgggcttcg cgtttttgcg cgtcgttcag
    10981 gcgggcggcg aggactttca ttgcctgcgc tttgttggca tgttggctgc ggccgtcttg
    11041 gcattcgacc accatgccgg tgggcaggtg ggtgatgcgg acggcggagt cggttttgtt
    11101 gatgtgctga ccgcccgcgc cggatgcgcg gaaggtgtcg atgcgcaggt cggctgggtt
    11161 cagttcgatg tcttccagtt cgtccgcttc gggcatgacg gcaacggtgc aggcggaggt
    11221 gtggatgcgg ccttggcttt cggtggcggg gacgcgctgc acgcggtgtc cgcccgattc
    11281 aaatttcaaa cggctgtacg ccccgagtcc gacaatacgg gcgatgactt ctttatagcc
    11341 gcccaattcg ctttcgttgg cggacacgat ttcaacctgc caacggttgc gctcggcgta
    11401 gcggctgtac atacgcagca aatcgccggc aaacagcgcg gcttcgtcgc cgcccgttcc
    11461 ggcgcgtatt tcgatgaaga tgtttttgtc gtcgtcggca tctttgggca gcagcagttt
    11521 ttgcagttcg gtatcgagcg tgttgatttt ggcttttgcc gcttcgattt cttcggcggc
    11581 aaaatctttc atttcggggt cggacaacat ttcttcggca tccgccaagt cgctttgggc
    11641 aagccgatag ttttggaaca cttcgacgac gggggtcagt tcggcgtgtt cgcgcgtgag
    11701 cttgcggtag ttgtccatat ctgccgtggc ttcgggttgc cctaaaaggt gggtaacttc
    11761 ttccaaccgg tcgccgagtt gttgcagttt ttctaagata gacggcttca taattcttcc
    11821 ataacaaacg ccgcctgaat ttcagacggc atcaaaacgc ggtcattata atatattttc
    11881 tgaatattca aaaagataat ctagggacgg agcaggctgt cggcattgcg ttccgttatc
    11941 gcggcgatgt ccgccacgcc gacaccgcgt atctgcgcgg caatttcggc aatccaaaga
    12001 atattggcag gcgtattaat ctcttttttc agcataaacg ggctgtcggt ttccaatacg
    12061 aaatccccgt cgttcaaggc tttaagcgta tcgcgcactt tacgcgcgtt cggattgagc
    12121 aacaacgaac cgatgccgat tttgaaaccc agtttcgtca acacgcgcgc ttcttccgcg
    12181 ctgcctgaga aggcgtgaac gatgccgcct tgggcaaagc ctgtctgttt gacggcggcg
    12241 gcgatgtcgg cggtggcttt gagattatgg ataatcacgc ggcggcgcag ggtttgcgcg
    12301 atggcaagct ggcggacgaa aacttggatt tgccgttcgc gctgcggcgg cgtttgggtt
    12361 ttgtcgtaaa aatccaaacc gatttcgccg acccatgcct gcggataacg tgccaacatc
    12421 gcttccaggc ggacgcaatc acgctcggca atgccgtctg aaaaccaagg atggatgccg
    12481 agcgcaatac ggatttgacc gtgttcggac ggcatttccg acagttccgc cacgctttgc
    12541 caatcctgcg ggcgcgtcgc gggaacgata aaccgccaca cacccgcctg tcgcgcttcg
    12601 gcaagcacct gcgccagatt gccgcgcaaa acagaatcgg caagatggca atgtgtgtcg
    12661 gtcagcctca tcttcacacc agccccaacc gctgcaactc gtgtttcacc tcgtccgcgc
    12721 cccatccttc agaaacggca agcgtcatca atgcggttgc ggtttccaaa ttgcatttgc
    12781 cgccgttgat gatgcctgag ttgcggaacg cgttgccttg cgcgtaaacg gcagcggttc
    12841 tgccttgtcg gacttggctg atgttgagca gcagtttgcc ttgctgcgta aagtcttgca
    12901 cggcgcggat gaaaccttcg tctgcgggcg tgttgccgtg tccgtaactt tgcaggataa
    12961 gggcgtgggc gggaagctgt ccgagtccgt cggcaagttc ttggacggca aagccgggga
    13021 taagcgtgcg gacggcgatt tttgcctgcg ggtcgggata acggattttg aggccgtctg
    13081 aaacatctgc cgcgtcctga ttcgggatgc ggacattgtg ccagccctgg gtttcgtccc
    13141 actccgccag tgcgccgaaa tgcggattgt cgaaaccggc ggcggtttcg gtgctgactt
    13201 tgctgctgcc gacggcggga taaagtttgc cgtcaaaggc aataagcgtc tgcttcaatc
    13261 cgagtgggaa tgcggcaacg gcagtcgcta gattgcgcgg cgcgtcgctg cccacggcgt
    13321 tgtacggcca ttgggagccg gtcaggacga ttggcttgtc caaaccctgc agggcgaggg
    13381 cgaacagatt ggcggtatag gcgagcgtgt ccgtgccgtg cagcaccaaa acgccgtcgt
    13441 actgcggcag cgcggcggca atgatgtcca gccaagcgca ccagttttgc agttggacgg
    13501 cggaagaatc aatcagcgtc ccacaaacgt gccaatcgaa atccatgccg tttgaaaacg
    13561 gcgcgagtgc ctgcccgacc agcgcggtat cggggcgcag gccttcgctg ctttgcgtca
    13621 tgccgatggt gccgccggta taaaggacaa aaattttctg tttcatggct catcctgaaa
    13681 atgcaaagac cgcctgaaac gcgaaatgcg tccggacggt cgaaaatctg atttactgct
    13741 gcttctgtgc cgcttttttc gctgcctttt ccgccttgcg tttggcgcgt ttttcgctca
    13801 attgtgcgcg gtaaagctga taatgtcggc gtttgcgcca ccagaaccac gccagcgccg
    13861 ccgccagcac gcccaatgcg atgaagatgc cggattgcag gctgtgcatt ttcgccatca
    13921 gccaatcgat gttgtgcgcg ccgtactcgc ccaagtaaat ccaaacgggc acggaaatca
    13981 gcgcggcaag cccgtccata atcagaaagc gcagatacga tactttgcgg ctgatgccgg
    14041 cggtaacgaa aacggcagtc cgcaaacccg gcaggaagcg ggcgacaaac agaacccagt
    14101 tgccgtattt gtcgaatttt tcctgaacct gtgcgtaacg tttcggcgtc atgatgcgcg
    14161 caatcggttt gaacttgagg attttctgcc cccagatgcg tccggcggcg aacatgatgc
    14221 cgtccccgac caatacgccg agcataccga ctgcaaacat aatatgcgga ttggtataac
    14281 ccatacccga aatcacgccg cctgttacca aggtcaaatc ctcgggaatc ggcacgccga
    14341 aaccgcagat gaccaaaacg aaaaacacgg ccgcgtagcc gtattcgaca aaaaaggctt
    14401 ccaaaagggc aaacatagcg gatattccat tgtcggagat aaaaagtcag aacaagccga
    14461 aacattttct gcgcgaaacg gcattctatc aaagattatg ccgtctgaaa gcggcagggg
    14521 gcagattcgc gccctctgcc ggacgttcag acggcattta aacaggaaaa ccgccgctgt
    14581 tgaaacggtt ttgcctgatt ttgcctaaag gctgccgatg gcggaagcaa tacgttccgc
    14641 accgtcgcgc gcccaatccg cctgccgcgc ctccaccatc acgcgcacga cgggttcggt
    14701 tcccgaagcg cgcaacacga cacgcccttt gccttcgagt tctttttcca cttccgccaa
    14761 cacgtctttt gaggcttcct gccagttttg ccctttgccg atacggacat taatcatcgt
    14821 ttgcggatac ggctgccagt cggcgcaaac ggcggcaagg tcttggttca gcgtttgcaa
    14881 tgccgccaaa acctgcaagg cggaaataat gccgtcgccg gtgttgtgtt tgtccatgca
    14941 caaaatatgg ccgctggctt cgccgccgac gagccagccg cgttggttca gctgttccaa
    15001 cacatagcgg tcgccgactt tggcgcggca gaaatccacg ccctgctctt tcagggcgat
    15061 ttccatcgcc atattggtca tgaccgtgcc gaccacgccg ccgatgttga taccttctcg
    15121 ggcgcgggct ttagcaatga cgtaaatcag gctgtcgccg tcgtaaacct taccgttttt
    15181 atcgaccatc atcaggcggt cgccgtcgcc gtctaaggcg atgccgtagt cggcttcatg
    15241 ctgtaaaacg gcggcctgga gtgtcttggt ataagtcgca ccgcattttt cgttgatgtt
    15301 gtagccgttg ggttcgtcgc cgatgctgac gacctgtgca cccagttcgt gaaacacctt
    15361 gggtgcgaca ccgtaccccg cgccgttggc ggtatcgata accaacttca aaccacgaag
    15421 gtcggaatgg ctgggaaagg tggatttgca aaattcgata tagcggtcgt ccgcaccgct
    15481 gatacggcgt gcgcgcccga ggcgtgcaga aggctgggtt ttcatttctt cgtcgatttt
    15541 ggcttcgatt tccaactcga tttcatcgga aagcttcacg ccaccctcgg caaagaattt
    15601 gatgccgttg tcggaatagg cattatgcga cgcggaaatc atcacaccgg cggacaaacg
    15661 cagcgcacgg gtcagataag ccacgccggg cgtaggcagc ggaccggttt ggataacgtt
    15721 gacacctgcg gcggtaaaac ctgccaccaa agcggcttcc agcatataac cggaaatacg
    15781 cgtatccttg ccgattaaaa cggtcggttt ctggtcagtg tcgtgctgaa ccaaaacctg
    15841 ccccgccgca tagccgagtt tcaatacaaa atcgggcgta atcggaaact gcccgacttc
    15901 gccgcgcacg ccgtccgtgc cgaaatattt ttttgccatg tgttgctccg agaatgtgaa
    15961 ccgttgtccg agattataca gtctgtttgt gccctgctgt ctgcaccgtt gatgccgtct
    16021 gaagccgccc cgtccttttc agacggcatg aagtatgcga accgctgttt acagattgat
    16081 gcccaacgct tcccacacct tcaacgcgtc cgccgtcgcc ttcacgtcat gcacccgcac
    16141 aatttgcgcg ccgcgcgcca cagccgccac agccgccgcc acgctgccgt gtacgcgcgc
    16201 cgccgcgtct gcctcgccag tcagctcgcc tatcatacgt ttgcgcgaca cgccgatgag
    16261 cagcggaaaa cccgtttccg ccatcaattc gggtaaatgc cgcatcagtg cgatattgtg
    16321 ttgtaaggtt ttgccgaaac cgaaaccggg gtcgagtgtg atgcgttgcg gggcgatgcc
    16381 tgccgcgatg cattccgccg cccgcgcttt caaataccgc gccacttcac caacaacatc
    16441 ctgatatttc ggattaatct gcatggtttc aggcaaaccc tgcatatgca tcaggcaaat
    16501 acccgtgtcc gtctggcgcg ccagcaattc gaccgcgcct tcgtcggtca acgccgccac
    16561 atcgttaata atatcgatgc cgccgagtgc caacgctttt tccataacca ccgtgcggcg
    16621 cgtgtccaaa ctgacgggaa cgccccatcc cgcgacttct accaatacag gctcaacccg
    16681 cgcccattct tcttcggacg aaacataatc cgcacccggc cgcgtcgatt cgccgccaat
    16741 gtcgagaatg tccgcaccct ctttcaaaag ccgttcggcg tgcgccaaag cggttttggc
    16801 attttgcgaa tacgcgccgc cgtcggaaaa agaatcaggc gtgagattca cgatgcccat
    16861 aattttcggc ttgtccaaac cgatttcaaa ccgtcctgcc tgccaaccgt gtcgtgccat
    16921 ctgaactcct cccaaaataa aaaaac
//
LOCUS       DAXHNP010000026        16743 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.026, whole genome shotgun sequence.
ACCESSION   DAXHNP010000026 DAXHNP010000000
VERSION     DAXHNP010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16743
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.026"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            264..908
                     /gene="rplC"
                     /locus_tag="ACFM5C_000643"
     CDS             264..908
                     /gene="rplC"
                     /locus_tag="ACFM5C_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFC6068391.1"
                     /translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
                     GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
                     MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
                     GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
     gene            908..1528
                     /gene="rplD"
                     /locus_tag="ACFM5C_000644"
     CDS             908..1528
                     /gene="rplD"
                     /locus_tag="ACFM5C_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFC6068392.1"
                     /translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
                     SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
                     RKMYRAGMATILSQLARDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
                     NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
     gene            1525..1839
                     /gene="rplW"
                     /locus_tag="ACFM5C_000645"
     CDS             1525..1839
                     /gene="rplW"
                     /locus_tag="ACFM5C_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFC6068393.1"
                     /translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLANATKPEIKA
                     AVELLFGVQVASVTTVTTKGKTKRFGRTLGRRSDVKKAYVSLAAGQELDLEAAAAAAD
                     KE"
     gene            1845..2678
                     /gene="rplB"
                     /locus_tag="ACFM5C_000646"
     CDS             1845..2678
                     /gene="rplB"
                     /locus_tag="ACFM5C_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFC6068394.1"
                     /translation="MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRN
                     NNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
                     YIIAPRGIQVGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
                     SAVLLAKEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
                     TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
                     G"
     gene            2685..2963
                     /gene="rpsS"
                     /locus_tag="ACFM5C_000647"
     CDS             2685..2963
                     /gene="rpsS"
                     /locus_tag="ACFM5C_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFC6068395.1"
                     /translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
                     IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
     gene            2972..3301
                     /gene="rplV"
                     /locus_tag="ACFM5C_000648"
     CDS             2972..3301
                     /gene="rplV"
                     /locus_tag="ACFM5C_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFC6068396.1"
                     /translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
                     ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
                     INVTVGN"
     gene            3311..4003
                     /gene="rpsC"
                     /locus_tag="ACFM5C_000649"
     CDS             3311..4003
                     /gene="rpsC"
                     /locus_tag="ACFM5C_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFC6068397.1"
                     /translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
                     QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
                     IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
                     DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
                     QRKAGRRNAAAN"
     gene            3987..4403
                     /gene="rplP"
                     /locus_tag="ACFM5C_000650"
     CDS             3987..4403
                     /gene="rplP"
                     /locus_tag="ACFM5C_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFC6068398.1"
                     /translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
                     RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
                     LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
     gene            4403..4594
                     /gene="rpmC"
                     /locus_tag="ACFM5C_000651"
     CDS             4403..4594
                     /gene="rpmC"
                     /locus_tag="ACFM5C_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFC6068399.1"
                     /translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
                     RVRRDIARIKTVLTEKGAK"
     gene            4594..4857
                     /gene="rpsQ"
                     /locus_tag="ACFM5C_000652"
     CDS             4594..4857
                     /gene="rpsQ"
                     /locus_tag="ACFM5C_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFC6068400.1"
                     /translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
                     KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
     gene            5080..5448
                     /gene="rplN"
                     /locus_tag="ACFM5C_000653"
     CDS             5080..5448
                     /gene="rplN"
                     /locus_tag="ACFM5C_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFC6068401.1"
                     /translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
                     DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
                     TRELRTERFMKIVSLAPEVL"
     gene            5460..5783
                     /gene="rplX"
                     /locus_tag="ACFM5C_000654"
     CDS             5460..5783
                     /gene="rplX"
                     /locus_tag="ACFM5C_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFC6068402.1"
                     /translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
                     KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
                     SIIGA"
     gene            5793..6332
                     /gene="rplE"
                     /locus_tag="ACFM5C_000655"
     CDS             5793..6332
                     /gene="rplE"
                     /locus_tag="ACFM5C_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFC6068403.1"
                     /translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAV
                     ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
                     LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
                     KTDEEAKALLSLFKFPFKG"
     gene            6335..6640
                     /gene="rpsN"
                     /locus_tag="ACFM5C_000656"
     CDS             6335..6640
                     /gene="rpsN"
                     /locus_tag="ACFM5C_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HFC6068404.1"
                     /translation="MAKKALINRDLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
                     RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
     gene            6656..7048
                     /gene="rpsH"
                     /locus_tag="ACFM5C_000657"
     CDS             6656..7048
                     /gene="rpsH"
                     /locus_tag="ACFM5C_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFC6068405.1"
                     /translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
                     YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
                     IVSTSKGVMTDRKARSQGVGGELLCIVA"
     gene            7062..7595
                     /gene="rplF"
                     /locus_tag="ACFM5C_000658"
     CDS             7062..7595
                     /gene="rplF"
                     /locus_tag="ACFM5C_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFC6068406.1"
                     /translation="MSRVAKNPVTVPAGVEVKFGTEALVIKGKNGELSFPLHSDVAIE
                     FNDGKLTFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
                     LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRTFRAPEPYKGK
                     GVRYVGEVVVMKEAKKK"
     gene            7609..7962
                     /gene="rplR"
                     /locus_tag="ACFM5C_000659"
     CDS             7609..7962
                     /gene="rplR"
                     /locus_tag="ACFM5C_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFC6068407.1"
                     /translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
                     DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
                     VKALAEAARENGLSF"
     gene            7981..8499
                     /gene="rpsE"
                     /locus_tag="ACFM5C_000660"
     CDS             7981..8499
                     /gene="rpsE"
                     /locus_tag="ACFM5C_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFC6068408.1"
                     /translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
                     DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
                     EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
                     LTVEDILGVNHG"
     gene            8492..8677
                     /gene="rpmD"
                     /locus_tag="ACFM5C_000661"
     CDS             8492..8677
                     /gene="rpmD"
                     /locus_tag="ACFM5C_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HFC6068409.1"
                     /translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLCRREHTVEVLDTP
                     ENRGMINKISYLLKVES"
     gene            8679..9113
                     /gene="rplO"
                     /locus_tag="ACFM5C_000662"
     CDS             8679..9113
                     /gene="rplO"
                     /locus_tag="ACFM5C_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFC6068410.1"
                     /translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
                     FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
                     STVSNVKVIASGEISKAVALKGIKVTKGARAAIETVGGKIEM"
     gene            9125..10435
                     /gene="secY"
                     /locus_tag="ACFM5C_000663"
     CDS             9125..10435
                     /gene="secY"
                     /locus_tag="ACFM5C_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFC6068411.1"
                     /translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
                     ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
                     KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
                     TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
                     GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
                     LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
                     AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
                     LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
     gene            10440..10658
                     /gene="infA"
                     /locus_tag="ACFM5C_000664"
     CDS             10440..10658
                     /gene="infA"
                     /locus_tag="ACFM5C_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFC6068412.1"
                     /translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
                     IRISPGDKVTVELTPYDLTRARIVFRAR"
     gene            10679..10792
                     /gene="rpmJ"
                     /locus_tag="ACFM5C_000665"
     CDS             10679..10792
                     /gene="rpmJ"
                     /locus_tag="ACFM5C_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFC6068413.1"
                     /translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
     gene            10858..11220
                     /gene="rpsM"
                     /locus_tag="ACFM5C_000666"
     CDS             10858..11220
                     /gene="rpsM"
                     /locus_tag="ACFM5C_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFC6068414.1"
                     /translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
                     AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
                     RTNARTRKGPRKAIAGKK"
     gene            11240..11635
                     /gene="rpsK"
                     /locus_tag="ACFM5C_000667"
     CDS             11240..11635
                     /gene="rpsK"
                     /locus_tag="ACFM5C_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFC6068415.1"
                     /translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
                     SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
                     NALGFKITSITDVTPLPHNGCRPPKKRRI"
     gene            11655..12275
                     /gene="rpsD"
                     /locus_tag="ACFM5C_000668"
     CDS             11655..12275
                     /gene="rpsD"
                     /locus_tag="ACFM5C_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFC6068416.1"
                     /translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
                     KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
                     YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
                     LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
     gene            12301..13287
                     /gene="rpoA"
                     /locus_tag="ACFM5C_000669"
     CDS             12301..13287
                     /gene="rpoA"
                     /locus_tag="ACFM5C_000669"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFC6068417.1"
                     /translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
                     RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
                     KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
                     RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
                     AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
                     IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
     gene            13311..13679
                     /gene="rplQ"
                     /locus_tag="ACFM5C_000670"
     CDS             13311..13679
                     /gene="rplQ"
                     /locus_tag="ACFM5C_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFC6068418.1"
                     /translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHETIVTTLPKAKEL
                     RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
                     RKGDNAPLALVELVDKPAAE"
     gene            13826..14539
                     /gene="minC"
                     /locus_tag="ACFM5C_000671"
     CDS             13826..14539
                     /gene="minC"
                     /locus_tag="ACFM5C_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA];
                     GO_process: GO:1901891 - regulation of cell septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HFC6068419.1"
                     /translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
                     SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
                     SHSENVKELGQVEVQNTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
                     IADGNMHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPDHLHKQ
                     PVQILLQDNRLVISAIGSE"
     gene            14568..15383
                     /gene="minD"
                     /locus_tag="ACFM5C_000672"
     CDS             14568..15383
                     /gene="minD"
                     /locus_tag="ACFM5C_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HFC6068420.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
                     EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
                     ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
                     LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
     gene            15387..15650
                     /gene="minE"
                     /locus_tag="ACFM5C_000673"
     CDS             15387..15650
                     /gene="minE"
                     /locus_tag="ACFM5C_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HFC6068421.1"
                     /translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
                     KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
     gene            15654..16574
                     /gene="oxyR"
                     /locus_tag="ACFM5C_000674"
     CDS             15654..16574
                     /gene="oxyR"
                     /locus_tag="ACFM5C_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator OxyR"
                     /protein_id="HFC6068422.1"
                     /translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
                     VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
                     PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
                     YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
                     GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
                     RRNFVRPKALSAMKAAIMQSQLHGVSFIRD"
BASE COUNT         4593 a         3151 c         4160 g         4839 t
ORIGIN      
        1 catcaaccat attccggttt gtcggagaaa gatgcatacg ctgtgatgac cggataccga
       61 ccctttaaaa gagtccgacc ctatgccgtc tgaaaattca aaacgcttca gacggcatat
      121 tgaagatatt tctgatattt ctgttgatat ttctttaact tgtcagatat aatgccgagc
      181 ttggtacatt tgtgccaagt ttaactttgt ctgaaagaca ggccaatcgc agcctgtccc
      241 tttactttaa aaggaaaata atcatgactt taggtctggt tggacgcaaa gttggtatga
      301 cccgcgtgtt cgacgaacag ggtgtttctg ttccggtaac cgttttggat atgtcagcca
      361 accgcgtcac acaagtaaaa tccaaagata ctgacggcta tactgccgtt caagttacct
      421 ttggtcagaa aaaagccaat cgtgtcaaca aagccgaagc cggacacttt gcaaaagcag
      481 gtgttgaagc cggtcgcggt ttgattgagt ttgctttgac tgaagaaaaa ttagctgaat
      541 tgaaagccgg tgacgaaatc accgtttcta tgtttgaagt tggtcaactg gtcgatgtaa
      601 ccggtacctc taaaggtaaa ggtttctccg gtacgatcaa acgtcataac ttcggcgccc
      661 agcgtacttc ccacggtaac tcccgttctc accgtgttcc aggctctatc ggtatggcgc
      721 aagacccggg tcgcgtgttc cccggtaaac gcatggccgg ccaatacggc aacaccaaag
      781 caactgttca aaaattggaa gttgtccgtg ttgacgcaga acgccaactg ctgttggtta
      841 agggtgctgt tccaggtgcg gtcaacagcg atgttgtagt tcgtcccagc gtgaaagtag
      901 gtgcgtaatg gaattgaaag taattgacgc taaaggacaa gtttcaggca gtctgtctgt
      961 ttctgatgct ttgttcgccc gcgaatacaa tgaagcgttg gttcatcagc tggtaaatgc
     1021 ctacttggca aacgcccgct ctggtaaccg tgctcaaaag acccgtgccg aagtaaaaca
     1081 ctcaaccaaa aaaccatggc gtcaaaaagg taccggtcgc gcccgttccg gtatgacttc
     1141 ttctccgctg tggcgtaaag gcggtcgcgc gttcccgaac aaacccgacg aaaacttcac
     1201 tcaaaaagta aaccgcaaaa tgtaccgtgc cggtatggcg actattctgt cccaattggc
     1261 tcgtgacgag cgtttgtttg cgattgaggc gttgactgcc gaaactccta aaaccaaggt
     1321 ttttgctgaa caagtgaaaa atctaggtct ggagcaagtg ttgtttgtaa ccaaacagct
     1381 cgacgagaat gtttacttgg cttcacgcaa cttgccaaac gtgttggttt tggaagctca
     1441 acaagttgat ccttatagct tgctgcgtta caaaaaagta atcatcacta aagatgcagt
     1501 tgcacaatta gaggagcaat gggtatgaat caacaacgtt tgactcaagt gattttggca
     1561 cctatcgttt ctgaaaaaag caacgtattg gctgaaaaac gcaaccaaat gacgtttaag
     1621 gttttggcaa atgcaaccaa acctgaaatc aaagctgctg ttgagctgct gtttggtgtt
     1681 caagttgctt ctgtaactac cgttacaact aaaggcaaaa ctaagcgttt tggtcgtact
     1741 ttgggccgcc gcagcgatgt taaaaaagct tatgtaagct tggctgccgg tcaagagttg
     1801 gatttggaag ccgctgctgc agctgcagat aaggaataaa caaaatggca atcgttaaaa
     1861 tgaagccgac ctctgcaggc cgtcgcggca tggttcgcgt ggtaacagaa ggtttgcaca
     1921 aaggtgcacc ttatgcgcct ttgcttgaaa agaaaaattc tactgccggc cgtaacaata
     1981 atggtcatat caccacccgt cacaaaggcg gcggtcataa acaccattac cgtgttgtag
     2041 actttaaacg taacaaagac ggcattcctg ccaaagtaga gcgtatcgaa tacgatccta
     2101 accgtactgc cttcatcgca ctgttgtgct atgcagacgg cgagcgtcgt tacatcatcg
     2161 ctcctcgcgg tattcaagtc ggtgccgtat tggtttccgg tgctgaagct gccatcaaag
     2221 taggcaacac cctgccgatc cgcaacattc ccgttggtac gactatccac tgtatcgaaa
     2281 tgaaacccgg taaaggtgct caaatcgcac gttctgccgg tgcttctgcg gtattgctgg
     2341 ctaaagaagg cgcgtacgct caagtccgcc tgcgctctgg cgaagtccgt aaaatcaacg
     2401 tagattgccg tgcaaccatc ggtgaagtcg gtaacgaaga gcaaagcctg aaaaaaatcg
     2461 gtaaagccgg tgccaatcgt tggcgcggta ttcgtccgac tgtacgtggt gttgtcatga
     2521 accctgtcga tcacccgcat ggtggtggtg aaggccgtac gggcgaggcc cgcgaaccgg
     2581 tcagcccatg gggtactcct gctaaaggct accgcactcg taataacaaa cgcacggata
     2641 acatgattgt tcgtcgccgt tactcaaata aaggttaatt tagtatggct cgttcattga
     2701 aaaaaggccc atatgtagac ctgcatttgc tgaaaaaagt agatgctgct cgcgcaagca
     2761 acgacaaacg cccgattaaa acctggtctc gtcgttctac cattctgcct gattttatcg
     2821 gtctgaccat tgctgtgcac aacggccgca cccatgtgcc tgtgtttatc agcgacaata
     2881 tggttggtca taaattaggc gaattctcat tgacccgtac ctttaaaggc cacttggccg
     2941 ataaaaaggc taaaaagaaa taaggtgaat catgagagta aatgcacaac ataaaaatgc
     3001 ccgtatctct gctcaaaagg ctcgtttggt agctgatttg attcgtggta aagacgttgc
     3061 ccaagctttg aatattttgg ctttcagtcc taaaaaaggt gccgagctga ttaaaaaagt
     3121 attggagtca gctattgcta atgccgagca caataacggt gcggacattg atgaactgaa
     3181 agtggtaact atctttgttg acaaaggccc aagcttgaaa cgttttcaag ctcgcgccaa
     3241 aggtcgcggt aaccgcatcg aaaaacaaac ttgtcatatc aatgtgacag tgggtaacta
     3301 aggaaaagct atgggacaaa agattaaccc tacaggcttt cgcctggcgg taactaaaga
     3361 ctgggcttca aaatggtttg ctaaaagcac cgacttttct actgttttga agcaggatat
     3421 cgatgttcgc aattatttgc gtcaaaaatt ggccaatgct tcggttggtc gagtggttat
     3481 tgaacgccct gcaaaatctg cacgcattac cattcactcc gctcgtccgg gtgtggttat
     3541 cggtaaaaaa ggtgaggata tcgaggtttt gaaacgtgac ttgcaagtct tgatgggtgt
     3601 acctgttcat gtaaatattg aagagattcg ccgtcctgag ttggatgctc aaattattgc
     3661 tgacggtatt gcccagcagt tggaaaagcg cgttcaattc cgtcgtgcta tgaaacgagc
     3721 aatgcaaaat gcaatgcgtt ctggtgctaa aggcattaag attatgactt caggccgtct
     3781 gaatggtgcg gatattgccc gtagtgaatg gtatcgtgaa ggtcgcgtgc cactgcatac
     3841 tttacgtgca aatgtagatt atgcaaccag cgaagcgcac accacatatg gtgtattggg
     3901 tctgaaagtt tgggtttata cggaaggcaa tattaaatct tccaaacctg aacatgagag
     3961 taaacaaaga aaggcaggta gacgtaatgc tgcagccaac tagactgaaa taccgtaagc
     4021 aacaaaaggg tcgcaatact ggcatcgcta ctcgcggtaa taaggtaagt ttcggtgagt
     4081 tcggcttgaa agccgtaggt cgtggtcgtt tgactgcccg tcaaatcgaa gctgctcgtc
     4141 gtgcaatgac ccgtcatatc aaacgtggtg gtcgtatttg gattcgtgta ttccctgata
     4201 aaccgattac tgaaaagcct attcaagttc gtatgggtgg cggtaaaggt aacgtggaat
     4261 attacattgc cgaaattaaa ccaggtaaag tgttgtatga aatggatggc gttccagagg
     4321 aactggctcg tgaagcattc gagttggctg ctgccaaatt gcctattcct acaacctttg
     4381 tagtaagaca ggtgggtcaa taatgaaagc aaatgaattg aaagacaaat ccgttgagca
     4441 gttgaatgca gatttgttgg acttgttgaa agctcagttt ggcttacgta tgcaaaacgc
     4501 taccggtcaa ttaggcaaac caagtgaatt gaaacgtgta cgtcgcgata ttgctcgtat
     4561 taaaaccgtt ttaactgaaa aaggtgctaa gtaatgagcg aaactaaaaa tgttcgtact
     4621 ttgcaaggca aagtagtaag cgacaaaatg gataaaaccg taacagtatt ggttgagcgt
     4681 aaagtaaaac atccgctgta tggtaagatt attcggttat ctactaaaat ccatgcccat
     4741 gatgaaaata atcaatatgg aattggtgat gtggttgtta tatcggaatc ccgtccattg
     4801 tcaaaaacta aatcttgggt tgtcagtgag ctggttgaga aagcacgttc tatttaagaa
     4861 ttaaagcaac gtgcttggaa tgggaaacga agtattgcag caaatttaat ttgcgtgtaa
     4921 acttcgtttc ctgtctttca gtttcttctg gaagtttctt cccttttcgg ggtccaagac
     4981 tggtttactt gaaccgcaag gtttcattta ataagcagcg gctttgctgt aagttatctg
     5041 aaagtggtaa attaagttgg ttaatttaaa ggtaataaca tgattcaaat gcagaccatc
     5101 ttagatgtgg ctgataactc tggtgcgcgt cgcgtaatgt gtatcaaggt attgggcgga
     5161 tctaagcgtc gctacgcttc tgttggcgat attattaaag tggcagttaa agatgcggct
     5221 ccgcgtggcc gtgtcaaaaa aggcgatgta tataatgcgg tagttgttcg tactgctaag
     5281 ggtgtacgtc gtcctgatgg tgcgttaatt aaattcgata acaatgccgc cgtgttactg
     5341 aataataaac ttgaaccttt gggtactcgt atctttggtc cggtaacccg tgaattgcgt
     5401 actgagcgat ttatgaaaat cgtttcattg gcacctgaag tattataagg aatggcacga
     5461 tgaataaaat cattaaaggc gatagggttg tagtaattgc tggtaaggat aaaggtaagc
     5521 agggtcaagt agttcgagtg ttgggtgata aagttgttgt tgagggcgtt aatgttgtaa
     5581 aacgccatca aaaacctaat ccaatgcgtg gcattgaggg cggtattatt actaaagaaa
     5641 tgcctttgga tatttctaat atcgcaatcc tgaatccgga aactaataaa gcggaccgtg
     5701 ttggtattaa gctgattgaa aatgaaggca aagttaaacg cgttcgtttc ttcaaatcaa
     5761 atggctctat cattggggca taaggagata acatggctcg gttgagagag ttttataaag
     5821 agacagttgt tcctgaattg gttaaacaat ttggttacaa atcagtaatg gaagtcccgc
     5881 gtattgaaaa aattaccttg aatatgggtg tgggtgaggc tgttgctgat aaaaaagtta
     5941 tggaacatgc tgtttccgat ttagagaaaa ttgccggtca aaaaccggtt gttactgttg
     6001 cccgtaaatc tatcgcaggt tttaaaatcc gtgataacta tccggttggt tgcaaagtaa
     6061 cattgcgtcg tgatcaaatg tttgaattct tggatcgttt gattactatt gcattacctc
     6121 gcgtacgtga cttccgtggt gtgagcggta aatcatttga tggccgtggc aattacaata
     6181 tgggtgttcg tgagcaaatt atttttccgg aaattgaata cgataaaatt gatgctttgc
     6241 gtggtttgaa tattactatt actactacag caaaaaccga tgaggaagcg aaagctttat
     6301 tgtcattgtt taaatttccg ttcaaaggat aatcatggct aagaaagcac ttattaatcg
     6361 tgatctgaaa cgtcaagctt tggctaaaaa atatgcggct aaacgcgcgg caattaaagc
     6421 ggtaatcaat gattcgaatg caactgagga agagcgtttt gaggctcgtt tgaggtttca
     6481 atccattcct cgtaatgcgg cacctgtgcg tcaacgtcgt cgttgtgctt tgacaggtcg
     6541 ccctcgtggt actttccgta aatttggttt gggtcgtatt aaaatccgtg aaatcgccat
     6601 gcgtggcgaa attccgggtg ttgttaaagc cagctggtaa taggagtaat taagaatgag
     6661 tatgcatgat cctatttccg atatgttgac tcgtatccgc aatgcgcaac gtgctaataa
     6721 agcagcggtt gcaatgcctt cttcaaaatt aaagtgtgct attgcaaagg tattgaaaga
     6781 agaaggatat attgaggact tcgcagtttc atctgacgta aagtctatat tggaaattca
     6841 attaaaatac tatgcaggtc gtcctgtaat tgaacaaatc aagcgtgtat ctcgccctgg
     6901 tttgcgtatt tataaagcgt ctagtgagat tccaagtgtt atgaatggct tgggtattgc
     6961 tattgttagt acttctaaag gtgtaatgac tgatcgtaaa gcacgttctc aaggtgttgg
     7021 tggtgagttg ttatgcattg tagcctagtg gaggaaaaga aatgtcacgt gtcgcaaaaa
     7081 acccagtgac tgttcccgct ggtgtagaag taaaatttgg aacagaggca ttagttatta
     7141 agggtaagaa cggtgaattg tcttttcctt tgcattctga tgtagccatt gaatttaatg
     7201 atggcaaatt gacttttgtt gcgaataaca gcagtaaaca agcaaatgca atgtctggta
     7261 ctgctcgcgc attagtcagc aatatggtta aaggtgtttc agaaggtttt gagaaaagat
     7321 tgcaattgat aggtgtgggt tatcgtgctc aagcacaagg taaaatcttg aatctgtctt
     7381 tgggtttttc tcatccgatc gtatatgaaa tgcctgaagg tgtctccgtt caaactccta
     7441 gccaaacaga gattgtttta accggctcgg ataaacaagt tgttggtcaa gttgctgctg
     7501 agattcgtac gttccgtgct cctgagcctt ataaaggtaa aggtgttcgc tatgtaggcg
     7561 aagtagtggt aatgaaagaa gccaagaaaa aataattgag gttcactaat ggataaacat
     7621 acaacccgac tccgtcgtgc acgcaaaacc cgtgctcgta ttgcggactt gaaaatggta
     7681 agattatgtg tgttccgaag caataatcat atttatgctc aagtaattag tgctgaaggt
     7741 gataaagtat tggctcaagc ctctacattg gaagctgagg tgcgcggtag tctgaaatct
     7801 ggaagcaatg ttgaagcagc tgcaatagtt ggtaaacgta ttgctgagaa ggctaaagca
     7861 gcaggtgtag aaaaggttgc ttttgatcgt tcaggtttcc aatatcacgg tcgtgtgaag
     7921 gctttggctg aagctgctcg tgaaaatggt ttaagcttct aaatatttgg agactttcag
     7981 atggcaaaac atgaaattga agaacgcggt gacggtctga ttgaaaagat ggtcgcagtt
     8041 aaccgtgtaa ccaaagtagt taaaggtggt cgcattatgg ctttctctgc gctaactgtt
     8101 gttggtgatg gagatggtcg tattggtatg ggtaaaggta agtcaaaaga agtgcctgtt
     8161 gcagtccaaa aggcgatgga tcaagcacga cgctctatga ttaaggtacc attaaaaaat
     8221 ggtacgattc atcatgaggt tattggtcga catggtgcta ctaaagtatt tatgcagcct
     8281 gctaaagagg gtagtggcgt aaaagccggt ggacctatgc gtttggtttt tgatgctatg
     8341 ggcattcata atatctccgc caaagtgcac ggatctacta acccatataa tatcgtacgt
     8401 gcaacattag atggtttgtc taagttgcat actcctgctg atatcgcagc caaacgtggc
     8461 ttgacagtgg aagacatttt gggagttaac catggctgaa caaaaaaaga ttagggttac
     8521 attggttaaa agcctgattg gtacaattga atctcatcgt gcatgtgcac gcggtttagg
     8581 tttgtgtcgt cgcgagcata cggtagaggt tttagatacc cctgaaaacc gtggtatgat
     8641 taataaaatc agctacttgt tgaaagtgga gtcttgatat gtttttgaat acaattcaac
     8701 ctgctgttgg tgctacgcat gctggtcgtc gtgttggacg cggtattggt agtggtcttg
     8761 gcaaaacggg tggtcgtggt cataaaggtc aaaagagccg gtctggtggg tttcataagg
     8821 tgggtttcga gggtggtcaa atgcccttgc aacgacgcct ccctaaaaga ggttttaaat
     8881 ctttaacagc atcagctaat gcacagcttc gtttaagtga actggaatca attgctgtta
     8941 atgagattga tattttggtc ttaaagcaag cgggtctgat tgcatctaca gtctctaatg
     9001 ttaaagttat tgcttctggt gaaatttcta aggcagttgc tttgaagggt attaaagtta
     9061 ccaaaggtgc gagagctgct atcgagactg ttggtggtaa gattgaaatg taaggtttaa
     9121 tattgtggct aatcaacaaa cgtcatcagg ttcatccaaa tttggagatc ttaagaaacg
     9181 tcttttgttt ctatttggag cattgattgt ttttcgaatt ggtgcccata tacccgtacc
     9241 tggagttgat gctgttgctt tagctaaatt atacgaaagc gctggaaacg gcatcctggg
     9301 aatattgaat atgttttccg gtgggtcgtt agagcgcttt agtatatttg caataggaat
     9361 tatgccatat atttcagctt ctattattgt acagctcgct tctgaaattt tgccatcatt
     9421 gaaggcttta aaaaaagaag gggaggctgg tagaaaggta attacgaaat atactaggta
     9481 tggtactgtt ttgttagcaa ttcttcaaag tctaggtgtt gcatctttcg tatttcagca
     9541 aggaattgtt gtaacaagtt catttgagtt tcatgtttcc acggtagttt ctttggtaac
     9601 gggaaccatg tttcttatgt ggcttgggga gcaaattact gaaaggggta tcgggaacgg
     9661 tatttcttta atcattacgg caggtattgc ttcaggtatt ccttcgggta ttgcaaagct
     9721 ggttacactg acgaaccaag gttctatgag catgcttacg gcgttgttta ttgtatttgg
     9781 tgccttatta ttaatttatt tggttgtata ctttgaaagt gcacagcgga agattcctat
     9841 tcattatgca aaacgccagt ttaatggtag ggcgggtagt caaaatacgc atatgccttt
     9901 caagttgaat atggctggtg ttattccccc aatttttgct tccagtatta ttctatttcc
     9961 atctactctt ttaggttggt ttggttcggc tgatacaaat agtgttttgc acaaaatagc
    10021 tggattgtta caacacggtc aattgctgta tatggcttta tttgcagcga cagttatttt
    10081 cttttgttat ttttatacgg ctttggtttt tagccctaaa gaaatggcag agaatttaaa
    10141 aaagagtggt gcttttgttc ctgggattag acctggtgag cagacctcta ggtatttaga
    10201 aaaagttgta ttacgtttga cattgtttgg agctctttat attacaacta tttgtttaat
    10261 tccagagttc ttaactacgg ttttaaatgt acctttttat ttgggtggca cgtctttgtt
    10321 gattctagtt gttgtaacga tggattttag tacacaaata aattcgtata ggcttactca
    10381 acagtatgat aagttaatga ctcgttcaga aatgaaatca ttttctcgga aatagaatta
    10441 tggcgaaaga agatactatc caaatgcaag gtgaaattct tgaaacttta cctaatgcaa
    10501 catttaaagt aaaacttgag aatgaccata ttgtattggg tcatatttct gggaagatgc
    10561 ggatgcatta cattcgtatt tctccgggag ataaggtcac agtagagctg acaccttatg
    10621 atctaactag ggctcgaatc gttttcagag caagataaac caataaaagg aaaataaaat
    10681 gcgtgtacaa ccatctgtta agaaaatttg ccgaaattgc aagattattc gtcgaaatcg
    10741 tgtagttcgt gtaatttgta ctgatctccg tcacaaacag cgtcaaggtt aatggaatat
    10801 ttcttttaat gtgattctgt gatatagtga cacactttgc cctaaaaagg aaaaaatatg
    10861 gctcgtattg caggggtaaa tatccctaat aacgcacaca tcgtaattgg tcttcaggct
    10921 atttacggta ttggtgctac tcgtgctaaa ttgatttgtg aggctgcaaa tattgcgcct
    10981 gatactaaag caaaagattt ggacgagact caattagatg ctttgcgtga ccaagttgcc
    11041 aagtatgaag tagaaggtga tttgcgtcgt gaggtaacta tgagtatcaa gcgattgatg
    11101 gacatgggct gctatcgtgg cttccgtcat cgtcgcggct taccatgccg cggtcaacgc
    11161 actcgtacaa atgcgcgtac ccgcaaaggt ccgcgtaaag cgattgctgg taagaaataa
    11221 attttaagga attttattaa tggctaaagc aaacacagct tcacgtgtac gtaaaaaagt
    11281 acgtaaaacc gtgagtgagg gtattgtgca cgttcatgca tctttcaaca ataccatcat
    11341 tacaatcact gaccgtcaag gcaatgcgtt gtcttgggct acctctggcg gcgctggttt
    11401 taaaggttct cgtaaaagta caccatttgc agcacaagtt gcagcagaag cagctggtaa
    11461 agttgcccaa gagtatggcg ttaaaaattt agaggttcgt attaaaggtc caggtccagg
    11521 tcgtgaatcc tctgtacgtg ctttgaatgc tcttggtttc aagattacca gcattactga
    11581 cgttaccccg ttgcctcata acggttgccg tccgcctaaa aaacgtcgta tttaatattg
    11641 gagtgatttg aaacatggca cgttatattg gccctaaatg taagttggca cgtcgcgaag
    11701 gtacggattt gtttttgaag agtgcgcgcc gctctttgga ttccaaatgt aaaattgatt
    11761 ccgctcccgg tcagcatggt gcaaaaaaac cgcgtttgtc agactatggt ttgcagttgc
    11821 gtgaaaaaca aaaaatccgc cgtatttatg gcgtattaga acgtcagttc cgtcgttatt
    11881 tcgcagaagc tgatcgtcgt aaaggttcta ccggcgagtt gctgttgcag ttgctggaat
    11941 ctcgtttgga taatgtcgtt tatcgtatgg gtttcggttc tacccgagct gaagcaagac
    12001 agcttgtttc tcataaggcg atagttgtga atggacaagt tgtcaatatt ccttctttcc
    12061 aagtgaaagc tggtgatgtt gtctcagttc gtgaaaaagc caaaaaacag gtacgtattc
    12121 aagaagcatt gggtttggca actcaaatcg gcttgccggg ttgggtttct gtagatgcgg
    12181 ataaacttga gggtgtgttc aaaaacatgc cggatcgctc ggaattgacc ggtgatatta
    12241 atgaacagct ggtggtagag ttctactcta aataatgcta gctcagtgag ggacagttaa
    12301 atgcagaata gcacaaccga atttttgaaa cctcgtcaaa ttgatgtaaa tactttttct
    12361 gcaactcgtg caaaagtatc tatgcagcca tttgaacgtg gtttcggtca taccttaggt
    12421 aatgctttgc gccgtatctt actgtcatcc atgaatggtt ttgctcctac tgaagtagct
    12481 attgccggtg tattacacga atattctact gttgatggta ttcaggaaga tgttgttgac
    12541 attttgctga atattaaagg tattgtgttt aaactccatg gtcgtagcca agttcaactt
    12601 gtgttgaaga aatcaggttc aggtgtcgta tctgccggtg atattgagtt gccgcatgat
    12661 gtagaaattc tgaatcctgg tcatgtcatt tgtcatttgg ctgataacgg tcaaattgag
    12721 atggaaatta aagtagagca aggtcgtggt tatcaatctg tttcaggtcg tcaggtagtt
    12781 cgtgatgaga accgtcagat tggtgcaatc cagttggatg cgagcttttc gcccatcagc
    12841 cgtgttagct ttgaggttga acctgcacgt gtagagcagc ggacggatct tgataagttg
    12901 gttttggata tcgaaaccga cggttctatt gatcctgagg aagctgtacg cagtgcggca
    12961 cgtattttga ttgatcagat gtctattttt gctgatttgc agggtactcc tgtggaggag
    13021 gttgaagaaa aagcacctcc tatcgaccct gttcttttgc gtccggtgga tgatctggaa
    13081 ttgacagtac gttcagctaa ttgtttgaaa gctgaggata tttattatat tggcgatttg
    13141 attcaacgca ctgaaaccga gcttcttaaa acgccgaatt tgggacgtaa atctttgaat
    13201 gagattaagg aagtattggc atctaaaggt ttgacactgg gttctaagtt ggaagcatgg
    13261 ccacctgtag gcttggaaaa gccttaatga agaattaaag gataattgat atgcgtcatc
    13321 gtaatggcaa tcgcaaatta aaccgtacca gcagtcatcg tgctgcaatg ctgcgtaata
    13381 tggcgaattc attattgact cacgaaacta ttgtaacaac tctgcctaag gccaaggaat
    13441 tgcgccgtgt agtagagccg ttgattacat tgggtaaaaa gccgtcattg gcaaaccgcc
    13501 gtttggcatt tgaccgtact cgcgaccgtg atgttgtagt aaaactgttt ggcgatttgg
    13561 gtcctcgttt tactgctcgt aacggtggtt atgttcgggt gttgaaatac ggattccgta
    13621 aaggtgataa tgcacctctg gcactggttg aattggttga caaaccggct gctgagtaat
    13681 tttagtcata taacgccatc tgccgaaaag caggtggcgt tatttttgca atatctgata
    13741 ggtaataggg tattggctat catgtttaaa atattaattg aatagctaag gtttgcgcgg
    13801 taaacttaca tcattaaaaa attctatgat ggtttatata atgaatgctt tcgatataaa
    13861 gtcgacaaag atggacgtat tgtctatatc tttgcatacg tcagacttgt ttgatttgga
    13921 agatgtgctg gtcaaattgg gcaagaagtt tcaagagtct ggtgttgttc catttgtgct
    13981 ggatgttcaa gagtttgatt atcccgagtc tttggatctt gctgcattgg tttcgttgtt
    14041 ttcaaggcat ggtatgcaaa ttttgggtct gaagcattct aatgaacgtt gggctgctgc
    14101 ggctatgaag tatcatttgc tgttttgtct gtctcattcg gaaaatgtta aagaactggg
    14161 tcaggttgag gtgcagaaca cggaggatgg tcagaaagca aggaaaacag tattgattac
    14221 atcccctgtc cgtaccggtc agcaggttta tgccgaagat ggcgatttga ttgttacggg
    14281 ggcggtcagc cagggggcgg aattgattgc agatggcaat atgcatattt atgcgccgat
    14341 gagagggcgt gctttggccg gtgccaaagg cgatacttct gcccgcatat ttatccactc
    14401 catgcaggca gaactggttt ctgtggcggg tatttaccgt aattttgaac aggatttgcc
    14461 ggaccatctg cacaagcagc cggtacagat attgttgcag gataaccgat tggttatcag
    14521 tgcaattggc tcagaataat tgtttgatat tttaaaaagg aaatattgtg gcaaaaatta
    14581 ttgtagtaac ttcaggtaag ggcggtgtcg gtaaaacgac taccagtgcc agtattgcga
    14641 caggtttggc attacgcgga tataaaactg cggtaattga ttttgatgtg ggtttgcgta
    14701 acctcgacct cattatgggt tgcgagcgtc gtgtcgttta tgacctgatc aatgtcattc
    14761 agggggaggc gacgctcaac caggctttga ttaaagataa aaattgtgaa aacctgttta
    14821 ttttgccggc ttcccagact cgggataaag acgctttgac acgcgaggga gtagaaaaag
    14881 tgatgcagga gctgtccggc aagaaaatgg gctttgagta tattatttgc gactctcctg
    14941 ccggtattga gcagggtgca ttgatggcgt tgtattttgc tgatgaagcc attgtaacga
    15001 ccaatcctga ggtttccagt gtgcgtgact ccgacaggat tttgggaatt ttgcaaagca
    15061 aatcccataa ggcagagcaa ggcggttcgg ttaaagaaca tctgttgatt acgcgttatt
    15121 ctcccgaacg tgtggcaaaa ggcgaaatgc tgtctgtaca ggatatttgc gatattctgc
    15181 atatcccttt gctgggtgtg attcctgaat cccaaaacgt cttgcaggca tccaattccg
    15241 gagaaccggt catccatcag gacagcgtgg cggcttccga ggcatataag gacgttattg
    15301 cccgtctttt gggcgagaac cgtgaaatgc gcttcttgga agctgagaaa aaaagcttct
    15361 tcaaacgtct gtttggagga taaggtatgt cattaatcga atttttattc ggcagaaagc
    15421 agaaaacggc aaccgttgcc cgcgaccgcc ttcaaatcat cattgcccaa gagcgcgccc
    15481 aagaaggtca ggctccggat tacctgccga ctttacgtaa agagttgatg gaagtcctgt
    15541 ccaaatatgt gaacgtttca ttagacaata tccgtatttc ccaggaaaaa caggatggta
    15601 tggatgtgct tgagttgaac attactttgc cggaacagaa aaaggtatag gacatgacct
    15661 taaccgaatt gcggtacatc gtcgcagtcg cccaagaacg tcatttcggc agggcggcgc
    15721 ggcgttgttt tgtcagtcag cccactttgt ctattgccat taagaaattg gaagaagagc
    15781 ttgccgtctc tttgtttgac cggagcagca acgatattat tacgaccgag gcgggggaac
    15841 gtatcgttgc acaggcgcgt aaggtattgg aagaggcgga gcttatcagg catttggcaa
    15901 atgaagaaca aaacgagctg gagggtgcgt tcaaactcgg gctgattttt acggttgcgc
    15961 cgtacctgct gccgaaactg attgtctcgt tgcgccgtac tgcaccgaaa atgcctttga
    16021 tgttggaaga gaattacacg catactttga ccgagtcgct caaacgcggg gacgttgatg
    16081 cgattatcgt tgccgaaccg tttcaagagc cgggcattgt taccgaaccc ttgtatgacg
    16141 aaccgttttt cgtgattgtc ccgaaagggc attcatttga ggaactggat gccgtttcgc
    16201 cccggatgct gggtgaggag caggttttgc tgctgacgga aggcaactgt atgcgggatc
    16261 aggtactctc aagctgttcc gaattggcgg cgaaacaacg catacagggg ttgaccaata
    16321 cattgcaggg cagctcgatc aatacaatcc gccatatggt cgccagcggt ttggcaatca
    16381 gcgtgttacc ggcaaccgcg ctgaccgaaa acgatcatat gctgttcagc attattccgt
    16441 ttgaaggtac gccgccaagc cggcgggtcg tattggcgta ccgccgcaat tttgtccgtc
    16501 cgaaggcgtt gtcggcgatg aaggcggcga ttatgcagtc gcagcttcac ggggtaagtt
    16561 ttatccgcga ctaggcgcag gcattgtttt caaaacgcca tttccctgag ccgacaacac
    16621 ggtatgccaa gatattgccg tcatcatcga ttttgagtat agcatcgcca cggaaactgc
    16681 cgtcctgaag atattcgact tttgcatcac tgtgaatgtt ttcatcagtg ccgatgcaat
    16741 gcc
//
LOCUS       DAXHNP010000027        16543 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.027, whole genome shotgun sequence.
ACCESSION   DAXHNP010000027 DAXHNP010000000
VERSION     DAXHNP010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16543
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.027"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..328
                     /locus_tag="ACFM5C_000675"
     CDS             <1..328
                     /locus_tag="ACFM5C_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6068423.1"
                     /translation="TEEGIAQTVVKGKTTRAEVEARFGKRNPFGCYAYHEVSLPIYNF
                     LPTNFIYMKSERRHWEWCVDYDWEGIVRDYRFTHKVEKDERSVIRDAVGVIRKEAGKS
                     LSQPEK"
     gene            392..1675
                     /gene="hemL"
                     /locus_tag="ACFM5C_000676"
     CDS             392..1675
                     /gene="hemL"
                     /locus_tag="ACFM5C_000676"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFC6068424.1"
                     /translation="MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYV
                     WDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAKI
                     MPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTF
                     GNPSSAGVPADFTKHTLVLEYNNIAQLEEAFAQSGNDIACVILESFVGNMNLVRPTEA
                     FVKALRELTEKHGAVLIYDEVMTGFRVALGGAQSLHGIMPDLTTMGKVIGGGMPLAAF
                     GGRKDIMECISPLGGVYQAGTLSGNPIAVAAGLKTLEIIRREGFYENLTARTEQLVQG
                     FQTAADAAGIEFAADSVGGMFGLYFAAHAPRNYADMARSNIDAFKRFFHGMLDRGIAF
                     GPSAYEAGFVSAAHTPELIDETVAVAVEVFKAMAA"
     gene            complement(1891..2163)
                     /locus_tag="ACFM5C_000677"
     CDS             complement(1891..2163)
                     /locus_tag="ACFM5C_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taxon MazF"
                     /protein_id="HFC6068425.1"
                     /translation="MPSEAQILHFRRHFYSRLKSKIYTPVIPAQAGIRKVGLVGHEVV
                     LKMKRYRKSDELKEKYSDIDETFEFIKGFIYVIALAFTAYVAIRFF"
     gene            complement(2174..2737)
                     /gene="orn"
                     /locus_tag="ACFM5C_000678"
     CDS             complement(2174..2737)
                     /gene="orn"
                     /locus_tag="ACFM5C_000678"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HFC6068426.1"
                     /translation="MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEV
                     YAVHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATP
                     MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
                     DDILESIEEMRHYREHFLISAPRAEAQ"
     gene            complement(2755..3642)
                     /gene="prmA"
                     /locus_tag="ACFM5C_000679"
     CDS             complement(2755..3642)
                     /gene="prmA"
                     /locus_tag="ACFM5C_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFC6068427.1"
                     /translation="MPYQQITVNVNDAVAERLADALMEHGALSAAIEDAYAGTQNEQA
                     IFGEPGMPAEQIWQQSKVIALFGEHDEAAAIIQTAAQECGLKDLAYTGETLEDQDWVR
                     LTQAQFDPIQISERLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQ
                     LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAAQNNVDAQFFLP
                     DGLPQGQFDVVVANILANPLRMLGEMLAARTKQGGRIVLSGLLDEQAEELGGIYSQWF
                     DLDPAETEEGWARLSGVKR"
     gene            complement(3760..5121)
                     /gene="accC"
                     /locus_tag="ACFM5C_000680"
     CDS             complement(3760..5121)
                     /gene="accC"
                     /locus_tag="ACFM5C_000680"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFC6068428.1"
                     /translation="MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKL
                     ADESVCIGPAASAQSYLNVPAIIAAAEVSCADAVHPGYGFLAENADFAEQVEQSGFTF
                     IGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDGALPDDGEEILKIADKVGYPVIIKA
                     SGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADE
                     HGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIGYRGAGTFE
                     FLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRIAAGLPLQYKQKDIQVEGHA
                     FECRINAEDPYNFIPSPGPIESCHLPGGFGIRVDSHIYQGYRIPPYYDSLIGKICVHG
                     KTREQAMAKMRVALAELAVTGIKTNTPLHRDLFADAGFQKGGVSIHYLEHWLEDRKAK
                     QDK"
     gene            complement(5235..5690)
                     /gene="accB"
                     /locus_tag="ACFM5C_000681"
     CDS             complement(5235..5690)
                     /gene="accB"
                     /locus_tag="ACFM5C_000681"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFC6068429.1"
                     /translation="MDLRKLKKLIDLVEESGIAEIEVTEGEEKVRITRTIAAAPVYAA
                     PVPAAAPAVTPAAAPVAASAPAAAPAARDLSDAQKSPMVGTFYRAPGPNAAPFVEVGQ
                     QVKAGDTLCIIEAMKLMNEIEAEKSGTVKEILVENGTPVEFGEPLFIIG"
     gene            complement(5672..5929)
                     /locus_tag="ACFM5C_000682"
     CDS             complement(5672..5929)
                     /locus_tag="ACFM5C_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HFC6068430.1"
                     /translation="MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTV
                     SEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN"
     gene            6046..7086
                     /gene="queA"
                     /locus_tag="ACFM5C_000683"
     CDS             6046..7086
                     /gene="queA"
                     /locus_tag="ACFM5C_000683"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFC6068431.1"
                     /translation="MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGD
                     LPDYVEAGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKP
                     GMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDS
                     RYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIE
                     EHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTD
                     IFITPGYRFNVVDRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGD
                     AMVLGRNEGVVR"
     gene            complement(7456..8034)
                     /locus_tag="ACFM5C_000684"
     CDS             complement(7456..8034)
                     /locus_tag="ACFM5C_000684"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6068432.1"
                     /translation="MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVID
                     AGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVN
                     PTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMT
                     RLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            8273..9172
                     /gene="crgA"
                     /locus_tag="ACFM5C_000685"
     CDS             8273..9172
                     /gene="crgA"
                     /locus_tag="ACFM5C_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151940473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator CrgA"
                     /protein_id="HFC6068433.1"
                     /translation="MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEK
                     LGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMP
                     MVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLF
                     DSRFRVIASPEYLAKHGTPQSAEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHF
                     TASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDK
                     AVNLRLRVFLDFLVEELGNNLCG"
     gene            complement(9399..12614)
                     /gene="carB"
                     /locus_tag="ACFM5C_000686"
     CDS             complement(9399..12614)
                     /gene="carB"
                     /locus_tag="ACFM5C_000686"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFC6068434.1"
                     /translation="MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL
                     ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM
                     EVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDE
                     LRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQ
                     ESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTPEEIHEI
                     CAIDPWFLAQIEDLVKEEKSVSDGILSDLDFAALRRLKRKGFSDKRIAQLLGVKEKEV
                     REHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLR
                     QPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSE
                     DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEE
                     IQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLA
                     KVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGV
                     GASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTA
                     QYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQ
                     QRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRS"
     gene            complement(12643..13284)
                     /locus_tag="ACFM5C_000687"
     CDS             complement(12643..13284)
                     /locus_tag="ACFM5C_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6037 family protein"
                     /protein_id="HFC6068435.1"
                     /translation="MSIPINFNNLKYLLNDMRNKNRIIEAFPFNYNQRQYAVILTRYK
                     PDEPRPDDYAQAKLEFFNLNSENSIFAYADFYEVHFKSATDFINFFKINVQAGAAKIR
                     EIFQSFSNLFADFIPTQTKKDLDIIYKKIVATRLEPNSPNTIYCYDVRRNGKDKAGKP
                     NRRSVENSEKAKILRPELYEKFKADSNYSFFFSDNPSDEKTDAEIIREVTNRQ"
     gene            13446..13844
                     /locus_tag="ACFM5C_000688"
     CDS             13446..13844
                     /locus_tag="ACFM5C_000688"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068436.1"
                     /translation="MRYVCTRSPFSLQPQPTACVPCGTLSADEFKGRLKKRSQRLFHL
                     PCDKGCLKHSRCRCFGHSFSDDLQRLNLLQPTPSPVGEGWGEGILRISATFPNTLTAK
                     TQALWLVALSLTLSHGREDWAVVGAKVSVN"
     gene            complement(13952..14341)
                     /locus_tag="ACFM5C_000689"
     CDS             complement(13952..14341)
                     /locus_tag="ACFM5C_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HFC6068437.1"
                     /translation="MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNG
                     YKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWN
                     HEILQQTNDVLTEILLVLQELEKQAAR"
     gene            complement(14915..15040)
                     /locus_tag="ACFM5C_000690"
                     /pseudo
     CDS             complement(14915..15040)
                     /locus_tag="ACFM5C_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            complement(15086..16219)
                     /gene="carA"
                     /locus_tag="ACFM5C_000691"
     CDS             complement(15086..16219)
                     /gene="carA"
                     /locus_tag="ACFM5C_000691"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFC6068438.1"
                     /translation="MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILT
                     DPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYL
                     VRNQTVAIADIDTRRLTTLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAK
                     EVSCTETYEWTEGEWALGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPA
                     QTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAI
                     GAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTL
                     QGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA"
BASE COUNT         3573 a         4215 c         4586 g         4169 t
ORIGIN      
        1 gacggaagag ggaatcgcac aaacggttgt taaaggcaaa acgactcggg cggaggtaga
       61 ggcacgtttc gggaagcgca accctttcgg ttgttatgcc tatcatgaag tcagcctgcc
      121 gatttataat tttttgccga ccaatttcat ttatatgaaa tcagaacgcc ggcattggga
      181 gtggtgtgtg gattacgact gggaaggaat tgtccgggac taccgcttta cacataaagt
      241 ggaaaaagac gagcgttccg tcatccggga tgcggttggc gtcatccgca aagaagcagg
      301 caaatccttg tcgcaacctg aaaaatgata aaatgggact ttctgcttct aagcccgaaa
      361 cctgccgttc agacggcatt tgaggataaa tatgaaccgt aacgaaattt tattcgaccg
      421 cgccaaagcc atcatccccg gcggcgtgaa ttcccccgtc cgcgcattcg gcagcgtcgg
      481 cggcgtgccg cgcttcatca aaaaagccga aggcgcgtat gtttgggacg aaaacggcac
      541 gcgttatacc gactatgtcg gctcttgggg gcctgcgatt gtcggacacg cgcaccccga
      601 agtcgtcgaa gccgtgcgcg aagccgcgtt gggcggtttg tcgttcggcg cgcccaccga
      661 gggcgaaatc gccattgccg aacaaatcgc caaaatcatg ccgtccgtcg aacggctgcg
      721 cctcgtcagc tccggtaccg aagcgacgat gaccgccatc cgtttggcac gcggttttac
      781 cggtcgcgac aaaatcatca agtttgaagg ctgctaccac gggcattccg acagcctgct
      841 ggtgaaagcc ggcagcggcc tgctgacgtt cggtaatccc tcttccgccg gtgtgcctgc
      901 cgactttacc aaacacactt tagtccttga gtacaacaac atcgcccaat tggaagaagc
      961 ctttgctcaa agcggcaatg acattgcctg tgtgattttg gagtcttttg tcggcaatat
     1021 gaaccttgtc cgcccgaccg aagccttcgt caaagccctg cgcgaattga ccgaaaaaca
     1081 cggcgcggtg ttgatttacg acgaagtgat gaccggtttc cgcgtcgcgc tcggcggcgc
     1141 acaatcgctg cacggcatca tgcccgacct gaccacgatg ggcaaagtca tcggcggcgg
     1201 tatgccgctt gccgcgttcg gcgggcgcaa agacattatg gaatgtattt ccccactggg
     1261 cggcgtgtat caggcaggta cattatcagg caacccgatt gccgtcgccg ccggtttgaa
     1321 aacgctggaa atcatccgcc gcgaagggtt ttatgaaaac ctgacggcgc gtaccgaaca
     1381 gttggttcaa ggttttcaga cggcagcgga tgcggcgggc atcgagtttg ccgccgacag
     1441 cgtgggcggt atgttcggtc tgtatttcgc cgcacacgcg ccgcgaaact atgccgatat
     1501 ggcgcgttcc aatattgacg ctttcaaacg cttcttccac ggtatgctcg accgcggcat
     1561 tgccttcggc ccgtccgctt atgaagcagg tttcgtttct gccgcgcata cgcccgagct
     1621 gattgacgaa acggttgcgg ttgcggttga agtgttcaag gcgatggctg catgatgttt
     1681 tgacggacag agtttctctg ttcgatttgt ttggcagatt gaagtaagaa tgcacaccgc
     1741 cgtcattccc gcgcaggcgg gaatccagac ctttcagttt ctgtaatgat tgaaaataac
     1801 gggccgaaat cagccgcgcc cggcaggaag ccgccgccac ctgaaacaat gccgtctgaa
     1861 gccttcagac ggcattttat cggaagcgca tcagaaaaaa cggatagcga catatgcggt
     1921 aaaagcaagg gcaattacat agataaaccc ctttataaat tcaaaagtct catctatatc
     1981 gctatatttt tctttcagtt cgtcagattt tcgataacgt ttcattttca agaccacttc
     2041 atgaccaaca agcccgacct tccggattcc cgcctgcgcg ggaatgacgg gcgtgtatat
     2101 ttttgatttc aatctgctgt aaaaatgccg tctgaaatgc aggatttgcg cttcagacgg
     2161 cattttttgt ttcttattgc gcttcggctc tcggggcgga aatcagaaag tgttcgcggt
     2221 agtggcgcat ttcttcgatg ctctccaaaa tgtcgtccaa tgccttgtgc gaaccgcgtt
     2281 tgacgacgct tttggcaacg ggcggattcc agcgtttggc aagctctttc agtgtggaaa
     2341 cgtcaaggtt gcggtagtgg aagtagtttt ccagtttcgg catatatttg accataaaac
     2401 gccggtcttg gtggatggaa ttgccgcaca tcggcgtggc gcgtccgggt acccattccg
     2461 acataaagtc cagcagtttc tgttcgactt cggcttcggt atgcgacgat tcgcgcacgc
     2521 gctgcgtcag ccccgtcctg ccgtgtgtgg cggtgttcca ctcgtccata ttgtcgagca
     2581 gctcgtcgct ttggtggacg gcgtaaactt cggattgcgc caatacattc aaatccgagt
     2641 cggtaataat catcgcgact tcgataatgc ggtcggtttc gggattcagc cccgtcattt
     2701 ccatatcgag ccagcagagg ttgtttttgt cctgcacggt gtttcctttt cgtttcagcg
     2761 ttttacgccg ctcaagcgcg cccagccttc ttcggtttcc gccgggtcga ggtcgaacca
     2821 ttggctgtaa atgccgccga gttcttcggc ctgttcgtcc aacaaaccgg acaacacgat
     2881 gcgtccgccc tgtttggtgc gggctgcgag catttcgccg agcatacgca aagggttggc
     2941 gaggatgttg gcgacaacta cgtcgaattg cccttgaggc agaccgtcgg gcaggaagaa
     3001 ttgtgcatcg acgttgtttt gcgcggcgtt gtccctgccg gcgcggacgg cctgttcgtc
     3061 aatatccacg ccgacggcgg aacctgcacc gagtttgagg gcggcgatgg tcaggatgcc
     3121 cgaaccgcag ccgtagtcga ggacgctttc gccgtttttg agttgcgtat ccagccattt
     3181 gaggcagagg cgcgtggtcg ggtggctgcc ggtgccgaag gcgaggccgg gatcgaggcg
     3241 gaggttgacg gcagtgcctt cgggggcttc gtgccaagag ggggtaatcc acaggcgttc
     3301 ggaaatttgg atggggtcga attgcgcttg ggtcaggcgt acccagtctt ggtcttcaag
     3361 ggtttcgccg gtgtatgcca agtcttttaa tccgcattct tgtgcggcgg tttggatgat
     3421 ggcggcggct tcgtcgtgtt cgccgaacag ggcgatgact ttgctctgct gccagatttg
     3481 ttcggcgggc ataccgggtt cgccgaaaat cgcctgttcg ttttgcgtgc cggcgtaggc
     3541 atcttcgatg gcggcggaga gtgcgccgtg ttccatcagc gcgtcggcga ggcgttcggc
     3601 gacggcatcg ttgacgttga cggtgatttg ttggtagggc ataacgggct ttcttaacag
     3661 accttcggaa tagggtcgta ctgtataagg ggatgggtgt gtaacggaaa tgccgtctga
     3721 aaacggacaa actgtttcag acggcatatc ggcggcggtt tacttgtcct gtttggcttt
     3781 gcgatcttcc agccagtgtt ccaaatagtg gatgctgaca ccgccttttt ggaaacccgc
     3841 atcggcgaac aggtcgcggt gaagcggcgt attggttttg atgccggtta ccgccagctc
     3901 ggcgagtgcg acgcgcattt tcgccattgc ctgttcacgc gttttgccgt gtacgcagat
     3961 tttgccgatc aggctgtcgt agtacggtgg gatgcggtag ccttggtaaa tgtggctgtc
     4021 cacgcggata ccgaagccgc cgggcaggtg gcagctttca atcgggcccg ggctggggat
     4081 gaagttgtat gggtcttcgg cgttgatacg gcactcaaac gcgtggcctt cgacttgaat
     4141 atccttttgt ttgtattgca aaggcaggcc ggcggcgatg cggagttgct cctgcacgat
     4201 gtccacgccg gtgatgagct cggtaaccgg atgctcgacc tgaacgcgcg tgttcatctc
     4261 gataaagaaa aattcgccgt cttcgtataa aaactcaaac gtacccgcgc cccggtagcc
     4321 gatgcgtttg caggcatcgg cacaggcgtt gccgattttg gcgcgttctt tttcagtgat
     4381 gaacggagcc ggtgcttcct cgatgacttt ttggtggcgg cgttgcagcg aacagtcgcg
     4441 ctcggcaagg tagatggcgt tgccgtgttc gtcggcaatc acttggattt cgacgtggcg
     4501 cggacgttgc aaatagcgtt ccatgtaaac catcgggttg ccgaatgccg cgcccgcttc
     4561 ggccttggtc atttcgacag attggaggag gtcttctttt ttctcgacca cgcgcatacc
     4621 gcgaccgccg ccaccaccgg aggctttgat aatgacggga taaccgactt tatcggcgat
     4681 tttgaggatt tcttcgccgt cgtcgggcaa tgcgccgtca gaaccgggga cgcagggtac
     4741 gcctgccgct atcatcgcgt gtttggcgga gactttgtcg cccatcaggc ggatggtgtc
     4801 gggtttcggg ccgataaagg taaagccgga ctgctcgacc tgttcggcga aatcggcgtt
     4861 ttcggcaagg aaaccgtagc ccggatggac agcgtccgcg cagcttactt cggcggcggc
     4921 gataatggcg gggacgttaa ggtagctttg cgcggaagcg gcagggccga tgcacacgga
     4981 ttcgtcggcg agtttgacgt gcaggctgtc tttgtcggcc tcggaatgca cggcgacggt
     5041 ggcaatgccc atttcgcggc aggcacggag tacgcgtaat gcgatttcgc ctcggttggc
     5101 gattaaaact tttttcagca tgatgactgt tcctgtggtt ccggcaaccc gtccgtaaaa
     5161 aaaaaggtgc gggaacgccg aagggggaaa gcatttcaga cggcatcgga agtttatgcc
     5221 gtctgaaaac aggattatcc gatgatgaag agcggttcgc cgaattcgac gggcgtaccg
     5281 ttttcgacca gaatttcttt gaccgtgccg gatttttcgg cttcgatttc gttcatcagc
     5341 ttcatcgctt cgatgatgca cagcgtgtcg ccggctttaa cctgttggcc gacttcgaca
     5401 aaaggcgcgg cattcgggcc gggtgcgcgg tagaacgtgc cgaccatagg cgatttttgc
     5461 gcgtcggaca aatcgcgggc ggcaggtgcg gcggcgggcg cggatgccgc aacgggtgcg
     5521 gcggcaggcg ttacggccgg cgcggcggca ggtacgggcg cggcgtaaac gggtgcggcg
     5581 gcgatggttc gggtgatgcg gactttttcc tcgccttcgg ttacttcgat ttcggcgata
     5641 cccgattctt caaccaaatc aatcagtttt tttaatttgc gcaaatccat ttctgttcct
     5701 ttaaaggctg ccggtgttcc ggcgggttgt tgcgttggtt tttcagaaaa cagccggctt
     5761 gcggcaacgg cgcaaaccgg gcggaatggt gttcggatac ggttttcctg tggtggaaaa
     5821 caaccgtgag aatgtgttta ttttcccgaa gttgtcggta aatgtccagt aaaatatcaa
     5881 aaaacggcgg tttttggggg aaatgtgcag gaagtttgat tttgcgcaca agatgttcca
     5941 ggttaagagt gtttattcta atctgttggt ttttcggaca aagatgccgt ctgaaaaagg
     6001 gctaaagtgc gtataatggc ggcttgcccg aacgagagtg taaaaatgga tatttcagat
     6061 tttgatttta ccctgcccga aaagctgatt gcccagcatc cgcccgaagt gcgcggcagc
     6121 agccgccttt tggttgcgtt gcccgatatg ccgctgcaag accgggtgtt cggcgatttg
     6181 ccggattatg tcgaggcggg cgacgttttg gtgttcaaca acaccaaagt catgaaggcg
     6241 cggctgtttg ggcagaaaga cagcggcggc aggatcgaag ccctgattga gcgcgtgttg
     6301 gacaaccata ccgcactggc gcacatccgt tcgtccaagt cccccaagcc cggtatgggg
     6361 ctggtgtttg aaggcggcat ccgtgccgtg atggtcgggc gtgagggcga actgttctgc
     6421 ctgcgttttg aaggcggtca aaccgtttac gaacttttgg aacagaacgg acacctgccc
     6481 ctgccgcctt atatcgaacg cgccgccgac gcggacgacg acagccgtta tcaaaccgtt
     6541 tatgccaaat atcagggtgc ggtcgccgcg ccgacggcgg gtctgcattt tacggaagaa
     6601 cttttgcgcc gcctgaaaga caaaggcgca gtaaccgcag aagtaaccct gcacgtcggt
     6661 gcgggaacgt tccagcccgt gcgtgtggaa aaaatcgaag aacacaaaat gcacagcgaa
     6721 tggtttgaag tgccgtctga aaccgccgcc gccgttgagg cggcaaaagc acgggggaac
     6781 aaagtctggg cggtcggcac gacttccatg cgcgccctcg aatctgccgc gcgtgcgacg
     6841 ggtcgtctga aagcggggca gggcgacacc gatattttca tcacgccggg ctaccgtttt
     6901 aatgttgtcg acaggctggt taccaatttt catttgccga aatcgacgct gctgatgctt
     6961 gtcagcgcgt tttcgggtat gggtcatatc cgcgccgcgt atcgttatgc ggtcgaacgc
     7021 gaataccgtt tcttcagcta cggcgatgcg atggttttgg ggcggaacga aggggtggta
     7081 cgttagaaca gccccaagtc tattggggga agacaagtgc cgtctgaacg gacgttcgga
     7141 cggcattctt ttgttgattt gaatgaaagg aactgtatga catagattca ggcgcgagag
     7201 gcgagaaact cagtcattgt tgatgacgcg caatacgtta aaattcattc cgttttggtc
     7261 gtataaacat attacatacg ccattttttt gtattcaagg ctgcctgaaa acagtgggca
     7321 agaatatcta acccaacgaa aagctgaaaa agcaacaaaa aataatctgc accttagtcg
     7381 gttggttagt ccaaccttag gggtgcagac cattcaatct ttcaggctgc ctttgtttgt
     7441 ttataagata aatttttagc cgaacacttt ttccaagtgt gcctgataat ctgccaagta
     7501 tttttccact tgtggatttt taaccacatc gttacataag aatgtcggca ggcgggtcat
     7561 acccaaaaac tcgttggctt tgtggaagtg catatacaaa acatcaacgc ctttgccttc
     7621 aaagaaatcg ccttcgcggg taaacgcctc aatcggcgca ttccaagtca gtgaaagcat
     7681 atgttttttg ccttgcaaca agccgcctgt gccgtagccc tcagtcggat tgacgcggtg
     7741 tctgccgtcg ctttggtaga gtttgccgtg tccagcggtt aatacttcgt ctatgtattt
     7801 tttcactgtc caaggctcgt gcatccacca gcccggcatc tgccaaatca cagcatccat
     7861 ccaaacgaat ttttcgattt ctgcctcaac atcatagccg gcatcaatca cggtttcttg
     7921 aacattgtgt ccgagcgcgg tcaaaacttc tttcgctttt ttgtgaagcg tgcggtttaa
     7981 cccgccgtga gaatgtccga acgctttgcc gccgtctaat aataaaatat tcatttgtta
     8041 cctcgtttgt gaattgatga atgtattgtg ccgttttact ttataattta aaagtgcaaa
     8101 aataagaaaa cacttttgcg tcaaatgaaa taatcagatg ttccaacaca cgggatggca
     8161 cataaagcac cgccctgtgt gccgtcctga ttcggaaggg gttacacccc tcccaaataa
     8221 agtctgatcc tgccgcccta aagggcgggg ttccaaccga aaaggaaaca cgatgaaaac
     8281 caattcagaa gaactgaccg tatttgttca agtggtggaa agcggcagct tcagccgtgc
     8341 ggcggagcag ttggcgatgg caaattctgc cgtaagccgc atcgtcaaac ggctggagga
     8401 aaagttgggt gtgaacctgc tcaaccgcac cacgcggcaa ctcagtctga cggaagaagg
     8461 cgcacaatat ttccgccgcg cgcagagaat cctgcaagaa atggcagcgg cggaaaccga
     8521 aatgctggca gtgcacgaaa taccgcaagg cgtgttgcgc gtggattccg cgatgccgat
     8581 ggtgctgcat ctgctggcgc cgctggcagc aaaattcaac gaacgctatc cgcatatccg
     8641 actttcgctc gtttcttccg aaggctatat caatctgatt gaacgcaaag tcgatattgc
     8701 cttacgggcc ggagaattgg acgattccgg gctgcgtgca cgccatctgt ttgacagccg
     8761 cttccgcgta atcgccagtc ctgaatacct ggcaaaacac ggcacgccgc aatctgcaga
     8821 agagcttgcc ggtcaccaat gtttaggctt caccgaaccc ggttctctaa atacatgggc
     8881 ggttttagat gcgcagggaa atccctataa gatttcaccg cactttaccg ccagcagcgg
     8941 tgaaatctta cgctcgttgt gcctttcagg ttgcggtatt gcttgcttat cagatttttt
     9001 ggttgacaac gacatcgctg aaggaaagtt aattcccctg ctcgccgaac aaacctccaa
     9061 taaaacgcac ccctttaatg ctgtttatta cagcgataaa gccgtcaacc tccgcttgcg
     9121 cgtatttttg gattttttag tggaggaact gggaaacaat ctctgtggat aattctataa
     9181 aaacctgcca taaaattgtt tttactcact taataacttt gagaaaaaat aaataagatg
     9241 atgtatagtc ggcggcaatg gcagtctata tggggagcgt gatagggctg ttccttatgt
     9301 acggcttgtg tgtggcaaca tcggctttcc aaatgacaaa atgccgtctg acaccgtaaa
     9361 aaaaggtttc agacggcatt ttcaacccga ttcaggcatc agctgcggtt tttcaaacgc
     9421 ccgtgcagtt cttgaacgct gtacacgccc aagtggtcgc ggcttttcgc gccttcgctc
     9481 atcgcttcgc cgcccgcagt agtggtgtat tgcggcacac gttgctgcaa tgcgctttgg
     9541 cggatgatgt ggctgtcgga cacggattgc ggatcgctgg aaacggtatt cacgaccagt
     9601 gcgatttcgc cgtttttcag cgcgtcgccg atgtgcgggc ggccttcggg gactttattg
     9661 atggtttgta caatcagccc gtgttcggtc aggtattgcg ccgtgccgcg cgtggcgcag
     9721 atgccgtagc ctaaggcttg gaagtttttg gcggttttaa tgacgcgttc tttgtcttct
     9781 tcgcgcacgg agaggaagat tttgccggtc gggttgaggc gttcgcccgc gccgagttgg
     9841 gctttgtagt aggcttcgcc aaagcttgcg cccacgccca tgacttcgcc ggtggagcgc
     9901 atttccggtc ccaaaatcgt atccacgccc gggaatttga tgaatgggaa cacggcttct
     9961 ttaacggcat agaaatcggg gacaacttct ttttccacgc cttgttcttt cagggaaatg
    10021 cctgccatgc agcgcgcgcc gactttggcg agcggcacgc cggtggcttt ggagacgaag
    10081 ggcacggtgc ggctggcgcg cgggttcact tccaatacga acaccacgcc gtcttgtacg
    10141 gcaaactgca cgttcatcag tccgaccacg cccagcgcgt acgccatcgc tttagtttgg
    10201 cggcggattt cgtcttggat ttcttcgctt aaggagtagg gcggcagcga gcagccggag
    10261 tcgccggagt ggatgcccgc ctgttcgacg tgctgcatga tgccgccgat aaccacgtct
    10321 ttgccgtctg aaacgcagtc cacatccact tcaatcgcgt tgttgaggaa gaaatcgagc
    10381 aacacggggc tgtcttcgga aacctgcacg gcttcgcgca tgtatttttg caaggcttcg
    10441 gcagagtgga caatctgcat cgcgcgtccg cccaaaacat aagacgggcg cacgaccagc
    10501 ggatagccga tttcttcggc tttgacgagt gcttcttctt cgttgtgggc gatgcggttg
    10561 ggcggttggc gcagacctaa gtcgttcaac actttttgga agcgttcgcg gtcttcggcg
    10621 gcgtcgatgc tgtcggcgga cgtgccgatg atgtttacgc cgttttcaac cagcgcgttg
    10681 gcgagtttga gcggggtttg accgccgtaa tgcacaatca cgccccacgg gttttcggtg
    10741 cggacgattt ccaacacgtc ttccaatgtc agcggctcga aatagaggcg gtcgctggtg
    10801 tcgaagtcgg tggacacggt ttctgggttg cagttgacca taatcgtttc aaaaccggat
    10861 tcgcgcaggg cgagcgcggc gtgaacgcag cagtagtcaa actcgatgcc ctgaccgatg
    10921 cggttcgggc cgccgccgag aatcatcact tttttacggt cggaaggacg ggattcgcat
    10981 tcttcttcgt aagtggagta aagataggcg gtttcggtgg cgaactcggc ggcgcaggtg
    11041 tcaacgcgtt tgtaaaccgg atgcagcttc agcgcgtagc ggtgttcgcg cacttctttt
    11101 tcttttacgc ccaaaagctg cgcgatgcgt ttgtcggaga agcctttgcg tttcagacgg
    11161 cgtagggcgg cgaaatccaa atcactcaaa atgccgtctg aaaccgattt ttcttctttc
    11221 accaagtctt cgatttgcgc caagaaccaa gggtcgatgg cgcagatttc gtggatttct
    11281 tccggcgtga agcccgcgcg gaacgcgtct gccacaaaca gcatgcgctc ggggccgggg
    11341 tttgccagtt cgcggcggat ttccgctttg tcggagcttc tcggattgaa gccgcacaag
    11401 cctgtttcca agccgcgcag ggctttttgg aaactttcct gaatcgtgcg tcccatcgcc
    11461 atcacttcgc ccaccgattt catctgcgtg gtcaggcggt cgtctgcggc agggaatttt
    11521 tcaaacgcaa aacgcgggat tttggttacc acatagtcga tggacggctc gaatgacgcg
    11581 ggggttttgc cgccggtgat gtcgttgcgc aactcgtcca gcgtaaagcc gaccgccagt
    11641 ttcgccgcca ccttcgcaat cgggaagccc gtcgctttgg aagccagcgc ggatgaacgg
    11701 ctcacgcgcg ggttcatctc aatcacaatc atctcgccgt tttcagggtt caccgcaaac
    11761 tgcacgtttg agccacccgt gtccacgccg atttcgcgca atactgccaa cgaagcatta
    11821 cgcatgattt ggtattcttt gtctgtcaat gtttgcgccg gcgcaaccgt aatcgagtcg
    11881 cccgtatgca cgcccatcgg gtcgaagttt tcaatcgagc aaatgatgat gcagttatcg
    11941 ttcttatcgc gcaccacctc catctcgtac tctttccagc cgaggacgga ctgctcaatc
    12001 agcagctcgt gcgtgggcga cgcatcgaaa ccgcgttcgc aaatcgccaa aaactcgtct
    12061 ttattgtagg caatgccgcc gcccgaaccg cccatcgtga aagacggacg aatcagcgtc
    12121 gggaagccga cctgttcttg cgccgccaag gcttcgttca tcgtgtggca gacaaaagat
    12181 ttcgggcaag acaaaccgat tttttccatc gcttctttaa agcggccacg gtcttccgcc
    12241 ttgtcaatcg cgtcttctgt cgcgccgatt aactcgacgt tgtatttcgc cagcacgccg
    12301 ttgcgcgcca aatccagcgc acagttcagc gcggtctggc cgcccatcgt gggcagaatc
    12361 gcatcgggcc gctctttggc gataatcttc tccaccgtct gccacataat cggctcgatg
    12421 taggtaacat ccgccatttc agggtcggtc atgatggtgg cggggttgga gtttaccaaa
    12481 atgactttat agccttcttc acgcaaagcc ttgcaggcct gtgcgcccga atagtcaaat
    12541 tcgcaggcct gaccgataac gatagggccg gcgccgatga taaggatgga ttttaggtcg
    12601 gtacgtttgg gcatggtggg tctttctttt gaagaatttg gattattgac gattggtaac
    12661 ttctctaatt atttctgcat ctgttttttc atcgcttgga ttatctgaaa agaaaaaact
    12721 gtaattacta tcggctttaa atttttcgta tagctctggg cgcaaaattt ttgctttttc
    12781 actattttcc acgctcctgc gattaggctt gccagcctta tctttcccat ttctacggac
    12841 atcatagcaa taaatagtgt taggagaatt aggttctaaa cgagtagcta caatcttttt
    12901 ataaattatg tctaaatctt ttttagtttg tgttggaatg aaatctgcaa aaagattact
    12961 aaaactctga aaaatttctc tgattttcgc agcaccagcc tgaacattaa ttttaaaaaa
    13021 attaataaaa tcagtagcac ttttaaaatg aacttcataa aaatcagcat acgcaaatat
    13081 tgaattttca ctattcaaat taaaaaactc taattttgct tgtgcataat catctggtct
    13141 aggttcatca ggtttatacc tagtcaaaat aacggcgtat tgcctttgat tataattaaa
    13201 aggaaatgct tcaattattc tatttttgtt tctcatatca ttaagcaaat actttaagtt
    13261 attgaaatta ataggtattg acatatttaa actcctgcga atatgttgca ataaacgtag
    13321 caatcgtagg ttgggttgaa aacccaacac aaaccgctta attgtctaaa atgttgggtt
    13381 tgctaaccta acttgtatat cgaaaccccc gtatcgtagc aagccgtagc ccgtatgtag
    13441 ggtatgtgcg gtacgtatgc acgcgttctc cattttccct gcaaccccaa cccaccgcgt
    13501 gcgtgccttg cggcacactc tctgccgatg agttcaaagg tcgtctgaaa aaacgttcgc
    13561 aacgtttgtt ccacctgcct tgcgataaag gctgcctgaa acattcccgc tgtcgatgtt
    13621 tcgggcattc tttttcagac gacctgcaac gcctgaatct gctgcaacct accccctccc
    13681 ccgtggggga gggctgggga gagggcattc tccgaatttc ggcaaccttt cctaacactc
    13741 taaccgccaa gacacaagcc ttgtggcttg ttgccctctc tctaactctc tcccacggga
    13801 gagaggactg ggcggttgtt ggggctaagg tttctgtaaa ctaatcaggt tatgcaggct
    13861 gctttttgtt tttcagacgg cctttataaa tgctcaattc agtcggcttt atcctattat
    13921 tttcaataat ccaatcaaaa tcagccatct gctatcgtgc agcttgcttt tccaattctt
    13981 gcaacacgag caggatttct gtcagcacat cgtttgtctg ctgtaaaatc tcgtgattcc
    14041 aaaaccgcag tacggtaaag cccaagctgt tgagatatgc cgtccgcgcg tggtcgtatg
    14101 cggcttgttc tgtgtgctgc cctccgtctg cttcgacaat caacttgggc gttacgcaca
    14161 taaaatcaac aatatagttt cccatcggct gctggcggcg gaatttatag ccgttcagac
    14221 gacctgcccg caggtgctgc cacaattttg cttccgcccc gctcatttct tggcgcatgg
    14281 ctttggcgcg ttggcgcaag atggggttgt cggtggtcaa gagtttctcg tgcgggttca
    14341 ttttgttgtc gtgctgtttg ctgccctctc tctaactctc tcccacgggg agagaggacg
    14401 gggcggttgt tggggttaaa ggggctgtaa ggaaaacaag tcgttcaggc cactttttac
    14461 ttttcagacg acctgcaatc aacggttgta aatccaagtt gcttttcaaa ccgcctgtaa
    14521 ccgcaaaact tgctgcaacc taccccctcc cccgtggggg agggctgggg agagggcatt
    14581 cttcgaattt cggcaacctt ccccaacacc ctaaccgccc aaacacaagc cttgctgttt
    14641 gttgccctct ctctaacgct ttcccacagg gagacaggac ggggcggctg tagtgattaa
    14701 gggttttgca aggaaaacaa ggaaaacaag ttgtacaggc tgttttttta tttttcaagc
    14761 gacctgaaat caacgcttgt aaatccaagt cgcttttcaa actgcctgca accgcaaaat
    14821 ctgctgcaac ctaccccctc ccccgtgggg gagggctggg gagagggcat tttccaagtt
    14881 gcggcaatct ttcccaaatc ccttagtctt ctaaaataca agccttacgg ttgttgccaa
    14941 atgaaacttc ttccataccc aaaacttgcg tgtaaaacgc aatggttcgg tcaatgtcgg
    15001 caacggtcag taccagatgg tcgagtgcgc taatcttcat ttcccgcttt ctttttcagg
    15061 cggcggcagt gccgtctgaa agccattatg cccgttttgc cgctttcata ttgccaatga
    15121 atttgtcaaa caaatagccg acatcttgcg ggccggggct ggcttcgggg tggccttgga
    15181 agcagaacac aggtttgtcg gtcagctcga tgccttgcaa agtgttgtca aacaaggatt
    15241 tgtgggtaat gcgtgcgtta gcgggcaggg tgtcggcatc aacggcaaaa ccgtggtttt
    15301 ggctggtgat gacgactttg ccgctgtcca aatcttgcac agggtggttc gcaccgtggt
    15361 ggctgaagcg cattttcagg gttttcgcgc cgatagcgag gctgatgagc tggtgtccca
    15421 agcagatgcc gaaaatcggt ttgccgcttt ccatcagttt ttgcacggct tcgatggcgt
    15481 aggtgcaagg ctcggggtcg ccggggccgt tggacaggaa cacgccgtcg ggattgagtg
    15541 ccaacacgtc ttgtgcgctc gtttgggcgg ggacgacggt caggcggcag ccgcgcgagg
    15601 cgagcatacg caggatgttg gttttcacgc cgaaatcgta ggcgacgacg tggtaaggct
    15661 gttcgtcagg ggtaacgaaa cccttgccca atgcccattc accttccgtc cattcgtaag
    15721 tttccgtgca ggaaacttct tttgccaagt ctttgccgac catgctgccg aacgcggcga
    15781 tgagttcttg cgctttttcg accgtagcgt ccgcgccggt cagaatcgca ccgccttgcg
    15841 cgcctttttc acgcaacagc gtggtcaggc ggcgggtgtc gatgtcggcg atggcaacgg
    15901 tttggttgcg caccagatag tcgtgcaggc tttcggaggc gcggaagttg ctgtgcaaga
    15961 gcggcaggtc gcggataatc aaaccggcgg cgtaaacgct gcggctttct tcatcttcgg
    16021 cgttggtacc ggtattgccg atgtgtgggt aggtgagggt aacgatttgt ttgcagtagg
    16081 acgggtcggt caggatttcc tgatagccag tcatcgaagt attgaacacg acttcgccgg
    16141 aagtcgaacc ttcgtaaccg attgatgtgc cgtggaatac gctgccgtca gcgaggacga
    16201 ggagggcggg ggtgctcatg atgggaatcc tgtttttaat aaaattcttg acaatgccgt
    16261 ctgaagggac ttcggcaggg ggcatccggt cggaaaaatc cggtcaaaaa aaaacacgcc
    16321 gcgcaagata gacgcgtaac gtgcttttcg ggcaagtgcc tataccctga aagcagcata
    16381 ttttaagacg aaacataccc gatttcaagc gcaaacgcgg caggcgggct gatatgttcg
    16441 cgcgaaaacg gaaatccgtg gcgtaaaacc gcccgctccg cgcccactat gcccgttacg
    16501 catttcccca cgtccgtccg gcgaaactat gggaataccc gaa
//
LOCUS       DAXHNP010000028        16485 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.028, whole genome shotgun sequence.
ACCESSION   DAXHNP010000028 DAXHNP010000000
VERSION     DAXHNP010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16485
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.028"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            199..1263
                     /locus_tag="ACFM5C_000692"
     CDS             199..1263
                     /locus_tag="ACFM5C_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-butanediol dehydrogenase"
                     /protein_id="HFC6068439.1"
                     /translation="MKAARFYDKGDIRIEDIPEPTVAPGTVGINVAWCGICGTDLHEF
                     MEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEGVDDIKVGQHVVVEPYIIRD
                     DVPTGEGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLS
                     VGHHAYVRSGAKAGDVALVGGAGPIGLLLAAVLKAKGIKVIITELSKARKDKARESGV
                     ADYILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVLDTLVEACKPAANLVIVSIWS
                     HPATVNVHSVVMKELDVRGTIAYCNDHAETIKLVEEGKINLEPFITQRIKLDELVSEG
                     FERLIHNNESAVKIIVSPNL"
     gene            1404..1727
                     /locus_tag="ACFM5C_000693"
     CDS             1404..1727
                     /locus_tag="ACFM5C_000693"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HFC6068440.1"
                     /translation="MGDSVLSAIQQTITQRKSANPSESYVAQLLHKGEDKILKKVIEE
                     AGEVLMASKDKNPSHLVYEVADLWFHTMILLTHHDLKAEDVLDELARRQGLSGLAEKA
                     ARTES"
     gene            1799..2122
                     /locus_tag="ACFM5C_000694"
     CDS             1799..2122
                     /locus_tag="ACFM5C_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFC6068441.1"
                     /translation="MDNCIFCKIAAKDIPAQTVYEDGEMVCFKDINPAAPVHLLLIPK
                     VHFDSLAHAAPEHQPLLGKMMLKVPEIAKAAGLADGFKTLINTGKGGGQEVFHLHIHI
                     MGTPV"
     gene            2169..2372
                     /gene="tatA"
                     /locus_tag="ACFM5C_000695"
     CDS             2169..2372
                     /gene="tatA"
                     /locus_tag="ACFM5C_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HFC6068442.1"
                     /translation="MGSFSLTHWIIVLIIVVLIFGTKKLRNVGKDLGGAVHDFKQGLN
                     EGTDGKEAQKDDVIEHKKDEDKA"
     gene            2376..3062
                     /gene="tatB"
                     /locus_tag="ACFM5C_000696"
     CDS             2376..3062
                     /gene="tatB"
                     /locus_tag="ACFM5C_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFC6068443.1"
                     /translation="MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVG
                     SVKQEFDTQIELEELRKAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDGLKPWEKLP
                     EQRTPADFGVDENGNPLPDAANTLSDGISDVMPSERSYASAETLGDSGQTGSTAEPAE
                     TDQDRAWREYLTASAAAPVVQTVEVSYIDTAVETPVPHTTSLRKQAISRKRDFRPKHR
                     AKPKLRVRKS"
     gene            3076..3846
                     /gene="tatC"
                     /locus_tag="ACFM5C_000697"
     CDS             3076..3846
                     /gene="tatC"
                     /locus_tag="ACFM5C_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFC6068444.1"
                     /translation="MSETQNEQPVQPLVEHLIELRRRLMWTVVGILVCFFGLMPFAQQ
                     LYTFIADPLMANLPKDTSMIATDVIAPFFVPVKVTLMAAFLISLPHTLYQIWAFVAPA
                     LYQNEKRLITPLVLSSVSLFFIGMAFAYFLVFPVIFKFLAGVTPVGVNMATDIDKYLS
                     FILGMFVAFGTTFEVPIVVILLTKIGVVTTGQLKRARPYVIVGAFVIAAIITPPDVIS
                     QTLLAIPLILLYEAGIWFGRFFTPRSEQDGDIQPPATT"
     gene            3899..4507
                     /locus_tag="ACFM5C_000698"
     CDS             3899..4507
                     /locus_tag="ACFM5C_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HFC6068445.1"
                     /translation="MNTLYLGSNSPRRMEILTQLGYRVIQLPAGIDESVKAGETPFAY
                     VQRMAEEKNRTALPLFCETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRL
                     SGKQHTVLTAVCIHYRGKTSSRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG
                     IGGIFIQSIEGSFSGIMGLPVYETVSMLQDLGYRSPLSALKP"
     gene            4516..4869
                     /locus_tag="ACFM5C_000699"
     CDS             4516..4869
                     /locus_tag="ACFM5C_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HFC6068446.1"
                     /translation="MNRQTAYLLTSFSLIALIILSLSWELWIAPLRPGGSWLALKALP
                     LCLPLSGILKKKIYTYQYSSMLVLIYFAEAVMRLFDAYPAEQICAALSAVFSIIFFIS
                     CLSFVKQYKETNNAR"
     gene            4859..6673
                     /locus_tag="ACFM5C_000700"
     CDS             4859..6673
                     /locus_tag="ACFM5C_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Wzy polymerase domain-containing protein"
                     /protein_id="HFC6068447.1"
                     /translation="MPAETTVSGAHPAAKLPIYILPCFLWIGIIPFTFALRQQPSPDF
                     YHDAAAAAGLIVLLFLTAGKKLFDVKIPAISFLLFAMAAFWYLQARLMNLIYPGMNDI
                     VSWIFILLAVSAWACRSLVAHFGQERIVTLFAWSLLIGSLLQSCIVVIQFAGWEDTPL
                     FQNIIVYSGQGVIGHIGQRNNLGHYLMWGILASAYLNGQRKIPAALGVICLIMQTAVL
                     GLVNSRTILTYIAAIALILPFWYFRSDKSNRRTMLGIAAAVFLTALFQFSMNTILETF
                     TGIRYETAVERVANGGFTDLPRQIEWNKALAAFQSAPIFGHGWNSFAQQTFLINAEQH
                     NIYDNLLSNLFTHSHNIVLQLLAEMGISGTLLVAATLLTGIAGLLKRPLTPASLFLIC
                     TLAVSMCHSMLEYPLWYVYFLIPFGLMLFLSPAEASDGIAFKKAANLGILTASAAIFA
                     GLLHLDWTYTRLVNAFSPATDDSAKTLNRKINELRYISANSPMLSFYADFSLVNFALP
                     EYPETQTWAEEATLKSLKYRPHSATYRIALYLMRQGKVAEAKQWMRATQSYYPYLMPR
                     YADEIRKLPVWAPLLPELLKDCKAFAAAPGHPEAKPCK"
     gene            6863..7540
                     /gene="misR"
                     /locus_tag="ACFM5C_000701"
     CDS             6863..7540
                     /gene="misR"
                     /locus_tag="ACFM5C_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator MisR"
                     /protein_id="HFC6068448.1"
                     /translation="MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSG
                     QYDVVVLDSMMPKMNGLDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKP
                     CTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEF
                     NLLEVLMRHAGQVVSKETLSVEALDRKLAKFDRSIDVHISSIRHKLGDASLIQTVRGL
                     GYLFVKN"
     gene            7553..8959
                     /gene="misS"
                     /locus_tag="ACFM5C_000702"
     CDS             7553..8959
                     /gene="misS"
                     /locus_tag="ACFM5C_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     MisS"
                     /protein_id="HFC6068449.1"
                     /translation="MKLFQRIFATFCAVIVCAIFVASFSFWLVQNTLAENQFNQRRTI
                     ETTLMGSIISAFRARGDAGAREILTEWKDSPVSSGVYVIQGDEKKDILNRYIDSYTIE
                     RARLFAAGHPHSNLVHIEYDRFGEEYLFFTKDWDKLQARRLPSPLLIPGLPLAPIWHE
                     LIILSFIIVVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQVDDRDDELSH
                     LAIQFDKMVEKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQPQKQEQYLKRL
                     EGELTRMDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQKNGQTVTL
                     SADGKIPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDN
                     GPGVDEMQLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKIIAENIKPNGLRM
                     RFILPKKKTGSKTEKSAN"
     gene            9077..11503
                     /locus_tag="ACFM5C_000703"
     CDS             9077..11503
                     /locus_tag="ACFM5C_000703"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6068450.1"
                     /translation="MSAQTDPGYFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGK
                     ITPVNPRHHTIAGLPAYTSLNKIPGNADLIIAVTLPDSYDTLFKTCRKKQLRHIILIQ
                     DWDSLSAAELHTAETAIRKHHGNGLNITACTTAGIQLPSLGLNISTQDGYAAGHTAIL
                     TGNAAVSRQIDNILNKLRQGTSRHISLHPGISPITSADWLNRFGHSLHTKTAVLHHNP
                     EEDQRKLFSAIRQFTRHTPLILHITCRTTETDRAVLHCLARHCNFLISFNADDLEAAL
                     RAQLSDIPPLSRLDILSDTPAEWLNAHAPKTLALHFPNLPHHIRNGHLTGTPTPSICH
                     DIASRQLARPDTQAVLTILSPSGHEDYKKTARALIRLSEQTAKPLLVSSPFSDGITHF
                     DTPTQAIRTLSYRNTAAALKQAQLDIAPPQPCRLKTPQPQNIKKALAAANPSLLAEAL
                     HLPPYRHTTHNAVQFQFDSHPLYGDILTARCNGQTTAVLPPFTTLDSRHLARFAELDG
                     TQTLDQFLHTLTVIPEYRQHILGITLNLNGGQYSSDFLLKTPETHDTPKRKNTGKAAQ
                     TLEHAAAKMQSAAAYLKHKNPTAAEFLRHTSEAAAELLGSKTETGAAVHNVLAPYPAA
                     YPKTLSLRNNTTVTITPILPEDAEAKQQFVRSLGPEARYTRFMTHTNELPAATLARLC
                     NPDYHCEAAWTAKDADSNIVAVVRHSRLNRNECEFGITLAEHMRGSGLAQKMMELIIQ
                     TAAQQGYRTMSADILKTNTPMIKLAEKSGFTLKESDTEKNLYRAYLNLAADKTTEKTN
                     KNLHTDHKIT"
     gene            11548..11793
                     /gene="rpsP"
                     /locus_tag="ACFM5C_000704"
     CDS             11548..11793
                     /gene="rpsP"
                     /locus_tag="ACFM5C_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFC6068451.1"
                     /translation="MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVAN
                     EKQERVRLNADRLNHWIAQGAQVSDSVAKLIKEQKAA"
     gene            11809..12318
                     /gene="rimM"
                     /locus_tag="ACFM5C_000705"
     CDS             11809..12318
                     /gene="rimM"
                     /locus_tag="ACFM5C_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748672.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFC6068452.1"
                     /translation="MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV
                     KDGKTISVTLEAGKVVNGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTEEDEYYW
                     TDLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKI
                     ITADWGLDY"
     gene            12318..13067
                     /gene="trmD"
                     /locus_tag="ACFM5C_000706"
     CDS             12318..13067
                     /gene="trmD"
                     /locus_tag="ACFM5C_000706"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFC6068453.1"
                     /translation="MLIQAVTIFPEMFDSITRYGVTGRANRQGIWQFEAVNPRKFADN
                     RLGYIDDRPFGGGPGMIMMAPPLHAAIEHAKAQSSQTAKVIYLSPQGKPLTHQKAAEL
                     AELPHLILLCGRYEGIDERLLQTSVDEEISIGDFVVSGGELPAMMLMDAVLRLVPGVL
                     GDMQSAEQDSFSSGILDCPHYTKPLEFQGMAVPEVLRSGNHGLIAEWRLEQSLRRTLE
                     RRPDLLEKRVLIPKESRLLETIRQEQREIQS"
     gene            13083..13448
                     /gene="rplS"
                     /locus_tag="ACFM5C_000707"
     CDS             13083..13448
                     /gene="rplS"
                     /locus_tag="ACFM5C_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFC6068454.1"
                     /translation="MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQA
                     YEGVVIARRNRGLNSNFIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYL
                     RGLTGKAARIKEKLPARKG"
     gene            13468..13773
                     /locus_tag="ACFM5C_000708"
     CDS             13468..13773
                     /locus_tag="ACFM5C_000708"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068455.1"
                     /translation="MPSEPSDGISYCRNIRNGTAPKSTPLPAHPESPSEPNKIYRLNV
                     IQYHISHITINALPPSLSKPQIIMTPSLLLSGLTFRLILALIAVSLLWGVYFWAVSA"
     gene            13770..14495
                     /locus_tag="ACFM5C_000709"
     CDS             13770..14495
                     /locus_tag="ACFM5C_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010361246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFC6068456.1"
                     /translation="MSIIVENLTVSYRRRPAVHHVDITFEEHSMWAVFGPNGAGKSTF
                     LKSLMGLQPIDTGSIRLDGLTRQNIAYLPQQSDIDRSQPMTVFDLAAMGLWYEIGFFK
                     GINTAQKQRVHEALERVGMRQFAGRQIAHLSNGQFQRVLFARMLVQNAKFLLLDEPFN
                     AVDVRTTYELLDVLQKCHCGGHAIIAVLHDYEQVRAYFPNTLLLAREKIAAGATETIL
                     TEPYLAQANAKMQQQESPEWCAS"
     gene            14519..15394
                     /locus_tag="ACFM5C_000710"
     CDS             14519..15394
                     /locus_tag="ACFM5C_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFC6068457.1"
                     /translation="MNLYDLLLAPFAEFDFMRYALASVFCLSLSAAPVGVFLVMRRMS
                     LIGDALSHAVLPGAAVGYMFAGLSLPAMGLGGVAAGMLMALLAGLVSRFTTLKEDANF
                     AAFYLSSLAIGVVLVSKNGSSVDLLHLLFGSVLAVDIPALQLIAAVSSLTLITLAVIY
                     RPLVLESIDPLFLKSVGGKGGLWHVLFLVLVVMNLVSGFQALGTLMSVGLMMLPAITA
                     RLWAKHMGALILLSVLTALLCGLSGLLISYHIEIPSGPAIILCCSVLYLFSVILGKEG
                     GILTKWLKNHRHHTT"
     gene            15471..16385
                     /locus_tag="ACFM5C_000711"
     CDS             15471..16385
                     /locus_tag="ACFM5C_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HFC6068458.1"
                     /translation="MKHPKLTLIAALLTTAATAAPLPVVTSFSILGDVAKQIGGERVS
                     IQSLVGANQDTHAYHMTSGDIKKIRSAKLVLLNGLGLEAADVQRAVKQSKVSYAEATK
                     GIQPLKAEEEGGHHHDHDHDHEGHHHDHGEYDPHVWNDPVLMSAYAQNVAEALIKADP
                     EGKVYYQQRLGNYQMQLKKLHSDAQAAFNAVPAAKRKVLTGHDAFSYMGKRYHIEFIA
                     PQGVSSEAEPSAKQVAAIIRQIKREGIKAVFTENIKDTRMVDRIAKETGVNVSGKLYS
                     DALGNAPADTYIGMYRHNIKALTNAMKQ"
BASE COUNT         4284 a         5280 c         3629 g         3292 t
ORIGIN      
        1 ccgattcggt tttcagacgg catcattatt tgacctgacg caaacagaaa gccttccgcg
       61 tgcttaaaca catctcttgt agtaaaatat ctaaacagat tcaactggaa acggtcaggc
      121 ttcttcacgc cattcccatt tcaaccgccg cctgccagat tcagacggta ttcctacttg
      181 aaaacaagga gcgttacaat gaaagcagca cgtttttacg ataaaggcga catccgcatc
      241 gaagacatcc ccgaaccgac cgtcgccccc ggcactgtcg gcatcaatgt cgcctggtgc
      301 ggcatctgcg gtactgacct gcacgaattc atggaaggcc cgattttcat tccgccttgc
      361 ggtcatccgc acccgatttc cggcgagtcc gcacccgtca cgatgggaca cgagttctcc
      421 ggcgtggtct atgccgtcgg cgaaggcgtg gacgacatca aagtcggcca acacgtcgtg
      481 gtcgaaccct acatcatccg cgatgacgta ccgaccggag aaggcagcaa ctaccacctc
      541 tccaaagata tgaactttat cggcttgggc ggctgcggcg gcggtctgtc cgaaaaaatc
      601 gccgtcaaac gtcgttgggt gcatccgatt tccgacaaaa tcccgttgga tcaagccgct
      661 ttgatcgaac cgctgtctgt cggacaccac gcctatgtac gcagcggcgc gaaagcaggc
      721 gacgtcgcat tggtcggcgg tgcaggtccg atcggtttgc tgttggctgc cgtgttgaaa
      781 gccaaaggca tcaaagtcat catcaccgag ttgagtaaag cacgcaaaga caaagcgcgc
      841 gaatccggcg ttgccgacta catcctcgac ccgtccgaag tcgatgttgt cgaagaggtg
      901 aaaaaactga ccaacggcga aggcgtggac gtggcattcg aatgtaccag cgtgaacaaa
      961 gtgttggata ctttggtcga agcctgcaaa cctgccgcca atttggttat cgtatccatc
     1021 tggagccacc ctgcaaccgt caacgtccac agcgtcgtga tgaaagagct ggatgtgcgc
     1081 ggcacgattg cctactgtaa cgaccacgcc gaaaccatca aactggtcga agaaggcaaa
     1141 atcaacctcg aacccttcat cacccagcgc atcaagctgg acgaactggt ttccgaaggc
     1201 ttcgagcgtc tgatccacaa caacgaatcc gccgttaaaa ttattgtgag tccaaacctg
     1261 taagcaaatt acatttgcaa cagcacaaat gccgtctgaa acgctcagac ggcattttcc
     1321 aacgaagcgc aacaggcgta ttgcccgaga gcagccgttt agcctatcat tccgaacaaa
     1381 cagaaacaaa cagaaggaaa atcatgggag attccgtact atccgccatc caacaaacca
     1441 tcacccagcg aaaatctgcc aatccgtccg aatcttacgt cgcacagctc ttgcataagg
     1501 gcgaagacaa aatcctaaaa aaagtgattg aagaggcggg cgaagtgttg atggcatcca
     1561 aagacaaaaa cccgtcccac ctggtttacg aagttgccga cttatggttt cacaccatga
     1621 ttcttctgac acaccacgac ctgaaggcgg aagacgtatt ggacgaactt gcgcgccgcc
     1681 aaggtttgtc gggcttggcc gaaaaagccg ctcgcacaga atcttgaatt tatattaaaa
     1741 tccgcacttt cccacattca atccgtctga ccgcttttca gacggcatcg gagccgttat
     1801 ggacaactgt attttctgca aaatcgccgc caaagacatt ccggcgcaaa ccgtctatga
     1861 agacggcgaa atggtttgtt tcaaagacat caaccccgct gctccggttc atctgctgct
     1921 gattcccaaa gtccatttcg attcgttggc acacgccgcg cccgaacatc agcccctttt
     1981 gggaaaaatg atgctgaaag ttcccgaaat cgccaaagcg gcaggactgg cagacggctt
     2041 caaaaccctg atcaacaccg gcaaaggcgg cggacaagag gttttccacc tgcatataca
     2101 catcatgggc acacccgtat aaaccgttat ttcacaatca acccctaata cttacttaag
     2161 gatacatcat gggcagtttt tctctgacgc actggattat cgtactgatt atcgtcgttt
     2221 tgatattcgg caccaaaaaa ctgcgcaacg tcggcaaaga cctcggcggt gcggttcatg
     2281 acttcaaaca ggggctgaac gaaggtacag acggcaaaga agcccaaaaa gacgatgtaa
     2341 tcgaacacaa aaaagacgaa gacaaagcgt aatttatgtt tgatttcggt ttgggcgagc
     2401 tggtttttgt cggcattatc gccctgattg tcctcggccc cgaacgcctg cccgaggccg
     2461 cccgcaccgc cggacggctc atcggcaggc tgcaacgctt tgtcggcagc gtcaaacagg
     2521 aatttgacac tcaaatcgaa ctggaagaac tgaggaaggc aaagcaggaa tttgaagctg
     2581 ccgccgctca ggttcgagac agcctcaaag aaaccggtac ggatatggaa ggcaatctgc
     2641 acgacatttc cgacggtctg aagccttggg aaaaactgcc cgaacagcgg acacctgccg
     2701 atttcggtgt cgatgaaaac ggcaatccgc ttcccgatgc ggcaaacacc ctatcagacg
     2761 gcatttccga cgttatgccg tccgaacgtt cctacgcttc cgccgaaacc cttggggaca
     2821 gcgggcaaac cggcagtaca gccgaacccg cggaaaccga ccaagaccgc gcatggcggg
     2881 aatacctgac tgcttctgcc gccgcacccg tcgtacagac cgtcgaagtc agctatatcg
     2941 ataccgctgt tgaaacccct gttccgcata ccacttccct gcgcaaacag gcaataagcc
     3001 gcaaacgcga ttttcgtccg aaacaccgcg ccaaacctaa attgcgcgtc cgtaaatcat
     3061 aaagagagca atccggtgtc cgaaacacaa aacgaacaac ccgtccaacc gcttgtcgag
     3121 catctcatcg agctgcgccg ccgcctgatg tggacggttg tcggcatctt agtctgcttt
     3181 ttcggcctaa tgccgtttgc ccaacaactc tatactttta tcgccgaccc gctgatggca
     3241 aacctgccca aagacaccag catgattgcc acagatgtca tcgcaccgtt tttcgttccg
     3301 gtcaaagtta ccctgatggc ggcattttta atttcgctgc cgcatacgct ctaccaaatc
     3361 tgggcatttg tcgcccccgc actctaccaa aacgaaaaac gcctgattac gccgctcgtc
     3421 ctctccagcg tcagcctgtt tttcatcggt atggcatttg cctacttttt ggttttcccc
     3481 gtcattttca aattccttgc cggcgttacc cctgtcgggg tcaatatggc gacagacatc
     3541 gacaaatacc tctccttcat cttggggatg tttgtcgcat tcggtacaac gtttgaagtc
     3601 cccattgtcg ttatcctgtt aaccaaaatt ggtgtggtaa caaccggaca gctcaaacgc
     3661 gcccgcccct atgtgattgt cggcgcgttt gtcattgccg ccatcatcac gccgcccgat
     3721 gtgatttcac aaaccctgct tgccattccg ctgattctct tatacgaagc aggtatttgg
     3781 ttcggacgct ttttcacgcc acgttcagaa caggatggcg acatacagcc gcctgcaaca
     3841 acctgacact atgccgtccg aacctccgcc tcataccgcc acagattaag gaataccttt
     3901 gaataccctc tatttaggtt caaacagccc gcgccgaatg gaaatcctga cgcagttggg
     3961 ctaccgcgtc atccaactgc ccgccggcat cgacgaatcc gttaaagccg gcgaaacacc
     4021 tttcgcttac gttcaaagga tggcagaaga aaaaaaccga accgccctgc ccctcttttg
     4081 cgaaaccaac ggcacaatgc ccgattttcc cctgattacc gccgacacct gcgtcgtttc
     4141 agacggcatc atattaggca aaccccgctc ccaagctgaa gcaatcgaat ttttaaaccg
     4201 attgtccggc aaacaacata ccgtcctgac tgctgtctgc attcattatc gcggcaaaac
     4261 gtcaagccgc gtccaaacca accgcgtcgt tttcaagccc ctgagttcgg aagaaatttc
     4321 cgcctatgtg caaagcggcg aaccgatgga caaagccggc gcctacgccg tacaaggcat
     4381 aggcggcatc tttatccaat ctatcgaagg cagcttcagc ggcattatgg gactgcccgt
     4441 ttatgaaacc gtttcgatgt tgcaggattt gggataccgc tcccccttgt ccgcccttaa
     4501 accgtaaaga ccgccgtgaa cagacaaacc gcttacctcc ttacctcttt cagcctgatc
     4561 gcactgataa tcctgtccct ttcctgggaa ctgtggattg caccgttgcg cccgggcggc
     4621 tcgtggctcg cgctcaaagc cctccccctc tgtctgccgc tttcaggtat cttgaaaaag
     4681 aaaatctata cctaccaata cagctccatg ctggttctga tttattttgc cgaagccgtt
     4741 atgcgcctgt tcgacgccta tccagcagaa cagatttgcg ccgcgctttc cgcagtattc
     4801 agcatcatct tcttcatatc ctgcctgtcg ttcgtcaaac aatacaagga aacaaacaat
     4861 gcccgctgaa acgaccgtat ccggcgcgca ccccgccgcc aaactgccga tttacatcct
     4921 gccctgcttc ctttggatag gcatcatccc ctttaccttc gcgctcaggc agcaaccgtc
     4981 gcccgacttt taccacgatg ccgccgccgc agccggcctg attgtcctgt tgttcctcac
     5041 ggcaggaaaa aaactgtttg atgtcaaaat ccccgccatc agcttccttc tgtttgcaat
     5101 ggcggcgttt tggtatcttc aggcacgcct gatgaacctg atttaccccg gtatgaacga
     5161 catcgtctct tggattttca tcttgctcgc cgtcagcgcg tgggcctgcc ggagcttggt
     5221 cgcacacttc ggacaagaac gcatcgtgac cctgtttgcc tggtcgctgc ttatcggctc
     5281 cctgcttcaa tcctgcatcg tcgtcatcca gtttgccggc tgggaagaca cccctctgtt
     5341 tcaaaacatc atcgtttaca gcgggcaagg cgtaatcgga cacatcgggc agcgcaacaa
     5401 cctcggacac tacctcatgt ggggcatact cgcctccgcc tacctcaacg gacaacgaaa
     5461 aatccccgcc gccctcggcg taatctgcct gattatgcag accgccgttt taggtttggt
     5521 caactcgcgc accatcttga cctacatagc cgccatcgcc ctcatccttc ccttctggta
     5581 tttccgttcg gacaaatcca acaggcggac gatgctcggc atagccgcag ccgtattcct
     5641 taccgcgctg ttccaatttt ccatgaacac cattctggaa acctttactg gcatccgcta
     5701 cgaaactgcc gtcgaacgcg tcgccaacgg cggtttcaca gacttgccgc gccaaatcga
     5761 atggaataaa gcccttgccg ccttccagtc cgccccgata ttcgggcacg gctggaacag
     5821 ttttgcccaa caaaccttcc tcatcaatgc cgaacagcac aacatatacg acaacctcct
     5881 cagcaacttg ttcacccatt cccacaacat cgtcctccaa ctccttgcag agatgggaat
     5941 cagcggcacg cttctggttg ccgcaaccct gctgacgggc attgccgggc tgcttaaacg
     6001 ccccctgacc cccgcatcgc ttttcctaat ctgcacgctt gccgtcagta tgtgccacag
     6061 tatgctcgaa tatcctttgt ggtatgtcta tttcctcatc cctttcggac tgatgctctt
     6121 cctgtccccc gcagaggctt cagacggcat cgccttcaaa aaagccgcca atctcggcat
     6181 actgaccgcc tccgccgcca tattcgcagg attgctgcac ttggactgga catacacccg
     6241 gctggttaac gccttttccc ccgccactga cgacagtgcc aaaaccctca accggaaaat
     6301 caacgagttg cgctatattt ccgcaaacag tccgatgctg tccttttatg ccgacttctc
     6361 cctcgtaaac ttcgccctgc cggaataccc cgaaacccag acttgggcgg aagaagcaac
     6421 cctcaaatca ctaaaatacc gcccccactc cgccacctac cgcatcgccc tctacctgat
     6481 gcggcaaggc aaagttgcag aagcaaaaca atggatgcgg gcgacacagt cctattaccc
     6541 ctacctgatg ccccgatacg ccgacgaaat ccgcaaactg cccgtatggg caccgctgct
     6601 acccgaactg ctcaaagact gcaaagcctt cgccgccgcg cccggtcatc cggaagcaaa
     6661 accctgcaaa tgacccgcgc cggcggatgc ggataccgcc cgaaatgtaa agctccatgc
     6721 aagacattgc aaaaaacagc aaaccggtag ggaaatacgc tatcaaaaaa cattgcagcc
     6781 gtgttaagat aaaccgtcaa acaatctttt cacgccccgc ccgaaacagg gtcggggcat
     6841 acccttacga aaaggaaaca ccatgagccg cgtattactc gtagatgacg atgccctgct
     6901 aaccgaactg ctgaccgaat acctgagcgc cgaaggtctg aacgtccgca gcgttcccga
     6961 cggggaagca ggcgtacagg aaatcctgag cgggcagtac gatgtagtcg tattggattc
     7021 catgatgccc aaaatgaacg gcttggatgt cttgaaaaac gtacgcgccc gaagcaccgt
     7081 ccccatcatc atgctgaccg ccaaaggcga cgacatcgac cgaatcatcg gcttggaaat
     7141 gggcgcggac gactatgtcc ccaaaccctg cacaccacgc gaactcttgg cacgcatcaa
     7201 tgccatcctg cgccgcgcac aacacagcgg cgaacagaac aacgcaccca acagcatctc
     7261 cgtcagcgat gtcgtcctgt accccgccaa acgccaggca tccgtcaaag acatgccgct
     7321 cgaactgacc agcaccgaat tcaacctgct cgaagtcctg atgcgccatg ccggacaggt
     7381 agtcagcaaa gaaaccctgt ccgtcgaagc actcgaccgc aagctggcaa aattcgaccg
     7441 cagtatcgac gtacacatct ccagcatccg ccacaagttg ggcgatgcct ctctgattca
     7501 aaccgtacgc ggcttgggct acctgtttgt caaaaactga agcaacgggc aaatgaaact
     7561 gttccaacgc attttcgcca cattttgcgc agttatcgtc tgtgcaatct ttgtggcgag
     7621 tttttctttt tggctggtgc agaacaccct tgccgaaaac cagttcaacc aacgccgcac
     7681 catcgaaacc actttgatgg gcagcatcat ttccgcattc cgggcacgcg gggacgcggg
     7741 cgcgcgcgaa atcctgacgg aatggaaaga cagccccgtc tcatcgggcg tgtacgttat
     7801 acagggcgac gagaaaaaag atatcctgaa ccggtatatc gacagctaca ccatcgaacg
     7861 cgcccggctt ttcgccgccg gacacccgca ttccaacctc gtccatatcg aatacgaccg
     7921 cttcggcgaa gaatacctgt tcttcaccaa agactgggac aaactccaag cccgccgcct
     7981 gcccagcccc ctgttgatcc ccggtctgcc gctcgccccg atttggcacg aactcatcat
     8041 attgtccttc atcatcgtcg tcggactgct gatggcgtac atcctcgccg gcaatatcgc
     8101 caaacccatc agaatcttag gcaacggcat ggacagggtg gcaaacggag aacttgaaac
     8161 ccgtatctcc caacaggtcg acgaccgcga cgacgaattg tcccatcttg ccatccaatt
     8221 cgacaaaatg gtggaaaaac ttgaaaaact cgttgccaaa gaacgccacc tgctccatca
     8281 cgtctcccat gaaatgcgtt ctccccttgc gcgcatgcag gcaattgtcg gactgattca
     8341 ggcgcagccc caaaaacagg agcaatatct caaacggctg gaaggcgaac tgacccgcat
     8401 ggatacgctg gccggggaac tgttaaccct gtcccgtctc gaaacttcca atatggcttt
     8461 ggaaaaagaa agcctgaaac tcctgccctt cctgggcaac ctggtagaag acaatcaaag
     8521 cattgcccag aaaaacggac aaacggttac cctgtctgcc gacggaaaaa tccccgaaaa
     8581 tacaaccatc cttgccaacg aaagctacct gtaccgcgcc ttcgacaacg tcatccgcaa
     8641 cgccgtcaac tacagtcccg aaggcagcac catcctgatc aacatcggac aagaccacaa
     8701 acactggata atcgacgtta ccgacaacgg ccccggcgtg gacgaaatgc agctcccgca
     8761 catcttcacc gctttctacc gtgcagactc cagtgcgaac aaacccggaa caggactggg
     8821 gcttgcattg acccaacata ttattgaaca gcactgcgga aaaatcatcg ccgaaaacat
     8881 caaaccgaac ggtctgcgga tgcgcttcat cctgcccaag aaaaaaaccg gttccaaaac
     8941 agaaaaaagt gcgaactgac cataatgccg tctgaaccgg cttcagacgg cattgcacaa
     9001 acagttaccc caaaacaaac acacagcggg tgcatctcca acaatcacgc acataccgtc
     9061 cgcaaaggaa tatatcatgt cggcacaaac cgatccgggc tactttttca tgcccaacca
     9121 cattattctg ataggcgcga gcgaacgtcc gtacagcctg ggcgaacgcg tactcagcaa
     9181 cctgctgagt acgccctttc aaggaaaaat cacccccgta aacccgcgcc accacaccat
     9241 agccgggctt cccgcctaca ccagcctcaa caaaatcccc ggcaatgcag acctgattat
     9301 tgccgttacc ctacccgaca gttacgacac cctcttcaaa acctgccgca aaaagcagct
     9361 ccgacacatc atcctcatac aggactggga cagcctgtct gccgcagaac tgcacaccgc
     9421 cgaaactgcc atccgcaaac accacggcaa cggactcaac atcaccgcct gcaccaccgc
     9481 aggcatccaa ctgccctcac tcggactcaa catcagtacc caagacggat acgccgcagg
     9541 ccataccgcc atactgaccg gcaatgccgc cgtcagccgt caaatcgaca acatcctgaa
     9601 caaactccgt caaggcacat ctcgccacat cagcctgcat cccggcatca gccccatcac
     9661 atccgccgat tggctcaacc gcttcggaca cagcctgcac accaaaaccg ccgtcctaca
     9721 ccacaaccct gaagaggatc agcgcaaact gttcagcgca atccgccaat ttacccgcca
     9781 tacgccgctg attctccaca tcacctgccg cacgacagaa accgaccgtg ccgtactgca
     9841 ctgcctcgcc cgacactgca acttcctcat cagtttcaac gccgacgacc tcgaagccgc
     9901 actgcgcgcc caactgtccg acattccacc cctgtcccga ctcgacatcc tgtccgacac
     9961 gcctgccgaa tggctgaacg cgcacgcgcc aaaaaccctc gccctccact ttcccaacct
    10021 tccccaccac atccgcaacg gacacctgac cggcacaccc acaccctcaa tctgccacga
    10081 catcgcctca cgtcagcttg cccgccccga cacccaagcc gtcctgacca tcctcagccc
    10141 ctccggacac gaggattaca aaaaaacagc acgcgccctt atccgcctgt ccgaacagac
    10201 cgccaaaccc ctgctcgtca gcagcccctt ttcagacggc ataacccatt tcgacacccc
    10261 cactcaggca atccgcaccc tttcctaccg caacaccgcc gccgccctga aacaggcaca
    10321 gctcgacatt gcaccgccgc aaccgtgccg tctgaaaaca ccgcaacccc aaaacatcaa
    10381 aaaagccctt gcagcggcaa acccctccct gctcgccgaa gccctgcacc tcccccccta
    10441 ccggcacacc acccataacg ccgtacaatt ccaattcgac agccaccccc tctatggcga
    10501 catcctgacc gcacgctgca acggacaaac cactgccgta ctcccgccgt ttaccacgct
    10561 cgacagccgc caccttgccc gctttgccga actcgacggc acacaaaccc tcgaccagtt
    10621 cctgcacaca ctgaccgtca ttcccgaata ccgccaacac attctcggca tcaccctcaa
    10681 cctcaacggc ggacaataca gcagcgattt cctcttaaag acacccgaaa cacacgacac
    10741 gcccaaacgc aagaacacag gcaaagccgc ccaaaccctc gaacatgccg ccgcaaaaat
    10801 gcagagtgcc gccgcatacc tgaaacacaa aaacccgaca gccgccgaat ttctccgcca
    10861 cacaagcgaa gccgccgcag aactgctcgg cagcaaaacc gaaaccggag cagccgtaca
    10921 caacgtactt gccccctatc ccgcagcata ccccaaaaca ctgtccctaa gaaacaacac
    10981 gaccgttacc attaccccca ttttgcccga agacgcagaa gccaaacagc agttcgtccg
    11041 cagcctcggt cccgaagcac ggtacacacg cttcatgacc cacaccaacg aactgcccgc
    11101 agccacgttg gcacgcctgt gcaaccccga ttaccactgt gaagccgcat ggacggcaaa
    11161 ggatgccgac agcaacatcg tcgccgtcgt ccgccacagc cgcctgaatc gcaacgaatg
    11221 cgaattcggc atcacactgg cggaacatat gcgcggcagc ggactggcac agaaaatgat
    11281 ggaactcatc atccaaaccg ccgcacagca aggctaccgg actatgagcg ccgacattct
    11341 caaaaccaat acccccatga tcaaacttgc tgaaaaatca ggatttaccc tcaaggaatc
    11401 ggacaccgaa aaaaacctgt accgcgcata tctgaacctt gcggcagaca aaacaacaga
    11461 aaaaacaaat aaaaacttgc acaccgacca caaaataacc taaaatcggc agtttccata
    11521 tatccgattt tctcaaaagg actcaaaatg gtagttatcc gtttggcacg cggcggctcg
    11581 aaacaccgcc ccttctacaa cgtcatcgtt actgactcac gcagccgccg cgacggccgc
    11641 ttcatcgaac gcgtaggctt ctacaacccc gtagccaacg aaaaacaaga gcgcgtccgc
    11701 ctcaatgcag accgcctgaa ccactggatt gcacaaggcg cgcaagtcag cgactccgtt
    11761 gcaaaactga ttaaagaaca aaaagccgcc taatccacat ttgccgccat gacagacact
    11821 caaaaccggg tagccatggg ctacatcaaa ggcgtattcg gcataaaggg ctggctgaaa
    11881 attgccgcca acaccgaata ttccgacagc cttttggact accccgagtg gcatttggtc
    11941 aaggacggca aaaccatcag cgttaccctt gaagccggaa aagtcgtcaa cggcgaactc
    12001 caagtcaaat tcgaaggcat aaacgaccgc gacttggcat tctcattgcg cggttacacc
    12061 atcgaaatac cccgtgaagc attcgccccg acagaagaag acgaatacta ctggacagac
    12121 ttggtcggca tgaccgtcgt caacaaagac cataccgttt taggcaaggt aagcaacctg
    12181 atggaaaccg gcgcaaacga cgtattgatg attgacggag aacacgggca gattctgatt
    12241 ccgttcgttt cccaatatat cgaaaccgtc gataccggca gcaagattat tactgccgac
    12301 tggggtttgg actactgatg cttatccagg cagttaccat tttccccgaa atgttcgaca
    12361 gcattacccg ctacggcgta acgggacgcg cgaacagaca gggaatttgg cagtttgaag
    12421 cagtcaatcc ccgaaagttt gccgacaaca gattgggcta catcgacgac cgcccgttcg
    12481 gcggcggccc gggaatgatt atgatggctc cgccgcttca tgcagcaata gaacacgcga
    12541 aagcacaatc ttcccaaacc gcaaaagtca tctacctcag cccccaagga aaaccgctga
    12601 cacaccaaaa agcggcagaa ctggcagaac ttccgcatct gattctgctg tgcggacgct
    12661 atgagggaat agacgaaaga ctgctgcaaa ccagcgtcga tgaagaaatc agcatcggag
    12721 acttcgttgt ttccggcgga gagcttcccg ccatgatgct gatggatgcg gtattgaggc
    12781 tcgtacccgg cgtattgggc gatatgcagt ctgccgaaca ggattcgttc tcaagcggca
    12841 ttttggactg cccccactac accaaaccct tagaatttca aggtatggct gttccggaag
    12901 tattgcgttc cggcaatcat ggcttgatag cggaatggcg gttggaacaa tcgctgcgcc
    12961 gcaccttgga gcgcagaccc gatcttttgg aaaagcgcgt tttaatccca aaggaatccc
    13021 gcctcttaga aaccatccgg caagagcaac gggaaatcca atcataattt aggaaaaaaa
    13081 caatgaacct gattcaacag ctcgagcaag aagaaattgc ccgcctgaat aaagaaatcc
    13141 ccgaattcgc accgggcgac accgtagtcg tatccgtacg cgtcgtggaa ggtacccgca
    13201 gccgtctgca agcctacgaa ggcgttgtca ttgcacgccg caaccgtggt ctgaacagca
    13261 acttcatcgt ccgcaaaatc tccagcggcg aaggcgttga acgtactttc caactgtact
    13321 ctccgaccgt cgaaaaaatc gaagtcaaac gtcgtggcga cgtacgccgt gccaaactgt
    13381 actacctgcg cggtctgacc ggcaaagctg cacgcatcaa agaaaaactg cctgcacgca
    13441 aaggttgatt caaacccgtt ttccccaatg ccgtctgaac cttcagacgg catttcttat
    13501 tgccgcaaca tccgcaacgg aacagcacca aaaagcacac cccttccggc acatcccgaa
    13561 tccccgtccg aaccgaacaa aatttacaga ctaaacgtta tacagtatca tatcagccat
    13621 ataacgataa acgctttacc gccttccctt tcaaaaccgc aaatcatcat gacaccttcc
    13681 cttttactat caggattgac cttccgcctc atccttgccc tgattgccgt atccctttta
    13741 tggggcgttt acttttgggc agtatccgca tgagcatcat tgtcgaaaac ctgaccgtca
    13801 gctaccgccg ccgacctgcc gtgcaccatg tggacattac ttttgaagaa catagtatgt
    13861 gggcggtttt cggtcccaac ggcgcgggga aatccacctt tctcaaatcc ttaatgggat
    13921 tgcagcctat cgatacgggc agcatccggc tggacggatt gacccgtcag aacattgcct
    13981 accttcccca gcagtccgac atcgaccgct cgcagcctat gaccgttttc gacttggcgg
    14041 caatggggct gtggtatgaa atcggttttt tcaaagggat aaataccgct caaaaacaac
    14101 gcgttcacga agccttggag cgtgtaggaa tgcggcagtt tgccggccgc caaattgccc
    14161 acctttccaa cggacaattc cagcgtgtcc tttttgcccg aatgctggtt caaaacgcca
    14221 aattcctact tctggacgaa cctttcaacg ctgttgatgt acggacaacc tacgagcttc
    14281 tcgacgtgtt gcaaaaatgc cattgcggcg gacacgccat catcgccgta ctgcacgatt
    14341 acgaacaagt ccgtgcctac tttcccaata ccctgctgct cgcccgagaa aaaattgcgg
    14401 caggcgcaac cgagaccatt ctgacagaac cctacctcgc ccaagccaac gccaaaatgc
    14461 agcaacagga aagccccgag tggtgcgcgt cataaatgcc gtctgaaacc gaaaaaccat
    14521 gaacctctac gacctgctcc ttgccccctt tgcagaattt gactttatgc gctacgccct
    14581 cgcatccgtc ttctgcctgt ccctcagtgc cgcacccgtc ggcgtattcc tcgtcatgcg
    14641 ccgtatgagc ctgataggcg acgcattgag ccacgccgtc ttgcccggtg ctgccgtcgg
    14701 ctacatgttt gccggcttaa gcctgcccgc catgggtttg ggcggcgtag ccgcaggtat
    14761 gctgatggca ctgcttgccg gactcgtcag ccgcttcacc accctgaaag aagatgccaa
    14821 ctttgccgcc ttttatctca gcagcctcgc catcggcgta gtcctcgtca gcaaaaacgg
    14881 gagcagcgtc gatttgctcc acctcctttt cggctctgta cttgccgtcg atattcctgc
    14941 cctgcagctc atcgccgccg tctccagcct cacgctcatt acccttgccg tcatctaccg
    15001 cccgctcgta ctcgaaagca tcgaccccct gtttctcaaa tctgtcggcg gcaaaggcgg
    15061 gctttggcac gtcctctttc tcgtcctggt cgtcatgaac ctcgtatccg gctttcaagc
    15121 cctcggcaca ctcatgtccg tcggacttat gatgctgcca gccattaccg cccgcctatg
    15181 ggcgaagcac atgggcgcac tcatcctcct atccgttctg acagccctgc tgtgcggctt
    15241 gagcggactg ctcatttcct accacatcga aattccttcc ggtcccgcca tcatcctctg
    15301 ttgcagcgtc ctttatctct tttccgtcat actcggcaaa gaaggcggca ttctgaccaa
    15361 atggctcaaa aaccaccgcc accacaccac ctgaccccgc aagccgcttg aacaaacagg
    15421 cggcttgttt taccataaca gatgttacgt tatatcacag gagaacaatt atgaaacacc
    15481 ccaaactcac ccttatcgcc gcattgctga ccactgccgc aactgccgcc cccctgccgg
    15541 ttgtaaccag cttcagcatt ttaggcgacg tagccaaaca aatcggcgga gagcgcgtat
    15601 ccatacaaag tttggtcgga gccaaccaag atacgcacgc ctatcatatg accagtggcg
    15661 acattaaaaa aatccgcagt gcaaaactcg tcctgctcaa cggcttagga cttgaagctg
    15721 ccgatgtaca acgtgccgtc aaacagagca aagtatccta tgccgaagcg accaaaggca
    15781 tccaacccct caaagccgaa gaagaaggcg gacaccatca cgaccacgat catgaccacg
    15841 aaggacacca ccatgaccac ggcgaatatg acccccacgt ctggaacgac cccgtcctta
    15901 tgtccgccta tgcccaaaac gttgccgaag ccctgataaa ggccgatccc gaaggcaaag
    15961 tttattatca acaacgcttg ggcaactacc aaatgcagct taaaaaactg cacagcgacg
    16021 cacaagccgc atttaacgcc gtccctgccg ccaaacgcaa agtcctgacc gggcacgatg
    16081 ccttttccta tatgggcaaa cgttaccata tcgaattcat cgccccgcaa ggcgtgagca
    16141 gcgaagccga gccttcagcc aaacaagtcg ccgccatcat ccgccaaatc aaacgcgaag
    16201 gcatcaaagc cgtatttacc gaaaacatca aagacacccg catggttgac cgtatcgcca
    16261 aagaaaccgg tgtcaacgtc agcggcaaac tgtattccga cgcactcggc aacgcgcccg
    16321 cagacaccta catcggaatg taccgccaca acatcaaagc cttgaccaac gcgatgaagc
    16381 aataaaaccg tttgattggt ttgaatttga aaaggcaaaa ggccgtctga aaattatagt
    16441 ggattaacaa aaatcaggac aaggcgacga agccgcagat agtac
//
LOCUS       DAXHNP010000029        16268 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.029, whole genome shotgun sequence.
ACCESSION   DAXHNP010000029 DAXHNP010000000
VERSION     DAXHNP010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16268
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.029"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..122)
                     /locus_tag="ACFM5C_000712"
     CDS             complement(<1..122)
                     /locus_tag="ACFM5C_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6068459.1"
                     /translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFG"
     gene            complement(210..2315)
                     /gene="fusA"
                     /locus_tag="ACFM5C_000713"
     CDS             complement(210..2315)
                     /gene="fusA"
                     /locus_tag="ACFM5C_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFC6068460.1"
                     /translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
                     DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
                     RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEADKGTTFTYGDIPAELVETAEEW
                     RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
                     RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
                     IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
                     GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
                     ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKAVKAEYKHAKQSG
                     GKGQYGHVVIEMEPMEPGGEGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
                     VVDVRIRLVFGSYHDVDSSQLAFELAASQAFKEGMRQASPALLEPIMAVEVETPEEYM
                     GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
                     KYSEAPAHIAAAVTEARKG"
     gene            complement(2334..2804)
                     /gene="rpsG"
                     /locus_tag="ACFM5C_000714"
     CDS             complement(2334..2804)
                     /gene="rpsG"
                     /locus_tag="ACFM5C_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFC6068461.1"
                     /translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
                     GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
                     WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
     gene            complement(2922..3293)
                     /gene="rpsL"
                     /locus_tag="ACFM5C_000715"
     CDS             complement(2922..3293)
                     /gene="rpsL"
                     /locus_tag="ACFM5C_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFC6068462.1"
                     /translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTAGVKDRKQARSKYGAKRPK"
     gene            complement(3472..3621)
                     /locus_tag="ACFM5C_000716"
     CDS             complement(3472..3621)
                     /locus_tag="ACFM5C_000716"
                     /inference="COORDINATES: protein motif:HMM:NF016462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6068463.1"
                     /translation="MSAALWHKKLSWKGFTPQINFRYNKINSNMPAFYSRSGKERFVS
                     IEKTY"
     gene            complement(3618..3875)
                     /locus_tag="ACFM5C_000717"
     CDS             complement(3618..3875)
                     /locus_tag="ACFM5C_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068464.1"
                     /translation="MKPRNLFFAGCLLTSATFAEDIGVPVELINVGNRIAMPSEGESL
                     ALLPFAEDVPPVRDAMPSEVPKSAAGGDVRGDRIGMPINIG"
     gene            complement(4167..8342)
                     /gene="rpoC"
                     /locus_tag="ACFM5C_000718"
     CDS             complement(4167..8342)
                     /gene="rpoC"
                     /locus_tag="ACFM5C_000718"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFC6068465.1"
                     /translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
                     TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
                     RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
                     LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
                     IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
                     GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
                     ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
                     LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
                     VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
                     PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
                     HLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEANAEVKEIEDQYRQGLVTNGERYN
                     KVVDIWGRAGDKIAKAMMDNLSKQKVIDRAGNEVDQESFNSIYMMADSGARGSAAQIK
                     QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
                     TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDRILGRVTASDVVDPSSG
                     ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
                     EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
                     KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
                     ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
                     GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
                     ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDG
                     QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
                     MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
                     SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
                     VEQETAETQVTDE"
     gene            complement(8499..12677)
                     /gene="rpoB"
                     /locus_tag="ACFM5C_000719"
     CDS             complement(8499..12677)
                     /gene="rpoB"
                     /locus_tag="ACFM5C_000719"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFC6068466.1"
                     /translation="MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENA
                     FDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRA
                     RIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF
                     FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALG
                     YGNEQILDIFYDKETFYLSSNGVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITA
                     KNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDING
                     VKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNR
                     LFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVE
                     DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQ
                     AESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDG
                     KVTKEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDV
                     ATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSA
                     TAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAV
                     KAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYT
                     SIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKV
                     TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRA
                     QSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLA
                     GLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQ
                     KMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPS
                     RMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDALTD
                     EEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITL
                     YDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVK
                     EIRSLGLDIDLERY"
     gene            complement(12867..13238)
                     /gene="rplL"
                     /locus_tag="ACFM5C_000720"
     CDS             complement(12867..13238)
                     /gene="rplL"
                     /locus_tag="ACFM5C_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFC6068467.1"
                     /translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
                     GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
                     KAEAEDIQKQLEEAGAKVEIK"
     gene            complement(13296..13796)
                     /gene="rplJ"
                     /locus_tag="ACFM5C_000721"
     CDS             complement(13296..13796)
                     /gene="rplJ"
                     /locus_tag="ACFM5C_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFC6068468.1"
                     /translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
                     ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
                     DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
                     AGEEAA"
     gene            complement(14026..14721)
                     /gene="rplA"
                     /locus_tag="ACFM5C_000722"
     CDS             complement(14026..14721)
                     /gene="rplA"
                     /locus_tag="ACFM5C_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFC6068469.1"
                     /translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
                     SFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAA
                     EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
                     GLGIRVDTSSVNN"
     gene            complement(14721..15155)
                     /gene="rplK"
                     /locus_tag="ACFM5C_000723"
     CDS             complement(14721..15155)
                     /gene="rplK"
                     /locus_tag="ACFM5C_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFC6068470.1"
                     /translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
                     ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
                     RAQLEEIAKTKDPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
     gene            complement(15256..15792)
                     /gene="nusG"
                     /locus_tag="ACFM5C_000724"
     CDS             complement(15256..15792)
                     /gene="nusG"
                     /locus_tag="ACFM5C_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFC6068471.1"
                     /translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
                     VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
                     EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
                     FGRETPVELEFSQVEKIN"
     gene            complement(15794..16072)
                     /gene="secE"
                     /locus_tag="ACFM5C_000725"
     CDS             complement(15794..16072)
                     /gene="secE"
                     /locus_tag="ACFM5C_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFC6068472.1"
                     /translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
                     KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
     gene            complement(16188..16263)
                     /locus_tag="ACFM5C_000726"
     tRNA            complement(16188..16263)
                     /locus_tag="ACFM5C_000726"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16228..16230),aa:Trp,seq:cca)
BASE COUNT         4108 a         4209 c         3608 g         4343 t
ORIGIN      
        1 ccgaattttt tagccaaaat agtagtcaaa gcggcagtca gggtggtttt accatggtca
       61 acgtgaccga tggtgccaac gtttacgtgc ggtttgctac gttcgaattt ttccttagcc
      121 atgagctaat tcctttacat taaagatcga ttaaagaaca atgccgtctg aaaaatcatt
      181 tcagcctttc ggacggccta tttgcctgat tagcctttac gggcttcagt tacagcagca
      241 gctatgtgag caggagcttc agaatatttc ttgaactcca tagagtaagt agcgcggcct
      301 tgggttgcag aacgcaggtc ggtcgaataa ccgaacattt ctgccagagg tacttcggca
      361 cggacttttt taccgccgat accgtcatca tccataccca atacaacacc gcgacggcgg
      421 ttcaagtcgc ccattacgtc gcccatgtat tcttccggag tttccacttc aactgccata
      481 atcggctcaa gcagggcagg agatgcttga cgcatacctt ctttaaacgc ttgagaagcg
      541 gccaattcaa atgccaattg ggaagagtcg acatcatggt aagaaccgaa taccagacgg
      601 atacgtacat caactacagg atagccggca acgataccgt taggcaatgt atcgcggata
      661 cctttatcga cagacggaat gaattcgcga ggaatcacgc cacctttaat ttcatcgata
      721 aactcgtaac cttcgccccc cggttccata ggttccattt caatcacaac gtgaccatat
      781 tgacctttac caccggattg tttcgcgtgt ttgtattcag ctttaacggc tttgcggata
      841 gtttcacggt aagccacttg aggtgcaccg atatttgctt ccacaccgaa ttcgcgtttc
      901 atacggtcaa caataatttc caagtgcagc tcacccatac cggaaataat ggtttgaccg
      961 gattcttcgt ctgtacggac acggaaagaa gggtcttctt tagccaagcg gttcagggcg
     1021 atacccattt tctcttggtc ggctttggtt ttcggctcaa cggcaatatg gattaccggc
     1081 tcggggaatt ccatacgttc caagataatc ggcgcgcttt ccgcacacaa ggtttcaccg
     1141 gtagtaacgt ctttcagacc aatagcggct gcgatgtcgc cggcgcgtac ttcttcgatt
     1201 tcagtacggt ctgcggcagt catttgtacc aaacgaccga tacgttcgcg agtgcctttt
     1261 acggagttca atacggtatc gccggatttt actacgcctg agtaaacgcg gataaaggtc
     1321 agctgaccga cgtatttgtc gttcaacatt ttgaacgcca atgcagagaa tttctcttca
     1381 tcgctggctt gacggctgtc ggcttcctcg gtattcgggt tgacaccttg aaccggagga
     1441 atatcggtag gagctggcag caattctaca actgcgtcca acatacgttg aacacctttg
     1501 tttttaaatg cagaaccaca cagcataggc tgaatttcgc ctgccaaagt acgttgacgc
     1561 aacgcgccta cgatttcttc ttcggtcagc tcgtcgccgc ctaagtattt gtccatcagt
     1621 tcttcgctgg cttcggctgc ggcttcaatc atattttgac gccattcttc ggcagtttcg
     1681 accaattcgg caggaatatc gccataggta aaggttgtac ctttatcggc ttcattccaa
     1741 atgatggatt tcattttcaa caaatcaacc acaccgctga agttgtcttc cgcaccaacc
     1801 ggaatgacga taggtacagg gtttgcgcgc aaacgggttt tcatttgctc gacaacgcgg
     1861 aagaagttgg caccctgacg gtccatttta ttgacaaacg ccaagcgcgg cacttggtat
     1921 ttgttggctt gccgccatac ggtttcagat tggggttgaa caccgcccac cgcgcagtaa
     1981 accattaccg cgccgtccaa tacacgcata gaacgctcta cctctacggt aaagtcaacg
     2041 tgtcccgggg tgtcgatgat gttgaagcgg tgctcgggga attgtttcgc cataccggac
     2101 cagtaggaag taacggcagc ggaggtaatg gtaataccgc gctcttgctc ttgttccatg
     2161 tagtcggtag tagccgcacc gtcatgcact tcgcccagct tgtgggtcaa accggtatag
     2221 aacaaaatac gttctgtcgt cgtggtttta cccgcatcga tatgggcgga aataccgatg
     2281 ttacggtaca ggctgatcgg ggtcttacga gccattttat tagcctttca aaattagaaa
     2341 cggaagtgag agaatgcttt gttggcttca gccatacggt gtacttcttc acgttttttc
     2401 aacgcaccgc cacggccttc ggacgcatca atcaattcgc ctgccaaacg caggtccatg
     2461 gatttctcac cacgtttgcg ggccgcatcg cgaacccagc gcattgccaa agccaaacgg
     2521 cgtgaaggac gaacttcaac aggaacttgg tagtttgcac cacctacacg gcggcttttc
     2581 acttccacga taggtttggc gtttgcaatg gcttcgttaa atacttcgat tgctactttg
     2641 ccggtttttt tctcaatctg ttccaacgca ccgtaaacga tacgctcggc aacggatttt
     2701 ttaccgtcaa tcatcaatac gttcatgaat ttggtcaact cgacgctgcc gaatttagga
     2761 tctggcagta cgtcgcgctt ggggacttct ctacgtcttg gcattttaat ttcctttaat
     2821 ctattcagtc gggtctattc ccatgaatac ccaattgagt attcacttac tcggccgttg
     2881 ttcagcttag gcggccgacg tgcctattta agtcccagta attatttagg acgcttagca
     2941 ccgtatttgg aacgggcttg tttacggtct ttaacgcctg cagtatccaa agaaccgcgt
     3001 acagtgtggt aacgcacacc tggcaagtct tttacacgac cgccgcgaat caatacgaca
     3061 ctgtgctctt gcaggttgtg accttcgccg ccgatgtatg aaatgacttc aaaaccgttg
     3121 gtcaggcgga ctttacatac tttacgcaat gcagagttag gttttttagg ggtagtcgtg
     3181 tatacacggg tgcacacgcc gcgtttttgc gggcaggctt ccagtgcggg cactttgttt
     3241 acgtacacgg gcttttgacg gcctttgcgt accaattggt tgatagttgg catattttct
     3301 cgtcctgttg agttaaatac ttgccgacac catgtcggca agagtggaat tatattttta
     3361 ttgcaagtat acagtcaagc ataacgacaa gaagaaagat gattttcttg tttgccgata
     3421 aatatttacc gacatccctc acaatcagtc ggacgactga agaaaatact gtcaatacgt
     3481 tttttctata ctgacaaacc gttccttgcc gctgcgcgaa taaaaggcgg gcatattgct
     3541 gttgatcttg ttgtaacgga aatttatttg gggtgtaaat cctttccacg acagtttttt
     3601 atgccataaa gccgcgctca tccgatgtta atcggcattc ctatccggtc accccgaaca
     3661 tcgccgcctg ccgcgctttt aggaacttca gacggcattg catcgcgaac cggcggtaca
     3721 tcctcggcaa acggcaggag ggcgaggctt tccccttcag acggcatcgc aatccgatta
     3781 ccgacgttaa tcagttcgac aggtacgccg atatcctcgg caaacgtcgc cgaagtcagc
     3841 aggcagcctg caaaaaagag atttctgggt ttcatattta ttttttaaag gaaatgccgt
     3901 ctgaagtttc agacgacatt tgtttaaatg gaaaacatta agacgctact ttttttgacc
     3961 gccgaaacca acatccctag caaagttatt ttggtctccg gacgtaccga cgacacccgc
     4021 cacctcgttg gtctccggcc cgaaaatacc taaggaataa tccacacgcc tcaaaatgac
     4081 gaaaacgctt gtttttgcct taatcagaca aagaaaaacc gcaagcttaa agcttgcggt
     4141 tttgtattga ataaacgcac caaagattat tcatccgtta cttgggtttc agcagtctcc
     4201 tgttccacct cttgccattg ttgatgacgg ctgcggtggt aagtcaaacc ggtaccggca
     4261 ggaatcaggc ggccgacgat gacgttctct tttaaaccgc gcagttcgtc ttgtttgccc
     4321 ataatcgcgg cttcggtcag aacacgggtc gtttcttgga acgatgcggc agaaatgaaa
     4381 ctgtcggtgg acagggaggc tttggtaata cccagcaata cgttttcgta acgtgccggc
     4441 tctttgcctt cttccaaagc tttttcattg gccgccatca catcgccgcg ttcgacctgc
     4501 tctccggtaa tgaacccggt ttcgccggca tccgcaatgt tcacacggcg caacatttga
     4561 cggatgatga cttcgatgtg tttatcagaa atcttcacac cttgcagacg gtaaacctct
     4621 tgcacctctt ggacaatgta gcgtgccagt gcttcgatac cttgcaaacg cagaatatca
     4681 tgcggatcaa cagctccgtc cacgatggtt tcaccgcggt ttaccacttg accgtcgtgt
     4741 accagaattt gtttctcttt ggaaatcaag gtctcgtatg ctacaccgtc cacgtcagta
     4801 acaatcagac gttgcttgcc tttggtctct ttgccgaagg aaacggtacc ggtaatttcc
     4861 gccaacatac cggcatcttt cggcacgcgt gcttcaaaca attcggcaac gcgcggcaga
     4921 ccaccggtaa tgtcgcgggt tttggaagag gcttgcggga tacgcgccaa tacgtcgcct
     4981 ttaccgattt cctgaccttc gcgtacggta atcaccgcac caacggggaa tgccatcgaa
     5041 accggagtgg acgtaccggg aatacagatt tccacgccgt tttcatccaa caattttaca
     5101 gtcggacgca gcagtttgga cgcgctgctg gaacggcgtt taccgtcaat caccaccaaa
     5161 gtggacaaac cggttacatc gtcagtttgt ttcgcaacgg taacaccctc ttccacgttc
     5221 tcaaatttca ccatacctgc atgttcggtg atcatcggac gggtatgcgg atcccaggtt
     5281 gccaaggttt gaccggcttt aatggccata ccgtcttgta ccagcaggat ggcaccgtaa
     5341 ggtactttgt ggcgttcgcg ttcacggccg atatcgtcgt gaatcacgac ttcacaagaa
     5401 cggccgatga caaccaactc gcctttattg ttggcaacat aacgcatttg gctgctgaat
     5461 cgtgccgtac cgttggattt ggcttccact tggctggctg ctgccgcacg ggatgccgca
     5521 ccaccgatgt ggaacgtacg catagtcagc tgggtacccg gttcgccgat tgattgggcg
     5581 gcaatcacac caactgcctc accggcattg accagcttac cacgtgccaa gtcgcgacca
     5641 taacagtgcg cgcacaaacc gtggcgggtt ttacaagtaa tcggcgtacg gactttgact
     5701 tcatcgacac cggattggtc aatcatatcc accagttttt cagtcaacaa cgtaccggct
     5761 tcaaccaagg tctcgccgct tgacggatcg acaacgtcag acgcagtaac acggcccaaa
     5821 atacgatcgc gcaatgcttc aatcacatca ccgccttgta ccactgcctt cataacaaag
     5881 ccgtctgaag taccgcaatc gtcttcaaca acgaccaaat cttgagttac gtctaccaga
     5941 cgacgggtca ggtaaccgga gttcgcggtt ttcaatgcgg tatccgccaa acccttacgc
     6001 gcaccgtggg tcgcaataaa gtattgcaat acggtcagac cttcgcggaa gtttgaggta
     6061 atcggcgttt caataatcga gccgtcaggt ttcgccatca aaccgcgcat acctgacaac
     6121 tgtttaatct gagccgcaga accacgggca ccggagtctg ccatcatata gatggagttg
     6181 aatgactctt gatcgacttc gttgccggca cggtcgataa ctttttgttt ggacaggttg
     6241 tccatcatcg ccttagcgat tttatcgccg gcacgacccc aaatatcgac caccttgttg
     6301 tagcgttcgc cgttggtaac caaaccttga cggtattggt cttcgatttc tttaacctcg
     6361 gcattggctt cagccagcaa ggccgctttt tcttttggaa tttccatatc gtcaacggca
     6421 atggaaatac cgccttttgc cgcaaatccg aaaccggtgt acatcaggtg gtcagcaaag
     6481 ataaccgtat cgcgcaagcc gcacaggcgg aacgatgcgt taatcagttt agaaatttct
     6541 tttttcttca acgctttgtt gacatattca aacggcaggc ctttcggcag gatttcgctc
     6601 aacaatgcac ggccgacggt tgtttcgtaa cggttaacga caggctcaaa ctcacctgct
     6661 tcgtttttca cccattcgcg cagacgtacg gtgatttttg tacccagctc gacctgtttg
     6721 gtatggtatg cgcgatgcac ttctttcaca tcggcaaaca ggctgccttc gcctttggca
     6781 ttgatacggt cgcgggtcat gtagtacaga cccaatacga tatcttggga aggtacaata
     6841 atcggttcgc cgttggcagg agacaatacg ttgtttgaag ccagcatcag cgtgcgtgct
     6901 tccatttgtg cttccaagct caatggaacg tgtaccgcca tttggtcgcc gtcaaagtcg
     6961 gcgttgaacg cggcacacac caatgggtgc aactgaatcg ctttaccttc aatcaagata
     7021 ggttcaaacg cttgaatacc caaacggtgc agggtcggcg cacggttcag cataatcgga
     7081 tgttcgcgga tgacttcttc caagatgtcc catacttccg gtacttcttg ctctaccaat
     7141 tttttcgctg ctttaacggt ggaagccaga ccttgttttt ccaatttgtg gaaaatgaac
     7201 ggtttgaaca gttccaaagc catttttttc ggcagaccgc attggtgcag acgcaggtat
     7261 gggcctacgg taatcacgga acggccggag tagtccacac gtttgcccaa caggttttga
     7321 cggaagcgac cgcctttacc tttaatcatg tctgccaatg atttcagcgg gcgtttgttg
     7381 gcgccggtca tggctttacc gcgacggccg ttatccaaca gcgagtcaac tgcttcttgc
     7441 aacatacgtt tttcgttgcg gacgatgatg tcgggcgcat gcagttccaa cagacgtttc
     7501 agacggttgt tacggttaat aacgcggcgg tacaaatcgt tcaaatcgga agtggcaaaa
     7561 cgaccaccat ccaatggaac caacggacgc aaatcaggcg gcaataccgg cagcacatcc
     7621 ataatcatcc attccagttt cataccggaa cgatggaagg cttccaatac tttcaagcgt
     7681 ttggcgattt ttttgatttt ggtgtcggaa ccggtcgatt ccaactcttg gcgcaggatt
     7741 tcgatttcgc ccgctacatt cagggtacgc agcaattcgc ggataccttc cgcacccatt
     7801 ttggcatcga aatcgtcgcc gtattcgtcc agcttgttgt agtaatcgtc ttcagtcagc
     7861 aattggcggc gttgcagcgg agtcataccg ggatcggtta ccacaaatgc ttcaaagtac
     7921 aatacgcgct cgatgtcgcg caaagtcatg tctaacacca tacccaagcg ggaaggcagg
     7981 gattttaaga accaaatatg tgcgacgggc gcagccaatt cgatatgacc catgcgttcg
     8041 cggcgcactt tggacagggt tacttccacg ccgcattttt cacacgttac gcctttaaat
     8101 ttcaagcgtt tgtattttcc gcacaagcat tcgtagtctt tgaccgggcc aaagattttg
     8161 gcacagaaca aaccgtcacg ctcaggtttg aacgtacggt agttgatggt ttcaggtttt
     8221 ttgacttcgc cataagacca tgagcggatg gtttcgggag aggcaatacc gattttaatg
     8281 gcatcaaact cttcttccat gccggcagtt tgcaacggat taaataagtt caacaaattc
     8341 atttttgctc cttgaaggaa gtatttttac cgcatggcgg attttcgata ttgggaaacg
     8401 gtacttttga tttcagacgg cctaaatgcc gattgcttca ttcttattct gaaaccactt
     8461 tttcagacga ccctgaaagg ccgtctgaaa acttttgttt agtaacgttc caaatcgata
     8521 tccaagccca gtgagcgaat ctctttgacc aatacgttga aggactcggg cataccggca
     8581 tcgattttgt gttcgccttt gacgatgttt tcgtacattt tggtacggcc gttcacgtcg
     8641 tcagacttca cagtcagcat ctcttgcagc gtgtatgccg cgccgtatgc ttccaatgcc
     8701 caaacctcca tctcgccgaa acgttggccg ccgaactggg ctttaccgcc caaaggctgc
     8761 tgggtaacca gactgtacgg accggtagaa cgcgcgtgca ttttttcgtc aaccaagtgg
     8821 tgcagtttca gatagtgcat cacacctact gtaaccttgc ggtcaaatgc ttcgcctgaa
     8881 cggccgtcat acagcgtgat ttgggtttta ctgtcgttga agcccagttt ttcaacctca
     8941 ggatcgtcgc tcggataagc caagttcagc atttcgcgga tttcagactc tttcgcaccg
     9001 tcgaatacag gagaggcgaa agatgcacct ttgcgcaggt tggaggccag ttcgatgatt
     9061 tcttcatcag tcagggcatc caaatcttct ttcttaccgc tgccgttgta gagtctgttc
     9121 aagaactcgc gcaactcgcc tgctttgcgt tgctctttca gcatacggtc gatacgctcg
     9181 ccgatacctt ttgctgccca acccaagtga acttccaaaa tctgaccgat gttcatacgg
     9241 gaaggtacgc ccaatgggtt cagtacgatg tctaccggac ggccgtccgc catgtaaggc
     9301 atgtcttcca ctggcagaat gcgcgatacc acgcctttgt taccgtggcg gcccgccatt
     9361 ttgtcgccgg cttgcagacg gcgtttgatg gcgataaaaa ctttcaccat tttttgtacg
     9421 ccgggttgca attcgtcgcc ttgggtcagt tttttcttct tgatttcgta taactcgtcc
     9481 gcttcttcgc gtttttgttg caggctcact ttaatcagtt ccaactgctt ggccaaatct
     9541 tcatcggtca gacggatatc gaaccaatcg tgcctgctcg gcagacccgc caaatattcg
     9601 gtagtaattt cgctgccttt agccagcttc atcggaccac cattggcttt ttgacccaca
     9661 atcatacgtt cgatacggtc gaatgcgtcg ttgtcgaaaa tacgcaattg gtcgttcaaa
     9721 tccaaacggt agcgtttcaa ctcggaatcg ataatggatt gggcgcgttt gtcgcgttga
     9781 ataccttcac gagtgaagac ttgaacgtcg ataaccgtac cgctcatacc ggtaggcata
     9841 cgcaatgaag tatcttttac gtcagacgct ttttcgccga agatggcgcg caacagtttt
     9901 tcttccggcg tcagctgggt ttcgccttta ggcgttactt tgcctaccaa cacatcgccg
     9961 gcttctactt ctgcaccgat gtaaacgata ccggattcgt ccaagcggtt ttgcatacgc
    10021 tcggacaagt tcggaatatc gcgggtaatg tcttccgcac ccagcttggt atcgcgggca
    10081 acgacattca attcctcaat gtgaatcgaa gtgtaacgat catccgcagc cactttttct
    10141 gaaatcagaa tcgagtcttc atagttgtaa ccgttccatg gcatgaaggc gatggtcatg
    10201 ttttgaccca aagccaattc gcccaagtcg gtagacgcac cgtcggccac caagtcgccg
    10261 cgttgcaaca cgtcgcctgc ttttacggcc ggacgttggt tgatgttggt agattggttg
    10321 gaacgggtaa atttaaccaa gttgtaaata tcgacaccca cttcgccggc agtcgcttcg
    10381 tcgtcatgga cacgaatcac aacacggttg gcatcgacat actcgaccac gccgcctcgg
    10441 cgggcaacga ttgcagtagc agagtcaacg gcaacggaac gctcgatacc ggtaccgacc
    10501 atcggttttt caggacgcaa gcaaggcact gcctgacgtt gcatattcgc acccatcaat
    10561 gcgcggttcg cgtcatcgtg ttccaagaac ggaatcaggg atgctgcaac ggataccact
    10621 tgaccagttg ccacgtccat atattggacg cggtcgggcg ttgccataat ggtttcgcct
    10681 ttttcacgac aggtaaccaa atcgccaatc agattgccat ctgaatccaa atcggcattc
    10741 gcctgtgcaa tcacatagcg gccttcttcg atggcagaca agtaatcgat ttccttggtt
    10801 actttgccgt cgataacgcg gcggtaaggc gtttccaaga aaccgtaatc attggtgcgc
    10861 gcataaacgg acaatgagtt gatcaaaccg atgttcggac cttcaggcgt ttcaatcgga
    10921 catacgcggc cgtagtgggt cggatgcacg tcccgtacct cgaagccggc acgttcgcgg
    10981 gtcaaaccgc ccggacccaa tgcggatacg cggcgtttat gggttacttc agacaagggg
    11041 ttggtctgat ccataaactg actcaattgg ctggagccga agaattcttt aatagcggca
    11101 gaaacaggtt ttgcattaat caaatcgtgc ggcatcaagt tttctgattc cgcctgattc
    11161 aaacgttctt ttacagcacg ttccacacgg gccaaaccgc tgcggaattg gttttcagtc
    11221 agctcgccta ccgaacgtac tcggcggttg cccaagtgat cgatatcgtc aacttcacca
    11281 tggccgttac gcaactcgac caaagtcgca atcgaggcga caatatcttc gacgctcagg
    11341 acataaccgc ctttttcggc agcaccggca aacgtttcgt tcagcaggcg gccgtaccaa
    11401 gagttttgtt gggcttcgga cagtttttgt tcgtatgtgc gcgtattaaa tttcatacgg
    11461 cctacgcggg acaaatcgta gctgtcttca ctgaagaaca agcggttaaa caattgctcg
    11521 accgcctctt cggtgggcgg ttcgcccgga cgcatcatac ggtaaatcgc aacacgcgcc
    11581 gcctgccggc cggcagtctc atccgtacgc aaggtgttgg agatataagc accctgatcc
    11641 aactcattga tgtaaagggt cgtaatttct tttacgccgt tgatatcaaa tttggccaac
    11701 aactcttctg taatttcatc attggcagaa gccaatacct cgccggtttc cgaatcaatc
    11761 agatcggcag ccaatgcttt acccagcagg ctttccggtt ctacatccaa acgggtcagg
    11821 cctgcattgg taatatcacg gatatttttc gcagtaatgc gcttaccttt ggcaaccaat
    11881 acattgcctt ctttatccaa gatatcgacc ttggcagttt cgcctttcag acggcctgcg
    11941 accaaatcgg tttgaacacc gtttgaagac aaatagaacg tttctttgtc gtagaaaata
    12001 tccaagattt gctcattgcc gtagcccaaa gccttcaaca aaatcgttac cggcatttta
    12061 cggcggcggt cgatacggaa atacagcaaa tctttcgggt caaattcaaa atccaaccat
    12121 gaaccgcggt agggaatgat acgggcggag aataacaact tgccggaaga gtgcgtctta
    12181 cctttgtcat gctcgaagaa tacgccgggc gaacggtgca actgggagac aatcacacgc
    12241 tctgtgccgt taatcacaaa agaaccgctc ggggtcatca acggaatttc gcccatatac
    12301 acttcgtttt cacgaacttc ttttaccgtc ggtttagatg cttccttatc caaaatcacc
    12361 aaacggatac gcgcgcgcaa gggggctgca taagtgattc cgcgcaactg acattcggga
    12421 atatcgaaca aaggctcgcc caatgtgtaa tgcacaaact ccaatcgcgc ataaccgtta
    12481 tggctcacaa tcgggaaaat agaattaaat gccgcctgca gaccgtcatc ggtacgtttg
    12541 tcaaaagcat tttccagctg caaaaacttc gcataagaat caatttgggt tgctagcaag
    12601 aaaggaactt ccaaaacatt ttcccgcttt gcaaaactct tacggatacg ttttttctcg
    12661 gtaaacgaat agttcataca cactccgaaa agtaattttc aataataggc cgtctgaaac
    12721 aacggtacgc atcaatctga tatttacatt tatttgcaat gacttgataa aaactatgca
    12781 aataaatgta aacaatactt gatgtttatt ttaagaagca aaataaggct ggcagaaaac
    12841 tgccagcctt cataagaagc atcaaattat ttgatttcga ctttagcgcc tgcttcttcc
    12901 agttgttttt ggatgtcttc ggcttcagct ttagaaacac cctctttaat ggttttaggt
    12961 gcgccgtcaa cgatgtcttt agcttctttc agacccaaac cggtaattgc acggacaact
    13021 ttaatcacgc cgactttttg atcaccggca gaagccaaaa cgacatcaaa ttcggttttt
    13081 tcttcagcat cggcagcacc ggcaccagca ggacctgcaa ctgcaacagc agcagcagaa
    13141 acaccgaatt tttcttcaaa agctttaacc aagtcgttca attccattac ggtcaaagaa
    13201 ccaactgctt ccaaaatgtc ttctttagta atagccatgc tattttactc caaatattgt
    13261 attaaaaaat aattgattaa cagaaacaaa atcgattaag cggcttcttc gccggctttt
    13321 ttctctgcca aagcagccaa accgcgcgca aagcccgata caggagcttg cataacgaac
    13381 aacagtttgg acaacagctc ttcgcggctc ggaatagaag ccaactcagc aacctgagca
    13441 gcattcatta cttcgccatt gtaagaaccg gctttaacga caattttgtc atcttttttc
    13501 gcgaattggt gcaacacttt agcagcagca acagcatctt cagaagcagc gtaaaccaac
    13561 ggaccaacca tttgatcggc caattctgca aatgaagtac cttgcactgc acgacgagcc
    13621 aaagtatttt tcagaacacg caaataaacg ccttctttac gtgcattcgc acgaagctca
    13681 gtcatactgg aaacactgat accgcgatat tcagcgacta cgagggtttg agcgttagca
    13741 attgccgcgc taatttcctc gaccgccact ttcttggttt caatattgag actcaaggtc
    13801 tacctcccac tgtttataaa caggatacca aaacgatatc ccaccagcgc ggtaacctaa
    13861 aaagacatct tacaagcaat cttgcaatgt gtttcaggac taccgtctgc gtagggcagt
    13921 tacgattaaa tcttacgatc cctacggtct tggacatcta cttaatttta agtagcccaa
    13981 attcaagcag cccagaaaac caaactgctt gaaaattcct taagattagt tatttacgct
    14041 tgatgtatca acgcgaatac ccaaacccat ggtgctagac acagcaactt ttttcagata
    14101 ctgaccttta gcggcagcag gcttggcttt aacgatagca tccagcaacg catcaaagtt
    14161 ctctttcaaa tcagcttcag cgaatgaagc acgaccaatc gttgcatgaa caatacctgc
    14221 cttgtcggta cggtactgca cttgacctgc ttttgcattt tttactgctt cggcaacatt
    14281 aggggtaacc gtacctactt tagggtttgg catcagacca cgaggaccca agatggtacc
    14341 caattgacca acaatacgca ttgcatcggg agaagcaata acaacgtcaa agttcagatt
    14401 gcctgctttg atttcagcag ccaaatcttc gaaaccgacg atatctgcac cagcttcttt
    14461 agcagcttct gcatttgcac cttgagtaaa tacagccaca cgggttatct taccggtgcc
    14521 tttaggcaga acgaccgaac cacggataac ttggtcagat ttacgcggat caacgcccaa
    14581 gttgaaagat acgtcaacag actcgtcaaa tttagcagtc gctgcttttt ttaccaaagc
    14641 aattgcttca tcaattgcat ataatttatt ggcttccaca gaagagcgaa gagctttcaa
    14701 gcgtttagat actttagcca ttatacaaca ccctccacat ccaagcccat tgagcgagca
    14761 gaacctgcta tagtacggac agccgcatcc aagtcagcag cagtcaaatc aggatcttta
    14821 gttttagcaa tttcttccaa ctgggcacgg gtcaatttac ccactttgtt ggtcagagga
    14881 ttagaactac ctttttgcaa accggcagcc tttttcaaca agatagaagc tggcggggtt
    14941 ttcatcacaa atgtgaatga tttatctgca aatgcagtaa tcacaaccgg aatcggtaag
    15001 ccaggctcca taccttgggt tgcagcatta aatgccttac aaaattccat aatattcaaa
    15061 ccgcgctgac ccaaagcagg accaaccgga ggagatggat tggctttacc tgcaggaatt
    15121 tgcagtttaa tatagccgat aattttcttt gccacttaac gaactcctaa aaacgggtaa
    15181 gacgcggaac catttccgct ccccaagtta atttttgatt ctatcctctt attgcttttt
    15241 tttcaagtat aaaaatcagt taatcttttc aacctggctg aactccagct caacgggtgt
    15301 ttctctacca aatatctgaa cagacacgcg taacttattc cgttcataat tgacctcctc
    15361 aaccaccccg ttaaaatccg caaacggccc ttcatttaca cgaacctgtt gaccgacctc
    15421 aaattcaact tttggtttcg gcttctctat gccggtctga acctgctgta aaataatttc
    15481 agcctctctc tgactaatcg gcgtaggtct attagccctc cctccaataa aaccggaaac
    15541 acggggggtg ctttttacaa gatgccaaga gtcatctgtc atttccatct caactagcac
    15601 ataaccagga tatgactttc tttcactaat agtcttacga ccattgcgga tatcaacaac
    15661 tttctctaca ggcaccagaa tttgtccgaa ataatctccc atctcctcac gggcaatgcg
    15721 ctcttccaat attcgttgga cattcttctc aaaccccgaa tacgcctgta caacatacca
    15781 ttttttcgac atctcaacct tcccttctca gcaatacatc aaaaaataac cacgaaattg
    15841 ctgtatctgc cgcatagata aatatagaaa gcacagcaac aaacactata acaaatacag
    15901 tcattctgac agcatcttca cgcttaggcc aaaccacctt tttgaattcg gaccaagaat
    15961 ttgagaaata tgcaaaaaac ccttccttac cggaattaga tgcagattct ttatcttgaa
    16021 caaccagttg atccacttta acgttctttt tttcaggcgt atgttctgtc atattattta
    16081 tccatcatag catctgtcta ttctcaatcc atgtaaatgg caagagagtt tactaaataa
    16141 caaatacaaa aaaaattaac cggcacaagg ccggttaatt ttttatttgg caggccaaga
    16201 gggtctcgaa cccccaaccc tcggttttgg agaccgatac tctaccaatt gagctattgg
    16261 cctctaaa
//
LOCUS       DAXHNP010000030        15376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.030, whole genome shotgun sequence.
ACCESSION   DAXHNP010000030 DAXHNP010000000
VERSION     DAXHNP010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.030"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(104..1891)
                     /gene="lpdA"
                     /locus_tag="ACFM5C_000727"
     CDS             complement(104..1891)
                     /gene="lpdA"
                     /locus_tag="ACFM5C_000727"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6068473.1"
                     /translation="MALVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKA
                     TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTAAAPKAEAPAAAPAQEAPKAA
                     APAPQAAQFGGSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV
                     GCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAK
                     SRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAATTGEKKIVAFKNCIIAAGSRVTKLP
                     FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ
                     GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV
                     AAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHE
                     GHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASGRKITKANFPWAASG
                     RAIANGCDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIH
                     PHPTLGESIGMAAEVALGTCTDLPPQKKK"
     gene            complement(1909..2346)
                     /locus_tag="ACFM5C_000728"
     CDS             complement(1909..2346)
                     /locus_tag="ACFM5C_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068474.1"
                     /translation="MGNFLYRGISCQQDEQNNGQLKPKGNKAEVAIRYDGKFKYDGKA
                     THGPSVKNAVYAHQIETGLYDGCYISTTTDKEIAKKFATSSGIENGYIYVLNRDLFGQ
                     YSIFEYEVEHPENPNEKEVTIRAEDCGCIPEEVIIAKELIEIN"
     gene            complement(2440..4038)
                     /gene="aceF"
                     /locus_tag="ACFM5C_000729"
     CDS             complement(2440..4038)
                     /gene="aceF"
                     /locus_tag="ACFM5C_000729"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HFC6068475.1"
                     /translation="MSIVEIKVPDIGGHENVDIIAVEVKAGDTIAVDDTLITLETDKA
                     TMDVPADAAGVVKEVKVKVGDKISEGGVILTVETGASAAEAAPAVAAEAQPAPAAAPV
                     AAGGATVQVAVPDIGGHTDVDVIAVEIKVGDTVAEDDTLITLETDKATMDVPCTAAGV
                     VKAVFLKVGDKVSEGSAIIEVETAGSVAAAPAQAAQAAAPAPTAAAAPAAAPAPSAPA
                     AAKIDEAAFAKAHAGPSARKLARELGVDLGQVKGTGLKGRIVGDDIKAFVKSVMQGGA
                     AKPAAAGASLGSGLDLLPWPKVDFSKFGNVEVKELSRIKKISGQNLSRNWVVIPHVTV
                     HEEADMTELEEFRKQLNKEWEREGVKLSPLAFIIKASVSALKAFPEFNASLDGDNLML
                     KNYFNIGFAADTPNGLVVPVIKDVDQKGLKQISQELTELSKKAREGKLKPQEMQGACF
                     TISSLGGIGGTGFTPIVNAPEVAILGVCKSQIKPVWNGKEFAPRLMCPLSLSFDHRVI
                     DGAAGMRFTVFLAKLLKDFRRITL"
     gene            complement(4188..6851)
                     /gene="aceE"
                     /locus_tag="ACFM5C_000730"
     CDS             complement(4188..6851)
                     /gene="aceE"
                     /locus_tag="ACFM5C_000730"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HFC6068476.1"
                     /translation="MSTQLHDVDPIETQEWLDALSSVLEYEGGERAQYLLENLVKYCR
                     DKGVRMPHGTTTPYLNTVSVENEKGIPGDQNIEHRIRAFVRWNAAAIVLRAGKKDLEL
                     GGHIASFQSAATMYEVGFNHFWKAKGEGEEGDLVFFQGHVAPGIYARAFVEGRLTEDQ
                     LNNFRQEVDGHGLPSYPHPHLLPDFWQFPTVSMGLGPIMAIYQARFLKYLESRGLAKT
                     KGRKVWCFCGDGEMDEPESQGAIALAAREGLDNLIFVINCNLQRLDGPVRGNGKIIQE
                     LEGNFAGAGWNVVKVIWGRRWDRLLAKDKDGILRQRMEECLDGDYQTYKSKDGAYVRE
                     HFFNTPELKALVADMTDEQLWALNRGGHDPQKVYNAYDRAANHADGKPTVILAKTIKG
                     YGMGASGEGQNVAHQAKKMDKASLKQFRDRFDIPVTDEQIESGDLPYLTFAPDTEEYK
                     YLHARRDALGGYLPQRKPTQEVLEVPELSAFDAQLKSSGEREFSTTMAFVRILSTLLK
                     DKKIGKRVVPIVPDESRTFGMEGMFRQYGIWNPKGQQYTPQDKDQLMFYKESVDGQIL
                     QEGINEPGAMADWIAAATSYANSNFAMIPFYIYYSMFGFQRIGDLAWAAGDMHARGFL
                     LGGTAGRTTLNGEGLQHEDGHSHIQADLIPNCVSYDPTFQYEVAVIVQDGLRRMYANN
                     EDVFYYITLMNENYTHPDMPEGAEQDILKGMYLLKAGGKGDKKVQLMGSGTILQEVIA
                     GAELLKADFGVEADIWSCPSFNLLHRDAVEVERFNRLHPLEAEKVPFVTSKLQGHDGP
                     VIAATDYIRSYADRIRAYIPNDYHVLGTDGFGRSDSRANLRRFFEVDRYNVAVAALAA
                     LAEQGKVSKETVQQAIEKYGIKADSAPSWKR"
     gene            7545..9257
                     /locus_tag="ACFM5C_000731"
     CDS             7545..9257
                     /locus_tag="ACFM5C_000731"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFC6068477.1"
                     /translation="MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMP
                     MGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDR
                     DFCMGPTCEEVIADIVRKEINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDA
                     YSFHADYASLQTTYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE
                     DVIAYSDTSDYAANIELAPTLPLKGERTAAQAELTKVHTPNVKTIESLVEFLNIPVEQ
                     TLKSIVVEGENEGEIVLLLLRGDHEFNDIKAEKLAGVRSPLTMASPAAIVEQFGANGG
                     SLGPVSFAGKVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGD
                     ESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVV
                     AAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLD
                     DRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTA
                     LLNG"
     gene            9320..9976
                     /locus_tag="ACFM5C_000732"
     CDS             9320..9976
                     /locus_tag="ACFM5C_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFC6068478.1"
                     /translation="MASVFLEGEAVEVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKP
                     SGSILNSGGTILLPEFSRDVQFECELVLLVGKDSDGTGEGKDILGCVAGYGVGLDLTA
                     RDIQCRLKEKGLPWLKAKGFRHSACVSDFAAAGRIGNPENVLFSLKQNGVLKQRGDTG
                     LMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGAIGAGDNLALELDGLVRASFTVGC
                     "
     gene            complement(9986..10441)
                     /gene="ruvX"
                     /locus_tag="ACFM5C_000733"
     CDS             complement(9986..10441)
                     /gene="ruvX"
                     /locus_tag="ACFM5C_000733"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFC6068479.1"
                     /translation="MHKIPKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDE
                     KFAAIAKLVQEWQPRYFVVGLPVHTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERL
                     SSVYAESLLSEAQVFGKKRKSVLDQVAAQAILHGFFEGGPAECFNGREG"
     gene            complement(10434..10982)
                     /locus_tag="ACFM5C_000734"
     CDS             complement(10434..10982)
                     /locus_tag="ACFM5C_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HFC6068480.1"
                     /translation="MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSP
                     ITMDMIFSATGKNIPMRMQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTS
                     SRDVIENISREGAVDKALISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHR
                     YAAAFAKLGIDPLALFSGAGHA"
     gene            complement(10984..11544)
                     /locus_tag="ACFM5C_000735"
     CDS             complement(10984..11544)
                     /locus_tag="ACFM5C_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HFC6068481.1"
                     /translation="MNRLLLLSAAVLLTACGSGETDKIGRASTVFNILGKNDRIEVEG
                     FDDPDVQGVACYISYAKKGGLKEMVNLEEDASDASVSCVQTASSISFDETAVRKPKEV
                     FKHGASFAFKSRQIVRYYDPKRKTFAYLVYSDKIIQGSPKNSLSAVSCFGGGIPQTDG
                     VQADTSGNLLAGACMISNPIENPDKR"
     gene            11872..13677
                     /locus_tag="ACFM5C_000736"
     CDS             11872..13677
                     /locus_tag="ACFM5C_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFC6068482.1"
                     /translation="MRYKPLLLALMLVFSTPAVAAHDAAHNRSAEVKKQTKNKKEQPE
                     AAEGKKEKGKNGAVKDKKTGGKEAAKEGKESKKTAKNRKEAEKEATSRQSVRKGHEGD
                     KKSKAEHKKAHGKPVSGSKEKNAKTQPENKQGKKEAKGQGNPRKGGKAEKDTVSANKK
                     VRSDKNGKAVKQDKKYREEKNAKTDSDELKAAVAAATNDVENKKALLKQSEGMLLHVS
                     NSLKQLQEERIRQERIRQERIRQARGNLASVNRKQREAWDKFQKLNTELNRLKTEVAA
                     TKAQISRFVSGNYKNSQPNAVALFLKNAEPGQKNRFLRYTRYVNASNREVVKDLEKQQ
                     KALAVQEQKINNELARLKKIQANVQSLLKKQGVTDAAEQTESRRQNAKIAKDARKLLE
                     QKGNEQQLNKLLSNLEKKKAEHRIQDAEAKRKLAEARLAAAEKARKEAAQQKAEARRA
                     EMSNLTAEDRNIQAPSVMGIGSADGFSRMQGRLKKPVDGVPTGLFGQNRSGGDVWKGV
                     FYSTAPATVESIAPGTVSYADELDGYGKVVVVDHGENYISIYAGLSEISVGKGYMVAA
                     GSKIGSSGSLPDGEEGLYLQIRYQGQVLNPSSWIR"
     gene            13797..15281
                     /locus_tag="ACFM5C_000737"
     CDS             13797..15281
                     /locus_tag="ACFM5C_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFC6068483.1"
                     /translation="MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQ
                     SIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSG
                     EFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
                     RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVE
                     SVNTAAKELLKENKGKPLKGLVLDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDG
                     KDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSASASEIVAGALQDHKR
                     AVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERI
                     FESREADLVGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPN
                     PAKDDQLRKALDLVKSPEQWQKSLGLAAKKPVSNKDKKDKKDKK"
BASE COUNT         3684 a         3779 c         4254 g         3659 t
ORIGIN      
        1 ccggaaaaaa tattttaatc cgctgtaaaa tagaaaatgc cgtctgaaca tttcagacgg
       61 catttgctca aataaacctt atcggctgtt tattcagtcg gatttatttt ttcttttgcg
      121 gaggcaggtc ggtacaagta cccaatgcca cttccgccgc cataccgatg gattcgccca
      181 aggtcgggtg cgggtggatg gttttgccga tgtctgccgc gtcgcagccc atttcgatgg
      241 caaggcagac ttcgccgatc atgtcgccac cgttcggacc gacaatgccg ccgccgatga
      301 tgcggccggt ttcggcatcg aaaatcagct tggtaaagcc gttgtcgcaa ccgttggcaa
      361 tcgcacgacc ggaagccgcc cacgggaagt tggctttggt gattttgcgg ccggaggctt
      421 tggcggacaa ctcggtttcg cccacccacg ccacttcggg ggaagtgtag gcaacgcccg
      481 gaatcacgcg cgcgtcgaag taggctttgt ggccggcgca gttttcagcg gcaacgtggc
      541 cttcgtgaac ggctttgtgc gccaacatcg gttgaccgac gatgtcgccg atggcgtaga
      601 tgtgcggcac gttggtacgc atttgtttgt ccacttcgat gaagccgcga tcggttacgg
      661 caacgcctgc tttttccgcg ctgatgagtt tgccgttggg cgcgcggccg gcggcaacca
      721 atacggcatc gtagcgttgc ggctctttcg gtgcatttgc accttcaaag gtaacgtaaa
      781 cgccgtcttc tttcggctcg actgcaacgg ttttggtgtt gaccataatg ttgtcaaaac
      841 ggtattcgtt ttgtttttgc catactttca ccaagtcgcg gtctgcgcct tgcatcaggc
      901 cgtccatcat ttcaaccaca tccaaacgcg aacccagcgt gctgtaaacc gtacccatct
      961 cgaggccgat aatgccgccg ccgataatca gcagtttgcc cggtacttct ttcagagcca
     1021 atgcgccgct ggaatcgatg atgcgcggat cttcaggaat gaaaggcagt ttggttacgc
     1081 ggctgcctgc tgcaatgata cagtttttga aggcaacgat ttttttctcg ccggtagtgg
     1141 ctgcctgttc gtacgcgtcg ccggcagtca gcgacacttc caagtggtgc gggtctaaga
     1201 attgcccgtc gccttggata acgtccactt tacggctttt cgccatacct gccaaaccgc
     1261 ccgtgaggcg ggaaactacg ccgtctttgt aggcgcgaag catatcgatg tcgagttccg
     1321 gctcggggta tttgataccg ttggcagcca agtggcgcac ttcgtcgata acggcggcat
     1381 tgtgcaacaa ggctttggaa gggatacagc cgacgttcag gcaaacgccg cccaaagttt
     1441 tgtaacgttc gacgatggcg actttcaagc cttcatcggc agcggcaaat gcagcggagt
     1501 aaccgccggg accgccaccc aatacgacca cgtcgtactc ggcatcggca gaaccgccga
     1561 attgcgcggc ttgcggagca ggagcagcag ctttaggggc ttcttgcgcc ggggcggcag
     1621 caggtgcttc agctttggga gcggctgccg tgccttcagc ttcaacgacg acaatcaagc
     1681 cgccttcgga gattttgtcg ccgactttga ctttcacttc tttgaccacg cccgcaactt
     1741 cggcaggcac gtccatcgtc gctttgtcgg tttccagggt aatcagggta tcgtcaacgg
     1801 cgatggtgtc tcctacgttc acttcaactg cgataatatc tacattttcg tgtccgccaa
     1861 tgtcgggcac tttcaattca actaaagcca ttatattgac ctttcaactt agttaatttc
     1921 tatcaactct ttagcaataa tcacttcttc aggaatacag ccacaatctt cagctctgat
     1981 tgttacttcc ttctcatttg ggttttctgg atgttcaacc tcatattcaa aaatagaata
     2041 ttgaccaaac aaatccctat ttaaaacata tatatagcca ttttcgatgc cggaacttgt
     2101 tgcaaatttc ttggcaattt ccttgtctgt tgtcgtagat atataacatc cgtcatatag
     2161 acctgtttca atttgatggg cgtaaactgc attcttcaca cttggaccat gtgtagcttt
     2221 accatcatat ttaaacttac catcataacg aattgcaact tcagctttat tacctttagg
     2281 ttttaactgt ccattatttt gctcatcttg ttggcaacta atgcctctat ataagaaatt
     2341 tcccataagt tattaattta aaggttgaat ttaacaccat tactcatcaa tctcaagcaa
     2401 tccaaacatt atcagactgc ttgagaggga tgttttattt tataaggtaa tgcggcggaa
     2461 gtctttcaac agcttcgcca agaatacggt gaagcgcata ccggccgcac cgtcgatgac
     2521 gcggtggtcg aaggacaggc tcaacgggca catcaggcgc ggggcaaact ctttgccgtt
     2581 ccaaaccggt ttgatttggg atttgcacac gcccaagatg gcgacttcgg gagcgttcac
     2641 aatcggcgtg aagcctgtgc cgccgatgcc gcccaagctg gaaatggtaa agcatgcgcc
     2701 ttgcatttct tgtggtttga gcttgccttc gcgggctttt ttggacaatt ctgtcagctc
     2761 ttggctgatt tgtttcaagc ctttttgatc cacgtctttg atgacgggaa caaccaagcc
     2821 gttcggcgta tcggctgcga aaccgatgtt gaagtagttt ttcagcatca ggttgtcgcc
     2881 gtccagagaa gcgttgaatt cggggaaggc tttcagcgcg gaaacggagg ctttgatgat
     2941 gaacgccaga ggagacagtt tcacgccttc gcgttcccat tctttgttca gttgtttgcg
     3001 gaattcttcc agctcggtca tatctgcttc ttcgtgtacg gtaacgtggg gaatcaccac
     3061 ccagttgcga gacaggtttt gaccggagat tttcttaatg cgggacaatt ctttaacttc
     3121 gacattgccg aatttggaga agtccacttt aggccacggc agcaagtcca gaccgctgcc
     3181 caaagatgcg ccggctgcgg caggttttgc cgcgccaccc tgcattacgg atttcacaaa
     3241 ggctttgatg tcgtcgccca cgatacggcc tttcaagccg gtacctttga cttggcccaa
     3301 atccacgccc aattcgcgcg ccagtttgcg tgcggaaggg ccggcgtgtg ctttggcgaa
     3361 agcggcctcg tcgattttgg cagcggcagg tgcagaaggt gcaggcgcgg cggcgggtgc
     3421 ggcggcagca gtcggagccg gtgcggcagc ttgagcggct tgagcaggag ctgctgcgac
     3481 agagccggcg gtttccactt cgataatggc agagccttcg gacactttgt cgccgacttt
     3541 taagaatacg gctttaacga cgccggcagc ggtacaaggt acgtccattg tcgctttgtc
     3601 ggtttccaaa gtaatcagcg tgtcgtcttc ggcaacggtg tcgcccactt tgatttcaac
     3661 ggcgattaca tccacatcgg tatgaccgcc gatatcggga acggctactt gaacggttgc
     3721 accgcctgcg gcaacgggtg cggcggcagg tgcaggttgt gcttcagcgg caacagccgg
     3781 agcggcttcg gcggcggagg caccggtttc aacggtcaaa attacgccgc cttcggagat
     3841 tttgtcgccg actttgactt ttacttcttt cacgacaccg gcagcatcgg caggcacatc
     3901 catcgtggct ttgtcggttt ccagtgtaat cagggtgtcg tcaacggcga tggtgtcgcc
     3961 cgctttaact tctacggcga tgatgtcgac gttttcgtga ccgccgatat cggggacttt
     4021 gatttctacg atactcattt gagttccttt aatcttgttc agttggatgc cgtctgaaag
     4081 ctgcttcagg cggcatcggt acggtttgtc tgctcaaacc attcgggcat tcggttttca
     4141 gacggcctga tgtcggaatg gggcaaacag gccgtctgaa acatcaatca gcgtttccag
     4201 ctaggagctg aatcggcttt gatgccgtat ttctcaatgg cttgttgaac ggtttctttg
     4261 ctgactttgc cttgttccgc caatgcggcc aatgcggcca cggcaacgtt gtagcgatcc
     4321 acttcaaaga agcggcgcag gttggcgcgg ctgtcggagc ggccgaagcc gtcagtaccc
     4381 aagacgtggt agtcgttcgg gatgtaggcg cggatacggt cagcatagct gcggatatag
     4441 tcggtagcgg caataaccgg accgtcatga ccttgcaatt tggaagtaac gaaaggtact
     4501 ttttcggctt ccagcggatg caggcggttg aagcgttcta cctcgacagc gtcgcggtgc
     4561 agcaggttga aggatgggca agaccaaatg tctgcttcca cgccgaagtc ggctttcagc
     4621 agttcggcac cggcaatcac ttcttgcaaa atcgtaccgg aacccatcag ttggactttc
     4681 ttgtcgcctt tgccgccggc tttcagcagg tacatacctt tcaagatgtc ttgttccgca
     4741 ccttcgggca tatccggatg ggtgtagttc tcgttcatca gggtgatgta gtagaacacg
     4801 tcttcattat tggcatacat acggcgcaga ccgtcttgta cgatgacggc gacttcgtat
     4861 tggaaagtcg ggtcataaga tacgcagttc ggaatcaggt cggcctggat gtggctgtgg
     4921 ccgtcttcgt gttgcaggcc ttcgccgttc agcgtcgtac ggccggcagt accgcccagc
     4981 aggaagccgc gcgcgtgcat atcgcccgcc gcccaagcca agtcgccgat acgttggaaa
     5041 ccgaacatag aatagtaaat gtagaacgga atcatggcga agttgctgtt ggcgtagctg
     5101 gttgcagccg caatccagtc ggccatcgcg cccggttcgt taataccttc ttgcaagatt
     5161 tgaccgtcaa cggattcttt atagaacatc agttggtctt tgtcttgagg ggtatattgc
     5221 tgacctttcg gattccaaat accgtattgg cggaacatac cttccatgcc gaaagtacgg
     5281 ctttcgtcgg gaacgatagg tacgacgcgt ttgccgattt ttttgtcttt cagcaaagtg
     5341 gacaggatgc ggacgaatgc catcgtggtc gagaactcgc gttcaccgct ggatttgagt
     5401 tgtgcgtcga atgctgacag ctcgggcact tccaatactt cctgcgtcgg tttgcgttgc
     5461 ggcaggtagc cgcccaaagc atcgcggcgt gcgtgcaggt atttgtattc ttccgtatcg
     5521 ggggcaaaag tcaggtaagg cagatcgccg ctttcgattt gttcgtcggt aaccggaatg
     5581 tcaaagcggt cgcggaattg tttcagggac gctttgtcca tttttttggc ttggtgggca
     5641 acgttctgac cttcgccgga tgcgcccata ccgtaacctt taatggtttt cgccaagatg
     5701 acggtaggtt tgccgtcggc atggttcgct gcgcggtcgt aggcgttgta cactttttgc
     5761 gggtcgtggc cgccgcggtt caatgcccag agttgctcat cggtcatatc ggcaaccaat
     5821 gctttcagtt cgggcgtatt gaagaagtgt tcgcgcacat acgcgccgtc tttggatttg
     5881 taagtttggt agtcgccgtc caaacattct tccatacgtt ggcgcaggat accgtctttg
     5941 tctttcgcca agaggcggtc ccagcggcgg ccccaaatga ctttgacgac attccagccg
     6001 gcgccggcaa agttgccttc caattcttgg atgattttgc cgttgccgcg taccggaccg
     6061 tccaagcgtt gcagattgca gttgatgacg aaaatcaggt tgtccaagcc ttcgcgtgca
     6121 gccagtgcga ttgcaccttg agattcgggt tcgtccattt cgccgtcgcc gcagaaacac
     6181 catactttac ggcctttggt ttttgccaaa ccacgcgatt ccaagtattt caggaaacgc
     6241 gcctgataaa tcgccatgat gggccccaag cccatggata cggtcgggaa ctgccaaaag
     6301 tcgggcaaga ggtgggggtg cggataggaa ggcagaccgt gtccgtccac ttcttggcgg
     6361 aagttgttca gctggtcttc ggtcagacgg ccctcgacga atgcgcgtgc atagatgccc
     6421 ggggcgacgt gaccttggaa gaagaccaaa tcgccttctt cgccttcgcc tttggctttc
     6481 caaaagtggt tgaaaccgac ttcgtacatg gtggcggcag attggaaaga tgcgatgtgc
     6541 ccacccagtt ccaaatcttt cttgccggcg cgcaatacga tggcggcggc gttccagcgc
     6601 acgaatgcgc ggatgcggtg ttcgatgttt tggtcgcccg gaatgccttt ttcgttttca
     6661 accgaaacgg tattcaaata cggggtggtc gtgccgtgtg gcatacgtac gcccttgtcg
     6721 cggcagtatt tgaccaggtt ttccaagagg tattgcgcgc gttcgccgcc ttcatattcg
     6781 aggacggagc ttaacgcgtc cagccactct tgggtttcga tagggtcaac atcgtgtaat
     6841 tgggtggaca tagtatctat cctttatgtt gagtgtttaa tcggcaggga gggtgtagcc
     6901 aaccccttta ttttcgtttg tgaaaaataa taagcaaaaa cgaaaatttc taaatcaaac
     6961 cgaaaaaaat aatttaagtt taatgttttc aaaaaattat aaaagttttg gaaacaaggg
     7021 aaaacttgaa aaaaatgttc gatctgctcc acacgaaatc ctatcagcaa tcgggtctgc
     7081 tggcaaataa ccatgcctgt aaaagcaggt tttatactga agttggcgtt tggtaaggtc
     7141 aagtcttttt gatttcgaaa tattctgttt gattttggcg atattttttc ggaattgtgg
     7201 tatatcgaat cattatgtct ctgtcggcaa ttttcctatt gtagaaaatc tatacacaag
     7261 ctttgtggat aaccgtgttg ataagccacg gcttgtgtta aaaaagtctt acgcaacaaa
     7321 tgtacgctta ttttgattaa aaaataggca catttaaatc tataaaaatc atgtgcttat
     7381 gttcaatatg atgtttctgg tcatgttttt gccgtctgtt atgggatttg tcccgagctt
     7441 ggggcagggg gtgaattttg gaggttggtg caaaacctgc ttttttcgcg ttacaatctg
     7501 cacccgattt acttttgaat ttgcctgttt ggaaaaatac ttttatgaaa gccagccaat
     7561 tctttatctc tactttaaaa gaagcccctg ccgaagccgc gcttgccagc cacaagctga
     7621 tgattcgcgc cggtctgatt aaagccaacg cgtccggcct ttatacttgg atgccgatgg
     7681 ggctgcgcgt gttacgcaaa gtcgaaaacg tcgtgcgcga ggaaatggcg cgtgcgggca
     7741 gcgtggagtt gctgatgccg gtggtgcagc ctgccgagct gtggcaggaa tccggccgct
     7801 gggagtttta cggtaaagag ttgctgcgcc tgaaagaccg ccacgaccgc gatttctgca
     7861 tgggtccgac ctgtgaagaa gtcatcgccg acatcgtgcg caaagaaatc aacagctaca
     7921 aacagctgcc gaaaaacttt taccacatcc aaaccaaatt ccgcgacgaa gtgcgcccgc
     7981 gtttcggcgt gatgcgcgcg cgcgagttcg tcatgaaaga cgcttattcc ttccatgccg
     8041 actacgcctc gcttcagacg acctatgatg ccatgtatga cgcttactgc cgcatcttca
     8101 cccgtctggg cttggcattc cgccccgtcg ccgcagacac cggcagcatc ggcggtacgg
     8161 gttcgcacga gtttcaagtg ttggcggaaa gcggcgaaga tgtgattgcg tacagcgaca
     8221 cttccgatta cgccgccaat atcgagttgg caccgacctt gccgcttaaa ggcgaacgca
     8281 ccgctgctca ggccgagttg accaaagtac atacaccaaa cgtcaaaacc attgagtctt
     8341 tggttgaatt cctgaatatt ccggttgaac aaaccctcaa atccatcgtg gttgaaggcg
     8401 aaaacgaagg cgaaatcgtc ttattactgt tgcgcggcga ccatgagttc aacgacatca
     8461 aggcagaaaa actcgcaggc gtgagatcgc cattgacgat ggcaagtcct gccgcgattg
     8521 tcgaacagtt cggcgcaaac ggcggctcgc tgggtccggt cagctttgca ggtaaagttt
     8581 atgccgattt tgctactgaa aaaggagcgg actgggtcat cggtgcgaac gaagacggct
     8641 accactacac cagcttcaac ttcgggcgcg atgccgccga gcctgaattc gtcgatttgc
     8701 gtaatgtggt cgaaggcgac gaaagccccg acgggcaagg ccgtctgaaa ctcgcgcgcg
     8761 gcattgaagt cggacacgtc ttccagttgc gcgacaaata cacccaagcc atgaacgtaa
     8821 gcttccttga caacaacggc aaatcgcaaa ttatggaaat gggctgctac ggcatcggca
     8881 tcacccgcgt cgttgccgcc gccatcgagc agaataacga cgaaaaaggc atcatctgga
     8941 ccaaagcaat ggcgccgttt gaagtcgtta tcgtgccgat gaactacaaa aaatcagaca
     9001 ccgtacgcga agccgccgac aaaatctatg ccgaattgct ggcggcaggc gcggatgtgc
     9061 tgctggatga ccgcgacgaa cgcgcaggcg tattgctgaa cgattccgag ctgttgggta
     9121 ttccgcaccg catcgtcatc ggcgaccgcg ctttgaaaga aggcaatgtc gaatacgccg
     9181 aacgccgcaa caacgaagcg caggcagttg caatcggaga aattgttgcg cgtgtaacag
     9241 ctttattaaa tgggtaagct tggtcaaatg ccgtctgaaa ataatttcag acggcatttt
     9301 tatttgggga gaaagtgaag tggcttcagt atttttagaa ggagaagcag tcgaggtcgg
     9361 caatattttc tgtatcggca ggaactatgc cgcacatatt gaagagttaa aaaacgaaat
     9421 accttccgaa cctgtggtgt ttatgaagcc gtcaggcagc attttgaaca gcggcggtac
     9481 aatcttgctg cccgagttta gtagggatgt gcagtttgag tgcgaactcg tgctgctggt
     9541 cggtaaggat tcagacggca cgggcgaggg taaagatatt ttgggatgtg tcgcaggata
     9601 tggtgtaggg ctggacctta cggcacggga tatccaatgc cgtctgaagg aaaaagggct
     9661 gccctggctg aaggcaaaag ggttcaggca ttccgcgtgc gtgtcggatt ttgcggcggc
     9721 aggcagaatc ggcaatcccg agaatgtgtt gttttcatta aaacaaaacg gcgtattgaa
     9781 acagcgcggg gataccggtt tgatgattta cccgattcgg gaaattttac acaaactggc
     9841 ggcagattac ggtttgggga aaggggattt ggtgtttacc ggaacgccct ccggcgtggg
     9901 cgcaatcggt gcgggggaca atttggcatt ggagctggac ggcttggtgc gcgcctcttt
     9961 cacggtaggg tgttaaccgc gccgcttaac cctcacgccc gttgaaacat tccgccggac
    10021 cgccctcgaa aaaaccgtgc aagatggctt gcgccgccac ttggtcgagc accgatttgc
    10081 gttttttgcc gaagacctgt gcttccgaaa gcaggctttc ggcatagacg gacgacagcc
    10141 gttcgtcaac ccaatagacg gggagattga acctgccgtt cagcctgcgt ccgaacttgc
    10201 gcgacaggtg cgtcatttca tgtttcgtgc cgtcggtatg cacgggcagt ccgacgacaa
    10261 aataacgcgg ctgccattct tgaaccagct tggcgattgc cgcgaacttt tcatcgttgc
    10321 tgccgccggt aacggtgctc aaaggatggg atagccctaa ttccgcgtct ccttgtgcca
    10381 cgccgatacg cgcttcgccg aagtcgaatg ccagtgccgt tccttttgga attttatgca
    10441 tggccggctc ccgaaaacag ggcgagcggg tcgatgccga gtttggcgaa tgcggcggcg
    10501 taacggtgtt cgtaggggat gtcgaacagg atgtgttcgt cggcgggaac agtcagccac
    10561 gcattgtcgg caagttcgcg ttcgagctgg ccttttcccc agcttgaata gcctatgctg
    10621 atcaaggctt tgtcaaccgc accttcgcgt gaaatatttt caatcacgtc tcgggaagaa
    10681 gttagcgcga tattgtctga aacgccgata ctgctttgcc agttgccgat cggggtatgc
    10741 acgacataac ctcgctcgac ttgcaccggc ccgcccatca tcacgctgtc gtgctgcatc
    10801 cgcatgggga tgtttttgcc ggtggcggaa aaaatcatgt ccatcgtaat cggagagggt
    10861 ttgttgatgg cgatgccgag tgcgccgtct tcatcgtgtt tgcagatata gacgaccgat
    10921 tgtgaaaaaa acgcgtcttc catatcgggc atggcgacga gaaagtggtt ggagaggttc
    10981 atatcagcgt ttgtcgggat tttctatcgg gttggaaatc atgcaggcgc cggcaagcag
    11041 gttgccggaa gtatcggctt gcaccccatc ggtttgcggt atgccgccgc cgaaacagga
    11101 aaccgcgctt aaggaatttt tcggcgagcc ttggatgatt ttatcgctgt acaccaaata
    11161 ggcgaaggtt ttgcgtttgg ggtcgtaata acggacaatc tgccggctct tgaacgcgaa
    11221 gctcgcaccg tgtttgaaaa cttctttcgg tttgcgcacg gcggtttcgt caaaagaaat
    11281 cgaagatgcc gtctgaacgc acgaaaccga tgcgtcggac gcgtcctctt ccaaattgac
    11341 catttccttc aagccgcctt tttttgcata cgaaatataa caggcaaccc cttgaacgtc
    11401 gggatcgtcg aatccttcca cttcgatacg gtcgtttttg cccagtatgt tgaaaacggt
    11461 acttgcccgt ccgattttat cggtttcgcc gctgccgcag gcagtcagca ggacggcggc
    11521 agacagcagt agcagtctgt tcatcaaaat ttccttatcg gttgaatccc cgttttccgt
    11581 gaaggcggca gggcttgctt tgtttggagg ggcgcacgtt cccaaaatcg ggcaacatac
    11641 ggtatgcggc ttaatgtgct accctgtgtg tcggaacaca atatccgttg cggcattgaa
    11701 aatatgatgc acaatataag gctgtttgag ccgattgcaa gtatccgcgc aaagaaggcg
    11761 caagattggg caaacggcat tttcagacgg cataactgac agtataatcc aaacgtccgg
    11821 ctgctttcgt gcagccttca gtattatcca actttttccg aaggtcgaac catgcgctac
    11881 aaaccccttc tgcttgccct gatgctcgtt ttttccacgc ccgccgttgc cgcccacgac
    11941 gcggcacaca accgttccgc cgaagtgaaa aaacagacga agaacaaaaa agaacagccc
    12001 gaagcggcgg aaggcaaaaa agaaaaaggc aaaaatggcg cagtgaaaga taaaaaaaca
    12061 ggcggcaaag aggcggcaaa agagggcaaa gagtccaaaa aaaccgccaa aaaccgcaaa
    12121 gaagcagaga aggaggcgac atccaggcag tctgtgcgca aaggacacga aggggataag
    12181 aaatcgaagg cggaacacaa aaaggcacat ggcaagcccg tgtccggatc caaagaaaaa
    12241 aacgcaaaaa cacagcctga aaacaagcaa ggcaaaaaag aggcaaaagg acagggcaat
    12301 ccgcgcaagg gcggcaaggc ggaaaaagac actgtttctg caaataaaaa agtccgttcc
    12361 gacaagaacg gcaaagcagt gaaacaggac aaaaaataca gggaagagaa aaatgccaaa
    12421 accgattccg acgaattgaa agccgccgtt gccgctgcca ccaatgatgt cgaaaacaaa
    12481 aaagccctgc tcaaacaaag cgaaggaatg ctgcttcatg tcagcaattc cctcaaacag
    12541 cttcaggaag agcgtatccg ccaagaacgt atccgccaag agcgtatccg tcaggcgcgc
    12601 ggcaaccttg cttccgtcaa ccgcaaacag cgcgaggctt gggacaagtt ccaaaaactc
    12661 aataccgagc tgaaccgttt gaaaacggaa gtcgccgcta cgaaagcgca gatttcccgt
    12721 ttcgtatcgg ggaactataa aaacagccag ccgaatgcgg ttgccctgtt cctgaaaaac
    12781 gccgaaccgg gtcagaaaaa ccgctttttg cgttatacgc gttatgtaaa cgcctccaat
    12841 cgggaagttg tcaaggattt ggaaaaacag cagaaggctt tggcggtaca agagcagaaa
    12901 atcaacaatg agcttgcccg tttgaagaaa attcaggcaa acgtgcaatc cctgctgaaa
    12961 aaacagggtg taaccgatgc ggcggaacag acggaaagcc gcagacagaa tgccaaaatc
    13021 gccaaagatg cccgaaaact gctggaacag aaagggaacg agcagcagct gaacaagctc
    13081 ttgagcaatt tggagaagaa aaaggccgaa caccgcattc aggatgcgga agcaaaaaga
    13141 aaattggctg aagccagact ggcggcagcc gaaaaagcca gaaaagaagc ggcgcagcag
    13201 aaggctgaag cacgacgtgc ggaaatgtcc aacctgaccg ccgaagacag gaacatccaa
    13261 gcgccttcgg ttatgggtat cggcagtgcc gacggtttca gccgcatgca gggacgtttg
    13321 aaaaaaccgg ttgacggtgt gccgaccgga cttttcgggc agaaccggag cggcggcgat
    13381 gtttggaaag gcgtgttcta ttccactgca ccggcaacgg ttgaaagcat tgcgccggga
    13441 acggtaagct atgcggacga gttggacggc tacggcaaag tggtcgtggt cgatcacggc
    13501 gagaactaca tcagcatcta tgccggtttg agcgaaattt ccgtcggcaa gggttatatg
    13561 gtcgcggcag gaagcaaaat cggctcgagc gggtcgctgc cggacgggga agaggggctt
    13621 tacctgcaaa tacgttatca aggtcaggta ttgaaccctt cgagctggat acgttgatcg
    13681 gattgccgaa acggtaggct ttatgcaaat cgtgccgata tggtgcgctg ttccgtgaag
    13741 tttgccgtac ctgtattttc cggtttttgg aaatcaagag agaaagttaa agaagaatgt
    13801 cgaaacctgt ttttaagaaa atcgcacttt atactttggg tgcaatcagc ggcgtggccg
    13861 tcagtctggc ggtgcagggt tttgccgccg agaaggacag gcgggataac gaagtcctgc
    13921 cggtgcaatc catccgcaca atggcggagg tttacggtca aatcaaggca aactactatc
    13981 aggacaaacc cgatgccgat ttgtttgaag gtgcgatgaa gggtatggtg gccggtttgg
    14041 atccgcattc cgaatatatg gataaaaaag gttatgccga gataaaggag tccaccagcg
    14101 gcgaatttgg cggcttgggg atggaaatcg ggcaggaaga cggatttgtc aaagtggttt
    14161 cgccgattga ggacacgcct gcggaacggg cgggggtgaa aagcggcgat ttcattgtga
    14221 aaatcgataa tgtttcgaca cgcggcatga cggtcagcga agcggtgaag aaaatgcggg
    14281 gcaagccggg tacgaagatt actttgacgc tgtcgcgcaa aaatgccgac aagccgatag
    14341 tcgtcaacct gacccgtgcc attattaaag tgaaaagcgt ccgccatcac ctgatcgaac
    14401 ccgattacgg ctatatccgc gtgtcgcagt tccaagagcg gacggtcgaa agcgtcaata
    14461 ccgccgcaaa agagctgcta aaggaaaata aaggaaaacc gctcaaaggg ctggtgttgg
    14521 atttgcgcga cgaccccggc gggcttttga ctggcgcggt cggcgtgtcg gcggcatttc
    14581 tgccgtctga agcagtcgtc gtcagcacca agggacgcga cggcaaagac cgcatggtac
    14641 tgaaagccat tcctgaagat tatgtgtacg ggatgggcgg cgattcgttg gcgggcattc
    14701 ctgccgagtt gaaaaccata ccgatgacgg tattggtcaa ttccggttcg gcttccgcgt
    14761 cggagattgt cgcaggtgca ttgcaggatc ataaacgcgc ggtcatcgtc ggtacgcaga
    14821 gcttcggcaa aggttcggtt cagactttga ttcctttgtc caacggcagc gcggtcaagc
    14881 tgacaacggc actgtattat acgccgaacg accgttctat tcaggcgcag gggattgttc
    14941 ccgatgtcga agtaaaagat aaggaacgca tttttgaaag ccgcgaggcg gatttggtcg
    15001 gacacatcgg caatcctttg ggcggcgagg atgtgaacag tgaaaccctt gccgtgccgc
    15061 ttgaaaaaga tgcggataag cccgctgtaa aagaaaaagg taaaaagaaa aaggacgagg
    15121 atttgtcttc aaggcggatt cccaaccctg ccaaagacga ccagttgcgg aaagctttgg
    15181 atttagtcaa gtcgcccgag cagtggcaga agtctttggg gctggcggcg aaaaagccgg
    15241 tttcaaataa agataagaaa gataaaaaag ataagaagta ggttttgacg atgccgtctg
    15301 aaaggatttc agacggcata ttatgtttga aaggacaggt tatgagcgat tttttaccgg
    15361 aatttgaacc gtgcgg
//
LOCUS       DAXHNP010000031        15287 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.031, whole genome shotgun sequence.
ACCESSION   DAXHNP010000031 DAXHNP010000000
VERSION     DAXHNP010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.031"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(122..1447)
                     /locus_tag="ACFM5C_000738"
     CDS             complement(122..1447)
                     /locus_tag="ACFM5C_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HFC6068484.1"
                     /translation="MKKYLFRAALYGIAAAILAACQSKSIQTFPQPDTSVINGPDRPV
                     GIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
                     QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
                     GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSRFPITARTTAIK
                     GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
                     IGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFF
                     RELAGSSNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
                     DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
     gene            1658..2497
                     /gene="efeU"
                     /locus_tag="ACFM5C_000739"
     CDS             1658..2497
                     /gene="efeU"
                     /locus_tag="ACFM5C_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter permease EfeU"
                     /protein_id="HFC6068485.1"
                     /translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
                     ASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMILWMKKAARSMKRQLQ
                     DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
                     AAVIGALIYQGGMRLNLAKFFRWTGAFLIAVAAGLLAGSLRALHEAGIWNALQDIVFD
                     SSKYLHEDSPLGVLLGGFFGYTDHPTQGEALVWLLYLIPVITWFLCGSRPSETLTRKE
                     ELK"
     gene            2494..3660
                     /gene="efeO"
                     /locus_tag="ACFM5C_000740"
     CDS             2494..3660
                     /gene="efeO"
                     /locus_tag="ACFM5C_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HFC6068486.1"
                     /translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGETQSANEGGS
                     VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
                     MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
                     KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFK
                     DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
                     ASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIETKNKALLEKTD
                     TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
     gene            3929..5194
                     /gene="efeB"
                     /locus_tag="ACFM5C_000741"
     CDS             3929..5194
                     /gene="efeB"
                     /locus_tag="ACFM5C_000741"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HFC6068487.1"
                     /translation="MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTA
                     ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
                     GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
                     FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPG
                     AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
                     VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPR
                     DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
                     YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
     gene            complement(5263..5595)
                     /locus_tag="ACFM5C_000742"
     CDS             complement(5263..5595)
                     /locus_tag="ACFM5C_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HFC6068488.1"
                     /translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNKTESAAAEAAEEV
                     RDANGAVLQNGDTIILIKDLKVKGSSMTIKQGTKVKGIRLQEGDHNIACKIDGSAMNL
                     KSEFVKKA"
     gene            complement(5670..7040)
                     /gene="glmU"
                     /locus_tag="ACFM5C_000743"
     CDS             complement(5670..7040)
                     /gene="glmU"
                     /locus_tag="ACFM5C_000743"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFC6068489.1"
                     /translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHEIGGETMLGRVIGTAA
                     ALNPQNICVVVGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLAAEGRTLVLY
                     GDVPLIDVETLETLLEAAGNEVGLLTDVPADPSGLGRIIRDGSGSVTAIVEEKDADTA
                     QKAVKETNTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRA
                     SHLAAGVNNKRQLAELERIFQTGQAQELLKAGVTLHDPARFDLRGRLKHGQDVVIDVN
                     CIFEGEVEIGDNVEIGANCVIKNAKIGANSKIAPFSHLEDCEVGENNRIGPYARLRPQ
                     ARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVHKH
                     KTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVR
                     PEKDKQ"
     gene            complement(7095..7367)
                     /locus_tag="ACFM5C_000744"
     CDS             complement(7095..7367)
                     /locus_tag="ACFM5C_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex protein"
                     /protein_id="HFC6068490.1"
                     /translation="MRKTFLILMTTAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYY
                     QDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR"
     gene            complement(7393..8073)
                     /locus_tag="ACFM5C_000745"
     CDS             complement(7393..8073)
                     /locus_tag="ACFM5C_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HFC6068491.1"
                     /translation="MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSES
                     AASDLRQEYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTKLHGMADTEHTLCR
                     LNGRKAVFSNGPSFYVRAVVGALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDV
                     PPECCIMVDDSADNLHQAKALGMKTVWFGAKSHALSFIDACARDMAQLARYAETLSEH
                     RQTHYNTL"
     gene            8132..9133
                     /locus_tag="ACFM5C_000746"
     CDS             8132..9133
                     /locus_tag="ACFM5C_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6068492.1"
                     /translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
                     NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPGSAP
                     VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
                     GLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
                     SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREV
                     QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
     gene            9227..10075
                     /locus_tag="ACFM5C_000747"
     CDS             9227..10075
                     /locus_tag="ACFM5C_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFC6068493.1"
                     /translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
                     AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
                     AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
                     EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
                     EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
                     IHIINS"
     gene            10101..10586
                     /locus_tag="ACFM5C_000748"
     CDS             10101..10586
                     /locus_tag="ACFM5C_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFC6068494.1"
                     /translation="MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFD
                     QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
                     GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
                     V"
     gene            complement(10688..12256)
                     /gene="msrAB"
                     /locus_tag="ACFM5C_000749"
     CDS             complement(10688..12256)
                     /gene="msrAB"
                     /locus_tag="ACFM5C_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional peptide-methionine (S)-S-oxide
                     reductase MsrA/peptide-methionine (R)-S-oxide reductase
                     MsrB"
                     /protein_id="HFC6068495.1"
                     /translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
                     DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH
                     EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI
                     NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
                     DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
                     TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
                     EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
                     EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
                     AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
                     MDAAGYGALKSKVK"
     gene            12402..13667
                     /gene="ftsY"
                     /locus_tag="ACFM5C_000750"
     CDS             12402..13667
                     /gene="ftsY"
                     /locus_tag="ACFM5C_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFC6068496.1"
                     /translation="MFSFFRRKKKQETPAPEEAQVQETAAKAESEVTQIVENIKEEVE
                     SLTESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVG
                     EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
                     VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPET
                     KEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNN
                     VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
                     MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
                     VPVRYIGVGEGIDDLRPFDARAFVDALLD"
     gene            13912..>15287
                     /gene="pilC"
                     /locus_tag="ACFM5C_000751"
     CDS             13912..>15287
                     /gene="pilC"
                     /locus_tag="ACFM5C_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6068497.1"
                     /translation="MNKTWKRQVFRHTALYTAILMFSHTGGGGAQAQTQTHKYAIVMN
                     GQKLPEVKWGTGYRNLAQKSNERQFTHTSGFGIKKNVTLSFNNTDEVVAQKNGTVVFG
                     AATYLPPYGKVSGFDTAKLTERGKAVDWIRTTHPGLIGYSYENVTCSNNYYNASSGCP
                     ELSYKTQFTFGNQGLKRKTNGRLDIDEDKSRDGSPIYKLQNYPWLGVSFNLSSESLVK
                     SIKYNKIISSFSEDVTQSNGTNSQYKDKNLVYTTGDYQYKNKYSSRYVGQDEHSAVAF
                     YLNAKLHLLDKKQIQNIAQVSELNFGTLRTLIEPTEEWKKKRTNFFQGGNWTFEDKGE
                     VSVKLKLPEVKAGRCVNKNNPNPNAKAPSPALTAPALWFGPVQNGKVQMYSASVSTYP
                     DSSSSQIFLQNLSRKDDTSKPGRYSLKPLSMSEIKSKEPNFTGRQTVIRLDSGVQQIK
                     LQGNEVAN"
BASE COUNT         3390 a         3902 c         4504 g         3491 t
ORIGIN      
        1 aatttgatcc actataattc cgtcaaataa gaaaggaatt ttgtgcctgc ggtatcgcaa
       61 aacttcgcct taatgcgccc gattgcctag ggatgggctt cagatggcat tgttttccgg
      121 tttacgggcg gtattcgggc ttcataccgt tgggtaggag ctgccagaca tatcccgtgg
      181 ttttctgttt gccggcaagt tcgccggctt cgtcgccgta tccccaaaaa taatccacgc
      241 gcaccgcgcc tttaatcgcg ctgccggtat cctgcgccat aatcaggcgg ttgagggctt
      301 tgcgggtaac cggatgggcg gtggcgacaa ataagggcgc acccaaggta atgtagtgcc
      361 ggtcgactgc gccggcatat tcccccatca gcggcgtgcc cagtgcgccg acagggccgt
      421 cattgctgct tccggcaagc tcgcggaaaa agatatagct ggggttttga cccaaaactt
      481 cggcgaggcg ttgcggattt tgccgcatat aagacttaat gccctgcatg gaggtttgtc
      541 cgagtttgag gtagccctta tccgccatat agcgtccgat ggaaacgtag ggatgttcgt
      601 ttttgtcggc atagccgatg cggatgtatt tgccggacgg ggttttcaga cggcccgagc
      661 cttggatgtg cataaaaaaa agttcgacag ggtcttcggc gtaaccgagt atcggggctt
      721 tgccgtcaag cgcgccgccg ttgatttggt tgcgcgtgtg gtaggggagg aagcggcttc
      781 cttcaaacct gcctttgatt gctgttgtgc gcgcggtgat ggggaatcgg gagaggtcgg
      841 cggtatgtgt gccgccggta ttgtcgattg tgccgctgtt ttttcccgtc tgcctgatgc
      901 ggacaagggc ttttccgctc cgcaaaccgg caggcagggg gacggagata aaatcgtcgg
      961 gaataccgta aatcgggaag cgggcttgtg ccgtccgcct gtcgtcgccc ttcagcaccg
     1021 gttcgtaata gccggtaacc gtaccggcaa ggcttccgtt gcctgcaacc tgccacggcg
     1081 tgaaatagcg ttcaaaaaac tgttttgcct gaaaggaatg gacgggggtt tgaaaggctt
     1141 gggcgcacac atcctgccag ccttggcggt ttttcaaatt ggcgcagccg aggcggaagg
     1201 attgcaggct tttggcgaaa tcctgcgccg cccagtgggg cagggacagg tgcggtacaa
     1261 cggtatagac ggccccgccg ccgccgaccg tcgttccggc ggggtcgggg atgccgaccg
     1321 gccggtccgg gccgttgatg acggatgtgt cgggttgcgg aaaggtttgg atgctcttgc
     1381 tttggcaggc ggcgaggatg gcggcggcga tgccgtacag ggcggcgcgg aataggtatt
     1441 ttttcataat ggacaatgtt gccggcagta ataagaaaga tggtttcggg cggcgttgcg
     1501 gcagccgtgg agaggggatt ttaacacagg gcgcagctgc agcctgcgga actttccgcc
     1561 gcgcggtact gcagataaaa ataacttgca tttgtattta caagcaatga aaatattccg
     1621 ataatatatt attcatcatc cttgttcgtt cgcgtttatg ctggtcgctt ttttaattat
     1681 gttgcgcgag ggtattgaag ccgcgctcat tgtcggcatc gttgccggtt ttctgaaaca
     1741 gtccggacat tccaaactga tgcctaaggt ctggttcggg gtcgtccttg cttctttgat
     1801 gtgtttgggg ctagggtacg gcatccattc ggcaacgggc gagattcccc agaagcagca
     1861 ggagttcgtc gtcggcatta tcggtttggt tgccgttgcc atgctgactt atatgatttt
     1921 atggatgaaa aaggcggcgc gttcgatgaa gcggcagctt caggattctg tgcaggcggc
     1981 tttgaaccgt ggcagcggtc aaggatgggc cttggtcggt atggcgtttc ttgccgtggc
     2041 gcgcgaaggt ctggagagtg tttttttcct gcttgccgta ttcaaacaga gcccgacgtg
     2101 gcagatgccg gccggcgcgg tagcgggggt tttggctgcc gccgtgattg gcgcgttgat
     2161 ttatcagggc gggatgcgcc tgaatctggc gaagtttttt cgttggacgg gggcgttttt
     2221 gattgccgtt gccgccggcc tgcttgccgg ctcgctgcgc gcgctgcatg aggcaggtat
     2281 ttggaacgcg cttcaggata ttgtgttcga ctcatcaaaa tatttgcacg aagacagccc
     2341 gttgggcgtg ctgctcggcg gatttttcgg ctataccgac catccgacgc agggcgaggc
     2401 cttggtttgg ctgctgtacc ttattcccgt cataacttgg tttttgtgcg gcagcaggcc
     2461 gtctgaaact ttaacccgta aagaggagct gaaatgagaa aattcaattt gaccgcattg
     2521 tccgtgatgc ttgccttagg tttgaccgcg tgccagccgc cggaggcgga gaaagctgcg
     2581 ccggccgcgt ccggtgagac ccaatccgcc aacgagggcg gttcggtcag tatcgccgtc
     2641 aacgacaatg cctgcgaacc gatggaactg accgtgccga gcggacaggt tgtgttcaat
     2701 attaaaaaca acagcggccg caagctcgaa tgggaaatcc tgaaaggcgt gatggtggtg
     2761 gacgagcgcg aaaacatcgc ccccggactt tccgataaaa tgaccgtcac cctgttgccg
     2821 ggcgaatacg aaatgacttg cggtcttttg accaatccgc gcggcaagct ggtggtaacc
     2881 gacagcggct ttaaagacac cgccaacgaa gcggatttgg aaaaactgtc ccaaccgctc
     2941 gccgactata aagcctacgt tcaaggcgag gttaaagagc tggtggcgaa aaccaaaact
     3001 tttaccgaag ccgtcaaagc aggcgacatt gaaaaggcga aatccctgtt tgccgacacc
     3061 cgcgtccatt acgaacgcat cgaaccgatt gccgagcttt tcagcgaact cgaccccgtc
     3121 atcgatgcgc gtgaagacga cttcaaagac ggcgcgaaag atgccggatt taccggcttt
     3181 caccgtatcg aatacgccct ttgggtggaa aaagacgtgt ccggcgtgaa ggaaattgca
     3241 gcgaaactga tgaccgatgt cgaagccctg caaaaagaaa tcgacgcatt ggcgtttcct
     3301 ccgggcaagg tggtcggcgg cgcgtccgaa ctgattgaag aagtggcggg cagtaaaatc
     3361 agcggcgaag aagaccggta cagccacacc gatttgagcg acttccaagc caatgtggac
     3421 ggatctaaaa aaatcgtcga tttgttccgt ccgttgatcg agaccaaaaa caaagccttg
     3481 ttggaaaaaa ccgataccaa cttcaaacag gtcaacgaaa ttctggcgaa ataccggact
     3541 aaagacggtt ttgaaaccta cgacaagctg ggcgaagccg accgcaaagc gttacaggcc
     3601 tctattaacg cgcttgccga agaccttgcc caacttcgcg gcatactcgg cttgaaataa
     3661 gccgcaagcg ttcagacggt atttggcggc agataccgtc tgaagtttta tagtggatta
     3721 acaaaaacca gtacggcatt gcctcgcctt gccttgcctt gccgtactat ttatactgtc
     3781 tgcggcttcg tcgccttgtc ctgatttttg ttaatccact atatccgcca tatattgcag
     3841 ggcgggattt caacctgccg ctatcggtta atggaaaaac ggcgtgcagg gatacccatc
     3901 ctgctgcacg gatattgaag gaaacaccat gagcaaaaac caacccgcac aaccgaccag
     3961 gcgcactctt tttaaaaccg cgatcgcagc cggagcagtc ggcgcaatcg gaggttatct
     4021 cggcggcaaa aaacagggcg aaaccgccga acgcaccgcc gaaagccaac actcgcccca
     4081 agcctatccc tgctacggcg aacatcaggc aggcatcgtt acgccgcagc aggcgttttc
     4141 gattatgtgc gccttcgacg taaccgcgca aagtgccaag cagctggaaa acctgttccg
     4201 cacgctgacc gcccgcatcg agtttctcac ccaaggcggc gaataccaag acggcgacga
     4261 caaacttccg ccagccggca gcggcatttt gggcaaagcc ttcaaccccg acgggttgac
     4321 cgttaccgta ggggtgggca gcagcctgtt tgacggtcgg ttcggactca aagacaaaaa
     4381 accgattcat ttgcaggaaa tgcgcgactt ctccaacgat aagctgcaaa aaagctggtg
     4441 cgacggcgat ttgagcctgc aaatctgtgc cttcaccccc gaaacctgcc aagccgccct
     4501 gcgcgacatc atcaaacaca ccgtccaaac cgccgttatc cgttggagta tcgacgggtg
     4561 gcagcccaaa tccgaacccg gcgcgatggc ggcgcgcaac ctgttgggct tcagggacgg
     4621 cacgggcaac cccaaagttt ccgaccccaa aactgccgac gaggttttgt ggacgggggt
     4681 ggccgccaac agcctcgacg aaccggagtg ggcgaaaaac ggcagctatc aggcagtccg
     4741 ccttatccgc cactttgtcg agttttggga caggacgccg cttcaagagc aaaccgacat
     4801 tttcgggcgg cgcaaataca gcggtgcgcc gatggacggc aaaaaagaag ccgaccaacc
     4861 ggattttgcc aaagaccccg agggtgatat cacgcccaaa gacagccata tacgcctggc
     4921 gaatccgcgc gatcccgaat tcctcaaaaa acaccgcctc ttccgccgcg cctacagcta
     4981 ttcgcgcgga ctcgcctcaa gcggacagct tgatgtcggg ctggtgttcg tctgctatca
     5041 ggcaaacctt gccgacggat tcatcttcgt gcaaaacctc ctcaacggcg aaccgctgga
     5101 agaatacatc agccccttcg gcggcggcta tttcttcgtc ttgcccggcg tggaaaaagg
     5161 cggctttttg gggcaagggc tgctgggcgt ataaatccgc catataaaaa acgccgtctg
     5221 aatccgataa ggggttcaga cggcatttta ctgtttgggc ggtcaggctt ttttgacgaa
     5281 ttcagatttt aaattcatcg cgctgccgtc gattttgcag gcgatgttgt gatcgccttc
     5341 ctgcaggcgt atgcctttga ctttcgtacc ttgtttgatc gtcatcgagc tgccttttac
     5401 cttgaggtct ttgatgagga tgatggtgtc gccgttttgc agcaccgcgc cgttggcatc
     5461 gcgcacttct tcggcggctt cggctgcggc ggattcggtt ttattccatt cgtgggcgca
     5521 ttcggggcag atgtattgtc cgccgtcttc gtaggtgtat tcggaggcgc attgcgggca
     5581 agggggtaat gacatggttt gccgtcctta tcggatgttt gttttggggt gccgtctgaa
     5641 acctgaaacc ggcttcagac ggcatagctt tattgtttgt ctttttcagg acgcacccag
     5701 ccttcgatga cggtttggcg ggcgcgggcg agggcgagtt tgttgtcttc gacattgcgg
     5761 gtaatcgtgc tgcccgcgcc tgtggttact ttgttgccga gggtaacggg ggcgactagg
     5821 acgcagtttg aaccgatgcg cacttcgtcg ccgatgacgg ttttgtgttt gtgcacgccg
     5881 tcgtagttgg caataatcgt accggcgccg aagttggttt tgctgccgac ttcggcatcg
     5941 ccgatgtagg taaggtggtt ggctttggtg cctttgccga tggcggcgtt tttgatttcg
     6001 acgaagttgc cgacgtgtac gtcgtctgca aggcgggctt gcggacgcag gcgggcgtac
     6061 gggccgattc ggttgttttc gccgacttcg cagtcttcga ggtgggagaa gggggcgatt
     6121 ttgctgtttg caccgatttt ggcgtttttg atgacgcagt ttgcgccgat ttcgacgttg
     6181 tcgccgattt cgacttcgcc ttcaaagata cagttcacat caattacgac atcctgtccg
     6241 tgtttcagac ggcctcgtaa atcgaaacgt gccgggtcgt gcagggtaac gcctgctttg
     6301 agcaattctt gcgcctgtcc ggtttggaag atgcgttcga gttcggcgag ctggcgtttg
     6361 ttgttcacgc cggcggcgag gtgggaggcg cggacttgga cgggatgaac tttaataccg
     6421 tcggcaacgg ctttggcgat gaggtcggtc aggtagtatt cgccttgggc attgttgctg
     6481 gaaaggctgt tcagccagtt ttccagtttg gcgttgggca ggacgaggat gccggtgttg
     6541 gtttctttca cggctttttg ggcggtatcg gcgtcttttt cttcgacaat ggcggttacg
     6601 ctgccgctgc cgtcgcggat gatgcgcccc aaacctgacg ggtcggcggg cacgtcggtc
     6661 aacagcccga cttcgttgcc tgcggcttcg agcagggttt cgagggtttc aacgtcaatt
     6721 aaaggaacgt cgccgtacaa caccagcgtg cggccttcgg cggcaaggtg gggcagggcg
     6781 gttttgacgg cgtggccggt gccgagctgt tcggtttgtt caacccagac gacatcgcgt
     6841 ttgacggtgt ctaaaacttg ctctttgccg tggccgacga cgacgcagat gttttgcgga
     6901 ttcagcgcgg cggcggtgcc gataacgcgc ccgagcattg tttcgccgcc gatttcgtgc
     6961 aaaaccttgg gcattttgga atacatgcgc gtgcctttgc cggcggcgag gatgacgatg
     7021 tttaaagtgt tttgcggcat agcgttttcc tgtgcaatgc cgtctgaaag ggcttcagac
     7081 ggcatagggt gggtttatcg gttttgaaat ttgggctttt gccagtgttg gcgatgctct
     7141 tcgtcggcgt tgttgccggt ttggttgggt aacacggcat ggcgttcggg acggtattgg
     7201 ttgtagttca tatttttcga gtagctgccg tcttggtaat aaacgggcgt gccggcggga
     7261 tatttttgac ggacggcggt cttgccgttg ccgtcttgat aagtttccca cgcgcagccc
     7321 gacaaaaggg cggcggtggt catcaggata aggaaggttt tacgcatggc ttttctttcg
     7381 tattttcagg atttagaggg tattgtaatg agtttggcgg tgttctgaca aagtttctgc
     7441 ataccgagcc agttgcgcca tatcgcgtgc gcaggcgtcg ataaaggaca gcgcgtggga
     7501 ttttgcaccg aaccagacgg ttttcatgcc caatgctttt gcctgatgca ggttgtccgc
     7561 gctgtcgtcc accataatgc agcattcggg cggtacgtcc aaaaggcggc agacattgag
     7621 atacgcttgc ggattgggtt tgtacagcag tccgaaatca tccgtgccga acagtgcgtc
     7681 gaaacggttt tccaaaccga gtgcgccgac aacggcacgg acgtaaaacg acggaccgtt
     7741 ggaaaaaacc gccttgcgcc cgttcagacg gcatagggtg tgttccgtat ccgccatgcc
     7801 gtgcagcttg gtcaggattg catcgatcgg atggctttcg cgtaaaaatt cggcgatgtc
     7861 gatttcggga tggtggattt gcagtccggc gagcgttgcg ccgtagcggt gccaatattc
     7921 ctgacgcagg tcggacgcgg cggattcgga gagtttgagg cggcgtgcca tatagcgtgt
     7981 catagcgcgg ttgatgagtg tgaagatgcc tgcgtcggca tcgtgcagcg tgttgtcgag
     8041 gtcgaacagc cacacggtcg ggttttcttg cattttgaac cgtgaaaatt tgttagaatg
     8101 ttattttaca gcgaatagag gaggactcgg aatgaaacgg aaaatttggc tgctgccgct
     8161 gctggcggtt tcggcatacc tgcaggcgca gacggaagtc aggctggcgg tgcataagtc
     8221 gttcagcctg cccaaagggc tgattgcgcg cttcgagcgg gcaaacgatg cgaaggtgtc
     8281 gattattcag gcgggcggcg cgaacgaaat gctcaacaaa ctgattttga gccgcgccaa
     8341 cccgatcgcc gacgcggtgt acggcttgga caacgccaat atcggcaagg cgcgggaaat
     8401 gggcattttg gcggcggcgc aacccggatc cgcccccgtc gcggtcgggc tgccttcggc
     8461 tttggcggtc gattacggct atgtgtccat caattacgac aaaaaatggt ttgaaggcaa
     8521 aaagcttcct ctgccgcaaa ccctgcagga tttgacccgc cccgaatata aaaacctatt
     8581 ggtcgtgccg tctcccgcca cgtcgtcccc ggggctgggc ttcctgatgg cgaacatcag
     8641 cggtctgggc gaagaaggcg cgttcaaatg gtgggcacag atgcggcaga acggcgtgaa
     8701 ggtcgccaaa ggctggagcg aggcgtatta caccgacttt tcgcacaacg gcggcgcgta
     8761 tccgctggtg gtcggttatg ccgccagccc ggcggcggaa gtgtattttt ccaaaggcaa
     8821 atacagcgag ccgccgacgg gcaacctgtt tttaaaaggc ggcgtattcc gccaggtcga
     8881 aggcgcggcg gtcttgaagg gcgcgaaaca gccggaattg gcggcaaaac tggtgcaatg
     8941 gctgcaaagt cgggaagtgc agcaggcggt tccgtccgaa atgtgggttt accccgccgt
     9001 caaaaacacg cgcctgcccg acgtgttccg cttcgcccaa gccccgacgc acaccaccgc
     9061 ccccgcgcag cgcgatattg atgcgaacca gcgcggatgg gtttcccgtt ggattagaac
     9121 ggttttgaaa taaaacaaac ataccgcccc gcagggcttc atacggcatt tttacacctg
     9181 tgccgattac gccgcacggg gcggatgttc gatcaagagg aaaacaatgg acttcaaaca
     9241 atttgatttt ttacacctga tcagtgtttc cggttgggag catctggctg aaaaggcgtg
     9301 ggcgttcggg ctgaaccttg ccgccgcgct gcttattttt ttggtcggaa aatgggcggc
     9361 gaaacgcatt gtcgccgtga tgagggcggc gatgacgcgc gcgcaggtcg atgccacgct
     9421 gattagtttt ttgtgtaatg ttgccaatat cggcttattg attttggtga ttattgccgc
     9481 attgggcaga ttgggcgttt ccacaacatc cgtaaccgcc ttaatcggcg gcgcgggttt
     9541 ggcggtggcg ttgtccttga aagaccagct gtccaatttt gccgccggcg cgctgattat
     9601 cctgttccgc ccgttcaaag tcggcgattt tatccgcgtc ggcggttttg aaggatatgt
     9661 ccgagagatt aaaatggtgc agacttcttt gcggacgacc gacaacgaag aagtcgtgct
     9721 gcccaacagc gtggtgatgg gcaacagcat cgtcaaccgt tccacactgc cgctgtgccg
     9781 cgcccaagtg atagtcggcg tcgattacaa ctgcgatttg aaagtggcga aagaggcggt
     9841 gttgaaagcc gccgtcgaac accccttgag cgttcaaaac gaagagcggc aggccgccgc
     9901 ctacatcacc gccttgggcg acaatgccat cgaaatcaca ttatgggctt gggcaaacga
     9961 agcagaccgc tggacgctgc aatgcgactt gaacgaacaa gtggtcgaaa acctccgcaa
    10021 agtcaatatc aacatcccgt tcccgcaacg cgacatacac atcatcaatt cttaaacgcc
    10081 gtctgaaaga ggagtgggaa atggacgcgc tgcacaccat cgcccgaaac ctgacgaaaa
    10141 aacgtcaaac cgtaagctgt gccgaatcct gcacgggtgg gctgcttgcc gccgtattca
    10201 caagcgttgc aggcagttcg caatggttcg atcaaagttt tgtaacatac agcaacaaag
    10261 ccaaagaaga ccgcttgggc gtgttgcccg aaaccctgct cgaacacggc gcggtcagcc
    10321 gccaaaccgt ctatgagatg gcgcgcggcg cgaaagccgt ggcgcaggcg gattacgccg
    10381 tcggtatttc cggcatcgcc ggtccgggcg gcggcagcga aagcaaaccc gtcggcacgg
    10441 tttggttcgg gtttgccttt ccgggcggaa gttgcgaagc aatgcgccgt tttgacggca
    10501 accgcgaatc cgtccgcgcg caggcggtcg ccttcgcgtt ggaacggttg gcggggctga
    10561 ttgaaaacgg cggcgatgcc gtctaaacaa aatctccgtc tggacaaaat ccccgccgga
    10621 taaaaaatac cgtctgaaac gttgcaggtt tcagacggta ttttgtcggg ttaggcggcg
    10681 gtgcggctta tttcacttta ctcttcaacg cgccgtagcc tgccgcgtcc atttgttcca
    10741 gcgggatgaa tttcaagctc gcgccgttga tgcagtagcg cagtccgcct ttgtcgcgcg
    10801 ggccgtcggg gaagacgtgc cccaagtgtg agtcggcggc gtggctgcgc acttcggtgc
    10861 ggcgcatgtt gtagctgaaa tcatcgtgtt cggtaacgga ttttgcatca atcgggcgcg
    10921 tgaagctcgg ccagccgcag ccggaatcat atttgtcggc ggagctgaac aaaggttcgc
    10981 cgctgacaac gtccacataa atgccgggtt tgaacaaatg gtcgtattcg tggctgaagg
    11041 catattcggt cgcgctgttt tgggtaactt ggtattgctc ttcggtcagg gtgcgtttga
    11101 gttcggcgtc actcggtttt ttatacgttg ccgcgtcgaa gcctttgcct tgcggtgcgg
    11161 tcttggtttt gcccggcagc ggttcgtcgg ctttgcggat atcgatgtgg cagtagccgt
    11221 tggggttttt aatcaagtag tcctgatggt attcctcggc atcgtagaag tttttcagcg
    11281 gctcgttttc aacaacgagg ggcagttggt atttttgctg ctcgcgtttg agggcggcgg
    11341 cgatgacggc tttttcggcg gggtcggtgt agtacacgcc gctgcggtat tgcgtaccgg
    11401 tgtcgttgcc ctgtttgttg aggctggtcg gatcaacgac gcggaagaaa tattgcagga
    11461 tgtcgtctag gctgagtttg tcggcatcgt aggtcacttt gacggtttcg gcgtggcccg
    11521 tatggcggta ggacacgtct tcatagctcg gatttttcgt gttgccgttg gcgtagccgg
    11581 ataccgcgtc aaccacgccg tcgatgcgtt ggaaataggc ttccaagccc cagaagcagc
    11641 cgccggcgag gtaaatggtg cgtgtgttca tgatttttga atcctttttc tgagtgtcgg
    11701 gtttgtagaa cgaatgtttc aagctgccca aatcggcatt cgggtcgcgg attaacgcca
    11761 acgcctgcgc ttcgttgatg ctgcctttga cgatgcgctg cacgtcgccg tctttaccga
    11821 ttaacgccca cgaggggtaa acgctgatat tcaggctttg ggcgatggtg ccgccgttgt
    11881 cggttacgac gggcagcttg ggataattca aaccggcata ccatttttgg aagtcgccgt
    11941 cttttttctc gtgcaaaaag cccggagacg cgacggtaat caggttggcg gagctgaatt
    12001 ttgcatcttg cgcccatttt tcggtctgtc ccaattcgga cagacacaaa ggacaccagc
    12061 ttgcccaaaa tttaatcagc gtcggtttgt cttttttcaa gtaaacactg gcggggcggt
    12121 tgtctgcggt tttcaaagtg gataaagtgt gcggcacggt cgcggctccg gcatcgacga
    12181 ttttgggcga acaagcaccc agcgcaagca ggcagccgaa cttggcgcaa agggaaaaga
    12241 aagtacggtg tttcatttta atgtttcctg tgtggacggt ttgcatgatt agacgtttga
    12301 gatgccgaaa ccttacagcc cggattttca gacaaccttg ccgcgcaaaa tacgctacaa
    12361 tacaccctat ttcaagtttc taaaattaaa aggaaaattc aatgttcagc ttcttccgtc
    12421 gcaagaaaaa acaggaaacg ccggctcccg aggaggctca agttcaggaa actgcagcaa
    12481 aagcagaatc cgaagttact caaatagttg aaaatattaa agaagaagtc gaatctttaa
    12541 cggaaagcgt caaagggcag gtcgaatcgg ctgttgaaac cgtcagcggt gcggttgaac
    12601 aggtaaagga aaccgttgcc gagatgctgt ctgaagcaga ggaagcggcg gaaaaagcag
    12661 cggaacaagt cgaagcggca aaagaagccg ttgccgaaac cgtcggcgag gctgtcgggc
    12721 aagttcaaga agccgttgcg acaactgaag aacacaagct cggttgggcg gcgcgtttga
    12781 aacaaggttt gaccaaatcg cgcgacaaaa tggcgaaatc gctggcgggc gtgttcggcg
    12841 gcggacaaat cgacgaagat ttgtacgaag agctggaaac cgtgctgatt accagcgata
    12901 tgggcatgga agccaccgaa tacctgatga aagacgtgcg cgaccgcgtc agcctcaaag
    12961 ggctgaaaga cggcaacgaa ttgcgcggcg cgctgaaaga agccttgtac gacctgatta
    13021 agcctctaga gaaaccgctg gttttgcccg aaaccaaaga gccgtttgtc atcatgcttg
    13081 ctggcatcaa cggcgcgggc aaaaccacat ccatcggcaa actcgccaaa tatttccaag
    13141 cgcagggcaa atctgtgctg cttgccgccg gcgatacttt ccgcgccgcc gcgcgtgagc
    13201 agcttcaagc ttggggcgaa cgcaacaacg taaccgtgat ttcgcaaacc acgggcgatt
    13261 ccgccgccgt gtgcttcgat gccgtccaag ccgccaaagc gcgcggcatc gacattgtgc
    13321 tggccgacac cgccggccgc ctgcccacgc agcttcactt gatggaagaa atcaaaaaag
    13381 tgaaacgcgt gctgcaaaaa gccatgcccg acgcgccaca cgaaatcatc gtcgtgcttg
    13441 atgccaatat cggtcaaaac gccgtcaacc aagtcaaagc ctttgacgac gcattggggc
    13501 tgaccggttt aattgttacc aagctagacg gcacggcaaa aggcggcatc ctcgccgcgc
    13561 ttgcctccga ccgccccgtc cccgtccgct atatcggcgt gggcgaaggc atagacgatt
    13621 tgcgcccgtt tgacgcgcgc gcgtttgtgg acgcactgct ggattgagcc gaaatgccgt
    13681 ccgaaaacag cagaccgatg ccgtcattcc cgcgcaggcg ggaatccaga ctgtcgggca
    13741 tctgcagcgg tttgctaaaa aacgctttac cgtgatcagt gtgcaaagtt aaaatgggga
    13801 ggtaagcttt tcaaccagca attcggcggg cgcggaatcg ggcggtttac cgaacctcgg
    13861 cgttcgcggc gcgccgcccc gtcccgtgaa ggcaaactca aggaataaaa gatgaataaa
    13921 acttggaaac ggcaggtttt ccgccatacc gcgctttata ccgccatatt gatgttttcc
    13981 cataccggcg gggggggggc gcaggcgcaa acgcaaacgc ataaatacgc tattgtaatg
    14041 aacggacaaa agctgcccga ggtaaagtgg gggactggct atagaaattt ggcgcaaaaa
    14101 agcaatgaac gccaatttac ccatacgagt ggtttcggca tcaaaaaaaa cgtaacttta
    14161 tcattcaata ataccgatga agttgttgct caaaaaaacg gtactgtcgt tttcggcgcg
    14221 gcgacctacc tgccgcccta cggcaaggtt tccggttttg ataccgctaa gctgaccgag
    14281 cgcggcaaag ccgttgattg gattcgtacg acccacccgg ggttgatagg ctacagctac
    14341 gaaaatgtca catgcagcaa taactactac aacgccagca gcggctgtcc tgaacttagc
    14401 tataaaaccc aatttacctt tggtaatcaa gggttgaaaa gaaagacaaa cggcaggctg
    14461 gatatagacg aagacaaaag ccgcgacggt tcgcccattt acaaattgca gaattatccc
    14521 tggttgggcg tgtctttcaa tttgagcagc gagagcctcg tcaaatcaat aaaatacaat
    14581 aaaattatat cttcttttag cgaggacgtg acgcagagca atggtacgaa cagccaatac
    14641 aaagacaaaa acctcgttta tacgacaggc gattaccagt ataagaataa atattcttcc
    14701 cgttatgtcg ggcaggacga acactccgcc gtcgcctttt atctgaacgc caaactgcac
    14761 ctgctggata aaaaacaaat ccaaaatatc gcgcaagtca gtgaacttaa ttttggtacg
    14821 ttgagaacgc tcatcgagcc gacggaagag tggaaaaaaa agaggacgaa cttttttcaa
    14881 ggtggtaatt ggacgtttga agataaagga gaagtcagcg tcaaactcaa attgccggaa
    14941 gtcaaagcag gccgctgcgt caacaaaaat aaccccaatc ccaatgccaa agccccctcc
    15001 cccgcactga ccgcccccgc gctgtggttc ggacctgtgc aaaatggtaa ggtgcagatg
    15061 tattccgctt cggtttccac ctaccccgac agttcgagca gccaaatttt cctgcaaaac
    15121 ctttcccgca aggatgacac aagcaaaccg ggccgctatt ccctcaaacc cttgagtatg
    15181 tcggagatta aaagtaaaga gccgaatttc acagggcggc aaaccgtcat ccgattggat
    15241 agcggcgtac agcagatcaa acttcaaggc aatgaggtcg ccaattt
//
LOCUS       DAXHNP010000032        14925 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.032, whole genome shotgun sequence.
ACCESSION   DAXHNP010000032 DAXHNP010000000
VERSION     DAXHNP010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14925
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.032"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(97..3582)
                     /gene="smc"
                     /locus_tag="ACFM5C_000752"
     CDS             complement(97..3582)
                     /gene="smc"
                     /locus_tag="ACFM5C_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HFC6068498.1"
                     /translation="MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAV
                     RWVLGEASAKQLRGESMQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVS
                     IKRQLTRQGESTYFINNQTVRRRDITDLFLGTGVGARGYAVIEQGMISRIIEARPEEL
                     RAYIEEAAGVSKYKERRKETEGRLKDTREHLQRLGDLQNELARQVEKLEKQAETAERY
                     KSLTAQLNRQQDLLDYAQWQQSLAAADKATEQHQSLQAQQDETAAQVQALNDEVHALQ
                     TAEQSQQQAVHELSNKRGVLREQIARLEEQIRHQQNLHQRIERDKQAAQAQLQRIHQE
                     QQQIRVQLEENELYVEEKQTELAEWAMQVAEHEERLPELEETQTALNAAFQTQQDEAN
                     RIRRELALKQQQLAHAEQTVAKHEERKGRLKQENQALNLPDEAETAAAQEAAALLQSR
                     QEHYEEQIIAAEEALHAAREAFQTASNRFQSLKQQHITLQAQQQALSQILSQQQEAAD
                     FWQATGHAAAPQLWQHITAPAEWQHALSVILAERLHARDVPQGFVPPEPLPQGQAAWL
                     SDGLSGGIKKSLPVQALLNQIQAQPPFQTALHHWLDGVLCAPDLSYALAHQNDLGAHQ
                     IWLTPEGHQVDKVSVLLYAKPAQESLIAQKARLDGIASELENLSPELSAAEAAFKQAE
                     AAVRSSEVQHKNLMQQQQQHTRQYSQAQQRAAELLARTNQGQIRREHIERELAQLAEE
                     QTVLQHASDGLSDDIATLQEAAAELEHQQQTAAHSRQEQQGRLKQAQLALLEANRQYG
                     LAEVAVHKLNQQKQNYQQQIARLEQQTLDWQERQQELVLAYETEFQNDEQHIKLDELT
                     ESVHTLDEEYIAVQEKLTQIQEQGREQYARVQTLQTQLPQLQAATQTALLQQQEALIN
                     AKRYHQNLTERAADLDALEALAKESPKVLNSSIGSLSQQIEALGAVNLAALQELEEAR
                     ERDGYYRSQSEDVQTAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFFPTLFGGGE
                     ATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSLNPAPFCL
                     LDEVDAPLDDANTSRFCNLVKEMSAQTQFLYISHNRLTMEMAEQLVGVTMQEKGVSRV
                     VAVDIKQALEMAESV"
     gene            3831..4553
                     /gene="lpxH"
                     /locus_tag="ACFM5C_000753"
     CDS             3831..4553
                     /gene="lpxH"
                     /locus_tag="ACFM5C_000753"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFC6068499.1"
                     /translation="MKPAYFISDLHLSEKHPELTALLLRFLRSSAAGQARAIYILGDL
                     FDFWVGDDEVSELNTSVAREIRKLSDKGVAVFFVRGNRDFLIGQDFCRQAGMTLLPDY
                     SVLDLFGCKTLICHGDTLCTDDRAYQRFRKIVHRKRLQKLFLMLPLKWRTRLAAKIRR
                     VSKMEKQVKPADIMDVNAAFTARQVRAFNAERLIHGHTHREHIHHENGFTRIVLGDWH
                     NDYASILRVDGDGAVFVPLEKC"
     gene            4822..6408
                     /locus_tag="ACFM5C_000754"
     CDS             4822..6408
                     /locus_tag="ACFM5C_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HFC6068500.1"
                     /translation="MALFLSIFPIVLLIWLMVKKNSMPSYVALPITAVLIYAIKLFYF
                     GDAGMLLNATAASGLVKTLTPITVIFGAIMFNRMMETTGCIDVIRKWLATISPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILMSLGFNPLKVAIFTLVMNSVPVSFGAVGT
                     PTWFGFAPLNLSAEDILAIGRQTGVMHFFAGFVIPVIGLGFIVPWSEIRKNLGFVAIA
                     VFSCTIPYVALAMVNEEFPSLVAGAIGLMVSVFAANQGWGLSKDHAKDPNAEKVPFAQ
                     VAKALAPLGMLIGMLVVTRIKQLGIKGILTSKEEWFSFQLPFDLSKITVSDSLTITFG
                     NIFGQDVSASYQTLYVPAWIPFVLTVWICILLYKTKFKDAWTIYAVTFNQTKKPLLAL
                     MGALIMVQLMLVGGDNSMVKIIGKEFAAMAGEHWVYFSPYLGAIGAFFSGSNTVSNLT
                     FGPIQQQIALDTGLSVTLILALQSVGGAMGNMVCLNNIIAVCTVLDVKNSEGAIIKKT
                     VIPMAIYGVIAVVAAMIFFL"
     gene            complement(6576..6779)
                     /locus_tag="ACFM5C_000755"
     CDS             complement(6576..6779)
                     /locus_tag="ACFM5C_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HFC6068501.1"
                     /translation="MDNLNLQEISVLPENLPLYCSGPDNEQWNGHPRVFLPLCEGESG
                     SVACPYCGTRYRLDGKMPHHHYA"
     gene            6895..7392
                     /locus_tag="ACFM5C_000756"
     CDS             6895..7392
                     /locus_tag="ACFM5C_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-mimic protein DMP19"
                     /protein_id="HFC6068502.1"
                     /translation="MTALTLPEDILQQEPSVLLYTLVSAYLEHTAQTGDESLSCLSDD
                     QHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKAL
                     YEQHGETIETLADEGRDIPSLRKQFPDFEEWDGAYYEAAEQDLPLLAEHIRSNWETFA
                     HIGQA"
     gene            7474..8667
                     /locus_tag="ACFM5C_000757"
     CDS             7474..8667
                     /locus_tag="ACFM5C_000757"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HFC6068503.1"
                     /translation="MFFKHIEAAPADPILGLGEAFKAETRPEKVNLGIGVYKDASGAT
                     PLVKAVKEAEKRLLESETTKNYLTIDGVADYNEQTQILLFGKDHEIIASRRAKTAQSL
                     GGTGALRIATEFAKRQLNAQTIWISNPTWPNHNAIAKAVGIQDKPYRYYDAAKHGLDW
                     DGMIEDLSQAQKGDIVLLHGCCHNPTGIDPTPEQWETLAKLSAEKGWLPLFDFAYQGF
                     GNGLEEDAYGLRVFLKHNTELLIASSYSKNFGMYNERVGAFTLVAEDEETAARAHSQV
                     KTIIRTLYSNPASHGANTIALVLKNDDLKAQWIAELDEMRGRIKAMRQKFVELLKAKG
                     ASQNFDFIIEQNGMFSFSGLTPEQVDRLKNEFAIYAVRSGRINVAGITDDNIDYLCES
                     IVKVL"
     gene            complement(9070..10005)
                     /gene="hemC"
                     /locus_tag="ACFM5C_000758"
     CDS             complement(9070..10005)
                     /gene="hemC"
                     /locus_tag="ACFM5C_000758"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFC6068504.1"
                     /translation="MNPKKLVIASRESLLAMWQAKHIQGRLKALYPDCEVEILGMTTR
                     GDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERA
                     NPFDAFVSNQYARLEEMPKGAVVGTSSLRREAQLRARYPHLLIKPLRGNVQTRLSKLD
                     NGEYDAIILAAAGLQRLELDGRIRMILSESDSLPAAGQGALGIEIAAHREDLYEVLKP
                     LNHDTTHACVTAERALARALGGSCQVPLAAYCTEENGLLTLRGLVGHPDGSVILQADA
                     QAPAEYADALGRAVAKKLADDGARELIGAVLNTEN"
     gene            10124..10639
                     /gene="ybeY"
                     /locus_tag="ACFM5C_000759"
     CDS             10124..10639
                     /gene="ybeY"
                     /locus_tag="ACFM5C_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFC6068505.1"
                     /translation="MKRAKQYPFLSLQRQRFHLNFENASSTANLPSERDFYRWAWSAL
                     KNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDL
                     IICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAA
                     GFPNPYQEDEY"
     gene            10641..11465
                     /locus_tag="ACFM5C_000760"
     CDS             10641..11465
                     /locus_tag="ACFM5C_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HFC6068506.1"
                     /translation="MDGTQSKPKFFERLISRLAGEPDSAEDVLTLLRQAHEQEVFDAD
                     TLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD
                     EVLGILHAKDLLKYMFNPEQFHLKSVLRPAVFVPEGKSLTALLKEFREQRNHMAIVID
                     EYGGTSGLVTFEDIIEQIVGEIEDEFDEDDSADNIHAVSSERWRIHAATEIEDINTFF
                     GTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRVK"
     gene            complement(11608..12987)
                     /gene="nhaC"
                     /locus_tag="ACFM5C_000761"
     CDS             complement(11608..12987)
                     /gene="nhaC"
                     /locus_tag="ACFM5C_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HFC6068507.1"
                     /translation="MFAFKSLLDMPRGEALAVVVALIAAMGYTIISLEWLPHMSIIAA
                     IVVLILYGLARGLKYNDMQQGMIGALNQGMGAIYLFFFIGLMVSALMMSGAIPTLMYY
                     GFGLISPTYFYFSAFALCSVIGVSIGSSLTTCATVGVAFMGMAAAFHADMAMTAGAIV
                     SGAFFGDKMSPLSDTTGISASIVGIDLFEHIKNMMYTTIPAWLISAALMLWLLPNVAA
                     QDLNGVESFRSQLEATGLVHGYSLIPFALLVVLALMRVNAVVAMLFTVIAAVAVTYLH
                     STPDLRQLGAWFYGGYKLEGEAFKDVAKLISRGGLESMFFTQTIVILGMSLGGLLFAL
                     GAIPSLLDAVRSFLTNAGRATFSVAMTSVGVNFLIGEQYLSILLSGETFKPVYDRLGL
                     HSRNLSRTLEDAGTVINPLVPWSVCGVFISHALGVPVWEYLPYAFFCYLSLALTLLFG
                     WTGLTLSKK"
     gene            complement(13279..14502)
                     /locus_tag="ACFM5C_000762"
     CDS             complement(13279..14502)
                     /locus_tag="ACFM5C_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HFC6068508.1"
                     /translation="MSAQSQNNHTSPLVVLTTLFFMMGFITCMNDILIPHLKEIFDLS
                     YVQAMLIQFCFFTAYAVMSIPMGAFVGKVGYKNGVIGGFLLTAVGCLLFYPAAGSHSY
                     AVFLGALFILASGVTLLQVAGNPYVTLLAKPGKESATLTLVQAFNALGTTIAPQIGAF
                     LILADATQTVSKAEQISSVQIPYLGLAGLLIILAVFVKMIRLPDARKIAAEESAHNHD
                     GKTSVWQYKHLVFGTAGIFCYVGAEVSIGSLMVNVLGYLKGLDHASAAHYLSFYWGGA
                     MVGRFLGSAVMAKFAPNRYLAFNASAAVVLLAVAMATGSGNADVAMWSLLAIGFFNSI
                     MFPTIFSLATKGLGKFTNAASGVLCTAIVGGAVVPVVQGWVADTYTLMSSFVVSVICY
                     LYIVFFAVYGYRADK"
BASE COUNT         3524 a         4189 c         3845 g         3367 t
ORIGIN      
        1 gctgtaccga tttaaattta attcactata ccgtctgaca acccgtatcg caacacttca
       61 ttaaaaacgg caagattcag ccgttctgca acccgttcaa acggattccg ccatttccaa
      121 cgcctgtttg atgtccacgg cgacgacgcg cgatacgcct ttttcctgca tggttacacc
      181 gaccagctgt tccgccattt ccatggtcag gcggttgtgg gagatgtaga gaaactgggt
      241 ttgcgccgac atttctttga ccaggttgca gaaacgcgaa gtgttggcat cgtctagcgg
      301 agcgtcgact tcgtccaaaa gacagaacgg agcggggttg aggctgaaca gggcgaacac
      361 gaggctcatc gcggtaaggg ctttttcgcc gccggaaagg aggtggatgg tgctgttttt
      421 cttgccgggc gggcgcgcca tgatagacac gccggcggtc aaaaggtcgt cgcctatcat
      481 tttgagggtg gcttcgccgc cgccgaacag ggtcgggaag aaggtttgga ctttgccgtt
      541 gacggcgtcg aaggtttctt tgaaacgcgc tttggttttg tcgtcgattt gggcgatggc
      601 ttcttccaaa agggtgatgg cggtctgcac gtcttcgctt tggctgcggt agtagccgtc
      661 gcgttcgcgc gcttcttcga gttcttgcag ggcggcgagg ttgaccgcgc cgagggcttc
      721 gatttgttgc gagaggctgc cgatgctgct gttcaatact ttcggcgatt ctttcgccaa
      781 cgcttcgagc gcatccaaat cggcggcgcg ttcggtcagg ttttgatggt agcgtttggc
      841 gttgatcagg gcttcctgtt gttgcaacag ggcggtttgg gtggcggcct gaagctgtgg
      901 caactgggtt tgcagggttt gtacgcgggc gtattgttcc ctaccctgct cctgaatctg
      961 cgtgagtttt tcctgcacgg cgatgtattc ttcgtccagc gtgtgtacgg attcggtcag
     1021 ctcgtcgagc ttgatgtgct gctcgtcgtt ttggaactcg gtttcatagg cgaggacaag
     1081 ctcttgctgg cgttcctgcc agtctagggt ttgctgttcg agtcgggcga tttgctgctg
     1141 gtagttttgt ttttgctggt tgagtttgtg gacggcgact tcggcaagcc catattggcg
     1201 gttggcttcc agcagggcaa gctgcgcctg tttcagacgg ccttgctgct cttggcggct
     1261 gtgtgcggcg gtttgctgct ggtgttcgag ttcggcggcg gcttcctgca aagtagcaat
     1321 gtcgtctgaa agcccgtcgg acgcgtgttg caacacggtc tgctcttccg ccaactgcgc
     1381 cagttcgcgc tcgatgtgtt cgcggcggat ttgcccttgg ttggtacgcg ccagaagttc
     1441 ggcggcgcgt tgctgcgctt ggctgtattg gcgcgtgtgc tgctgttgct gctgcatcag
     1501 gtttttatgc tgcacttcgg acgagcgcac ggcggcttcc gcctgtttga acgcggcttc
     1561 ggcggcagaa agttcggggg agaggttttc cagttcggac gcgatgccgt cgaggcgcgc
     1621 tttttgggca atcaggcttt cctgcgcggg tttggcatag agcaggacgc tgaccttatc
     1681 gacctgatgg ccttcgggcg tgagccagat ttgatgtgcg cccaaatcgt tttgatgcgc
     1741 gagggcgtaa ctcaaatcag gcgcacacaa tacgccgtcg agccagtggt gcaatgccgt
     1801 ctgaaacggc ggctgcgctt ggatttggtt cagcaatgcc tgtacgggca gggatttttt
     1861 gatgccgccg gagagaccgt ctgaaagcca cgccgcctgc ccctgcggca aaggttcggg
     1921 cggtacgaaa ccttgcggca cgtcgcgggc gtgcaggcgt tcggcaagga tgacggacag
     1981 ggcgtgctgc cactcagcag gcgcggtaat gtgttgccac agttgcggcg cggcggcgtg
     2041 gccggttgcc tgccagaaat cggctgcttc ctgctgttgc gacaggattt gcgacaacgc
     2101 ctgctgctgc gcctgcaagg tgatgtgttg ctgcttcagg ctttggaagc ggtttgaggc
     2161 cgtctgaaac gcctcgcggg cggcgtgtaa ggcttcttcg gcggcgatga tttgttcttc
     2221 gtaatgctct tgccggcttt gcaacaaggc agcggcctcc tgcgcggcgg cggtttccgc
     2281 ttcgtcgggc aggttcaggg cttggttctc ctgtttcaga cggcctttgc gctcttcgtg
     2341 cttggcaacg gtttgttcgg catgggcaag ctgctgctgc ttcaacgcca gttcgcggcg
     2401 gatgcggttt gcctcgtcct gctgggtttg gaaggcggca ttgagcgcgg tttgggtttc
     2461 ttccaattcg ggcagacgct cttcgtgttc ggcaacctgc atcgcccact ccgccagctc
     2521 ggtttgcttt tcttcgacgt ataactcgtt ttcttcaagc tgcacgcgga tttgctgctg
     2581 ctcttgatga atacgctgca actgcgcctg cgccgcctgc ttgtcgcgtt cgatgcgttg
     2641 gtgcaggttt tgctgatggc ggatttgttc ttccaaacgg gcaatctgct cgcgcaacac
     2701 gccgcgtttg ttgctcaatt catgcaccgc ctgttgctgc gactgttcgg cggtctgcaa
     2761 ggcgtgtact tcgtcgttta acgcctgaac ctgcgcggcg gtttcgtcct gctgcgcctg
     2821 caaagactga tgctgctcgg tcgccttgtc ggcggcggca agcgattgct gccattgggc
     2881 gtaatcgagc aaatcctgtt gccggttcaa ctgcgcggtc agggatttgt agcgttcggc
     2941 ggtttccgcc tgtttctcca gcttttccac ctgacgcgcc aattcgttct gcaaatcgcc
     3001 caaacgctgc aaatgctcgc gcgtgtcttt cagacggcct tccgtctcct tgcggcgttc
     3061 cttatatttg gacacacctg ccgcctcctc gatataggcg cgcaattcct ccggccgcgc
     3121 ttcgatgatg cgcgaaatca tcccctgctc gataacggca taaccgcgcg cgcccacgcc
     3181 cgtacccaaa aataaatcgg taatgtcgcg gcggcgcacg gtctgattat tgatgaaata
     3241 agtcgattcg ccctgacgcg tcagctgccg cttgatactc acctcggcat actgccccca
     3301 cgccccctgc aaactgtggt cgctgttgtc aaacaccagc tccaccgaag ccctcggcgc
     3361 aggacggcgc gtcgccgcac cgttaaaaat cacgtcctgc atactctcgc cacgaagctg
     3421 cttcgccgaa gcctcgccca acacccagcg caccgcgtca atcacattcg acttgccgca
     3481 gccgttcggc ccgataaccg caacaagctg ccccggaaca tgaatcgtgg tcgggtcggt
     3541 aaaagatttg aagccggaga gtttgatgtg ggtcaggcgc ataatggtcg gaaaaaataa
     3601 aaaagaagcg tattttaacg gaaatcccgc cgcaccaccc catatcttgc cggcaaaacc
     3661 ttaccgcatc ccgcacccgc gatgccgtct gaagccttca gacggcattt ttaacgcgcc
     3721 cgaaccccgg ttccgccaat gcccgatgct tggcgcggca tttgccgtat tgccccgccg
     3781 ccgggcgcgt tataatccgc cccgacatcc gcccgattgg aaacctgcct atgaaacccg
     3841 cctatttcat ctccgacctg catttgagcg aaaagcaccc cgaactgacc gcgctgctgc
     3901 tgcgtttttt acgttcttcc gccgccgggc aggcgcgggc gatttatatt ttgggcgatt
     3961 tgtttgattt ttgggtgggc gatgacgaag tttccgagtt gaatacttcg gttgcgcggg
     4021 aaatcaggaa attgtccgac aaaggcgttg ccgtgttctt cgtcaggggc aaccgcgact
     4081 tcctgatcgg tcaggatttt tgccggcagg cgggtatgac gctgctgccg gattactcgg
     4141 ttttggactt gttcggctgc aaaaccctca tctgccacgg cgacactctg tgtacggatg
     4201 acagggcata ccaacgtttc cgcaaaatcg tgcatcggaa gcggctgcaa aaactgttcc
     4261 tgatgctgcc cctgaagtgg cgcacgcgcc ttgccgccaa aatcaggcgc gtcagcaaaa
     4321 tggaaaaaca ggtcaagccc gccgatatta tggatgtcaa tgccgccttt accgcgcggc
     4381 aggttcgcgc ctttaacgcg gaaaggctga tacacggaca cacccaccgc gagcatatcc
     4441 atcacgaaaa cggctttacc cgcatcgttt tgggcgactg gcataacgac tatgcttcaa
     4501 tcctccgcgt ggacggggac ggcgcggtat tcgtgccgct ggaaaaatgc tgaaaatgcc
     4561 gtctgaagcc tttcgggcgg ctttttttac acgccccttt cccacactcc ctccgccgca
     4621 tcatcaccat ccttaacccg cattaatggg cgttatcgat aaaatgcttg accgattaca
     4681 taagattacg taaagtgtgc aaacgcataa caattggtct taccaattta tcttttaacc
     4741 aaaatatcgg gtgtacggga tttgaacgtc tttccaaacc tcgacgcgcc ttatgatgca
     4801 aatgcctaaa aaggattcgt tatggcactt ttcctcagca tattccccat cgtcctgctg
     4861 atttggctga tggtgaaaaa aaacagtatg ccctcctacg tcgcgctgcc gattaccgca
     4921 gtgctgattt acgccatcaa acttttctac ttcggcgatg cgggcatgct gctcaacgcc
     4981 accgccgctt ccggcctcgt caaaacgctc acgccgatta ccgtgatttt cggcgcgatt
     5041 atgttcaacc gtatgatgga aaccacgggc tgcattgatg tcatccgcaa atggctggcg
     5101 accatcagcc ccaaccccgt agcgcaactg atgattatcg gctgggcttt tgcctttatg
     5161 attgaaggcg catccggctt cggcacgcct gccgcgattg ccgcgccgat tctgatgagc
     5221 ttgggcttca acccgttgaa agtggcgatt ttcactttgg tgatgaactc cgtccccgtc
     5281 tctttcggcg cggtcggtac gccgacctgg ttcggtttcg caccgctgaa cctgagtgcc
     5341 gaagacatcc tcgccatcgg caggcagacc ggcgtaatgc acttcttcgc aggtttcgtc
     5401 atccccgtca tcggcttggg cttcatcgta ccttggtctg aaatccgcaa aaacttgggc
     5461 ttcgtcgcca ttgccgtctt ctcctgcacc attccttatg tcgcattggc gatggtcaac
     5521 gaagaattcc cgtcgctcgt cgccggcgcg atcggcctga tggtgtccgt attcgccgcc
     5581 aaccaaggct ggggcttgag caaggaccac gccaaagacc cgaatgccga aaaagtgccg
     5641 ttcgcccaag tcgccaaagc actcgcccct ttgggtatgc tgatcggcat gctggtggtt
     5701 acgcgcatca aacagctcgg tatcaaaggc attttgacca gcaaagaaga atggttcagc
     5761 ttccaactgc cgtttgattt gtccaaaatc accgtcagcg actccctgac gattaccttc
     5821 ggcaatattt tcggacaaga tgtcagcgcg tcttaccaaa cgctgtacgt cccggcttgg
     5881 attccgtttg tgctgaccgt ttggatttgc atcctgctgt ataaaaccaa attcaaagat
     5941 gcctggacga tttatgccgt aaccttcaat caaaccaaaa aaccgctgct tgccctgatg
     6001 ggcgcgctga ttatggttca gctgatgctg gtcggcggcg acaattcgat ggtgaaaatc
     6061 atcggtaagg aatttgccgc aatggcgggc gaacactggg tttatttctc gccgtatctg
     6121 ggcgcgatcg gtgcgttctt ctccggctcc aacaccgtgt ccaacctgac tttcggcccg
     6181 attcagcagc aaatcgcctt ggataccggc ctgtccgtta ccctgattct ggcgttgcag
     6241 tccgtcggcg gcgcgatggg caatatggtg tgcctcaaca acatcatcgc cgtatgtacc
     6301 gtattggatg tgaaaaattc cgaaggtgcg attatcaaga aaaccgttat cccgatggcg
     6361 atttacggcg tgattgccgt cgtcgcggca atgattttct tcctctaggc gaaacgccac
     6421 catccatagc ggcagcacgc ggggaacgga aaccgccgtt ccccgtctgg gcggcgcgtc
     6481 gggcagaatc ccggtgccgg aacagcccgc cccgccaaac aaatgccgtc tgaaaccgga
     6541 aaaggcttca gacggcattt ttccgccgtt tgcattcagg cgtaatgatg atgcggcatc
     6601 ttgccgtcaa ggcggtagcg cgtgccgcaa tacgggcagg caacgctgcc cgattctcct
     6661 tcgcacaaag gcaaaaacac tctcggatgc ccgttccact gctcgttgtc gggtcccgag
     6721 caatacagcg gcagattttc cggcaacacg gaaatttcct gcagattcag attgtccatt
     6781 tgattttcct ttgcgtggtt ggcgtgcgcc cattttacgc catcggcagg ctaaaggata
     6841 ttttcggcgc aaagccgcaa tccgctataa tccccacttt tcagacggca taccatgact
     6901 gcgcttaccc ttccggaaga catcctccaa caagaaccat ccgttctgct ctataccctc
     6961 gtttccgcct acctcgaaca caccgcccaa accggcgacg aatccctctc ctgcctgtcc
     7021 gacgaccagc acacgctgac cgcattctgc tacctcgaca gccaagtcga agaaggcggc
     7081 ttcgtgcaac tcatcgcctc cggttacggc gaatatattt tccgcaaccc gcttgccgac
     7141 agcctgcgcc gctggaaaat caaagccgtg ccgaaagtct tggacaaagc caaagccctc
     7201 tacgaacaac acggcgaaac catcgaaacg cttgccgacg aagggcggga catcccttcc
     7261 ctgcgcaaac agttccccga ctttgaagaa tgggacggcg catactacga agccgccgaa
     7321 caagacctgc ccctgcttgc agaacacata cggtcaaact gggaaacctt cgcccatatc
     7381 gggcaggcgt gattgcgtct gtttccagcc cgtgtaaaac agcgtaaaat cggcaaaccc
     7441 gaatgacctt ccgtccccat caaggagcaa gctatgttct tcaagcacat cgaagccgcc
     7501 cccgccgatc cgattctcgg tttgggcgaa gcattcaaag ccgaaacccg ccccgaaaaa
     7561 gtcaacctcg gcatcggcgt ttataaagac gcatccggcg cgacacccct cgtcaaagcc
     7621 gtcaaagaag ccgaaaaacg cctgttggaa agcgaaacca ccaaaaacta cctcaccatc
     7681 gacggtgttg ccgactacaa cgagcaaacc caaatcctgc tgtttggcaa agaccacgaa
     7741 atcatcgcca gccgccgcgc caaaacagcg caaagccttg gcggtacagg cgcattgcgt
     7801 attgcgaccg agtttgccaa acgtcagttg aacgcgcaaa ccatctggat ttccaatccg
     7861 acttggccaa accacaacgc catcgccaaa gcggtcggta tccaagacaa accttatcgt
     7921 tactatgatg ccgccaaaca cggtttggat tgggacggta tgattgaaga cttgagccaa
     7981 gcgcaaaaag gcgacatcgt cctgctgcac ggctgctgcc acaaccctac cggcatcgac
     8041 cctacgcccg aacaatggga aactctggca aaactttctg ccgaaaaagg ctggctgccg
     8101 ctgtttgact ttgcctacca aggcttcggc aacggtttgg aagaagatgc ctacggcttg
     8161 cgcgtgttct tgaaacacaa tacagaattg ctgattgcca gctcttattc caaaaacttc
     8221 ggtatgtaca acgagcgcgt cggcgcgttc actttggtgg ccgaagatga agaaacagca
     8281 gcccgcgccc acagccaagt caaaaccatc atccgtacct tgtattccaa cccggcttca
     8341 cacggtgcga acaccattgc gctggtgttg aaaaatgatg atttgaaagc acaatggatt
     8401 gccgaactcg atgaaatgcg cggccgcatc aaagccatgc gccaaaaatt tgtcgagttg
     8461 ctcaaagcca aaggtgcaag ccaaaacttt gatttcatta tcgaacaaaa cggtatgttc
     8521 tctttcagcg gattgactcc cgaacaagtc gaccgtttga aaaacgagtt tgccatttat
     8581 gccgtccgct ccggccgcat caacgttgcc ggcattaccg acgacaacat cgattatctg
     8641 tgcgaaagca tcgtgaaagt cttgtaaaac aaaagcgcat acgaaatgcc gtctgaacct
     8701 taaccagttc agacggcatc tgttttttgt taaaaaacaa taaaccataa caatttcaaa
     8761 caagctaaaa acatctataa aatcaaccca atatgatgaa ctcaaataaa aaatacgaat
     8821 atcatcattc tcaaattcaa aatttgaacg ccacagtatt atccgaagcc acaaaaacct
     8881 ttccgccgtc attcccgcgc aggcgggaat ccgggaaccc aatgctgcaa gaattgatta
     8941 gaaacaactg aaaccgagca aactggattc ccgcctgtgc gggaatgacg aaataaggcg
     9001 agtaaaactg atgaaacaaa ttgattaaaa acaataactt atattatttt atttaaattt
     9061 tcgataaaat caattttccg tattcaatac tgctccaatc aattcccgcg caccgtcgtc
     9121 cgccaatttc ttagcgacag cgcgtccgag cgcgtcggca tattcggcag gggcttgcgc
     9181 gtccgcctgc aaaatgaccg aaccgtcggg gtgtccgacc agtccgcgca aggtcagcaa
     9241 gccgttttct tccgtgcaat atgcggccaa aggcacttgg cagcttccgc ccaaagcgcg
     9301 cgccaaagcg cgttcggccg taacgcaggc gtgtgtggta tcgtggttta gcggttttaa
     9361 aacctcatac aaatcttcgc ggtgcgcggc aatttcgata cccaatgcgc cttgtccggc
     9421 ggcaggcagg ctgtcggatt ccgacaaaat catgcggatg cgtccgtcca attccagacg
     9481 ctgcaaaccg gcggcagcca agataattgc gtcgtattcg ccgttatcga gtttagacaa
     9541 acgggtttgc acattgccgc gcaaaggttt gataagcaaa tgcggatagc gcgcacgcaa
     9601 ctgggcttcg cggcgcaggc tggatgtgcc tacgacggcg cctttgggca tttcttccaa
     9661 acgcgcgtat tggttggaca caaacgcgtc aaacggattg gcgcgttcgc cgatggctgc
     9721 aagcgcgaaa ccttcaggca aatccatcgg cacatcttta atcgaatgca cggccaagtc
     9781 agcgcgcccg tcatataaag cctgttccaa ctctttgaca aacaagccct taccgccgac
     9841 ttttgacaaa gttttgtcca aaatctggtc gccgcgcgtg gtcatgccca aaatctcgac
     9901 ttcgcaatcg ggatacaggg ctttcagacg gccttggata tgctttgcct gccacatggc
     9961 aagcaggctt tcgcgactgg cgataacgag ttttttcggg ttcataatgg ttgcctgaaa
    10021 gatggaaaac ggcatgaagt ctatcatatt ttgggcggtc tttcagacgg catgagggtg
    10081 aatatgttat atttacgcct aaaaaccaaa ttttccggac aacatgaaac gcgccaaaca
    10141 atatcctttt ttatccttac agcgacaacg ttttcatctg aactttgaaa acgcttcttc
    10201 caccgccaac cttccgagcg aacgcgattt ctaccgctgg gcgtggtctg ccttgaaaaa
    10261 tgaataccgc cgcgccgaca tcagcctgat tcttctggac gaagaagaag cccgcgctta
    10321 caaccgcgac taccgcggca aagattacgc caccaatgta ttgagtttcg cgctcaacga
    10381 aggcgaaatc ctgccctgcc aagtttcgga aaaactgtac ggcgatttga ttatctgccc
    10441 gcaagtggtt ttgaaagaag ccgccgaaca gggcaaaacg cccgaacggc attttgccca
    10501 cctgaccata cacggcgttt tgcacctgat gggctacgac cacatcgaag acgatgaagc
    10561 cgaaataatg gaagccgaag aaatccgcct gatgctggcg gcaggcttcc ccaaccccta
    10621 ccaagaggac gaatattaaa atggacggta cgcagtcgaa acccaagttt ttcgaacgcc
    10681 tgatctcccg acttgccggc gagcccgact ccgccgaaga cgtattgacc ctgctgcgcc
    10741 aagcgcacga gcaggaagtt tttgatgcgg atacgctttt aaggttggaa aaagtcctcg
    10801 atttttccga tttggaagtg cgcgatgcca tgattacgcg cagccgtatg aacgttttaa
    10861 aagaaaacga cagcatcgag cgcatcaccg cctacgtcat cgataccgcc cattcgcgct
    10921 tccccgtcat cggcgaagac aaagacgaag ttttgggcat tttgcacgcc aaagacctgc
    10981 tcaaatatat gttcaacccc gagcagttcc acctgaaatc cgtcttgcgc cctgccgttt
    11041 tcgttcccga aggcaaatct ttgaccgccc ttttaaaaga gttccgcgaa cagcgcaacc
    11101 acatggcgat tgttatcgac gaatacggcg gcacgtcggg tttggtcacc tttgaagaca
    11161 tcatcgagca aatcgtcggc gaaatcgaag atgagtttga cgaagacgac agtgccgata
    11221 atatccacgc cgtttcttcc gaacgctggc gcatccacgc ggctaccgaa atcgaagaca
    11281 tcaatacctt cttcggcaca gaatacagca gcgaagaagc cgataccatc ggcggcctgg
    11341 tcattcaaga gttagggcat ctgcccgtac gcggcgaaaa agtccttatc ggcggtttgc
    11401 agttcaccgt cgcccgcgcc gacaaccgcc gcctgcacac gctgatggcg acccgcgtga
    11461 agtaagcaga gcctgcccgc accgccgttt ctgcacagtt taggatgacg gtacggacgt
    11521 tttctgtttc aatccgcccc atccgccaaa cataaaaatg ccgtctgaaa ccggaaaaca
    11581 ggttcagacg gcatttcgct tatccgctta ttttttgctc aaagtcagcc ccgtccagcc
    11641 gaacagaagc gtcagtgcca aactcaaata gcagaaaaag gcatacggca gatattccca
    11701 caccggcaca cccagcgcgt ggctgataaa tacgccgcac acgctccacg gaacaagcgg
    11761 gttgatgacc gtacccgcgt cttcgagcgt acgcgagagg ttgcgggaat gtagtccgag
    11821 cctgtcgtaa acgggtttga acgtttctcc cgaaagcagg atgctcaaat attgttcgcc
    11881 aatcaggaaa ttgaccccga ccgaagtcat ggcaacactg aacgtcgcgc gtccggcatt
    11941 cgtcaaaaag ctgcggacgg catccagcag ggaaggaatc gcgcccagcg caaacagcag
    12001 tccacccaaa ctcatcccga gaatcacgat ggtttgcgtg aaaaacatac tttccaaacc
    12061 gccgcgcgaa atcagtttgg caacatcttt aaacgcttcg ccttcgagtt tgtaaccgcc
    12121 gtaaaaccac gcgccgagct gacgcagatc gggcgtgctg tgcagatacg ttacggcaac
    12181 ggcggcaatg acggtaaaga gcatggcgac cacggcattg acgcgcatca atgccaaaac
    12241 gaccaacagt gcaaacggaa tcagcgaata gccgtgcacc aatcccgtgg cttcaagctg
    12301 gctgcggaag gattcgacgc cgttcaaatc ctgcgcggcg acattcggca aaagccaaag
    12361 catcagtgcc gcactaatga gccacgcggg gatggtggtg tacatcatat ttttgatgtg
    12421 ctcaaacaag tcgatgccga cgatggacgc ggaaatgccc gtggtgtcgg aaagcgggga
    12481 cattttgtcg ccaaaaaatg cgcccgaaac aatcgcgccc gccgtcatcg ccatatcggc
    12541 atgaaacgcc gccgccatcc ccataaaggc aacgccgacg gtggcgcagg tggtcaggct
    12601 gctgccgatg gacacgccga tgacggaaca cagcgcgaaa gcggaaaaat aaaaataagt
    12661 cggggaaatc agcccgaaac cgtaatacat cagcgtcgga atcgcaccgc tcatcatcag
    12721 cgcgctgacc atcagcccga tgaagaaaaa caggtaaatc gcgcccatac cctgattcaa
    12781 cgcgcctatc atgccctgct gcatatcgtt gtatttcaaa ccgcgcgcca agccgtacaa
    12841 aatcagcacg acgatggcgg caataatgga catatgcggc agccactcca atgaaatgat
    12901 ggtatagccc atcgcggcaa tcagagcgac gacgacggca agtgcctcac cgcgcggcat
    12961 atcgagtaag gatttgaaag caaacatgat tctttgcccg atttgatata aagttaacgg
    13021 attctaacac accataccga atccgcccaa cgttttcaga cggcatttta gcgttttaca
    13081 aaagccggac agaaacaaaa cggcaatttt ctcaatttaa attaattttt tttgaaatat
    13141 aattttttat ttttttgttt gttggcatat aagactttta tggattgaaa tattaaaacc
    13201 tcggcacaca cgccgcaaac accggtacgc aaaaatgccg tctgaaagat gttcagacga
    13261 catttctcaa gaaaaagatt atttgtccgc cctatatccg tacaccgcaa aaaacacgat
    13321 atacagataa cagatgacgg aaacgacaaa cgaagacatc agggtgtaag tatctgccac
    13381 ccagccctgc acgacaggaa cgaccgcacc gccgacaatc gcggtacaca gtacaccgga
    13441 agccgcgttg gtaaattttc ccaatccttt ggttgccaaa gagaaaatcg tcgggaacat
    13501 aatcgagttg aaaaaaccga tggcaagcag cgaccacatc gccacatccg cattgccgct
    13561 acccgtcgcc atcgcgacgg caagcagtac gaccgcagcc gatgcgttaa acgccaaata
    13621 acggttgggc gcgaatttcg ccatcaccgc cgaaccgagg aaacgtccga ccatcgcgcc
    13681 gccccaatag aacgacaggt aatgcgcggc agaagcatga tccagccctt tcagataacc
    13741 caatacgttg accatcaacg aaccgataga cacctccgcg ccgacatagc agaaaatgcc
    13801 tgccgtaccg aacacgagat gtttgtattg ccatacgctg gttttgccgt cgtggttgtg
    13861 cgcgctttcc tcggcggcaa ttttgcgcgc gtcgggcagc cggatcattt tcacgaaaac
    13921 ggcaaggata atcagcagcc ccgccagtcc caaataggga atctgtacgg aagaaatctg
    13981 ttccgccttg ctgacggttt gggttgcgtc cgccaaaatc aggaacgcgc cgatttgcgg
    14041 cgcaatggtc gtacccaaag cgttaaacgc ctgaaccagc gtcagtgttg ccgattcctt
    14101 gccgggtttc gccagcaggg taacataagg attaccggca acctgaagca gcgttacgcc
    14161 ggaagccaaa ataaacaacg cgcccaaaaa taccgcgtaa gaatggctgc ccgcagcagg
    14221 ataaaacagc aggcatccga ccgccgtcag cagaaagccg ccgataacgc cgtttttgta
    14281 gccgactttg ccgacaaaag cccccatcgg gatggacatc accgcatagg cggtaaagaa
    14341 acagaattgg atcagcatcg cctgaacgta agacaggtcg aaaatttctt tcaaatgagg
    14401 gataaggatg tcgttcatgc aggtaataaa acccatcatg aagaacagcg tggtcaagac
    14461 gaccaatggg gacgtatgat tgttttgtga ttgcgcagac atgatttgcc tttcgtggtg
    14521 tcggaatatt acccgtttca agaaaataga aattgacatt tcttaacggc aatgcaaatc
    14581 atactgatat ttgaacattt tgcaaacttt atcggatgca ggcaatgcgc cgatctgaaa
    14641 ttcaagcagc agaaattaat attttacagt tgcttgcata gattttaata gattttaaaa
    14701 aattccggcg gacttgcaaa aaccgttccc aataaaatga aaatccgccg ccgtatccgg
    14761 aaaattcgga aatgccgcat cgtggcatca aaaccggagc ggaaagaatg tcgtatgccc
    14821 gacaaaaaag gggcatacgg ctgtgccgta ttttttgcac cgtcctccgc ccttcggcgg
    14881 gggcgtgaaa atatagtgga ttaacaaaaa tcaggacaag gcgac
//
LOCUS       DAXHNP010000033        14918 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.033, whole genome shotgun sequence.
ACCESSION   DAXHNP010000033 DAXHNP010000000
VERSION     DAXHNP010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14918
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.033"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            40..1143
                     /gene="dnaN"
                     /locus_tag="ACFM5C_000763"
     CDS             40..1143
                     /gene="dnaN"
                     /locus_tag="ACFM5C_000763"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFC6068509.1"
                     /translation="MLILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTK
                     LLATDLEIQIDTAGPEGGADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAG
                     KSRFALQTLPAADFPMMNVGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLL
                     MQVEGSQLRLVATDGHRLAYAACAIDADLPRAEVILPRKTVLELFKLLNNPDDPIQIE
                     LLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILAN
                     EKFRGARLFLQSGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS
                     DDMQLAFGDANRSTLFTVPNNPNFKYIVMPMRI"
     gene            complement(1112..1381)
                     /locus_tag="ACFM5C_000764"
     CDS             complement(1112..1381)
                     /locus_tag="ACFM5C_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068510.1"
                     /translation="MPSETFPFQTAWFYSNLNRADWNQKHTFAIPAQALPLYAPNPNP
                     PHSRRHCLSDSRTKPRIRLHGSGHISNTGIVLRKTVKSASASQYI"
     gene            complement(1406..3463)
                     /gene="ppk1"
                     /locus_tag="ACFM5C_000765"
     CDS             complement(1406..3463)
                     /gene="ppk1"
                     /locus_tag="ACFM5C_000765"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HFC6068511.1"
                     /translation="MPEQNRILCRELSLLAFNRRVLAQAEDKNVPLLERLRFLCIVSS
                     NLDEFFEVRMAWLKRENKLHPRRRLDNGKMPSETIADVTEAARSLIRHQYDLFNNVLQ
                     PELARESIHFYRRRNWTGAQKKWIEDYFDRELLPILTPIGLDPSHPFPRPLNKSLNFA
                     VELDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGFVFLSSILHAHVGKLFPG
                     MNVKGCHQFRLTRDSDLNVDEEDVQNLRAAVQNELHDREYGDGVRLEVADTCPARIRD
                     FLLSQFRLTADELYQVKGPVNLVRLNAVPDLVNRPDLKFPPHTPGRLKALGKTASIFD
                     LVRQSPILLHHPYQSFDPVVEMMREAAADPAVLAVKMTIYRTGTRSELVRALMKAALA
                     GKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKIHAKMALVIRREDGVLK
                     RYAHLGTGNYHQGTSRIYTDFGIITADEQITADVNTLFMEITGLGKPGRLNKLYQSPF
                     TLHKMVIGRIRQETEHAKAGKPARITAKMNSLIEPTVIEALYRASAAGVQIDLIVRGM
                     CTLRPGVKGLSENIRVRSIVGRQLEHARVYCFHNNGADDTFISSADWMGRNFFRRIET
                     AAPITAPELKKRVIREGLEMALADNTHAWLMQPDGGYIRAAPAEGESEADLQNDLWTL
                     LGG"
     gene            complement(3632..4075)
                     /locus_tag="ACFM5C_000766"
     CDS             complement(3632..4075)
                     /locus_tag="ACFM5C_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HFC6068512.1"
                     /translation="MPFRLFLGILCGLSMVAPVYAQGQPDAINAYIQKKKVIVDTSKA
                     ELCFADDRQCHPVLIGVATPKGTFGLTLNSTDKPGYGGEVIGFKQEGDFLFALHRVWN
                     QIPSERRNERIASPSVSDRIMTNGCINVSDAVYEKLRHYFVLEVI"
     gene            complement(4082..4597)
                     /locus_tag="ACFM5C_000767"
     CDS             complement(4082..4597)
                     /locus_tag="ACFM5C_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6068513.1"
                     /translation="MKIKQIVKPGLAVLAAGVLSACATKSNVKADGTTDNPVFPKPYS
                     VTLDNKRGTFPTYDELDQMRPGLTKDDIYKILGRPHYDEGMYGVREWDYLFHFHTPGV
                     GIDPENTSGVEDVTTCQYKVIFDKDKFARSFYWNPVFPKDAACPPPAPKAEPQVIIRE
                     IVPAKPKRIRQ"
     gene            4867..7497
                     /gene="leuS"
                     /locus_tag="ACFM5C_000768"
     CDS             4867..7497
                     /gene="leuS"
                     /locus_tag="ACFM5C_000768"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFC6068514.1"
                     /translation="MQEQYQPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYP
                     SGKLHMGHVRNYTIGDVLSRFKLLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTY
                     DNIEYMKTQLKSLGFAIDWARETATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKT
                     MQRNWIGKSRGMTVRFAVSDDSKQGLEGDYAKFLQVYTTRPDTLMGATYVAVAAEHPL
                     ATAAAADKPELQEFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANY
                     VLWGYGDGAVMAVPAHDERDFEFATKYNLPKKQVIAVGDNAFDENQWQEWYGDKENGV
                     LVNSGDLDGLDFQTAFDAVAAKLQSQGAGEPKTQYRLRDWGISRQRYWGCPIPIVHCE
                     QCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETACPCCGGAAKRETDTMDTFM
                     ESSWYFFRYMSPKFSDGMVDPAAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEG
                     LVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPISAVLKADG
                     LPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAH
                     RFLRRLWRTVYEYLKQGEAVKAFAGSQDGLSKELKDLRHKLHATTAKVSDDYGRRQQF
                     NTAIAAVMELLNQYDKTDTGGEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNGAK
                     LWEAGWPTVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEAAALATEGAVKFM
                     EGKPAKKIIVVPGRLVNIVV"
     gene            7727..8518
                     /locus_tag="ACFM5C_000769"
     CDS             7727..8518
                     /locus_tag="ACFM5C_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DpnI domain-containing protein"
                     /protein_id="HFC6068515.1"
                     /translation="MNLFFDTKLGKQQNKATHKIRVMSEAWLEKNGYCPCCGSKPMQR
                     FANNKPVADLFCSNCHEQYELKSKNQKTIGNSVPDGAYRTMLERIRSDTNPNFFFLAY
                     KKADYSIRQLVLVPKHFITPDMIIPRNKGIKNRPHHIMCSINLAPLPESGKIFLIDDS
                     RIIEPETVLKKWQSNLFLRNQNAERKGWLLAVMKCIDQLPEEFTLSQIYEFENKLSIQ
                     FPQNNHIRDKIRQQLQILRDQNTIEFIGRGLYKKIDKLPPTSKAF"
     gene            8648..8779
                     /locus_tag="ACFM5C_000770"
     CDS             8648..8779
                     /locus_tag="ACFM5C_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl-tRNA synthetase"
                     /protein_id="HFC6068516.1"
                     /translation="MRDFDKLAEEAAEHAAEGAVKFIDGKPAKKIIAVPGRLANIVV"
     gene            9002..9736
                     /locus_tag="ACFM5C_000771"
     CDS             9002..9736
                     /locus_tag="ACFM5C_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFC6068517.1"
                     /translation="MNAAAAKDYMKTVELNKSAGNVDTTSRTARRVQAVFRRMLPYAD
                     AANNTGHRFDWKMTVFKNDELNAWAMPGGKMAFYTGIVDKLKLTDDEIAAIMGHEMTH
                     ALHEHGKNKVGQQILTNTAAQIGTQIILDKKPDTNPELVGLGMDILGTYGLTLPYSRS
                     LEEEADEGGMMLMAQAGYHPAAAVRVWEKMNQENDQNGFIYAITSTHPTNNARIENLK
                     RLLPTVMPVYEQSVRNKGRVNKKRRR"
     gene            complement(10119..10430)
                     /locus_tag="ACFM5C_000772"
     CDS             complement(10119..10430)
                     /locus_tag="ACFM5C_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6068518.1"
                     /translation="MKYKSEALAAIHEMMEGAYNIGAIDKKTMRGFDKSCLTEIKPLS
                     GGDIKAIREKEALSQAAFAIYLNVGKNHVSAWERGVKKPSGAALKLLTIVKNKGIEAI
                     A"
     gene            complement(10427..10795)
                     /locus_tag="ACFM5C_000773"
     CDS             complement(10427..10795)
                     /locus_tag="ACFM5C_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6068519.1"
                     /translation="MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVI
                     KQRIARQGQGRSGGYRSLILFKQADRAFFVYAFAKNDRENISDKELDVYRKAAAYYLK
                     YTRAELAALKEDGIITEIES"
     gene            complement(11614..11699)
                     /locus_tag="ACFM5C_000774"
     tRNA            complement(11614..11699)
                     /locus_tag="ACFM5C_000774"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11663..11665),aa:Leu,seq:gag)
     gene            complement(11713..12063)
                     /gene="secG"
                     /locus_tag="ACFM5C_000775"
     CDS             complement(11713..12063)
                     /gene="secG"
                     /locus_tag="ACFM5C_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFC6068520.1"
                     /translation="MEAFKTLIWIVNIISALAVIVLVLLQHGKGADAGATFGSGSGSA
                     QGVFGSAGNANFLSRSTAVAATFFFATCMAMVYIHTHTTKHGLDFSNVQQTQQAPKPV
                     SNTEPSAPVPQQQK"
     gene            complement(12070..12843)
                     /gene="tpiA"
                     /locus_tag="ACFM5C_000776"
     CDS             complement(12070..12843)
                     /gene="tpiA"
                     /locus_tag="ACFM5C_000776"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFC6068521.1"
                     /translation="MYRQIGMWDQKWVIGNWKMNGRLQNNNALMHRFRILPTAERVLI
                     GLAAPTVYLLQLHNAMQIVLNNRILTCAQDVSRFPDNGAYTGEVSAEMLADTGTDIVL
                     IGHSERSLYFGEKNEIQRRKMENVLNVGLIPLLCVGESLEEREAGKEHEVIAHQLSIL
                     QGLDTKNIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDVKIRVLYGGSV
                     KADNAADIFAVPYVDGALVGGASLSYDSFTAIISAAQNA"
     gene            13027..13530
                     /locus_tag="ACFM5C_000777"
     CDS             13027..13530
                     /locus_tag="ACFM5C_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HFC6068522.1"
                     /translation="MHALHFSASDKAALYREVLPQIESVVADEADWVANLANTAAVLK
                     EAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGETVVVGDVNA
                     YPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEYLAQFDETDALYLGELAKILEKRF
                     EASRQAV"
     gene            13632..14288
                     /locus_tag="ACFM5C_000778"
     CDS             13632..14288
                     /locus_tag="ACFM5C_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HFC6068523.1"
                     /translation="MDFEKARFNMVEQQIRPWDVLDFDVLDALAEIPRELFVDEDLQG
                     LAYADMALPLANGHKMLEPKVVARLAQGLKLTKNDTVLEIGTGSGYAAALLAKLAGRV
                     VSDDIDAEQQKRAKAVLDGLSLENIDYVQNNGLTELSAGAPFDAVYVGGAVNLVPEVL
                     KEQLKDGGRMAVIVGRKPVQRALLITRKGDVFEEKVLFDTLVAHLDDKDADPFGGFDF
                     "
     gene            14368..14691
                     /locus_tag="ACFM5C_000779"
     CDS             14368..14691
                     /locus_tag="ACFM5C_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6068524.1"
                     /translation="MDIVQLGPAELKAWMDEGRMFCLLDVRTDEETAVCSLPNALHIP
                     MNLIPLRQNELPDDVPLVVYCHHGIRSLHTAMYLADAGFENLYNLQGGIDAWAAEIDG
                     NMMRY"
     gene            complement(14702..>14918)
                     /locus_tag="ACFM5C_000780"
     CDS             complement(14702..>14918)
                     /locus_tag="ACFM5C_000780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068525.1"
                     /translation="SLHIENAAQANFQFASLVLALSHGERGLGCRLPLRFRQILTSLI
                     PRFSFAEAALSDDLLEHHRYTHLRNAV"
BASE COUNT         3352 a         3732 c         4221 g         3613 t
ORIGIN      
        1 aatttaatcc actatacaaa ccgatttaaa ggagcgaaca tgttgatttt acaagccgaa
       61 cgcgacagcc tgctcaagcc gctgcaagcc gttaccggca tcgtcgaacg ccgccacacc
      121 ctgcccatcc tgtccaacgt cctgattgag ggaaaaggcg gtcagaccaa actcttggca
      181 accgatttgg aaatccaaat cgacactgcg ggtcccgagg gcggcgcgga cgacttccgc
      241 atcaccacca atgccaagaa atttcaggac attttgcgcg cgctgcctgc cggtgcgctg
      301 gtgtcgctgg attgggacga cagccgtctg acgctgaagg cgggcaaatc gcgttttgcc
      361 ctgcagaccc tgcctgccgc cgattttccg atgatgaatg tcggcgagga catcagcgcg
      421 actttctcgc tggagcagga gcgtttcaaa accatgctgt cgcaagtgca gtacagcatg
      481 gcggtgcagg acatccgcta ttatctcaac ggtctgctga tgcaggttga gggcagccag
      541 ttgcgccttg tggcgaccga cggacaccgc cttgcctatg cagcctgcgc gattgatgcg
      601 gatttgccgc gcgccgaagt gattttgccg cgcaaaacgg tgctggaact gttcaaactg
      661 ttgaacaacc ccgacgatcc gattcaaatc gagctgctgg acaagcaggt gcgtttccaa
      721 tgcaacggca cgaccatcgt cagcaaggtt atcgacggca aattccccga tttcaaccgc
      781 gtcatccctt tggacaacga caagattttc gttttgtccc gtgccgaact tttgggcgcg
      841 ctggaacgtg tgtccattct tgccaacgaa aaattccgtg gcgcgcgcct gttcctgcaa
      901 tccggcctgt tgagcgtcgt gtgcagcaac aacgagcagg aagaagcgcg cgaagaaatc
      961 gagattgcct atcagggcgg cgaactcgaa gtcggtttca atatcggcta tctgatggac
     1021 gtgttgcgca acatccattc cgacgatatg cagcttgcct tcggcgatgc caaccgctcg
     1081 acgctgttta ccgtgccgaa caatccgaat ttcaaatata ttgtgatgcc gatgcggatt
     1141 tgacggtttt ccggagcacg atgcccgtat tggagatatg ccccgaaccg tgcagacgga
     1201 ttcggggttt tgttcggctg tcggaaaggc aatgccgtct ggaatgcggc ggattggggt
     1261 tgggagcgta taggggaagt gcttgtgcgg gaatggcgaa ggtgtgtttt tgattccagt
     1321 ccgccctgtt tagattgctg taaaaccatg ccgtctgaaa cggaaaggtt tcagacggca
     1381 tggtttttga ttggggcggt gcgggtcagc ctccgagcag tgtccacaaa tcgttttgca
     1441 ggtcggcttc gctttcgccc tcggcaggcg cggcgcggat atagccgccg tcgggctgca
     1501 tcagccaggc gtgggtgttg tctgccaatg ccatttccaa accttcgcgg atcacgcgtt
     1561 ttttgagttc gggcgcggta atcggcgcgg cggtttcgat gcggcggaag aagttgcgcc
     1621 ccatccaatc cgcgctggaa ataaaggtat cgtccgcgcc gttgttgtgg aagcaataca
     1681 cgcgcgcgtg ttcgagctgc ctgccgacga tggagcggac gcggatgttt tcggacaagc
     1741 ctttcacgcc ggggcgcaga gtgcacatac cgcgcacaat caaatcgatt tgcacgcctg
     1801 ccgcgcttgc ccgatacagg gcttcgatga cggtcggttc gatgagcgaa ttcatcttgg
     1861 cagtaatccg tgccggcttg cctgctttgg cgtgttcggt ttcctgcctg atgcgtccga
     1921 taaccatttt gtgcagggta aacgggcttt gatagagctt gttcagacgg ccgggtttgc
     1981 ccaaacctgt gatttccata aacaatgtgt tcacatcggc ggtgatttgt tcgtcggcgg
     2041 taatgatgcc gaagtcggtg tagatgcgcg atgtgccttg gtggtagttg cccgtgccga
     2101 ggtgggcgta acgcttgagc acgccgtctt cgcggcggat gaccagtgcc atcttggcgt
     2161 ggattttgta gccgaacacg ccgtacacga cgtgcgcgcc cgcctcttcg agctgcttcg
     2221 cccagttgac gttgttggct tcgtcaaaac gcgccatcag ttcgacgacg acggttactt
     2281 gtttgccggc gagtgccgcc ttcatcaggg cgcggacgag ttcggagcgc gtgccggtgc
     2341 ggtaaatcgt cattttgacg gcaagcacgg cggggtcggc ggcggcttcg cgcatcattt
     2401 cgacaacggg gtcgaaggat tggtaggggt ggtgcagcag gatgggcgat tggcgcacca
     2461 aatcgaatat ggacgcggtt ttgcccaagg ctttcagcct gcccggcgtg tgcggcggga
     2521 atttcaaatc ggggcggttg accaaatcgg ggacggcgtt gaggcgcacg aggttcacgg
     2581 ggcctttgac ttggtaaagt tcgtcggcgg tcagcctgaa ttgcgacagc aggaagtcgc
     2641 ggatgcgggc gggacaggtg tcggcgactt cgaggcgcac gccgtcgccg tattcgcggt
     2701 cgtgcaactc gttttgaacg gcggcgcgga ggttttgcac gtcttcttca tcgacgttca
     2761 agtcgctgtc gcgcgtcagg cggaactggt ggcagccttt gacgttcatg cccgggaaga
     2821 gtttgccgac gtgggcgtgc aggatggagg agaggaagac gaagccgtgt ccgccgccac
     2881 acagttcgga cggcagggga acaacgcgcg gcaggatgcg cggtgcctgc acaatcgcca
     2941 tccccgaagg cctgccgaac gcgtccgtgc cgtcgagttc gacggcgaag ttgagcgatt
     3001 tgttcagcgg tcgcgggaag gggtgggacg ggtcgagtcc gatgggggtc aggatcggca
     3061 gcagttcgcg gtcgaaatag tcttcgatcc attttttctg cgcgcccgtc cagttgcggc
     3121 ggcggtaaaa atggatgctt tcccgcgcca actcgggctg aaggacgttg ttgaacaggt
     3181 cgtactggtg ccgtatcagg gagcgcgccg cttcggtaac gtcggcgatg gtttcagacg
     3241 gcattttgcc gttgtccagc ctgcgccggg ggtgcagctt gttttcacgc ttgagccacg
     3301 ccatgcggac ttcgaaaaac tcgtcaagat tggacgacac gatgcacagg aagcgcaggc
     3361 gttccaaaag ggggacgttt ttgtcttccg cctgtgccaa cacgcggcgg ttgaatgcca
     3421 gcaggcttag ttcgcggcag aggatgcggt tttgttcggg cataaggttc tcccaaagat
     3481 ggttgttgtt cggtcggagc gggcaggcaa tgccgtctga aggcttggcg gcatctgcgc
     3541 cggtttcaga cggcatgacg tggcggacag cctgtttcag gcatcggggc aatgtgaaaa
     3601 cagataccgg cgcgtgcggt atccgtctgt ttcaaatcac ttccaacaca aaataatgac
     3661 gcagtttttc gtacaccgca tcgctgacgt tgatgcagcc gttggtcata atcctgtcgg
     3721 acacggacgg ggaggcgatg cgttcgttcc gcctttccga cggtatctga ttccaaacgc
     3781 ggtgcagggc gaaaagaaaa tcaccctcct gcttgaaacc gatgacttcg ccgccgtatc
     3841 caggcttgtc ggtactgttc agcgtcagcc cgaacgtccc cttgggcgtg gcaacaccga
     3901 tgaggacggg gtggcactga cggtcgtcag cgaaacagag ttccgctttg gatgtatcga
     3961 cgatgacttt tttcttttgg atataggcat tgatcgcatc cggttgcccc tgtgcatata
     4021 cgggggcaac cattgacagg ccgcataata tccctaaaaa caggcggaac ggcatgtcgg
     4081 attattggcg gatacgtttc ggttttgccg gcacgatttc gcggatgatg acttgcggct
     4141 cggctttggg tgcgggcggc ggacaggcgg catctttcgg gaagacgggg ttccagtaga
     4201 agctgcgggc aaatttgtct ttatcgaaaa tcactttgta ttggcaggta gtaacatctt
     4261 ctacgccgga agtgttttca gggtcgatac ctacgcccgg ggtatggaag tggaacaggt
     4321 aatcccattc gcgcacgccg tacatacctt cgtcgtaatg cgggcggccc aggattttgt
     4381 agatgtcgtc tttggtcagg ccggggcgca tctgatccag ttcgtcataa gtcgggaatg
     4441 tgccgcgctt gttgtcgagc gttacggaat agggtttcgg gaaaaccgga ttgtcggtcg
     4501 tgccgtcggc tttgacgttg cttttggttg cgcaggcaga cagaacgccc gccgccaata
     4561 ctgccaagcc cggtttgacg atttgtttga ttttcatatg cagaatcctc ttttacccga
     4621 tgcccgtctg ccttttgttc ggaagagccg catcaggaga gttttaaaca tttgattttg
     4681 gtttgtaata ttagcataaa aaacgtgcgt atcaataaac gcggtgtatt tgtacggcat
     4741 acggaataat gcgcgtgcga atttacgcat cctgccggca atctgccgat tcgccgcttc
     4801 cggcaacctg ttataattga tgccgacttt atttttccaa cgtttttaag cgaaaacaga
     4861 atgactatgc aagaacaata tcaacccgcc gccatcgagc ctgcggcgca gaaaaaatgg
     4921 gacgacgccc gtattttcaa cgtctccgaa gacgcttcca aacccaaata ttattgcctc
     4981 tccatgttcc cctatcccag cggcaagctg catatggggc atgtgcgcaa ctacaccatc
     5041 ggcgatgtat tgagccgctt caaactttta aacggcttca acgtcatgca gcctatgggt
     5101 tgggacgcgt tcggcatgcc ggcggaaaac gcggcgatga aaaacaacgt cgcccctgcc
     5161 gcttggacgt acgataacat cgaatacatg aaaacccagc tcaaaagcct gggttttgcg
     5221 attgactggg cgcgcgaaac cgcaacctgc aaacccgaat actaccgctg ggaacaatgg
     5281 ctgtttacca agctgtttga aaaaggcatc gtctatcgca aaaacggcac ggtaaactgg
     5341 gatccggtcg accaaaccgt ccttgccaac gagcaagtca tcgacggacg cggctggcgt
     5401 tccggcgcat tgatcgaaaa acgcgaaatc ccgatgtatt acttcaaaat cacggattac
     5461 gccgaagagc tgctcaacga cttggacaag ctggaacact ggccggaaca agtcaaaacc
     5521 atgcagcgca actggatcgg taaatctcgc ggcatgaccg tgcgcttcgc cgtttcagac
     5581 gacagcaaac aaggtttgga aggcgattac gcgaaattcc tgcaagttta caccacccgc
     5641 cccgacacgc tgatgggcgc gacttatgtc gccgttgccg ccgagcatcc gctggcaacc
     5701 gccgcagccg ccgacaaacc tgaattgcaa gagtttatcg ccgaatgcaa agccggctcg
     5761 gtcgccgaag ccgatatggc gacgatggag aaaaaaggcg tgccgaccgg ccgctacgtc
     5821 gtcaacccgc tcaacggcga caagctggaa gtgtggattg ccaactatgt attgtggggc
     5881 tacggcgacg gcgcggtgat ggcggttccg gcgcacgacg aacgcgattt tgagttcgcc
     5941 accaaataca atctgccgaa aaaacaagtc attgccgtcg gcgacaacgc atttgacgaa
     6001 aaccaatggc aagaatggta cggcgacaaa gaaaacggcg tattggtcaa cagcggcgac
     6061 ttggacggct tggattttca gacggcattc gacgccgtcg ccgccaagct gcaaagccaa
     6121 ggcgcgggcg aaccgaaaac ccaataccgc ctgcgcgact ggggcatttc gcgccaacgc
     6181 tactggggct gcccgattcc catcgtccat tgcgaacaat gcggcgacgt acccgtccct
     6241 gccgaccaat tgccggtcgt tttgcctgaa aacgtcgtac ccgacggcat gggttcgccg
     6301 ctggcaaaaa tgcccgagtt ttacgaaact gcctgcccat gctgcggcgg cgcggcgaaa
     6361 cgcgaaaccg acaccatgga caccttcatg gaatcgagct ggtatttctt ccgctacatg
     6421 tcgccaaaat tttcagacgg catggtcgat cctgccgccg cgaaatactg gggcgcggtc
     6481 gaccaataca tcggcggcat cgaacacgcg attttgcacc tcttgtacgc gcgtttcttc
     6541 accaaactga tgcgcgacga aggtctagtc aatgttgacg aaccgtttga acgcctgctg
     6601 acgcaaggca tggtcgtttg cgaaacctac taccgcgaaa acgacaaagg cggcaaagat
     6661 tggatcaacc ccgccgatgt cgagctgacg ttcgacgaca aaggccgccc catttccgcc
     6721 gtcctcaaag ccgacgggct gcccgtcgtc atcagcggca cggaaaaaat gtccaagtcc
     6781 aaaaacaacg gcgtcgatcc gcaagaactg attaacgcct acggcgcgga caccgcccgc
     6841 ctgtttatga tgttcgccgc accgcccgaa cagtccctcg aatggagcga cagcggcgtc
     6901 gaaggcgcac accgcttcct gcgccgcctg tggcgtaccg tttacgaata cttgaagcaa
     6961 ggcgaagcgg tcaaagcgtt cgcaggcagc caagacggtt tgtctaaaga actcaaagac
     7021 ctgcgccaca aactgcacgc gaccactgcc aaagtcagcg acgactacgg ccgccgccag
     7081 cagttcaaca ccgccatcgc cgccgtgatg gaattgctca accaatacga caaaaccgac
     7141 accggcggcg aacaaggacg cgccgtcgcc caagaagtat tggaaaccgc cgtacgcctg
     7201 ttgtggccca tcgtgccgca catctgcgaa accctgtgga gcgaattgaa cggcgcgaaa
     7261 ctgtgggaag caggctggcc gacagtcgac gaagccgcct tggtcaaatc cgaaatcgaa
     7321 gtgatggttc aagtcaacgg caaactgcgc ggcaaaatca ccgtcgccgc cgacgcctcc
     7381 aaagccgacc tcgaagccgc cgcccttgcc actgaaggcg cggtgaaatt catggaaggc
     7441 aagcccgcga agaaaatcat cgtcgtaccg ggcagactgg tgaacatcgt cgtctaaacc
     7501 gctcttaagg tttagccaca cggataaagg ccgtctgaaa cttggaaaca gggtttcaga
     7561 cggccttttt aaggcagatt gggttgtctg cattacagac ctcaaatata gtggattaac
     7621 tttaaaccgg tacgacgttg ccccgccttg ccctgctgtc tgcggcttcg tcgccttgtc
     7681 ctgatttttg ttaatccact aaaactgaaa tctcaaaatc caaaacatga atttattttt
     7741 cgataccaaa ttgggaaagc aacaaaataa agcaacccat aaaatccgtg taatgagtga
     7801 ggcttggctg gaaaaaaacg gctactgccc ctgttgcgga agcaagccga tgcagagatt
     7861 tgccaataac aaacctgttg cagacctctt ttgctcaaat tgccacgagc aatatgaatt
     7921 aaagagtaaa aatcaaaaaa ccataggtaa cagtgtgcct gacggtgcat atcgcactat
     7981 gttggagcgc atccggtcag ataccaaccc caactttttc tttcttgcat ataaaaaagc
     8041 ggattactct atacggcaat tggtgcttgt acccaaacat ttcatcacgc cggacatgat
     8101 tattcccaga aataaaggca ttaaaaaccg gccgcaccac attatgtgtt ccatcaatct
     8161 cgcccctttg cccgaaagcg gcaaaatatt cttaatagac gattcccgca ttatcgaacc
     8221 cgaaaccgtt ctgaaaaaat ggcaatccaa tctgttttta cgcaaccaaa atgcggagcg
     8281 caaaggctgg cttttggctg ttatgaaatg tatcgaccaa cttcccgaag aattcacatt
     8341 gtcgcaaata tatgaatttg aaaacaaact atccatccaa tttccccaaa acaaccatat
     8401 cagagacaaa atccgccaac agttgcaaat tttgcgcgac caaaatacga tcgaattcat
     8461 tggtcgcgga ctttacaaaa aaatcgacaa attgcccccg acttccaagg cgttttaatt
     8521 tcaaatcatg atactgaatt cacaagggat atttattctt ctgttattct gaaagcagtt
     8581 gaagtacagc acaatattgc cgcaaaaggc agcagccgta agaaggtcgg ggaattattg
     8641 gcaatttatg cgtgatttcg acaaattggc tgaagaagct gccgaacacg ccgctgaagg
     8701 cgcggtgaaa ttcatagacg gcaagcctgc caagaaaatc atcgccgtac cgggcagact
     8761 ggcgaacatc gtggtgtaaa tctttttaaa aacatcaaac aatgttaaga tgccgtccga
     8821 aatccgtttt agattcagac ggcatttttt aaatttaatt ttttaagggg taagcctaat
     8881 atgaaatttc cttccttcct tccttccttc ctttaaacgg atactctgcc tgtcggcagt
     8941 aatctcggta ttgggggctt gtacggtcgt tgctgatgtt tacggtcagg attccgccac
     9001 aatgaacgct gcggctgcca aagattatat gaaaacggtt gagttgaaca agtctgccgg
     9061 caatgtcgat accacatcca gaacagcccg cagggtgcag gcagtatttc gacgtatgct
     9121 gccttatgcc gatgcggcaa ataataccgg ccataggttt gactggaaaa tgacggtttt
     9181 caaaaacgat gagctgaacg cgtgggcgat gcccggtgga aaaatggcgt tttatacggg
     9241 gatagtcgac aaactcaagc tgaccgatga cgaaattgcc gccattatgg ggcatgaaat
     9301 gacgcacgcc ctgcatgaac acggtaaaaa taaggtcggg cagcaaatct tgaccaatac
     9361 ggcggcgcag ataggcacgc agattatatt agacaaaaaa ccggatacta atccggaatt
     9421 ggtcggattg ggtatggata ttttggggac gtacggtctt accttgcctt atagccgcag
     9481 cttggaagaa gaagccgatg aggggggaat gatgttgatg gcgcaggcag gctatcatcc
     9541 ggcggccgct gtcagggttt gggaaaaaat gaatcaggaa aacgaccaaa acggctttat
     9601 ttatgctatt acctctactc atccgacaaa caatgcccgt atagaaaatc taaaacggtt
     9661 gttgccgacc gttatgccgg tttatgagca aagtgtcaga aataaggggc gcgttaataa
     9721 aaaacgtcgg cgttaaggga aggggatcga gaatttgagc cattgtttca aaatgccgtc
     9781 tgaaatcgtt tgagattcag actgcattta aacagttctg tgccccaccc gttttgcctt
     9841 caagcccgcg ccgcttaaat ccaatccccc cctgcaacgg gcgcaaaaaa tccccgtacc
     9901 tcgcggtcgg tgatgtttcg ggtttcgcgc ccgtctgcgc cgtgccttgc tgtcgggcta
     9961 tgtcgtctgc accgccgccg tttcggcttg gtttgatgcg gtcgggcatt tatgcggcta
    10021 cgccctgata ttcagttcgg cggtcttgcc tgtcttggca ggcatattca gcagcgcgtc
    10081 tattgtgaac ttgctgattt tgccgtttgc caagtcggct acgcaatggc ttcgatgccc
    10141 ttgtttttga cgatggtcag cagcttcaac gccgcgccgc tcggcttttt aacgccccgc
    10201 tcccaagccg aaacgtgatt ttttcccacg ttgagataga tggcgaaagc ggcttgcgat
    10261 agtgcctcct tctccctgat tgccttgatg tccccgccgc tcaacggttt gatttcggtc
    10321 aggcaggact tgtcaaagcc gcgcatagtc tttttgtcga ttgcgccgat gttgtaagcc
    10381 ccttccatca tttcatgaat ggcggctaat gcctcgcttt tgtatttcat gattctatct
    10441 ccgtgataat gccgtcttct ttcaaagccg ccagctctgc ccgcgtgtat ttcagataat
    10501 atgcggcggc ttttcggtaa acgtccagtt ctttatccga aatgttttcc ctgtcgttct
    10561 tggcaaaggc gtaaacgaaa aatgccctat ctgcctgttt gaacaatatc aggctgcgat
    10621 agccgccgct tctgccttgt ccttgccttg ctatgcgctg cttaatcaca ccgccgccta
    10681 aatctgcgtc tatcagcccg ttatccgccc gctctaccgc ttccagcagc tcggaatcgt
    10741 tgattttgtg cttcttggca aatttcacta tccattggtt tttgaatatc cgcattgtgt
    10801 agccgttgat tagtgatact tggaattata ccagagacag gcaaggcggc aagtcgcctt
    10861 tttataccct gcaatttctc cgtttatgcc gcctgaaaca ccggcggcta acctgattat
    10921 tttttaatca atcgctttta atggctcaaa ttgcgttttt agcgcgtttc gctgtcttcc
    10981 tatgccagta tataaccaag cggtttaacc gccattcctg ctcaaaatag gcgcggttcc
    11041 gtgcgttttg gcttttcatt ccgctacgct cccactgcca agacggtgaa aaaccggaaa
    11101 acccggaaaa ccccaaaagt tgttaccgat tcgttaccat ttgttaccgc atttgttacc
    11161 aattttttat ctttttctta ttttatagtg gattaaattt aaaccggtac ggcaaggcga
    11221 ggcaacgccg taccggttta aatttaatcc actatagtat aggttttttc caaaaaccca
    11281 aaaaaaaccg ctctgcatct tggacggttt ccccctcatt ccctacggtg cgtcagtatt
    11341 ccccgcaagc tatttcccgc ttggcattcc tgatttggtg gtcgttcagc tttatttttg
    11401 cggtattttt tcgaggtatt tttcagatac cgcaaaagat accgtaaatt ttaggttact
    11461 tcaattaggc tgaattaaac ggaattatac aatcaggaag aagacaatag gatagcaacc
    11521 agtctgaaag ccttgtattg attgggattg gttgacggca ttagacagga ttaaacgaaa
    11581 aaaacgctta gaatttctaa gcgttttgtg tgttggtgcc gacagcgaga tttgaactcg
    11641 cacagcctac ggccactacc ccctcaagat agcgtgtcta ccaatttcac catgtcggca
    11701 tttgaaaaac tgttatttct gctgctgagg aacaggggca gaaggttcgg tattgcttac
    11761 gggtttgggt gcttgctgag tttgttgtac gttgctgaag tccaaaccgt gttttgttgt
    11821 gtgggtgtga atatacacca tagccatgca ggttgcaaag aaaaatgttg ctgcaacggc
    11881 ggtcgagcgg ctgaggaagt tagcgttgcc ggcagagccg aatacgcctt gcgcgctgcc
    11941 gcttcccgat ccgaaagtcg cgccggcatc cgcgcctttg ccgtgttgga gcaatactaa
    12001 cacgatgacg gccaaagcgg aaattatatt aacaatccaa attagggttt tgaaggcttc
    12061 catatttttc tacgcatttt gtgcggcact gatgatggcg gtaaaggagt cgtacgacaa
    12121 tgacgcgccg ccgacgagtg cgccgtccac ataaggtact gcgaagatgt cggccgcgtt
    12181 gtccgctttc acacttccgc cgtaaaggac acggatttta acatcgcttc cgcacaaaga
    12241 caagatttct ttgtagatga atgcgtgcat atcggcaatc tgttcgacgg tggcgacttt
    12301 gccggtgccg attgcccaga cgggttcgta ggcgacggcg atgtttttgg tgtccagtcc
    12361 ttggaggatg gaaagctgat gggcgatgac ttcgtgttct ttgccggctt cgcgctcttc
    12421 gaggctttcg ccgacgcaca ataacgggat gagtccgacg ttgaggacgt tttccatttt
    12481 gcggcgttgg atttcgtttt tttcgccgaa ataaaggctg cgttcggagt gtccgatgag
    12541 gacgatgtct gtgccggtgt cggcgagcat ttcggcggac acttcgccgg tgtacgcgcc
    12601 gttgtcgggg aagcggctca cgtcttgggc gcaggtgagg atgcggttgt ttaagacgat
    12661 ttgcatggcg ttgtgcagtt gcagcaggta aacggtcggg gcggcgagtc cgatgaggac
    12721 gcgttcggcg gtggggagga tgcggaagcg gtgcatcagt gcgttgttgt tttggagccg
    12781 gccgttcatt ttccagttgc cgatgaccca tttttgatcc cacattccga tttggcgata
    12841 catctttttt gctccgtgtc gtgttttttc tgtctgccgc gtgtggcgcg ttgcaatgtg
    12901 aagtttagtg gatatgcggc gggttcgcaa cttggggcgg gcggctgcgg gggcggttcg
    12961 gaatgttgtt tcgggcaggt tgttttataa tggccgcctg atatgtatgc aactatagga
    13021 gatgtgatgc acgcgcttca tttttcggct tcggacaagg ccgcgcttta tcgggaggtg
    13081 ttgccgcaga ttgagtctgt ggtggctgac gaggcggatt gggtggcgaa tttggcgaac
    13141 acggcggcgg ttttgaagga ggcgttcggt tggttttggg tgggttttta tttggtcgat
    13201 acgcgttcgg acgaattggt tttggcaccg tttcaggggc ctttggcgtg tacgcggatt
    13261 ccgttcggtc gcggggtgtg cggtcaggct tgggcgaagg gagagacggt ggtcgtcggg
    13321 gatgtcaacg cgtatcccga ccatattgcc tgttcgtctt tgtcgcgttc ggagattgtc
    13381 gtgccgctgt tttcagacgg ccgctgtatc ggcgtgttgg acgcggacag cgaatatttg
    13441 gcgcagtttg atgagacaga tgctttgtat ttgggcgagc tggcgaagat tttggagaag
    13501 cggtttgagg cttcgcgtca ggcggtttga gtgagggaaa ggggcgggcg gcgcgtgccg
    13561 aagttggcgc ggcgggagtg tggttttata atgcctgcta ttgttggaac aattatttga
    13621 cggagcacta aatggatttt gaaaaagcgc ggttcaatat ggtcgaacag caaatccgtc
    13681 cttgggatgt attggatttt gacgttttgg acgctttggc ggagattccg cgcgagcttt
    13741 ttgtcgatga ggacttgcag ggtttggcgt atgcggatat ggcgctgccg cttgccaacg
    13801 ggcataagat gctcgagccg aaagttgtgg cgcggctggc gcagggcttg aagctgacga
    13861 aaaacgatac ggttttggaa atcggcacgg gatcgggcta tgcggccgcg ctgttggcga
    13921 aactggctgg tcgtgtggtt tcggacgaca tcgatgccga acagcaaaag cgcgccaaag
    13981 cggttttgga cggcttgtct ttggaaaaca ttgattatgt gcaaaacaac gggctgaccg
    14041 aactttccgc aggcgcgccg tttgatgcgg tttatgtcgg cggcgcggta aaccttgtgc
    14101 ctgaagtgtt gaaagaacag ttgaaagatg gcggacgcat ggcggttatc gtaggccgca
    14161 agcctgttca gcgcgcgctt ttgattacgc gcaagggcga tgtgtttgaa gagaaggtgc
    14221 tgttcgatac tttggtggcg catttggatg ataaggatgc cgatccgttt ggcggtttcg
    14281 atttttaaga tgttgacagg tcatgccgtc tgaaagcggg tttggggctt cagacggcat
    14341 tttgcttggt ttttttgggg gggtgcgatg gatattgtgc aacttgggcc cgcggaattg
    14401 aaagcgtgga tggacgaagg gcggatgttt tgtttgttgg acgtgcgtac ggatgaagaa
    14461 acggcggttt gttcgctgcc aaatgcgctg catatcccga tgaatctgat tccgctgcgg
    14521 cagaacgagc tgccggatga tgtgccgctt gtggtgtatt gccatcacgg tatccgcagt
    14581 ctgcatacgg cgatgtattt ggcggacgcg ggttttgaaa acctgtacaa ccttcagggc
    14641 ggcatcgatg catgggcggc cgagattgac ggcaacatga tgcgttattg aggcaggcat
    14701 ttcagacggc attccttaaa tgcgtgtacc tgtggtgttc caaaaggtcg tctgaaagtg
    14761 cagcttctgc gaagctaaag cgcggtatca acgaagttaa aatttgcctg aaccttaaag
    14821 gcagcctgca ccccaatccc ctctccccgt gggagagggc taggacgagg ctggcaaact
    14881 gaaagtttgc ttgggcggca ttttcaatgt gcaggctg
//
LOCUS       DAXHNP010000034        14823 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.034, whole genome shotgun sequence.
ACCESSION   DAXHNP010000034 DAXHNP010000000
VERSION     DAXHNP010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14823
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.034"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..311
                     /locus_tag="ACFM5C_000781"
     CDS             <1..311
                     /locus_tag="ACFM5C_000781"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068526.1"
                     /translation="DTTLVLVSVISSFFSSREYIDSRRQVLDTAFSYKSDGRMVLFKS
                     IKQESISFLSEDLKKDWMFHKVKTGEKDGYGSDEMLSVPRVYLEMMSRKTGVPYSSIL
                     "
     gene            complement(758..1120)
                     /locus_tag="ACFM5C_000782"
     CDS             complement(758..1120)
                     /locus_tag="ACFM5C_000782"
                     /inference="COORDINATES: protein motif:HMM:NF018933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HFC6068527.1"
                     /translation="MKAARRQLYYTFANRIAEQSRIICIKKLNLLNLQCIQIEVNKLH
                     QKIVAPSPLLHTLKEGVAKNGVHIEEIKANATSQSCYSCGRLNKRIGVAATRTNMVCE
                     GFGRHYDTDENASSNIRK"
     gene            1493..2920
                     /locus_tag="ACFM5C_000783"
     CDS             1493..2920
                     /locus_tag="ACFM5C_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6068528.1"
                     /translation="MKISRPLEFTLLQQEYMQHLTERMTQIAKLLNSSANNPDIDIPD
                     FLTEIKDYSEFSVTDENGTYLHWDKFRQIHTEDTRMKWRAVKESRKKIQKPIDFPFEH
                     QFWFCIPDSLQARLHLIDKSCGSSIGTSSLGGFGRSEQNRFLLKSLIMEEAITSAQLE
                     GAATTRKVAKDMLKSQRKPKTKDEIMIVNNYHLMKKAVELKNTPLSVEMILDLHRIAT
                     SNAIENKADPGQFRRDDEIFIADNDGNSLYQPPPHGQVHTLMEAVCTFANNTYDGVEN
                     PFIHPVVQAIILHFLIGYIHPFGDGNGRIARALFYWFMLKNSYWLFEYISISRLLKNA
                     PAQYAKSYLYAETDDSDLTYFIYYQCDIIKRAVADLEHYISDKQKHQQEFKAAIAQYT
                     EKIGKLNQRQIGILQKAVEESGKIFTALEIANQYGISLNTARSDLSKLGEYRFLVPFK
                     SGNALEYVAPQDLLERLEKKNSLLA"
     gene            3309..3773
                     /locus_tag="ACFM5C_000784"
     CDS             3309..3773
                     /locus_tag="ACFM5C_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068529.1"
                     /translation="MLHIPPTEPDRYVSSIVALNVHSSNGTGDWHSAAALNDDAYPQD
                     FYIYGKDQTRSTLHLLGNVGVIDGTNRFNEMGYYPENIPVWLADHPRACVDYLYTAVL
                     QTGSIGRVILDDWFPSDEDKQSVYDLLNQIEPHLNTQEWENLQLWKRKNPIM"
     gene            3900..5189
                     /locus_tag="ACFM5C_000785"
     CDS             3900..5189
                     /locus_tag="ACFM5C_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HFC6068530.1"
                     /translation="MMKSILTVSGNRMRKPRITHLDVWANDERIGTLEKGAMYRFTYD
                     NPGSPLLGLHYQDRGKVYISNNMPHIFAQYFPEGFLDAHITSKYAFHDAPFEDNEMLR
                     LAILGRETLGRIHVRCNDPLFNEWIDGLEMKNPRILTERDLLGINARQVFQQYMAEIF
                     HHGRFVSVSGIQQKMSLDAISRNTKQTASYIAKGFDASEYPCLAANEFLCMQTIKQAG
                     IPVAQTSLSEDSSVLLVRRFDVSEQEYFLGMEDFTSLRQYSAEDKYKGSYAAIAQIIR
                     QISGRPDEDLIHFFNQLAASCILKNGDAHLKNFSVLYHDEYDVRLAPTYDVLDTSIYR
                     VGTQGIFDAYDDTLALNLTNHGKKTYPSKNTLLDFAEKYCDLGREDASFMIDTIVQAK
                     EQVLVKYSDVLRENEWLAQKWHFIPDENEEGLPFTFR"
     gene            complement(5526..7313)
                     /locus_tag="ACFM5C_000786"
     CDS             complement(5526..7313)
                     /locus_tag="ACFM5C_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HFC6068531.1"
                     /translation="MKLPLSYLPNIRFLSWCCLLAGIIAPATLLASPNPAEIRMQQDI
                     QQRQREEQLRQTMQPESDVRLHQKNTGETVNQLMGDDSSQPCFAINEVVLEGEHHDRF
                     QFALKRALRETGFQAGKCLHAGNINQIMSLAQNALIGRGYTTTRILAAPQDLNSGKLQ
                     LTLIPSYLRSIRIDRSNDDQTHAGRIAAFQNKFPTRSNDLLNLRDLEQGLENLKRLPT
                     AEADLQIVPVEGEPNQSDVVVQWRQRLLPYRVSVGMDNSGSEATGKYQGNITFSADNP
                     FGLSDMFYVNYGRSIGGTPDEESFDGHRKEGGSNNYAVHYSAPFGKWTWAFNHNGYRY
                     HQAVSGLSEVYDYNGKSYNTDFGFNRLLYRDAKRKTYLGVKLWTRETKSYIDDAELTV
                     QRRKTAGWLAELSHKEYIGRSTADFKLKYKRGTGMKDALRAPEEAFGEGTSRMKIWTA
                     SADVNTPFQIGKQLFAYDTSVHAQWNKTPLTSQDKLAIGGHHTVRGFDGEMSLSAERG
                     WYWRNDLSWQFKPGHQLYLGADVGHVSGQSAKWLLGQTLAGTAIGIRGQIKLGGNLHY
                     DIFTGRALKKPEFFQSRKWASGFQVGYTF"
     gene            complement(7368..7826)
                     /locus_tag="ACFM5C_000787"
     CDS             complement(7368..7826)
                     /locus_tag="ACFM5C_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009404 - toxin metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HFC6068532.1"
                     /translation="MPIISTLNILSPKLYPSEPYNESEALGAITWLWYQSPTHRQVPI
                     VEMMTYILPVLKNGQFALFCKGTQPIGYISWAYFDEVAQAHYLESDRHLRDNSDWNCG
                     DNIWLIQWFAPLGHSHQMRSAVRQLFPSTTVRALYHKGSDKGLRILTFKT"
     gene            complement(7992..8327)
                     /locus_tag="ACFM5C_000788"
     CDS             complement(7992..8327)
                     /locus_tag="ACFM5C_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068533.1"
                     /translation="MKQILFKYFMLITCVFGLSSCGYLLSFGQLMFDGSCADWNCSKP
                     TPRWRKAVDDCENRNLEIIKQRFGYKDYAEVIFSEVGQQIQIPYQCRQSNGGYDIRKD
                     KQYGHLFVQ"
     gene            complement(8308..>14823)
                     /locus_tag="ACFM5C_000789"
     CDS             complement(8308..>14823)
                     /locus_tag="ACFM5C_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HFC6068534.1"
                     /translation="IDANGRLVNSGTMAAANAKDTDNTAEHKVNIRSQGVENSGTAVS
                     QQGTQIHSQSIQNTGTLLSSGEILIHNSGSLKNETSGTIEAARLAIDTDTLNNQGKLS
                     QTGSQKLHIDAQGKMDNRGRMGLQDTAPTASNGSSNQTGNSYNASFHSSTTTPTTATG
                     TGTATVSISNITAPTFADGTIRTHGALDNSGSIIANGQTDVSAQQGLNNAGQIDIHQL
                     NAKGSAFDNHNGTIISDAVHIQAGSLNNQNGNITTRQQLEIETDQLDNAHGKLLSAEI
                     ADLAVSGSLNNQNGEIATNQQLIIHDGQQSTAVIDNTNGTIQSGRDVAIQAKSLSNNG
                     TLAADNKLDIALQDDFYVERNIVAGNELSLSTRGSLKNSHTLQAGKRIRIKANNLDNA
                     AQGNIQSGGATDIGTQHNLTNRGLIDGQQTKIQAGQMNNIGTGRIYGDNIAIAATRLD
                     NQDENGTGAAIAARENLNLGIGQLNNRENSLIYSGNDMAVGGALDTNGQATGKAQRIH
                     NAGATIEAAGKMRLGVEKLHNTNEHLKTQLVETGREHIVDYEAFGRHELLREGTQHEL
                     GWSVYNDESDHLRTPDGAAHENWHKYDYEKVTQKTQVTQTAPAKIISGNDLTIDGKEV
                     FNTDSQIIAGGNLLVQTEKDGLHNEQTFGEKKVFSENGKLHSYWREKHKGRDSTGHSE
                     QNYTLPEEITRNISLGSFAYESHRKALSHHAPSQGTELPQSNGISLPYTSNSFTPLPS
                     SSLYIINPVNKGYLVETDPRFANYRQWLGSDYMLDSLKLDPNNLHKRLGDGYYEQRLI
                     NEQIAELTGHRRLDGYQNDEEQFKALMDNGATAARSMNLSVGIALSAEQVAQLTSDIV
                     WLVQKEVKLPDGGTQTVLVPQVYVRVKNGDIDGKGALLSGSNTQINVSGSLKNSGTIA
                     GRNALIINTDTLDNIGGRIHAQKSAVTATQDINNIGGILSVEQTLLLNAGNNINSQST
                     AASSQNTQGSSTYLDRMAGIYITGKEKGVLAAQAGKDINIIAGQISNQSEQGQTRLQA
                     GRDINLDTVQTGKHQATHFDADNHVIRGSTNEVGSSIQTKGDVTLLSGNNLNAKAAEV
                     SSANGTLAVSAKNDINISAGINTTHVDDASKHTGRSGGGNKLIITDKAQSHNETAQSS
                     TFDGRQVVLQAGNDANILGSNVISDNGTRIQAGNHVRIGTTQTQSQSETYHQTQKSGL
                     MSAGIGFTIGSKTNTQENQSQSNEHTGSTVGSLKGDTTIVAGKHYEQIGSTVSSPEGN
                     NIIHAQSIDIQAAHNKLNSNTTQTYEQKGLTVAFSSPVTDLAQQAIAVAQSSKQVGQS
                     KNGRVNAMAAANAGWQAYQTGKSAQNLANGTTNAKQVSISITYGEQQNRQTTQVQASQ
                     AQASQIQAGGKTTLIATGAAEQSNINIAGSDIAGKAGTILIADNDITLQSAEQSNTER
                     SQNKSTGWNAGAAVSFGQGGWSLGVTAGGNVGKGYGNGDSVTHRHSHIGDKGSQTLIQ
                     SGGDTTIKGAQVRGKGVQVNAKNLSIQSVQDRETYQSKQQNASAQVTVGYGFSASGDY
                     SQSKIRADHASVTEQSGIYAGEDGYQIKVGNHTDLKGGIITSSQSAEDKGKNRFQTAT
                     LTTSDIQNYSQYQGKSFGLGASVAVSGKTLGQGAQNKPQNKHLTSVADKNGASSSVGY
                     GSDSDSQSSITKSGINTRNIHITDEAGQIRLTGKTAAQTKADIDTNVTTDTAERHSGS
                     LKNTFNKEAVQSELDLQREVTQEFDKTRQGVKQELYAVVDSKREQATKERLKNGGYDN
                     DKSRALNKEANELDEKIRWLDAGLGLVWGAGSSDMAWSMFATTQADRAVRSATAPKEM
                     WFHKKIIDEKTGKVSFDTRQIWSLNDLSKEELASIQDTNGKVITVSNPGIFNNREDSL
                     SNAAKQNRNSTNGSGVIAVMNPPTGKYKSDSNNKIKDSLWLSSSLVSELMYVGYDQLN
                     NKVFQGYLPKTNSEKLNQDIYREVQKMDNGWSVDTSNHSRGGITASVSLKDWVNNKEQ
                     NGIAPIRKARFYGTATNVKNDYADVLQKNGYTYTGADGKTYNSGAYSIVHDKDFVGNK
                     WIPFLLGNNETTKGACKGFCYSHSSYFAEVPEQYQRDENGNIKMENGKPVETENWEDY
                     TKKWGIPKTGADGKYINHAIPKLVNPNNPNGEKYETNPF"
BASE COUNT         3750 a         3174 c         3230 g         4669 t
ORIGIN      
        1 cggatacgac cttagttttg gtatccgtaa tatcatcatt tttttcgtca agggagtata
       61 tcgactctag aagacaggta ttagatactg ccttttctta caagagtgat ggtaggatgg
      121 ttctcttcaa gtcaatcaaa caggaaagta tttcttttct gtctgaagat ttgaaaaagg
      181 actggatgtt tcacaaggtt aaaactgggg aaaaagatgg atatggttca gatgaaatgc
      241 tgagcgtacc ccgtgtctat ttggaaatga tgtcgcggaa aacgggagtc ccctactcca
      301 gtattcttta aagtctaagt agaagacttc ttcgtcggtc tttttttgtt gtttggtttg
      361 catggagtaa aactgtacaa ctgttgaagc ataaaaccag caagaaggta aaaaagaaag
      421 aagcagttct ttggatttta gatgttaccg caattagttt cctttcctaa aatttgttta
      481 aattatttgc aatattaata taaacgagat attaatgatg agaaatcaaa aaggcatact
      541 aaatacaatt tgtacaaaat aattgcagta tttaaaaatg ttgattcgta tatgaaaagt
      601 taaaaatgcc aaaatgtaca gttgctaaac tgtaaaactg ctaaagcaac aaaacataaa
      661 aaggaatgca gggatgcaat cactacatct ttttattccg taagcattta tgactttacg
      721 gtcaactgct actctatgtg cctagctttt cagctcccta ttttcgaata ttggacgagg
      781 cattttcatc agtgtcgtaa tgccggccga aaccctcaca aaccatattg gttcttgtgg
      841 cagcaacacc tatccgtttg ttcaagcgac cacaagagta acatgattgg ctggtggcat
      901 tggctttaat ctcttcgata tgaactccat ttttagctac accttctttc agcgtatgca
      961 acagtgggga tggggcaact atcttctggt ggagtttgtt gacttcaatc tgtatgcact
     1021 gtaggttgag cagattcagt tttttgatac agattatccg gctttgttcg gcaattctgt
     1081 tggcgaacgt atagtagagc tgtcgtcttg ccgctttcaa tttgcggtag gtattttacc
     1141 attccatacg tagccgctcg gtacgtttga gccaaatggt atcttcgcca tttgtaccaa
     1201 ttggttttta cattaggctg tgttttagta atttattaat ttcaattatt tgcaagggaa
     1261 aagacaatta ttttccggtt aggaataaac ctatcctgtt gaatacctta aagccaaata
     1321 cgcctatcaa caccatatta aaacacagcc ttttttaata tagtagacac aatctttccc
     1381 tatttatgaa ggtgatcgct tctttctgat tcgtatttta atgcttccta tttttataaa
     1441 aattgactag aatagctcaa ttattaaaaa ttgcgcgatt ttggtattta tcatgaaaat
     1501 ttccagacct ctggaattta ccctgttgca acaggaatat atgcagcatc tgactgaaag
     1561 aatgactcaa attgccaagc tgctgaattc ttccgcaaac aatcctgata tagacattcc
     1621 cgattttctt actgaaatca aagattattc agaattttcc gtgacagatg aaaatggaac
     1681 ctacctgcat tgggacaaat tccgccagat tcacacggaa gatacgcgga tgaaatggcg
     1741 cgccgttaag gaaagccgca aaaaaatcca aaaaccaatt gatttcccgt ttgaacatca
     1801 gttttggttc tgcattcccg actctttgca ggcacggctt catttgattg acaaaagctg
     1861 cggcagttct atcggcacgt ctagcttggg tggcttcggc agaagcgagc aaaacagatt
     1921 cttgctcaag tctctgatta tggaagaagc gattacatcc gcccaactgg aaggtgcggc
     1981 taccacgcgt aaagtggcca aggatatgct caaatcgcag cgtaaaccca aaacaaaaga
     2041 cgaaatcatg atagtgaaca actatcactt gatgaaaaaa gcggtagaat tgaaaaatac
     2101 gccgttaagt gttgaaatga ttttggattt gcaccgcatt gctaccagca acgctattga
     2161 aaacaaggcc gaccccgggc aattcaggcg ggacgacgaa atctttatcg ccgataacga
     2221 cggcaacagc ctgtaccaac caccgccaca cgggcaggtt catacgctga tggaagcggt
     2281 atgcacgttt gccaacaaca cttatgacgg cgtggaaaat ccgtttatcc atccggttgt
     2341 ccaagctatc atcctgcatt tcctgattgg ctacatccat ccgttcggag atggcaacgg
     2401 gcggatagcg cgggctttgt tctattggtt tatgctcaaa aacagctact ggctgtttga
     2461 atacatatca atcagccgtc ttctgaaaaa cgctccggcc caatacgcca aatcctattt
     2521 gtatgcggaa actgacgatt cagatttaac ctatttcatc tattaccaat gcgatattat
     2581 caagcgggcg gttgccgatt tggagcacta catttccgac aaacaaaaac accaacagga
     2641 attcaaagca gcgattgccc aatatactga aaagatagga aagttgaacc aacggcaaat
     2701 tggtatcctg caaaaagcag tggaagaaag cggaaaaatc tttactgcac tagaaattgc
     2761 caaccaatac ggcatctccc tgaatactgc ccgtagcgat ttgagcaaac tgggagaata
     2821 tagattccta gtaccgttca aatcaggaaa tgctttagag tatgttgctc ctcaggattt
     2881 attggaaagg ttagaaaaaa aaaatagttt gctagcctaa aatgcagctt taaccgagtc
     2941 aaaatcaatg cagtccgcac ctttaaaaag aagctgcgga ctgcttgctt tttgctctac
     3001 aaatgatctt tgtagctgat ttaaccaaga ttgtagcaat tttgctttcc aagcaagcag
     3061 ggttagaaaa ttcgatactt ttaattattg gctgtgtttt aatatgatgt tgataggcgt
     3121 gtttggcttt aaggtattca acaggatagg tttattccta accggaaaat aattgtcttt
     3181 tcccttgcaa gtaattgaaa tcaacagatt actaaaacac agccttacat tattggggtg
     3241 actatcctgt aaaatatgtc ctaaaacgtg gaaaccactt ttgctctgct aaattttaag
     3301 gaatctttat gttacatata cccccaacgg aacctgatcg atatgttagc agtattgtag
     3361 ccttaaacgt gcatagttct aacggtacag gcgattggca cagtgcagca gcccttaatg
     3421 atgatgctta cccccaagat ttctatattt atggcaaaga tcaaacacgt agcacgttac
     3481 atttgcttgg taacgttggt gtgattgatg gaacaaaccg cttcaatgag atgggctatt
     3541 atcctgaaaa catcccagtt tggctcgcag atcacccccg tgcttgcgtg gattatcttt
     3601 acacagcagt gttacaaact ggctcaatcg gtcgggtgat tttagatgat tggtttccaa
     3661 gcgatgaaga caagcaatca gtttatgact tacttaacca aatcgaaccg cacttgaata
     3721 ctcaagaatg ggagaattta cagctatgga aacgcaaaaa cccaataatg taatgctaac
     3781 cgaacgagat aaaaggcacg agaagcggta ttactgaatt tcatccgcaa tacgccatgt
     3841 acaattaaat cagcagatgt gtctaaacgt accgctgttc ccgtttgaaa gaaattttca
     3901 tgatgaagtc tatcctcacc gtatccggaa atcgtatgcg taaacccaga atcacccatt
     3961 tggatgtttg ggcaaacgat gaaagaatcg gtactttgga aaagggggca atgtaccgtt
     4021 tcacatatga caaccccggt tctccattgt tgggtttgca ctatcaggat aggggtaaag
     4081 tatatatcag caacaacatg ccgcatatct ttgcacagta ttttccggaa ggctttttgg
     4141 atgcacacat cacaagcaaa tatgcttttc atgatgcgcc ttttgaagac aatgagatgc
     4201 tgcgcttggc aattctgggc agagagactt tgggtcggat acatgtgcgc tgtaatgacc
     4261 cgctttttaa tgaatggatt gacgggttgg agatgaaaaa tccaagaata ttgactgaac
     4321 gggatttgct gggcataaat gcccgacagg tttttcagca atatatggca gaaatcttcc
     4381 atcacggtcg tttcgtcagt gtatccggga tacagcagaa gatgtcctta gatgccatca
     4441 gcagaaatac caagcaaact gcctcatata ttgccaaagg ttttgatgca tccgaatatc
     4501 cttgcttggc tgccaatgaa tttttatgca tgcagaccat caaacaagca ggtattccgg
     4561 ttgcacaaac cagcctgtcg gaagattcat cagtcttatt ggtacgtcgg tttgatgtca
     4621 gtgaacagga gtatttctta ggcatggaag actttaccag tctgcgtcag tattcagcag
     4681 aagataaata taaaggcagt tatgcggcta ttgcacagat tatccgacag atatccggca
     4741 ggcccgatga agatttaatc cattttttta accagcttgc cgccagttgc atattgaaaa
     4801 acggggatgc acaccttaaa aatttttcag tactctatca tgacgaatac gatgtacgtc
     4861 ttgcacctac ctatgatgta ttggatacat caatatacag ggttggaaca caaggaattt
     4921 ttgatgctta tgacgatacg ctggcattaa acctgactaa ccacggtaag aaaacatatc
     4981 cttccaagaa tacattgttg gattttgctg agaaatattg cgatttggga agagaagatg
     5041 catcctttat gatagataca atcgttcaag ctaaagaaca ggttcttgtt aaatactcgg
     5101 atgtattgcg tgagaatgaa tggttggcgc agaagtggca ttttatcccg gatgaaaatg
     5161 aagaaggtct accgtttaca ttccggtagc tgccgggttt gaaccggctg tcagagatgg
     5221 ccggtcgact ttcaccctga aaatcacttc atcttatggt gtttgaaacc gagaaattag
     5281 aagaatcgta ttcggtagga gatatactag gaagattgga aaactggtaa atcattctat
     5341 tgattgagtt ggcggcctat atgtttaatg taggcaaacg agaaggaatc atgtatttca
     5401 tgattccttc ttaaattcct gtgtcaatct aagatcaaaa cacagccatc tcttaccata
     5461 atcatgatag gtgttttatt atgaaaagct atatctataa ttaccgttga tttgactatg
     5521 ccgttttaaa acgtatagcc tacctgaaaa ccgcttgccc atttccttga ttggaaaaat
     5581 tcgggctttt tcaatgcgcg gccggtaaat atatcgtaat gcaggttgcc gccaagcttt
     5641 atctgcccgc gtatcccaat tgctgtgccg gctagagttt ggcccaataa ccatttggcg
     5701 gattgtcctg aaacatgtcc tacatcagcc ccaagataaa gctgatggcc tggtttaaat
     5761 tgccagctca aatcgttgcg ccaataccat ccccgctcgg cagacaaact catttcaccg
     5821 tcgaagccac gtacggtgtg gtgtccgccg atagccagtt tgtcttgcga tgttagcggg
     5881 gttttgttcc attgtgcatg aacggatgtg tcataggcaa atagctgttt accgatttga
     5941 aaaggagtat ttacatcagc cgatgccgtc caaattttca tacgtgacgt gccttctcca
     6001 aaggcttctt caggcgcgcg cagagcatct ttcatgccgg tgccgcgttt atatttcaac
     6061 ttaaaatctg ccgtactgcg gccgatatat tctttgtggg aaagttctgc caaccaaccc
     6121 gcagttttac gccgttgtac agtcagttcg gcatcatcaa tgtaactttt tgtttccctc
     6181 gtccacagtt ttacaccaag ataggttttg cgtttggcat cacgatacaa caggcggttg
     6241 aagccgaaat cagtattgta actttttcca ttatagtcat agacttccga taatccggaa
     6301 accgcctgat ggtaacggta gccattgtga ttgaatgccc atgtccattt accgaaaggg
     6361 gctgaataat gtacggcgta attgtttgat ccgccttctt tgcgatggcc gtcaaaactt
     6421 tcctcgtcgg gcgtaccgcc aattgaacgt ccataattta catagaacat atcactcagt
     6481 ccaaaaggat tgtcggcaga gaaagtgata tttccttggt attttcctgt cgcctcacta
     6541 cccgaattat ccatccccac actcacacgg tagggcagca gacgttgccg ccattgcacc
     6601 acgacatcac tttggtttgg ttctccctct acgggaacga tttggagatc ggcttccgca
     6661 gtcgggagac gtttgagatt ttccagtcct tgttccaaat cacgcagatt caacagatcg
     6721 ttcgagcggg tgggaaattt gttctggaat gctgcaatac gtcctgcatg ggtttgatca
     6781 tcgttagacc gatcgattcg tatggagcgc agatagctcg gtatcagggt taattgaagc
     6841 ttgccactat tcaaatcctg tggcgcagcc aagatacggg tcgtggtata tcccctgccg
     6901 atcaaagcat tttgtgctaa ggacatgatt tgattaatgt tgcccgcatg cagacacttg
     6961 ccagcctgaa aacccgtttc gcgcaaggca cgttttaggg caaactgaaa ccgatcatgg
     7021 tgttcacctt ccaacaccac ttcgttaatg gcaaaacacg gttggctgct gtcatcgccc
     7081 atcaactgat taaccgtttc ccccgtgttt ttttgatgca aacgcacatc gctttcaggc
     7141 tgcatggttt ggcgcaactg ctcttcgcgt tggcgttgct gaatatcttg ctgcatacgg
     7201 atttcggcag ggttggggga agccaacaaa gtagcaggag cgatgatacc tgccaataag
     7261 cagcaccaag acaaaaagcg aatattaggc aaataggata aaggaagttt catggcatgg
     7321 tcgcaaaatc aataaaatca tcaatgggca ttcaatacac gattgcatca agttttaaaa
     7381 gttaaaattc tcaaaccctt atcgctccct ttatgataca aggcgcgtac tgtcgtacta
     7441 ggaaataact ggcgcacagc tgagcgcatt tgatgactgt gtcccaatgg cgcaaaccat
     7501 tgaatcagcc aaatattgtc gccacagttc caatcgctgt tgtcgcgcaa atggcggtca
     7561 gattctaaat aatgcgcctg cgccacttca tcaaaataag cccatgagat ataaccgatt
     7621 ggttgggtac ccttgcaaaa caaagcgaac tgcccgtttt ttaacacagg caatatatac
     7681 gtcatcatct ccacaatagg tacttggcga tgcgtaggcg actgatacca tagccaagtg
     7741 atggcaccga gtgcttcgct ttcgttatat ggctcactgg gatagagctt gggtgagagg
     7801 atgtttaggg ttgagatgat gggcatattt taagttaggg ttggtgttgg ttaaaacaaa
     7861 aaatggtttc agcctgaaat gaaacatttc acgttaaaac atagctttag catacgagac
     7921 tgaattgtag ggggcaataa gcaacgaccc taccattcaa caattctcgt taattgcaca
     7981 ggttacgctg gttattgcac aaacaaatgc ccatactgtt tatctttacg aatatcataa
     8041 ccaccattac tttgcctaca ttgataaggt atttgaattt gttgtccaac ttcactaaaa
     8101 atcacctctg cgtaatcttt atacccaaat ctctgtttaa taatctccaa gtttctattc
     8161 tcacagtcat caactgcctt tctccatctt ggcgtaggtt tagaacaatt ccaatctgca
     8221 caactgccat caaacattaa ctgcccaaat gataataaat aaccacaact gcttaatcca
     8281 aaaacacaag taattagcat aaaatattta aaaaggattt gtttcatatt tttctccatt
     8341 cggattattg ggattgacta attttggaat agcatgattt atatatttac catcagcacc
     8401 tgttttaggg attccccatt tttttgtgta atcttcccag ttttctgttt caacaggttt
     8461 cccattttcc attttaatat tcccattttc atctctttga tactgctcag gcacttccgc
     8521 aaaataactg ctatgcgaat agcaaaatcc cttacaagct ccttttgttg tctcattatt
     8581 tcctagcaag aaaggtatcc atttgttccc cacaaaatct ttatcatgca cgattgagta
     8641 ggctccgctg ttataagttt taccgtctgc acccgtatag gtatagccgt ttttctgtaa
     8701 aacatcggcg taatcattct tcacatttgt ggctgtacca tagaaacgtg cttttctgat
     8761 tggggcaatg ccattttgct ctttattgtt tacccaatct tttagggaaa cgcttgctgt
     8821 aattccccca cgactgtggt tactggtatc aacagaccag ccattatcca ttttttgaac
     8881 ctctcgataa atatcttgat tcagtttttc tgaattggtt ttgggtaaat agccttggaa
     8941 cactttatta tttaattggt cgtaaccgac atacatcagt tcagaaacaa gacttgaact
     9001 gagccataaa gaatctttta ttttgttatt agaatcagat ttatatttcc ctgttggagg
     9061 attcataact gcaataacac cactaccgtt tgtactatta cgattttgtt ttgctgcatt
     9121 gcttaatgaa tcttctcgat tattgaaaat accaggatta gacacagtaa taactttgcc
     9181 atttgtgtct tgaatgcttg ccagttcttc cttgcttaaa tcattcaatg accaaatttg
     9241 tctggtatca aaggatactt tacctgtttt ttcatctatt atcttcttat ggaaccacat
     9301 ttctttaggt gcagttgcag accttaccgc tctatcggct tgggttgtgg caaacatact
     9361 ccaagccata tcagaactcc ctgctcccca aacgagtcct aatcccgcat caagccaacg
     9421 aattttttca tctaattcat tagcttcctt atttaatgct ctagatttat cattgtcata
     9481 tccaccattt ttgagtctct cttttgtggc ttgctctcgt ttgctatcta ctactgcata
     9541 aagttcttgt ttcactcctt gtctagtttt atcaaactct tgggttactt ccctttgtaa
     9601 atccagttca ctttgcaccg cttctttgtt gaaggtgttc ttcaagctgc ccgaatgtcg
     9661 ttcggcggtg tctgtggtta cgtttgtatc aatatcggct ttggtttgtg ccgctgtttt
     9721 gcctgtcagc ctgatttgtc ccgcttcgtc ggtgatgtgt atgttgcggg tgttgatgcc
     9781 gcttttcgtg atgctgcttt gactgtcgct gtcgctgcca taacccactg atgaacttgc
     9841 gccgttttta tcggctacgc ttgtcaggtg tttgttttga ggtttatttt gtgcgccctg
     9901 tcccagtgtt ttgccgctta cggcaacgct ggcacccaat ccaaaacttt ttccttggta
     9961 ttggctgtaa ttttgaatgt cgctggtagt aagggtggcc gtctgaaagc ggtttttacc
    10021 cttgtcttct gcgctttggc tgctggtgat gatgccgcct ttgaggtctg tatggtttcc
    10081 gaccttgatt tgatagccgt cttctccggc ataaataccg ctttgctcgg ttactgaagc
    10141 atggtcggct cggattttgc tttgactgta atcgccactg gcactgaagc cataacctac
    10201 ggtcacttgt gcactggcgt tttgttgttt gctttgataa gtttctctat cttgtacgct
    10261 ttgaatactt aggtttttgg cattgacttg tacgcctttg ccgcgtactt gcgcgccttt
    10321 gatggtagtg tcgccaccgc tttggataag ggtttggctg cctttgtcgc caatatggct
    10381 atggcggtgg gttacgctat cgccattgcc gtagcctttg ccgacattgc cgcctgcggt
    10441 aacgcctaat gaccagcctc cttgtccgaa tgatacggca gcacctgcgt tccaacctgt
    10501 cgatttgttt tggctgcgtt cggtattgct ttgctcggct gattggagtg tgatgtcgtt
    10561 atcggcaatc aggattgtgc ctgctttgcc ggcaatatct gagcctgcga tgttgatatt
    10621 ggattgttct gctgcgcctg tggcgattaa tgtggtttta ccgcctgctt gaatttgact
    10681 cgcttgggct tggcttgctt gaacttgggt ggtttgtcgg ttttgctgtt cgccgtaggt
    10741 tatggagatg ctgacttgtt tggcattggt tgtaccattg gctaagtttt gtgcactctt
    10801 acctgtttga taggcttgcc agcctgcatt ggcagctgcc atggcattga cacgaccatt
    10861 tttgctttgt ccgacttgtt tgctgctttg tgcgacggca atcgcttgtt gtgccaaatc
    10921 ggtaacgggc gaactgaatg ccaccgttaa gcctttttgt tcataggttt gggtggtatt
    10981 actgtttaat ttgttgtgtg ccgcttgaat gtctatgctt tgggcatgga tgatattgtt
    11041 gccttctggg ctggaaacgg tactgccgat ttgttcgtag tgtttgcctg caacaatggt
    11101 ggtatcgcct ttcaagctgc ctacggtact gcctgtatgt tcgttgcttt gggattggtt
    11161 ttcttgtgtg tttgtcttgc tgccaatagt gaagccgata cctgcactca tcaatcctga
    11221 tttctgggtt tgatgatagg tttcgctttg gctttgagtt tgggttgtac caatgcgaac
    11281 atgattgcct gcttgaatcc gggtgccatt atcggaaata acattgctgc caaggatgtt
    11341 ggcatcgttt cctgcctgca atacaacttg cctgccgtca aaggtgctgc tttgagcggt
    11401 ttcgttgtgg ctctgggctt tgtcggtaat aatcaattta ttgccaccac cgcttctgcc
    11461 tgtgtgtttg gacgcatcat caacatgggt cgtgttgatg cctgcgctga tgttgatgtc
    11521 atttttggca gacacagcga gtgtaccgtt tgcgctgctg acttcggcag ctttggcatt
    11581 gaggttattc cctgacaata gggtaacatc gccttttgtt tgaatgctgc tgccgacttc
    11641 gttcgttgaa ccgcgaataa catggttatc ggcatcaaaa tgggttgctt gatgtttgcc
    11701 ggtttgtacc gtatctaggt taatgtcgcg ccctgcttgc agccgggttt gcccttgctc
    11761 tgattgattg ctgatttgac cggcaatgat gttgatgtct ttgcctgcct gcgctgctaa
    11821 aacacctttt tctttgcctg tgatataaat acctgccatt cggtctaggt aggtgctgct
    11881 gccttgtgta ttttgactgc tggcggcggt gctttggctg ttgatgttgt tgcctgcgtt
    11941 gagcaataat gtctgttcga cagaaagaat gccgccaata ttattgatgt cttgtgtggc
    12001 cgtaaccgct gatttttgcg catgaatacg cccaccgata ttgtctagcg tatcggtatt
    12061 gataataagc gcattgcgcc ctgcaatcgt gcctgagttt ttcaggctgc ctgaaacatt
    12121 gatttgtgta ttgctgcctg acaacaatgc acctttaccg tctatgtcgc cattcttaac
    12181 gcgtacataa acctgtggca ccaatacggt ttgtgtgccg ccatcaggaa gtttaacttc
    12241 tttttgtacc aaccaaacaa tatcgctggt cagttgcgct acttgctcgg cacttaatgc
    12301 aatgccaacg ctgagattca tggagcgtgc cgcagtcgcg ccattatcca ttaaggcttt
    12361 aaattgttct tcgtcgtttt gataaccgtc taaacgacga tgccctgtca gctctgcgat
    12421 ctgttcattg attaaacgtt gctcgtaata accatcaccc aaacgtttat gtaaattgtt
    12481 tgggtctagt ttgaggctgt ccagcatata gtcactaccc aaccattgac ggtagttggc
    12541 aaagcgtgga tcggtttcaa caagatagcc tttattgaca ggattgataa tatataagct
    12601 gctgctgggt aatggggtaa aagaattgga cgtatagggt agcgaaatac cgttgctttg
    12661 cggcaactca gtgccttggc tgggcgcatg atggcttaat gctttgcgat gcgattcata
    12721 ggcaaatgaa cccagtgaaa tgttgcgtgt gatttcctcc ggcaaagtgt aattttgttc
    12781 gctatgtccc gttgagtctc gtcctttatg tttctcacgc caatagctgt gtaatttgcc
    12841 attttcactg aatactttct tttcgccaaa ggtttgctcg ttatgcaaac cgtctttttc
    12901 tgtttgcaca agcaaattgc cgccggcgat gatttggcta tcggtattaa atacttcttt
    12961 accatcaatg gttaaatcat tacctgaaat gattttggct ggcgcagttt gggtaacttg
    13021 ggttttttgg gtgacttttt cataatcgta tttatgccaa ttttcatgcg ccgctccatc
    13081 aggggtgcgt aagtggtctg attcatcgtt atagacagac cagcctaatt catgttgtgt
    13141 gccttcccgc aataattcgt gtcgtccaaa tgcttcgtaa tcaacaatat gctcgcgccc
    13201 tgtttctacc aactgcgttt tcaaatgctc attggtattg tgcagctttt ctacgcctaa
    13261 acgcattttg ccggcggctt caatggttgc gccggcattg tgtatccttt gggctttgcc
    13321 tgtggcttgg ccattggtat ctaatgcgcc gccaaccgcc atatcgttac cgctgtaaat
    13381 cagactgttt tcacggttgt ttaattgtcc gatgcctaaa ttcaggtttt cacgtgccgc
    13441 aatggcggca cctgtaccgt tttcatcttg attgtctaag cgggtagccg caatagcgat
    13501 attgtcgcca taaatccgac ctgtaccgat attattcatt tgcccggctt ggattttggt
    13561 ttgttgtccg tcaatcaagc ctctattggt taaattgtgc tgcgtgccaa tgtctgttgc
    13621 accgccggat tgaatgttgc cttgtgctgc attatcaagg ttatttgctt taatccgaat
    13681 gcgttttcct gcttgcaaag tatgtgaatt tttcaggctg cctcgtgtac tgagcgacaa
    13741 ttcattgccc gccacgatat tgcgttctac ataaaaatca tcttgtaacg caatatccag
    13801 tttattatca gcggcaagtg tgccgttgtt ggataacgat tttgcctgaa tagcaacatc
    13861 acggcctgat tgtatcgtgc cattcgtatt atcaatgaca gcggtagatt gctgaccatc
    13921 gtgaataatc agttgttgat tggtcgctat ttcgccattt tgattgttca ggctgcctga
    13981 aacggctaaa tccgctattt ctgctgataa taacttgcca tgagcgttat ccagttgatc
    14041 ggtttcaatc tctaactgtt ggcgtgttgt gatgttgcca ttttgattat tcaggctgcc
    14101 ggcttgaatg tggaccgcat cactgataat tgttccattg tgattgtcaa acgccgaacc
    14161 ttttgcattt aactgatgaa tgtctatttg tcctgcatta tttaaacctt gttgcgcact
    14221 aacatctgtt tgaccattgg caataatact gcctgaatta tccagtgcac catgagtgcg
    14281 aattgtccca tcagcaaagg taggcgcagt tatgtttgat atagaaacgg ttgcagtacc
    14341 cgtacctgtt gccgttgttg gtgtggtagt ggatgaatgg aaagatgcat tgtaactatt
    14401 gccggtttga ttgcttgaac catttgacgc ggttggtgcg gtatcttgta aacccatgcg
    14461 gccacggtta tccattttgc cttgtgcatc aatatggagt ttttgtgaac ctgtttgaga
    14521 gagtttgcct tgattattaa gtgtgtcggt atcaatagcc aaacgagcgg cttcaatggt
    14581 gcctgatgtt tcatttttca ggctgcccga attgtgaatc aatatttcgc ctgaggacaa
    14641 taatgtgcca gtgttttgaa tcgactgact gtgaatttga gtgccttgtt gcgataccgc
    14701 cgtaccgctg ttttcaacgc cctgactgcg gatattgact ttgtgttccg ctgtattatc
    14761 cgtatctttc gcattggcgg cagccatcgt gccactattg actaaacggc catttgcatc
    14821 aat
//
LOCUS       DAXHNP010000035        14775 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.035, whole genome shotgun sequence.
ACCESSION   DAXHNP010000035 DAXHNP010000000
VERSION     DAXHNP010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14775
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.035"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            43..675
                     /locus_tag="ACFM5C_000790"
     CDS             43..675
                     /locus_tag="ACFM5C_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFC6068535.1"
                     /translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
                     DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
                     QDIALRFSRFAERKAAFFSYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPVVLVG
                     KAFWSGLAEWINAQLLVRGLISEGAVSLFAISDDEDEIVAYLSENGLQTA"
     gene            747..2117
                     /gene="purB"
                     /locus_tag="ACFM5C_000791"
     CDS             747..2117
                     /gene="purB"
                     /locus_tag="ACFM5C_000791"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFC6068536.1"
                     /translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
                     ALAAEPKIVEVPPFSAGTLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKER
                     FSSVPEVAAASEFIHFACTSEDINNLSHALMLQEAREVILLPKLAEIIEKLTGMAHEL
                     AAVPMMSRTHGQPATPSTLGKEIANVVYRLQRQFKNLQAQEFLGKINGAVGNYNAHMV
                     AYPDVDWETHCRNFVEIGLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVW
                     GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQ
                     RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
                     MRRYGVANPYEKLKDLTRGKGGITPEVLKGFIGSLEIPVEAKAKLLELTPALYVGKAE
                     ALAKRI"
     gene            2197..4065
                     /locus_tag="ACFM5C_000792"
     CDS             2197..4065
                     /locus_tag="ACFM5C_000792"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6068537.1"
                     /translation="MQAVRYRPEIDGLRAVAVLSVMIFHLNNRWLPGGFLGVDIFFVI
                     SGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQM
                     RKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKK
                     TKSLRVLRNISIILFLILTASSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVY
                     GQTQNGRRQTANGKRQLLSSLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRS
                     MQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALT
                     AGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPG
                     APLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDEKLAD
                     NPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFQARFRETVKRIAA
                     VKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLIKDIPNV
                     HWVDAQKYLPKNTVEIYGRYLYGDQDHLTYFGSYYMGREFHKHERLLKSSRDGALQ"
     gene            complement(4160..4773)
                     /locus_tag="ACFM5C_000793"
                     /pseudo
     CDS             complement(4160..4773)
                     /locus_tag="ACFM5C_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272072.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
     gene            complement(4810..6960)
                     /gene="dinG"
                     /locus_tag="ACFM5C_000794"
     CDS             complement(4810..6960)
                     /gene="dinG"
                     /locus_tag="ACFM5C_000794"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HFC6068538.1"
                     /translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
                     LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
                     QLVDRDLPFLVEKSGLELSFALAKGRGRYLCPYKLYQLTQSNAQQNLLGFEAPAVLWD
                     SKPKPEELKLLRDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRP
                     ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
                     RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
                     EPSLSMGPSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVVGLNDALS
                     AARREKEQDGALLDRLTGEFGIFIVRIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
                     KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
                     LALKSPFDFEKQGELYIPPIYASPKDPEAHTAAVIEWLPKLISPTEAIGTLVLFSSRK
                     QMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPG
                     TACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRT
                     EQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG"
     gene            7117..7287
                     /locus_tag="ACFM5C_000795"
     CDS             7117..7287
                     /locus_tag="ACFM5C_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068539.1"
                     /translation="MLLYRLLGGAEIECGRCPVPPMTDWQHFLPAMGTVSAWVAVIWA
                     YLIIESEKNGRY"
     gene            complement(7355..8656)
                     /locus_tag="ACFM5C_000796"
     CDS             complement(7355..8656)
                     /locus_tag="ACFM5C_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding domain-containing protein"
                     /protein_id="HFC6068540.1"
                     /translation="MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCTAVAEGLPV
                     IGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAV
                     IADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYRE
                     VWLDRFSKQPPAGPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRF
                     LEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFF
                     LQLALQHTDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSA
                     DFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGT
                     FIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP"
     gene            complement(8646..9557)
                     /locus_tag="ACFM5C_000797"
     CDS             complement(8646..9557)
                     /locus_tag="ACFM5C_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6068541.1"
                     /translation="MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTV
                     QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
                     AGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
                     IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
                     IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRA
                     FLSAKVRSFIDFLNEKIASRKGCRNAV"
     gene            9665..10063
                     /locus_tag="ACFM5C_000798"
     CDS             9665..10063
                     /locus_tag="ACFM5C_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6068542.1"
                     /translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
                     GGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
                     AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
     gene            10112..10717
                     /locus_tag="ACFM5C_000799"
     CDS             10112..10717
                     /locus_tag="ACFM5C_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6068543.1"
                     /translation="MTRQSLQQAAESRRSIYSLNKNLPVGKDEVVQIVEHAVLHTPSS
                     FNSQSARVVVLFGEEHDKVWQFVEDALRAVVPADSFEPTAQKLNLFKAGAATILFYED
                     QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
                     KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
     gene            10903..13014
                     /locus_tag="ACFM5C_000800"
     CDS             10903..13014
                     /locus_tag="ACFM5C_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6068544.1"
                     /translation="MKISFHLALLPTLIIASFPVAAADTQDNGEHYTATLPTVSVVGQ
                     SDTSVLKGYINYDEAAVTRNGQLIKETPQTIDTLNIQKNKNYGTNDLSSILEGNAGID
                     AAYDMRGESIFLRGFQADASDIYRDGVRESGQVRRSTANIERVEILKGPSSVLYGRTN
                     GGGVINMVSKYANFKQSRNIGAVYGEWANRSLNMDINEVLNKNVAIRLTGEVGRANSF
                     RSGIDSKNVMVSPSITVKLDNGLKWTGQYTYDNVERTPDRSPTKSVYDRFGLPYRMGF
                     AHRNDFVKDKLQVWRSDLEYAFNDKWRAQWQLAHRTAAQDFDHFYAGSENGNLIKRNY
                     AWQQTDNKTLSSNFTLNGDYTIGRFENHLTVGMDYSREHRNPTLGYNRAFSASINPYD
                     RASWPASGRLQPILTQNRHKADSYGIFVQNIFSATPDLKFVLGGRYDKYTFNSENKLT
                     GSSRQYSGHSFSPNIGAVWNINPVHTLYASYNKGFAPYGGRGGYLSIDTLSSAVFNAD
                     PEYTRQYETGVKSSWLDDRLSTTLSAYQIERFNIRYRPDPKNNPYIYAVSGKHRSRGV
                     ELSAIGQIIPKKLYLRGSLGVMQAKVVEDKENPDRVGIHLNNTSNVTGNLFFRYTPTE
                     NLYGEIGVTGTGKRYGYDSRNKEVTTLPGFARVDAMLGWNHKNVNVTFAAANLFNQKY
                     WRSDSMPGNPRGYTARVNYRF"
     gene            13212..13715
                     /locus_tag="ACFM5C_000801"
     CDS             13212..13715
                     /locus_tag="ACFM5C_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFC6068545.1"
                     /translation="MKTAILIDGAFFIKRVRSLGLSQNPHDAKRIADLAFRYSMLHLK
                     DKINGTDQMDDLYRIFFYDCVPFEKKMHNPVSHRAIDFSKTPEAIFRCNLHTELKKKR
                     KLALRLGKLSDNTAWILKPQVMKNLLKNPSTQITENDVVLDVKQKGVDMRIGLDISSI
                     TLKKTSR"
     gene            14043..14738
                     /locus_tag="ACFM5C_000802"
     CDS             14043..14738
                     /locus_tag="ACFM5C_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6068546.1"
                     /translation="MKLKTLALTSLTLLALAACSKQAETSVPADSVQSSSSAPAAPAP
                     LTEGVNYTVLSTPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
                     HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
                     DGKKVLAAFEASESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
                     LVDKVREEQKKPQ"
BASE COUNT         3334 a         3801 c         4106 g         3534 t
ORIGIN      
        1 tttttgacgg tgtacaatcg ctgtttttga acggaggatg gaatggagaa tacaaaccgt
       61 gtgccggagc aggcacgtta tgatgccgaa cgcaggcagg cagacgaagc attggcgggc
      121 gtgtttccgg cagtcagtat cttcggcagc gcgcgcacgc cgcagaatca tgcggattat
      181 gcgttcgcct gccgtctggc gcggcggctg tcggattcgg gcattgccgt catttcgggc
      241 ggcgggccgg ggattatgga ggcggcaaac aagggcgcgt ttgcagggaa gtcggtttcg
      301 gtggggctga acatcgtttt gccgcacgag cagaaaccga atccgtatca ggacatcgcc
      361 ttgcggtttt cccgttttgc cgaacgcaag gcggcgtttt tcagctattc ccaagcatat
      421 gtcgtgatgc cgggcggctt cgggacgctg gacgaattgt ttgaaatcct aaccttggtg
      481 cagacgggca aagtaccgcc gcgtccggtc gttttggtcg ggaaggcatt ttggtcgggc
      541 ttggcggagt ggataaacgc gcagcttttg gtgcgcggtc tgatttccga aggggcggtc
      601 tctttgtttg ccatatcgga cgatgaagat gaaatcgttg cgtatctgtc ggaaaacggg
      661 cttcagacgg catagcgtcc tgagagtgat gtataattgc aaacaattta acaatttttg
      721 atgtctttcc cgaacaggat gccgaaatga tcaaccccat cgcctcgctt tcccctttag
      781 acggccgtta tgcccaatcc gttgaagcat tgcgcccgat tttttcagag tacggcctga
      841 tgaaggcgcg cgtcaaagtc gaattaaact ggctcaaagc cctggccgcc gagccgaaga
      901 ttgtcgaagt gccgcccttc agtgccggaa cgcttgccga aatcgacacg gtgattgaaa
      961 acttttcatt ggaagacgcg gccgccgtca aagccatcga agccacgacc aatcatgatg
     1021 tcaaagccat tgaatattgg cttaaagaac gcttctccag cgtgcctgaa gtggctgctg
     1081 ccagcgagtt catccacttt gcctgcacca gcgaagacat caacaacctg tcccacgcct
     1141 taatgctgca agaagcgcgt gaggttattt tgctgccgaa actggctgaa atcatcgaaa
     1201 aactgaccgg catggcgcat gagttggctg ccgtccctat gatgagccgt acgcatggcc
     1261 agcctgctac accaagcaca ctgggtaaag aaatcgccaa tgtcgtgtac cgcctgcaac
     1321 gtcagtttaa aaacctgcaa gcgcaagagt tcctcggcaa aatcaatggc gcagtcggca
     1381 actacaatgc ccatatggtc gcttatcccg atgtggattg ggaaacccat tgccgtaact
     1441 tcgtcgaaat cggcctcggt ctgaccttca acccctacac catccaaatc gagccgcacg
     1501 actacatggc ggaattcttc caaaccctca gccgcatcaa cacgattctc atcgacttta
     1561 accgcgacgt ttggggttat atttcattgg gttacttcaa acaaaaagtc aaagcgggcg
     1621 aagtcggctc ttccaccatg ccgcacaaag tcaaccccat cgattttgaa aactccgaag
     1681 gcaacctcgg tatggcaaac gccgtattgg gctttttgtc cgaaaaactg ccgatttccc
     1741 gctggcagcg cgacctgacc gacagcaccg tcttacgcaa tatgggcgtg ggcgtgggct
     1801 atgccgtgtt gggtttcgcc gcccacctgc gcggtctgaa caagctcgaa cccaaccctg
     1861 ccgcgcttgc cgccgatttg gatgccactt gggaactgct cgccgagccg attcaaaccg
     1921 tgatgcgccg ttacggtgtc gccaatcctt acgaaaaact gaaagacctg acgcgcggca
     1981 aaggcggcat tacgcccgaa gtgctgaaag gctttatcgg atcgctggaa atccccgtcg
     2041 aagccaaagc aaaattgctt gagctgaccc ccgcactgta tgtgggcaag gctgaagcgt
     2101 tggcgaaacg gatttgagcg tttactgaaa ccgatgccgt ctgaacgcgc gttcagacgg
     2161 catttttaag ataacgggac atacggggcg atatttatgc aagctgtccg atacaggcct
     2221 gaaattgacg gattgcgggc cgttgccgtg ctatccgtca tgattttcca cctgaataac
     2281 cgctggctgc ccggagggtt tttgggggtg gacattttct ttgtcatctc gggattcctc
     2341 attaccggca tcattctttc tgaaatacag aacggttctt tttctttccg ggatttttat
     2401 acccgcagga ttaagcggat ttaccctgcc tttattgcgg ccgtgtcgct ggcttcggtg
     2461 attgcctctc aaatcttcct ttacgaagat ttcaaccaaa tgcggaaaac cgtggagctt
     2521 tctgcggttt tcttgtccaa tatttatctg gggtttcagc aggggtattt cgatttgagt
     2581 gccgacgaga accccgtact gcatatctgg tctttggcgg tagaggaaca gtattacctc
     2641 ctgtatcctc ttttgctgat attttgctgc aaaaaaacca aatcgctacg ggtgctgcgt
     2701 aacatcagca tcatcctgtt tttgattttg actgcctcat cgtttttgcc aagcgggttt
     2761 tataccgaca tcctcaacca acccaatact tattaccttt cgacactgag gtttcccgag
     2821 ctgttggcag gttcgctgct ggcggtttac gggcaaacgc aaaacggcag acggcaaaca
     2881 gcaaatggaa aacggcagtt gctttcatca ctctgcttcg gcgcattgct tgcctgcctg
     2941 ttcgtgattg acaaacacaa tccgtttatc ccgggaatga ccctgctcct tccctgcctg
     3001 ctgacggcgc tgcttatccg gagtatgcaa tacgggacac ttccgacccg catcctgtcg
     3061 gcaagcccca tcgtatttgt cggcaaaatc tcttattccc tatacctgta ccattggatt
     3121 tttattgctt tcgcccatta cattacaggc gacaaacagc tcggactgcc tgccgtatcg
     3181 gcggttgccg cgttgacggc cggattttcc ctgttgagtt attatttgat tgaacagccg
     3241 cttagaaaac ggaagatgac cttcaaaaag gcatttttct gcctctatct cgccccgtcc
     3301 ctgatacttg tcggttacaa cctgtacgca agggggatat tgaaacagga acacctccgc
     3361 ccgttgcccg gcgcgcccct tgctgcggaa aatcattttc cggaaaccgt cctgaccctc
     3421 ggcgactcgc acgccggaca cctgcggggg tttctggatt atgtcggcag ccgggaaggg
     3481 tggaaagcca aaatcctgtc cctcgattcg gagtgtttgg tttgggtaga tgagaagctg
     3541 gcagacaacc cgttatgtcg aaaataccgg gatgaagttg aaaaagccga agccgttttc
     3601 attgcccaat tctatgattt gaggatgggc ggccagcccg tgccgagatt tgaagcgcaa
     3661 tccttcctaa tacccgggtt ccaagcccga ttcagggaaa ccgtcaaaag gatagccgcc
     3721 gtcaaacccg tctatgtttt tgcaaacaac acatcaatca gccgttcgcc cctgagggag
     3781 gaaaaattga aaagatttgc cgcaaaccaa tatctccgcc ccattcaggc tatgggcgac
     3841 atcggcaaga gcaatcaggc ggtctttgat ttgattaaag atattcccaa tgtgcattgg
     3901 gtggacgcac aaaaatacct gcccaaaaac acggtcgaaa tatacggccg ctatctttac
     3961 ggcgaccaag accacctgac ctatttcggt tcttattata tggggcggga atttcacaaa
     4021 cacgaacgcc tgcttaaatc ttctcgcgac ggcgcattgc agtagcctgc cttgccgtcc
     4081 gatatcgttt gtgccgccgt ttgcctttcg gggcggcggc ggtttttatt ttccttcccc
     4141 tgcgggaggg aattttgaat caaaacccca attgcctttc caagttttcc accagattgt
     4201 catccagttc caaagcctgc gacaggcggg cgaggaagac ggtttctttc cgcgacaaat
     4261 cggcacatac cagtcttgcc gccagatagg cctccgccgc caacgcctca tcgttgccga
     4321 cggcggcggc gatgtcttcg atgcttgcgg gcaggcggta ttcggcggcg agccatgcag
     4381 cagtttcggg gtctgtgccg ctttcctgtt cgatagtccg gcgttcggct tcgtctatca
     4441 tgccgtctga agcggcggtg gctatcatgg tgcgcaatac ggtgcggctg tatgtttctt
     4501 cggtttctcc ggcaggttgg aaatcgcttt gtgttacggt tgcccgccct ttgttttgct
     4561 gccacatctg atagccccgg taggcgaggt agcccaaagc ggcggtcgaa ccgattttgg
     4621 tgatggtttt gcggttttta ccgttcagca gcatggaggc gacaccggca accagcgcgc
     4681 ctccgccgaa tgaattgagc gggctgtcgg agaatgtgtt gccttttttt gaaccgtgct
     4741 taagacttgg ttgagcagtc gggtaaagtt catgaatttt tcctttctgt tgcgggaagg
     4801 gcggtatgtt taccctatcc ttttaaacgg cggcaggccg gccaataatt gttggccgta
     4861 ccgctgtgtt ttgatgcggt tgtcgaggat ggttacgcgg ccgtagtctt gttcggtgcg
     4921 gatgaggcgg ccgacggcct ggatgagttt gatgccggct tcggggacgg tgatttcaat
     4981 aaaaggattg ccgccgcgct gttctatcca gcggttttgg gttttttcga tggggttgtc
     5041 aggcatcgca aacggcagct tggcgatgat gacttgcacg caggcggtgc cgggcaggtc
     5101 gagtccttcg gcgaaactgt cgagtccgaa gatgatgctg gctttgcctt cttctatggc
     5161 ccggtggtgt ttttgcagga ggacggcttt gggtaattcg ccttgtacga gcaagagcgg
     5221 caggtagtct ccgggcaggc gcagggcgac atcctgcatt tgtttgcgcg aggaaaacaa
     5281 gacgagcgtg ccgatggctt cggtgggcga aataagcttg ggcagccatt cgatgacggc
     5341 ggcggtgtgg gcttcggggt ctttggggct ggcgtatatg ggggggatgt agagttcgcc
     5401 ctgtttttca aagtcaaagg ggcttttgag ggcgagggtg gtggtttcgg gcagccattg
     5461 cagcccggtt tggcgcagca tcaggttgaa gttgcccaag gattgcaggg tggcggaagt
     5521 caataccgcg cctgccgcac gccgccacag gctgttggca aggtgggatg cgctgctgat
     5581 ggggctggcg ttgaaaatgt agtcgttttt gtcgtcggca cggcgggtta tccattttgc
     5641 cagcggctct tcgccttcga gggggacggt ggagagcaaa tcccaaaccg cgctgatttg
     5701 ttcgatacgg acgatgaaga tgccgaactc gccggtcagg cggtcgagga gcgcgccgtc
     5761 ctgttctttt tcgcggcgcg cggcggaaag cgcatcgttc agcccgacaa cgtgtttgag
     5821 caggctgcgc gcagcaatgg ccgtattgga aacggtggtt tcgaggcctt cggggatttt
     5881 gccgtcttcc cacagccaag tcggttcgct gttggttcgt ctgtcgtttt cagacggccc
     5941 catacttaaa gacggctctt ccgccaaatg gaactgccat tcgtgcaggc tgtcgagcaa
     6001 ggatgcggcg gcttcgtcgg ccaggttggc aagttcggct ttatcggtaa gcgcggcaat
     6061 tttgccggtc agctgcggca gtttttccag cgtccaaacg gcaatattcc atgaatgttc
     6121 ggcggcaaaa cggctgaggg cttttttggg caggtggtgc gcttcgtcta tgcaatagaa
     6181 actgttttcg ggcgcaggca gaatcacgcc gccgcccata ctgatgtcgg caagcagaag
     6241 atcgtggttg gcaacgacga catcgacggt ttccaagaca tcgcgtgcta ggtaaaacgg
     6301 acattccgga cggttgggac aggcggtttt caggcagccg tggcggtcgt tggtcacttt
     6361 gagccaaatc gcgtcatcga ttttttccgg ccaagtgtcg cggtcgccgt tgaaccgtcg
     6421 ggcggaaaat tcgtcggcga tgtcgcgcag cagcttcaat tcttcgggct tgggtttgct
     6481 gtcccacaag acggcggggg cttcaaagcc gagcaggttt tgctgggcat tgctttgcgt
     6541 cagttgatag agtttgtagg ggcagagata gcggccgcgc cctttggcaa gcgcgaagct
     6601 cagttccaaa ccgctttttt cgaccaaaaa cggcaggtcg cggtctacca actgctcctg
     6661 caaggcaacc gttgcgctgc tcacaatcag ccgcttgccg cgcgtctgcg ccatgatgcc
     6721 gcccgccagc aggtaggcaa gcgatttgcc cacgccggtc ggcccttcga ttacggcgat
     6781 gctctcgccc tcgcgcttgg gcggctcgcc gccttcttcg cgcgccaacg tccgcgaaaa
     6841 agcgttggca accgccgcaa tcatttcccg ctgcgaagcg cgcggacgga aaccgggcag
     6901 gtttttgccg atgttttggt aatggtcgcg gatggcgttt ttttctaaat cggtgagcat
     6961 ggcgttttgt acggcggtag aagtgggctt attttaacat tgcacggaag cggtacaata
     7021 tcgttgtcgg aatggggggt gaggtgaatc gtgcggacgt ggttggtttt ttggttgcag
     7081 cgtttgaaat acccgttgtt gctttggatt gcggatatgt tgctgtaccg gttgttgggc
     7141 ggcgcggaaa tcgaatgcgg ccgttgccct gtgccgccga tgacggattg gcagcatttt
     7201 ttgccggcga tgggaacggt gtcggcttgg gtggcggtga tttgggcata tctgattatt
     7261 gaaagtgaaa aaaacggaag atattgagtc atccggacgc aatgccgtct gaaacggaag
     7321 ttcagacggc atttgtttta ggttgccgta ccgcttaggg aataccggcg acaggatagg
     7381 cgggatagcc gtgggtatcg accgaacagg caaaccgcca aggcgtgtgg acggtgtcgg
     7441 cggacaggtg ggcgagttcg ggaatgtgcc gtttgataaa agtaccgtcc gggtcggtac
     7501 ggtatgaggc ggcggcaatg tcggggcagg tgtgccgtga ggcggcaagc caccagttgc
     7561 cttggttgat tgccgcatcg aaatcggtca gctgtcgggc aaaccatatc tcgccttcgc
     7621 ggcgggggag gtttaaaacg tggcagaaaa aatccgcgct caagcgtctc agggcggggt
     7681 ggaggctgcc ggttttgtgc aaacagcgca tcgcggcatc gataatcgga atgccggtct
     7741 ggccctgctg ccaaagcgtc aggcgcaggg tgtgttcagg attgccgtct gaagggtcgt
     7801 catccgtgtg ctgcaaggca agttgaagga aaaaatcgcg gcggatgatg ttgtccgccc
     7861 acgcgttcag acggcgttcg aggctttccc gcgcgagcag gcgcggcgag atgcagccgg
     7921 cactcaaata cgcgcccatc agcgaagtgt gtttgcgcga ggggaaatcc tttaaaacgg
     7981 agtaggaatc cgcctgttcg agaaaccgcc gccactgccg ccaagccgcc gtttcgccgc
     8041 tgttttgcgg caggaagatg ccgtctgaaa gggcggcagg cggcggggcg gaaaggtttt
     8101 cggggaaggg ttggcggtat gccgcgaata ggtccggacc ggcggggggc tgcttggaaa
     8161 agcggtcgag ccatacttcg cggtagcggt cgaaatcggt gtgtgccgtg ccgccgtcgg
     8221 gtatcaggtc ggttttgccg aaaacggcgc ggtcattgac gaaggttaac gcgatgccgt
     8281 gtttgtccaa ttcatgccaa agggcgttgt cggcgagttt gtcggcaaaa gtatgggatt
     8341 cgtcggcgat gacggcgcgg atattgaggc ggacggcgag ccggacgagc tcggcaggcg
     8401 atgccgccgt gtagagcggg atgccgcgcc ctgcaagccc ttgggcgagt tcggcggcgg
     8461 attggcggta gaacgcggcg cggcgagggt tgtctgtttc ggcatcgtca atccaaatac
     8521 cgataacggg caaaccttcg gcaacggcgg tgcataaggc ggcgttgtcg cggatgcgga
     8581 ggttttggcg gaaccagacg agcgtgtgtg cggcgcacgt gtccgcataa agggggcggg
     8641 cggtttcaga cggcatttcg gcagcctttc ctgctggcga ttttttcgtt cagaaaatcg
     8701 atgaagctgc ggactttcgc gcttaagaat gccctgtctg cataaacggc attcagccgg
     8761 tcggtcggga cggcgtatcc gggcagcagc ctcaccagcg tgccgcagcg caaatcgtgt
     8821 tccgccgccc aaagcggctg ataaccgatg cacgcgcccg ccttaatcat ttcgcgcatc
     8881 atcagcgtgt tgtcggtacg gatgacgggg gtcagttcaa gccggtattt tttgccgtcc
     8941 gatttgcggg tgaggtcgag tttctgctgg ttggtgtagg tcggcaggac ggcgggcagc
     9001 cccgccactt cttccggcgt ttccggcacg ccgttgcgcc tcaggaagtc gggcgaggca
     9061 agcagggcaa attcgatttc cgccagtggg cgcgcaatca gtgacgggga cagggtttgg
     9121 gaaacgcgca acgccaaatc cacgccttcg gcaatcaaat cgacgtggcg gttgtccaaa
     9181 atcagttcta atgtcacttc gggataacgt tcgcggtatt ccgccagcca gttgcatatc
     9241 tggctgccgg caaaccacag tggcatcgtt acgcgcagca gcccctgcgg tttttccgtc
     9301 cccccggcgg ctttttgcgc ggcatcgtcg agcgtgtcga gcgcgtaact gcattgccgg
     9361 tagtattctt ccccggcttc ggtcaggctg aggttgcggc tgttgcggtg caggagtttg
     9421 gcttggacgg tgttttccaa gtggctgacg tgtttgcttg ccattgcggt ggagatgccg
     9481 agcgcgtcgg cggcgcgggt gaagccgccg ctttggacga cttggcggaa aaccttgagg
     9541 ctgaacaggg tgtccatatt ttcttgtgtg gaaaagttgt atcaataaaa gcagtatata
     9601 tttgaaaagg ggaaacatct atactctacc gcctgaaatg aagacaaata tcaaaggagc
     9661 ttttatgtcc gattgctgca accgtatcca accggttttg ctttctgttt tgcgtatcgt
     9721 aaccgcctac ctgtttttgt tgcacggtac gtcgaaaatc ttcgccttcc ccattgaaat
     9781 gggcagcggt tcgcccggcg ggctgttgct gcttgccggt attttagaaa ttgtcggcgg
     9841 cattttgctg gtgttgggcc tgtttgcgcg ccctgccgcg tttgttttgt ccggccagat
     9901 ggcggttgcc tattttatgg cgcacgcttc cggaaatgct ttgttcccga ttgccaacgg
     9961 cggcgagtcc gcagtgctgt tctgcttcgt attcctctat atcgcggcgg cgggcggcgg
    10021 agcatggtcg ctggacaggc tgtttttcaa gcgtaaagcc tgaatcggac tgcctaaagt
    10081 gtattttgtt gaatgttttt gaggaaaaga aatgacccgt caatctctgc aacaggctgc
    10141 cgaaagccgc cgttccattt attcgttaaa taaaaatctg cccgtcggca aagatgaagt
    10201 tgtccaaatc gtcgaacacg ccgttttgca cacaccttct tcgttcaatt cccaatctgc
    10261 ccgcgtggtc gtgctgtttg gcgaagagca tgataaggtg tggcaatttg tcgaagacgc
    10321 gctgcgtgcc gtcgtgcctg ccgacagttt tgaaccgacc gcgcaaaaat tgaacctgtt
    10381 taaggcgggt gcggcaacta ttttgtttta tgaagatcaa aatgttgtca aaggtttgca
    10441 ggagcagttc cctgcttatg ccgccaactt tcccgtttgg gcggaccagg cgaacgctat
    10501 ggtgcagtat gccgtttgga cgacacttgc cgcggtcggc gtaggtgcaa acctgcaaca
    10561 ttacaatccc ttgcccgatg cggcgattgc caaagcgtgg aatatccccg aaaactggtt
    10621 gttgcgcgca caaatggtta tcggcggtat tgaaggggcg gcaggtgaaa agacctttga
    10681 acccgttgca gaacgtttga aagtgttcgg cgcataattt cgcggtcaaa aaaatgccgt
    10741 ctgaaccctg ttcagacggc atttttcagt atcaggcggc gagttttccg cattctgaga
    10801 cctttgttta caaatatcat gttcaatata gttaaaagaa attattctca tttcctccgt
    10861 gaggcaatat aattcggttg ttttgttaaa ttgagtataa aaatgaaaat atcatttcat
    10921 ttagctttat tacccacgct gattattgct tccttccctg ttgctgccgc cgatacgcag
    10981 gacaatggtg aacattacac cgccactctg cccaccgttt ccgtggtcgg acagtccgac
    11041 accagcgtac tcaaaggcta catcaactac gacgaagccg ccgttacccg caacggacag
    11101 ctcatcaaag aaacgccgca aaccatcgat acgctcaata tccagaaaaa caaaaattac
    11161 ggtacgaacg atttgagttc catcctcgaa ggcaatgccg gcatcgacgc tgcctacgat
    11221 atgcgcggcg aaagcatttt cctgcgcggt tttcaagccg acgcatccga tatttaccgc
    11281 gacggcgtgc gcgaaagcgg acaagtgcgc cgcagtactg ccaacatcga gcgcgtggaa
    11341 atcctgaaag gcccgtcttc cgtgctttac ggccgcacca acggcggcgg cgtcatcaac
    11401 atggtcagca aatacgccaa cttcaaacaa agccgcaaca tcggtgcggt ttacggtgag
    11461 tgggcaaacc gcagcctgaa tatggacatt aacgaagtgc tgaacaaaaa cgtcgccatc
    11521 cgtctcaccg gcgaagtcgg gcgcgccaat tcgttccgca gcggcataga cagcaaaaat
    11581 gtcatggttt cgcccagcat taccgtcaaa ctcgacaacg gcttgaagtg gacggggcaa
    11641 tacacctacg acaatgtgga gcgcacgccc gaccgcagtc cgaccaagtc cgtgtacgac
    11701 cgcttcggac tgccttaccg catggggttc gcccaccgga acgattttgt caaagacaag
    11761 ctgcaagttt ggcgttccga ccttgaatac gccttcaacg acaaatggcg tgcccaatgg
    11821 cagctcgccc accgcacggc ggcgcaggat tttgatcatt tctatgcagg cagcgaaaat
    11881 ggcaacttaa tcaaacgtaa ctacgcctgg cagcagactg acaacaaaac cctgtcgtcc
    11941 aatttcacgc taaacggcga ctacaccatc ggccgttttg aaaaccactt gaccgtaggc
    12001 atggattaca gccgcgaaca ccgcaacccg accttaggtt acaaccgcgc cttttccgcc
    12061 tccatcaacc cctacgaccg cgcaagctgg ccggcttcgg gcagattgca gcctattctg
    12121 acccaaaacc gccacaaagc cgactcctac ggcatctttg tgcaaaacat cttctccgcc
    12181 acgcccgatt tgaaattcgt cctcggcggc cgttacgaca aatacacctt taattccgaa
    12241 aacaaactca ccggcagcag ccgccaatac agcggacact cgttcagccc caacatcggc
    12301 gcagtgtgga acatcaatcc cgtccacaca ctttacgcct cgtataacaa aggcttcgcg
    12361 ccttatggcg gacgcggcgg ctatttgagc atcgatacgt tgtcttccgc cgtgttcaac
    12421 gccgaccccg agtacacccg ccaatacgaa accggcgtga aaagcagttg gctggacgac
    12481 cgcctcagca ctacgttgtc tgcctaccaa atcgaacgct tcaatatccg ctaccgcccc
    12541 gatccaaaaa acaaccctta tatttatgcg gttagcggca aacaccgttc gcgcggcgtg
    12601 gaattgtccg ccatcgggca aatcatccct aaaaaactct atctgcgcgg ttcgttgggc
    12661 gtgatgcagg cgaaagtcgt tgaagacaaa gaaaatcccg accgagtggg catccatttg
    12721 aataacacca gcaacgttac cggcaacctg tttttccgtt ataccccgac cgaaaacctc
    12781 tacggcgaaa tcggcgtaac cggtacaggc aaacgctacg gttacgactc aagaaataaa
    12841 gaagtgacta cgcttccagg ctttgcccga gttgatgcca tgcttggctg gaaccataaa
    12901 aatgttaacg ttacctttgc cgcagccaat ctgttcaatc aaaaatattg gcgttcggac
    12961 tctatgccgg gtaatccgcg cggctatact gcccgggtaa attaccgttt ctgatgaaat
    13021 caggcaaagg ccgtctgaaa atcctgataa tccgtaaatt cagcatacga actttttgac
    13081 aggctttatc tacatcagta taatccaaaa agaaatagtg cccttggcag tacgcattac
    13141 ccattaaatc atagcgggta tgccgatccc aagggctttt ttatatcttt gacaaatata
    13201 ggggaagcaa tatgaaaacc gccattttga ttgacggtgc attttttatt aagcgggtac
    13261 ggtcattagg cctgtctcaa aatccacacg atgcaaaaag aattgctgat ttggctttcc
    13321 gatattcgat gctgcatctg aaagataaaa tcaacggcac agatcaaatg gatgatttat
    13381 atagaatttt cttttacgac tgcgtgccgt ttgaaaagaa aatgcacaat cccgtatctc
    13441 atcgtgccat agatttttca aagactccgg aagccatatt tcgttgcaat ctgcataccg
    13501 aattgaagaa gaagcgtaaa ttagcgttac gtttaggcaa gctgtcggac aatacagcat
    13561 ggatattaaa accccaagtc atgaaaaatc ttctgaaaaa cccgtcaact caaattacgg
    13621 aaaacgatgt cgtgctcgat gttaaacaaa aaggtgtaga tatgcgtata ggcttggata
    13681 tttcatctat taccttaaaa aaaacaagcc gataaaatca tcttgttttc tggtgattcc
    13741 gattttgtcc cagcagccaa attagccaga cgggaaggta tcgattttat tcttgatcct
    13801 atgtggaatc atgtcccacc tgacttaatg gaacacatcg acggattgaa gacaaaatgt
    13861 ccgaaaccgt aaattactag aacaaaggcc gtctgaaaat aaggctaatt atctaagcca
    13921 tatttcagac ggcctttata aaggctgaaa taaaactaaa cacatttttt cactcaaatc
    13981 gaacacgcct tcaataaaat gtcataaaat ccgcacatta atctgacaca caagagatac
    14041 ctatgaaact gaaaacctta gctttgactt cattgaccct gttggcattg gccgcttgta
    14101 gcaaacaggc tgaaaccagc gttccggcag acagcgtcca aagcagctca tctgctccgg
    14161 cagccccagc cccattgacc gaaggcgtga actacactgt attgtccacg cctatcccgc
    14221 aacagcaggc cggcaaagtc gaagtcttgg aatttttcgg ctacttctgc ccgcattgcg
    14281 cccatcttga gccggtcttg agcgagcaca tcaaaacgtt taaagacgat acctatatgc
    14341 gccgggagca tgtcgtgtgg ggtgatgaaa tgaaaccttt ggcacgtttg gcggccgcag
    14401 tggaaatggc cggtgaatca gataaagcca acagccatat tttcgatgcg atggttaatc
    14461 aaaaaatcaa tctggccgat accgataccc tgaaaaaatg gctgtccgag caaacagcgt
    14521 ttgacggcaa aaaagtattg gctgcatttg aggcttctga aagccaagcg cgtgcggctc
    14581 aaatggaaga gttgaccaat aaattccaaa tcagcggcac accgactgtg atcgtcggcg
    14641 gcaaatacca agttgaattt aaagactggc agtccggtat gaccacgatt gaccagttgg
    14701 tggataaagt acgcgaagag cagaaaaagc cgcaataagt tgaggattga atgagtaaag
    14761 gccgtttgaa aatag
//
LOCUS       DAXHNP010000036        14448 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.036, whole genome shotgun sequence.
ACCESSION   DAXHNP010000036 DAXHNP010000000
VERSION     DAXHNP010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14448
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.036"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(53..361)
                     /locus_tag="ACFM5C_000803"
     CDS             complement(53..361)
                     /locus_tag="ACFM5C_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068547.1"
                     /translation="MTNNVDLKVPAKRYFTLDELCGLLQISPYGFAQWQHDHGVVVGY
                     GGERYTRLDVVKLLKLQSTFAPYAEGAESGSDGNRPVTLQEIGDGLKELLADLDKELC
                     "
     gene            complement(345..647)
                     /locus_tag="ACFM5C_000804"
     CDS             complement(345..647)
                     /locus_tag="ACFM5C_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HFC6068548.1"
                     /translation="MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEE
                     IKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR"
     gene            complement(721..3084)
                     /gene="pheT"
                     /locus_tag="ACFM5C_000805"
     CDS             complement(721..3084)
                     /gene="pheT"
                     /locus_tag="ACFM5C_000805"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFC6068549.1"
                     /translation="MQFSYSWLKTQADTELSSDKLEHLLTMSGLEVEEAETAAPAFAG
                     VVIAEVKSVEKHPDADRLNVTRVDAGTGGLVQIVCGAPNVKAGIKVPCSLPGAVLPGN
                     FKIKPTKMRGVPSNGMLCSTNELGLPDDGVDGLHILPEDAPVGTNIREYLDLDDTLFT
                     LKITPNRADCLSIKGIAREVSALTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFI
                     SRVIENVNAKAATPDWMKQRLERSGIRSISALVDIGNYVMLEIGQPMHVFDADKLSGS
                     LHIRRAREGETLECLNEKTVSLSENTLVVADEKGVLSLAGLMGGAASAVSDGTQNIVL
                     EAAWFAPEIIAGKSRQYGFGSDSSFRFERGVDYRLQADAMERATELVLQICGGAAGEM
                     VEAQGKLPEAKQVGLRLDRLKTVLGVDIPAEQVETILQHLGLQPEKTAEGFRVTAPSF
                     RFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMLELPETRRPRFAVYNEMAAHGYRE
                     VVSYAFVDEQWEQDFAANADPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRV
                     RVFEIARVFGKGSDGRFVQNERIGGLWYGAAMPEQWGGKTRNADFYDIKADVENLLKN
                     KAVEFVKTGHPALHPGRAANIVSDGKVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAV
                     LECGKTRYRAVSKFQPVRRDLAFVMPEAMSHDDLLLVLKGAANKLVQEISVFDVYRGT
                     GLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGAATAAGARLRS"
     gene            complement(3109..3759)
                     /locus_tag="ACFM5C_000806"
     CDS             complement(3109..3759)
                     /locus_tag="ACFM5C_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HFC6068550.1"
                     /translation="MITISNEDNMILMSRYPDKYFDLAIVDPPYGILNKTKRGGDYKF
                     NMNEYSQWDIKPDQTYFNELFRVSKNQIIWGGNYFGELWLRSEYNKGFIIWDKNQPET
                     LNNFSMAEMAWSSFDRPSKIFRFSVRKNRNKTHPTQKPVELYQWLLKMYAKQGDKILD
                     THLGSGTLAIACCIAQFDLTACEINSDYYQQSIEKIKNNLPEARISFGHPGYCIIE"
     gene            complement(3756..5225)
                     /locus_tag="ACFM5C_000807"
     CDS             complement(3756..5225)
                     /locus_tag="ACFM5C_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6068551.1"
                     /translation="MTTARWVIDKHLQNFHILCKFAGILKTNSFISVEDKAKLSEKLE
                     KLDLYHRRNTGKSLDATTHKIKELSFYMFGYRDVCGQVTQKFLFSPLGNLFLKHLDNN
                     EYIQKIFLTMLWAIPFPHPYIKTDESIQLYPMRLIFKLLSDERLDCKLFSYEYIYLIS
                     FVKSADQNSYEKLVQDILVLRTCAEVKIKHQLTAENSRSHAYVNAAHEWESYFSKTLT
                     DAGVLQKTDGKIICRLKHGKTETYRKVTSSEFSIPKQLQEFVKKLQSAYSFSEMPLNL
                     NDSDRLKIDVIKEIYSFYPKELLEEIGELKDEAAYELLHLPRLIEQYADNNNGTEAYL
                     FEDVLEMGFNMFYNVEAKKIGGPGNTDLECLYITQKRKFAVEAKSTKNKLSGINSGRL
                     EDHKNKIKAIYTIVVTPRYVPAVLSDIRNCPIVIIRANTFAEFLYNCLINRSSIPEID
                     YRYFDEIIIKNLGKDISSEISNLTMQQFASNTTMEAYST"
     gene            complement(5228..6286)
                     /locus_tag="ACFM5C_000808"
     CDS             complement(5228..6286)
                     /locus_tag="ACFM5C_000808"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6068552.1"
                     /translation="MMIGASLFSSAGIAETYLHNAGIKIIAANELVPERANLYKALYP
                     ESKMIIGDILHEEVFQNLIQSVPNRLDFLIASPPCQGMSVAGKNRNIQEMANDKRNHL
                     IFRVIEFILLKRPTFVLIENVPFFLKIKLPYKGTLQTVEVILQDLFGCEYYIQTHIFD
                     SADYGVAQHRKRAIIRMNKHSTIWGMPEKVTKTISVRDAISFLPSIESGQKSNVKWHF
                     ARTHAPEHIIWLKNTPTGRSAFDNIEHYPKKKNGEKIKSYNTTYRRMEWDAPAPTITI
                     RNDAISSQLNVHPGRSMPDGTYSDARVLTPLELMLLTSLPIDWNIPDDTSELLIRQCI
                     GESIPPLLIKKIVERIGK"
     gene            complement(6469..7461)
                     /gene="pheS"
                     /locus_tag="ACFM5C_000809"
     CDS             complement(6469..7461)
                     /gene="pheS"
                     /locus_tag="ACFM5C_000809"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFC6068553.1"
                     /translation="MENVNRIVAEGIAAVEAAQDFNALEQIKARYLGKTGELTGLLKT
                     LGQMSPEERKTIGAHINECKNRFQTAFNAKRDALNEVKLQARLAAEALDITLPGRAQE
                     GGSLHPVTLTLQRVVELFHGMGFEVADGPEIEDDFHNFQALNIPANHPARAMQDTFYV
                     ENGDVLRTHTSPIQIRYMLDKKEPPIRIIAPGRVYRVDSDATHSPMFHQAEGLWVEEG
                     VTFADLKAVFTDFIRRFFERDDLQVRFRPSFFPFTEPSAEIDIMGENGKWLEVGGCGM
                     VHPNVLKNVNIDSEKYTGFAFGIGLDRFAMLRYNVNDLRLFFDNDLNFLKQFVK"
     gene            complement(7807..8166)
                     /gene="rplT"
                     /locus_tag="ACFM5C_000810"
     CDS             complement(7807..8166)
                     /gene="rplT"
                     /locus_tag="ACFM5C_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000124858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFC6068554.1"
                     /translation="MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQ
                     YAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFD
                     KAAFAQLVEKAKAALAA"
     gene            complement(8179..8376)
                     /gene="rpmI"
                     /locus_tag="ACFM5C_000811"
     CDS             complement(8179..8376)
                     /gene="rpmI"
                     /locus_tag="ACFM5C_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFC6068555.1"
                     /translation="MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQL
                     RGTSMVNDRDLASVAKMLPYA"
     gene            complement(8523..9044)
                     /gene="infC"
                     /locus_tag="ACFM5C_000812"
     CDS             complement(8523..9044)
                     /gene="infC"
                     /locus_tag="ACFM5C_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFC6068556.1"
                     /translation="MIAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQ
                     DVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQVQIKEIKFRPGTDEGDY
                     QIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKME
                     GRQMVMMIAPKKK"
     gene            complement(9062..10975)
                     /gene="thrS"
                     /locus_tag="ACFM5C_000813"
     CDS             complement(9062..10975)
                     /gene="thrS"
                     /locus_tag="ACFM5C_000813"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFC6068557.1"
                     /translation="MLNITLPDGSVRQYESPVTVAQIAASIGVGLARAAVAGRVNGKL
                     VDACDPIVENSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQERGEEYKLRLI
                     DDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIY
                     GTAWATKDELKAYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQVI
                     EQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKDNMFVTSSEKREYAVKPMNCP
                     GHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQI
                     VSEARAFNELLVRIYKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVE
                     WGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVM
                     LHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNITENQADYCREVAAKLQAAGF
                     RAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRKAEDLGSLDLDDFIA
                     QLQQEITDALVNH"
     gene            complement(11029..11105)
                     /locus_tag="ACFM5C_000814"
     tRNA            complement(11029..11105)
                     /locus_tag="ACFM5C_000814"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11069..11071),aa:Val,seq:gac)
     gene            11284..12399
                     /gene="tgt"
                     /locus_tag="ACFM5C_000815"
     CDS             11284..12399
                     /gene="tgt"
                     /locus_tag="ACFM5C_000815"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFC6068558.1"
                     /translation="MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNP
                     QNLHDIKAQIILGNTYHLWLRPGLEVVEQFGGLHGFIGWDKPILTDSGGFQVFSLSDM
                     RKLTEEGCTFKSPINGDKLFLSPEISMKIQTVLNSDIAMQLDECTPGEATREQAKKSL
                     QMSLRWAERSKKAFEDLKNPNALFGIVQGAMYEDLREESLRGLEQFDFPGLAVGGLSV
                     GEPKPEMYRMLRAVGPILPEHKPHYLMGVGTPEDLVYGVAHGIDMFDCVMPTRNARNG
                     WLFTRFGDLKIKNAKHKLDKRPIDESCTCYACQNFSRAYLHHLHRAGEILGAQLNTIH
                     NLHFYQVIMAEMRDAIEQGKFADWQARFHENRARGTD"
     gene            12409..13491
                     /gene="hemH"
                     /locus_tag="ACFM5C_000816"
     CDS             12409..13491
                     /gene="hemH"
                     /locus_tag="ACFM5C_000816"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFC6068559.1"
                     /translation="MPSEAASDGILPLYPTRTIFQKPIMLPFFPEPSLSYTQQNRTAV
                     LLLNLGTPDAPTAQAVRPYLKSFLTDRRVVELPKWLWYPILHGLVLTLRPKKSAHAYE
                     KIWFKEGSPLEVYTARQAAALAERMPDLIVRHAMTYGNPSVADVLSELKAQGAGRLLV
                     IPMYPQYAASSSGAAVDKVCEQLLLQRNQMSVRTVSRFYDDTGYIDAMKNHILRYWAE
                     HGRGKKLMLSFHGVPQKHYDLGDPYPDECRHTAKLLAEALELTEDQYVVSFQSQFGRA
                     KWVTPSTQDLFGKLPKQGVTELDVFCPGFLADCLETMEEIALMGREQFYEAGGKSYRY
                     IPCLNDNPDWIDALVALAEENLGGWR"
     gene            13683..14084
                     /locus_tag="ACFM5C_000817"
     CDS             13683..14084
                     /locus_tag="ACFM5C_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6068560.1"
                     /translation="MNTTRLPTALVLGCLCAAASAADNSIMTKGQKVYESNCVACHGK
                     KGEGRGTMFPPLYRSDFIMKKPQVLLHSMVKGINGTIKVNGKTYNGFMPATAISDADI
                     AAVATYIMNAFDNGGGSVTEKDVKQAKGKKN"
     gene            complement(14147..14437)
                     /locus_tag="ACFM5C_000818"
     CDS             complement(14147..14437)
                     /locus_tag="ACFM5C_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068561.1"
                     /translation="MAKYFTETGIGVREHFDFFGEFVVSPAARSGDLALAYGLRLEAG
                     EEGLSLAELFDKRSDSQEPVECGRIDIGGFMLTAKEVDGGGNIGSMGLKVPR"
BASE COUNT         3810 a         3660 c         3091 g         3887 t
ORIGIN      
        1 attttttagc gtgtaaaaca aaaccggctg catacctgca accggcctca aatcagcaca
       61 attccttatc caaatccgcc aacagctctt tcagaccgtc tccgatttcc tgaagcgtaa
      121 ccggacggtt gccgtccgaa cccgattccg caccttctgc atacggtgca aacgtgctct
      181 gcaatttcaa cagtttcacc acatccaaac gggtgtagcg ttcgccgccg taaccgacaa
      241 ccacaccgtg atcatgctgc cattgcgcaa aaccataggg gctgatttgc aacagtccgc
      301 acaactcgtc cagcgtgaaa tagcgttttg cgggaacctt caaatcaacg ttgtttgtca
      361 tagtagtgtt ccaccatgct tttgagtttc tggctggcat ggaaagttac cacgcggcgg
      421 gcggtaatcg gcacttcctc gccggtttta gggttacgac ccgggcgttg cggcttgtcg
      481 cgcaactgga aatttccgaa accggaaatt ttgatttctt cgccgcttgc caaagtgctg
      541 cggatttctt caaaaaagag ttcgacgatt tctttggcat cgtttttggt gacgttgctg
      601 actttgtcta ccaaaatatc ggccagttct gctttagtga gagtcatatg attaccttct
      661 gttgtaacag ttgtggatta ttaccaattt ttatttaaaa ttcaagcgaa tatttatttt
      721 ttaactgcga agccgcgccc ctgccgccgt tgccgcgcca atcagttttc cgataagcgg
      781 ctcgaccgcc tcatccgtca gcgtgttttc catatcctgc aaaatcactt tgaccgccac
      841 gctcttcatc ccttcgggca gtcccgtgcc gcgatacacg tcaaacacgc tgatttcctg
      901 taccaacttg tttgccgcgc ctttcaagac aagcagcaaa tcatcatggc tcatagcttc
      961 cggcatcaca aacgccaaat cgcggcgcac cggctggaat ttcgatacgg cccgatagcg
     1021 cgttttcccg cattccaaca cggccgccat atcgatttca aataccagcg gcgcttgcgg
     1081 caggtcgtat ttttgcagcc atttcggatg cagttcgccg acaaagccga tgactttgcc
     1141 gtctgaaacg atattggcgg cacgtccggg atgcagggcg ggatgtccgg ttttaacgaa
     1201 ctcgactgct ttgtttttca acagattttc cacatctgcc ttaatgtcgt aaaaatccgc
     1261 attgcgcgtt ttcccacccc attgttcggg cattgccgcg ccgtaccaca gaccgccgat
     1321 gcgttcgttt tggacaaacc ggccgtctga acctttgccg aacacgcggg cgatttcaaa
     1381 cacgcgcacg cggttttgtt tgcggttcag gttgttttgc aaaatttcca ccaagccgcc
     1441 gatgagtgtg gaacgcatca cggcatattg cgccgccagc gggttttgca ggcggatggg
     1501 gtcggcgttg gcggcaaaat cttgttccca ctgctcgtca acgaaggcat agctgaccac
     1561 ttcgcggtag ccgtgcgccg ccatttcgtt gtaaacggca aaacgcgggc ggcgtgtttc
     1621 gggcagttcc agcattttca gacggcctga cgtgtaatcg tcggggatgt tttcatagcc
     1681 gtaaacgcgt ccgatttctt caatcaaatc ggcctcaatt tcgatgtcaa aacggaagct
     1741 cggcgcggta acgcggaagc cttccgccgt tttctcgggc tgcaggccca agtgttgcaa
     1801 aatggtttcc acctgttcgg caggaatgtc cacgcccaac acggttttca gacggtccaa
     1861 acgcagtccg acctgcttgg cttcgggcaa tttaccttgt gcttcaacca tctcgcctgc
     1921 cgcaccgccg caaatctgca acaccaattc ggtagcacgt tccatggcat ccgcctgcaa
     1981 acggtaatcc acgccgcgct cgaagcggaa cgacgaatcc gaaccgaaac cgtattggcg
     2041 cgatttgccg gcgatgattt cgggcgcaaa ccaagccgct tccagcacga tattttgcgt
     2101 gccgtctgaa accgcgctcg ccgcgccgcc cattaagccc gccaaactca acacgccttt
     2161 ttcgtccgcc acgaccagcg tgttttcaga cagggaaacg gttttctcgt tcaggcattc
     2221 cagcgtttcc ccttcgcgcg cgcggcggat gtgcaggctg ccggaaagtt tgtcggcatc
     2281 aaaaacgtgc atcggctgac cgatttccag catcacataa ttgccgatgt ccaccagcgc
     2341 ggaaatactg cggatgccgc tgcgctccaa acgttgtttc atccaatcgg gagtagccgc
     2401 tttcgcattg acattttcaa taacgcggct gataaaacgg ccgcaatcgg caggcgcgtt
     2461 aatctgcacg ggctgttttc gactgcccgt gatcggcgcg gtatggattt cgggctgcct
     2521 gaacgcgcac cccgtcaatg cggacacttc gcgcgcaatg cctttgatgc tcaagcagtc
     2581 ggcgcggtta ggcgtaattt tcaacgtaaa cagcgtatcg tccaaatcca agtattcgcg
     2641 gatattggta ccgacgggcg catcttcagg cagaatgtgc aggccgtcta caccatcatc
     2701 aggcaaacct agttcattgg tcgaacacag cataccgttt gatggcacac cgcgcatttt
     2761 ggtcggcttg attttgaaat tacccggcaa aacggcaccc ggcagcgaac acggcacttt
     2821 gatgcccgct ttcacattcg gcgcaccgca cacaatctgc accaacccgc ccgtacccgc
     2881 atcaactcgg gtaacgttca aacggtctgc atccggatgt ttttcaacgg atttcacttc
     2941 ggcaatcacc acgcccgcaa acgcaggcgc ggcagtttca gcctcttcca cttccaagcc
     3001 ggacatcgtt aacagatgtt ccagcttatc ggaggaaagt tcggtatcgg cttgggtttt
     3061 cagccatgag taggagaatt gcatggttaa tttctctata tttttaagtt attcaataat
     3121 acaataacct ggatgcccaa aactgattct agcttcaggt aaattatttt ttattttctc
     3181 aatcgattgt tggtaataat cggaattgat ttcacaagct gtcaaatcaa actgtgcaat
     3241 gcagcatgca atagcaagag ttccacttcc taaatgtgta tctaaaatct tatcaccctg
     3301 ctttgcatac atttttaaca accactgata taattcgact ggtttttgtg ttgggtgagt
     3361 tttattacga tttttccgca cactaaaccg gaaaatttta gatggcctat cgaatgacga
     3421 ccaagccatt tccgccatag aaaaattatt taatgtctct ggttgattct tatcccaaat
     3481 aataaatcct ttattatatt cacttctcaa ccataactcg ccaaaataat tcccacccca
     3541 aataatttga ttttttgaca cgcgaaataa ttcattaaag taagtttggt ctggcttaat
     3601 atcccattgt gagtattcat tcatattgaa tttataatca ccaccacgtt tagttttatt
     3661 caaaatccca taaggaggat ctacaattgc caaatcaaaa tacttgtcag gataccgaga
     3721 cattaagatc atgttatctt catttgaaat agttatcatg tactatacgc ttccattgtg
     3781 gtgttacttg caaactgttg catagtcaaa ttggaaattt ctgaactaat atcttttcca
     3841 agatttttaa taataatttc atcaaaatac cgataatcaa tctctggaat actggagcga
     3901 ttaatcaaac aattatataa aaattcagca aatgtattgg cacgaataat tacaattggg
     3961 caattacgaa tatcggataa tacggcaggg acataacgtg gtgtgacaac aattgtgtaa
     4021 atggccttaa ttttattttt atgatcttcc aatcttcctg aattaatacc tgataactta
     4081 tttttagttg attttgcctc cactgcaaat tttctctttt gcgtaatata taagcactct
     4141 aaatccgtat tacctggtcc accaattttt ttagcttcta cgttataaaa catattgaac
     4201 cccatttcta gaacatcttc aaatagatat gcctctgttc cattattatt atctgcatat
     4261 tgttcaatca acctaggtaa gtgcaataat tcatatgctg cttcatcctt aagctcacca
     4321 atttcctcca ataactcttt tggatagaag ctataaattt ccttaatgac atcaattttc
     4381 aaacgatcac tatcgttcag atttaatggc atttctgaaa acgaataagc actttgcaat
     4441 tttttcacaa attcctgaag ttgcttagga atcgaaaact cacttgatgt tactttacga
     4501 tatgtttcgg tcttaccatg ctttagacgg caaataattt taccatctgt tttttgcaaa
     4561 acacctgcat cagtcaatgt ttttgaaaaa taagattccc actcatgtgc tgcatttaca
     4621 taagcatgac tacgactatt ttccgcagtt aattgatgtt taatttttac ttcagcacat
     4681 gttcgtaaca ccaaaatgtc ttgtactaat ttttcatagc tattctgatc agcagatttc
     4741 acaaatgaaa ttaaatagat atattcataa gaaaatagtt tacaatccaa tctttcatca
     4801 gataacaact taaatattag tctcatggga tataattgaa tactttcatc agtcttaatg
     4861 tacggatgag gaaatggtat cgcccacaac atagtaagaa aaattttttg aatatattca
     4921 ttattatcca agtgtttcaa aaataaatta cccaatggac tgaacaggaa tttctgtgta
     4981 acttgcccac acacatcacg ataaccaaac atatagaatg ataattcttt tattttatga
     5041 gtagtagcat ccaatgattt acctgtattt cgtctatggt ataaatctag tttttccaat
     5101 ttttcagata acttagcttt atcctctaca gatataaaag aatttgtttt caaaatacct
     5161 gcaaatttac ataaaatatg aaaattctgt aaatgtttat ctattaccca gcgcgcagtt
     5221 gtcatatcta ttttcctatt ctctctacaa tttttttaat taacaatgga ggaatagatt
     5281 caccaataca ttgccgaatt aataattctg atgtatcgtc gggaatattc caatcaatag
     5341 gtaatgatgt taaaagcatt aactctaatg gtgttaaaac tcttgcatct gaatatgttc
     5401 catcaggcat agaccgtcca ggatgaacat ttaattgtga actgatagcg tcattacgaa
     5461 tagtaatagt tggggcagga gcatcccact ccatacggcg ataagttgta ttataacttt
     5521 taattttttc accatttttt ttctttggat aatgttctat attatcaaaa gcagatcgtc
     5581 ctgttggcgt attttttagc catataatgt gctccggagc atgtgtacgt gcaaaatgcc
     5641 atttcacatt agacttttgt ccagactcaa tactaggcaa aaaactaata gcatcacgaa
     5701 cagaaatggt ttttgtaact ttttccggca ttccccaaat agttgaatgt ttattcatac
     5761 gaataatagc tcgtttacga tgttgtgcaa caccataatc ggcagaatca aaaatatgag
     5821 tttgaatata atattcgcaa ccaaataaat cttgcaaaat tacttctact gtttgtaatg
     5881 tccccttata aggtaactta atttttaaaa aaaatggaac attttcaatc aaaacaaaag
     5941 ttgggcgttt taataaaata aattcgatta ctctgaatat taaatgatta cgtttatcat
     6001 tagccatctc ttgaatgtta cgatttttcc ctgcaacact catgccttga caaggaggag
     6061 aagcaattaa aaaatctaat cgattcggca cgctctgtat taaattttga aacacttcct
     6121 catgaagtat atcacctata atcattttac tttcgggata tagagcttta tataaattag
     6181 cacgttctgg caccaattca tttgcagcta taatcttaat acccgcatta tgcaagtagg
     6241 tttctgcaat ccctgcactc gaaaacaaag aagcccctat catcatagaa ccaaacccaa
     6301 attaactata taatctctac aaagcaataa attatgcctc tttaaacaaa attaggaatg
     6361 taatttcaca acaaaatatc aaatgtttta tatcttacat ttgaattttc ctaagcagcc
     6421 tgaaaaccaa gagtaggctg cttttccata ttcaggcagc ctacacaatc attttacaaa
     6481 ctgcttcaaa aaattcaaat cgttatcaaa aaacaagcgc aaatcgttca cgttgtaacg
     6541 cagcatcgcg aaacggtcga gaccgatacc gaaagcgaaa ccggtgtatt tttcagaatc
     6601 gatattcaca tttttcaaca cgttgggatg caccatgccg cagccgccga cttccagcca
     6661 tttgccgttt tcgcccataa tgtcgatttc ggcagacggt tcggtgaacg ggaagaaaga
     6721 cgggcggaaa cgtacttgca aatcatcgcg ttcaaagaag cgacggataa aatccgtgaa
     6781 cactgctttc aaatcggcaa aagttacgcc ctcttctacc cacaaacctt ccgcctgatg
     6841 gaacataggc gagtgcgtgg catcgctgtc cacacggtaa acgcggccgg gggcgataat
     6901 gcggatgggc ggctcttttt tatcgagcat atagcggatt tgaatcgggg aagtgtgcgt
     6961 acgcaaaaca tcgccgtttt caacgtaaaa cgtatcctgc atcgcacggg caggatggtt
     7021 tgcagggatg ttcagggctt ggaaattgtg aaaatcgtct tcgatttcag gcccgtccgc
     7081 cacttcgaaa cccattccgt gaaagagttc gaccacacgt tgcaaggtca gggttacggg
     7141 atgcaggctg ccgccttcct gagcgcgtcc gggcagggta atatcgaggg cttcggcggc
     7201 aagtcgggct tgcagcttga cttcgttgag ggcatcgcgt ttggcattaa aagccgtctg
     7261 aaaccggttt ttgcattcat tgatatgcgc acctatggtt ttgcgctctt caggcgacat
     7321 ttgccccaaa gttttcagaa gtccggtcaa ctcgccggtt ttgccaagat aacgggcttt
     7381 gatttgttct agagcgttga agtcttgcgc agcttctact gcggcaatgc cttctgcaac
     7441 gatgcggttt acattttcca taatatcaag tctgtcaatt aatgatatgc cacctgaaac
     7501 aacgaggccg cctgtatagc ctgacatatc agactcttca gacgacctta ttttcttcac
     7561 ggtcaatcca ttggataaat tttctgtata gtggattaaa tttaaaccag tacggcgttg
     7621 cctcgccttg ccgtactatc tgtactgtct gcggcttcgt cgccttgtcc tgatttaaat
     7681 ttaatccact atattttaac gcaaatttat ttaaaaaaat agactttaaa gaaagaaaat
     7741 caatcacata gaatttctgc aaacaaagaa aaaaggaagc cgcagcttcc ttttcaattt
     7801 tttggattaa gcagccaaag cagctttggc tttttcaacc aattgtgcaa aagcggcttt
     7861 atcgaacacg gccaaatcag ccaatacttt gcggtcgatt tcgatagagg cgcgtttcag
     7921 accattcata aatttgctgt aagacaaccc gttttcacgc gcacctgcat tgatacggac
     7981 aatccacaat tgacggaatt ggcgtttgcg ttggcggcgg tcgcggtatg cgtattggcc
     8041 ggctttcatt accgcctgct tggcaacgcg gtaaacgttt ttacgacggc cgcggtagcc
     8101 tttggctaac gcgaagattt tttggtgacg ggcacgggcg gtaacaccgc gttttacgcg
     8161 tggcatattc taaactcctt aagcgtaggg taacatttta gcaacagaag ccaaatcgcg
     8221 atcgtttacc atagaggtac cgcgcagttg gcgtttgttt ttggtggtct ttttagtcaa
     8281 gatgtggcgt ttgaacgcat gagcgcgttt cacaccgccg ttacccagta ctttaaagcg
     8341 ttttttcgcg ctagacttgg ttttcatttt aggcatggga aaactccatt cgttatcgga
     8401 taaggcatta gggggtttta aaacatcggt ttcaaacact tgaacccaca ataccacggt
     8461 tttttgccgc aattgaaaac ttactccgaa gcggcaatcg gagtaagcgg agaattatag
     8521 ctttattttt tcttcggcgc aatcatcatc accatttggc gaccttccat tttgggaaag
     8581 gactcgattt gcgccacttc agccaaatct tcttttacac gttccaaaag ttgcgcgccg
     8641 agttgctggt gagccatttc acggccgcgg aaacgcaatg tcactttgac tttatcgccg
     8701 tcggcaagga agcggttaat gttgcgcatc ttgatttgat aatcgccctc atccgtaccc
     8761 ggacggaatt taatttcctt gatttgtacc tgcttttgat ttttcttggc ttcgtcgcgc
     8821 ttcttggctt gttggtattt gtatttaccg taatccatca gtttgcatac aggcggttta
     8881 gcagttgggg aaatctctac caaatcgaca tcctgccctt cggccatagc caaagcttca
     8941 cgaactgaaa cgacaccaag ctgttcgcct gactcactga ttaaacgcac ttctttggcg
     9001 gtaatttcgc cgttgattcg tgcttcgcgt tcttgagcga tgatgaatac tcctataaaa
     9061 attaatgatt gacgagggca tcagtgattt cttgctgcaa ttgcgcaatg aaatcatcca
     9121 aatccaaaga acccaaatct tctgctttgc ggcgtaccgc cactttgttt tcctgcttct
     9181 ccttatcgcc gacaacgatt tgataaggga aacggtattg gctgttgtcg cggattttgt
     9241 aaccgatttt ttcgttacgc aaatccaact cggcgcggaa tcctgccgcc tgcaatttgg
     9301 cagccacttc acggcagtaa tccgcttgat tttcggtgat attcataatc accatttgaa
     9361 ccggcgccag ccataacggg aaagagcctg catggttctc aatcagaatg ccgataaacc
     9421 gctccaaaga acctaaaatg gcgcgatgca acataacagg ccgcgcgcgg tcgttgtttt
     9481 cggttacata ttctgcatcc aagcgttccg gcaagacgaa atccagttgt aatgtaccgc
     9541 attgccaaga acgacccaag gcatctttga cgtgatattc gattttaggc ccgtaaaatg
     9601 caccctcgcc cggcaattcg ccccattcca cgccgcaggc agtcaatgcc tcgcgcaaac
     9661 cctgctctgc cttatcccac acgtcatccg aacctgcgcg tttttcaggg cgaagagaaa
     9721 gcttgacgga tacatcatgg aaaccaaact gtttgtagat gcgaaccaac aattcattga
     9781 acgcacgggc ctcgctgacg atttgatctt cggtacagaa aatatgcgca tcatcctgca
     9841 cgaacccacg aacccgcatc agaccatgca atgcaccgct cggctcgttg cggtggcagg
     9901 aaccgaattc cgccaaacgc atcggcaaat ctcgatacga acgcaaaccg ttgttaaaaa
     9961 tttgaacatg acccggacag ttcatcggtt taaccgcata ttcgcgtttt tccgaactgg
    10021 ttacgaacat attgtctttg tagttttccc agtgtccgga tttttcccaa aaggttttat
    10081 ccatgatttg aggcgttttg acctctttat aaccggcggc gttcagctct ttacgcatat
    10141 gctgttcaat cacttgccac aaagcccagc ctttaggatg ccaaaacacc atgcccggtg
    10201 cttcgtcttg caaatggaac agatccaatt gcttgccaag tttgcggtgg tcgcgctttt
    10261 cggcttcttc gatacgttga atataggctt tcaactcgtc ttttgtcgcc caagccgtac
    10321 cgtatatgcg ttgcagcatt tcattgttgc tgtcgccgcg ccagtatgcg cccgccaact
    10381 tggtcagttt gaagtttttc aggaaacggg tattcggaac gtgcggtccg cggcacatat
    10441 cgacatattc ctgatgatga tacatcccca tcgcttccac ttcgggcata tcgtcaatca
    10501 ggcgcagttt gtattcttcg ccgcgctctt gaaaaatttt aatcgcctcc gcacgcggag
    10561 tcatgatttt gaccacatca tagtcttggg caatcaattc tttcatacgc gcttcaatgg
    10621 cggcaacatc ttccggtgta aacggttttt ccgtggcgat gtcgtaataa aagccctctt
    10681 caatgacggg gccgataacc atttttgcat taggatagag ttgcttgacg gcatgcccga
    10741 caagatgggc gcaggaatgg cggatgattt cgatgccttc ctgatctttc ggagtaatga
    10801 tttgaacagc agaattttca acaatcgggt cgcacgcatc gaccaatttg ccgtttaccc
    10861 tgcctgccac cgccgccctc gccaaaccga caccgataga cgcagcaatt tgagccacgg
    10921 taacggggga ttcgtattgg cggactgagc cgtccggcaa ggtaatgttc aacatcaaaa
    10981 agctccaaaa cattaaaaaa taacggcata aatgccgtta tgggaatttg gtaggcacga
    11041 ttggattcga accaacgacc cccaccatgt caaggtggtg ctctaaccaa ctgagctacg
    11101 tgccttcaaa gaatttttgc attttatcgg gtcgttttaa tttttgcaag aggtatgtgc
    11161 atttctttat gcaacattgt ggcaagattt ggggatgtcg tctgaaaaac cgtgggaatt
    11221 catttataat gccgtctttt aaaacatatt tcgccccctg tcgcccaact gacattcaat
    11281 cttatgctta aatttacttt acacaaaaaa gacggatacg cccgacgcgg cacgctggag
    11341 ttgaaccacg gcaaaattga aacgccggta tttatgcctg tcggtactta cggctcggtt
    11401 aaggcgatga acccgcaaaa cctgcacgac atcaaggcgc aaattatttt gggcaacact
    11461 tatcatttgt ggctgcgtcc gggcttggag gtcgtcgaac agtttggagg gcttcacggc
    11521 tttatcggct gggacaaacc gattttgacc gactcgggcg gttttcaggt tttttctttg
    11581 tcggatatgc gcaagctgac ggaagaaggc tgtacgttta aaagcccgat caacggcgac
    11641 aagctgtttt tatcgcctga aatttccatg aaaatccaaa cggttttgaa ctcggacatc
    11701 gcgatgcagc tggacgaatg cacgccgggc gaagcaacgc gcgaacaggc gaaaaaatcg
    11761 ctgcaaatga gcctgcgctg ggcggaacgg agcaaaaaag cctttgaaga tttgaaaaac
    11821 ccgaacgcgc tgttcggcat cgtgcaaggc gcgatgtatg aggatttgcg cgaagaatcg
    11881 ctgcgcggtt tggaacagtt tgattttccc ggccttgccg tcggcggctt gtccgtcggc
    11941 gaacccaagc ccgaaatgta ccgtatgctg cgcgccgtcg gtccgattct gccggaacac
    12001 aagccgcatt acctgatggg cgtaggcacg ccggaagacc tcgtgtacgg cgtggcacac
    12061 ggcatcgata tgttcgactg cgtgatgccc acccgcaatg cgcgcaacgg ctggctgttc
    12121 acccgtttcg gcgatttgaa aatcaaaaac gccaaacaca agctcgacaa gcgtccgata
    12181 gacgaaagct gcacctgcta cgcctgccaa aacttcagcc gcgcctacct gcaccatctg
    12241 caccgcgccg gcgaaatctt gggcgcacag ctcaacacca tccacaacct gcatttctac
    12301 caagtcatta tggcggaaat gcgcgatgcc atagaacaag gcaaatttgc cgactggcag
    12361 gcgcgattcc acgaaaaccg tgctcgcggc acagactgac tcccggcaat gccgtctgaa
    12421 gccgcttcag acggcatttt gccgctttac cctacccgca ctatttttca gaaaccgatc
    12481 atgcttccat tctttccaga accctccctt tcctatacgc aacaaaaccg taccgccgtt
    12541 ttgctgttga acctcggcac gcccgacgcg ccgaccgcgc aggcggtacg accttatctg
    12601 aagtcctttc tgaccgaccg gcgcgtcgtc gaactgccca aatggctgtg gtatcccatt
    12661 ctgcatggtc tggtactgac gttgcgcccc aaaaaaagcg cgcacgccta tgaaaaaatc
    12721 tggtttaagg aaggttcgcc cctagaagtt tacacagcac gccaagctgc cgcgcttgcc
    12781 gaacgtatgc ccgacctcat cgtccgccac gccatgacct acggcaatcc ttcggtggca
    12841 gacgtattgt cggaactgaa ggcgcaaggc gcgggcagac tgctggtcat cccgatgtac
    12901 ccgcaatatg ccgcttccag cagcggagcg gcagtagata aggtgtgcga acaattactg
    12961 ctgcaacgga accaaatgag cgtccgcacc gtttcgcgct tttatgacga taccggctac
    13021 attgatgcga tgaaaaacca catcctccga tattgggcgg aacacggacg tgggaaaaaa
    13081 ctgatgttga gttttcacgg cgtaccgcag aagcactacg acctcggcga cccctatccc
    13141 gacgagtgcc gccacaccgc caaactgctt gccgaagcac tggaactgac cgaagaccaa
    13201 tatgtcgtat cgttccaaag ccaattcggc agggcaaaat gggttacacc gagcacgcag
    13261 gatttgttcg gcaaactgcc caaacagggg gtaaccgagc tggacgtatt ctgcccgggc
    13321 tttttggcag actgtttgga aaccatggaa gaaatcgccc tgatggggcg ggaacagttt
    13381 tacgaagcag gcggcaaaag ctaccgctac atcccctgcc tcaacgacaa ccccgactgg
    13441 atagacgcac tcgtcgcact tgccgaagaa aaccttggcg gctggcgttg aaactgtttg
    13501 acccatgtct aaaatgccgt ctgaacgccg tgttcagacg gcattttccc gctactttag
    13561 cgtatgatgg catctatgcc ggacaacaac atcaagtgca accttactac cgattcggca
    13621 aaaaaatctt tcacccgcta cgcaaaatca acaacaaggt ttcaaacatt aaggaaacac
    13681 caatgaacac aacccgactg ccgaccgccc tcgtcttggg ctgcctctgc gccgccgctt
    13741 ctgccgccga caacagcatc atgacaaaag ggcaaaaagt gtacgaatcc aactgcgtcg
    13801 cctgccacgg caaaaagggc gaaggccgcg gaaccatgtt tccgccgctc taccgctccg
    13861 acttcatcat gaaaaaaccg caggtgctgc tgcacagcat ggtcaaaggc atcaacggta
    13921 caatcaaagt caacggcaaa acctacaacg gattcatgcc cgcaaccgcc atcagcgatg
    13981 cggacattgc cgccgtcgcc acttatatca tgaacgcctt tgacaacggc ggcggaagcg
    14041 ttaccgaaaa agacgtaaaa caggcaaaag gcaaaaaaaa ctaaacagac aaaatgccgt
    14101 ctgaaaccgg caatccggct tcagacggca ttcaaatcaa acctttctaa cgcggtactt
    14161 tcagccccat agacccgata ttgccgccac cgtcaacctc cttcgcggtc agcataaagc
    14221 cgccgatgtc aatacggccg cactcgaccg gctcctgact gtcggaacgc ttatcgaaaa
    14281 gctcggcaag gctcaaaccc tcttcgcccg cttccagcct caaaccgtaa gcaagtgcca
    14341 aatcacccga acgtgctgcc ggcgaaacga caaactcgcc gaaaaaatca aaatgctcac
    14401 ggacaccgat acccgtctcg gtaaagtatt tcgccatttt atagtgaa
//
LOCUS       DAXHNP010000037        14136 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.037, whole genome shotgun sequence.
ACCESSION   DAXHNP010000037 DAXHNP010000000
VERSION     DAXHNP010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14136
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.037"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..1707
                     /locus_tag="ACFM5C_000819"
     CDS             <1..1707
                     /locus_tag="ACFM5C_000819"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006306 - obsolete DNA methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6068562.1"
                     /translation="LYTKLTRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSRYTADGKQ
                     AVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYYFVKKKQQDSF
                     GYNTNFKLSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFI
                     GNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGF
                     YKKGAPMRATGTEDKREDRPEMFYPFLVKNNTVSTITDEEFSQIYNKDLEVFNDDFIQ
                     KLKEKYENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRP
                     ELDDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESD
                     IVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKKVIDGEQGGISKAVNWQ
                     GGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSVNEFSQIIQE
                     PEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQFADCLNDDDKAVSRAFYQAEKKN
                     GE"
     gene            1697..4483
                     /locus_tag="ACFM5C_000820"
     CDS             1697..4483
                     /locus_tag="ACFM5C_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HFC6068563.1"
                     /translation="MANNKTLFEVIENRKAVYLEDGDDEKYRLPKFVSNNLKYPFFEW
                     QKSALENFVIFDRTSKLKDFPDIKNRPTHLLFNMATGAGKTMMMAALILYYFEKGYRH
                     FLFFVNQNNIVDKTENNFIDPTHAKFLFTEKILQGDTVIPIRKVETFSPHSDGIEIKF
                     TSIQKLYNDIHTERENQTTLADLHELNLVMLGDEAHHLNAQTKGKKQGELDLEVELKA
                     NAGNAEIERKGWEHMVLELLLNKNGNPSQNVLLEFTATLPENADVQQKYADKIITKFG
                     LKEFLQKGYTKEINLVSSTLGKKERVLHALLFAWYRHQIALKYGIANFKPVMLFRSKT
                     IDESKADYLAFLNWAENVQAVDFSFLTTFSTSLNDSDSDNANEQGKTRTEQALKFMQE
                     KGVEFAHLADWVKQNYQKHNVIITNSETNKTKTEKTDSETEKLLNNLEAADNPIRAIF
                     TVDRLTEGWDVLNLFDIVRLYEGQNGGGSNKKSGKTAAATVSEKQLIGRGVRYFPFAF
                     EGKQPNKRKFDNDMQHELRILEELFYYAHDEQSRYISELKNELRKDGYLPEKDDDKVL
                     ATFKLKSEFAANKDFRELLIWANKKIPNPNAKSNNADSLKANPQTLSFQVHGNQLLQE
                     TQFTADENDETARQIGTQNNFTQTIKMSEMERHIFNKALHIKGKNSQSLFHFNRLQSK
                     LDIQNRNELQNNLLKDWQIEFLGLGQDKQVRLDDKLAGCLKILEMVEKHLNESDMPFI
                     GTKEFTPKKLWEIFGTPKQKWVKKDDVKTTIATQNDWYVMNNFAGTGLEEALIQFISA
                     RLGDLKSKYDVHLIRNEEVFKLNNFADGEGFMPDFILLLKDKQKSSSNGVNDFLHYQI
                     FIEPKGEHLVETDGWKEEFLEAITVEYGMDKILQKDTPHYRLIGLPFFTDHQKNGQFT
                     ESFPLGAASLEKMK"
     gene            complement(4627..5799)
                     /locus_tag="ACFM5C_000821"
     CDS             complement(4627..5799)
                     /locus_tag="ACFM5C_000821"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFC6068564.1"
                     /translation="MKRDLSKMTCIEDLRRVAKRKMPRMFYDYIDSGSWTETTYRENT
                     SDFKDIRFRQKVLVNMEGRSLETKMIGQDVKMPVAIAPTGFTGMAHADGEILAARAAE
                     KFGIPFTLSTMSICSIEDVAENTSAPFWFQLYVMRDREFMENLIKRAKDAKCSALVLT
                     ADLQVLGQRHKDIKNGLSAPPKPTIANLINLATKPEWCMKMLNTERRTFRNIVGHAKN
                     VGDLSSLSSWTSEQFDPRLSWDDVARIKDLWGGKLIIKGIMEPEDAEKAAKSGADALI
                     VSNHGGRQLDDTVSAIKALPDIVSAVGSDIEVWMDSGIRSGQDILKAWALGAKGTMIG
                     RAFLYGLGAYGEEGVTRALEILYKEMDISMAFTGHRDIQDVDASILRGKDWGRETV"
     gene            6149..6595
                     /gene="iscR"
                     /locus_tag="ACFM5C_000822"
     CDS             6149..6595
                     /gene="iscR"
                     /locus_tag="ACFM5C_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HFC6068565.1"
                     /translation="MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQ
                     LFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHHGA
                     PCLTHDLWENLNKTINDYLGSVTLQSIIEQKNNSDGSRVVQFTHIH"
     gene            6624..7838
                     /locus_tag="ACFM5C_000823"
     CDS             6624..7838
                     /locus_tag="ACFM5C_000823"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HFC6068566.1"
                     /translation="MTVKTPVYLDYAATTTVDKRVAEKMIPYLTETFGNPASNSHAFG
                     WEAEEAVEKARADIAALINADPKEIVFTSGATESDNLAIKGAANFYKTKGKHLITVKT
                     EHKAVLDTMRELERQGFEVTYLGVQENGLIDLEELKAAIRDDTILVSVMWANNEIGVV
                     QDIPAIGEICRERKIVFHVDAAQACGKVPVDVEAAKIDLLSMSAHKVYGPKGIGALYV
                     RRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRIAKEELAQDTAHYLKLRDI
                     FLKGIEGIEEVYINGDLGHRAPNNLNVSFNFVEGESLIMAVKELAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSLRITFGRMTTEEEVQFAAELIKSKIGKLRELSPLWEMFKD
                     GIDLNSIEWAAH"
     gene            7984..8829
                     /locus_tag="ACFM5C_000824"
     CDS             7984..8829
                     /locus_tag="ACFM5C_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HFC6068567.1"
                     /translation="MKIANALIHNTVRIECLSADGQSISTGTAFLFLFDFDKTGVIPV
                     LVTNKHVVFVESAKKIAITLTKDENGSPNHKENITFTIEDFIQNCLPHPDENIDLCIA
                     PVGHFFNQLINHNFSPFIKGIRESDIMQTEEMDQLSAFEEVFMIGYPNGLWDSKNNLP
                     IFRTGITATHPAIDFEGKKEFMIDVACFPGSSGSPVFKYIPAGLRKIENDGFAITADE
                     TFKLMGILYAGPQQTISGEIYITTVNKPISVSSIPINLGFVIKAEKLLDFKPILKNFL
                     EKNRE"
     gene            8976..9104
                     /locus_tag="ACFM5C_000825"
     CDS             8976..9104
                     /locus_tag="ACFM5C_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068568.1"
                     /translation="MNEQELDLDNLDNLLDDFDGVTVEGGVDSENDEGCEGGACKI"
     gene            9172..9558
                     /gene="iscU"
                     /locus_tag="ACFM5C_000826"
     CDS             9172..9558
                     /gene="iscU"
                     /locus_tag="ACFM5C_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HFC6068569.1"
                     /translation="MAYSDKVIDHYENPRNVGTFDKNDESVGTGMVGAPACGDVMRLQ
                     IKVNDEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDDALAIKNSEIAEELELPPV
                     KIHCSILAEDAVKAAVADYRKRQENR"
     gene            9645..9965
                     /gene="iscA"
                     /locus_tag="ACFM5C_000827"
     CDS             9645..9965
                     /gene="iscA"
                     /locus_tag="ACFM5C_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HFC6068570.1"
                     /translation="MITLTENAAKHINDYLAKRGKGLGVRLGVKTSGCSGMAYNLEFV
                     DEADGDDLIFEGHGARIYIDPKSLVYLDGTQVDYTKEGLQEGFKFENPNVKDSCGCGE
                     SFHV"
     gene            complement(9925..10146)
                     /locus_tag="ACFM5C_000828"
     CDS             complement(9925..10146)
                     /locus_tag="ACFM5C_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor A"
                     /protein_id="HFC6068571.1"
                     /translation="MGGKVQHNKGKIRDNALKALVKSDLFRHKVERKRKGKGSYNRQE
                     AKKWRDGFDTVPPFLCLKRGSFRRSRRSL"
     gene            10228..10728
                     /gene="hscB"
                     /locus_tag="ACFM5C_000829"
     CDS             10228..10728
                     /gene="hscB"
                     /locus_tag="ACFM5C_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001671 - ATPase activator activity
                     [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HFC6068572.1"
                     /translation="MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFE
                     QKQAVMMSSTINDAYRTLKNPIDRAAYLLKTSGIDADAPEHTAFAPEFLMQQMEWRET
                     LMEARAGNDLESLKNLDNEIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRN
                     EISSAL"
     gene            10826..13576
                     /gene="gyrA"
                     /locus_tag="ACFM5C_000830"
     CDS             10826..13576
                     /gene="gyrA"
                     /locus_tag="ACFM5C_000830"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HFC6068573.1"
                     /translation="MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQ
                     NFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS
                     EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELID
                     IIQAPDFPTGATIYGLSGVREGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQ
                     VNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTP
                     LQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGK
                     AVALSNIDEIIRLIKESPNAVEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAA
                     NIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPER
                     ITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTT
                     DYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRN
                     SRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGI
                     KAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISD
                     GIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQV
                     LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG
                     VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVISNVTEPEV
                     EN"
     gene            13733..14136
                     /locus_tag="ACFM5C_000831"
                     /pseudo
     CDS             13733..14136
                     /locus_tag="ACFM5C_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4366 a         3392 c         3036 g         3342 t
ORIGIN      
        1 ttatacacta aattaacccg aaaaagacaa gaaatctttt ttaatcaaac gcttgctttt
       61 gatgaaatcg atcggctttt tgacgcaaaa gcattctcaa aattctctcg ctataccgca
      121 gacggcaaac aagcggttgg cgaaatcaaa cgtcattcag acggcacacc cgccgaaaat
      181 ctcattatca aaggcaataa tctgatagcc ctacattcgc ttgccaaaca gtttaaaggc
      241 aaagtgaagt tgatttatat tgatccgcct tattattttg ttaaaaagaa acaacaagat
      301 agttttggtt ataacactaa ctttaaatta tctacttggc ttacatttat gaaaaatcgt
      361 ttatcaattg ccaaagaatt attaactgat gatgggatta ttgttatttc cattgatgat
      421 gacggaaatg cttatttaaa gattttgtta gatgaaattt ttggatttga aaattttatc
      481 ggaaatttac ccactattat gaatttaaaa ggtaataatg atgaatatgc ttttgcaggc
      541 actcacgaat acacactagt ctttgctaaa aataaagata aatctacttt ttatgaattt
      601 ccaatagatg aagataattt tttagagaaa tgggaagaag atgaaattgg gttttataaa
      661 aaaggagctc caatgcgagc aacaggaacc gaagataaaa gagaagatag acctgaaatg
      721 ttctatcctt ttttggtaaa aaataacaca gttagtacaa ttacagatga agaattttct
      781 caaatctata ataaagattt agaagtattc aatgatgatt ttattcaaaa actaaaagag
      841 aaatacgaaa atcttggata caattttatt ttacctattg ctgataaaca atgggggcgt
      901 tggcgttggg ggtattcaat aaagaataag gcaaggctgc agacggatat tattgttagc
      961 caatctaaaa atggaatttc cttgtataaa aaacaaagac ctgaattaga tgatttacct
     1021 acaaaaaaac ctaaaactat tttttataaa cctgaataca gtagtggtaa tggaactgaa
     1081 cagatgaaaa atctttttgg tgaaaaggca tttaaaaatc ctaaaccaga agaacttatc
     1141 caagatttta ttaccatcac aaccaacgaa tccgacatcg tcttagacta ccatcttggt
     1201 agtggcacaa ccgccgccgt tgcccacaaa atgaaccgac aatatatcgg tattgaacaa
     1261 atggattata ttgaaacgct tgccgttgaa cgcttgaaaa aagtgattga tggcgagcaa
     1321 ggcggtattt ccaaagccgt gaattggcaa ggtggtggcg agtttgttta tgccgaactt
     1381 gccccattta acgaaaccgc aaaacaacaa attttggctt gcgaagattc agacggcatc
     1441 aaaacgctgt ttgaaggttt atgcgaacgc tatttcttga aatacaacgt cagcgtaaat
     1501 gaatttagtc aaatcattca agagcctgaa tttcaatctt tgccattaga cgaacaaaaa
     1561 caaatggtgc ttgaaatgtt agatttaaat caaatgtatg tttcattatc cgaaatggac
     1621 gacgagcaat ttgcagattg cctgaacgat gacgataaag cggtaagccg tgcgttctat
     1681 caagcggaga aaaaaaatgg cgaataataa aactttgttt gaagtaattg aaaaccgcaa
     1741 agctgtgtat ttggaagacg gagatgatga aaaatacagg ctgcctaaat ttgtttcaaa
     1801 taatttgaaa tatccgtttt ttgaatggca aaaatcggct ttagaaaact ttgtgatttt
     1861 tgaccgcact tcaaaattaa aggattttcc cgatatcaaa aaccgcccta ctcatttgct
     1921 atttaatatg gcaacaggtg caggcaaaac gatgatgatg gcggcattga ttttgtatta
     1981 ttttgaaaaa gggtatcggc attttctgtt ttttgtgaat caaaacaata tcgtggataa
     2041 aacggaaaat aattttattg acccgacaca cgcaaaattt ttatttaccg agaagatttt
     2101 gcagggcgat acggtaattc ccattcgcaa agtggaaacg ttcagcccac attcagacgg
     2161 cattgaaatt aaatttacca gcattcaaaa gctgtataac gatattcaca ccgaacggga
     2221 aaaccaaacc acattggcgg atttgcacga attgaatctt gtgatgctgg gcgatgaagc
     2281 acaccattta aacgcgcaaa ccaaaggcaa aaaacaaggc gagttggatt tggaagtgga
     2341 attaaaagcc aatgcaggca atgccgaaat tgaacgcaaa ggctgggagc atatggtttt
     2401 ggaattgtta ctcaataaaa atggcaatcc cagccaaaat gtgctgttgg aatttaccgc
     2461 cacgctgcct gaaaatgctg acgtgcaaca aaaatacgcg gataaaatca tcacaaaatt
     2521 tggcttaaaa gaatttttgc aaaaaggtta taccaaagaa atcaatttgg tatccagtac
     2581 gctgggcaag aaagagcggg tgttgcacgc tttattattt gcttggtatc gccatcaaat
     2641 cgctttgaaa tatggcattg ccaatttcaa gcctgtgatg ttgtttagaa gtaagacgat
     2701 tgatgaatca aaagcggatt atctggcatt tttaaattgg gcagaaaatg tgcaggcggt
     2761 tgatttttcg tttttaacta cattttcaac aagcttgaac gatagcgata gcgataacgc
     2821 caacgaacaa ggcaaaaccc gcactgaaca agccctaaaa tttatgcagg aaaaaggcgt
     2881 tgagtttgca catttggcag attgggtaaa acaaaattat caaaaacaca atgtgattat
     2941 taccaactcc gaaaccaaca aaaccaaaac cgaaaaaacc gacagcgaaa cagaaaaatt
     3001 gctgaataat ttggaagcgg ctgataatcc gattcgtgcc atttttacgg tggacagatt
     3061 aaccgaaggt tgggacgttc tgaatttgtt tgatattgtg cgtttgtatg aagggcaaaa
     3121 cggcggcggt tcaaataaaa aatcaggcaa aacggctgcc gccaccgtat cggaaaagca
     3181 gttgattggt cgtggcgtgc gttattttcc atttgcgttt gaaggtaaac agccgaataa
     3241 acgcaaattt gacaacgata tgcaacacga attgcgtatc ttggaagaat tgttttatta
     3301 cgcgcacgat gagcaatccc gctatatttc agaactgaaa aatgagttgc gaaaagacgg
     3361 ttatttgcct gaaaaagacg atgataaggt attggcaaca tttaaactca aatctgaatt
     3421 tgccgctaat aaggatttta gagaattgtt aatttgggcg aataaaaaaa tccccaaccc
     3481 aaacgccaaa agcaataatg cagacagcct aaaagccaat ccacaaacgc tttcattcca
     3541 agttcacggt aatcaactgt tgcaggaaac gcaatttaca gccgatgaaa atgatgaaac
     3601 agcccgacaa atcggcacac aaaataattt tactcaaacc ataaaaatga gtgaaatgga
     3661 gcggcacatt ttcaataaag cattacatat caaagggaaa aatagtcaat ctttattcca
     3721 tttcaaccgt ttgcaaagca agctcgacat tcaaaatcgc aatgaattgc aaaataactt
     3781 gttgaaagac tggcaaattg aatttttagg attagggcaa gacaaacagg ttcgcctgga
     3841 cgataaactt gcaggctgcc tgaaaatctt ggaaatggtt gaaaaacatc tgaatgaaag
     3901 tgatatgccg tttatcggta caaaagaatt tacacctaaa aaattatggg aaattttcgg
     3961 cacgccaaaa caaaaatggg tcaaaaaaga tgatgtaaaa acgactattg ccacgcaaaa
     4021 tgattggtat gtgatgaata attttgccgg aacgggtttg gaagaagcgt taattcaatt
     4081 tatttcagcg cgtttgggcg atttgaaatc taaatatgac gttcatttaa tccgtaatga
     4141 agaagtgttt aaattgaata actttgccga tggtgaagga tttatgccgg actttatttt
     4201 attgctgaaa gataaacaaa aatcttcttc caatggtgtg aacgactttt tgcattacca
     4261 aattttcatt gagcccaaag gtgagcattt agtggaaact gatggatgga aagaagaatt
     4321 tttagaagcc atcactgtgg aatatgggat ggataagatc ctgcaaaaag atacaccgca
     4381 ttatcgtttg atcggtttac cgttttttac tgatcatcag aaaaatggac aatttacgga
     4441 gtcattccct ttaggtgcgg catcgcttga aaaaatgaag tagtgcattg caggcaaccc
     4501 cgtttgacaa aacttccttt acaaaagggc gttttgtcag atatttaatc aacacattat
     4561 taaaatacag ccaaatttta atgccgtccg aaccctgtgt tcagacggca tcgtattttt
     4621 cagtatctaa accgtttccc tgccccaatc tttgcctctc aaaatcgaag catcgacatc
     4681 ttgaatatcg cggtgtcccg taaacgccat agatatatcc atttctttat acaggatttc
     4741 cagcgcacgg gttacgcctt cttcaccata cgcacccaaa ccatacagaa acgcccggcc
     4801 tatcatcgta cctttcgcgc ccaaagccca cgccttcaaa atatcctgac cgctgcggat
     4861 accgctgtcc atccaaactt cgatgtcgct gcccactgcg ctgacgatgt cgggcaaggc
     4921 tttgatggca gacacggtat cgtcgagctg tcggccgccg tggttggaaa caatcaatgc
     4981 gtccgcgccg cttttcgctg ctttttccgc gtcttcgggt tccataatgc ctttgataat
     5041 cagcttgccg ccccacaaat ctttaatacg cgccacatcg tcccagctca ggcgcgggtc
     5101 gaattgttcg gaagtccatg aagacagcga agacaaatcg ccgacgttct tcgcgtgtcc
     5161 gacgatattg cggaacgtgc ggcgttccgt gttcagcatt ttcatgcacc attccggttt
     5221 ggtcgccaga ttgattaaat tggcgatggt cggtttcggc ggcgcggaca ggccgttttt
     5281 gatgtctttg tggcgttgcc ccaaaacctg caaatcggcg gtcaaaacca atgccgaaca
     5341 tttggcatcc ttcgcgcgct taatcaggtt ttccataaat tcgcggtcgc gcatcacata
     5401 aagctgaaac caaaacggcg cgctggtgtt ctcggcaacg tcttcaatcg agcagatgga
     5461 catggtggac aacgtaaacg gaataccgaa cttctccgcc gcccgcgccg ccaaaatttc
     5521 gccgtctgcg tgtgccatgc cggtaaaacc cgtcggcgca atcgccaccg gcattttcac
     5581 atcctgcccg atcattttag tctcaaggct gcgtccctcc atattgacca atactttttg
     5641 acggaagcgg atgtctttga aatccgaagt attttcccga taagtcgttt ccgtccacga
     5701 acccgaatcg atgtaatcgt aaaacatacg cggcattttg cgcttggcaa cgcggcgcaa
     5761 gtcttcgatg caggtcattt tgctcaaatc acgtttcatc ttgtttttcc ctgtttgaca
     5821 gcctgatgga atatgccgtc cgaaaccgct tgagccttca aacggcattt caggcaatac
     5881 ccaaataaat cactaagatt tagataatct atatcagtat caaaaataaa tcaaatcgtt
     5941 ttgaaaccgc ttgccggcaa aataccccga ccgccgctcc tcaaaaaaca taaccaactg
     6001 atttaaaaaa ccaaacaaat aaagtaaaat cagactatac cgccatttaa acaaacaatc
     6061 ggcaacagct cccccttact tgactgaaac actcagatat tggacaattc tccccactat
     6121 aaaaaagccg acacgggcaa ccaccaccat gagactgacc accaaagggc gttttgccgt
     6181 taccgctatg ctggatttgg cgatgaacgc gcaaaccggc gccgtcaaac tcagtgccat
     6241 cagcgaacgc caaaacatat ccctctccta tctcgagcaa ttgttcggca aactccgccg
     6301 cgccggactg gttgaaagcc tgcgcgggcc cggcggcggc tacatcctcg ccgcaccggc
     6361 ggcacgcatc aacatcgccc aaatcatcgc cgccgccgaa gaccggctgg acgcgaccca
     6421 atgcggcagc aaagccaact gccaccacgg tgcgccctgc ctgacgcacg acctttggga
     6481 gaatttaaac aaaaccatca acgactacct cggcagcgtt accctgcaaa gcatcatcga
     6541 acagaaaaac aacagcgacg gcagccgcgt cgtccaattt acacacatcc attaaataac
     6601 acccgaaaaa gaaagagcaa accatgaccg tcaaaacccc cgtttacctc gactacgccg
     6661 ccaccaccac cgttgacaaa cgcgttgccg aaaaaatgat tccctatctg accgaaacct
     6721 tcggcaaccc cgcctccaac agccacgcat tcggctggga agcagaagag gccgtcgaaa
     6781 aagcccgcgc cgacatcgct gccctgatta atgccgaccc caaagaaatc gtcttcacca
     6841 gcggcgcgac cgagtccgac aacctcgcca tcaaaggcgc ggcaaacttc tacaaaacca
     6901 aaggcaaaca cctcattacc gtcaaaaccg aacataaagc cgttttagat acaatgcgcg
     6961 aactcgaacg ccaaggtttt gaagtaacct acctcggcgt tcaagaaaac ggtttgattg
     7021 atttggaaga actcaaagcc gccatccgcg acgacaccat cctcgtttcc gtaatgtggg
     7081 caaacaacga aatcggcgtg gtgcaagaca ttcccgccat cggcgaaatc tgccgcgaac
     7141 gcaaaatcgt cttccacgtc gatgccgccc aagcctgcgg caaagtgcct gtcgatgtcg
     7201 aagccgccaa aatcgacctg ctctcgatgt ccgcgcacaa agtgtacggc cccaaaggca
     7261 tcggcgcgct gtacgtccgc cgcaaacccc gcgtccgcct cgaagcccaa atgcacggcg
     7321 gcggccacga acgcggcttc cgcagcggca cattgccgac ccaccaaatc gtcggtatgg
     7381 gcgaagcctt ccgcattgcc aaagaagaat tggcacaaga cactgcgcac tacctgaaac
     7441 tgcgcgatat cttcctcaaa ggcatcgaag gcatcgaaga agtctacatc aacggcgacc
     7501 tcggacaccg cgccccgaac aacctgaacg tcagcttcaa cttcgtcgaa ggcgaaagcc
     7561 tgattatggc ggtgaaagaa ctcgccgtat ccagcggctc cgcctgcacc tccgcctcgc
     7621 tcgaacccag ctacgtcctg cgcgcgctcg gccgcaacga cgaactggcg cactcatccc
     7681 tgcgtatcac cttcggtcgc atgaccaccg aagaagaagt gcaattcgcc gccgaactga
     7741 ttaaatccaa aatcggcaaa ctgcgcgaac tgtcgccgct gtgggaaatg ttcaaagacg
     7801 ggattgattt gaactcgatt gaatgggcgg cgcattaatt tatgaattag tacgatgata
     7861 tgagtatagt agataagatt ttcaaatatt ctcgccacct cgattattga gatatagtga
     7921 acttcttatc tacggataaa atttttatag atagtttaat atttaaatag aacttaaaaa
     7981 attatgaaaa tagccaatgc attaattcac aatacagtcc gtattgaatg cctttcagca
     8041 gacggccaat ctatatcaac gggaacggca ttcttattcc ttttcgattt cgacaaaaca
     8101 ggggtaattc cagttcttgt aacaaataaa catgttgttt ttgtagagtc cgcaaaaaaa
     8161 atagctatta ctttgacaaa agatgaaaat ggctctccaa atcataaaga aaatataact
     8221 tttacaattg aagattttat acaaaattgt ttacctcatc ctgatgaaaa tattgatcta
     8281 tgcattgctc ctgttggaca tttttttaat cagctgatta atcataattt ctcgcctttt
     8341 ataaaaggaa taagagaatc tgatattatg caaactgaag aaatggatca attatcagct
     8401 ttcgaagaag tttttatgat aggctatcct aatggcttat gggactcaaa aaacaactta
     8461 ccaatattta gaacaggaat tactgctacc catccagcta ttgattttga agggaaaaaa
     8521 gaatttatga ttgatgttgc ctgtttccct ggttcaagcg gttctccggt gttcaaatat
     8581 atacctgctg ggttaagaaa aatagaaaac gatgggtttg caattacagc agatgaaaca
     8641 tttaaattaa tgggaatcct atatgctgga cctcagcaaa caatatcagg ggaaatttat
     8701 ataacaactg ttaataaacc aatttctgta tcttctattc ctattaattt aggttttgtc
     8761 ataaaggcag aaaaactttt agactttaaa ccaattttaa agaatttttt ggaaaaaaat
     8821 agagaatgaa attatattaa aagattaata aatattagag actggcaatc caccttacct
     8881 aatctacatt aaaaataaaa aagaccgttt gaaacatcaa aaagattttt tcaaacgacc
     8941 taaaagccac cacatgaaat caaggataca aaaccatgaa cgaacaagaa cttgacctcg
     9001 acaatctcga caacctgctt gacgattttg acggcgttac cgtcgaaggc ggcgtcgatt
     9061 cggaaaacga cgaaggctgc gaaggcggcg cgtgcaaaat ctgactcagg ccgtctgaaa
     9121 accggcaaac aaaccacttt aaactatcaa aaacattaag gaaaccacat catggcatac
     9181 agcgataaag taatcgacca ctacgaaaat ccccgcaacg tcggtacttt cgacaaaaac
     9241 gacgaatctg tcggcaccgg catggtcggc gcgcccgcct gcggcgacgt catgcgcctg
     9301 caaatcaaag tgaacgacga gggcatcatc gaagatgcga aatttaaaac ttacggctgc
     9361 ggctcggcca tcgcttcgtc cagcctgatt accgagtggg ttaaaggcaa aagcctggat
     9421 gacgcgctgg caatcaaaaa cagcgaaatc gccgaggagt tggaattgcc gccggtaaaa
     9481 atccactgct ccatcttggc tgaagatgcg gtaaaagcgg ccgttgccga ctaccgcaaa
     9541 cgtcaggaaa acagataaag cccttcagac ggcatcatcc cgcaatgccg tccgaaccac
     9601 ccgccgcttc aggtccgtcc ggggcggtac aacaaggaag aaatatgatt acccttaccg
     9661 agaatgccgc aaaacacatc aatgactatc tcgccaaacg cggcaaaggc ttgggcgtac
     9721 gcttgggtgt gaaaaccagc ggctgctcgg ggatggcgta caaccttgaa tttgtcgacg
     9781 aagccgatgg cgacgacctg attttcgaag gacacggcgc gcgcatttat atcgatccga
     9841 aaagcctggt ttatctggat ggcacgcaag tcgattacac caaagaaggt ttgcaggaag
     9901 gtttcaaatt tgaaaacccc aatgtcaaag actcctgcgg ctgcggcgaa agcttccacg
     9961 tttaaggcat aaaaacggcg ggaccgtatc aaaaccgtcc cgccattttt tcgcttcctg
    10021 cctgttgtag ctgcctttgc ctttcctttt ccgttccacc ttgtgccgga acaaatcgga
    10081 tttcactaag gcttttaaag cattgtcgcg tattttgcct ttattgtgct gcactttgcc
    10141 gcccatattc agtcctttcg tttaagaagc ggcagattat aaggcaaaaa cagttttctg
    10201 ccaaaatctt acatttatca tcctactatg tcccaatatt tcaccctctt ccggattgaa
    10261 cccgctttcg atatcgacac cgaaaacttg gaacaaacct accgcgcctt ggccgcccgt
    10321 ttccatcccg ataaattcgc ttcagcttcc gcctttgagc aaaagcaggc agtgatgatg
    10381 tcttccacca tcaacgatgc ctaccgcacc ttgaaaaacc ccatcgaccg cgccgcctac
    10441 ctgctgaaaa catcgggcat cgatgccgac gcgccggagc ataccgcttt cgcccccgaa
    10501 ttccttatgc agcaaatgga atggcgcgaa acgctgatgg aggcacgggc aggcaacgac
    10561 cttgaatcct tgaaaaatct cgacaacgaa atccgcgacg agcaagaaaa actgttctgc
    10621 ggtctgaaac agtcgtttgc ccgacaagat tacgacacag ccgcacaaca agtccgccaa
    10681 ggcaggtttc tcgacaaact ccgcaacgaa atttcctcgg cattataatc cgcaccgtgt
    10741 ttcagacggc gtaaccgccg caccgttccg cgtcaaaata tgctaaaata agcaacaatt
    10801 ttttgccata cgaaacattg aaaccatgac cgacgcaacc atccgccacg accacaaatt
    10861 cgccctcgaa accctgccgg taagccttga agacgaaatg cgcaaaagct atctcgacta
    10921 cgccatgagc gtcattgtcg ggcgcgcgct gccggacgtt cgcgacggtc tcaagccggt
    10981 acaccgccgc gtactgtacg cgatgcacga attgaaaaac aactggaatg ccgcctacaa
    11041 aaaatcggcg cgcattgtcg gcgacgtcat cggtaaatac cacccccacg gcgataccgc
    11101 cgtatacgac accatcgtcc gtatggcgca aaatttcgct atgcgttatg tgctgataga
    11161 cggacagggc aacttcggat cggtggacgg gcttgccgcc gcagccatgc gctacaccga
    11221 aatccgcatg gcgaaaattt cccacgaaat gctggcagac attgaggaag aaaccgtcaa
    11281 tttcggcccg aactacgacg gtagcgaaca cgagccgctt gtactgccga cccgtttccc
    11341 cacactgctc gtcaacggct cgtccggcat cgccgtcggc atggcgacca atatcccgcc
    11401 gcacaacctt tccgataccg tcaatgcctg cctgcgcctg ctcgatgcac ccgacaccga
    11461 aatcgacgaa ctgatcgaca ttatccaagc ccccgacttc ccgaccgggg caaccatcta
    11521 cggcttgagc ggcgtgcgcg aaggctataa aacaggccgc ggccgcgtcg ttatgcgcgg
    11581 taagacccat atcgaaccca taggcagaaa cggcgaacgc gaagccatcg ttatcgacga
    11641 aatcccctat caggtcaaca aagccaagct ggtcgagaaa atcggcgatt tggttcggga
    11701 aaaaacactg gaaggcattt ccgagctccg cgacgaatcc gacaaatccg gtatgcgcgt
    11761 cgttatcgag ctgaaacgca acgaaaatgc cgaagtcgtc ttaaaccaac tctacaaact
    11821 gactccgctg caagacagtt tcggcatcaa tatggtggtt ttggtcgacg gacaaccgcg
    11881 cctgttgaac ctgaaacaga ttctctccga attcctgcgc caccgccgcg aagtcgttac
    11941 ccgacgtacg cttttccggc tgaagaaggc acgccatgaa gggcatatcg ccgaaggcaa
    12001 agcggtcgca ctgtccaata tcgatgaaat catccggctt atcaaagaat cgcccaacgc
    12061 ggtcgaggcc aaagacaaac tgcttgcgca cccttggcgc agtagcctcg ttgaagaaat
    12121 gctgacgcgt tccggtctgg atttggaaat gatgcgtccg gaaggattgg ctgcaaacat
    12181 cggcttgaaa gagcaaggtt attacctgag cgagattcag gcagatgcta ttttacgcat
    12241 gagcctgcga aacctgaccg gcctcgatca agaagaaatt gtcgaaagct acaaaaacct
    12301 gatgggtaaa atcatcgact ttgtagatat cctctccaaa cccgaacgca ttacccaaat
    12361 catccgcgac gaactggaag aaatcaaaac caactatggc gacgaacgcc gcagcgaaat
    12421 caacccgttc ggtggcgaca ttgccgatga agacctgatt ccgcaacgcg aaatggtcgt
    12481 taccctgaca catggcggct atatcaaaac ccagccgacc accgactatc aggcgcagcg
    12541 tcgcggcggg cgcggcaaac aggcggctgc caccaaagac gaagacttta tcgaaaccct
    12601 gtttgttgcc aacacgcatg attatttgat gtgctttacc aatttgggca agtgtcattg
    12661 gattaaggtt tacaaactgc ccgaaggcgg acgcaacagc cgcggccgtc cgattaacaa
    12721 cgtcatccag ttggaagaag gcgaaaaagt cagcgcgatt ctggcagtac gcgagttccc
    12781 cgaagaccaa tacgtcttct tcgccaccgc gcagggaatg gtgaaaaaag tccaactttc
    12841 cgcctttaaa aacgtccgcg cccaaggcat taaagccatc gcgctcaaag aaggcgacta
    12901 cctcgtcggc gctgcgcaaa caggcggtgc ggacgacatc atgctgttct ccaacttagg
    12961 taaagccatc cgcttcaacg aatactggga aaaatccggc aacgacgaag cggaagatgc
    13021 cgacatcgaa accgaaattt cagacggcat cgaagatgaa accgccgaca gcgaaaacgc
    13081 actgccgagc ggcaaacacg gtgttcgccc gtccggtcgc ggcagcggcg gtttgcgcgg
    13141 tatgcgcctg cctgccgacg gcaaaatcgt cagcctgatt accttcgccc ctgaaaccga
    13201 agaaagcggt ttgcaagttt taaccgccac cgccaacgga tacggaaaac gcaccccgat
    13261 tgccgattac agccgcaaaa acaaaggcgg gcaaggcaat attgccatta acaccggcga
    13321 gcgaaacggc gatttggtcg ccgcaacctt ggtcggcgaa accgacgatt tgatgctgat
    13381 taccagcggc ggcgtactta tccgcaccaa agtcgaacaa atccgcgaaa ccggccgcgc
    13441 cgcagcaggc gtgaaactga ttaacttgga cgaaggcgaa accttggtat cgctggaacg
    13501 tgttgccgaa gacgaatccg aactctccga cgcttctgta atttccaatg taaccgaacc
    13561 ggaagtcgag aactgaaaat catctcccga tgccgtctga agattcagac ggcatttatt
    13621 ttatccctca tccgtcatcc ggcttctcac aatatagcgg attatagtca attaaaaaca
    13681 aggggctgtc ctagataact agggaaattc aaattaagtt agagttgccc ctatgagaaa
    13741 aagtcgtcta agccggtata aacaaataaa ctcattgaac tgtttgtcgc aggtgtaact
    13801 gcaagaacga cagcagagtt agtaggcgtt aataaaagta ccgcagccta ttattttcat
    13861 cgtttacgat tacttattta tcaaaacagt ccgcatttgg aaatgtttga tggcgaagta
    13921 gaagcagatg aaagttattt tgctgaacga caaaaccata ttaatggaat tgagaacttt
    13981 tggaaccggg caaaacatca tttacgcaag tttgacggca ttcccaaagc gcattttgag
    14041 ctgtatttaa aggggtacga acggcgtttt aacaacagtg agataaaagt tcaaatttcc
    14101 attttaaaac aattagtaaa atcgagttta tcctag
//
LOCUS       DAXHNP010000038        13791 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.038, whole genome shotgun sequence.
ACCESSION   DAXHNP010000038 DAXHNP010000000
VERSION     DAXHNP010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13791
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.038"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(221..2971)
                     /gene="tbpA"
                     /locus_tag="ACFM5C_000832"
     CDS             complement(221..2971)
                     /gene="tbpA"
                     /locus_tag="ACFM5C_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein TbpA"
                     /protein_id="HFC6068574.1"
                     /translation="MQQQHLFRLNILCLSLMTALPVYAENVQAGQAQEKQLDTIQVKA
                     KKQKTRRDNEVTGLGKLVKTADTLSKEQVLDIRDLTRYDPGIAVVEQGRGASSGYSIR
                     GMDKNRVSLTVDGLAQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSV
                     EQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEA
                     LLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDTNQYAHFVVEEECPNGYAACKDKPK
                     KDIVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHTQ
                     QTFDTRDMTVPAFLTKAVFDANKKQAGSLSGNGKYAGNHKYGGLFTNGENGALVGAEY
                     GTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGIGLDNHFQQTHCSADGS
                     DKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGSN
                     LRHQDYYFQNAKRAYSLKTPPQSGNGGSNANPNGSQGKPYWVSIGGGNVVTGQICRLG
                     NNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRT
                     LSWNAGIVLKPADWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEAG
                     IVFKGDFGNLEASWFNNAYRDLIVRGYEAQIQNGKETAKGDPAYLNAQSARITGINIL
                     GKIDWNGVWDKLPEGWYSTFAYNRVHVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGY
                     DQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYT
                     IKKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEM
                     KF"
     gene            complement(3058..5193)
                     /locus_tag="ACFM5C_000833"
     CDS             complement(3058..5193)
                     /locus_tag="ACFM5C_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6068575.1"
                     /translation="MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVDTEAPRPAPKY
                     QDVSSEKPQARKDQGGYGFAMRLKRRNWYPQAKEDEVKLDESDWETTGLPTEPKELPK
                     RQESVIEKVETDSDSNIYSSPYLTPSNHQNGNTGNGINQPKNQATGHENFQYVYSGWF
                     YKHAKSEIKRENGSVSAKRGDDGYIFYHGNKPSRQLPASGKITYKGVWHFVTDTKRGQ
                     TFREIIQPSKNQGDRYSGFSGDDDEQYSNKNDMLKGDQEGYGFTSNLEVDFNNKKLTG
                     KLIRNNRVTGATNDKYTTQYYSLEAQVTGNRFNGKATATDKPKNDDETKEHPFVSDSS
                     SLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKAESGGGNGASGGTDAAASNGAA
                     GTSSENSKLTTVLDAVELKSGGKEVKNLDNFSNAAQLVVDGIMIPLLPKDSESGNTQA
                     DKGKNGGTKFTRKFEHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCS
                     NLNYLKYGMLTRKNSKSAMQAGENGSQADAKTEQVEQSMFLQGERTDAKEIPKEQQDI
                     VYRGSWYGHIAGSTSWSGNASNATSGNRAEFTVNFDTKKINGKLTAENRQEATFTIEG
                     TIQDNGFEGTAKTADLGFDLDQSNTTGTPKAYITNAKVQGGFYGPKAEELGGWFAYPG
                     DKQTKNATNASGNSSATVVFGAKRQQPVR"
     gene            complement(6629..7441)
                     /gene="murI"
                     /locus_tag="ACFM5C_000834"
     CDS             complement(6629..7441)
                     /gene="murI"
                     /locus_tag="ACFM5C_000834"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFC6068576.1"
                     /translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
                     PYGTKSKATIENFSMQIVDFLLEHDVKAMVVACNTIAAVAGQKIRQKTGNMPVLDVIS
                     AGAKAALATTRNNKIGIIATNTTVNSNAYARAIHRSNPDTLVRTQAAPLLVPLVEEGW
                     LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAGNVALVDSAITTAEE
                     TARVLAQEGLLNTDDNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
     gene            7643..8104
                     /gene="tsaE"
                     /locus_tag="ACFM5C_000835"
     CDS             7643..8104
                     /gene="tsaE"
                     /locus_tag="ACFM5C_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFC6068577.1"
                     /translation="MSDLPSISRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
                     TTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEEWEDAGLDELF
                     AANSVCLIEWPQQGGEFTPPADITATLTHDGGGRKCLLTAHTERGSESLPL"
     gene            8101..9351
                     /locus_tag="ACFM5C_000836"
     CDS             8101..9351
                     /locus_tag="ACFM5C_000836"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6068578.1"
                     /translation="MIKLTRRQIIRRTAGTLFALSPIASAVAKTVRVPQFTAARIWPS
                     HTYTRLTLESTAALKYQHFALDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRSIR
                     AGQNTPDTVRLVIDLKQPSYAQVFSLPPVGGFKNRLVVDLYPQGMDADDPMMALLNGS
                     LNKTRRGSPEADLAQNTPAQTERGKNGRRPVIMIDPGHGGEDPGAVSPGGLQEKHVVL
                     SIARETKKQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
                     GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
                     KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
                     RRQCAQSIASGVQRYLNTSVLKRG"
     gene            complement(9409..10551)
                     /locus_tag="ACFM5C_000837"
     CDS             complement(9409..10551)
                     /locus_tag="ACFM5C_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HFC6068579.1"
                     /translation="MNTLYTLFATCPRGLETVLSQELESLGCTDVQVFDGGVSCRGGL
                     EQVYAANLHSRTASRILLRLTKGTYRNERNIYKLAKNINWFNWFTLQQTFKVKVEAKR
                     ANVKSIQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLDERNVEIFIDTSGE
                     ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
                     PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQVKPAFAPISGSDSDRRIIQTALANARSA
                     GVDDIVSFSVADAQSVRPNGVGGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKYYAG
                     WLAAMFTGDREMPKFMRLSPKRKIPLYNGNLDCRLFLIDMVEGSNR"
     gene            complement(10600..11022)
                     /locus_tag="ACFM5C_000838"
     CDS             complement(10600..11022)
                     /locus_tag="ACFM5C_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068580.1"
                     /translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
                     GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
                     GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
     gene            complement(11015..11824)
                     /locus_tag="ACFM5C_000839"
     CDS             complement(11015..11824)
                     /locus_tag="ACFM5C_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6068581.1"
                     /translation="MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGK
                     VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPDQWTGEPQ
                     SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
                     LGSAEGSGANVLMEAAQWQDRPEYAGSVWMMVQTREQWRQAQEKGADVVVWRVGNAAQ
                     AAAVDEVLKHGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
     gene            complement(11906..12283)
                     /gene="acpS"
                     /locus_tag="ACFM5C_000840"
     CDS             complement(11906..12283)
                     /gene="acpS"
                     /locus_tag="ACFM5C_000840"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFC6068582.1"
                     /translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
                     PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
                     ISRVSLSMSDEEDTVLAFVVAEK"
     gene            complement(12483..13250)
                     /locus_tag="ACFM5C_000841"
     CDS             complement(12483..13250)
                     /locus_tag="ACFM5C_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6068583.1"
                     /translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFIMPLSKVVAL
                     VALPSLLMSLLVLCSNNKKGFWQEIVYYLKTYKLLAIGSVVGSILGVKLLLILPVSWL
                     LLLMAIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLI
                     FLLSETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLSVLSVIGLY
                     VGIRLRTKISPNFFKMLIFIVLLVLALKIGHSGLIKL"
     gene            complement(13260..>13791)
                     /locus_tag="ACFM5C_000842"
     CDS             complement(13260..>13791)
                     /locus_tag="ACFM5C_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HFC6068584.1"
                     /translation="DITFSEDVGECPLHSDSSFSENPESYLVMYVVKSANDGGNSLFL
                     SSSDIVNQLSKTETGKKHLKTLTGNLYPFKTPASFDKKQGVRWGNILSVNTQMIRFRS
                     DCIYKGIEENRNKVSKEMVLALDYLVNVIKNASDIQEFSAQDDGLIIIDNVNGLHART
                     DYTDKNRHYIRARITV"
BASE COUNT         3113 a         3678 c         3407 g         3593 t
ORIGIN      
        1 atttgaggtt tctgtttttg attttccgcc ttcgcgggaa tgacggttta gaagttaccc
       61 gaaacctcaa aaaaaccgaa accgaacgga ctggattccc gcctgcgcgg gaatgacggg
      121 tttcgagatt acggtgtatc ggggatgatg gaaaatggcg ggaattgtgt aaaaaatgcc
      181 gtctgaagcc tttcagacgg catttgcggc gtttggacgt ttaaaacttc atttccaagc
      241 taaatgtgta gtttcggccg ggggcggcat atcggttgta aacgccgaca tttttgtgtt
      301 ggttgactgc gccgccggca gtttgccgca cattttccca agtaacatag cggtagttga
      361 ggaggttgta cacgcccgca cggagggtga agtgtttttt aatcgtgtaa taaccggaca
      421 cgtccacaat ataccaaggg cgggtacggc gcgcggtggc ttttgtattg cggctgttgc
      481 cgttgagcaa agcccggctg cccaacaact ctgtgatttc cttggctttg gaataagtca
      541 gcataccgtt cacaccccat ttgccttccg gttggtcata gcccaagccg acgacatagc
      601 gcgagggttg gatggcatca aacaggtgtg attgaatatc ggtgcggtct gcgcgttttt
      661 tgatgtcgcg gacatggaca cgattatagg caaatgtaga ataccaacct tcgggcaatt
      721 tatcccatac gccgttccaa tcgattttgc ccaaaatatt gatgccggta atccgcgcgc
      781 tttgggcatt gaggtaagcc gggtcgcctt tggctgtttc tttgccgttt tgaatttgcg
      841 cttcataacc ccggacaatc aaatcgcggt aggcattgtt gaaccaactt gcctccaagt
      901 tgccgaaatc gcctttaaac acgatgccgg cttctttgtt gaacgatttt tccggatcga
      961 ttttgaccgc cttgctttga acacccgccc gccagccgta catttccgca aacgagggca
     1021 ggcggaagcc ggttgaagtg cggtaagtca aatccagcca gtcggcaggt ttgaggacga
     1081 tgcctgcgtt ccaggacagg gtacggtgcg tgccggtgga aacgctgccg tcgtccgaat
     1141 gcgtgctgcg gtagtcgtag cgcaagcccg cgccgacatc cgcccacctg cccaaacgga
     1201 cattgtcccg aactgccgcg taatagcttt tgccgttgat gctgcgcggc gtgcagtccg
     1261 tataagtatt attgcccaag cggcagattt gccccgtaac cacatttccc ccgcctatgc
     1321 tgacccaata gggtttgcct tggctgccgt tggggttggc gtttgagccg ccgttgccgc
     1381 tttgaggggg cgttttcaac gaataggcgc gtttggcgtt ttgaaaataa taatcctgat
     1441 ggcggagatt agagccaaag cggtcaaacc cgagattcac gctcaggttg tggcggattt
     1501 tggcggtatc gaaggatttt ttgaatgccg cctgcaagag cctgtggctt tccccgtaaa
     1561 tcacgcggtc ggatttgtaa taggaaaacg gcttgtcggc actcgggcgg caatatttgt
     1621 ccgaaccgtc ggcagaacag tgcgtctgct gaaaatgatt gtccaaaccg atgccctgcc
     1681 ggtcgtaaga gaggcgggca taatctgccc aagtgtcttt atcggcattg gtatagacat
     1741 attccaaacc gtagcggctt ttggtgtgcg tctcgtcgta aaacacgccc gtaccgtatt
     1801 ccgcgcccac cagcgcaccg ttttcgccgt tggtaaacag tccgccgtat ttgtggttgc
     1861 ccgcgtattt gccgttgccg gacaaagaac ccgcctgttt tttatttgca tcaaaaaccg
     1921 ccttggtcag gaatgccgga accgtcatat cgcgcgtgtc gaaagtttgt tgcgtgtgtt
     1981 cgagtatgcc gccgatgtag tgccgtttgt tttcaaaacg aaaacccggg cggaacagcc
     2041 acgatcggct ttcgtatgaa agcggatcgg caaggaagcg gttgggaccc gtgtagtctc
     2101 gggtggaaac cgtttgacgt tcgtctttgc cgacaatatc ttttttcggt ttgtctttac
     2161 aagccgcata tccattaggg cattcttctt cgaccacgaa atgagcgtac tgattggtat
     2221 cctcaaccgg caccagcctg ttaaagctct gaacgccgcg tccggcatct tcgtgtgcgc
     2281 ggatttcccc cgcgcgccgc ccggtgtgga tcagcaaagc ctccgcaccg ccgatgcgcc
     2341 ccgccagcgc gatggattgg gtaagccccc ggtttttgcc ggaataggcg gttttactct
     2401 gaatccccca ctgcctgcct tccccgataa catcgtcggc ggttttggtt tgaaatgcga
     2461 ccgaacccgc caatgcgccg ctgccttgtt cgaccgagtt tgagcctttg ctgatttcga
     2521 cagctttgac gttttcatac tcgatttcat tgattgcgcc gctgctgccc gccgtcctcg
     2581 tcccgcccaa tgccgcctgc gcggtgtagg actgtatttg cgccaagccg tctaccgtca
     2641 aggaaacgcg gtttttgtcc ataccgcgta tcgagtagcc cgagcttgcg ccgcgcccct
     2701 gttcgacaac ggcgatgccg gggtcgtaac gcgtcaggtc gcggatatcg agtacctgtt
     2761 ccttgctgag ggtgtcggcg gttttgacca atttgcccaa accggttact tcgttatcgc
     2821 ggcgggtttt ctgttttttg gcttttacct gtatggtatc caactgtttt tcctgtgctt
     2881 gtccggcttg cacattttct gcataaacgg gcagcgcggt catcagcgac aggcataaaa
     2941 tatttaatcg gaacaaatgt tgctgttgca taatgtttcc ctaatcttcg ctttcagacg
     3001 gtatcggaag gagcggtgcc gtctgaagcc ttattcttga ttgttcggca accgtgctta
     3061 tcgcacaggc tgttggcgtt tcgcaccgaa tacgactgtt gcactgctat tgccggatgc
     3121 atttgttgca tttttcgttt gtttatcgcc cggataggca aaccatccgc ccaactcttc
     3181 ggctttaggc ccgtaaaaac cgccctgcac cttggcgttt gtgatatatg ccttaggcgt
     3241 gccggtggta ttgctttgat cgagatcaaa acctaagtca gcagtttttg ccgtaccttc
     3301 aaagccgttg tcctgaatcg ttccctcaat ggtaaaggtt gcctcctgcc tgttttcagc
     3361 ggttaacttg ccgttaattt ttttcgtatc gaaattcaca gtaaattccg ccctgttgcc
     3421 actcgttgca ttggaagcat tgccgctcca gcttgtgctg ccggcgatat gcccgtacca
     3481 agacccccga taaacgatgt cttgttgctc ttttggaatc tcttttgcat cggtgcgctc
     3541 gccttggagg aacatacttt gttcaacttg ttccgtttta gcgtcagctt gactaccgtt
     3601 ttcgcctgcc tgcatcgcgg acttgctgtt tttacgcgtc aacattccgt atttcagata
     3661 attgaggttg gaacagcata cttcgacttc ataggttttt gttttgccat tggtatcacc
     3721 tgccgtattt gaagcggttt gcgccccatt cgtctgcgta cctgcttggg cgtctttttt
     3781 atcactttcc ggcgtgtgtt caaatttgcg ggtaaatttt gttccgccgt ttttaccttt
     3841 atctgcctga gtgttcccgc tttcggaatc cttgggcagg agcggaatca taatgccgtc
     3901 gacaaccagt tgggcggcgt tgctgaagtt gtcgagattt ttgacttcct taccgccaga
     3961 tttcagctca accgcatcca aaaccgtggt cagcttactg ttttcagacg acgtgcctgc
     4021 cgcaccgttt gatgctgccg catctgtgcc gcctgaagca ccgttaccgc ccccactttc
     4081 ggctttatct ttggttttcg cgctgccgac aacggcaact ttttgatcgt cgctcaaaaa
     4141 gcggaaaccc aattcctcac cctgcgggcc gaaaaagccg ccgctcaaag aagacgagtc
     4201 ggaaacaaag ggatgttcct tggtttcgtc gtcgtttttg ggtttgtcag ttgccgttgc
     4261 cttgccgttg aagcggttgc ctgttacttg agcctcaagg ctataatatt gcgtggtgta
     4321 tttatcgtta gtagcgcctg taactctatt attgcgtatc aatttacccg tcaatttttt
     4381 attattgaaa tccacttcta aatttgaggt aaaaccataa ccctcttgat cacctttcag
     4441 catgtcgttt ttattagaat attgttcatc atcatcgcca gaaaatccgc tatacctgtc
     4501 gccttgattt tttgaaggtt ggataatttc acgaaatgtt tgaccccttt ttgtatcggt
     4561 cacaaaatgc cacacacctt tataggtaat ttttccagaa gcgggaagtt gtcgggaagg
     4621 tttgttgccg tgataaaaga tatagccgtc gtcgcctctt tttgcactta ctgatccgtt
     4681 ttctcttttg atttcgcttt tcgcgtgttt ataaaaccaa ccggaataaa catattggaa
     4741 attttcgtga cctgttgcct gatttttagg ttggtttata ccgttgccag tgttgccgtt
     4801 ttgatggttt gatggtgtga gataggggga agaataaata ttgctgtcgc tgtctgtttc
     4861 tactttttca ataaccgatt cttgccgttt agggagttcc ttgggttctg tcggcaatcc
     4921 tgtcgtctcc caatcactct cgtccagttt aacctcgtct tcttttgcct gcggatacca
     4981 attcctccgt ttcaacctca tcgcaaaacc gtatccgcct tggtcttttc gggcttgcgg
     5041 tttttcggaa gaaacatctt gatactttgg cgcgggacgc ggggcttcgg tatcgacaga
     5101 atcaagatcg aaactgccgc ctccgcccaa acaagcactc aacaaaaaca caggcagcac
     5161 catagcagcc tgatttacca atggattgtt cataataaat ccaattcaat taaagaatga
     5221 taaggattat tattttattt atttttaaca aatttgcaaa tactttttta tttttttagg
     5281 gaatacacca aaatcccgtc attcccacgc tgcttttaaa accgcctgca accgcaaaat
     5341 ctgccgcaat ctgctccctc ccccgtgggg gaggtctgcc gcaatccgct ccctcccctg
     5401 cgggggaggg ccgaggagag ggcattttcc aagttgcggc aacctttccc aaatccctta
     5461 gtcttctaaa atacaagcct tacggcttgt tgccctctct ctaactctct cccgcaggga
     5521 gagaggacgg ggcggctgtt ggaattaagg gttttgtaaa ctaatcagct tgtgcaggct
     5581 gctttttgct tttcagatga cctgcaatca acggctgtaa atccaagttg cttttcaaac
     5641 cgcctgcaac tgcaaaatct gccgcaatcc gctccctccc ctgcggggga gggctgggga
     5701 gagggcattt tccaaatcgc ggcaatcttt cccaaatccc ttagtcttct aaaatacaaa
     5761 ccttgcggct tgctgccctc tctctggctc tctcccgcag ggagagagga ctatgatgcc
     5821 cgccggcggc atcgcgcctt gcgaaaccat aaaatacccg aatcgtcatt cccgcgcagg
     5881 cgggaatcta ggacgtagaa tctcaagaaa ccgttttatc cgataagttt ctgtgccgaa
     5941 gggtctggat tcccgctttc gcgggaacga cggcgcataa gtttccgcgt gggcaaatcc
     6001 ggattcctgt ctgtgtggga atgacgaatc catccgcacg gaaacctgca ctccgttatt
     6061 cccgcccctt cgccattctc actccttcgt cattcccacg aaagtgggaa tctagaaact
     6121 taacgctacg gcaatttttg gaaatggctg aaaccgaacg gtctagattc ccgcctgcgc
     6181 gggaatgacg ggattttagg tttctgtttt tgattttctg tttttcgcgg gaatgacggg
     6241 cttcaggatt acggtattgt tgagagggat gggaaacggt gaaaattgtg taaaaaatgc
     6301 catctgaagc ctttcagacg gcatttgcgg cgttcggacg tttaaaactt cattaaccgc
     6361 gcaggaggga atccgaacac atccgcacgg aaacctatat cccgtcattc ccacggaagt
     6421 gggaatctag aacgcagggt tgaagaaacc gttttatctg ataagtttcc gcaccgacag
     6481 gtctggattc ccgcctgcgc gggaatgacg gtttagaagc tacccaaaac ctcaaaaaaa
     6541 accgaaaccg aacggtccgg attcccgcct gcgcgggaat gacgggattt tgggtttctg
     6601 taatctcggg cagctttccg tcatcgtttt aacccaaaga caccatttca atctgctcca
     6661 ttgtcctgcc cagaaaacgc tcgcctatcg ttctgaattt caaaggaata tcgctgacat
     6721 aaaaacgata gtcgggatta ttgtcgtcgg tattgagcaa tccttcctgc gcaaggacgc
     6781 gtgcggtttc ttcagccgtc gtaattgcag aatcaaccaa cgcgacattg cccgcctccc
     6841 tgccgattaa cggtttgagc aagggaaagt gcgtgcagcc caataccagc gtatcgatgc
     6901 cgtctgcaag cagtggtttg aggtattcgc atacggtcag gcgggtaact tcgtgttcca
     6961 accaaccttc ctccaccaaa gggacgagca gcggcgcggc ctgcgtgcgg acgagcgtgt
     7021 cggggttgct cctatggatg gcgcgcgcat aggcgttgct gttgactgtg gtattggtgg
     7081 cgataatgcc gattttgttg ttgcgcgtcg ttgccagcgc ggctttcgcg ccggcggaaa
     7141 tcacgtccaa cacgggcata ttgcctgtct tttgacggat tttctgcccc gctaccgccg
     7201 caatggtatt acacgcgaca accatcgctt tgacatcgtg ttccaataaa aaatcaacta
     7261 tttgcataga aaaattttca atggtcgctt tggattttgt cccataaggc acacgcgccg
     7321 tgtcgccgaa ataaatgatg ttttccatcg gcagccgctc catcagcgcg cgcacattgg
     7381 tcaaaccgcc gattcccgag tcaaaaacgc cgatgggtcg ctgcctgccg atattttcca
     7441 tcctttttcc aatccgtccc aaacatacaa tccgcgtatt gtacacgcgc cgctttttct
     7501 tgacagccgt tgccgtctga aagcagaacg cggatttggc tgttataatg ctcggacaag
     7561 aagcatccgc ccctcgggtg caaagtttgc aaaacctgca aaactgccca taatacccta
     7621 gaccttacaa caaaccgttt ccatgtctga tttaccctct atctcccgat tccttgccga
     7681 cgaagccgcc acactcgatt tgggcgcggc gtggtcttcc cgtttaaacg cgccgctggt
     7741 catttatctc gagggggatt tgggtgcggg taaaaccacg ctgacacgcg gcatcctgcg
     7801 cggattgggt catcagggcg cagtcaaaag cccgacttac gccatcgtcg aatcttatcc
     7861 gctggaacgc ttcaccttgc accatttcga cctctaccgc ttctcgttcc ccgaagaatg
     7921 ggaagatgcg gggcttgacg aactgtttgc cgcaaacagc gtctgcctga tcgaatggcc
     7981 gcaacagggt ggggaattta cgccgcccgc cgacatcacc gcaacattga cacacgacgg
     8041 cggcggcaga aaatgcctgc tgaccgccca taccgaacga ggaagcgaaa gcctgccgct
     8101 atgatcaaac tgacacgaag acaaatcatc cgccgcaccg ccggcacact gttcgcccta
     8161 agccccatcg catccgccgt tgccaaaacg gtacgcgtac cacaattcac cgccgcacgg
     8221 atatggccgt cccacaccta cacccgcctg acgctcgaaa gcaccgccgc gctcaaatac
     8281 cagcacttcg cgctcgacaa tccgggcagg ctggtcgtcg atatacaaaa cgcgaacatc
     8341 aataccgtat tgcacggact gtctcagaag gttatggcgg acgacccctt tatccgcagc
     8401 atacgcgccg gtcagaacac gcccgacacc gtccgcctcg tcatcgattt gaaacagcct
     8461 tcctacgcgc aagttttttc cctcccaccc gtcggcggct ttaaaaaccg cctcgtcgtc
     8521 gatctctatc cgcaagggat ggatgccgac gatccgatga tggcgctgct taacggcagc
     8581 ctgaacaaaa cccgtcgcgg ctcccctgaa gccgacctcg ctcaaaacac tcccgcacaa
     8641 accgaacgcg gcaaaaacgg gcgcagaccc gtcattatga tcgaccccgg acacggcggc
     8701 gaagaccccg gcgccgtcag cccgggcggt ttgcaggaaa aacacgtcgt cctctccatc
     8761 gcccgcgaaa ccaaaaaaca attggaagcc ttgggttaca acgtctttat gacgcgcaac
     8821 gaagacgtgt tcatcccttt gggcgtgcgt gtcgccaaag ggcgcgcacg gcgggcggac
     8881 gtatttgtct ccatccacgc cgatgccttc accagcccct ccgcgcgcgg aacgggggtc
     8941 tatatgttga acaccaaagg cgcgaccagc tccgccgcca aattcttgga acaaacccaa
     9001 aacaatgccg acgcggtcgg cggcgtaccg accagcggca accgcaacgt cgataccgcc
     9061 ctgctcgaca tgacccaaac cgccacgctg cgtgacagcc gcaaactcgg caaactggtg
     9121 cttgaagaat tgggcaggct caaccacttg cacaaaggca gggtggacga agccaatttc
     9181 gccgttttgc gcgcacccga tatgccgtct atcctggtcg aaaccgcctt cctgtccaat
     9241 cctgccgaag agaagctgct gggcagcgaa tccttccgcc ggcagtgcgc ccaatccatc
     9301 gcctcgggtg tccaacgcta cctcaataca tccgtattga agcggggttg attccgaaaa
     9361 ataaatgccg tctgaacatt tttcagacgg catttttgta cactttcctc aacggttcga
     9421 tccttccacc atatcaatca ggaacaggcg gcaatcgagg ttgccgttat aaagcggaat
     9481 tttgcgtttt ggcgacaggc gcatgaattt gggcatttcc cgatctccgg taaacattgc
     9541 cgccaaccag cctgcgtaat atttcttcaa ccacgtcccc aactgcggat aaagcgcctg
     9601 caaggcgcgg acttcctcaa ggcgcacgcc gtagggcgga ttggacacca taatgccgcc
     9661 cacgccgttc ggacggacgg attgcgcgtc ggcaacgctg aaggaaacga tgtcgtccac
     9721 cccggcactg cgtgcgttgg ccaatgccgt ctgaatgatg cggcggtcgc tgtcgctgcc
     9781 cgaaatcggt gcaaaagccg gtttaacctg cgcttcggca cggcggcgca aatccgacca
     9841 cagcgtttta tcgaaatttt gcagtttttc aaaaccgaaa cggcgcatca tacccggcgc
     9901 gcggcgggcg gcaatccaag cggcttcgat agcaatcgtg ccgctgccgc aaaacgggtc
     9961 ttgaaacggc tgcgtgccgt cgtagcctgc cgagagcagc aatccggcgg caaggttttc
    10021 gcgcagcggg gcttcgccgg tatcgagacg gtagccgcgt ttgaacaggg cttcgcccga
    10081 agtgtcgatg aagatttcga cattgcgttc gtccaaaaag gcgtggatgc gaacatcggg
    10141 cgcggctttg tccacgctcg gacgtgcgtc gtaaatgtcg cggaaagcgt cgcagacggc
    10201 atctttgacg gtcagtccga caaattggat gctcttaacg ttggcacgct ttgcctcgac
    10261 tttgactttg aacgtctgct gtaaagtaaa ccaattaaac cagttgatat ttttggcgag
    10321 tttgtagatg ttgcgctcat tgcggtatgt ccctttggtc aggcgcagca ggatacggct
    10381 ggcagtacgc gaatgcaggt tggcggcgta aacctgttcc aatccgcccc ggcaggaaac
    10441 gccgccgtca aacacttgta catcggtaca gccgaggctt tcgagttctt gagataaaac
    10501 ggtctccaag ccgcgcgggc aggtggcgaa aagtgtatat aaagtattca taacgtgtcc
    10561 tttccggacg gatgttccgg caatggcgga ttgaaaggtt tattcggcgg taaatgccgt
    10621 ctgaaatgtc cggctgccga ttgtaatgtc cgccgtaaaa tcgcgcctgc cttcgacaca
    10681 gatgggcagg cggatgcgta ctgcctgcca agtccccgac ggttgccgct cgaacatata
    10741 gcggttgaaa cccatatcca tatttttcat actgaagctg atgctgacct gttccgtgcc
    10801 ggcgggcgcg tgttcgatat aaatatcaaa cggttttttg gttgaaacgg cggcggcgcg
    10861 gacgcggctt ccgtccggca gcgtgcaacc ctcggtcaaa tcgcattgcg ccgccacagc
    10921 ttgcggctgc tgcgcctgcc accattgcaa caaaacgagc ttgacggcgg caaaggcaat
    10981 cagcagcagt gcggcaagca gtaatttacg gtttttattc atgattcttc cctattgttt
    11041 catcccttac caccacgtgc gcccccaatc cgagccatag ttttccataa cgtgcaaccg
    11101 tctgtccgtt tgctgcaagt acgagcggca cggatacgcc gtgcttcaac acttcgtcta
    11161 ccgctgcggc ttgtgcggca ttaccgactc gccagacgac cacatccgcg cccttttcct
    11221 gcgcctgccg ccattgttcg cgggtctgca ccatcatcca cacgctgccg gcgtattcgg
    11281 gtctgtcctg ccattgcgcc gcctccatca aaacgttcgc accgcttccc tctgccgaac
    11341 ccaaaggcag gacgcggtac gcgcccatac tgttttctcc gtgcaaaccc gttttcaggc
    11401 tgccgtacaa acggcgcggg acggacagcg aacgcaaaag cgcgccgttg gcgggcagca
    11461 tgggggcaac ggtaaaatca cccgccttct gccaagacca ttcctgccct tcgcgggatt
    11521 gcggttcgcc cgtccattgg tcggggttga cccataggaa tttcaggcag acgcgggcgt
    11581 gttcgtagga atggattttg gtcaaccaag gcgtggcggc gaggatgcgg atgccgagtt
    11641 cttcttcaaa ctcgcgttgc agggcttgga agtcggtttc gcccgcttcg accttgccgc
    11701 cggcaaattc ccaatatccg gcatagggtt tgccttcggg gcgcgagctg agcaggtagt
    11761 tgccgtctga atcgagcagg atgccggcaa cgacgcggat aagggggcgg gtgtcttgaa
    11821 tcatggcggg tacgcggttg gtcggtcgga gtgcaaatga gggatgggca atgccgtcaa
    11881 cgggttttcc gcatttcaga cggcattatt tttcggcaac gacaaacgcc aatacggtgt
    11941 cttcttcgtc gctcatgctg aggctgacac ggctgatgcc ttgttcctcc agccatttgg
    12001 acagggcggg gccgtagaaa aattcgggct tgcccaatgc gtcatgcccg atgccgatgt
    12061 tgcggaagga aaccgcgccg cgtatgcccg tgccgacggc tttggcgaag gcttctttgg
    12121 cggcaaagcg tttggcgagg tagttgacgg gtttgcccgc ttgcggaaat tcaagcagct
    12181 cttccggagt gaggatgcgc ccggcaaacg cctgtccgaa ttttttgttt aagcggatga
    12241 tgcgcttgag ggaaacaatg tctgtgccga tgccgtaaat catatttgcg ctccttcgcc
    12301 cttggttgcg ggtagtgatg aatgtgatga tgaatgccgt caatttcttg gggcgttaaa
    12361 atggcgtgaa tatccacttt tggggttttg tcggtaacaa ttttcactgt aaccttttgc
    12421 atttgaaatt ctaaaacatc gtgccaatta tttaataagg agttaaggca tttaataatg
    12481 aattaaagtt tgattaaacc cgaatgcccg attttcagag ccaataccaa taaaacaata
    12541 aaaattaaca ttttaaaaaa atttgggcta atcttagtcc ttaaccgaat tccaacatac
    12601 aatccaataa cagacaatac ggacagtaaa aatattaaac cgtattcact cttatttaat
    12661 aaccaatact ggtctcttag catatatatt tgaacaattt tcgccaaaag atagcataga
    12721 ttgcttgatt ttacgatacg atttttattt tctgtttcgc taagcaaaaa tattaacaat
    12781 atgggagaca tggcattggt tgaaccgccg atgatgcctg ccaaaaaccc aaaaagaacc
    12841 atattcttat tattggcaac tacttgaata ttttttgctt ttgcacatac atttaaaata
    12901 ccattgacag aataatacaa tgtaatgatt gccatcagta aaagcagcca agacactgga
    12961 agtatcaaaa gcaacttcac ccccaaaatg ctgccaacga cgctgccgat agcaagcaat
    13021 ttataggttt ttaaataata aacaatctct tgccaaaaac cctttttgtt attgctgcat
    13081 agaaccaaca agctcattaa caggcttggt aatgccacca aggcaacaac cttagacaat
    13141 ggcatgataa aagccaatgc ggttgtaccg agcatcggaa atcccatgcc tgtaattccg
    13201 tgcagtattg cggcagcaac aaaaacgata gattgcatta tttcttgcat aaccgtcctt
    13261 tatacagtaa ttcttgctct aatataatgc ctgtttttat ccgtataatc agttctggca
    13321 tgcaagccat tgacattgtc aataataatc aaaccatcat cttgtgcaga aaattcttga
    13381 atatcactcg cattttttat aacatttaca agataatcaa gtgcaagtac catttccttt
    13441 gatactttat ttctattttc ttcaatacct ttatagatac aatcacttct aaatctaatc
    13501 atttgagtat tgaccgataa gatattaccc catctcacac cttgtttttt atcaaatgat
    13561 gctggtgttt taaatggata taaattgccc gttaatgttt ttaagtgttt tttaccggtt
    13621 tctgttttag ataactgatt gacaatatct gatgaactta aaaataggga attacctcca
    13681 tcattggctg attttactac atacataacc aaataacttt ccgggttttc actaaaagat
    13741 gaatcactat gaagtggaca ttctccaaca tcttccgaga aagttatatc a
//
LOCUS       DAXHNP010000039        13757 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.039, whole genome shotgun sequence.
ACCESSION   DAXHNP010000039 DAXHNP010000000
VERSION     DAXHNP010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13757
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.039"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            383..5866
                     /gene="iga"
                     /locus_tag="ACFM5C_000843"
     CDS             383..5866
                     /gene="iga"
                     /locus_tag="ACFM5C_000843"
                     /EC_number="3.4.21.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgA-specific serine endopeptidase
                     autotransporter"
                     /protein_id="HFC6068585.1"
                     /translation="MKTKRFKINAISLSIFLAYALTPYSEAALVRDDVDYQIFRDFAE
                     NKGKFFVGATDLSVKNKQGQNIGNALSNVPMIDFSVADVNKRIATVVDPQYAVSVKHA
                     KAEVHTFYYGQYNGHNDVADKENEYRVVEQNNYEPHKAWGASNLGRLEDYNMARFNKF
                     VTEVAPIAPTDAGGGLDTYKDKNRFSSFVRVGAGRQLVYEKGAYHQEGNEKGYDLRDL
                     SQAYRYAIAGTPYKDINIDQTMNTEGLIGFGNHNTHYSAEELKQALSQDALTNYGVLG
                     DSGSPLFAFDKQKNQWVFLGTYDYWAGYGKKSWQEWNIYKKEFADKIKQRDNAGTIKG
                     NREHHWNITFGTNSKIGSTAVRLANNERDANNGQNVTFEDNGTLVLDQNINQGAGGLF
                     FKGDYTVKGANNDITWLGAGIDVADGKKVVWQVKNPNGDRLAKIGKGTLEINGTGVNQ
                     GQLKVGDGTVILNQQADADKKVQAFSQVGIVSGRGTLVLNSSNQINPDNLYFGFRGGR
                     LDANGNDLTFEHIRNVDEGARIVNHNTDRASTITLTGKSLITAPQNLSVYEIRNDYDD
                     DDYYGYYSYRKPIPQGKDLYYKNYRYYALKSGGSVNAPMPENGQTENNDWVFMGYKQE
                     EAQKNAMNHKNNQRISGFSGFFGEENGKGHNGALNLNFNGKSAQNRFLLTGGTNLNGK
                     ISVTQGNVLLSGRPTPHARDFVNKSSARKDAHFSKNNEVVFEDDWINRTFKATEIAVN
                     QSASFSSGRNVSNITANITATDNAKVNLGYKNGDEVCVRSDYTGYVTCNTDNLSDKAL
                     NSFGATQINGNVNLSQNAALVLGKAALWGQIQGQGNSSVSLNQHSKWHLTGDSQVHNL
                     SLADSHIHLNNASDAQSANKYHTLKINHLSGNGHFHYLTHLAKNLGDKVLVKESASGH
                     YQLHVQDKTGEPNQEGLNLFDASSVQDRSHLSVSLANNHVDLGALRYTIKTENGITRL
                     YNPYAENRRRVKPAPSPATNTASQAQKATQTDGAQIAKPQNIVVAPPSPQANQAEEAK
                     RQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK
                     EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAAELSAKQR
                     VGEEERRQTAQSQPQRRKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQAQAELVR
                     RQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERKAAELS
                     ANQKAAAEAQALAARQQKALARQQEEARKAAELAVKQKAETERKTAELAKQRAAAEAA
                     KRQQEARQTAELARRQEAERQAAELSAKQKAETDREAAESAKRKAEEEEHRQAAQSQP
                     QRRKRRAAPQDYMAASQNRPKRRGRRSTLPAPPSPSFDSSAYAAPRALHNPDWYENDY
                     EEIPLDALEDENVSESVDTSDKQPQDNTELHEKYENDYEEIPLDALEDEDVSESVDTS
                     DKQPQDNTELHEKVETVSLQPRAAQPRAQAATQPQAQAAAQADAVSTNTNSALSDAMA
                     STQSILLDTGASLTRHIAQKSRADAEKNSVWMSNIGYGRDYASAQYRRFSSKRTQTQI
                     GIDRSLSENMQIGGVLTYSDSQHTFDQASGKNTFVQANLYGKYYLNDAWYVAGDIGAG
                     SLRSRLQTQQKANFNRTSIQTGLTLGNTLKINQFEIVPSAGIRYSRLSSADYKLGNDS
                     VKVSSMSVKTLTAGLDFAYRFKVGNLTVKPLLSAAYFANYGKGGVNVGGNSFAYKADN
                     QQKYSAGAALLYRNVTLNVNGSITKGKQLEKQKSGQIKIQIRF"
     gene            complement(6044..7246)
                     /gene="trpB"
                     /locus_tag="ACFM5C_000844"
     CDS             complement(6044..7246)
                     /gene="trpB"
                     /locus_tag="ACFM5C_000844"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFC6068586.1"
                     /translation="MKNYHAPDEKGVFGEHGGLYVSETLIPALQELADAYKAAKNDPS
                     FWEEFHRDLKHYVGRPSPVYHAARLSEHLGGAQIWLKREDLNHTGAHKVNNTIGQALL
                     AKRMGKKRVIAETGAGQHGVASATVAARFGMTCDVYMGADDIQRQMPNVFRMKLLGAN
                     VVGVDSGSRTLKDAMNEAMREWVARVDDTFYIIGTAAGPAPYPEMVRDFQCVIGNEAK
                     EQMLEAIGRQPDVAVACVGGGSNAIGLFHPYIGEENVRLVGVEAGGLGVNTPDHAAPI
                     TSGSPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTVAK
                     DDEALEAFDLLCRFEGIIPALESSHAVAWAVKNAPKMGKDQVILVNLSGRGDKDINTV
                     AKLKGIKL"
     gene            complement(7431..8120)
                     /locus_tag="ACFM5C_000845"
     CDS             complement(7431..8120)
                     /locus_tag="ACFM5C_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6068587.1"
                     /translation="MLFEGLPCLAVWCKNRLSAVLPVGGLNVSENLLEIETHPFDSVL
                     PPKAAVMMMGTFPPKEDKRAMQFHYPNFQNDMWRVYGLVFFNDAAHFQRLSEKAFDAE
                     KIKAFLRERGIASCPTVLKAAREHGNASDKFLKVVETVDLAAVLAKIPECRHICTTGG
                     KATEILLDIQGGGIKMPKTGETVPFPFAGRDLTLTRLPSTSRAYPLSLAKKAAAYRAF
                     FEMAGLCEKQL"
     gene            8317..9096
                     /gene="rsmA"
                     /locus_tag="ACFM5C_000846"
     CDS             8317..9096
                     /gene="rsmA"
                     /locus_tag="ACFM5C_000846"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFC6068588.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLA
                     AITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVG
                     NLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDM
                     EMLIDVPPESFDPAPKVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNN
                     LKELAGDDDLQAVDINPQDRAEHIAPEKYVALSNYLAGKAV"
     gene            9269..9997
                     /locus_tag="ACFM5C_000847"
     CDS             9269..9997
                     /locus_tag="ACFM5C_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6068589.1"
                     /translation="MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLI
                     RTVNQLESIESGEIWVDGVNVADPKTDLNKIREEVGFVFQSFNLYPHLTVLENITLAP
                     MKVKGQNAEQAEKKAMELLERVGLAHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLF
                     DEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVLFVDKGQILEDE
                     TPEAFFTNPKHERAKQFLQQVMTH"
     gene            10070..10429
                     /locus_tag="ACFM5C_000848"
     CDS             10070..10429
                     /locus_tag="ACFM5C_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068590.1"
                     /translation="MYFVDRTAVVLKPTVRFLEWLKSTDENMPDLTIEQLRANCSVFL
                     VPQFDEPEAVVSYFDERYRQIFEAELAGWDIDKDKWPQDMGLKAFWEFFDIEIHDMVL
                     DMEEAELNITPVFDNMM"
     gene            10434..10874
                     /locus_tag="ACFM5C_000849"
     CDS             10434..10874
                     /locus_tag="ACFM5C_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HFC6068591.1"
                     /translation="MRAFQTALRPSRILNILTVSLHAASLAVCLTWFYGWMMWFGLAA
                     LVASYAYSLRITNLKHRHAITAITIDRDGQAEIVSGKDKTAATLAGSSMVTPYALFLQ
                     WDTGGTTVSQCIIPDMTDKESYRRLKVWILWRQPKKTAETDTPS"
     gene            10906..12180
                     /gene="folC"
                     /locus_tag="ACFM5C_000850"
     CDS             10906..12180
                     /gene="folC"
                     /locus_tag="ACFM5C_000850"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HFC6068592.1"
                     /translation="MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLTPQCPVVV
                     VAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAINAEPVSDDTIIASFER
                     IEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAVNAFDGDCAVVTSV
                     DLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLSHAEAIGAKLLMVQRDF
                     EFHALENIQWNYHFRPQHSDSPARNRNSLPFPALRGAYQLSNAACALTVLECLNDKLP
                     VDIGAIKRGLLLVENPGRFQVLPGRPLTVLDVGHNPHAARALRRSLINLAFAQKRTAV
                     FSMLSDKDIDGVLEIVKDQFDEWYIAPLDMPRGMTLESLQNKLHEHSIENIQTFAAVR
                     EAYRAAASKAGENDRIVVFGSFHTVADVMSVL"
     gene            12193..13191
                     /gene="ftsN"
                     /locus_tag="ACFM5C_000851"
     CDS             12193..13191
                     /gene="ftsN"
                     /locus_tag="ACFM5C_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6068593.1"
                     /translation="MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSS
                     GPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDLAGEDKPSAADSEISEPENVGAP
                     LVLINERLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAFEKP
                     KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKA
                     DKAESKKTAEKDRSDGKKHETAQKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSL
                     QRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE"
     gene            13184..13681
                     /locus_tag="ACFM5C_000852"
     CDS             13184..13681
                     /locus_tag="ACFM5C_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFC6068594.1"
                     /translation="MNSLPIADLLVSAVIAACIVISTMRGVITEAGSMAAWVVSFFFA
                     KLFAAPFADIAFASFQPRLFALALSFISLFVIACLIQKILRSLLTGAVSAVGLGFANR
                     ILGGVFGALKGILIITLLVMLASKTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGGTAE
                     TPEDD"
BASE COUNT         4000 a         3617 c         3317 g         2823 t
ORIGIN      
        1 cgcgtcattc ccacgaaccc acatcccgtt attaccacga aagcgggaat ctaggacgca
       61 gggttaagaa aacctacatc ccgtcattcc ctcaaaaaca gaaaaccaaa atcagaaacc
      121 taaaatcccg tcattcccgc acaagcggga atccaaaaac aaaaagccgc agaaatttaa
      181 cggaagaacc gaaccccgaa aatcggcttc ccaccttcgc ctgaataaca gaacaaagga
      241 agcggaaata aaaacatcgg gattcttttt ttaaattggc aataaaacac caaaatgaat
      301 gatttacaca acaaaaaata gtcaacacca ccaaaccggc gtaaaataca aaacattatc
      361 acccttaaaa cggtaaaacc ttatgaaaac caaacgtttt aaaattaacg ccatatcctt
      421 atccatcttt cttgcctatg cccttacgcc atactcagaa gcggcattgg tcagagacga
      481 tgtcgattat caaatattcc gtgactttgc agaaaacaaa ggcaaatttt ttgtcggcgc
      541 aaccgattta tcagtgaaaa acaaacaagg tcaaaacatc ggcaacgcat tatccaacgt
      601 accgatgatt gattttagcg ttgcagatgt caacaaacgc atagcaacgg tagtcgatcc
      661 ccaatatgct gtcagcgtca aacacgccaa agcagaagtc catacttttt attacggtca
      721 atacaacggt cataatgatg tagccgacaa agaaaatgaa taccgcgttg tcgaacaaaa
      781 taactatgaa ccccataaag cttggggtgc gagcaactta ggtcgcctcg aagattataa
      841 tatggcgcgt tttaacaagt ttgtaactga agttgcgccg attgcaccaa ctgatgccgg
      901 cggcggattg gatacctaca aagataaaaa ccgtttttcc tcttttgtca gagttggcgc
      961 aggcaggcaa ttagtttatg aaaaaggggc ttatcatcaa gaaggaaatg aaaaaggcta
     1021 cgatttgcgc gatctttcac aagcctatcg ttatgccatt gcaggtacac cttataaaga
     1081 tattaatatt gaccaaacaa tgaataccga aggtttgatt ggctttggta atcacaatac
     1141 acactattca gcagaagaac ttaaacaagc actctcgcaa gatgcgttaa caaattacgg
     1201 cgtgttgggc gatagcggct ctccgttatt tgcttttgac aaacaaaaaa atcaatgggt
     1261 ctttttggga acttatgatt attgggcagg ttacggaaaa aaatcttggc aagaatggaa
     1321 tatctataaa aaagaatttg cagataaaat caaacaacgc gataacgccg gcaccatcaa
     1381 aggtaataga gaacatcatt ggaacattac ttttggcaca aacagcaaga ttggttctac
     1441 agcggtaagg cttgccaaca atgaaaggga tgcaaacaac ggacagaatg ttacctttga
     1501 agacaacggc actttggtat tggatcaaaa catcaaccaa ggcgcgggcg gtctgttttt
     1561 caaaggcgat tacacagtca aaggtgcaaa taatgacatc acttggctag gtgcggggat
     1621 tgatgttgcc gacggcaaaa aagtcgtttg gcaagtcaaa aatccgaatg gcgacagatt
     1681 ggcaaaaatc ggcaaaggca cattagaaat aaacggcaca ggcgttaacc aagggcaatt
     1741 aaaagtcggc gacggtacgg ttattctgaa tcaacaagcc gatgccgaca aaaaagtcca
     1801 ggctttctcc caagtcggca ttgtcagcgg acgcggtaca ttggtattaa atagttcaaa
     1861 tcagattaat cccgataact tatatttcgg tttccgtggc ggtcgtttgg atgccaatgg
     1921 caatgacttg acttttgaac acatccgcaa cgtggatgaa ggcgcgcgca ttgtcaacca
     1981 caacacagac cgcgcctcca caatcacatt aaccggcaaa tcattaatta ccgctcctca
     2041 aaatctttct gtttatgaaa tccgaaatga ttacgatgat gacgattatt atggctatta
     2101 cagctataga aaacccattc cgcaaggcaa agatctttat tacaaaaact atcgttatta
     2161 cgccctaaaa tccggcggca gcgtgaacgc accgatgccc gaaaacggac aaacggaaaa
     2221 taacgactgg gtctttatgg gatataagca agaagaagcc cagaaaaacg cgatgaacca
     2281 caaaaacaat cagcgtatta gcggttttag cggtttcttt ggcgaagaaa acggaaaagg
     2341 acataacggc gcattaaacc ttaatttcaa cggcaaaagc gcgcaaaacc gtttcttgtt
     2401 aacaggcggc acgaatttaa acggaaaaat aagcgtaact caaggcaatg tcttgttatc
     2461 aggtcgtcca acaccacacg caagagattt tgtgaacaaa tcttcagccc gaaaagacgc
     2521 acatttctcc aaaaacaatg aagtcgtatt tgaagacgac tggataaacc gcacattcaa
     2581 agccacagaa attgcggtta atcaatccgc atcattctct tccggcagaa atgtatccaa
     2641 cattaccgcc aacatcaccg caacagacaa cgccaaagta aatttgggtt acaaaaacgg
     2701 cgatgaagtt tgcgtgcgct cggactatac cggttacgtt acctgcaaca cagacaactt
     2761 atccgataag gctttaaaca gctttggagc gacacagatt aacggcaatg tgaatttgag
     2821 tcagaatgcg gcattggtct taggcaaggc tgcattatgg gggcaaattc aagggcaagg
     2881 aaacagcagc gtcagcctaa accaacatag caaatggcat ttgaccggcg acagccaagt
     2941 acacaatctg tcattggcgg atagccatat tcatttgaac aacgcttccg acgcgcaaag
     3001 tgcaaataaa taccacacgc tcaaaatcaa tcatttatcc ggtaacgggc attttcatta
     3061 tctgacgcac ctggcgaaaa atcttgggga taaggtgctt gtgaaggaat ccgcatccgg
     3121 tcattatcag ctccatgttc aagataaaac aggcgaaccc aatcaggaag ggctgaatct
     3181 ctttgatgca tcatccgtac aagaccgttc gcacctttct gtttccttgg cgaataacca
     3241 tgtagattta ggcgcattgc gttatacaat caaaacagaa aacggtatta cccgattgta
     3301 caatccttat gccgagaacc gccgccgagt caaaccggcc ccgtctcctg ccacaaacac
     3361 ggcttctcaa gcacaaaagg caacacaaac ggacggtgca caaattgcca agcctcaaaa
     3421 tatcgtcgtc gcaccaccta gcccgcaggc aaatcaagcc gaagaagcaa aacgccaaca
     3481 agcaaaagcg gagcaagtga agcgtcagca agcagaagca gagcgtaaat cggcagagtt
     3541 agcaaaacaa aaagcagaag ccgaacgcga agcaagagag ctggcgaccc gccaaaaagc
     3601 agaacaagaa cgcagcagcg ccgaacttgc acgtcgacat gaaaaagaac gcgaagcggc
     3661 agagttgtcg gcaaaacaaa aagtcgaagc cgaacgtgag gctcaagcat tggcggtacg
     3721 ccgaaaagcc gaagccgaag aggcaaaacg ccaagctgca gagcttgcac gccggcatga
     3781 aaaagaacgc gaagcggcag agttgtcggc aaaacaaagg gtcggggaag aggaacgccg
     3841 tcaaacagcc caatcccagc cgcaacgccg caaacgccgt gccgcaccgc aggattatat
     3901 ggcagcttcc caagaccgtc ctaaacgccg cggacaccgt tcggtacagc aaaacaatgt
     3961 ggaaattgcc caagcccaag cagaacttgt gcgccgacag caggaagaac gcaaagcggc
     4021 agagttgttg gcaaaacaaa gggcagaagc cgaacgtgag gctcaagcat tggctgcgcg
     4081 ccgaaaagca gaagccgaag aggcaaaacg ccaagctgcc gaacttgcac atcgccagga
     4141 agcagaacgc aaagcggcag aattgtcggc aaaccaaaaa gccgcagctg aagcccaagc
     4201 attggcggca cgccaacaaa aagcccttgc gcgtcaacag gaagaagcac gaaaagctgc
     4261 agagttagcc gtcaaacaaa aagcggaaac cgaacgcaaa accgccgaac ttgccaagca
     4321 aagggcagca gccgaagcag caaaacgcca gcaagaagct cgccagaccg ccgaacttgc
     4381 acgtcgtcaa gaagcggaac gccaagcagc agagttgtcg gcaaaacaaa aagccgaaac
     4441 agatcgagaa gcggcagaat cggcgaaacg aaaagctgag gaagaagagc accgtcaagc
     4501 agcccaatcc cagccgcaac gccgaaaacg ccgtgccgca cctcaggatt atatggcagc
     4561 ttcccaaaat cgtccgaaac gtcgcggacg cagatctact ctgccggcac cgccctcgcc
     4621 atcatttgat tcgtcagctt acgcagcacc cagggccttg cataatccgg actggtatga
     4681 aaatgactat gaagaaatcc ccttggatgc gttggaagat gaaaatgtat ctgaatcagt
     4741 tgacacatca gacaaacagc ctcaagacaa tacggaactt catgaaaaat atgaaaatga
     4801 ttatgaagaa atccccttgg atgcgttgga agatgaagat gtatccgaat cggttgacac
     4861 atcagacaaa cagcctcaag acaatacgga acttcatgaa aaagttgaga cagtgagttt
     4921 gcaaccaaga gccgcgcagc cgcgagccca agccgccact cagccgcaag cccaagccgc
     4981 cgcgcaagcc gatgcagtca gcaccaatac caactcggct ttatctgacg caatggcaag
     5041 cacgcaatct atcttgttgg atacaggtgc ttcattaaca cggcacattg cacaaaaatc
     5101 acgcgctgat gccgaaaaaa acagcgtttg gatgtcgaac atcggttatg gccgtgatta
     5161 tgcttccgca caatatcgcc ggtttagttc gaaacgcacg caaacacaaa tcggcattga
     5221 ccgcagcttg tccgaaaata tgcagatagg cggcgtattg acttactctg acagtcagca
     5281 tacttttgat caggcgagcg gcaaaaatac ttttgtgcaa gccaaccttt atggtaagta
     5341 ttatttaaat gatgcttggt atgtggccgg cgatattggt gcaggcagct tgagaagccg
     5401 gttacaaaca cagcaaaaag caaactttaa ccgaacaagt atccaaaccg gccttacttt
     5461 gggcaatacg ctgaaaatca atcaattcga gattgtcccc agtgcgggaa tccgttacag
     5521 ccgcctgtca tctgcagatt acaagttggg taacgacagt gttaaagtaa gttctatgtc
     5581 agtgaaaaca ctgacggccg gactggattt tgcttatcgg tttaaagtcg gcaaccttac
     5641 cgtaaaaccc ttgttatctg cagcttactt tgccaattat ggcaaaggcg gcgtgaatgt
     5701 gggcggtaat tccttcgcct ataaagcaga taatcaacag aaatattcag caggtgccgc
     5761 gttactgtac cgtaatgtta cattaaacgt aaatggcagt attacaaaag gcaaacaatt
     5821 ggaaaaacaa aaatccggac aaattaaaat acagattcgt ttctaaaata ctaaattcat
     5881 agcaaaataa aatgccgtct gaactcaggc ttcagacggc atttttatag tggattaaca
     5941 aaaatcagga caaggcgacg aagccgcaga cagtacagat agacggcaag gcgaggcaac
     6001 gccgtactgg tttttgttaa tccactatat cagacggacg aggttacagt ttaatccctt
     6061 tgagcttcgc gacggtattg atgtctttgt cgccacgacc tgagaggttg accagaatca
     6121 cttggtcttt acccattttc ggcgcatttt tcaccgccca agcaacggcg tggctggatt
     6181 cgagcgcggg gatgatgccc tcgaagcggc agagcaagtc aaaggcttcg agtgcttcgt
     6241 cgtctttggc aacggtgtat tcgacgcgct tgatgtcgtg cagatggctg tgttccgggc
     6301 cgatgccggg gtaatccaag cctgcggaaa cagagtgtgt acccaagact tgaccgtttt
     6361 cgtcctgcat cagatagctg cggaaaccgt gcaatacgcc aatcggtgag cccgaagtaa
     6421 tcggcgcggc gtgatcgggg gtgttcacgc ccaaaccgcc agcctccacg ccgacgaggc
     6481 gcacgttttc ttcgccgata tacgggtgga acaaaccaat ggcgttcgat ccgccgccca
     6541 cgcaggcaac ggcaacgtcg ggctgtctgc cgatggcttc caacatttgt tctttggctt
     6601 cattgccgat cacgcattga aagtcgcgca ccatttcggg atacggcgcg ggaccggcgg
     6661 cggtaccgat gatgtagaat gtgtcatcca cgcgggcgac ccattcgcgc atggcttcgt
     6721 tcatcgcgtc tttcaaagta cggctgccgc tgtcaacgcc gacgacattc gcgcccaata
     6781 atttcatacg gaacacgttg ggcatttggc gttggatgtc gtccgcaccc atgtacacgt
     6841 cgcaagtcat gccgaagcgg gcggcaacag tggcactcgc cacgccgtgc tgacccgcgc
     6901 cggtttcggc gatgacgcgt tttttaccca tacgttttgc caacagtgcc tgaccgatgg
     6961 tgttgttgac tttgtgcgcg ccggtgtggt tcaagtcttc gcgcttcaac caaatttgcg
     7021 cgccacccaa atgctcggac aatcgcgcgg catggtaaac ggggctgggc ctgccgacgt
     7081 agtgtttcaa atcgcggtgg aattcttccc aaaacgacgg gtcgtttttc gctgccttat
     7141 aggcatccgc cagctcttgc aaggcgggaa tcagggtctc ggaaacataa agcccaccgt
     7201 gttcgccgaa aacgcccttc tcgtcgggtg cgtggtaatt cttcatcaga tttcgtcctt
     7261 gtgcttcaaa ttttcagacg gcaatttata gtggattaac aaaaaccggt acggcgttgc
     7321 cccgccttgc cgtactattt gtactgtctg cggcttcgcc gccttgtcct gatttttgtt
     7381 aatccactat atttttcaaa catgccgtcc gaacgggaaa ttgtcggcaa ttataactgc
     7441 ttttcacaca agcccgccat ttcaaaaaac gcccgatacg ccgccgcttt tttcgccaaa
     7501 ctcaaaggat aggcacgcga agtcgaaggc aggcgcgtca gcgtcaaatc ccgtccggca
     7561 aacggaaacg gcacggtttc gcccgttttc ggcattttga tgccgccacc ctgaatatcg
     7621 agcaggattt ccgtcgcctt gccgcctgtc gtacaaatat ggcggcactc gggtattttt
     7681 gccaacaccg ccgccaaatc gacggtttca actaccttta aaaacttgtc ggacgcattg
     7741 ccgtgttccc ttgccgcctt caacacggtc ggacaggacg caattccccg ttcgcgcaaa
     7801 aacgccttga ttttctcggc atcaaacgct ttttcagaca acctttggaa atgcgccgca
     7861 tcattaaaaa acaccagccc gtaaacgcgc cacatatcgt tttggaaatt cggataatga
     7921 aactgcatcg cgcgtttgtc ttccttgggc ggaaacgtcc ccatcatcat gaccgcagcc
     7981 ttcggcggca acacggaatc gaagggatgg gtttcgattt caagcagatt ttcagacacg
     8041 ttcaatcctc caacaggcaa aacggcagac agccggtttt tgcaccaaac cgccaaacac
     8101 ggcaagcctt caaacagcat tatcacgccc tgccgttttc ggttacaatg ccgacatcaa
     8161 acggatactg taaacacatt tatgttccaa cacacaggac gacacttaaa gcaccgccct
     8221 atgtgccatc ctgatttgga aggggttacg cccctcccaa atagagtctg attctaccgc
     8281 cctaaagggc ggggtttcaa ccgaaaagga aacacgatga aagaacacaa agcccgcaag
     8341 cgtttcgggc agaatttttt gcaggacacg cggattatca gcgatattgt caacgccgtg
     8401 cgcccgcagg cggatgatgt cgtgattgaa atcggtccgg gtttggcggc gattaccgaa
     8461 cctttggcga aaaagctgaa ccgcctgcac gttgtcgaaa tcgaccgcga catcgtatgc
     8521 cgtctgaaaa cgctgccgtt tgcggacaag ctcgtcattc atgaaggcga cgtgttgcag
     8581 tttgatttca acggcatcgc aggcaaaaag aaaatcgtcg gcaacctgcc gtacaacatt
     8641 tccacgccgc ttttgttcaa gctggcggag gtggcggacg atgtcgtcga tatgcacttt
     8701 atgctgcaaa aagaagtggt cgagcgtatg gttgccgcgc cgaaaagcaa cgactacggc
     8761 cgcttgggcg tgatgttgca atatttcttc gatatggaaa tgctgattga cgtgccgccc
     8821 gaatcgttcg accccgcgcc gaaagtcgat tccgccgtcg tccgcatgat tccggtgaaa
     8881 caccgcatcg gcagggcgga cgatttcgag tatttcgcca aactcgtgaa actcgccttc
     8941 caccaacgcc gcaaaaccat acgcaacaat ctgaaagagc ttgcaggcga cgatgatttg
     9001 caggcagtcg acatcaatcc gcaagaccgt gccgaacata tcgcgccgga gaaatatgtg
     9061 gcgttgagca attatctagc gggcaaggcc gtctgaaaag ggagtaagcc gatgacgaaa
     9121 tacctgcttt tacccctgat actgccgctt gcagcctgcc tgaccaatcc gaacgaccgt
     9181 ttttttgacg gcagacgcta cacgcttcat catatggagc tcccgtaacg acaacctgca
     9241 acggcaaatg ccgtctgaaa gaaaagacat gatcaaattc aaaaacgtac acaaacattt
     9301 caaagacctg cacgtcatca acggcgtgaa cttggaaatc aaaaaaggcg aagtggtcgt
     9361 cgtctgcgga ccttcgggca gcggcaaatc cacactcatc cgcaccgtca accagcttga
     9421 aagcatcgaa agcggcgaga tttgggtgga cggtgtcaac gttgccgacc caaaaaccga
     9481 tttgaacaaa atccgcgaag aagtcggctt tgtgtttcaa agtttcaacc tctacccgca
     9541 cctgaccgtg ttggaaaaca ttaccctcgc accgatgaag gttaaaggtc aaaatgcgga
     9601 acaggcagag aaaaaagcga tggaactttt ggaacgcgtc ggactggcac acaaaaaaga
     9661 cgccttccct tcccaacttt ccggcggcca gcagcaacgc gtggcgattg cacgcggttt
     9721 ggcgatggaa ccgcgcgtaa tgttgtttga cgaaccgacc tccgcactcg accccgaaat
     9781 ggtcggcgaa gtgttgaaag tgatgaaaga cttggcggaa agcggtatga cgatgatgtg
     9841 cgtaacccac gaaatgggtt ttgcccgcga agttgccgac cgagtgcttt ttgtcgataa
     9901 agggcaaatc ctcgaagacg aaacgcccga agcgtttttt accaacccga aacacgaacg
     9961 cgccaaacaa ttcctgcaac aggtcatgac ccactgatgc tatgccgtct gaaaaccgaa
    10021 cgttcagacg gcatagcccg acaccgcaag atgattgaga aagaaaacca tgtattttgt
    10081 tgaccgcacc gccgtcgtcc tcaagccgac cgtccgcttt ttggaatggc tcaaaagcac
    10141 cgacgaaaat atgcccgacc tgaccataga acagcttcgt gccaactgtt ccgtcttcct
    10201 cgttccgcag ttcgacgaac cggaagccgt cgtttcctat ttcgacgaac gctaccgcca
    10261 gattttcgag gcggagctgg caggttggga catcgataag gataaatggc cgcaagatat
    10321 ggggctgaag gcgttttggg aatttttcga catcgaaatc cacgatatgg tgttggacat
    10381 ggaagaagcg gaattgaaca ttacccccgt gttcgacaac atgatgtaag gctgtgcgcg
    10441 cctttcagac ggcattgagg ccgtcccgca tcctgaacat cctgactgta tcgcttcacg
    10501 ccgcctccct tgccgtctgc ctgacttggt tttacggctg gatgatgtgg ttcggtttgg
    10561 cggctttggt ggcaagttac gcatactcgc tcaggataac gaatctgaaa caccgccatg
    10621 ccataaccgc cattaccata gaccgcgacg gacaggcgga aatcgtatcc ggcaaagaca
    10681 aaacagcggc aacacttgcg ggcagcagta tggttacgcc ttatgcctta ttcttacaat
    10741 gggacacagg cggcacaacc gtcagccaat gcatcatacc cgacatgacg gacaaagaat
    10801 cctaccggcg gctgaaagtc tggatacttt ggcggcagcc gaaaaaaacc gccgaaaccg
    10861 atacaccaag ctgatttcag acggcatttg aacacggaac actcaatgaa aacactgcaa
    10921 gactggctct cgcatttgga aaccgcccac agcggcggct tgatcgatat gggcttggaa
    10981 cgcgtaggcg aagtgaaaaa acggatgaag ctcacgccgc aatgccccgt cgtcgttgtc
    11041 gcgggaacaa acggcaaagg ttcggtctgc gcctacctga cacagattta caaacaggcg
    11101 ggctacaaaa ccggcacact gaccagcccg catttattgc gttacaacga acgcatcgcc
    11161 atcaacgccg aacccgtttc ggacgatacg attattgcct ctttcgagcg catcgaagcg
    11221 gcgcgcagcg aaatatcgct gacttatttt gaattcaata cgttggcggc cgtcgacatc
    11281 ttcatgcgcg aacaggttga cgtgatgata ttggaagtcg gcttgggcgg acgcttggac
    11341 gcggtcaacg cgtttgacgg cgattgcgcg gtggttacca gcgtggattt ggaccatcag
    11401 gcatttttgg gcgatacggt cgagcaggtc ggctttgaaa aagcaggcgt gttccgtagc
    11461 ggcaaacccg ccatctgcgg tcaaaacccc gcgcccaaat cgttgctttc acacgccgaa
    11521 gccataggcg cgaaactgct gatggtgcag cgcgatttcg agtttcacgc gctggaaaac
    11581 atccaatgga actaccactt ccgaccgcag cattcagaca gccccgctcg caaccgtaat
    11641 tccctgccct tccccgcatt gcgcggcgca taccaacttt ccaatgccgc ctgtgcgctg
    11701 accgtgttgg aatgtttgaa cgacaaattg ccggtggaca tcggtgcaat caaacgcgga
    11761 ttgctgctgg ttgaaaatcc cggacgcttc caagtcctgc ccggccggcc gctgaccgtt
    11821 ttggacgtcg gacacaatcc ccacgctgcc cgcgccctgc gccgcagcct gattaatttg
    11881 gcgtttgcgc aaaaacgcac cgccgtgttc agtatgctgt ccgacaaaga catagacggc
    11941 gtgttggaaa ttgtcaaaga ccagtttgac gaatggtata tcgcaccttt ggacatgccg
    12001 cgcggcatga cgctcgagag cctgcaaaac aaactgcacg aacacagcat cgaaaacata
    12061 cagacattcg ccgccgtccg cgaagcatac cgggcggcag cctcaaaagc gggcgagaac
    12121 gacagaatcg tcgttttcgg ctcatttcat accgttgccg atgtcatgtc ggtactttaa
    12181 aaggaaactt ctatgtccga aaacaaacaa aacgaagtcc tgagcggtta cgaacaactc
    12241 aaacggcgca accgccgccg cctcgtaacg gcaagttgct tggttgccgc ctcctgcatc
    12301 ctgctggcag ccgccctcag ttccggccct gccgaacaga ctgccggcga aacaagcggc
    12361 gtagaaaaca aagcggcagg tgcggcacaa acccctgcct tgaaatccgc cgccgacaaa
    12421 ccgcaggact tggcaggcga agacaagcct tctgccgccg acagcgaaat cagcgagcct
    12481 gaaaacgtag gcgcgccgct ggtgctgatt aacgagcgcc tcgaagacag caacatcaaa
    12541 ggtttggaag catccgagaa actgcaacag gcagaaaccg ccaaaaccgc accgaagcag
    12601 gcaaaacaac gcgctgccga aaaagtgccg gcaactgccg acagtacgga tacggtagcg
    12661 tttgaaaaac cgaaacgcac tgccgaaaca aaaccgcaaa aagcggaacg cactgccaaa
    12721 gccaagccca aagccaaaga aaccaaaacc gccgaaaaag ttgccgacaa accgaaaact
    12781 gccgccgaaa aaaccaaacc ggatacggca aaatccgaca gcgcggtaaa agaagcgaaa
    12841 aaagccgaca aggctgaaag caaaaaaaca gccgaaaaag accgttcgga cggcaaaaaa
    12901 cacgaaacgg cacaaaaaac cgacaaagcg gacaagacca aaaccgccga gaaggaaaaa
    12961 tccggtaaaa aagccgccat tcaggcaggt tatgccgaaa aagaacgcgc cttaagcctc
    13021 cagcgcaaaa tgaaggcggc gggtatcgat tcgaccatca ccgaaattat gaccgacaac
    13081 ggcaaagttt accgcgtcaa atcaagcaac tataaaaacg caagggatgc cgaacgcgat
    13141 ttgaacaaat tgcgcgtaca cggtatcgcc ggtcaggtaa cgaatgaata gcctccccat
    13201 tgccgacctc ctcgtctccg ccgtcatcgc cgcctgcatc gtcatttcca cgatgcgcgg
    13261 cgtgattacg gaggcaggct caatggcggc atgggtggtt tccttctttt tcgccaaact
    13321 ctttgccgca cccttcgccg acatcgcctt tgcatcgttc caaccccgcc tgtttgcatt
    13381 ggctctgtcg ttcatttccc tattcgtcat tgcctgtctg atccagaaaa tactccgctc
    13441 gctgctgacc ggggcagttt cggcggtcgg tttgggcttt gccaaccgca ttttgggcgg
    13501 cgtattcggt gcattgaaag gcattttgat tattaccctg ctggtcatgc tcgcttcaaa
    13561 aaccgacctg cccgataccg aagaatggcg gcaatcttac acactgccgt ttttcgtatc
    13621 gctttccgaa gccgtgttga accatagcgg cggcacggcg gaaactccgg aagacgattg
    13681 attgccatac ggatatttca gacggcattc tcttttatgc cgtctgaaat gttttttcct
    13741 ttcctcagcc atatcac
//
LOCUS       DAXHNP010000040        13543 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.040, whole genome shotgun sequence.
ACCESSION   DAXHNP010000040 DAXHNP010000000
VERSION     DAXHNP010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13543
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.040"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..597)
                     /gene="galE"
                     /locus_tag="ACFM5C_000853"
                     /pseudo
     CDS             complement(1..597)
                     /gene="galE"
                     /locus_tag="ACFM5C_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
     gene            complement(676..1020)
                     /locus_tag="ACFM5C_000854"
     CDS             complement(676..1020)
                     /locus_tag="ACFM5C_000854"
                     /inference="COORDINATES: protein motif:HMM:NF014177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFC6068595.1"
                     /translation="MNKQYPKINYIGNKEKIASWICDQLPSDVDTVADVFSGGCSFAY
                     EAKKRGYRVITNDILAINYQIALALIENNHETLNDDDGAMIFSGSPHAGFMSQRYAEK
                     FYFHDEYQQLDL"
     gene            complement(1013..2011)
                     /locus_tag="ACFM5C_000855"
     CDS             complement(1013..2011)
                     /locus_tag="ACFM5C_000855"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6068596.1"
                     /translation="MHTPLTYIDLFSGAGGLSLGFEQAGFQQLLSVEMESDYCQTYRT
                     NFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNH
                     LFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADF
                     GVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAM
                     NHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKPAVCITGDMRKVFHY
                     EQNRALTVRELAALQSFPDNFIFCGSKIAQQQVGNAVPPLLAKAIAESILKMSENE"
     gene            complement(2042..4315)
                     /locus_tag="ACFM5C_000856"
     CDS             complement(2042..4315)
                     /locus_tag="ACFM5C_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HFC6068597.1"
                     /translation="MNITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGG
                     LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYL
                     PYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAI
                     LMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETEGEKFSDYFDHREPVRTMPGHRA
                     LAVLRGRNEGVLNIALKYRPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRA
                     KIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYKNGVKCA
                     VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
                     EMSKMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
                     PKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
                     IVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGTEPLDASAVHPEAYPVVA
                     KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQT
                     ASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
                     VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
                     RAPANSAMADAFAKLKR"
     gene            complement(4379..5029)
                     /locus_tag="ACFM5C_000857"
     CDS             complement(4379..5029)
                     /locus_tag="ACFM5C_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6068598.1"
                     /translation="MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGK
                     STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
                     KNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
                     CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP"
     gene            complement(5026..5823)
                     /locus_tag="ACFM5C_000858"
     CDS             complement(5026..5823)
                     /locus_tag="ACFM5C_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6068599.1"
                     /translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
                     EPLLMTFVIVLMWKFLKADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
                     YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
                     AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
                     TEMFRAGYFGDSVTTYENPWYILLCNLVLLLLGLAVVARFSKGVEPQ"
     gene            complement(5823..6986)
                     /gene="ctrB"
                     /locus_tag="ACFM5C_000859"
     CDS             complement(5823..6986)
                     /gene="ctrB"
                     /locus_tag="ACFM5C_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export protein CtrB"
                     /protein_id="HFC6068600.1"
                     /translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
                     LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
                     SSLDELRKILPVREFYETKGDAFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
                     LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
                     LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
                     QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
                     RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
     gene            complement(7001..8176)
                     /gene="ctrA"
                     /locus_tag="ACFM5C_000860"
     CDS             complement(7001..8176)
                     /gene="ctrA"
                     /locus_tag="ACFM5C_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export outer membrane
                     protein CtrA"
                     /protein_id="HFC6068601.1"
                     /translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
                     VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
                     LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
                     MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
                     QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
                     GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
                     RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
     gene            8311..9444
                     /gene="neuC"
                     /locus_tag="ACFM5C_000861"
     CDS             8311..9444
                     /gene="neuC"
                     /locus_tag="ACFM5C_000861"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HFC6068602.1"
                     /translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
                     YGRTYKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
                     EALAGAAVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
                     EKRKHIHIIGSPDLDVMASSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
                     AQYFKALELSGQNIISIYPNNDTGTESILQELLKYQSDKFIAFPSIRFEYFLVLLKHA
                     KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHMGKSIIHTDYETKNIFDAIQQACSLG
                     KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
     gene            9448..10134
                     /gene="neuA"
                     /locus_tag="ACFM5C_000862"
     CDS             9448..10134
                     /gene="neuA"
                     /locus_tag="ACFM5C_000862"
                     /EC_number="2.7.7.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acylneuraminate cytidylyltransferase"
                     /protein_id="HFC6068603.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
                     FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
                     LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
                     LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
                     AENILNHKES"
     gene            10135..11184
                     /gene="siaC"
                     /locus_tag="ACFM5C_000863"
     CDS             10135..11184
                     /gene="siaC"
                     /locus_tag="ACFM5C_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysialic acid capsule biosynthesis protein
                     SiaC"
                     /protein_id="HFC6068604.1"
                     /translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
                     YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
                     KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
                     ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFLDAIIGLSDHTLD
                     NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
                     TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYESLFGKIAA
                     CDIRKGAQIKKTDIE"
     gene            11268..12755
                     /locus_tag="ACFM5C_000864"
     CDS             11268..12755
                     /locus_tag="ACFM5C_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,8-polysialyltransferase family protein"
                     /protein_id="HFC6068605.1"
                     /translation="MLKKIKKALFQPKKFFQDSMWLTTSPFYLTPPRNNLFVISNLGQ
                     LNQVQSLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNIT
                     PKKLLYIYRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAP
                     LLESFSYHPTKLERYLIGNNLNIKGYIDYFDILHVPFPEYAKKIFNAKKYNRFFAHAG
                     GISINNNIANLQKKYQISKNDYIFVSQRYPISDDLYYKSIVEILNSISLQIKGKIFIK
                     LHPKEMGNNYVMSLFLNMVEINPRLVVINEPPFLIEPLIYLTNPKGIIGLASSSLIYT
                     PLLSPSTQCLSIGELIINLIQKYSMVENTEMIQEHLEIIKKFNFINILNDLNGVISNP
                     LFKTEETFETLLKSAEFAYKSKNYFQAIFYWQLASKNNITLLGHKALWYYNALYNVKQ
                     IYKMEYSDIFYIDNISVDFHSKDKLTWEKIKHYYYSADNRIGRDR"
     gene            13000..>13543
                     /locus_tag="ACFM5C_000865"
     CDS             13000..>13543
                     /locus_tag="ACFM5C_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element ISNme1 family transposase"
                     /protein_id="HFC6068606.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKTR
                     YLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYS
                     TLCRYRNWLAQDNTLSELLELINRQLTEKGLKVEKASAAVIDATIIQTAGSKQRQAIE
                     VDEEGQVSGQTTLSKDKNARW"
BASE COUNT         3924 a         3234 c         2738 g         3647 t
ORIGIN      
        1 attacttacc cagcgccatg aatcttccat catttgggtt aaatcacgct gcgtttgcca
       61 gccgatttgc gccttcgtat aagaagggtc ggcatagaag cacgccaaat caccggcgcg
      121 gcgcggtttg atttcaaatg gaatggttaa acccgaagcc gcttcaaatg cgcggatgat
      181 ttccaatacc gaagaagcgc ggccggaacc taagttcaac aaatgcgtgc ctgctacatt
      241 gcttttcgcc tgcatagccg cgacatggcc ttctgccaaa tccatcacat gaatatagtc
      301 acgcatcccc gtgccgtcgg gggtagggta gtcatcgcca aataccgcca attgcggcag
      361 tttgcctgcc gccacttggc agatataagg caacaaatta tttgggatac cgtttggctg
      421 ctcgccaatc aagccgcttt catgcgcgcc aattggattg aaataacgca acaaaatcat
      481 gctccagcgc ggatcggctt tttgaatgtc agtgagaatg cgctcaacca tcgatttcga
      541 tgcgccgtaa gggctggtcg tatcccccgg ttgcatatct tccgtatagg gcattttacg
      601 tatcatggcg cgacgcatta aagtaaacgc caaagcgcgt ttatactggt tatccagttt
      661 ccctatattt ttacgttaca aatcaagttg ttggtattca tcgtgaaaat agaatttttc
      721 ggcataacgc tgactcataa aaccggcatg cgggctacct gaaaaaatca ttgcgccatc
      781 atcgtcattt aatgtttcat ggttgttttc tattaatgct aaagcaattt ggtaattaat
      841 tgccaaaata tcgttagtaa tcacacgata gccgcgtttt ttggcttcat aggcaaagga
      901 acagcctcca ctaaatacat ctgcaactgt atctacatca gacggaagct ggtcacaaat
      961 ccaggaagct attttctctt tattaccgat atagttaatt ttcggatatt gcttattcat
     1021 tttcactcat ttttaaaata ctttcagcaa tagcttttgc caataaaggc ggtacggcgt
     1081 taccaacctg ctgctgggca attttgctgc cgcaaaaaat aaaattatca gggaaagatt
     1141 gtaaggcagc taattcacga acggttaaag cccgattctg ttcatagtga aaaactttgc
     1201 gcatatctcc tgtaatacaa acggctggtt tgttgctgtt gtaacggatg tatttacgga
     1261 tatcacctgt tttcggacgt aatggttcag gaatatcgtt acggttacct ccatttttaa
     1321 caaatgccat tttttctaac atttgtgccg aatgattcat agcttcatga tttgcaacgt
     1381 gtggattgct ttcgccagca gccagttttg gaaaatgtcc tattgctgat ccaacagtct
     1441 gatgggaaat ctgcaaaggt tcgggaaagg aaattttgcc tttatccctc ctcccgataa
     1501 atatcactcg gctacgtatc tgaggaacac cgaaatcggc tgcactcagt atcttacatt
     1561 ccaccgaata accgatattc tgaaatgctt gaataatctc aatacgtgtt ttacctgaat
     1621 tgtgtgtata gagtcgcgct acattttcca taacaaaaaa atatggttgg acaattttaa
     1681 ctattcggac aaactcttta aataaatggt tgcgtgggtc atctgtaaat gtccgtccaa
     1741 tctttcctgc catactaaaa ccttgacaag gtggtcctcc aataatcaaa tcaactgctt
     1801 gtccgttaag acaattgatt aaatcttgtt cggttagtgt ggttaaatct ttttgcagta
     1861 attgatgatg ggggaagttg gtacggtaag tctgacaata atcagactcc atttcaacag
     1921 aaagcaattg ttggaatccg gcttgttcaa aacccaagga taggcctcct gctcctgaga
     1981 aaaggtcaat ataggtaagt ggtgtgtgca taagtcaaaa tccataaact cttcgattat
     2041 tttaccgctt cagcttcgca aacgcatccg ccatcgccga attggctggg gcgcggtcgt
     2101 tgcgttgggg tttgcggccg gctgtccgtt cgcggctgcg gttttcagac ggcattttat
     2161 gttttgcgcc gcccggttcg tcatccaagc gcatggtcag cgcgatgcgt ttgcgtgcag
     2221 catcgacttc cagcactttc actttcacca cgtcgccagc tttcaccact tcgcgcgggt
     2281 cttggacgaa cttgttggac agggcggaga tgtgcaccaa gccgtcctga tggacgccga
     2341 tgtccacgaa cgcgccgaag ttggcgacgt tggaaaccac gccttcgagt atcataccga
     2401 cttgcaagtc gctgatttcg tggatacctt cggcaaacga tgccgtctga aactcgccgc
     2461 gcggatcacg gccgggtttt tccagttcgg acaggatgtc caaaatggtc ggcaggccga
     2521 agcgttcgtc ggtgaagtcg gacgctttga tttgcttcac gcgctcgcgg ttgccgatga
     2581 gttcggcggc gctaatgcct tgttgcgcca gcattttggc gacgacggga taggcttcgg
     2641 ggtggacggc gctcgcgtcc agcggctctg tgccgccgtt aatccgcaaa aagcctgccg
     2701 cctgctcgaa ggttttttcg cccaaacgcg gtactttcag caattttttg cggctgtcga
     2761 acgcgccgtt ttcatcgcgg taggcaacga tgttttgggc aagggtttga ttcaaaccgg
     2821 aaattcgcgc caagagcggg gcggaggcgg tgttcacgtc cacgccgacg gcgttcacgc
     2881 agtcttcgac caccgcgtcc agcgatttgg cgagctggct ttggttcacg tcgtgctgat
     2941 actgccccac gccgatggat ttggggtcga ttttgaccaa ctcggcaagc gggtcttgta
     3001 gcctgcgggc gatggacacc gcgccgcgca gggaaacgtc caagtcgggg aactcgcgcg
     3061 ccgccagttc ggacgcggaa taaatcgacg cgccggcttc ggacacgacg attttatgca
     3121 gccccatttt cgacatttca cgcaccagtt cgcccgcgat tttgtcggtt tcacggctgg
     3181 cggtgccgtt accgatggcg atgagcttca cgccgtgctg tttaatcagg cgcgacagcg
     3241 ttgccaacat attgttttct tgatgtaaat agacaatgac ggtatccagc agcttgcccg
     3301 tgtcgtccac cacggcacat ttcacgccgt tcttgtatcc agggtctaga cccaaagtgg
     3361 tcagccgtcc ggcgggtgcg gcgagcagca agtctttgag atttcgggca aacacggtaa
     3421 tcgcgtcggt gtcggcggct tctttcaaac gattgagagc ttcgagttcc aacgacaaaa
     3481 agattttcgc gcgccaagtc aggcgcacgg tgtcgcgcag ccatttgtgg ccgtctgaaa
     3541 ccttgaaacg gcgggcgatg atttgctcgt attcgctttg ctgcgtaatc ggcgtgtcgt
     3601 cgggccggta tttgagcgcg atgttcaaca cgccttcgtt gcggccgcgc aaaaccgcca
     3661 acgcgcggtg gccgggcata gtgcggacgg gttcgcggtg gtcgaaataa tcgctgaatt
     3721 tttcgccttc ggtttctttg cctccaacaa cttgcgcgtg gatttcggct tcgttccaca
     3781 gcttgtcgcg cagcgtgccg atgagttccg cgtcttcggc aaactgctcc atcagaatcg
     3841 cacgcgcgcc gtccaacgcg gctttggcat cggggacgtt ttcgttcagg tagccttgtg
     3901 cggcggcttc cacgtcctgc gactgctcgg caagcaacac gtccgccagc ggctgcaaac
     3961 cgtgttcgcg cgcgatttgc gctttggtgc ggcgtttggg tttgtagggc agatacaggt
     4021 cttccagcgc ggttttgtta tcggcggctt cgatttgcgc cctgaggtcg tctgaaagct
     4081 tgccttgctc ttcaatgctt tttaaaacaa cggctttgcg ctcttccaac tcgcgcagat
     4141 attgcagccg ctcggcaagc cggcgcaact gcgtatcgtc caacccgccc gtcgcttcct
     4201 tgcggtagcg ggcgataaac ggcacggtcg cgccgtcgtc caaaagctcg acggcggcgg
     4261 tgatttgcgc ggcagtcgcg gagagttctt gggaaagaat ttgagtaatg ttcatcaata
     4321 gaattccaac ggacaggccg tctgaaattt cagacggcct gatttaaaaa caatcgcttt
     4381 aaggcagcga attataatat tcgtaggctt tgtccatatc ttcaaactgg tacatatgcc
     4441 ctttttccag caccatcgca ttatcgcaat attgcttcat ggcgctgtgg ctgtgcgaca
     4501 ccaagatgat ggaacggtct ttgcgctttt caaacaactc gtacttacat ttatcggcaa
     4561 aacgcgagtc accaactgca atcacttcgt caatcaaata gcaatcaaac tctaccgcca
     4621 acgacaaagc aaatgccaaa cgcgccttca tacctgaaga ataacgcttg accggctcgt
     4681 aaagatattg ccccaactcg gaaaactctt cggtaaagtt cttcacataa tcgatatcga
     4741 cattgtaaat ccggcagatg aaacgcaaat tgtccatacc ggtcagacta ccttgaaacg
     4801 caccggagaa tgccaaaggc caagaaatac tcattgtccg cttgatttca cccgtggtcg
     4861 gcggctcaac gccactgatc aaacggatga gcgtcgattt acctgcaccg ttgcggccga
     4921 gaataccgat tttctcgccc ttctccattt tgaagctaat atcgtgcaag actgtccgcc
     4981 aaccttggcg ggtcagatag cgtttggaaa cgtgttcaac tgaaatcatt gcggctcaac
     5041 ccctttgctg aatctcgcca ccaccgccaa accaagcagc agcaaaacca agttacacaa
     5101 caaaatatac caaggatttt cgtaagtcgt gacgctgtcg ccaaaatatc cggcacggaa
     5161 catttctgtg ccatgcacca tcgggatcat caatgcatac tcttgcactt tcggaggcaa
     5221 attatgtaca aaaaagaatg cacccgataa cggcatcatc acaaaagtca atgtgcccca
     5281 aatcttgcca aacggctcga aattaaaggc aatcgaacaa atcaccaaac ccaaaccaat
     5341 cgcaaaaaaa gccatcaaaa gccaagccat cagcatataa aacatatctg ccggcatttc
     5401 aatccagcca atcgcaatca ataccgccat aatcacaatc tgcgcaatgg ttgcaccagc
     5461 aatttccaaa atcatgcgcg ccaagatggt atccaaaact cttacattgc ggtgataaag
     5521 caagctggca tttgaagaaa tcgacccaac tgcccgtttt gaggcattac gccacatcat
     5581 caacatcgga tagccagtaa tcgcaaatgc gacaatattc aaagttgaat atcggtctgc
     5641 ctttaaaaat ttccacatca agacgataac gaatgtcatc agcaacggct caacaaacag
     5701 ccataaaaag ccaatattat tgcgaccgta acgggtgata atttcccgca tcaaaagcgc
     5761 accgattacg cgcctttgaa tggctaaaga ttcccaaaat gatgttttat gcaaggcttt
     5821 catcagtttt tatgctcacg aatgctggca gtcaacaggc tcaaaatacc ataaaccatc
     5881 aagccgataa tcagagtggc aacaatgttg tataaccgtt taggctcatg tgccaaatcc
     5941 ggcaggctcg gttgcgagat cacttccaaa taaagctgct gacggtctgc ttcaaccttg
     6001 gcactttcca aagaagtcat ggcggctgcc aactgctgct ctgccaactg gttttccaaa
     6061 tacacacgct gatattcggc agcctgatta gacaacgaag aatgcccacc gcccgaaatg
     6121 gcacgtaact gttggtcaat ttctttacgc aagctctgct cacgcgcctg caaacccgga
     6181 atctgcggat tctccggagt gactgctttc acctgatcca gctgggtttg aatcacaatc
     6241 aattcatctt gcagcttgga aaccaacccc atttgcactt ccgattgcgc tttcaaatca
     6301 aaaacgccat tggcaatccg gtaatccgtc agattctgag aggcttcctt tacccgctct
     6361 gccgccgttt tcactacttc ttccgcatag cgcaccgtat cagcacgtgc acgatcgttc
     6421 aactggttaa tcaatgcttc accttgtttt aacaaagcct cattgatttt cttagattcc
     6481 agcgcatcaa aggaagttac attcaacgtg gaaatacccg aaaccgtatc aaaattgatc
     6541 atcacctgat ttttatagta ttgataaaaa gcctcttcct cgccacggaa tccaaaccca
     6601 ttaaagcggc tgaacgcatc acctttggtt tcataaaact cacgcaccgg caagatttta
     6661 cgcagttcat ccaaagacga gcgcgaacgc atatactccc caaccgtgta aatatcatct
     6721 tgcgcacggg caaaacctgt gccctgcaaa atggcaccca ggccattgag agaagattgg
     6781 cttttaggcg agcgcaccac aaagctcgat tgcgacgtaa aacgatcgga agcgaagaag
     6841 ccgaaataca ccaacgaaat taccgtaggg ataatcaccg ttacccaaaa taaagggctt
     6901 agctttttaa tccaactttt ctttttcggc tttttacgct cggctttggt ttcagtggca
     6961 actgccacag gaagttgctc agacatctta cttactcaca ttaattagtt aaattattaa
     7021 tactgttcgc gccactggta accggcgaga acacaaacga caaaaatttc tgcacttcag
     7081 ccaacggcgc attcgacaca tacaatacat ctttattctt cacaggaaag cgctgcatag
     7141 aaaatagcga atgcgcatca gccatattca cacgatatac cgttggaatc tctgcctcac
     7201 tgccataacc ttgagcaatc catttatcct gacgttctgc cggcaattcc accaatggcg
     7261 tatagcggaa cacaaacaca ccacgcgcat cagaacggcg atcttgcaaa ccgcccatac
     7321 ggccaatggc ttcagaaagc gataagcctc tggctgaaaa accgatttct tgtgttctcc
     7381 ccaccgcacc catagacgta aaggtatagg gattggtaat catggtaacc acatcaccgc
     7441 gacgcagcaa aatattttgt cgcggatttg caactaaatc ttccaaggca acagttcgta
     7501 ctacattgcc acgtgtcagc tgcacattcg tatcctgcac atttgccgtt gaaccaccta
     7561 ccgcagccac cgcatccaac acacgctcac cggctgccgt cagcggcata cgcacactat
     7621 tcccagcacg aatcaccgac acattcgccg cattattctg caccaaacgc accatcactt
     7681 gtggctgatt ggccattttt ttcaggcggc ctttaataat ttcctgaacc tgaccaggcg
     7741 ttttaccgac caccgaaata tcgccaacaa acggcacaga aaccgtacca cgtgccgtga
     7801 ccaactgctc tggcaactta gtttgatgcg cactacccga gcccatcgaa gaaaggccac
     7861 caccaaacaa tactgccggc ggcgcttccc aaatcataat atccaataca tcaccaatat
     7921 ttagcgtacc agccgaagca taaccatcgc caaactgagt gaatgactga tttatctgag
     7981 ccttatataa taactgagca accgtatgat tcacatcaat cagctccact tcgggaattt
     8041 gaacttcaga ttgttgccct aaagagacaa ttttttttgc gctggggcct gatgaaggaa
     8101 tcgcagagca tcctacaatt aaacttccac acaataataa tactgcgtga cgaatataaa
     8161 atttcacttt aaacacaagc caaatcctaa tataattata aatggcctaa ttatagcact
     8221 taatcgaaat aaatttatga gtacgtagag tataattagt attcttcttt ccaacttcct
     8281 tatacttata tacttataga ttctaaaatc atgaaaagaa ttctttgcat tacaggtacc
     8341 agagccgact tcggcaagct aaaaccttta ttagcctata ttgaaaatca cccagacctt
     8401 gaattgcatt tgattgtaac tggtatgcat atgatgaaaa catatggcag aacctacaag
     8461 gaagtaactc gagaaaacta tcaacataca tatctgtttt caaatcaaat ccaaggtgaa
     8521 ccaatgggtg ccgttttagg caataccatt acgtttatct ctcgtctatc tgatgaaatt
     8581 gaacctgata tggtcatgat tcacggcgac cgtttagaag cactagcagg cgcagctgta
     8641 ggtgcattaa gcagccgttt agtttgccat atcgaaggtg gtgaactatc tggtacagta
     8701 gatgactcca ttcgtcattc tattagtaaa ctttctcata tccacttggt agcaaatgaa
     8761 caagctgtca ctcgcctagt gcaaatggga gaaaaaagaa agcatattca catcatcggc
     8821 tcccccgatt tagatgttat ggcctcttcc accctcccat ccttagaaga agtcaaagaa
     8881 tattacggtt taccatacga aaattatggt atttctatgt ttcaccccgt gactacagaa
     8941 gcacatttaa tgccacaata tgcggcccaa tatttcaaag cattagaatt aagtggccaa
     9001 aatatcatta gcatctaccc taataatgac actggcactg aaagtattct gcaagaatta
     9061 ttaaaatatc aatctgataa atttattgca tttccttcca ttcgatttga atatttttta
     9121 gtcttattga aacatgctaa atttatggtc ggcaactcaa gtgcaggtat tagagaagct
     9181 cctctctacg gtgtcccttc aattgatgtt ggtacacgcc aaagtaaccg ccatatggga
     9241 aaatctatta ttcatacaga ttatgaaact aaaaatatct ttgatgcgat tcaacaagca
     9301 tgcagtttag gcaaatttga agcagatgat acctttaatg gcggagatac tcgcaccagc
     9361 acagaaagat ttgctgaagt aatcaacaat cctgaaacgt ggaatgtttc tgctcaaaaa
     9421 cgttttatcg atttgaatct ttaaattatg gaaaaacaaa atattgcggt tatacttgcg
     9481 cgccaaaact ccaaaggatt gccattaaaa aatctccgga aaatgaatgg catatcatta
     9541 cttggtcata caattaatgc tgctatatca tcaaagtgtt ttgaccgcat aattgtttcg
     9601 actgatggcg ggttaattgc agaagaagct aaaaatttcg gtgtcgaagt cgtcctacgc
     9661 cctgcagagc tggcctccga tacagccagc tctatttcag gtgtaataca tgctttagaa
     9721 acaattggca gtaattccgg cacagtaacc ctattacaac caaccagtcc attacgcaca
     9781 ggggctcata ttcgtgaagc tttttctcta tttgatgaga aaataaaagg atccgttgtc
     9841 tctgcatgcc caatggagca tcatccacta aaaaccctgc ttcaaatcaa taatggcgaa
     9901 tatgccccca tgcgccatct aagcgatttg gagcagcctc gccaacaatt acctcaggca
     9961 tttaggccta atggtgcaat ttacattaat gatactgctt cactaattgc aaataattgt
    10021 ttttttatcg ccccaaccaa actttatatt atgtctcatc aagactctat cgatattgat
    10081 actgagcttg atttacaaca ggcagaaaac attcttaatc acaaggaaag ctaaatgcaa
    10141 aacaacaacg aatttaaaat tggtaatcgt tcagtaggtt acaaccacga accattgatt
    10201 atctgtgaaa tcggcatcaa tcatgaaggc tctttaaaaa cagcttttga aatggttgat
    10261 gctgcctata atgcaggcgc tgaagttgtt aaacatcaaa cacacatcgt tgaagacgaa
    10321 atgtctgatg aggccaaaca agtcattcca ggcaatgcag atgtctctat ttatgaaatt
    10381 atggaacgtt gcgccctgaa tgaagaagat gagattaaat taaaagaata cgtagagagt
    10441 aagggtatga tttttatcag tactcctttc tctcgtgcag ctgctttacg attacaacgt
    10501 atggatattc cagcatataa aatcggctct ggcgaatgta ataactaccc attaattaaa
    10561 ctggtggcct cttttggtaa gcctattatt ctctctaccg gcatgaattc tattgaaagc
    10621 atcaaaaagt cggtagaaat tattcgagaa gcaggggtac cttatgcttt gcttcactgt
    10681 accaacatct acccaacccc ttacgaagat gttcgattgg gtggtatgaa cgatttatct
    10741 gaagcctttc tagacgcaat cattggcctg tctgaccata ccttagataa ctatgcttgc
    10801 ttaggagcag tagctttagg cggttcgatt ttagagcgtc actttactga ccgcatggat
    10861 cgcccaggtc cggatattgt atgctctatg aatccggata cttttaaaga gctcaagcaa
    10921 ggcgctcatg ctttaaaatt ggcacgcggc ggcaaaaaag acacgattat cgcgggagaa
    10981 aagccaacta aagatttcgc ctttgcatct gtcgtagcag ataaagacat taaaaaagga
    11041 gaattgttgt ccggagataa cctatgggtt aaacgcccag gcaatggaga cttcagcgtt
    11101 aacgaatatg aatcattatt tggtaaaatt gctgcttgtg atattcgcaa aggtgctcaa
    11161 atcaaaaaaa ctgatattga ataatgctta ttaacttagt tactttatta acagaggatt
    11221 ggctattaca tatagctaat tctcattaat ttttaagaga tacaataatg ctaaagaaaa
    11281 taaaaaaagc tctttttcag cctaaaaagt tttttcaaga ttcaatgtgg ttgacaacat
    11341 ctccatttta tcttaccccc ccacgtaaca atttatttgt catatctaat ttaggtcagc
    11401 ttaaccaagt ccaaagccta attaaaatac aaaaattaac caataattta ctagtaattt
    11461 tatatacttc taaaaactta aaaatgccta agttagttca tcaatcagct aacaagaatc
    11521 tatttgaatc tatttatcta tttgagcttc ctagaagccc taataatata actcctaaaa
    11581 aattacttta tatttataga agttacaaaa aaatccttaa tattatacag cctgctcatc
    11641 tctatatgct gtcttttaca ggccactact cctatctgat tagtattgca aaaaaaaaga
    11701 atattacgac tcatttaatt gatgaaggga ctggaacata tgctccttta ttagaatcat
    11761 tttcatatca tccaacaaaa ttagaacgtt atttgattgg aaataatctt aatattaaag
    11821 gatatataga ttattttgac atattgcatg tcccctttcc tgaatatgct aaaaaaatat
    11881 ttaatgcaaa aaaatataac cggttttttg cgcatgctgg aggaataagc attaataata
    11941 acattgcaaa cttacagaaa aaatatcaaa tatctaaaaa tgactatatt tttgttagtc
    12001 aacgctaccc catttcagat gatttgtatt ataagagtat agtagaaatc ttaaacagca
    12061 taagtttaca aattaaagga aagatattta ttaaactaca cccaaaagag atgggcaaca
    12121 actatgtaat gtctttattt ctaaatatgg tagaaataaa ccctcggctg gtagttatta
    12181 atgaacctcc ttttctaatt gagcccctaa tatacttaac aaatcctaaa ggaattatag
    12241 gcctggcctc tagttcttta atttatacac cattactctc accctcaacc caatgtcttt
    12301 ctattggaga gttaattatt aacttaattc aaaaatattc aatggtggaa aacactgaaa
    12361 tgatccaaga acacttagag attattaaga aatttaattt tattaatata ctaaatgatt
    12421 taaatggggt aataagtaac cctctcttta aaacagaaga aacatttgaa acacttctta
    12481 aatctgcaga attcgcatat aaatctaaaa actactttca ggctattttt tactggcaac
    12541 ttgccagcaa aaacaatatt accttattag ggcataaagc attatggtac tacaatgcac
    12601 tttataatgt aaaacaaatt tataagatgg aatattcaga tattttttat atcgataata
    12661 tctccgtaga ctttcatagt aaagataaat tgacatggga aaaaattaaa cattattact
    12721 attccgccga caatagaatt ggtagagata gataaaaata ctatgacttc tgatctccat
    12781 acgtatgctt gttttcaaaa agcagcatta agatagataa gtgaagcttg atgagagcca
    12841 tttttgtggt catcgccaag gtacacgcgg agagtaatcg acaacagagc tgctgtattc
    12901 tggcttttaa agcccagtag taaagtttat aaggctgaga cctttgcaaa atcccccaaa
    12961 atcccctaaa ttcccaccaa gacatttagg agatttctca tgagcacctt cttccagcaa
    13021 accgcccaag ccatgattgc caaacacatc gaccgtttcc cgctattgaa gttggatcag
    13081 gtaattgatt ggcagccgat cgaacagtac ctgaatcgtc aaaaaacccg ttacctcaga
    13141 gaccaccgcg gccgtcccgc ctatcccctg ttgtccatgt tcaaagccgt cctgctcgga
    13201 caatggcaca gcctctccga tcccgaactc gaacacagcc tcatcacccg catcgatttc
    13261 aacctgtttt gccgttttga cgaactgagc atccccgatt acagcacctt atgccgctac
    13321 cgcaactggt tggcgcaaga caacaccctg tccgaattat tggaactgat caaccgccaa
    13381 ctgaccgaaa aaggcttaaa agtagagaaa gcatccgccg ccgtcattga tgccaccatt
    13441 attcagactg ccggcagcaa acagcgccag gccatagaag tcgacgagga aggacaagtc
    13501 agcggtcaaa ccacactgag taaggacaaa aatgcccgtt gga
//
LOCUS       DAXHNP010000041        13225 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.041, whole genome shotgun sequence.
ACCESSION   DAXHNP010000041 DAXHNP010000000
VERSION     DAXHNP010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13225
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.041"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(43..810)
                     /locus_tag="ACFM5C_000866"
     CDS             complement(43..810)
                     /locus_tag="ACFM5C_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HFC6068607.1"
                     /translation="MSSNKASFFTRLRRLCRLTVWLFKTGKNLRGIDGGCPESRNRAV
                     IELGRGALTALDIGLEVGRPAPEHPNGVLVAANHVSWLDIFAMSAVYPSSFIAKQEIK
                     SWPVLGKMGQNAGTVFINRNSRRDIEPINRAVYETLQRGQNVSFFPEARTSSGLGLLP
                     FKAALFQSAIDAGAKVLAVALRYYDETGKRTARPSYADVGLPTCLWRIVSMKKLTIKV
                     DFVCVADAAESEDRYALKDKIEESIRAVVADDADIAV"
     gene            complement(898..1725)
                     /gene="mutM"
                     /locus_tag="ACFM5C_000867"
     CDS             complement(898..1725)
                     /gene="mutM"
                     /locus_tag="ACFM5C_000867"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HFC6068608.1"
                     /translation="MPELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEI
                     LSGRQVLSCGRRAKYLLIRFQTGVLLIHLGMSGSLRIFTPSDGRIGRPDRHDHVDIVF
                     SDGTVMRYRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCTDYLYVRLKAQKRAV
                     KLALMDNAVVVGVGNIYANESLFRAGISPHRPANRLKKKECALLVETVKAVLRRAIET
                     GGSTLRDFVDSDGKSGYFQQEYTVYGRHNQPCPQCGGLVVKETLGQRGTFYCPNCQK"
     gene            complement(1777..2442)
                     /locus_tag="ACFM5C_000868"
     CDS             complement(1777..2442)
                     /locus_tag="ACFM5C_000868"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6068609.1"
                     /translation="MDAWFEDTAMGRYVAKLEQDFFGRYLDSYRFSGMCAVQVGGPWL
                     SLSEDVVCVPRDMSMSAENMALADVSADMLLFPHTLEGGVPSQILSEAHRILKPCGRL
                     MLTGFNPYSLWGFSRWFDGERLPEKRFCLPLPELKRLLADAGFDIELGKFMVYLPPVS
                     SLGQIRFWQFMEKAGDRWWPQCAAVYGLVLVKRAAGVTPLPAWDGYLGGKALAAGAAR
                     IAD"
     gene            2620..4596
                     /locus_tag="ACFM5C_000869"
     CDS             2620..4596
                     /locus_tag="ACFM5C_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6068610.1"
                     /translation="MSKLKTIALTASGLSVCPGFLYAQNTSSHQIGLAIMRLNSSILD
                     LPPTKQYFQSGSLWSELRQGFRMGEVNPELVRRHESKFIASHSYFNRVINRSRPYMYH
                     IANEVKKRNMPAEAALLPFIESAFVTKAKSHVGASGLWQFMPATGRHYGLEKTPVYDG
                     RHDIYAATDAALNYLQYLYGLFGDWPLAFAAYNWGEGNVGRAINRARAQGLEPTYENL
                     RMPNETRNYVPKLLAVRNIIATPQSFGMNISDIDNKPYFQAVEPDRPLDNEAIVRLAG
                     ITQSELLALNPAFNVPAFIPKSKRKLLLPVASVQTFQSNYLNAAPDSLFSWEVYTPAA
                     KTSLSDISTATGMSIADIKRLNNLNGNLVNAGRSILVAKNGKTLQTASESVVSIDIDN
                     TPDTYRSNMPAGTVNVGIARIRPAAAQTADITVAPLPQKTVRTEPDPLVRIAEPALAT
                     AAAQPQTEKQTAMPSETQTATLAQIIPQNDMQAADELMQLVARNNLRRQAEETISAVI
                     GTPDTVAEHNISSSPQHTVAADGKRRARLETRVAKAADGEAEISPLHASIHRVVEGDT
                     LFNIAKRYNVSVADLIVANNIKGNTIQKGQVLRLAQAAPAQTRIEKVSYTARKGDTFK
                     SIAARFNIHIDDIRRLNPNLNTINPGQRVKLIGS"
     gene            4664..5356
                     /locus_tag="ACFM5C_000870"
     CDS             4664..5356
                     /locus_tag="ACFM5C_000870"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HFC6068611.1"
                     /translation="MKLIKYLQYQGIGSRKQCQWLIAGGYVFINGTCMDDTDADIDSS
                     SVETLDIDGEAVTVVPEPYFYIMLNKPEDYETSHKPKHYRSVFSLFPDNMRNIDMQAV
                     GRLDADTTGVLLITNDGKLNHNLTSPSRKIPKLYEVTLKHPAGETLCETLKNGVLLHD
                     ENETVYAADAVLESPSALLLTITEGKYHQVKRMVAAAGNRVQHLHRRRFAHLETENLK
                     PGEWKFIDCPKF"
     gene            5882..7197
                     /locus_tag="ACFM5C_000871"
                     /pseudo
     CDS             5882..7197
                     /locus_tag="ACFM5C_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519747.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
     gene            7441..8097
                     /gene="cmk"
                     /locus_tag="ACFM5C_000872"
     CDS             7441..8097
                     /gene="cmk"
                     /locus_tag="ACFM5C_000872"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - (d)CMP kinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HFC6068612.1"
                     /translation="MNRQKVIAIDGPGASGKGTVAARVAAALGYDYLDTGALYRLTAL
                     YAQKQGVGWHDEENVSELAKKLPAVFSGSRILLGGEDVSDGIRTEAIGMGASAVAQLP
                     KVRAALLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESKIRAERRAKQIGIP
                     CEGLAFERILSDIEARDEADRNRKVAPLKQQPDALLLDTSRLTIEETVKKVLDWYRKV
                     "
     gene            8253..9938
                     /gene="rpsA"
                     /locus_tag="ACFM5C_000873"
     CDS             8253..9938
                     /gene="rpsA"
                     /locus_tag="ACFM5C_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFC6068613.1"
                     /translation="MSMENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLK
                     SESLIDVAEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEA
                     MENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKL
                     DKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL
                     LHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYP
                     QGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL
                     EIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLV
                     HLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVND
                     KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVT
                     VDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGTTSLGDLLKAKLSGEQE"
     gene            9949..10263
                     /locus_tag="ACFM5C_000874"
     CDS             9949..10263
                     /locus_tag="ACFM5C_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HFC6068614.1"
                     /translation="MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLAR
                     GQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALKEN
                     AN"
     gene            complement(10614..11021)
                     /locus_tag="ACFM5C_000875"
     CDS             complement(10614..11021)
                     /locus_tag="ACFM5C_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFC6068615.1"
                     /translation="MTYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDN
                     DLQWLGLLQCLKNTGMSLKDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKR
                     YLDLLEYKLAFYQKAKALGSVKAVNLPQIPETA"
     gene            11169..12278
                     /locus_tag="ACFM5C_000876"
     CDS             11169..12278
                     /locus_tag="ACFM5C_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase (NAD+)
                     activity, zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase [NAD(P)+] activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HFC6068616.1"
                     /translation="MKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDA
                     FTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVSSVKPGDHVIPLYTAECGECEFCCSGK
                     TNLCVSVRDTQGKGLMPDGTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEAN
                     HEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALES
                     AHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGVKGRSELPKMVEDSMKGD
                     IELEPFVTHTMTLDQINEAFDLMHEGKSIRAVIHY"
     gene            12287..13114
                     /gene="fghA"
                     /locus_tag="ACFM5C_000877"
     CDS             12287..13114
                     /gene="fghA"
                     /locus_tag="ACFM5C_000877"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011961786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046294 - formaldehyde catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HFC6068617.1"
                     /translation="MKLIEQHQIFGGLQQVWAHYAQTLQCEMKFAVYLPNNPENRPLG
                     VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDAAYDLGQGAGF
                     YLNATEQPWVTNYQMYDYILNELPSLIEEKFPTNGKRSIMGHSMGGHGALVLALRNRE
                     RYQSVSAFSPILSPSLVPWGEKAFSAYLGKNREKWQQYDADSLIRQGCKVQGMRIDQG
                     LEDEFLPTQLRTQDFIETCRAANQPADVRFHKGYDHSYYFIAGFIGEHIAYHAAFLK"
BASE COUNT         3459 a         3667 c         3058 g         3041 t
ORIGIN      
        1 tccgcaaaag cgaatcatac tgccacattc cggcaaccgg tttcagacag cgatatccgc
       61 atcgtcggcg acaacggcac ggatgctttc ttcgatttta tcttttaaag cataacggtc
      121 ttcgctttcc gccgcatccg ccacgcaaac gaaatcgact tttatcgtta attttttcat
      181 agacacaatg cgccacaggc aggtcggcaa accgacatcg gcatatgagg gacgagccgt
      241 cctttttccc gtttcgtcat aataacgcag cgcgaccgcc aaaacctttg cccccgcatc
      301 aatggcggat tggaacagcg cggctttgaa cggcaggagc cccagtccgg aggaagtccg
      361 cgcttcgggg aaaaaactga cgttttgacc gcgttgcaag gtttcgtaga cggcgcggtt
      421 aatcggttcg atgtcgcgcc gcgaattgcg gttgatgaac accgttcccg cgttctgccc
      481 catcttgccc aataccggcc agcttttgat ttcctgcttg gcgataaagc tgctcggata
      541 aaccgcgctc atcgcgaaaa tatccagcca ggacacgtgg ttggcggcaa ccaagacacc
      601 gttcggatgt tcgggtgcgg gcctgcccac ctccaatccg atatccaaag ccgtcagagc
      661 ccccctgccc aactcgatta ccgcccgatt gcgcgactcg gggcagccgc cgtcaatacc
      721 gcgcaggttt ttgccggttt tgaatagcca gaccgtcaag cggcacaagc ggcgcagacg
      781 tgtaaaaaat gaagctttat ttgaagacat gaacaattct ttcccgataa tcggtgtttg
      841 ttgttgaaac gttcggacgg cataccgata aaatgccgtc tgaaaccgtt ttccgcccta
      901 tttctgacaa ttcgggcagt aaaacgtgcc gcgctgcccc aaagtttctt tcacaaccaa
      961 accgccgcac tgggggcacg gctgattgtg ccgcccgtac accgtatatt cctgttggaa
     1021 gtagccgctt ttgccgtcgc tgtccacaaa atccctcaag gtactgccgc ccgtttcaat
     1081 ggcgcgccgc aacaccgctt tgacggtttc aaccaaaagc gcacactctt tctttttcag
     1141 acggttggca ggacggtggg gcgaaatgcc cgctctgaac aggctctcat tggcataaat
     1201 attgcccaca ccgaccacga ccgcattgtc catcagggca agtttgaccg cgcgcttctg
     1261 cgccttcagc ctcacataca gataatccgt gcaaaatgcc tccgacaaag gctccggccc
     1321 cagtttttcc aacagcggat gatgttcttc gattccctca taccaaagta tcgcgccgaa
     1381 ctttctcgga tcgcggtaac gcatgaccgt gccgtctgaa aacacaatat cgacgtgatc
     1441 gtgtctgtcc ggcctgccga tacgtccgtc cgacggcgta aaaatccgca agctgcccga
     1501 catccccaag tgaatcagca gcacgcccgt ttgaaagcgg ataagcaggt atttcgccct
     1561 cctgccgcag gacaacacct gccggccgga caaaatctcc cccaaatcgg gattaatctg
     1621 ccagcgcagc ttcaattggc gcaataccac ggcttccacc gttttccctt caatatgcgg
     1681 cgcgatgccg cgcaacgtcg tttccacttc cggcaattca ggcataaccc ctcccgacat
     1741 ttcttctgac agatgccgtc tgaaagacgg ctgtccctaa tccgcaatcc ttgccgcacc
     1801 cgccgcaagg gctttgccgc ccaaataccc gtcccacgcg ggcaggggcg ttacgcccgc
     1861 cgcccttttg accaaaacca gaccgtacac tgcggcacat tgcggccacc aacggtcgcc
     1921 cgccttttcc ataaactgcc aaaagcgtat ttgcccgagc gacgaaacgg gcggcagata
     1981 caccataaat ttcccaagtt caatatcgaa gccggcatcg gcaagcagcc ttttcaactc
     2041 gggcagcggc agacaaaacc gtttttccgg caggcgttcg ccgtcaaacc aacggctgaa
     2101 tccccagagc gaatacggat tgaaacccgt cagcatcaaa cgtccgcacg gtttcaatat
     2161 ccggtgcgct tccgacagga tttgcgaagg aacaccgcct tcaagcgtat gcggaaaaag
     2221 cagcatatcc gcagaaacat ccgccaaagc catattctcc gccgacatcg acatatctcg
     2281 cggcacacag acaacatctt cagacaggct cagccacgga ccgcccacct gaaccgcaca
     2341 cattcccgaa aaacggtatg aatctagata ccgcccgaag aagtcctgtt ccaattttgc
     2401 aacataccgc cccatcgccg tatcttcaaa ccatgcatcc atattgcgtc cgtttcaaac
     2461 agattgcctg ccgatattct attccaaaca gaatttctgt caaaaaacac atcggccgcc
     2521 cacttccgaa tccgcataaa gttcctgtaa aacttgacgc tttttcagtc aaacagtacc
     2581 atcggacgat aaaatatgtt tattccgccg atataaatca tgtccaaact caaaaccatc
     2641 gccctgaccg cgtcaggtct gtccgtttgt ccgggtttcc tatacgccca aaacacctca
     2701 tcacaccaaa tcggtttggc gattatgcgc ttaaactctt caatactcga cctgcccccg
     2761 acaaaacaat atttccaatc cggcagcctg tggagcgagc tgcgccaagg cttccggatg
     2821 ggcgaagtca atcccgaact ggtacgccgc cacgaaagca aattcatcgc aagccacagc
     2881 tatttcaaca gggtcatcaa ccggagtaga ccctatatgt accatatcgc caacgaagtc
     2941 aaaaaacgca atatgcccgc cgaagccgcc ctgcttccct tcatcgaaag cgcgttcgtc
     3001 accaaagcca aatcacacgt cggcgcatcg ggcctgtggc agttcatgcc cgctaccggc
     3061 aggcattacg gcctggaaaa aacaccggtt tacgacggca ggcacgacat ttacgccgcc
     3121 accgatgccg cactcaacta tctgcaatac ctctatggac tgttcggcga ctggccgctc
     3181 gcctttgccg cctacaactg gggtgaaggc aacgtcggac gcgccatcaa ccgcgcccgc
     3241 gcccaagggc tcgaaccgac ctacgaaaac ctgcgtatgc ccaacgaaac gcgcaactat
     3301 gtccccaagc tgctcgccgt gcgcaacatt attgccactc cccaatcttt cggtatgaat
     3361 atcagcgaca tagacaacaa accctatttt caggcagtcg aaccggatcg tccgctcgac
     3421 aacgaagcca tcgtccggct tgccggcatc acgcaaagcg agctgctcgc cctaaacccc
     3481 gcattcaacg tccccgcgtt tatccccaaa agcaaacgca aactgctgct tcctgtcgca
     3541 tccgtccaaa ccttccaaag caactacctc aacgccgcac ccgacagcct gttttcatgg
     3601 gaagtctata cgcctgccgc caaaaccagc ctgtccgaca tctcgacggc aaccggcatg
     3661 agcattgccg acatcaaacg cctcaacaac ctgaacggca accttgtcaa cgcaggacgc
     3721 agcatccttg tcgccaagaa cggcaaaacc cttcagacgg catcggaatc cgtcgtttcc
     3781 atcgacatcg acaatacgcc cgacacctac cgttccaata tgccggcagg cacggtgaac
     3841 gtcggcattg cccgaatccg acccgccgcc gcacagacag cggacattac cgtcgcacct
     3901 ttgccgcaga aaaccgtccg tacggaaccc gatccccttg tccgtattgc cgaacctgcc
     3961 cttgcgacag ccgcagcgca acctcaaacc gaaaaacaga ccgccatgcc gtctgaaacc
     4021 caaaccgcaa cactcgcgca gatcatcccc caaaacgaca tgcaggcggc agacgaactc
     4081 atgcagcttg ttgcccgaaa caacctgcgc cgacaggctg aagaaaccat ctccgccgtc
     4141 atcggcacgc ctgacacagt tgccgaacac aacatttcct catctccgca acataccgtt
     4201 gccgccgacg gcaaacgccg ggcacgtttg gaaacgcgcg tagccaaagc tgccgacggc
     4261 gaagccgaaa tctccccgct ccatgccagc atccaccgcg ttgtagaagg cgacaccctg
     4321 ttcaacattg ccaaacgcta caacgtcagc gtagccgacc tgattgtcgc caacaacatc
     4381 aaaggcaaca ccatccaaaa aggacaggta ctccgcctgg cgcaggcagc ccctgcccaa
     4441 acccgtattg aaaaagtatc ctacaccgcg cgcaaaggcg acaccttcaa aagtatcgcc
     4501 gcgcgcttca atatccatat cgacgacatc cgccggctca atcccaacct gaacaccatc
     4561 aatccgggac agagggtcaa actgattgga agctgattcg gatacggcac atgacaggac
     4621 tttctcagtc ctgtcttttt catcccacat ttcccatacc atcatgaaac ttatcaaata
     4681 cctgcaatat caaggcatag gaagccgcaa gcagtgccaa tggctgattg ccggcggtta
     4741 tgttttcatc aacggaacct gcatggacga caccgatgca gacatcgatt cctcatccgt
     4801 cgaaacgttg gatattgacg gggaagcagt aaccgtcgtt cccgaaccct atttctacat
     4861 catgctcaac aagcctgaag attacgaaac ttcgcacaaa cccaagcact accgcagcgt
     4921 attcagcctg ttccccgaca atatgcggaa catcgatatg caggcggtcg gcaggctgga
     4981 tgcagatacg accggcgtat tgctgattac caacgacggc aaactgaacc acaacctgac
     5041 ttcgccgagc agaaaaattc ccaagctata cgaagttaca ctcaagcacc ctgccggcga
     5101 aacgctttgc gaaaccctga aaaacggtgt cctgctccac gacgaaaacg aaacggttta
     5161 cgccgccgat gccgtattgg aaagcccgtc cgcattgctc ctgaccatta ccgagggaaa
     5221 ataccaccaa gtcaaacgta tggtcgccgc cgcaggcaac cgcgtgcaac accttcatcg
     5281 ccggcgattc gcacatttgg aaacagaaaa cctgaaaccc ggcgaatgga aatttatcga
     5341 ttgtccgaaa ttctaaaata acatccaaga attccattta tattcatcca catactcatt
     5401 aaatatatgg tttaacccaa tttaacgcaa aaaatcaatt tacgatataa tccatttgtc
     5461 tgagtaacgc ctgttcaagc aggcttatga gtaagacgtt ttccccgtaa tgtgttttgc
     5521 catctatact tctccccttg tatagatggt tttttatttc aaattccctc tctttcatca
     5581 ttattaaaat gctatcatta atgtgattaa caaaatttca tttccataca ccgatgtaga
     5641 agaataacaa attaatctat ttataaactc cgattcttcc tcatcgggtt atactcatca
     5701 gaaatactca ctgaaatata tgccttttac atggaaaatc actagacagt tgaaaaacaa
     5761 tcagtcaatt cctgttaaaa aacgcgtgta gaatttccgc tttatctcaa tcggacacgg
     5821 tttcaatatg tcttcccctt caaataccaa tcgtcaaacc tgatccagcc gattaaccta
     5881 tatcctgact gttgccggcg cgactgtcgg cttcggcgcg acgtggcgtt tcccgtattt
     5941 ggtcggtgaa aacggcggcg gcgcgtatgt gtttttattc tgtatcgcca tgctcgttat
     6001 cggcatcccg atgattttgg tggaaaacgt catcggacgg cgcaaaggcg tgaacgcgct
     6061 ggatgcgttc ggcggtccga tgaacggcaa acccattgct aaaatttgga aactggtcgg
     6121 ctggatgggg ctgctcggcg cgttcggcat catggcttat tacatggcac tcggcggctg
     6181 ggtaatcagc tatatcgtta atattattgg aggaaatttg aatatttcca gccccatcga
     6241 cggtgtggtt acaaaaggct tctttgccga acacattgaa acagcccttg ggaaattgcg
     6301 ttttatacgc tgctttttgt cgccgtgaac caatggattt tggtcaaagg cgttatcggc
     6361 ggcattgaaa aagcggcaaa atagctgatg ccgctgctgt ttttgttcct aatcgcgatg
     6421 gtcgtccgca acgttaccct tccgggcgca atggaagggg ttgctttcta tctgaaacct
     6481 gatttcagca agattaccgc cgaactgttc gtcttcgttt tggggcaggt attttttgcc
     6541 ctgagcctgg gtttcggcgt gatgattacc ttgtccagct atttggataa aaacgaaaat
     6601 ctggttcaga cggcagttat cacggcaatt accaatacca tcatcgccat acttgcgggc
     6661 tttatgattt tcccgtcgct cttcagcttc ggcgttgccc ccgattccgg cccgactttg
     6721 gtattccaaa gtttgccgat tgtgttctcg catatgtggg caggatctgt gttcgccgtc
     6781 attttcttct cgctgctcct gattgccgcg ttgacaactt cgctgaccat ttatgaagtg
     6841 ttgattacga ccattcagga aaaaaccaaa atccgccgta ccgccgcgat tacgattgta
     6901 ttggctgcca tcttcatttt cggcaacatc ccgtccattc tgagctatgg tccgtggaaa
     6961 gacgtttccg tgttcggcaa aaatattttc gatgccttcg actacatcag cggcaacatc
     7021 ttgtttatgc tgaccgcgct cggttccgcg ctgtttgccg gttttgtgat gaaggacgaa
     7081 gcgaaggacg aattgcttta taaaggcaac catacgacgg tcaatatttg gtttgcttat
     7141 gtgaaatatc ttgtgccgct ggtgattctg ctgattttcg tcagcaacct gttctaatct
     7201 gcagcaatcg atgccgtctg aaggtcatac ctctttcaga cagcattgcc ttgatgcccg
     7261 ccacaatacc cgcaacgccg gaatccgaac cggcttgccg gcttctgtcg gatgttttcg
     7321 ggcaggcggc gttccgtctg cttagacaat cgtcctttaa aacaggtaga atccgcccca
     7381 acgggaaaca catccttcag acggcaaaac ccatacccca aaccatcagg aatccccctt
     7441 atgaacagac aaaaagtcat cgccatcgac ggcccgggcg catcgggcaa aggcacggtt
     7501 gccgcccgcg ttgccgccgc attgggatac gattatctcg ataccggcgc actctaccgc
     7561 ctgaccgccc tatatgcaca aaaacaaggc gtgggatggc acgatgaaga aaacgtttcc
     7621 gaactggcaa aaaaactgcc cgccgtattt tcaggcagcc gcatcctgct cggcggcgaa
     7681 gacgtttcag acggcatccg gacagaagcc atcggcatgg gcgcatccgc agtcgcacag
     7741 ttgcctaaag tccgcgccgc cctgctgcaa cgccaacgcg attttctgac cgaaaaagga
     7801 ctggtcgccg acggacggga caccggatcg gtcgtcttcc cccaagccga acttaaaatc
     7861 ttcctgacgg cagaatccaa aatccgtgcc gaacgccgcg ccaaacaaat cggcatcccc
     7921 tgcgaaggtt tggcattcga gcgcatcctg tccgacatcg aagccagaga cgaggcagac
     7981 cgaaaccgca aggttgcccc cctgaaacaa caacccgatg ccctgctttt ggatacgagc
     8041 cgcctgacta tagaagaaac tgtaaaaaaa gtgcttgatt ggtatcgtaa agtttaaatt
     8101 ttcaggtata atcgcccgca ttatgtttca gacggcataa aaatccccca tatgccgtct
     8161 gaaaccttat ttacccgtct gccctgccaa ggacggcaga cacccaccaa cccaccccgc
     8221 accccttggc ggtgtaccga aaagagttat atatgtctat ggaaaatttt gctcagctgt
     8281 tggaagaaag ctttaccctg caagaaatga acccgggtga ggtgattacc gctgaagtag
     8341 tggcaatcga ccaaaacttc gttaccgtaa acgcaggtct gaaatcagaa tccctgattg
     8401 atgtagctga attcaaaaac gctcaaggcg aaattgaagt taaagtcggc gacttcgtta
     8461 ccgttaccat cgaatccgtc gaaaacggct tcggcgaaac caaactgtcc cgcgaaaaag
     8521 ccaaacgcgc tgccgattgg attgccctgg aagaagccat ggaaaacggc gacatcctgt
     8581 ccggcatcat caacggaaaa gtcaaaggcg gcctgaccgt tatgattagc agcatccgcg
     8641 cattcctgcc gggttctttg gtcgacgtac gtcctgtaaa agacacttct cacttcgaag
     8701 gcaaagagat cgaattcaaa gtgatcaaac tggacaaaaa acgcaacaac gtcgttgttt
     8761 cccgccgcgc cgttctggaa gccactttgg gtgaagaacg caaagccctg ctggaaaacc
     8821 tgcaagaagg ctccgtcatc aaaggcatcg ttaaaaacat taccgattac ggtgcattcg
     8881 ttgacttggg cggcatcgac ggtctgttgc acatcaccga tttggcatgg cggcgcgtga
     8941 aacacccgag tgaagtcttg gaagtcggtc aggaagttga agccaaagta ttgaaattcg
     9001 accaagaaaa acaacgcgtt tccttgggta tgaaacaact gggcgaagat ccttggagcg
     9061 gtctgacccg ccgttatcct caaggcaccc gcctgttcgg caaagtatcc aacctgaccg
     9121 actacggcgc attcgtcgaa atcgaacaag gcatcgaagg tttggtacac gtctccgaaa
     9181 tggactggac caacaaaaac gtacacccga gcaaagtcgt acaactgggc gacgaagtcg
     9241 aagtcatgat tttggaaatc gacgaaggcc gccgccgtat ctctttgggt atgaaacaat
     9301 gccaagccaa tccttgggaa gaatttgccg ccaaccacaa caaaggcgac aaaatctccg
     9361 gcgcggttaa atccattacc gatttcggcg tattcgtcgg cctgcccggc ggcatcgacg
     9421 gtttggttca cctgtccgac ctgtcctgga ccgaatccgg cgaagaagcc gtacgcaaat
     9481 acaaaaaagg cgaagaagtc gaagccgtcg tattggcaat cgacgtggaa aaagaacgca
     9541 tctccttggg tatcaaacaa ctggaaggcg atccgttcgg caacttcatc agcgtgaacg
     9601 acaaaggttc tttggttaaa ggttccgtga aatctgttga cgccaaaggt gctgttatcg
     9661 ccctgtctga cgaagtagaa ggctacctgc ctgcttccga atttgcagcc gaccgcgttg
     9721 aagatttgac caccaaactg aaagaaggcg acgaagttga agccgtcatc gttaccgttg
     9781 accgcaaaaa ccgcagcatc aaactttccg ttaaagccaa agatgccaaa gaaagccgcg
     9841 aagcactgaa ctccgtcaat gccgccgcca atgcgaatgc cggcaccacc agcttgggcg
     9901 acctgctgaa agccaaactc tccggcgaac aagaataagg ttgcagacat gacaaagtct
     9961 gagttaatgg ttcgtttggc agaagtgttt gccgccaaaa acggcacgca tcttctggca
    10021 aaagacgtag agtacagcgt aaaagtcttg gttgacacca tgactagatc gcttgcccga
    10081 ggtcaacgca tcgaaatccg cggtttcggc agcttcgatt tgaaccatcg tcctgcccgc
    10141 atcggtcgca atcccaaaac cggcgagcgt gtggaagtac ctgaaaaaca tgtaccccac
    10201 ttcaagcccg gtaaagaatt gcgcgagcgg gtcgacttgg ctttaaaaga aaatgccaat
    10261 taaaccttag catcaaaacg ccgctgttac gcggcgtttt ttctgtggtt taacttcatc
    10321 cgctgcttca ataccttgag ccaagcaagc aacggattag agcgtggatt tttttatagt
    10381 ggattaacaa aaaccagtac ggcgttgcct cgccttagct caaagagaac aattctctaa
    10441 ggtgctgaag caccaagtga atcggttccg tactatttac actgtctgcg gcttcgtcgc
    10501 cttgtcctga tttttgttaa tccactatat cattgcttac aatccgcttt ttaaacaaca
    10561 aatttttgat ttctattacg aacaggacaa aaatcctgct tattgcacta aaactaagcc
    10621 gtttcaggaa tttgcggcaa atttacggct tttaccgaac ctaatgcttt cgctttttgg
    10681 taaaacgcca atttgtattc aagcaaatct aaatagcgtt ttaattcggc aatttgacac
    10741 ttcacatttt ctatttgatt ttcaaacaag gaaaggcgtt cttcaatggt atcgtcgcca
    10801 atgacggtac attccgcaaa gcgtttgatg tcttttaagc tcattcccgt atttttcaag
    10861 cattgcaata agcccaacca ttgcaaatcg ttatcggtaa aacagcggtt accgtattca
    10921 tcacgtccga tattaggcaa caagccttct ttgtcgtaaa aacgtagggt gtgggcggag
    10981 atgcctattt tttcggcggc tttggcagtg gtataagtca ttttccctcc ttctaaacaa
    11041 aaacagtaaa aaacacttgc cttagagtta actctaaagt gtaaactgtt gctatgttgc
    11101 tcaggtaagg caactttgtc aatgaattaa gaggaaagac aatggaaatg aaacaaaccg
    11161 attcaaccat caaatctcgt gcggcggtgg cattcgcccc taaccaaccc ttacaaattg
    11221 tggaaatcga cgtagaaatg ccgcgtaaag gcgaggtgtt aatccgcaat acccacactg
    11281 gcgtgtgcca tactgatgcg tttacgttat caggaagcga tcctgaaggc gtattccctg
    11341 tggtgcttgg acacgaaggt gcgggtgtgg tcgttgctgt gggcgaaggt gtgtcaagcg
    11401 taaaaccggg tgatcacgtg attccgcttt acaccgccga atgtggcgaa tgtgagtttt
    11461 gttgttcagg taaaaccaac ttgtgcgtct cagtgcgtga tacacaaggt aaaggcttaa
    11521 tgccggacgg cacgacgcgt ttttcttatc aaggtcagcc aatctatcac tatatgggct
    11581 gttcgacttt cagtgaatac tccgttgttg ccgaagtttc actggcgaaa atcaaccctg
    11641 aagccaacca tgaacaagta tgtttgctcg gctgcggcgt taccacaggt attggtgcgg
    11701 tacataatac ggcaaaagtg caagaaggcg actctgttgc cgtgtttggc ttaggcgcga
    11761 ttggtttggc ggtggtgcaa ggtgcgcgtc aagccaaagc cggccgtatt atcgccattg
    11821 ataccaatcc cgcaaaattc gagttggcaa aacagtttgg tgcaaccgat tgtttgaacc
    11881 cgaacgatta cgataaaccg atcaaagatg tgttgttaga catcaacaaa tggggcatcg
    11941 accacacctt tgaatgtatc ggcaatgtaa atgtaatgcg tcaggcatta gaaagcgcac
    12001 accgtggttg gggacaatcc attatcatcg gcgtagcggg tgctggccaa gaaatttcca
    12061 ctcgtccgtt ccagttggta accggccgtg tttggaaagg cactgcattt ggcggcgtga
    12121 aaggccgctc cgagcttccg aaaatggtgg aagattcaat gaaaggcgac atcgagttag
    12181 aaccgtttgt gacccacaca atgacgctcg atcaaatcaa tgaagccttt gatttaatgc
    12241 atgaaggtaa atcgatccgc gctgttattc attactaagg tacgcgatga aactgattga
    12301 gcaacatcaa atttttggcg gtttgcagca agtttgggcg cattatgccc aaacgctgca
    12361 gtgcgaaatg aaatttgccg tctatttgcc aaataatccg gagaatcgac cgcttggtgt
    12421 gatttattgg ctttccggct tgacttgtac ggaacaaaat ttcattacca aatcaggttt
    12481 tcagcgttat gcggcagaac atcaagtgat tgtggttgcc cccgatacca gccctcgcgg
    12541 agagcaagtg ccgaacgatg cggcttacga tttagggcag ggtgcgggct tttatctgaa
    12601 tgcgaccgag cagccttggg tgacgaatta tcaaatgtat gattatattt tgaatgagtt
    12661 gcctagtctg attgaggaaa aatttcctac caacggcaaa cgttccatta tgggacattc
    12721 aatgggcgga catggcgcat tggtattggc actgcgaaac cgggaacgtt atcaaagtgt
    12781 ttctgccttt tcgcctattt tatcgccaag cctcgtgcct tggggagaaa aagccttttc
    12841 tgcctatttg ggaaagaatc gcgaaaaatg gcagcaatat gatgccgact cgctcatccg
    12901 acaaggctgt aaggtgcaag gtatgcgcat tgatcagggc ttggaagatg agtttttgcc
    12961 gacacaattg cgtacccaag attttatcga aacctgtcgt gcggcaaacc aaccggccga
    13021 tgtgcgcttc cacaaaggct atgatcacag ctattacttc atcgccggtt ttattggcga
    13081 gcatattgcc tatcacgcgg catttttgaa gtaagccaaa gagcgttcag tgttcaaagc
    13141 agttttggga tagccggcac gagggcggta agaagtgccg gcataaacgt atgccgtctg
    13201 agccggaaga agccgactct acgga
//
LOCUS       DAXHNP010000042        13191 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.042, whole genome shotgun sequence.
ACCESSION   DAXHNP010000042 DAXHNP010000000
VERSION     DAXHNP010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13191
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.042"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            181..779
                     /locus_tag="ACFM5C_000878"
                     /pseudo
     CDS             181..779
                     /locus_tag="ACFM5C_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751227.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            complement(768..1115)
                     /locus_tag="ACFM5C_000879"
                     /pseudo
     CDS             complement(768..1115)
                     /locus_tag="ACFM5C_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255955.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
     gene            1426..2178
                     /locus_tag="ACFM5C_000880"
     CDS             1426..2178
                     /locus_tag="ACFM5C_000880"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFC6068618.1"
                     /translation="MITLPSLNNLPSKWDEIRYWLETRVCECGVMPHPNLTECEAGQF
                     DRDFWDNIGCAPEEYVRIRRAIRLLEARYPDSLNELVCAAIATPLGEMLAVFGNKGLC
                     LLEFVGQKHMEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQI
                     GTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPNAVRAVAAANGQNKVSILIPCHRVI
                     GSDGKLTGYAGGLNRKQFLLALERGEVQTALF"
     gene            2369..2444
                     /locus_tag="ACFM5C_000881"
     tRNA            2369..2444
                     /locus_tag="ACFM5C_000881"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2402..2404,aa:Asn,seq:gtt)
     gene            2575..3585
                     /gene="waaF"
                     /locus_tag="ACFM5C_000882"
     CDS             2575..3585
                     /gene="waaF"
                     /locus_tag="ACFM5C_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFC6068619.1"
                     /translation="MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSM
                     AVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALAT
                     GIAKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSID
                     ERRREISVETFGLNLGKPVLAFCPGAEFGPAKRWPTRHFAELGKHYLAAGWQVWLFGS
                     QKDDEIAEEINCLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKV
                     VAVYGSSSPTHTPPLSDKAKIVSLHLECSPCFKRECPLGHTDCLNKLYPEKIVQAVEE
                     AV"
     gene            3640..4086
                     /gene="smpB"
                     /locus_tag="ACFM5C_000883"
     CDS             3640..4086
                     /gene="smpB"
                     /locus_tag="ACFM5C_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFC6068620.1"
                     /translation="MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESY
                     IYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVP
                     LDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR"
     gene            4452..6494
                     /locus_tag="ACFM5C_000884"
     CDS             4452..6494
                     /locus_tag="ACFM5C_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HFC6068621.1"
                     /translation="MYYETRSKQASKQKFKKSFIISLFFSILYTSPLLAVDYVYDNSK
                     LTNEQIDRLKKLRDKSSEYWKQETYLLKPTNGSSQNSLKVPALYSKTHQFKNINNSKK
                     ISFYDKEYTEDYLVGFARGFGVEKRNGEEEKTLQQYFKDCVNTGNSNNDKCEQPSFEN
                     SGPRLIKSDIFALAPQIKNSHINSEILSVGNYIEWLRPTLNKLPSWQEHLYSGLDPFH
                     YIEVTDNSHVIGQTISLDEFRLENSLWEPRWDSDVGELKTTNADIRFNTKSESLLVKE
                     DYAGGARFRFAYDLKDKVSETPVLTFEKNITGTSDIIFENPIDDLKSLDGHQIIKVNG
                     TADKHAFRLSGKHQKGIYTLSLQQRPEGFFTKVQERDDISIYAQQAQAANTLFALRLN
                     DKNSDIFDRTLPRKGLWLRVIDGHSNQWVQGKTAPVEGYRKGVQLGGEVFTWQNESNQ
                     LSVGLMSGQAEQRSTFRNPDTDNLTTGNVKGFGAGIYATWHQLQDKQTGAYADSWVQY
                     QRFRHRINTEDATERFTSKGITASIEAGYNALLAEHFTKKGNSLRVYLQPQAQLTYLG
                     VNGKFSDSENAHVNLLGSRQLQTRVGVQAKAQFSLYKNIAIEPFAAVNALYHNKPFGV
                     EIDGERRVINNKTAIESQLGVAVKIKSHLTLQASFNRQTSKYHQAKQGALNLQWTF"
     gene            complement(6675..8042)
                     /locus_tag="ACFM5C_000885"
     CDS             complement(6675..8042)
                     /locus_tag="ACFM5C_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HFC6068622.1"
                     /translation="MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRS
                     VESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCIT
                     VEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIG
                     LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAW
                     VGIPDIESAVRLLTETQAHFAERLCSFELVGRFAAELSSEFSKFPLPTHSEWHILLEL
                     TDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHD
                     IAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYEN
                     DINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNP
                     GKLLP"
     gene            complement(8152..8433)
                     /locus_tag="ACFM5C_000886"
     CDS             complement(8152..8433)
                     /locus_tag="ACFM5C_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068623.1"
                     /translation="MKKSLFAAALLSLVLAACGGEKAAEAPATEAPAAEAPATEAPAA
                     EAPATEAPAAEAPAAEAAATEAPAAEAPAAEAAATEAPAAEAPAAEAAK"
     gene            8907..9389
                     /locus_tag="ACFM5C_000887"
     CDS             8907..9389
                     /locus_tag="ACFM5C_000887"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6068624.1"
                     /translation="MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLV
                     EEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGD
                     VVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
                     "
     gene            9476..10288
                     /gene="hpnC"
                     /locus_tag="ACFM5C_000888"
     CDS             9476..10288
                     /gene="hpnC"
                     /locus_tag="ACFM5C_000888"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HFC6068625.1"
                     /translation="MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMP
                     SEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDV
                     VKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
                     VDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARE
                     LKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKRALWK"
     gene            complement(10359..10829)
                     /locus_tag="ACFM5C_000889"
     CDS             complement(10359..10829)
                     /locus_tag="ACFM5C_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HFC6068626.1"
                     /translation="MYDVNTHDVRRFFARVWQQRLNPLQLSALEQKALRIVEAHPEYH
                     RYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGW
                     LEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAEDQARLNPHEIA"
     gene            10920..12761
                     /locus_tag="ACFM5C_000890"
     CDS             10920..12761
                     /locus_tag="ACFM5C_000890"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HFC6068627.1"
                     /translation="MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKA
                     FVPELAVADDGVNVRFKIADGYYMYQAKIVGKTDPADLLGQPSFSKGEEKEDEFFGRQ
                     TVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEAGVCYPPVDTEFDISGNGTYHPQTDE
                     PASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTA
                     CMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQ
                     QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSA
                     LIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPKAGD
                     WMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKA
                     VAFALGSILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKA
                     AMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANTP
                     EHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR"
BASE COUNT         3237 a         2915 c         3680 g         3359 t
ORIGIN      
        1 acgccgacgg aatatggttg aaacccggcc cttctgggcg atgggatttt ggtttatttt
       61 ttgggaagta accccttcca aatcagggta aacagggctg tgccttatgt gcggccctgt
      121 gtgttgaaac attgaggaat ataaccgtgc cgtcaaatta ctttatatac gcgcggacga
      181 ttgggtgctt tgggcggcat cgtgcaacat cataccgcct tgtaccgcag cgtggcggta
      241 tatgaaccgg ctgtgcttat cgtgcggcgc ggaagtaaga agctgcggcg ggtgaggcgg
      301 tcgcgttggc aggcggacag acgtttgacg ttattaatat tcccgatcta gacggcctct
      361 atcaggcgca atggattgct ttcgaacagg aaaccgtaga aaggttcgcc gcacaatacg
      421 ggacggcgca ggcagtgtgc gatgcggtga agctgccgca ccccgggcgg atgggcgcgg
      481 cgtttgatta tgcggcggcg gtgctgacgg atgaagaagt gccgcacaat gcggcggagg
      541 tcgcgctttg cggcgtgttg gcgtggttgc agcatgacgg catcggtttt gccgtgtacg
      601 aaggcgtcaa cctgatgcgg caaatccgca aactgattac cgccgatatg gctgcggact
      661 ggtcgtcggc gatgttggcg cagcggctta attgcagcga ggccgcgttg cggcggcgga
      721 catcggcggg aatgtcggcg accacccagt gcatccagcc cagtccggtc ggcgatgttg
      781 gcgcagcggc ttaattgcag cgaggtcgcg ttgcggcggt ggacatcggc gggaatgtcg
      841 gcgaccaccc ggtgcatcca gcccagtccg gtcggcgcgt ctttatcgta aacggtcagg
      901 acgaaacttt ttgtcccggc gggcggattt ttccacgaca gcgcgggcga agcattgccg
      961 cccgaacagc caaatccgta aggcgcgctc aaaagctggt tttgcgtgaa gccgccgtct
     1021 tcggacgggt tgtcgaattg cagcgtgaat gcgcccccgg caaaggcagc ggttgaaaaa
     1081 gccagcagta cggcggagag aatgcgggtt tgcatagacg gttcctttgc ttgatgaata
     1141 agtggattca ttataggctg tcaacggcgg caggaatgtg ccgaaacggt tggatgatgt
     1201 gccggaatgc gcaaatgcaa aaatcgtggt ttcagacgag cctttgcagg tcgtctgaag
     1261 tctttaattc ctttccctga ggctttagaa atatcgaata tttaggtatt gccgcaacct
     1321 aaccctcaag atttacgtca tagcccgttc ctgctccggc gtgcgggaat ggcaaaaatt
     1381 ggggattttg ccgccaaatc catgatagag atacggagca aacgaatgat taccctgcct
     1441 tccttaaaca atctgccgtc aaaatgggat gaaatccgct attggctcga aacccgggtt
     1501 tgtgagtgcg gcgttatgcc gcatcccaat ttgacggaat gcgaagccgg gcagttcgat
     1561 cgggattttt gggacaatat cggctgcgcg cctgaagaat atgtccgtat ccgccgagcc
     1621 atccgtctgt tggaagcgcg ttatcccgac agtttgaatg agctggtgtg tgccgccatt
     1681 gccacgcctt tgggcgagat gctggcggtg ttcggaaata agggattgtg tctgctggag
     1741 tttgtcggac agaaacatat ggagcaggaa attgccgccg tccaaaaagc cttgcgcgga
     1801 cggtttgtgt ttcgggagga tgagcggacg caacttttgc ggcaggaatt ggacttatac
     1861 ttcaagggtc gtctgaaaac ctttgccacg cctttggagc agattggcac cgagtttcaa
     1921 aagcaggcat gggacgcgct cttggcgatt ccttacggcg aaacgcgcag ctacaaagag
     1981 caggcgcagc gtttgggcaa ccccaacgcc gtccgcgccg ttgccgccgc caacgggcag
     2041 aacaaggtgt ctatcttgat tccctgccac cgcgtcatcg gcagcgacgg caaactgacc
     2101 ggctacgcgg gcgggttgaa ccgcaaacag tttttactgg ctttggaacg cggcgaagtt
     2161 cagacggcat tgttttaagc gggggagggc agaacggctc atcgggctta aatatggtgt
     2221 gatgacggct gtggaaattc atacaacggc aatcctttta aggcatcggt cttaatgtct
     2281 ttctgattca tatgcttgtc gttttgtcgc ccatttttcc aaaattaagg attgacacat
     2341 tttttccgga cgctataata cgccccattc cccgatagct cagtcggtag agcgacggac
     2401 tgttaatccg caggtccctg gttcgagccc aggtcgggga gccagaattt tgaagcccga
     2461 acttgaatgt tcgggctttt tcatatttgc acgtacggcg ttcggaatgc ggcaagatag
     2521 gttttccaac ggtttcgcgg taaaattctg cctgtctgat ttcggtttct tgttatgtcc
     2581 atcaaaatcc tgattatttc tcccagttgg ataggcgact gcgtgatgac ccagcccttg
     2641 ttccgccgtt tgaaggaact tcaccccggt tgcacgattg atgtgttcgc accgaagtgg
     2701 tcgatggcgg tgtttgagcg tatgccggaa gtgaatgaga ttcttgaaaa tccgttcgga
     2761 cacggtgcgt tggagttgaa acgccgctgg cgggtcggca gggatttggg gcggcgcgga
     2821 tacgatcagg ttatcgtgtt gcccggttct ttgaaatcgg cagtcatcgc gctagcaacg
     2881 ggtattgcca aaaggacggg ttatgtcggt gaaagccgtt attttctgtt gaacgatata
     2941 cgcaggctgg ataaggaacg tctgcctttg atggtggaca gatatacggc tctcgcgcat
     3001 ccgagtcagg aagattttga cgggcattcg ggattccccg agttttccat tgatgaacgg
     3061 cggcgggaaa tttctgtcga aactttcggt ttgaatcttg gaaagcctgt tttggcattt
     3121 tgcccgggcg cggaattcgg gccggcaaag cgttggccga caaggcattt tgccgagttg
     3181 ggcaaacatt atctggcggc gggttggcag gtttggctgt tcggttcgca aaaagatgat
     3241 gaaattgccg aggaaatcaa ctgcctttca gacggtatgt gtgtgaattt atgcggaaag
     3301 accgatttgt cgcaggcaat ggatttgctg tcgttggcgg acacggtcgt gtgcaacgac
     3361 agcgggctga tgcacttggc ggcggcattg ggcaggaagg tggtggcggt ttacggttct
     3421 tccagcccga cacacacgcc gcctttgagc gataaggcaa aaatcgtcag cctccatttg
     3481 gaatgttccc cgtgttttaa gcgggaatgt ccgctagggc atacagactg cctcaacaag
     3541 ctgtatcccg agaagattgt gcaggcggtt gaagaggcgg tatgatgggt tctgttttcg
     3601 ggtttatgcc gtctgacggc ggatattgat aggatgttta tggctattgc gaacaataaa
     3661 aaagcatttc acgatttttt cattgaagac cggattgaag ccggtttggt cttggaaggc
     3721 tgggaagtca aagcaatccg cgccgcgcgc gtacagctta aagagagtta tatctattgg
     3781 aaaaaagacg cgttttatct ggtcggctgc catattacgg ctttgcccac agcctcgaca
     3841 cacattaaac cagatgccgt acgtccgcgc aagctcttgt tgaaccagtc ggaaatcaac
     3901 aaattaatcg gcaaaaccga acgtgccggc tacaccatcg tgccgctgga tttgcatttt
     3961 tcgcgcggaa aaatcaagat ggaaatcggt ttggcaaaag gtaagaaaca gcacgacaaa
     4021 cgtcagagta tgaaagaggc ggattggaaa cgcgagaaac agcggttgat taagcatacg
     4081 cgctgattgt ggaaacagtg cttcagacgg tatgggcaag gctgccgcct gatgtgtaaa
     4141 cgttctacac ctaaaccaga atccgcttta atcagcacag catgatgccc caaaccttca
     4201 tcaaaggttt gagcaatttg atgataaatt ggcattagcc aagggtaaag tgcggtcatt
     4261 tttcctgaaa tttttgtaaa taacgagggc aattatacac attttcaaac tggcttgaca
     4321 aaatagcaaa aagcaaacgt ttacctttaa taaataagaa ataaatagag aaaaatgtga
     4381 gctaaatgac attttttgtt cagttttatg ctaaaatcca cgccccattt atttttactt
     4441 gacaaaggaa aatttattat gaaactcgaa gcaagcaagc aagcaagcag aagtttaaaa
     4501 aatcatttat tataagtcta tttttttcta ttctttatac ctctccgctt ttggctgttg
     4561 attacgttta cgacaattct aaattaacaa atgagcaaat tgatcgctta aaaaaactta
     4621 gagataaaag cagcgaatac tggaaacaag aaacttatct tctaaaaccg acgaatggta
     4681 gctctcagaa ctctctcaaa gttcccgcac tatactctaa aacacaccaa ttcaaaaaca
     4741 tcaacaactc aaaaaagatt tctttttatg acaaggaata cactgaagat taccttgttg
     4801 gcttcgcccg aggtttcggg gttgaaaaaa gaaatgggga agaagaaaaa acactccagc
     4861 aatattttaa ggactgtgta aatactggga attccaataa tgataagtgt gaacaaccat
     4921 ccttcgaaaa ctctggccca agattaataa agagcgatat tttcgcctta gctccacaaa
     4981 taaaaaatag ccatatcaac agcgaaattt tatctgtagg taattatatc gaatggcttc
     5041 gcccaacact taataagctt cctagttggc aagagcatct ctattctggt ttagatccat
     5101 tccactatat tgaggttaca gacaactcac acgttatcgg acaaacaatt agtttggatg
     5161 aattccgctt agaaaattct ctctgggaac cccgttggga ttctgatgtt ggggaattaa
     5221 aaacaacgaa tgcagacatc cgttttaata ctaaaagtga aagtttactc gtaaaagaag
     5281 attatgctgg cggagctcgt tttcgttttg cttacgatct aaaagataaa gtctctgaaa
     5341 caccagtttt aacttttgaa aaaaatataa ctggcacttc cgacatcatc ttcgaaaatc
     5401 caatagacga tttaaaaagt ctcgacgggc atcaaattat caaagtaaat ggcacagcag
     5461 ataaacacgc attccgtctt tctggcaaac accaaaaggg aatttatacg ctttctttac
     5521 aacaacgccc agaaggcttt tttaccaaag tgcaagaacg cgatgatatt tcgatttatg
     5581 cacaacaggc tcaagccgcc aataccttat tcgccttgcg tttgaacgac aaaaacagcg
     5641 atatttttga ccgcacttta ccacgcaaag gcttgtggtt gcgtgtgatt gacggacatt
     5701 ccaaccaatg ggtgcaaggc aaaacagcac ctgtagaagg ctatcgtaaa ggtgtgcaac
     5761 tcggtggcga agtattcaca tggcaaaacg aaagtaatca actttccgtt ggcttaatga
     5821 gcggacaagc agaacaacgc agcactttcc gcaatccaga tacagacaat cttacaacgg
     5881 gaaatgtgaa aggctttggg gcgggcattt atgccacttg gcatcagctt caggacaaac
     5941 agacaggtgc gtatgcggat agctgggtac aatatcaacg cttccgccac cgcattaaca
     6001 ctgaagatgc tacagaacgt tttacttcaa aaggtattac cgcctcaatt gaagcgggtt
     6061 acaatgcttt attggcagaa cacttcacta aaaagggcaa cagccttcgt gtttacctac
     6121 aaccacaggc acaattgact tatttggggg taaacggaaa attcagcgat agcgaaaatg
     6181 cccacgtgaa tttacttggc tcccgccaat tacaaactcg ggttggcgtt caagctaaag
     6241 ctcaattttc actctataaa aatatcgcta ttgaaccttt cgccgctgtg aacgcgcttt
     6301 accacaacaa acctttcggt gtggaaatag acggagagcg tcgagtgata aacaataaga
     6361 cggcaattga gagccaatta ggtgtagcag tgaaaatcaa atctcactta actttacaag
     6421 cctcattcaa ccgccaaaca agcaaatatc atcaggctaa acaaggtgcg ttgaatttgc
     6481 agtggacgtt ttaagttaag ttgtaacaaa ataaaatcgg cagggaaatt cactgccgat
     6541 ttttttattt taaaaatgcg gtcatttttc gtgtcatttc caccaatttt ttaccgcact
     6601 cacgagctcg cgctaaaccg acaatcggat ctattgtccc tttctttgtt gtgtatgcaa
     6661 atcagaaatg ccggttacgg aagcagtttg cccggattca taatgttata tggatcaagg
     6721 tgttgtttga tgcttttcat cagggcgatt tcggcaggcg tgcgtacttt gtccagccac
     6781 tgttttttga tgatacctat gccgtgttcg gcggcaatcg tgccgttgca ggcaagaacg
     6841 ttgcgataaa ctgcgtcgtt gatgtcgttt tcgtaacgat agacttcatt gctgaggatt
     6901 tcgggcagga aagtattgta gtgcaggctg ccgtcgccaa gatgtccgaa gcagacgatt
     6961 tgtatgcctt taaaattctg ttccaaatct ttggcgcacc ggcggacaaa gtcggcaacg
     7021 cgtccgatag gaatggcaat atcgtgtttg atgctggtgc ccagtttgcg ttgcgatgcg
     7081 gagatgtttt cgcgcaatgc ccacatatgg atacgttctt gttcgctttg tgccaatacg
     7141 ctgtcggtaa atcctttttt ataaagaaat tcgacaagcc gatcatcaag attgctgtcg
     7201 ggtaatgagt cggtcaactc aagtaaaata tgccattctg aatgtgtcgg cagggggaat
     7261 ttgctgaatt cggaagacaa ctcggcggca aaacggccga ccagttcaaa actgcatagg
     7321 cgttcggcaa agtgagcttg ggtttcggtc agcaggcgga cggcggattc gatgtcgggt
     7381 atgccgaccc atgccgttgc cttgtccgag ggacgggcaa aaagcttgag tgtggcggca
     7441 gtgatgatgc ccagtgtgcc ttcgctgccg ataaacagat ggcgcaggtc gtagccggtg
     7501 gtgtttttat gcaggggatg gagatgggaa accagctcgc cgttggggag gacgacttcc
     7561 aaaccgataa tcaggtcgcg catcgtgccg taacgcaata cgttcaaacc tccggcattg
     7621 caggcgatgt tgccgccgat ttgacaggag ccttcgctgg cgagactgag tgggaacagc
     7681 ctgtttgagg cttcggctgc ctgttggacg gtttggagta cggaacctgc ttcgacggtt
     7741 atgcagttgt ctgacaaatt gatgctgcgg atgcggttga gtttggaaag gttcagcaat
     7801 acgccgtttt ccgatactgc cgcgccgcac aaaccggtat tgccgccttg cggcgtaacc
     7861 ggaatacggt gttcgtaaca aaaacgcata atggtttgca cgctttcaac gctgcgcggc
     7921 tgcaaaatga tgtctggtgc agacgtaaag cggttgcgct ggtcttttaa aagcgtcgga
     7981 gaaagttcgg caatttcatc tgccggcagg agtcgggaaa attcggtatg aaggtcaggc
     8041 atgtttgtcg gaagggtagg gagaagattg aggaagggaa tctgatgccg tctgaaaaat
     8101 caaaaaagca ggatactgaa cgtatcctgc ttttttgcaa gcggaaaatg cttattttgc
     8161 agcttcggca gcaggagctt cagcggcagg tgcttcggta gcggcagctt cagcagcggg
     8221 agcttcggcg gcaggtgctt cagtagcggc agcttcagca gcgggagctt cggcggcagg
     8281 tgcttcggta gcgggagctt cggcggcagg tgcttcagta gcgggagctt cagcggcagg
     8341 tgcttcggta gcgggagctt cagcggcttt ttcaccgccg caggctgcca ggaccaaaga
     8401 caacaaagca gcggcaaaca gggatttttt cattttagta acctttagaa ccaatttaaa
     8461 ttattgaaac aaataggtct tttatcgacc atactacaaa ccgggttgga aattcatcgc
     8521 tgaatttgcg taattatgca ctatggaata agggattgca atgtcgtaca gatgggaaaa
     8581 aggtttgaat gaaaagtttt ctggcgggcg gattgataaa tcctgtaaaa cggttttgct
     8641 gttaaaaatt cgatagggat aaatattata gagattaata taatttcagt atcttgtatg
     8701 atttattaag gcggattggg aaagtcggca gacaggtcgg aatggtttta agaatgttgt
     8761 aaaaaagtta caccgcaata aaataacaaa aatttacatt gaaatatgtg ctgtacagtt
     8821 tatgaacagg ttaacggtaa tcggccggcg cggcggttgt gttagaatgc gcctgtaatc
     8881 aatctgctgt tcctgaaagg acaaatatgg ctatcgtgaa aaattccgtg gtttcgctgc
     8941 attatgagat gtatgatgcc aacaatcagc ttttggacaa aaccgaagaa ccgattgcgt
     9001 atctgcacgg cggttacgac ggcattttcc ctttggtgga agaggcgttg cacggtaagg
     9061 atgccggcga tacggtcgat gtggcgctgt cgcccgacga tgcgttcggc gagcaggatc
     9121 cggagttggt ccgtatcgaa gatgcgggcg tgttccctgt tgaagtcgaa gtcggcatga
     9181 tgtttgaagc cgacgatcct gaaaccggcg atgttgtcgt ctatcgtgta accgatgttg
     9241 ccgacggcaa ggcggtggtg gacggcaacc atcctttggc aggcatgaaa atccgcttta
     9301 aggctacggt tgaaagcgtg cgcgatgcat ccgatgagga aatcgcacac ggtcatgtcc
     9361 acggcccgca cggtcatcac caccactgat tgccggcagc ttggaggtat ctgatgccgt
     9421 ctgaaaaggg tttgttccgt ttcagacggc attttgtttg atggatggag aaggtatgtc
     9481 ggttgggcat tatgaaaatt ttcccgtcgg ttcgctgatt ttgccgcgca ggttgaggaa
     9541 gccggttcat gcggtgtatg cgtttgcacg gacggcggac gatatggcgg acgagggcag
     9601 tatgccgtct gaagccaggt tggcggggtt ggagggtttg cagcgcgagt tggacgtgtt
     9661 ggcatcgggc ggccggtcgg cgcatccttt gattgcacga ttggatgccg aggcggttgt
     9721 gccgttcggt ttggatttgc agccgtttta tgatttgctt tctgcatttt ctcaggatgt
     9781 ggttaaaaca aggtatggaa atttcggcga gctggccgat tattgccgac gttctgccaa
     9841 tcctgtcgga cgcattatgc tggctttgta cgggaaaacg gatgcggtgt gcgtggcgca
     9901 aagcgacggc atctgtacgg ctttgcaact ggtgaatttt tggcaggatg tggctgtgga
     9961 ttggcaaaag ggcagggttt atattccgca ggacgatttg ttgaaattcg gtgtttccga
    10021 aggacagatt gcggagggta gggcggatgc ggcgtttcag cggctgatgg cgtatgagtg
    10081 ccggcgcgca tttcgtatgc tgaaggcggg ttcgccttta gcgcgcgaat tgaaagggcg
    10141 tatcggtttg gaactccgta tgattgtgtt aggggcgcag ttgattttgc agaaactgga
    10201 cgcgtgccga tacgatgtgt ttgcacaacg ccccgttttg gataagaagg attggttgat
    10261 tatgctgaaa cgcgcgttgt ggaaatgatg ggggaaatgc atgccgtctg aaaggggttg
    10321 ttccgcttca gacggcattt tgcaggcggt tggtatggtc aggcgatttc atgtgggttc
    10381 aacctggctt gatcttctgc acccaagccg atgagtttgc gcagtcgggt catgtagaaa
    10441 ttgacatcca aaccggtgcc gtagcgttgc gccgtccaca gtgtttccgc cagtgcctcc
    10501 atcatttcgt gttcggcttc cagccagccg cgtttggcgc acagggtgtc gtggattgcg
    10561 cgtatgccgt gcggctggtc tatgcccgcc tgttcttgga cggacagatg cagcgacata
    10621 tgcaggaagg ggttgctttc gccgttttcg ggcagccagt cggtgtccag atggtcttcg
    10681 atgcgttcga gatagcggtg gtattcggga tgggcttcga caatgcggag ggctttctgt
    10741 tccagtgcgc tcagttgcag cggattgagc cgctgctgcc acacgcgggc gaaaaagcgg
    10801 cggacatcgt gggtattgac atcgtacatg gcgggttcga taagatggtt atggaaatag
    10861 gttcggataa tggcgggttt tacataaatt aaatcccacc gtcaacctta ccatttataa
    10921 tgcagacaaa ttatttgtct gaaacggatt cgattatgaa aaaactgatt tgcctgttcg
    10981 ccgtattttt gatgttgtgc ggacgagctt tcgcgctgga tgcgaacgat ctgctgccgc
    11041 cggaaaaggc attcgtgccg gagcttgccg ttgccgacga cggtgtgaac gtccgtttca
    11101 agattgccga cggatactat atgtatcagg cgaaaatcgt cggcaagacc gatccggcgg
    11161 atttgttggg acagccttct ttcagcaagg gcgaagagaa ggaagacgag tttttcggca
    11221 ggcagacggt ttaccatcac gaagcgcagg ttgcctttcc ttatgcaaag gctgtcggcg
    11281 aaccgtataa attggttttg acctatcagg gctgtgccga agccggcgtg tgctatccgc
    11341 ccgtggatac cgagtttgat atttccggca acggcactta ccatccgcaa accgacgaac
    11401 cggcatccgc caaagaccgc tttttgcagc cttcctctca aaacggcagc ggggcgctgc
    11461 cgcccccgaa gggggatgag ggcggcgaca gccgtttcaa gctgtcttgg gatacgctca
    11521 acgccaatct tttggcgttt tttctcgccg gtttgggtct gagttttacc gcctgtatgt
    11581 atcccctgtt gccgattgtt tccagtattg tggtcggcga caaaaaggcg ggcaaggcgc
    11641 gggcgtttgt gctgtccgtc gtttatgttc agggtttggc tctgacttat acgctggtcg
    11701 gcattgttgc cggactgacg ggcgcactgc tgaccgtatg gttgcagcag gcttgggtcg
    11761 tgttggcggc atcggctttg atggtcgtct tggcactgtc tatgttcggg ctgttcaaca
    11821 tccagcttcc caacgccgtg cagtcgtatt ttcagaatca aagcagcagg ctttcaggcg
    11881 gtaaaatcgt ttccgtcttt attatgggca tattgtccgc gctgattgtc gggccgtgcg
    11941 tcgccccgcc gctggcattt gctttgggct acatcggtca gacgggcgat gcggttttag
    12001 gcggtttggc actttacact ttggcgttgg gcaccggcgt tccgctgatt gccatcggca
    12061 cgttcggcgg gcatatcctg cctaaggcag gcgattggat gaatgccgtc aaatacgctt
    12121 tcggctttat cctgcttgcc gtcgccgttt acctcgccac gccgcacttg ccctattatc
    12181 tcgtcgtcgc gctgtacacg ctgctgatgc tggttcctgc ctgtatgctg ctggtcaacg
    12241 gacgcaggca gaaacgccgt ccgaaagctg tggcattcgc attgggcagc atattgctga
    12301 taggcggcgc gtggttcggc tggcagggcg caaacggcaa aacgaccgcg ctgcaccatt
    12361 tcctgaccct caatccgccg gccgaagcag gcaaatcttc ggaacacggc aaaatgtttg
    12421 ccgatactgc cgcgctgaag gcagcgatgg atacggcgtt gaaagaacat cccgacaaac
    12481 ccgtcgtttt ggatttttat gccgactggt gcatttcctg caaagaaatg gcggcttaca
    12541 cgctcaatca gccggaagtg catcaggcag tcgatatgga acgctttttc caaatcgacg
    12601 taaccgccaa cacgcccgaa catcaggcgt tgttgaaaga atacggtctg ttcgggccgc
    12661 cgggcgtgtt tgtcgtccgc tccgacggca gccgcagcga gccgctgctg ggttttgtca
    12721 aagcagacaa gtttatcgag tggtatgaac aaaaccgctg attccgatgt ttcaaatgcc
    12781 gtctgaagtt ctcagacggc atttttgtca gaaaggaaaa cggcaatatc cgctatacac
    12841 acggaagcag tccaaagatg tgaaaaccgt gtgtataagt tagtttgcgt attgaaatta
    12901 aaagataaaa atacgatgat taaaaaatag gcataagaaa agataaacac agccggtgtt
    12961 tgccggtgtg tgtatctttt gtggaaaaac atcttaatgt catgtatttt atggaaaata
    13021 ataacatgat taaaaaatag tcaatcatta aggttcaggt gggcggctgc aaccgtcaat
    13081 gtctgaaaag aggcagtgct gtttaagtat ggaaagtcgg atatagtgga ttaacaaaaa
    13141 tcaggacaag gcgacgaagc cgcagacagt acaaatagta cggaaccgat t
//
LOCUS       DAXHNP010000043        12947 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.043, whole genome shotgun sequence.
ACCESSION   DAXHNP010000043 DAXHNP010000000
VERSION     DAXHNP010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12947
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.043"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            109..933
                     /locus_tag="ACFM5C_000891"
     CDS             109..933
                     /locus_tag="ACFM5C_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="factor H-binding protein"
                     /protein_id="HFC6068628.1"
                     /translation="MNRTAFCCLSLTAALILTACSSGGGGVAADIGAGLADALTAPLD
                     HKDKSLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIE
                     VDGQLITLESGEFQVYKQSHSALTALQTEQVQDSEHSGKMVAKRQFRIGDIAGEHTSF
                     DKLPEGGRATYRGTAFGSDDASGKLTYTIDFAAKQGHGKIEHLKSPELNVDLAASDIK
                     PDKKRHAVISGSVLYNQAEKGSYSLGIFGGQAQEVAGSAEVETANGIRHIGLAAKQ"
     gene            1073..1750
                     /gene="tsaB"
                     /locus_tag="ACFM5C_000892"
     CDS             1073..1750
                     /gene="tsaB"
                     /locus_tag="ACFM5C_000892"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HFC6068629.1"
                     /translation="MQADFNRPVLAVDTGTSYLSLALRADGETRLFHQEAGSRQSELI
                     LPEIRTLFRNAGITAADLGAIVYAKGPGAFTGLRIGIGVAQGLATPFNTPLIGIPSLD
                     AAASLPPPQSCILAAADARMGEVFYAWFDTLNRRRLSDYQVGRAADIRLPEGCAFSDG
                     IGSAFALEETPPFSGKPDMPTAADFLALALGGGYPATGAAHAELLYVRNKIALTAKEQ
                     AERRARP"
     gene            1747..2187
                     /gene="rimI"
                     /locus_tag="ACFM5C_000893"
     CDS             1747..2187
                     /gene="rimI"
                     /locus_tag="ACFM5C_000893"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HFC6068630.1"
                     /translation="MNIRRASPSDCAALAALDAVCNPSAWTQRQFESALVSPSEQVFL
                     AEKDGGIAAFIVWQNLPDESELHLIATAPECRRRGVASALLEYWFAHLPEGTQRLLLE
                     VRAGNIGAHALYAAHGFSIAGRRKNYYRATDGQTEDAVLMEKIC"
     gene            2181..2915
                     /locus_tag="ACFM5C_000894"
     CDS             2181..2915
                     /locus_tag="ACFM5C_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6068631.1"
                     /translation="MLSARYLHLHEALGLGSMWLKQAAAVLPPKNTPATPVQARPQTV
                     RAAPIRPSQPHNGQARLETMKALETAAVPTRKPAPETETPLPGLSDGIAPVPAASGIT
                     RLAVVSLCPPIEDAVYGQLFHGKAGVLLDNILKAVGLDAAYVHKTCWVKTAAVGNPMP
                     SEQAVANALGQIARELDGCRAPAVLFLGQAFVQPERQTMIETLCGSRPFFIIDHPARL
                     LRQPELKARNWQVLKQLKHALQAGGS"
     gene            2977..3618
                     /gene="pyrE"
                     /locus_tag="ACFM5C_000895"
     CDS             2977..3618
                     /gene="pyrE"
                     /locus_tag="ACFM5C_000895"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFC6068632.1"
                     /translation="MTDFRQDFLKFSLAQNVLKFGEFTTKAGRQSPYFFNAGLFNDGL
                     STLQLAKFYAQSIIESGIQFDMLFGPAYKGIILAAATAMMLAEKGVNVPFAYNRKEAK
                     DHGEGGVLVGAPLKGRVLIIDDVISAGTSVRESIKLIEAEGATPAGVAIALDRMEKGT
                     GELSAVQEVEKQYGLPVAPIASLNDLFILLQNNPEFGQFLEPVRAYRRQYGVE"
     gene            3692..4126
                     /locus_tag="ACFM5C_000896"
     CDS             3692..4126
                     /locus_tag="ACFM5C_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HFC6068633.1"
                     /translation="MPACFCPHCKTRLWVKETQLNVAQGFVVCQKCEGLFKAKDHLAS
                     TKEPIFNDLPEAVSDVKLVHRIGTRAIGKKQISRDEIAGILNGGTTLHDTPPATAATP
                     AAAPQVAVPPAAPARQEGFNWTIATLFALIVLIMQLSYLVIL"
     gene            4123..5433
                     /gene="argA"
                     /locus_tag="ACFM5C_000897"
     CDS             4123..5433
                     /gene="argA"
                     /locus_tag="ACFM5C_000897"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HFC6068634.1"
                     /translation="MIVPDLFVAHFREAVPYIRQMCGKTLVAGIDDRLLEGDTLNKLA
                     ADIGLLSQLGIRLVLIHGARHFLDRHAAAQGRTPHYCRGLRVTDETSLEQAQQFAGTV
                     RSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
                     QLDAGNIVWLPPLGHSYSGKTFYLDMLQTAASAAVSLQAEKLVYLTLSDGISRPDGTL
                     AETLSAQEAQSLAEHAGGETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNG
                     IGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHD
                     GNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARSMGISRLFALS
                     TNTGEWFAERGFQTASEDELPETRRKAYRSNGRNSHILVRRLHR"
     gene            5529..7544
                     /locus_tag="ACFM5C_000898"
     CDS             5529..7544
                     /locus_tag="ACFM5C_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family protein"
                     /protein_id="HFC6068635.1"
                     /translation="MKSYPDPYRHFEDLDSAETQNFAAEANAETRARFLNNDKARALS
                     DGILAQLQDTRQIPFCQEHRARMYHFHQDTEYPKGVYRVCTAATYRSGYPEWKILFSV
                     ADFDELLGDDVYLGGVSHLVEQPNRALLTLSKSGGDTAYTLEVDLEAGELVEGGFHFP
                     AGKNHVSWRDENSVWVCPAWDERQLTESGYPREVWLVERGKSFEESLPVYQIDKDAMM
                     VNAWRYLDPQGSPIDLIEASDGFYTKTYLQVSSESEAKPLNLPNDCDVAGYLAGHLLL
                     TLRKDWNRANQSYPSGALVAVKLNRGELGAAQLLFAPDETQALESVETTKRFVVASLL
                     ENVQGRLKAWRFADGKWQEAELPRLPSGALEMTDQPWGGDVVYLAASDFTTPLTLFAL
                     DLNVMELTVMRRQPQQFDSDGINVQQFWTTSADGERIPYFHVGKNAAPDMPTLVYAYG
                     GFGIPELPHYLGSIGKYWLEEGNAFVLANIRGGGEFGPRWHQAAQGISKHKSVDDLLA
                     VVRDLSERGMSSPRHIGLQGGSNGGLITAAAFVCEPQSIGALVCEVPLTDMIRYPLLS
                     AGSSWTDEYGNPQKYEVCKRWLGELSPYHNLSDGIDYPPALITTSLSDDRVHPAHALK
                     FYAKLHETSAQSWLYSPDGGGHTGNGTQRESADELACVLLFLKEFLG"
     gene            complement(7658..8614)
                     /locus_tag="ACFM5C_000899"
     CDS             complement(7658..8614)
                     /locus_tag="ACFM5C_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6068636.1"
                     /translation="MNTAAIYRQYQTYVRSDKSGWALDGCSDSALIAQAKQPGLHLEM
                     CINRFDSGITLSRMRGGGTGAFPTEIHNFSHNCALFVMVSGQNRLQMGGREYRPSAGE
                     IWLVRGELADVSETLLPDNSGMCALHLDFSLEKLRRWHDEGLLDERLFSPQTIGRFAL
                     QRLAQNAAALTAAACPLLQRPFESDGFGLLADEAAALELSARLLRFTFRRHDNGYRRR
                     RIDEAADILQHEFARPLTIAEIARRVGLNECYLKRYFKAQTGETVAGCLRRLRLEHAL
                     ALIESGSTVQAAMHFCGYRHAGRFNEAFRRHYGFLPSDVKKC"
     gene            8850..9815
                     /locus_tag="ACFM5C_000900"
     CDS             8850..9815
                     /locus_tag="ACFM5C_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6068637.1"
                     /translation="MKPRFYWAACAVLLTACSPEPAAEKTVSAASASAATLTVPTARG
                     DAVVPKNPERVAVYDWAALDTLTELGVNVGATTAPVRVDYLQPAFDKAATVGTLFEPD
                     YEALHRYNPQLVITGGPGAEAYEQLAKNATTIDLTVDNGNIRTSGEKQMETLARIFGK
                     EARAAELKAQIDALFAQTREAAKGKGRGLVLSVTGNKVSAFGTQSRLASWIHGDIGLP
                     PVDESLRNEGHGQPVSFEYIKEKNPDWIFIIDRTAAIGQEGPAAVEVLDNALVRGTNA
                     WKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAGKE"
     gene            complement(10122..10274)
                     /locus_tag="ACFM5C_000901"
     CDS             complement(10122..10274)
                     /locus_tag="ACFM5C_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068638.1"
                     /translation="MRFVVLASFSGRSCNESVIDFDVSLRLTALSLTLSHRERGRVAV
                     ASLFAA"
     gene            10305..10628
                     /locus_tag="ACFM5C_000902"
     CDS             10305..10628
                     /locus_tag="ACFM5C_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003775941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFC6068639.1"
                     /translation="MQNETINLKQHLAAIKEYWQPEIINRHGFQFRLVKLLGDYGWHT
                     HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSVVLIELSD
                     PSEAV"
     gene            10742..12919
                     /gene="tdfF"
                     /locus_tag="ACFM5C_000903"
     CDS             10742..12919
                     /gene="tdfF"
                     /locus_tag="ACFM5C_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010950972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent iron piracy receptor TdfF"
                     /protein_id="HFC6068640.1"
                     /translation="MTRFKYSLLFAALLPVYAQADVSVSDDPKPQESTELPTITVTAD
                     RTASSNDGYTVSGTHTPLGLPMTLREIPQSVSVITSQQMRDQNIKALDRALLQATGTS
                     RQIYGSDRAGYNYLFARGSRIANYQINGIPVADALADTGNANTAAYERVEVVRGVAGL
                     LDGTGEPSATVNLVRKRPTRKPLFEVRAEAGNRKHFGLGADVSGSLNAEGTLRGRLVS
                     TFGRGDSWRQRERSRDAELYGILEYDIAPQTRVHAGMDYQQAKETADAPLSYAVYDSQ
                     GYATAFGPKDNPATNWANSRHRALNLFAGIEHRFNQDWKLKAEYDYTRSRFRQPYGVA
                     GVLSIDHNTAATDLIPGYWHADPRTHSASVSLIGKYRLFGREHDLIAGINGYKYASNK
                     YGERSIIPNAIPNAYEFSRTGAYPQPSSFAQTIPQYGTRRQIGGYLATRFRAADNLSL
                     ILGGRYSRYRTGSYDSRTQGMTYVSANRFTPYTGIVFDLTGNLSLYGSYSSLFVPQSQ
                     KDEHGSYLKPVTGNNLEAGIKGEWLEGRLNASAAVYRARKNNLATAAGRDPSGNTYYR
                     AANQAKTHGWEIEVGGRITPEWQIQAGYSQSKTRDQDGSRLNPDSVPERSFKLFTAYH
                     FAPEAPSGWTIGAGVRWQSETHTDPATLRIPNPAAKARAADNSRQKAYAVADIMARYR
                     FNPRAELSLNVDNLFNKHYRTQPDRHSYGALRTVNAAFTYRFK"
BASE COUNT         2897 a         4041 c         3581 g         2428 t
ORIGIN      
        1 aggcaattga aaattttttg gcgcattttt atgcgtcaaa tttcgttaac agactatttt
       61 tgcaaaggtc tcatattatc tattctgcgt atgactagga gcaaacctgt gaaccgaact
      121 gccttctgct gcctttcttt gaccgccgcc ctgattctga ccgcctgcag cagcggaggc
      181 ggcggtgtcg ccgccgacat cggcgcgggg cttgccgatg cactaaccgc accgctcgac
      241 cataaagaca aaagtttgca gtctttgacg ctggatcagt ccgtcaggaa aaacgagaaa
      301 ctgaagctgg cggcacaagg tgcggaaaaa acttatggaa acggcgacag cctcaatacg
      361 ggcaaattga agaacgacaa ggtcagccgc ttcgacttta tccgtcaaat cgaagtggac
      421 gggcagctca ttaccttgga gagcggagag ttccaagtgt acaaacaaag ccattccgcc
      481 ttaaccgccc ttcagaccga gcaagtacaa gattcggagc attcagggaa gatggttgcg
      541 aaacgccagt tcagaatcgg cgatatagcg ggtgaacata catcttttga caaacttccc
      601 gaaggcggca gggcgacata tcgcgggacg gcattcggtt cagacgatgc cagtggaaaa
      661 ctgacctaca ccatagattt cgccgccaag cagggacacg gcaaaatcga acatttgaaa
      721 tcgccagaac tcaatgttga cctggccgcc tccgatatca agccggataa aaaacgccat
      781 gccgtcatca gcggttccgt cctttacaac caagccgaga aaggcagtta ctctctaggc
      841 atctttggcg ggcaagccca ggaagttgcc ggcagcgcag aagtggaaac cgcaaacggc
      901 atacgccata tcggtcttgc cgccaagcag taaccattgt gaaaatgccg tccgaacacg
      961 ataatttacc gttcggacgg catttttgcg ccataccgcc ctaggatacg acggcacggc
     1021 aggcaagccg gtttcactat ataatgccgt ctgaaccaac gagaaccaca ccatgcaagc
     1081 cgatttcaac cgccccgtcc tcgccgtcga taccggaact tcctatttgt cgctcgcgct
     1141 gcgcgccgac ggcgaaaccc gcctgttcca tcaagaggcc ggcagccgcc aatccgaact
     1201 gattctgccg gaaatccgca ctctattccg aaatgcgggc attaccgccg ccgatttggg
     1261 ggcgattgtt tatgcgaaag gtcccggcgc gtttacgggg ctgcgtatcg gcatcggcgt
     1321 ggcgcagggt ttggcaacgc cgttcaatac gcctttaatc ggcattccct cgctcgatgc
     1381 tgccgcctcg ctgccgccgc cgcaaagctg catccttgcc gctgcggacg cgcgtatggg
     1441 cgaagtgttt tatgcgtggt tcgacacgct gaaccgccgc cgtttgagcg attatcaggt
     1501 cggtagggcg gcagacatcc ggctgccgga gggatgtgcc ttttcagacg gcatcggcag
     1561 cgcgttcgcg ctggaagaga ccccgccgtt ttcaggtaaa cctgatatgc cgactgctgc
     1621 cgattttctc gcgctcgccc tcggcggcgg ctatcccgca actggcgcgg cacacgccga
     1681 gctgctctac gtccgcaaca aaatcgccct gactgccaaa gaacaggcgg aacggagggc
     1741 gcgtccgtga acatccgccg cgcctcaccg tccgactgcg ccgcactggc cgcgctcgat
     1801 gccgtctgca acccgtccgc gtggacgcaa cgccaatttg agtccgcgct tgtttcgccg
     1861 tccgaacagg ttttccttgc ggaaaaagac ggcgggattg ccgcctttat cgtttggcag
     1921 aacctgcccg acgaatccga gctgcacctg attgccaccg cgcccgaatg ccgccgccgt
     1981 ggcgttgcgt ccgccctgct cgaatattgg ttcgcacatc tgcccgaagg cacgcaacgc
     2041 ctgctgctcg aagtccgcgc gggcaatatc ggcgcgcacg cgctgtacgc ggcgcacggc
     2101 ttcagcattg cgggcaggcg gaaaaactat taccgcgcca ccgacgggca aaccgaagat
     2161 gccgtcttga tggagaaaat atgttaagcg cgcgctacct ccacctgcac gaagctttgg
     2221 gtttgggctc gatgtggctg aaacaggccg ccgccgtcct gccgcccaaa aacacacccg
     2281 caaccccggt acaggcacgt ccccaaaccg tccgcgccgc tccgattcgc ccttcccaac
     2341 cccataacgg tcaggcgcgg ctcgaaacga tgaaagcgtt ggaaaccgcc gccgtaccta
     2401 cgcgcaaacc cgcgcctgaa accgaaacgc ctctgcccgg cctttcagac ggcatcgccc
     2461 ccgttcctgc cgcttcgggc attaccagac tcgccgtcgt cagcctgtgt ccgccaatcg
     2521 aggatgcggt ttacgggcaa ctgttccacg gcaaagcggg tgttctgctt gacaacatac
     2581 tcaaagccgt aggactggat gccgcctatg tccacaaaac ctgttgggtg aaaaccgccg
     2641 ccgtcggcaa cccgatgccg tctgaacagg ccgtcgcgaa tgcgctgggt caaatcgcca
     2701 gggaactcga cggctgccgc gccccggccg tccttttcct cgggcaggct tttgtccagc
     2761 ctgaacggca aacgatgatt gaaactttgt gcggcagccg tcccttcttc atcatcgacc
     2821 atcccgcccg gcttttacgc caacccgaac ttaaagcccg aaactggcag gtgttgaaac
     2881 agttgaaaca cgccttgcag gcaggcggca gttgaagcag gccgcacggg gcggtagaat
     2941 cacaactgca tcgcaatacc tgacagaaag caaaaaatga ccgatttccg ccaagatttc
     3001 cttaaattct ccctcgccca aaacgtctta aaattcggcg aatttaccac caaggcagga
     3061 cggcagtcgc cttacttctt caatgccggc ctctttaacg acggcttatc cacgctgcaa
     3121 ctggcaaaat tctatgcaca atccatcatt gaaagcggca tccaattcga tatgctgttc
     3181 ggccccgcct acaaaggcat tattttggcg gcggcaaccg cgatgatgct ggcggaaaaa
     3241 ggcgtaaacg tcccgtttgc ctacaaccgc aaagaagcca aagaccacgg cgaaggcggc
     3301 gtgttggtcg gtgcgccgct taaagggcgc gtgctgatta tcgacgatgt gatttccgcc
     3361 ggcacatccg tacgcgaatc gatcaaactg attgaagcgg agggtgcaac ccccgccggt
     3421 gtcgccatcg cgctcgaccg catggaaaaa ggcaccggcg aattgagcgc ggttcaggaa
     3481 gtggaaaaac aatacggtct gcccgtcgcc cccatcgcca gcctgaacga tttgtttatt
     3541 ctgttgcaaa acaaccccga attcggacag ttcctcgaac ccgtccgagc ctaccgtcgg
     3601 cagtacggcg tagaataaaa acaaagcata tgccgtccga accgccttac gcctcagacg
     3661 gcatcaaacc tgacacacac gaggaaatac catgcccgcc tgtttctgcc cccactgcaa
     3721 aacccgtctc tgggtcaaag aaacccaact caatgtcgcc caaggcttcg tcgtctgcca
     3781 aaaatgcgaa ggactgttta aagccaaaga ccatctggca agcacgaaag aacccatatt
     3841 caacgatttg cccgaggctg tttcggatgt caaactcgtt caccgcatcg gcacgcgcgc
     3901 cattggcaag aaacagattt cccgcgacga aatcgccggc atcctcaacg gcggtacaac
     3961 cctgcacgat acgccgcccg caaccgccgc cacccctgcc gccgcaccgc aggttgccgt
     4021 accgcccgcc gcgcctgccc gtcaggaagg gttcaactgg acgattgcaa ccctgtttgc
     4081 ccttatcgtc ctcattatgc agctttccta cctcgtcatc ctatgatcgt gcccgacctc
     4141 tttgtcgccc acttccgcga agccgtcccc tacatccgcc aaatgtgcgg caaaacgctg
     4201 gtcgccggca tagacgaccg cctgctcgaa ggtgatacct taaacaagct cgccgccgac
     4261 atcgggctgt tgtcgcaact gggcatcagg ctcgtcctca tccacggcgc gcgccacttc
     4321 ctcgaccgcc acgccgccgc gcaaggccgc acgccgcatt attgccgggg cttgcgcgtt
     4381 accgacgaaa cctcgctcga acaggcgcag cagtttgccg gcaccgtccg cagccgtttt
     4441 gaagccgcat tgtgcggcag cgtttccggg ttcgcgcgcg cgccttccgt cccgctcgta
     4501 tcgggcaact tcctgaccgc ccgtccgata ggtgtgattg acggaaccga tatggaatac
     4561 gcgggcgtta tccgcaaaac cgacaccgcc gccctccgtt tccaactcga cgcgggcaat
     4621 atcgtctggc tgccgccgct cggacattcc tacagcggca agaccttcta tctcgatatg
     4681 cttcaaaccg ccgcctccgc cgccgtctcg cttcaggccg aaaaactcgt ttacctgacc
     4741 ctttcagacg gcatttcccg ccccgacggc acgctcgccg aaaccctctc ggcacaggaa
     4801 gcgcaatcgc tggcggaaca cgccggcggc gaaacgcgac ggctgatttc gtccgccgtt
     4861 gccgcgctcg aaggcggcgt gcatcgcgtc caaatcctca acggagccgc cgacggcagc
     4921 ctgctgcaag aactcttcac ccgcaacggc atcggcacgt ccattgccaa agaagccttc
     4981 gtctccatcc ggcaggcgca cagcggcgac atcccgcaca ttgccgccct catccgcccg
     5041 ctggaagaac agggcatcct gctgcaccgc agccgcgaat acctcgaaaa ccacatttcc
     5101 gaattttcca tcctcgaaca cgacggcaac ctgtacggtt gcgccgccct gaaaaccttt
     5161 gccgaagccg attgcggcga aatcgcctgc cttgccgtct cgccgcaggc acaggacggc
     5221 ggctacggcg aacgcctgct tgcccacatt atcgataagg cgcgcagtat gggcataagc
     5281 aggctgttcg ccctctccac aaataccggc gaatggtttg ccgaacgcgg ctttcagacg
     5341 gcatcggaag acgagttgcc cgaaacgcgg cgcaaagcct accgcagcaa cggacggaac
     5401 tcgcatattc tggtacgtcg cctgcaccgc tgaccgcaac ggaaagccgc cgcagaaatg
     5461 ccgtctgaac cccgtttcag acggcatttc cccgattata aagacctgcc caaccctcaa
     5521 ggaccccgat gaaatcctac cccgacccct accgccattt tgaagacctc gattccgccg
     5581 aaacgcaaaa cttcgctgct gaagcgaatg ccgaaacgcg cgcgcgtttt ttaaacaacg
     5641 acaaggcacg cgcattgtct gacggcattt tggcgcagtt gcaggacacg cggcaaattc
     5701 cgttttgtca ggaacaccgc gcgcggatgt accatttcca tcaggacacg gaatatccga
     5761 agggcgtgta ccgcgtgtgt acggcggcga cttaccgttc cggctatcct gagtggaaaa
     5821 tcctgttttc ggtggcggat ttcgacgaat tgctcggcga cgatgtgtat ttgggcggcg
     5881 tgtcgcactt ggtggaacag cccaaccgcg cgttgttaac actgagcaaa tcgggcggcg
     5941 atacggcgta cacgctggaa gtggatttgg aagcagggga attggtagaa ggcggttttc
     6001 actttccggc aggtaaaaac catgtgtcgt ggcgcgatga aaacagcgta tgggtgtgtc
     6061 cggcttggga cgaacgccag ttgaccgaat cgggctatcc gcgcgaggtg tggctggtgg
     6121 aacgcggcaa aagtttcgag gaaagcctgc ctgtgtatca aatcgataaa gatgcaatga
     6181 tggtgaacgc gtggcgttat ctcgatccgc agggttcgcc gattgatttg attgaagcgt
     6241 cggacggttt ttacaccaaa acctatttgc aggtgtcgtc ggaaagcgag gcgaaaccgt
     6301 taaacctgcc caacgattgc gacgtggccg gctatctggc cggacatctt ttgctgacgt
     6361 tacgtaaaga ctggaaccgc gcgaaccaaa gctatccgag cggcgcattg gtggcggtga
     6421 agctgaatcg gggcgaactc ggggcggcac agcttttgtt tgcgcccgat gaaacgcagg
     6481 cattggaaag cgtggaaacg accaagcgtt ttgtggtggc gagcctgctg gaaaacgtac
     6541 aaggccgtct gaaagcgtgg cggtttgccg atggcaaatg gcaggaagct gagttgccgc
     6601 gcctgccttc gggcgcgttg gaaatgaccg atcagccttg gggcggcgac gtggtttacc
     6661 ttgccgccag cgatttcacc acgccgctga cgctgtttgc gctggatttg aacgtgatgg
     6721 aactgaccgt catgcgccgc cagccgcagc agtttgattc agacggcatt aacgtgcagc
     6781 agttttggac gacttcggct gacggcgagc gcattcctta tttccacgtc ggcaaaaacg
     6841 ccgcgcccga catgccgacg ctggtctatg cctacggcgg tttcggcatt cccgaattgc
     6901 cgcattatct gggcagcatt ggcaaatatt ggctggaaga gggcaatgcc tttgtattgg
     6961 cgaacatccg cggcggcggc gagttcggcc cgcgctggca tcaggcggcg cagggcatca
     7021 gcaaacataa aagcgttgat gatttattgg cagtcgtgcg cgatttgtcc gaacgcggca
     7081 tgagttcgcc cagacacatc ggtttgcagg gcggcagcaa cggcggcctg attaccgccg
     7141 ctgccttcgt gtgcgaaccg caaagcatcg gcgcgctggt gtgcgaagta ccgctgaccg
     7201 acatgatccg ttatccgcta ttgtccgccg gttcaagttg gacggacgaa tacggcaatc
     7261 cgcaaaaata cgaagtctgc aaacgctggc tgggcgaatt gtcgccgtat cacaatcttt
     7321 cagacggcat cgattatccg cctgcgctca ttaccaccag cctcagcgac gaccgcgtcc
     7381 atcctgccca cgcgctcaag ttttacgcca aactgcatga aacctcggcg caatcttggc
     7441 tctactcgcc tgacggcggc ggccataccg gcaacggcac ccaacgcgaa tccgccgacg
     7501 aactcgcctg cgtcttgctg tttttgaaag agtttttggg ctaagggcgg ggagcggcac
     7561 tgccgccgcg aatgaaaaaa ggtcgtctga aactgctttt tcagacgacc ttttttaatg
     7621 gttgtttcaa atcaaaatat ctatgccgcc ggccccatca gcacttcttc acatccgaag
     7681 gcaaaaatcc gtaatgccgt ctgaacgctt cgttgaaccg tcccgcgtgg cggtagccgc
     7741 aaaagtgcat ggcggcttgg acggtgctgc cggattcgat gagggcgagc gcgtgttcca
     7801 gccgcaggcg gcgcaggcat ccggcgacgg tttcaccggt ttgcgctttg aaatagcgtt
     7861 tcaggtagca ttcgttcagt ccgacgcggc gggcgatttc ggcgatggtc agcggacggg
     7921 cgaattcgtg ttgcaggatg tcggcggctt cgtctatgcg ccggcggcgg taaccgttgt
     7981 cgtggcggcg gaaggtgaag cgcaataatc gggcggagag ttccagcgcg gcggcttcgt
     8041 cggcaagcag gccgaagccg tccgattcga acgggcgttg cagcagtggg caggccgccg
     8101 ccgtcagtgc cgctgcgttt tgcgccagcc gttgcagggc gaatcggcct attgtttgcg
     8161 gcgaaaacag gcgttcgtcc agcaagcctt cgtcgtgcca gcggcgcagt ttttccagcg
     8221 aaaaatccaa atgcagcgcg cacatgccgc tgttgtcggg cagcagggtt tcggatacgt
     8281 ccgccaactc gccgcgtacc agccagattt cgccggcaga cgggcggtat tccctgccgc
     8341 ccatttgtaa ccggttctgc cccgacacca tgacgaacaa ggcgcagttg tggctgaaat
     8401 tgtggatttc ggtgggaaac gcgcccgttc cgccgccgcg catccgcgac aaggtgatgc
     8461 ccgagtcgaa gcggttgatg cacatttcca gatgcaaacc gggctgtttt gcctgcgcaa
     8521 tgagcgcgct gtcggaacag ccgtccaacg cccagccgga tttatcggag cggacatagg
     8581 tttggtactg gcggtagatg gcggcggtgt tcatgattgg ataggaacga gttgtctaac
     8641 aaatgaatta aataggaatt attaccaata atcaagcgca gggattggtt gaaacggaaa
     8701 aggtcgtctg aaagggtgtt tcagacgacc ttttccgtat cgggaatttg ttttgccgta
     8761 tcgggaattt tgcgttttgc ggcgtggttt ctgcaggttg tttgcttaat aataaacatt
     8821 cttattcgta tgcaaaggaa ccgcacaccg tgaaaccgcg tttttattgg gcagcctgcg
     8881 ccgtcctgct gaccgcctgt tcgcccgaac ctgccgccga aaaaactgta tccgccgcat
     8941 ccgcatctgc cgccacactg accgtgccga ccgcgcgggg cgatgccgtt gtgccgaaga
     9001 atcccgaacg cgtcgccgtg tacgactggg cggcgttgga tacgctgacc gaattgggcg
     9061 tgaatgtggg cgcaaccacc gcgccggtgc gcgtggatta tttgcagcct gcatttgaca
     9121 aggcggcaac ggtggggacg ctgttcgagc ccgattacga agccctgcac cgctacaatc
     9181 ctcagcttgt cattaccggc gggccgggcg cggaagcgta tgaacagttg gcgaaaaacg
     9241 cgaccaccat agatctgacg gtggacaacg gcaatatccg caccagcggc gaaaagcaga
     9301 tggagacctt ggcgcggatt ttcggcaagg aagcgcgcgc ggcggaattg aaggcgcaga
     9361 ttgacgcgct gttcgcccaa acgcgcgaag ccgccaaagg caaaggacgc gggctggtgc
     9421 tgtcggttac gggcaacaag gtgtccgcct tcggcacgca gtcgcggttg gcaagttgga
     9481 tacacggcga catcggccta ccgcctgtag acgaatcttt acgcaacgag gggcacgggc
     9541 agcctgtttc cttcgaatac atcaaagaga aaaaccccga ttggattttc atcatcgacc
     9601 gtaccgccgc catcgggcag gaagggccgg cggctgtcga agtattggat aacgcgctgg
     9661 tacgcggcac gaacgcttgg aagcgcaagc aaatcatcgt catgcctgcc gcgaactaca
     9721 ttgtcgcggg cggctcgcgg cagttgattc aggcggcgga gcagttgaag gcggcgtttg
     9781 aaaaggcaga acccgttgcg gcggggaaag agtagggagt cgtctgaaaa cggagcttcc
     9841 gaaggaagcg gggggtttct gcgaagctaa agtgcggttt caacgaattg aaaagcagcc
     9901 tgtattttga aaataccgct caagcaaacc tacggtttgc cgccctctcc ctagccctct
     9961 cccacaggga gaggggattg ggttgcaggc tgcctttaag gtttaggcaa atttttaact
    10021 tcgttgaagc tccgttttca gacgaccttt tggaacacca caggcacacg catcgaacgg
    10081 ctgaatcaaa gattcagacc gatggcagtc cgcacccgag tttatgcggc aaacagcgag
    10141 gctacggcaa cccgccccct ctccctgtgg gagagggtta gggagagggc ggtaagccgc
    10201 aggcttacat caaagtcgat aacgctttcg ttacaactcc gcccactgaa cgaagccaaa
    10261 acgacaaacc gcatcgtaaa ccacccaacc cataggagaa ccccatgcaa aacgaaacca
    10321 tcaacctgaa acagcacctt gccgccatca aagaatactg gcagcccgaa atcatcaacc
    10381 gccacgggtt ccaattccgt ttggtcaaac ttttgggcga ttacggctgg catacgcacg
    10441 gatacagcga caaagtgctg tttgccgtgg agggcgacat ggcggtggac ttcgccgacg
    10501 gcggcagcat gacgatacgc gagggcgaga tggcggtcgt gccgaagtcg gtgtcgcacc
    10561 gcccgcgttc ggaaaacggc tgctcggtgg tgctgattga gttgtccgac ccgtccgagg
    10621 ccgtctgaaa acgaagtttc cgaaggaagc tgagtttctg cgaagctaaa agcagcctgc
    10681 accttcaatc aatatgccga aaatacaacc ccaccgcaca ccaacacaca aaggaaatcc
    10741 catgacacgc ttcaaatatt ccctgctgtt tgccgccctg ttgcccgtgt acgcgcaggc
    10801 cgatgtttct gtttcagacg accccaaacc gcaggaaagc actgaattgc cgaccatcac
    10861 cgttaccgcc gaccgcaccg cgagttccaa cgacggctac actgtttccg gcacgcacac
    10921 cccgctcggg ctgcccatga ccctgcgcga aatcccgcag agcgtcagcg tcatcacatc
    10981 gcaacaaatg cgcgaccaaa acatcaaagc gctcgaccgc gccctgttgc aggcgaccgg
    11041 caccagccgc cagatttacg gctccgaccg cgcgggctac aactacctgt tcgcgcgcgg
    11101 cagccgcatc gccaactacc aaatcaacgg catccccgtt gccgacgcgc tggccgatac
    11161 gggcaatgcc aacaccgccg cctatgagcg cgtagaagtc gtgcgcggcg tggcggggct
    11221 gctggacggc acgggcgagc cttccgccac cgtcaatctg gtgcgcaaac gcccgacccg
    11281 caagccattg tttgaagtcc gcgccgaagc gggcaaccgc aaacatttcg ggctgggcgc
    11341 ggacgtatcg ggcagcctga atgccgaagg cacgctgcgc ggccgcctgg tttccacctt
    11401 cggacgcggc gactcgtggc ggcagcgcga acgcagccgc gatgccgaac tctacggcat
    11461 tttggaatac gacatcgcac cgcaaacccg cgtccacgca ggcatggact accagcaggc
    11521 gaaagaaacc gccgacgcgc cgctcagcta cgccgtgtac gacagccaag gttatgccac
    11581 cgccttcggc ccgaaagaca accccgccac aaattgggcg aacagccgcc accgtgcgct
    11641 caacctgttc gccggcatcg aacaccgctt caaccaagac tggaaactca aagccgaata
    11701 cgactacacc cgcagccgct tccgccagcc ctacggcgta gcaggcgtgc tttccatcga
    11761 ccacaacacc gccgccaccg acctgattcc cggttattgg cacgccgacc cgcgcaccca
    11821 cagcgccagc gtgtcattga tcggcaaata ccgcctgttc ggccgcgaac acgatttaat
    11881 cgcgggtatc aacggttaca aatacgccag caacaaatac ggcgaacgca gcatcatccc
    11941 caacgccatt cccaacgcct acgaattttc ccgcacgggc gcctatccgc agccatcatc
    12001 gtttgcccaa accatcccgc aatacggcac caggcggcaa atcggcggct atctcgccac
    12061 ccgtttccgc gccgccgaca acctttcgtt gatactcggc ggcagataca gccgttaccg
    12121 caccggcagc tacgacagcc gcacacaagg catgacctat gtgtccgcca accgtttcac
    12181 cccctacaca ggcatcgtgt tcgacctgac cggcaacctg tcgctttacg gctcgtacag
    12241 cagcctgttc gtcccgcaat cgcaaaaaga cgaacacggc agctacctga aacccgtaac
    12301 cggcaacaat ctggaagccg gcatcaaagg cgaatggctt gaaggccgtc tgaacgcatc
    12361 cgccgccgtg taccgcgccc gtaaaaacaa cctcgccacc gcagcaggac gcgacccgag
    12421 cggcaacacc tactaccgcg ccgccaacca agccaaaacc cacggctggg aaatcgaagt
    12481 cggcggccgc atcacgcccg aatggcagat acaggcaggt tacagccaaa gcaaaacccg
    12541 cgaccaagac ggcagccgcc tgaaccccga cagcgtaccc gaacgcagct tcaaactctt
    12601 cactgcctac cactttgccc ccgaagcccc cagcggctgg accatcggcg caggcgtgcg
    12661 ctggcagagc gaaacccaca ccgaccctgc cacgctccgc atccccaacc ccgccgccaa
    12721 agcccgcgcc gccgacaaca gccgccaaaa agcctacgcc gtcgccgaca tcatggcgcg
    12781 ttaccgcttc aatccgcgcg ccgaactgtc gctgaacgtg gacaacctgt tcaacaaaca
    12841 ctaccgcacc cagcctgacc gccacagtta cggcgcactg cggacagtga acgcggcgtt
    12901 tacctatcgg tttaaataag gtcgtctgaa aacggagttt ctgcgaa
//
LOCUS       DAXHNP010000044        12841 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.044, whole genome shotgun sequence.
ACCESSION   DAXHNP010000044 DAXHNP010000000
VERSION     DAXHNP010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12841
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.044"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            389..1105
                     /locus_tag="ACFM5C_000904"
     CDS             389..1105
                     /locus_tag="ACFM5C_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HFC6068641.1"
                     /translation="MTMHETTDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGI
                     AAKALPEVAKAFGVSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDD
                     DYVFVPYLKESCFKGGVGTYEIPDYNGYRLPFGKSTLKRKGINPDNVFCCTLTGDSME
                     EKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDE
                     NAPLDSLTVIGRVFWWSVLD"
     gene            1208..1633
                     /locus_tag="ACFM5C_000905"
     CDS             1208..1633
                     /locus_tag="ACFM5C_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068642.1"
                     /translation="MNFLGVQGELKVHELHHRTATLCFEWLGEVSAPRRKENYKDLKP
                     NVLYDFDGSGKHFANPDARYLLPVGSSGLILKHIQIDDEDTLLRLWCARNIPMPHRLS
                     KIPMLRQYYLSKAWHEIYAINQHLRKTKLIVDVAYDPTD"
     gene            1877..2077
                     /locus_tag="ACFM5C_000906"
     CDS             1877..2077
                     /locus_tag="ACFM5C_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068643.1"
                     /translation="METITIPKENFDALLNLARTAVALNENFIPKINYGASTIPAAGF
                     AALNEFGIARSTVESLEILKIK"
     gene            2145..2504
                     /locus_tag="ACFM5C_000907"
     CDS             2145..2504
                     /locus_tag="ACFM5C_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068644.1"
                     /translation="METQEKKFVPASKQIPTVNSGWLDRELGEAMSEAVRACLAHGKQ
                     SEITVKLKIQPQNIQSGTVKISHDVATKLPKEKREGGIVFATPDGNIQADDPAQGKLK
                     LKQVSNTSSTLKMVRSN"
     gene            2529..3383
                     /locus_tag="ACFM5C_000908"
     CDS             2529..3383
                     /locus_tag="ACFM5C_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HFC6068645.1"
                     /translation="METQENMIKTALQAAQKPFFEFAPNNTPLVFTPDQDGGWRYKSH
                     PELMQNPYRKCGKFLMHDTASLIKFVQKHKQDGTQIYIDADFKSGRIDVTAVINGHTQ
                     QAPGWLDFYAVYTPQHTTSASNWLNNNAHRMNQMEFSHFLTNNARNIVSKNPGNENSV
                     YPTAAEVLDFALNLEYTEKTTFKQGYREQDGRINFTFQSEDSGQTEKNLKMFERFGIE
                     FTPHQGGASYFVEALLKFRIDKNSGALVLWYELQQIDAVIEQAAKDISEAVQKAFPEI
                     DIYFGVIA"
     gene            3453..3668
                     /locus_tag="ACFM5C_000909"
     CDS             3453..3668
                     /locus_tag="ACFM5C_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068646.1"
                     /translation="MTITEEYSIDIRVTSEQGKNDYGYPTERYGCDIINTDGELLVGI
                     EPEYKTPFAAVRKALICLTKDNLKNAA"
     gene            3703..3963
                     /locus_tag="ACFM5C_000910"
     CDS             3703..3963
                     /locus_tag="ACFM5C_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO1622 family putative holin"
                     /protein_id="HFC6068647.1"
                     /translation="MKYLIRTALLAVAAAGIYACQPQSEAAVQVKAENSLTAMRLAVA
                     DKQAEIDGLNAQIDAEIRQREAEELKDYRWIHGDAEVPELEK"
     gene            3960..4253
                     /locus_tag="ACFM5C_000911"
     CDS             3960..4253
                     /locus_tag="ACFM5C_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068648.1"
                     /translation="MNFQEENENIKNDIEINLLHSAEADSVEAMMDLAVYGLAAMVAK
                     HNKTRGEQLVLQAIAGHMRKLLAALPETESLVQTGKVYRRLEDLIFKTYLPEQ"
     gene            4256..4447
                     /locus_tag="ACFM5C_000912"
     CDS             4256..4447
                     /locus_tag="ACFM5C_000912"
                     /inference="COORDINATES: protein motif:HMM:NF037202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type ISP restriction/modification enzyme"
                     /protein_id="HFC6068649.1"
                     /translation="MNTNQDTIPFGGNLVICCSTGNGGDGRFSCLITDQIPDLNLVRS
                     GQAFPMFIYEYETREKRKA"
     gene            4447..4587
                     /locus_tag="ACFM5C_000913"
     CDS             4447..4587
                     /locus_tag="ACFM5C_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6068650.1"
                     /translation="MDTLLKIIIALSFSGAEALVVWLFITAADAVLRRFQKPSHYRRV
                     KK"
     gene            4584..4793
                     /locus_tag="ACFM5C_000914"
     CDS             4584..4793
                     /locus_tag="ACFM5C_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6068651.1"
                     /translation="MNINELGARIDRPTIRELIAYATCRNRPISNSTLLRMEKDGRIP
                     CRLKTPLTSPVWDTREVLEALGLQQ"
     gene            complement(4851..5768)
                     /locus_tag="ACFM5C_000915"
     CDS             complement(4851..5768)
                     /locus_tag="ACFM5C_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HFC6068652.1"
                     /translation="MNVSVLNFGNTPVSFRQDGFLNATAIASHFGKLPKDYLKSEQTQ
                     QYISALAENLSVRRKILTEANQIVIVKRGGSEQGTWLHPKLAIHFARWLNPKFAVWCD
                     EQIEILLNGKISDGIKTVTPKPTRALPDGLTGEQIEAVKKLHNALTKSAPKEAQARIA
                     ITLWSAVKSKFGCSYKEVPAEQFPEVLSVMGRVAVENGVLYGEVLDREPLPAPQPALP
                     ISGNALYDLAVAVRYGAWAIQMGRDVSLPLKQLGCKQAVTMWTVWAETRSRLKAAANA
                     LEALNAHADAEHAAKIRPMLPEIRNLSSV"
     gene            complement(6637..6993)
                     /locus_tag="ACFM5C_000916"
     CDS             complement(6637..6993)
                     /locus_tag="ACFM5C_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6068653.1"
                     /translation="MAERNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAI
                     LTVLNQREFVCAGVLGGALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQE
                     FEAVARKWKKKPLKTK"
     gene            complement(7541..7921)
                     /locus_tag="ACFM5C_000917"
     CDS             complement(7541..7921)
                     /locus_tag="ACFM5C_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6068654.1"
                     /translation="MPLKFQPRERSVIMCDFRGYEEPEMVKKRPVVVIARNRHNGKLV
                     TVVPLSSTEPVPLADYHHKMSGNPLPDKPHIQCWAKCDMTATVGLARLDRYKPKGRDR
                     CIPIISEEDFQAIKTAVAKAFKLY"
     gene            complement(8078..9274)
                     /locus_tag="ACFM5C_000918"
     CDS             complement(8078..9274)
                     /locus_tag="ACFM5C_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFC6068655.1"
                     /translation="MAKIITPLSANQVKNAKPRDKLYKLSDGGGLALWVYPTGGRSWK
                     LSFVQDGRQQTISLGRYPDFSLADAREWREEVRRKRAHGENVVNKKVRADFAFEKVTR
                     DWFVRWSKGRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDT
                     LRKTKNSLKMVFAFAVGSGMMEINPVAQIGSGVFERAKTGNMAALSPSELPRLIDFLE
                     QRNEFAVYAGRVRIHPVTRLCIYWLLLTMTRIQEAALMEWSELDGEVWRIPAERKKER
                     RGHDVPLSRAMQWVLDQARALNVNGRFVFESVNFQGHINKESPRVAMQRAGLDTTAHG
                     LRSLARTYLREVLKVDNDVAEKLLAHSLGTRTQTAYNRSELWEERKDALERWGNDVLR
                     LAKNGK"
     gene            complement(9465..9554)
                     /locus_tag="ACFM5C_000919"
     tRNA            complement(9465..9554)
                     /locus_tag="ACFM5C_000919"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9518..9520),aa:Ser,seq:cga)
     gene            complement(9658..9748)
                     /locus_tag="ACFM5C_000920"
     tRNA            complement(9658..9748)
                     /locus_tag="ACFM5C_000920"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9712..9714),aa:Ser,seq:tga)
     gene            complement(9831..10610)
                     /gene="yaaA"
                     /locus_tag="ACFM5C_000921"
     CDS             complement(9831..10610)
                     /gene="yaaA"
                     /locus_tag="ACFM5C_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HFC6068656.1"
                     /translation="MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQ
                     QIAELMHVSDKIALLNAQRNAEWHTPFTPENAKQAVFMFNGDVYEGMDANTLDIGQIR
                     YLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLA
                     QAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRY
                     AVEHHITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK"
     gene            complement(10774..11961)
                     /gene="dapC"
                     /locus_tag="ACFM5C_000922"
     CDS             complement(10774..11961)
                     /gene="dapC"
                     /locus_tag="ACFM5C_000922"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HFC6068657.1"
                     /translation="MNTLLNQLKPYPFARLREAMQGISAPEGLEAVPLHIGEPKHPTP
                     KVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA
                     LFSFVQTVLDPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSI
                     SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK
                     PLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSA
                     MSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPD
                     GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAETIVS
                     LYR"
     gene            complement(12038..12490)
                     /gene="dut"
                     /locus_tag="ACFM5C_000923"
     CDS             complement(12038..12490)
                     /gene="dut"
                     /locus_tag="ACFM5C_000923"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HFC6068658.1"
                     /translation="MNIEVEMKVLDERMADFIPTYATAGSAGLDLRACLDEEVVLQPG
                     ETFLVPTGLAIYLANPSYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNR
                     SSEPFAVKPFERIAQMVIVPIVQARFKRVEEFVGSSRGEGGFGSTGLH"
BASE COUNT         3512 a         3300 c         2941 g         3088 t
ORIGIN      
        1 atattaaaaa ttatcgtcat caatgcggct tccccagccc gcggcgagct ttccacgaca
       61 ggcttttttt atttgggttg gtcgtctggt ttctttgagt tcaaaaacag gtcgggatac
      121 ttaagtttta ttcgtgcagg tatcccgcgc ttcgtccaat tgaaaacgca ttgagggcta
      181 ttccctgtta ttcgaccaac ttccgcgtaa ctgccgattg attgcaacag gcgtttgtct
      241 tcattgactc ttttatccat aaataaacca aatgtttaaa tctaatgcta atattaaaca
      301 ctatgtttag ataaaaatca agtcttgtgt aacaacattt tgtttaaata tgggagaata
      361 attaagccaa ccgcgaataa gattaaaaat gacaatgcac gagacaactg acagactttt
      421 tgagatagcc aaagagcagg gagttttaaa gccggctgac atagcagagc gtctgaatat
      481 cagccaacag gctttgaaaa actgggaaag tcgtggcata gcggcaaagg cgctgcctga
      541 agtagcaaaa gcattcggtg tatctgaaac atggctgaga acaggtgaag gcagccgaac
      601 cgcgcccgtc cttattgacc ccgacctacc ccacgaagtc aaagacatcc accgcccgat
      661 gacgtggagc agcaacgacc cgctgcccga cgatgattat gttttcgtcc cctacctcaa
      721 agagagctgc ttcaaaggcg gagtaggcac gtatgaaatc cccgattaca acggctaccg
      781 cctgccgttc ggcaaatcca cgcttaaacg caaaggcatc aatcccgaca acgtgttttg
      841 ctgcaccctg accggcgaca gtatggagga aaaaatcgca gaagacgcgg caattgccgt
      901 agatacgggc gaaaccgcca tacgcgacgg caaaatctac gccttcgccc aggacggtat
      961 gttccgcgtg aagtacctga tacggcagcc tggcaacagc gttctgatac gcagccacaa
     1021 cagcggtttc tatggcgacg aaaacgcccc cttggacagc ctgaccgtta tcggcagggt
     1081 attttggtgg agcgtgctgg attgaaaaat gttgctatta cgacgagata atattgatag
     1141 ggctttcaag attgtcaaaa ataggcgttt tgattcccct tggtggcctg gtgagtacga
     1201 tgccggtatg aatttccttg gcgtacaagg agagttgaag gttcacgagc tgcatcacag
     1261 aacagcaacc ctgtgctttg agtggcttgg cgaagtatct gcgccgcgca gaaaagagaa
     1321 ctacaaagac ctcaagccaa atgtattgta tgactttgat ggttccggta agcattttgc
     1381 caaccctgac gcaaggtatc tattgcccgt cggttcaagc ggcttaatct taaaacatat
     1441 ccaaatcgat gacgaagaca ctctgttgcg gctatggtgc gcacgaaata tcccaatgcc
     1501 acaccggcta tctaaaatcc cgatgcttcg gcagtattat ctaagcaagg catggcacga
     1561 aatttatgct atcaaccaac acctaaggaa aacgaagctg atagttgatg tggcatacga
     1621 ccccacagat taaacaaccc gcccgcatta tgcgggcttt tttcatgccc cgccgaacct
     1681 gaaaacaaca caaaaccgac aaagccgcct taataggcgg tttttttgcg cctgcgaaat
     1741 ctcaaaaata aattctttta ataatcaaaa tgtttataaa ccttaaacaa aaatcttaaa
     1801 cagattgttg catattatta aacgctatgt ttaaatacac ccatcgaaac aaacaacagc
     1861 cacatggagt accgacatgg aaaccatcac catccctaaa gaaaatttcg acgctttgct
     1921 aaatctcgca agaaccgccg tcgccctgaa cgaaaatttt attccaaaaa taaattacgg
     1981 agcatccacc ataccagcag ccggctttgc cgcacttaac gagtttggaa tagcccgctc
     2041 caccgtggaa tctttggaaa ttctcaaaat taaataacct cctcggtatt gtcatcccgt
     2101 gataccggca acctaactaa cctctcttta aaggaaaatc aaaaatggaa acccaagaaa
     2161 agaaatttgt tcctgcctcc aagcaaatac cgaccgtaaa tagcggctgg ttagaccgtg
     2221 aattaggcga agccatgagt gaagcggtgc gtgcctgcct tgctcacggt aaacagtcag
     2281 aaattactgt caagctcaaa atccaacccc aaaacatcca aagcggaacg gtaaaaatca
     2341 gccacgatgt agcaaccaaa ctgcccaaag aaaaacgcga aggcggcatc gtctttgcta
     2401 cacctgacgg caacatccaa gccgacgatc cggcacaagg aaaattgaaa ctcaaacaag
     2461 tttccaatac gtcaagcacg ttgaaaatgg tcagatccaa ctaactcaaa cacaaaagga
     2521 aatctaaaat ggaaacccaa gaaaacatga ttaaaaccgc cttacaagca gctcaaaaac
     2581 ctttttttga gtttgcaccg aacaatactc cgcttgtatt cacaccagac caagacggtg
     2641 gctggagata caaatcacac cccgaattga tgcaaaaccc gtaccgcaag tgcggcaaat
     2701 tcctcatgca cgataccgcc agtcttatta agtttgtaca aaaacacaaa caggacggca
     2761 cacaaatcta cattgatgcc gatttcaaat cagggcgtat tgatgtcacc gccgtcatca
     2821 atggccatac gcaacaagct ccgggctggc tcgattttta tgccgtatac accccgcaac
     2881 acactacatc ggcatccaac tggctgaaca acaatgcgca ccgcatgaat cagatggagt
     2941 tttcccattt cctgaccaac aatgcccgca acatcgtatc caaaaatccc ggtaacgaaa
     3001 attccgttta cccgaccgcc gccgaagtat tggatttcgc gctcaatctc gagtacaccg
     3061 aaaaaaccac cttcaaacaa ggctatcgtg aacaggacgg cagaatcaac tttaccttcc
     3121 aatccgaaga ctcagggcaa acagagaaaa acctcaaaat gtttgaacgt ttcggcatcg
     3181 agttcacccc gcatcaaggc ggtgcatcct actttgttga agccctgttg aaattccgca
     3241 tcgacaaaaa cagcggcgca ctcgtcctgt ggtacgaatt gcagcaaatc gatgctgtaa
     3301 tcgaacaagc ggcaaaagac atttccgaag ccgtacaaaa agccttccct gaaatcgaca
     3361 tctatttcgg cgtaatcgcc taaaaaaaag tcgtctgaaa tcgtgaacct tcagacgacc
     3421 tccacaaaaa cccaaatccg aaagacccca aaatgaccat cacagaagaa tactccatcg
     3481 acatccgagt aacctcagaa caggggaaaa acgactacgg ctaccccacc gaacgctacg
     3541 gatgcgacat catcaacaca gacggggagc tacttgtcgg catagagcca gagtacaaaa
     3601 ccccctttgc cgccgtcaga aaggcgctca tctgtctgac aaaagacaac ctcaaaaacg
     3661 ctgcctgata ttaagccgtt accccaataa tgaggaatca aaatgaaata cttgatccgc
     3721 accgccttac tcgcagtcgc agccgccggc atctacgcct gccaaccgca atccgaagcc
     3781 gcagtgcaag tcaaggctga aaacagcctg accgctatgc gcttagccgt cgccgacaaa
     3841 caggcagaga ttgacgggtt gaacgcccaa atcgacgccg aaatcagaca acgcgaagcc
     3901 gaagaattga aagactaccg atggatacac ggcgacgcgg aagtgccgga gctggaaaaa
     3961 tgaactttca ggaagaaaac gagaacatca agaatgacat agagattaat ctcttgcatt
     4021 ccgctgaagc cgacagcgtg gaggcaatga tggacttggc ggtttacggg ctggcggcga
     4081 tggttgccaa acacaacaaa acgcgcggcg agcagcttgt gttacaggcg attgccggtc
     4141 atatgcggaa gcttttggcc gcgcttcccg aaaccgagtc attggtgcag accgggaagg
     4201 tttaccgccg acttgaagat ttgattttta aaacgtattt gccggagcag taaagatgaa
     4261 cacgaatcaa gatacgattc catttggcgg caaccttgtg atttgctgtt cgacgggaaa
     4321 cggcggggac gggcggtttt cttgtctgat taccgatcag ataccggatt taaatcttgt
     4381 cagaagcggg caggcgttcc cgatgttcat ttatgagtac gaaactagag aaaaaaggaa
     4441 agcctgatgg acaccctatt aaaaatcatc atcgcgctgt cattttccgg cgctgaggca
     4501 ttggtggtat ggcttttcat cacggccgcc gatgccgtat tacgccgctt ccagaaaccg
     4561 agtcattaca ggagagtaaa aaaatgaaca tcaacgaact gggcgcaagg atagaccgcc
     4621 cgaccatccg cgaactgatt gcctacgcaa cctgccgcaa ccgccccatt tcaaactcga
     4681 cactgctgcg tatggaaaaa gacgggcgga taccgtgccg tctgaaaacc ccactcacat
     4741 cccccgtatg ggacacccgc gaagttttgg aagccctggg gttacagcaa taaaaaaacg
     4801 cccgattagg gcgttttcac attcagacgg cttttgtatt ccctactgca tcaaaccgac
     4861 gacaggttgc ggatttcggg cagcatcggg cggatttttg ccgcgtgttc cgcgtcggcg
     4921 tgtgcgttta aggcttcgag ggcgtttgcg gcggctttga ggcggctgcg tgtttccgcc
     4981 cagaccgtcc acatcgttac cgcctgtttg cagccgagct gcttcagcgg cagggaaacg
     5041 tctctgccca tttggatggc ccacgcgccg tatctgacgg caacggcgag gtcgtacagg
     5101 gcgttgccgc tgatgggcag ggcaggttgc ggtgcgggca atggttcgcg gtcgaggact
     5161 tcgccgtaca gcacgccgtt ttcaactgcc acgcggccca tcacgcttaa aacttcgggg
     5221 aactgttcgg caggtacttc tttgtagctg catccgaact tgcttttgac ggcagaccaa
     5281 agggtaatgg cgatacgcgc ctgcgcttct ttgggtgcgg atttggtcag ggcgttgtgc
     5341 agttttttga cggcttcgat ttgttcgccg gtcaagccgt ccggaagggc gcgggtgggt
     5401 ttgggggtaa ctgtttttat gccgtctgaa attttgccgt taagtaaaat ttcaatctgc
     5461 tcatcgcacc aaaccgcaaa tttcggatta agccaacggg caaagtgaat agcgagtttg
     5521 ggatgcagcc atgtgccttg ctcactgcca ccacgcttca cgataactat ttgatttgct
     5581 tccgttagga tttttctcct aacgcttaaa ttctcagcaa gtgcagagat atattgttga
     5641 gtttgttcac tttttaggta gtctttaggt aacttgccaa agtgagatgc aatggcggtt
     5701 gcatttaaaa aaccgtcttg acggaaagat acaggggtgt taccaaaatt gagaacagat
     5761 acgttcatga tagtttccta gtttagtttc gaaagaccca aatgggtggt cgggaggttc
     5821 gaaaacctac tagaaaaggc cggcgttatt ccccttgcgg gtattgtatt ccgcaccctc
     5881 ccgaccatag gaaactagtt cggatatatc gaaacaaaca accaaacaag aaaacttatg
     5941 gacgtaaaaa attcacgctg acggggtaaa tgccgttcta gtagaggttt tcgacgcctc
     6001 gtgtttcgta atatatccaa tctttctatt ttctgcaagc ataaaaaagc cgccatgtgg
     6061 cggatagggt cgcggtcttc aacagcatgt aggatttagg aatgcccaaa ttgggcgcag
     6121 gggtgttgaa aacacgcaaa caggcgcgcc gccagcctta cgggtaggcg cacccccaca
     6181 taggagtaaa tcgatttgat acgtatagac gtaaaaaatt ccactctatc gtgttggata
     6241 tacgctgttt gtcaggtgtt ttcaagcacc gtggggaata ttatatagag ttatggaaat
     6301 gtgtcaagag aattagccca aatgggcgga cgcgcggtta agaacccaca taggagggcg
     6361 gacttattcc cctttcgggt cttgtattcg tcgcccacgc ggtcatagaa acttcctgct
     6421 atcgaaacaa acaacaagga aagaaaacta tagacatgaa aaaatcacat tgacggagtg
     6481 attgccgctg tagtgtggtt tctgacgcca cgaacaggaa tataaaacaa aaccccctgc
     6541 acatgcaagg ggtttcccaa aaaaccgtag gcggcaaact gaaaggccgt ctgaatttca
     6601 gacggcctat gttgcggcgg atgttaagct attaagctat ttggttttca gaggcttttt
     6661 cttccatttt cgggctacgg cttcaaattc ttgaaaggcc gtcggtgcgc tcctgatacg
     6721 gcgtatttca aaaataaagc tgcttaggtt gtcccagtca cgtaacagca tggagtattc
     6781 gaaatcttta tacattttct cgtgcagtgc tccgcctaat acgcccgcac agacaaattc
     6841 gcgctggttt aaaactgtca gtatggcttc acggtctttc ttcttgtccg gggtatccga
     6901 tgtataggtg gcgagtatgc atccgtctgt ttttgccagc ccgtttacta tggttatggc
     6961 ttcttgaagg gcggcattgt tacgttcggc catgatcagc gcgctttttg gcgttttctg
     7021 tattcctcat gatgccgtaa gcggcaacaa aaacgccgat aacagtcaat atcggcgttg
     7081 ctatctgtat taggttgtca gtcattgccg tcccagccgt ctgaaaggcg gaaatcacgg
     7141 ctttccgaat aaatatgtcc cattgtcatc cccttaagct gatgttgaaa ataaatcctt
     7201 gcgtcggaat atacggcatt gcttgactat tttcaagatt ctgtacctcg tgaaccggac
     7261 tatacaaaaa aaccgccttc gtgtaaagcg gttcttaaat cgcccgttaa ggcggacaca
     7321 acgatagcca aactggaaca ggaggcggca aaggcgggtt tgtccaaaac agccttgatt
     7381 gaaaggctga ttggggattt gtaggcgttt gcagatacga caaggggcgc attccgcgcc
     7441 ccatcacacg cacggacggc ttgtcatcgc ctgtcgcccg tgcgcggctg cccatatttc
     7501 agaacagtct tgcaagcccc tttaagggaa cggttttatt ctagtacagt ttgaatgcct
     7561 tggcaacggc tgttttaatc gcctgaaaat cctcttcact gattattgga atgcagcggt
     7621 cgcgcccttt gggtttgtat cggtctaatc gtgccaatcc gactgttgcc gtcatgtcgc
     7681 attttgccca acattggatg tgcggcttgt ccggtaaggg gtttccactc attttgtggt
     7741 ggtagtccgc caaagggaca ggttctgtgc tgcttaaggg tacgaccgtt accagtttgc
     7801 cgttgtgcct gtttcgcgct atgacgacga cagggcgttt cttgaccatt tccggttctt
     7861 cataaccgcg aaagtcgcac atgataaccg aacgttccct tggttggaat tttaaaggca
     7921 ttagccgctc ctgacgatga caggctgcta ttatagcagt tcttacacaa aaaaccgcct
     7981 tcgtgtaaag cggttgcaaa aaagccttcc aataaaaatg cggaaacggt tttttatttg
     8041 cgtttccgca taatacaaac acacacacaa aaaaaaatca ttttccgttt ttggcaagcc
     8101 tcaaaacatc attcccccac cgttccagcg catccttacg ctcctcccaa agctccgagc
     8161 ggttgtaagc cgtttgcgtc ctcgtcccca acgaatgggc aagcagcttt tccgccacat
     8221 cattatccac cttcagaacc tcgcgcaaat aagtacgcgc aagcgagcgc aaaccgtgcg
     8281 ccgtcgtatc cagccccgcc cgctgcatcg ccacgcgcgg actttcctta ttgatatgcc
     8341 cttgaaaatt cacactttca aacacaaacc gcccgttcac attcaacgcc cgcgcctgat
     8401 ccaacaccca ctgcatcgcc cgcgacagcg gcacatcatg cccccgccgc tcctttttcc
     8461 gttcggcggg gatacgccaa acctccccgt ccaactccga ccactccatc aacgccgcct
     8521 cctgaatccg cgtcattgtc aacagcagcc aatagataca aagccgcgtt acaggatgga
     8581 tacgcaccct gcccgcataa accgcaaatt cattgcgctg ctccaaaaaa tcaatcaggc
     8641 gcggcaattc agacggactc aacgctgcca tattccccgt tttcgcccgt tcaaacacac
     8701 ccgaaccgat ttgcgcgaca gggttgattt ccatcattcc cgaaccgacc gcaaacgcaa
     8761 acaccatctt cagactgttt ttcgttttgc gcaacgtatc aacgataccg cgcgcctcca
     8821 tcacacggag gcagccgacc acatccgccg tcctgacctg gcgaatatca agattgccga
     8881 tagccggaaa aacccaccgt tcaaaattcc gcataacctg tccggcatac ttttcagacc
     8941 gccccttcga ccaacgcaca aaccaatcac gcgtcacctt ctcaaaagca aaatccgccc
     9001 gcaccttctt attgacgaca ttttccccgt gcgcccgttt tcggcgcacc tcctcccgcc
     9061 attcccgcgc atcggccagc gaaaaatcag gataccgccc cagcgaaatt gtctgctgcc
     9121 ttccatcctg cacaaacgac agcttccaac tccgcccgcc cgtcgggtag acccacaaag
     9181 ccagcccgcc cccgtctgac aacttataca gcttatcgcg cggcttcgca tttttaacct
     9241 gatttgccga cagcggcgta atgattttcg ccattatggt aatttcccac ttatccaaaa
     9301 attaccatat acattaccat aaaaaaatgc aataagaaga taccgcaaga ttgcaaatga
     9361 tttactttga cgcgttttga tagggcaaac cgatgatttt tatatggtaa ttgacacaac
     9421 ttgaacaaaa aagaaccgcc ctgaatcagg gcggttttgt tttctggcgg aaacggtggg
     9481 attcgaaccc acggaggatt tgcaccctca gcggatttcg agtccgctgc attcagcctc
     9541 tctgccacgt ttccgaaaga tgtttcaacc taaaaggaaa cacgatgaag taaaaccaaa
     9601 taaaaatgcc gatgctttat gctacttcat ttttatttgg tttttgacct caaggattgg
     9661 cggaagcggt gagattcgaa ctcacggagg gctatcaacc ctcgacggtt ttcaagaccg
     9721 ttgcattaaa ccgctctgcc acgcttccgt cttcttgaag agtaggaata ataatgaagt
     9781 ttatacattt tgccaagcac ttttttcgga aaatacttaa tttattgttt tcattttatt
     9841 tgttccgaac gcataaaaac ccattcgctt tcatttgaag ccgcgtcatt gaatgcgtag
     9901 ccttcgtaat taaaattttt cagcatttca gggtcggtaa tatgatgttc taccgcatag
     9961 cgcaccatta atccgcgcgc gcgcttggca tagaaactga tgattttata tttaccgttt
    10021 ttttcgtctt taaatatcgg ggtaatcagc cgcgcccgaa gttttttcgt gttgacagac
    10081 ttgaaatatt cctgtgaggc aaggttgaca agcgtattgc tgcctgcttg ggcaagcgtg
    10141 tcatttaaaa ggttggtaat gatgtcgccc caaaactcat acaaattctt gccgcgcaaa
    10201 ttggcaaatg ccgtccccat ttccaaacga tagggctgta tcaggtctaa cgggcgaaga
    10261 agaccgtaca gaccggacag caggcggaca tggttttgca gatagcgtat ctgtccaata
    10321 tccaatgtgt ttgcatccat accttcgtaa acatcgccgt tgaacataaa gaccgcctgt
    10381 ttggcgtttt ccggcgtaaa cggcgtgtgc cattctgcat tgcgctgcgc gtttaagagg
    10441 gcaattttgt cggaaacgtg catcagttcg gcaatctgtt gcggcgcaag ctcgcgcaac
    10501 tgctgcatta gaatgtcgga ctctgccagc aggtcgggtt gggtaaactc gctgacaggg
    10561 gcagggtctt tttcgttaag gtttttcgca ggggaaagga caaaaaacat aatctgctcg
    10621 gtatagtgtc aaacacgggg attttaagtt taaacgtgtt tgcgggcaag ccgattagat
    10681 taaaagtgaa gtaaataccg ttacagcaaa ttcaaccgta agatattgaa aaatgccgtc
    10741 tgaacaaaag ttcagacggc atttttttat tctttaccga tatagggaaa caatggtttc
    10801 cgcagctttg acacaagttg cgacatcggc aaccaaagcg atacgcacat aaccttcccc
    10861 gggattgccc tgttcggtat cccgtgccaa aaagcgtccg ggcaatactt ggatagcggc
    10921 tttttgccat aaattgcgtg caaatgccaa atcgtcgcca tcggggactt tcaaccaaat
    10981 gtaaaacgag gcatctggta atttaacatc aaatacctgt tgcaaaatgg gaataacgcg
    11041 ctcaaatttt tcctgataca ggcggcggtt gtcgataacg tgctgttcgt catcccaagc
    11101 ggcaatgctt gcgcgctgca cgggaatgct cattgcactg ccgtgatagg ttctgtaaag
    11161 cagaaagttt ttaagcagtt cggcatcgcc ggcgacaaaa ccggaacgca ggcccggaac
    11221 gttggaacgc ttggacaaac tggtgaacat aagcagtttt tgcctgcttc gacccaactg
    11281 tgcagcggcc tgcaggcagc ctaaaggttt gttgccgtcg aaatagattt cggaatagca
    11341 ttcatccgag gcaataatga aaccatattt atcctgtaaa tcaaaaactt ctttccatcc
    11401 atccaaatcc agcacgctgc cgctggggtt gttgggcgag cagacgaaca ccagtttggt
    11461 gcgtttccaa acctcttcgg aaatactacg ccaatcgggg ttgaaagacg gcgcggggca
    11521 attggcaaaa tggatttcac cgccgcccaa aagtgtcgca ccttcgtaaa tctgataaaa
    11581 gggattcggg ctgacaattg cgggtttgat gccgtctgaa acagggtcca acacggtttg
    11641 aacaaaagaa aacaacgcct ccctactgcc taaaaccggc agaatttcat tatccgcatc
    11701 cactgtcaag ccatcataac ggcgttttaa ccagttcgca cacgcctgac gcagttcagg
    11761 caaaccggcc gtcagcggat atttttccaa ctcgtgcaat gaggcggtca gcgcatctgt
    11821 aatgactttc ggtgttggat gtttcggttc gccgatatgc agtgggacgg cttccagacc
    11881 ttcgggggcg gaaatgccct gcatcgcttc acgcagtcgg gcaaagggat agggtttgag
    11941 ttggttgagt aaggtattca taatgttctc cggttgtcgg tatatcggaa gatatgccgt
    12001 ctgaacctga cggcacccat cagacggcat tttatattca atgcaaaccc gtactgccga
    12061 aaccgccttc tccacggctg cttccgacaa attcttcgac acgtttgaaa cgcgcctgca
    12121 cgattggaac gataaccatc tgcgcgatac gctcaaacgg cttgacggca aacggttcgc
    12181 tgcttctgtt ccataacgac accttcaatt ccccttgata atcggagtca atcaaaccga
    12241 ccaaattgcc caaaacaatg ccgtgtttat gccccaagcc ggaacggggc agcaaaacgg
    12301 cggcatatga aggattggcc aaataaattg ccaaacctgt cggcacaaga aacgtttccc
    12361 ccggctgcaa gacgacttcc tcatccaaac aggcgcgcaa gtccaaaccg gcagaacccg
    12421 ctgtcgcata ggtagggata aaatccgcca tcctctcgtc caatactttc atttctactt
    12481 caatattcat cgtcttgctc ctgcatacgg ccggtttcaa agatgggaga ttatacacaa
    12541 gccatgttta cgctgaaaca cagcaaatcg gttttgtttt gaaatccgtt gccaatgtat
    12601 aatacccgcc cttccggtta tgaagacgaa cattatgcac acactaaggc aacttatcag
    12661 aaatgactga aactcaaaaa actggattcc cactttcgtg ggaatgacgt ggtgcaggtt
    12721 tccgtacgaa tggattcgtc attcccgcgc aggcgggaat ctagacctgt cggtttcggt
    12781 ttttttggct agtgccgcaa cattaaattt ctagattccc actttcgtgg gaatgacggg
    12841 a
//
LOCUS       DAXHNP010000045        12738 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.045, whole genome shotgun sequence.
ACCESSION   DAXHNP010000045 DAXHNP010000000
VERSION     DAXHNP010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12738
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.045"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(143..233)
                     /locus_tag="ACFM5C_000924"
     tRNA            complement(143..233)
                     /locus_tag="ACFM5C_000924"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(197..199),aa:Ser,seq:gga)
     gene            complement(269..355)
                     /locus_tag="ACFM5C_000925"
     tRNA            complement(269..355)
                     /locus_tag="ACFM5C_000925"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(319..321),aa:Leu,seq:cag)
     gene            complement(391..477)
                     /locus_tag="ACFM5C_000926"
     tRNA            complement(391..477)
                     /locus_tag="ACFM5C_000926"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(441..443),aa:Leu,seq:cag)
     gene            566..2941
                     /gene="rnr"
                     /locus_tag="ACFM5C_000927"
     CDS             566..2941
                     /gene="rnr"
                     /locus_tag="ACFM5C_000927"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HFC6068659.1"
                     /translation="MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVP
                     SKIESLARELSITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHK
                     DGFGFAVPLTPAKDGDFVLYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQ
                     SKVVGRFYMDRGVAILEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRP
                     AVAKIIEVLGDYADSGMEIEIAVRKHHLPHQFSEACAKAAKKIPDHVRKSDLKGRVDL
                     RDLPLVTIDGETARDFDDAVFAEKIGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTS
                     VYFPRRVIPMLPENLSNGICSLNPNVERLCVVCDMVITYAGNIKEYRFYPAVMRSHAR
                     LTYNQVWKWLSGGIGHPFKTQIDTLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGK
                     IEKIVPVVRNDAHKLIEECMLAANVCAADFLLKNKHTALFRNHLGPTPEKLATLREQL
                     GLLGLQLGGGDNPSPKDYAALVEQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLA
                     YEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPKKSWQALGVHTSFCERRADDASRD
                     VENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDGIHIDGLVHISDLGEDYFNFRPE
                     IMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLIAGGSGRGRKVKSSASAKPAG
                     TAGKGKPKTAAEKKTARGGKVRGRGASAAAESRKKAKKPVPIKVKKRKGKS"
     gene            complement(2936..3133)
                     /locus_tag="ACFM5C_000928"
     CDS             complement(2936..3133)
                     /locus_tag="ACFM5C_000928"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068660.1"
                     /translation="MPSERRLRPVCRIPLAFKTAVEINAIFQYGRFDWPEMMRRPPTS
                     KNRVEASGKYAPPPQAAPSAL"
     gene            complement(3280..4743)
                     /gene="guaB"
                     /locus_tag="ACFM5C_000929"
     CDS             complement(3280..4743)
                     /gene="guaB"
                     /locus_tag="ACFM5C_000929"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003767939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFC6068661.1"
                     /translation="MRIVEKAYTFDDVLLVPAHSTVLPRDVKLQTKLTREITLNLPLL
                     SAAMDTVTEARLAISMAQEGGIGIIHKNMPPEMQARAVSKVKRHESGVVKDPVTVAPT
                     TLIREVLEMRAQRKRKMSGLPVVENGKVVGIVTNRDLRFENRVDLPVSAIMTPRERLV
                     TVPEGTSIDEARELMHTHKVERVLVLNEKDELKGLITVKDILKTTEFPNANKDSEGRL
                     RVGAAVGTGGDTEERVKALVEAGVDVIVVDTAHGHSQGVIDRVRWVKETYPHIQVIGG
                     NIATAKAALDLVAAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIHNVAEALKGTGVP
                     LIADGGIRFSGDIAKALAAGAYSVMLGGMFAGTEEAPGEIELYQGRSYKSYRGMGSLG
                     AMSQGSADRYFQDKTDSADKYVPEGIEGRVPYKGPIVNIIHQLTGGLRSSMGYLGCAN
                     IAEMHEKAEFVEITSAGMSESHVHDVQITKEAPNYHR"
     gene            complement(4883..7441)
                     /gene="glnD"
                     /locus_tag="ACFM5C_000930"
     CDS             complement(4883..7441)
                     /gene="glnD"
                     /locus_tag="ACFM5C_000930"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HFC6068662.1"
                     /translation="MPANLSSALETFKRQRDAAEAHYLKANRVSVFFREYTAAVETLL
                     AALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLW
                     DCKLMPSVKSGSVDELCESVRNDITGDTAFLEARFLFGNRQTVDKLAEKMNAQRNVAA
                     FVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATDLPDLLK
                     QRILTRAEAGMLSHGYRRLAHIRIHLHLNAKRAEDRLLFDLQPQVAESMGYEGLNLRR
                     QSEELMRVFYRAIKTVKQLGGILTPMLQSRVSSTPLRVTLRIDDDYIQINNQIAARHT
                     DIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNSENRHRFAGF
                     FRNGNGLTQTLRFLNLYGVLGRYLPAWEKIVGLLQHDLFHIYPVDDHILTVVRNVRRL
                     ALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHF
                     LTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDI
                     RGTNPKLWNAWRASLLESLFHAAGRYLAGNGGNPHALFGRRQQEAADLLTRAAVPEKQ
                     QKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPKSDSFQVMVFMPNGP
                     RLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAEL
                     NSFIHGHTVAETSNHSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLA
                     DMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSPDLNNPKIQSSLKQTLLEQLS"
     gene            complement(7489..7809)
                     /locus_tag="ACFM5C_000931"
     CDS             complement(7489..7809)
                     /locus_tag="ACFM5C_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6068663.1"
                     /translation="MMGNKLTPPAKLPDEQDLRAVLAYNMRLFRVNKGWSQEELARQC
                     GLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTNSADTRQMPS
                     ESGI"
     gene            complement(8134..8607)
                     /gene="bfr"
                     /locus_tag="ACFM5C_000932"
     CDS             complement(8134..8607)
                     /gene="bfr"
                     /locus_tag="ACFM5C_000932"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6068664.1"
                     /translation="MKGDRLVIRELNKNLGLLLVTINQYFLHARILKNWGFEELGEHF
                     FKQSIVEMKAADDLIERILFLEGLPNLQELGKLLIGESTEEIIACDLTKEQEKHEALL
                     AAIATAEAQQDYVSRDLLEKQKDTNEEHIDWLETQQELIGKIGLPNYLQTAAQED"
     gene            complement(8635..9099)
                     /gene="bfr"
                     /locus_tag="ACFM5C_000933"
     CDS             complement(8635..9099)
                     /gene="bfr"
                     /locus_tag="ACFM5C_000933"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6068665.1"
                     /translation="MQGNQAVVDYMNELLSGELAARDQYFIHSRLYSEWGYTKLFERL
                     NHEMEEETTHAEDFIRRILMLGGTPKMARAELNIGTDVVSCLKADLQTEYEVRDALKK
                     GIKLCEEAQDYVTRDLMVAQLKDTEEDHAHWLEQQLRLIELIGEGNYYQSQL"
     gene            complement(9562..10545)
                     /gene="lipA"
                     /locus_tag="ACFM5C_000934"
     CDS             complement(9562..10545)
                     /gene="lipA"
                     /locus_tag="ACFM5C_000934"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HFC6068666.1"
                     /translation="MSEIKTDDPKRGIKLRGADKTARIPIKVVPLQEKLKKPEWIRAK
                     LPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMIMGDICTRRCPFCDVG
                     HGRPNMLDPDEPKNLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPN
                     TKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARPGANYQHSLDLLKR
                     YKEMMPHIPTKSGIMVGLGETDEDVREIMRDMRAHNIEMITIGQYLQPSDGHLPVLRY
                     VTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQATEALRESHGGCGHH"
     gene            complement(10538..11161)
                     /gene="lipB"
                     /locus_tag="ACFM5C_000935"
     CDS             complement(10538..11161)
                     /gene="lipB"
                     /locus_tag="ACFM5C_000935"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HFC6068667.1"
                     /translation="MKIIHKGLVEYLPTFEAMKTFNAGRNADTEDELWVVEHPPVFTQ
                     GLVGKPEHLLIRDDIPVVQIDRGGQITYHGPGQLVVYTMIDFKRRKTSVRNIVSALEN
                     SIIATLAEYGIEAAADPKRPGVYVGERKIASLGLRIKNGSVYHGLALNVNMDLSPFTH
                     INPCGYAGMEMTQIADFVQPCPTPDEVAAKLTAHLETQFTPKADNNE"
     gene            complement(11163..11438)
                     /locus_tag="ACFM5C_000936"
     CDS             complement(11163..11438)
                     /locus_tag="ACFM5C_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HFC6068668.1"
                     /translation="MTEQENKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDT
                     QAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHELVKVVL"
     gene            11623..12693
                     /locus_tag="ACFM5C_000937"
     CDS             11623..12693
                     /locus_tag="ACFM5C_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFC6068669.1"
                     /translation="MYRRKGWGIKPWMGAGAAFAALVWLIFALGDTLTPFAVAAVLAY
                     VLDPLVEWLQKKGLNRASASMSVMVFSLILLLALLLIIVPMLVGQFNNLASRLPQLIS
                     FMQNTLLPWLKNTIGGYMEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSI
                     GNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVM
                     LIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGSWNGI
                     LSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAA
                     VTLVLLREGVQKYFAGSFYRGR"
BASE COUNT         2699 a         3039 c         3736 g         3264 t
ORIGIN      
        1 ataccgcaaa acataccaca aaaaacggta acggatagtt gtaagcggtt gatgacgatt
       61 atagacaata acgggttttc ccaatgaaat tattgtttga ataataaaaa atcccaaacc
      121 gtaaaagttt gggatttgta tttggcagag aggaagggat tcgaaccctc gatacgctat
      181 tcacgtatac acgctttcca ggcgtgcgac ttaaaccact catccacctc tctaatggcg
      241 gaaattatcc caatcggaat aatttatttg gtgcccggga gaagactcga acttccacac
      301 ccgtgaggat accagcacct gaagctggcg cgtctaccaa ttccgccacc cgggcaatct
      361 aaatattgaa ataaagcaaa gcatttgatt tggtgcccgg gagaagactc gaacttccac
      421 acccgtgagg atactagcac ctgaagctag cgcgtctacc aattccgcca cccgggcttt
      481 gctttatttg ctgttttgcg gtacagtgtc ctgccgcaaa gaagtcgcta ttatatagtt
      541 cataaagaga atgtcaacag tccaaatgaa taaaaatatt aaatctttaa atttacggga
      601 aaaagacccg tttttaagtc gtgaaaaaca gcgttatgaa catcctttgc ccagtcggga
      661 atggataatc gaattgttgg agcgcaaagg tgtgccttca aaaatcgaat cgcttgcgcg
      721 cgagctgtcg attacggaag acgagtatgt ctttttcgaa cgccgtctga aggcgatggc
      781 gcgggacggt caggttttaa tcaaccgccg gggcgcggtt tgcgcggcgg acaaattgga
      841 tttggtcaaa tgccgtgtcg aggcgcacaa agacggtttc ggttttgccg tgccgctcac
      901 gcccgccaaa gacggtgatt ttgttttgta tgaacgccag atgcgcggca ttatgcacgg
      961 cgatattgtc actgttcgtc ctgccggcat ggaccgtagg ggccgccgcg aagggacagt
     1021 tctggatatt gtcgaacgcg cgcaaagcaa agtggtcggc cgtttctata tggatagggg
     1081 cgtggcgatt ttggagccgg aagacaagcg tctgaaccaa agcatcgtat tggaaccgga
     1141 cggcgtggcg cgtttcaaac ctgaatccgg tcaggtcatc gtcggcgaaa ttgaggttta
     1201 tcctgagcaa aaccggccgg cagtggcaaa aatcatcgaa gttttgggcg attatgccga
     1261 cagcggcatg gagattgaaa ttgccgtgcg caagcatcat ttgccgcacc aattcagtga
     1321 agcgtgtgcc aaagccgcga aaaaaattcc cgaccatgta cgcaaaagcg atttgaaagg
     1381 ccgcgtcgat ttgcgcgatt tgcctttggt aacgatagac ggcgaaacgg cgcgcgattt
     1441 tgacgatgcc gtgtttgccg agaaaatcgg acgcaattac cgtttggtcg tggcgattgc
     1501 cgatgtcagc cattatgtcc gccccgatga cgctatcgac acggacgctc aggaacgcag
     1561 caccagtgtt tacttcccgc gccgcgtgat tcccatgttg ccggaaaacc tgtccaacgg
     1621 catctgctcg ctcaatccta atgtcgagcg tttgtgtgtg gtgtgcgata tggttatcac
     1681 ttacgcgggc aatatcaaag aataccgctt ctaccccgcc gtgatgcgct ctcatgcccg
     1741 cctgacctac aaccaagttt ggaaatggct ttcaggcggc atcgggcatc cgttcaaaac
     1801 ccaaatcgac acgctttaca aactcttcaa aatccttcag aaaaagcgtt tcgaacgcgg
     1861 ggcggtggag tttgacagca tcgaaaccca aatgcttttc gacgacaacg gtaaaattga
     1921 aaaaatcgtc cccgttgtcc gcaacgatgc ccacaagctg attgaagaat gtatgctggc
     1981 ggcgaatgtt tgcgcggcgg attttctgtt gaaaaacaag catacggctt tgttccgcaa
     2041 ccatttgggc cccacgcccg aaaaactcgc caccctgcgc gagcagctcg gtctgttggg
     2101 gcttcaactt ggcggcggcg acaacccgtc gccgaaagac tatgccgcgc ttgtcgaaca
     2161 attcaaaggc agacctgatg ccgaattgct gcaagtcatg atgttgcgct ccatgcagca
     2221 ggcggtttac gaaccgcatt gcgacggaca ctttggtctt gcctacgaag catacgccca
     2281 cttcacctcg cccatccgcc gctatcccga cctgaccgta caccgcgcca tcaaagccgt
     2341 gttgaatcag caaacctaca cgccaaaaaa aagctggcag gctttgggcg tgcatacctc
     2401 gttctgtgag cgccgtgccg acgacgccag ccgcgacgtg gaaaactggc tgaaaaccta
     2461 ttatatgcgc gataaggtcg gcgaagtatt cgaaggtaaa atctccggca tgaccagttt
     2521 tggtatcttt gtaacactgg acggcatcca cattgacggc ttggtgcata tcagcgattt
     2581 gggcgaagac tatttcaact tccgccccga aatcatggca atcgaaggcg aacgcagcgg
     2641 catccgtttc aacatggggg acagggttgc cgtccgggtc gcccgtgccg atttggatga
     2701 cggaaaaatc gattttgtcc tgattgccgg ggggagcggc agggggcgga aagttaaatc
     2761 atccgcgtct gccaaaccgg cagggacggc ggggaaaggg aagccgaaaa ccgccgccga
     2821 gaaaaaaaca gcccgaggcg gcaaagtaag aggaaggggc gcgtctgccg ccgcagaatc
     2881 gaggaaaaag gcaaagaaac cggttccgat taaggtaaaa aaacggaaag gcaaatcata
     2941 atgctgacgg ggcggcttga ggaggcgggg catattttcc cgaagcctcc acccgatttt
     3001 ttgatgtggg cggacggcgc atcatttcag gccaatcgaa acgcccgtat tgaaagattg
     3061 cgtttatttc caccgccgtt ttaaaggcca gcggtattcg gcagacgggg cgcaaacggc
     3121 gttcagacgg cattttcatt ctttcggcgt gtccgtccga attgctttgc ccgtccgcgc
     3181 aatcagcccg tgcggcttgc cttgaacgga caaaaaatgc cgtctgaaac ccgaaaatca
     3241 ggtttcagac ggcattttgc cttgaaaagg ctgttcaaat cagcggtggt agttcggtgc
     3301 ttctttagtg atttgaacgt cgtgaacgtg cgattcgctc atacctgcgg aagtgatttc
     3361 cacaaattcg gctttttcgt gcatttcggc aatattggcg caacccaagt aacccatact
     3421 ggaacgcaga ccgccggtca gctggtggat gatgttcaca atcgggcctt tgtaaggaac
     3481 gcggccttcg atgccttcgg ggacgtattt gtctgcgctg tcggttttgt cttggaagta
     3541 gcggtcggca gaaccttggc tcatcgcgcc caaggaaccc ataccgcgat aggatttgta
     3601 cgagcggcct tggtagagtt cgatttcgcc cggcgcttct tccgtgcctg caaacatacc
     3661 gccgagcatg acgctgtacg cgcctgcggc gagggctttg gcgatgtcgc cggagaagcg
     3721 gatgccgccg tcggcaatca gcggaacgcc cgtgcctttg agggcttcgg caacgttgtg
     3781 aatggcggtc agttgtggca cgccgacacc tgccacgata cgggtggtgc aaatcgatcc
     3841 cggaccgata ccgactttga cggcatccgc gccggcagcg accaaatcca aagcggcttt
     3901 ggcagtggcg atgttgccgc cgatgacttg gatgtgcgga taggtttctt tgacccaacg
     3961 cacgcggtcg atcacgcctt ggctgtgccc gtgggcggta tcgacgacaa tcacgtccac
     4021 gccggcctca accaaggctt tgacgcgctc ttcggtgtcg ccgccggtgc cgactgccgc
     4081 accgacgcgc agacggcctt cggagtcttt gttggcattg ggaaactcgg tggtttttaa
     4141 aatatctttg acggtaatca gacctttgag ttcgtctttt tcgttcagaa ccaaaacgcg
     4201 ctcgactttg tgcgtgtgca tcagttcgcg cgcttcgtct atgcttgtgc cttcggggac
     4261 ggtaaccaga cgttcgcgcg gggtcataat ggcggaaacg ggcaaatcga cgcggttttc
     4321 aaaacgcagg tcgcggttgg ttacgatgcc gacgactttg ccgttttcaa cgacgggcag
     4381 gccggacatt ttgcgtttgc gctgcgcacg catttccaag acttcgcgga tgagcgttgt
     4441 cggtgcaacg gttacggggt ctttgaccac gccgctttcg tggcgtttca ctttggaaac
     4501 ggcgcgcgcc tgcatttcgg gcggcatgtt tttatggatg atgccgatgc cgccttcttg
     4561 tgccatcgaa atggcgaggc gcgcctcggt aacagtgtcc atcgcggcgg aaagcagggg
     4621 gaggttgagt gtgatttcgc gggtgagctt ggtttgaagt ttaacgtctc gcggcagcac
     4681 ggtcgaatgt gcgggaacca acaaaacatc gtcgaaagta taggcttttt ctacgatacg
     4741 cataatgctc ggtctttcag tttgtgcaag atgcacggca ttatagcacg ttaccggcgg
     4801 cttgacagtt tatattgttt gcaatatccc cgccttcagg cggcatacgg cgcggcggcg
     4861 gaatgccgtc tgaaagcagg cgttatgata attgttccag cagcgtctgc ttcaatgagg
     4921 actggatttt ggggttgttc aaatcggggc tgaaaacggt aaaactgtct tcggcgcgtt
     4981 cgtccagcgt ggagattttg gcgtagcgca ggctgacgtt gtgggcgaaa aagacttccg
     5041 ccatatcggc gagcaggaag gggcggttga cggcggtaat ttcgacggag taccagtcgg
     5101 gatagtcttc ttcgggggta atggtgatgc ttggcgcgat cggcatgtag cggctgcggc
     5161 ggctgatgcg gcggctgtgg tttgaggttt cggcaacggt gtgtccgtgg ataaagctgt
     5221 tgagttcggc ttcaagcgcg ctttgaatgt cggggtagtc ttcgggggcg tgttgtgagg
     5281 gaatttgcac gatgaaggtg tcgaggatgt agtcgtgttc ggtgataaag gcgcgggcgg
     5341 cgaggatatc gaagccgtgg cggctgaaaa tgcggcagag acgggcaaac aggcgcgggc
     5401 cgttgggcat gaaaaccatg acttgaaagc tgtcgctttt gggcaggatg cggctgcgga
     5461 cgatgggggt ttcaaagtcg tggactaggt tggcggcgtg ccacaggatt tcgcgggact
     5521 ggtggcgggc gaagtaggcg gaaccgagcg cgttccaaag ctttttctgc tgtttttcgg
     5581 ggacggcggc gcgggtgagc aagtcggcgg cttcttgttg gcggcggccg aagagggcgt
     5641 gcgggttgcc accgttgcct gcgaggtagc gtccggcggc atggaagagg ctttccagca
     5701 ggctggcgcg ccatgcgttc cacagcttgg gattggtacc gcgtatgtcg gaaatggtca
     5761 gaaggtagag cgcgctgagg cgttcgtggg tttggacgcg tttgcagaag gcatcgagta
     5821 cgctggggtc ttggatgtct tctttttggg cgacggtgga cataagaaga tggttttcaa
     5881 ccagccaggc gagcaggtcg ctttcttctt cggtcaggaa gtggtcggcg gcaaattggc
     5941 gcgcgtctgc gatgccttgt atggcatggt cgccgccgcg tcctttggcg atgtcatgga
     6001 aaaaggcggc aaggtagagg atgtcttgtt tttcaaagga ctgcatcagt gcagaggcgt
     6061 agggcagctc gtggctgtgc atatccaagg caaggcggcg gacgttgcgg acgacggtga
     6121 ggatgtggtc gtccacggga tagatgtgga acaggtcgtg ctggagcagg ccgacgattt
     6181 tttcccacgc gggcaggtag cgtcccaata cgccgtagag gttgaggaag cgcagggttt
     6241 gggtcagtcc gttgccgttg cggaaaaagc cggcgaagcg gtggcggttt tcagaatttt
     6301 ggtagaagct gcggttgatt ttgcgcgtcg cgccccacca tgcgcgcagg gtttgcggtt
     6361 cgagcgcggt aatatcgttg cgctgctgca tgatttcgac gattttgaaa atgtgttcgg
     6421 gccgtctgaa aaaaatatcg gtgtgccgcg cggcgatttg gttgttgatt tggatgtagt
     6481 cgtcgtcaat ccgcagggta acgcgcaacg gggtggagga aacgcggctt tgcagcatag
     6541 gcgtgaggat gccgcccagt tgtttgacgg ttttaatcgc gcggtaaaac acgcgcatca
     6601 gttcttcgct ttggcggcgg aggttcaagc cttcataacc catgctttcg gcgacttgcg
     6661 gctgcaaatc gaacagcagg cggtcttcgg cgcgcttggc gtttaaatgc agatggatgc
     6721 ggatgtgggc gaggcggcgg tagccgtgcg aaagcatacc ggcttcggca cgcgtcaaaa
     6781 tccgctgttt gagcaggtcg ggcaggtcgg tcgccaagcc ttgcgccttc gctatccaaa
     6841 gcagggtgtg gatatcgcgc agaccgcccg gacagctttt gatattcggc tccaatactg
     6901 cccccgaacc ttgcgatttg gcgtggcggt gttccatctc caccagtttt gcctcgacaa
     6961 acgccgccac attgcgctgc gcgttcattt tttccgccag tttatccacc gtttggcggt
     7021 tgccaaacaa aaacctagcc tctaaaaacg ctgtgtcccc cgtaatatca ttgcgcacgc
     7081 tttcacatag ttcatcaacg ctgccgcttt ttacagacgg catcagtttg cagtcccaca
     7141 gggtttgaac aaaccgggca atctgttcct gaatgccgtc tgaaagcggg gcaggggaga
     7201 caaccgccaa atccacatcc gaacagggat acagttcgcc gcgcccgaag ccgcccaccg
     7261 ccatcaggca taacgcgctg ttttgaaaat gttctaccca caatgccgcc agtaaggttt
     7321 cgactgccgc cgtatattcc ctgaaaaata ccgacacgcg gttggctttc aaataatgcg
     7381 cttcggcggc atcgcgctgc cgtttgaagg tttccagtgc tgaagacagg tttgcaggca
     7441 tttttattct ttcgattggc gggaaaaggg aggtggatgg ttcggcggtc aaataccgct
     7501 ttcagacggc atttgtcggg tatcggcgga attggtcatc agcttcaacc gttcctgcgg
     7561 cggcagcagc aactgatacg ccgccacgcc caaagccgcc gccatttttt cgatattcga
     7621 cagggcgatg ttccagcgtt tgcgctcgac tgccgacaca taagtcctgt ccaaaccgca
     7681 ttgccgcgcc aattcttctt gcgaccaacc cttgttcacg cggaaaagcc gcatattgta
     7741 tgccaatacc gcccgcaaat cctgttcgtc aggcagtttg gcaggcgggg tcaatttgtt
     7801 gcccatcatt tgcttccaga taaatggtta aagttaagca tttgctgtta cggattttac
     7861 ttcacataaa agccaaaaaa aaggggtggc ggcagccaca cccaaacaca cacacatcaa
     7921 gaggaaagag gtaaaatcaa gacagattgg gaaacagcaa acaagcaatc tagatttcat
     7981 atcggtatta tcaaacaaaa accgttatcg agtattgatt caaatcaatt tagatttgat
     8041 tcgcaaaccg gcaaagaaaa acggcatacc cgtttatacg gatatgccgt ctgatgatgc
     8101 aggggactgc tatatttggc agtggtttgt gttttagtcc tcttgcgccg ctgtttgcag
     8161 gtagttcggc aaaccaattt tgccgatcag ttcctgctgg gtttcaagcc agtcgatgtg
     8221 ttcttcgttg gtgtcttttt gtttttccaa caaatcacgg ctgacgtaat cctgttgcgc
     8281 ttctgctgtg gcgatggcgg caagcagggc ttcgtgtttt tcctgttctt tggtcaaatc
     8341 gcaggcgatg atttcttcgg tggactcgcc aatcagaagc ttgcccagtt cttgcaggtt
     8401 cggcagacct tcgaggaaca gaatgcgctc gatcaaatcg tcggcagctt tcatttcaac
     8461 gatggactgt ttgaagaaat gttcgcccag ttcttcaaag ccccagtttt tcaaaatacg
     8521 ggcgtgaagg aaatattggt tgatggttac cagcagcaag cctaagtttt tgttcagctc
     8581 gcggataacc aaacggtcgc ctttcatacg gactcctttt attccgaata cggattacag
     8641 ttggctttgg tagtagttgc cttcgccaat cagctcgatc aggcgcagct gctgttccag
     8701 ccagtgggcg tggtcttctt cggtatcttt cagttgggca accatcaggt cgcgcgtaac
     8761 atagtcttga gcctcttcgc acagtttgat gccttttttc aacgcatcac gtacttcata
     8821 ttcggtttgc aggtcggctt tgaggcagga aaccacgtcc gtgccgatat tcagttcggc
     8881 gcgtgccatt ttcggcgtac cgcccagcat caggatgcgg cggatgaagt cttcggcgtg
     8941 tgtggtttct tcttccatct cgtggttgag acgttcaaaa agtttggtgt agccccattc
     9001 ggagtagagg cgggagtgga taaagtattg gtcgcgtgcc gccagctcgc cagacagcaa
     9061 ttcgttcata taatcaacaa cagcttgatt gccttgcata atatctctct ttctgtaact
     9121 tggttttcgg tatgtctgaa cagcatctgt gtcgctattc gggatgcgtg cattgtatgc
     9181 aaaagctgtc ggcatgacaa attttctatt taaaatacaa acaattatca aaagaaatag
     9241 ggcgtattcc ccgatgcctt ccaaatcagt atgctgtttc ttatcggttt ttttgctgct
     9301 aaaactaaga atccatctca tccataaaga acatttacac ttgttaacca tagctaaaag
     9361 caaatacggt acggtttttt atcaaaattt ataatgaatc gttctcatta accgacagat
     9421 tcttttgaga ttatcggatt ttgggaataa attatgccgt ctgaggggct ttcagacggc
     9481 atagacaatt aaagctgatt aaacaacgcg gcagacagca gcgtaggaaa ttatttttta
     9541 cttcggaacg gtattttggg tttaatgatg cccgcaaccg ccgtggcttt cgcgtaaggc
     9601 ttcggtagcc tgttcgtcgg cgtggtagct ggaacgtacc atcgcgccga tggcggcatt
     9661 gctgaagccc agttcgtatg cttctttttc aaagattttg aactgctcgg gcgtaacgta
     9721 gcgcaggacg ggcaggtgtc cgtctgaagg ctggaggtac tgtccgatgg taatcatttc
     9781 gatattgtgc gcccgcatat cgcgcataat ttcacgcacg tcttcgtctg tttcgcccaa
     9841 gccgaccatg atgccggatt tggtcgggat gtgcggcatc atttctttat aacgttttaa
     9901 taagtctaaa gaatgttgat aattggcacc gggacgggct tttctgtaca ggctcggatg
     9961 ggtttctagg ttgtggttca tcacgtcggg cggggtttcg gcaaggattt tgagtgcgat
    10021 gtccaagcgt cctcggaagt cggggacgag gatttcgatt ttggtgttcg ggctggtttc
    10081 gcggatggct ttgatgcagt cggcgaaatg ctgtgcgccg ccgtcgcgca ggtcgtcgcg
    10141 gtcgacggag gtgatgacga cgtaacgcag gttcatggct ttgacggatt cggcgaggtt
    10201 tttcggttcg tcggggtcga gcatattcgg gcggccgtgt cccacgtcgc agaacgggca
    10261 gcggcgggtg cagatgtcgc ccataatcat gaaggtcgcc gtgcctttgc tgaagcattc
    10321 gccgatgttg gggcaggagg cttcctcgca aacggtgtgc attttttgtt cgcgcaaaat
    10381 gtctttgatt tcaaagaatt tgcgcgatgg aagtttggcg cgtatccatt cgggcttttt
    10441 taatttttcc tgaaggggga cgactttgat ggggatgcgg gcggttttgt ccgcgcctct
    10501 gagtttgatg ccgcgtttgg ggtcgtcggt tttgatttca ctcattgttg tctgctttcg
    10561 gtgtgaattg tgtttcaagg tgtgcggtaa gtttggcggc gacttcgtcc ggcgtggggc
    10621 agggttggac aaaatccgcg atttgcgtca tttccatacc ggcgtagccg caggggttga
    10681 tgtgggtaaa cgggcttaaa tccatattga cgttgagcgc aagcccgtga tagacggagc
    10741 cgtttttgat acgcagcccc agtgaggcga ttttgcgttc tccgacataa acgccggggc
    10801 gtttggggtc tgccgccgct tcgatgccgt attctgccaa tgtggcgatg atgctgtttt
    10861 caagcgcgga aacgatgttg cggacgctgg ttttgcgccg tttgaaatca atcatcgtat
    10921 aaacgaccaa ttgcccgggc ccgtgatagg taatctgccc gccccggtcg atttggacga
    10981 cgggaatgtc gtcgcgaatc agcaggtgtt cgggttttcc caccagtcct tgtgtgaaca
    11041 cgggcgggtg ttcgacgacc cacagttcgt cttcggtgtc agcattccgt ccggcattaa
    11101 aggttttcat cgcttcaaaa gtcggcagat attcgaccaa acctttgtgt atgattttca
    11161 tctcaaagta ccactttgac cagttcgtgc gaagtcagcg cgcggtagat gttgtccaat
    11221 tgttcttggt tttcaacctt tacctgaacg gtggcgccgg tatagttgcc tttgctgctc
    11281 ggacgcgtgg tgatgtggtg cgcctgcgtg tcgggggcgt ggaggcggac ggtgtccaat
    11341 accgcctgct cgaactcggg atgaaccgcc cccattactt ttaatgggaa ggtgcaggga
    11401 aattcgatga gggatgtttt gttttcttgt tcggtcatga tgtgctgcct tgttgtgtac
    11461 ggtatgccgt ctgaaggcgg gtttgccttt cagacggcat cggatgtgcg ttattttagc
    11521 ctaaaccgcg ataacaggct atcgggaagg cggaggcttt tttgacggcg cggcggttct
    11581 gctatactgg cgcgcaatat tatttttaga agggtggttt ttatgtatcg gaggaaaggg
    11641 tggggcatca agccgtggat gggtgccggt gcggcgtttg ccgccttggt ttggctgatt
    11701 ttcgcgctcg gcgatacttt gactccgttt gcggttgcgg cggtgctggc gtatgtgttg
    11761 gaccctttgg tcgaatggtt gcagaaaaag ggtttgaacc gtgcatccgc ttcgatgtct
    11821 gtgatggtgt tttccttgat tttgttgttg gcattattgt tgattattgt ccctatgctg
    11881 gtcgggcagt tcaataattt ggcatcgcgc ctaccccaat tgatcagttt tatgcagaac
    11941 acgctgctgc cgtggttgaa aaatacaatc ggcggatata tggaaatcga tcaggcatct
    12001 attattgcgt ggcttcaggc gcatacgggc gagttgagca acgcgcttaa ggcgtggttt
    12061 cccgttttga tgaggcaggg cggcaatatt gtcagcagta tcggcaacct actgctgctg
    12121 cccttgctgc tttattattt cctgctggat tggcagcggt ggtcgtgcgg catcgccaaa
    12181 ctggttccga ggcgttttgc cggtgcttat acgcgcatta cgggtaattt gaacgaggta
    12241 ttgggcgaat ttttgcgcgg gcagcttctg gtgatgctga ttatgggttt ggtttacggc
    12301 ttggggttgg tgctggtcgg gctggattcg gggtttgcaa tcggtatggt tgccggtatt
    12361 ttggtttttg ttccctattt gggcgcgttt acaggactgc tgctggcaac cgtcgccgcc
    12421 ttgctccagt tcggttcgtg gaacggcatc ctatcggttt gggcggtttt tgccgtagga
    12481 cagtttctcg aaagtttttt cattacgccg aaaatcgtgg gagaccgtat cgggctgtcg
    12541 ccgttttggg ttatcttttc cctgatggcg ttcggacagc tgatgggttt cgtcggaatg
    12601 ttggcaggat tgcctttggc cgccgtaacc ttggtcttgc ttcgcgaggg cgtgcagaaa
    12661 tattttgccg gcagttttta ccggggcagg taggcggttc cgaaacatat ttgaagcggg
    12721 atacaaccct gcccgggt
//
LOCUS       DAXHNP010000046        12329 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.046, whole genome shotgun sequence.
ACCESSION   DAXHNP010000046 DAXHNP010000000
VERSION     DAXHNP010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12329
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.046"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(169..1098)
                     /locus_tag="ACFM5C_000938"
     CDS             complement(169..1098)
                     /locus_tag="ACFM5C_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6068670.1"
                     /translation="MDSIIELRHLKTLLALEETGSVSLAAKRVFLTQSALSHQIRMLE
                     NHYGAPLFERKSTPLRFTPVGERLLRLAHDLLPQVTDAERDLARIIEGEAGELRIAVE
                     CHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNDIS
                     FQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNIN
                     PPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIR
                     TEDTDKSYLNNFCQIIRERGFADLPGLSELEPV"
     gene            1229..1978
                     /locus_tag="ACFM5C_000939"
     CDS             1229..1978
                     /locus_tag="ACFM5C_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFC6068671.1"
                     /translation="MVLRRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVT
                     ASRAAIDFAVEQKADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLD
                     AHPTLGNNAQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVI
                     GKPEREIRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHH
                     ATERYGVRALAESAAEVFGLEVCHFDENNPA"
     gene            2101..2682
                     /gene="petA"
                     /locus_tag="ACFM5C_000940"
     CDS             2101..2682
                     /gene="petA"
                     /locus_tag="ACFM5C_000940"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFC6068672.1"
                     /translation="MDNQEINNGRRRFLTLATCGAGGVAALGVATPFVASFFPSEKAK
                     AAGAAVEVDVSKIEAGQLLTAEWQGKPIWVLNRTDQQLKDLKGLNGELTDPNSDAEQQ
                     PEYAKNETRSIKPNILVAIGICTHLGCSPTFRPDIAPADLGADWKGGFFCPCHGSKFD
                     LAGRVYKGVPAPTNLVVPPYKYLSDTTILVGED"
     gene            2701..4050
                     /locus_tag="ACFM5C_000941"
     CDS             2701..4050
                     /locus_tag="ACFM5C_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFC6068673.1"
                     /translation="MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYY
                     FGSLALLVLVIQIVSGIFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMH
                     STGASFFFIVVYLHMFRGLIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMS
                     FWGAQVIINLFSAIPVIGPDLSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAH
                     IIALHEVGSNNPDGVEIKKNKDENGIPRDGIPFHPYYTVKDILGVVVFLIVFCAVLFF
                     APEGGGYFLEAPNFDAANALKTPPHIAPVWYFTPFYAILRAIPSFLGTQVWGVIGMGA
                     AVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATDTRTLVARI
                     LSFVYFAFFLGMPFYTKLDKNKPVPERVTMSTAKQKIMFFVYVGITAVGAYLFATNI"
     gene            4065..4853
                     /locus_tag="ACFM5C_000942"
     CDS             4065..4853
                     /locus_tag="ACFM5C_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HFC6068674.1"
                     /translation="MKQAMKNWFAALLLAVPMGAAFASGGHAHYEKVDIDLRDQVSLQ
                     RGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDA
                     AKWFGAAPPDLTLIARSKGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQ
                     GVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVN
                     YLVYMGEPAQLQRKRIGYVVMIFLFAVMLPLAYFLKKEYWKDVH"
     gene            5192..6976
                     /gene="rmuC"
                     /locus_tag="ACFM5C_000943"
     CDS             5192..6976
                     /gene="rmuC"
                     /locus_tag="ACFM5C_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HFC6068675.1"
                     /translation="MELMTVLLPLAALVSGVLFTWLLMKGRFQGEFADLNAQLAEKAA
                     RCDFVEQAHAEIASELAVLDGKYRHLQDENYALGNRFSAAEKQIAHLQEKEAESVRLK
                     QSYIELQEKAQGLAVENERLATQLGQEQKAFADQYALERQIRQRIETDLEESRQTVRD
                     VQNDLSDVGNRFAAAEKQIAHLQEKEAEAERLRQSHIDLQEKAQGLAVENERLTTQIE
                     QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERI
                     HGFGELVRQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWG
                     EMILETVLENSGLQKGREYVVQAAAVRKEEDGGTRRLQPDVLVNLPDNKQIVIDSKVS
                     LTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVE
                     PAYLLALQNDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGG
                     KLYDKFVGFVQTLESVGKGIDQAQNSFQTAFKQLAEGRGNLVGRAEKLRLLGVKANKQ
                     LARDLTERANETTALSESLEYAAEDEAV"
     gene            complement(7183..7815)
                     /locus_tag="ACFM5C_000944"
     CDS             complement(7183..7815)
                     /locus_tag="ACFM5C_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6068676.1"
                     /translation="MTLRYEILSVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQAL
                     ANRKLTLTAIWLTHGHLDHAGGVVEMLKTRKVPVLGPHPDDEFLLQSLPQTTAQYGFP
                     VSPAFAPNHWLEEGETLKVGRYAFQVLHIPGHTPGHVVFYCAEAELLIAGDVLFYETI
                     GRTDFPRGNHADLINNIRNKLFALPETVQVVAGHGRMTSIGHEKRHNPFF"
     gene            7906..8730
                     /locus_tag="ACFM5C_000945"
     CDS             7906..8730
                     /locus_tag="ACFM5C_000945"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFC6068677.1"
                     /translation="MIKKTIGGIIPIFMAVFIPASAGAADLMLAQEYKDQEIAGWAMS
                     EKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRS
                     VSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRQHAMDF
                     LKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGA
                     VGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR"
     gene            8799..9362
                     /locus_tag="ACFM5C_000946"
     CDS             8799..9362
                     /locus_tag="ACFM5C_000946"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HFC6068678.1"
                     /translation="MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGG
                     KYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIR
                     GRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVP
                     NRYVFGYGMDAAGCWRNLGEIYALDGK"
     gene            9444..9881
                     /locus_tag="ACFM5C_000947"
     CDS             9444..9881
                     /locus_tag="ACFM5C_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HFC6068679.1"
                     /translation="MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQD
                     DIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAV
                     QYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV"
     gene            9950..10219
                     /locus_tag="ACFM5C_000948"
     CDS             9950..10219
                     /locus_tag="ACFM5C_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HFC6068680.1"
                     /translation="MLKQSIEIINKLGLHARASSKFTQTASQFQSEVWVTKNGSRVNG
                     KSIMGLMMLAAAKGTVIELETDGADEAEAMRALSDLINDYFGEGE"
     gene            10219..11994
                     /gene="ptsP"
                     /locus_tag="ACFM5C_000949"
     CDS             10219..11994
                     /gene="ptsP"
                     /locus_tag="ACFM5C_000949"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HFC6068681.1"
                     /translation="MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAE
                     RFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKIN
                     AEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDE
                     TVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLIT
                     EGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIEL
                     VGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYNAIVKKMKGKSV
                     TIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVH
                     GPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSI
                     LKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVS
                     VCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILHSNVGQLESDIAKVIRCEDE
                     EKSEKLIKQMNSVSVEEEADFKGRK"
BASE COUNT         3017 a         3084 c         3444 g         2784 t
ORIGIN      
        1 tgggcaaaaa tcaaaaacag tatagtggat taacaaaaat caggacaagg cgacgaagcc
       61 gcagacagta caaatagtac ggcaaggcga ggcaacgctg tactggtttt tgttaatcca
      121 ctatacatga aaaaatagaa aaactgccgg gtatggttga ataaggggtc agaccggttc
      181 caattcgctc agtccgggca aatctgcaaa accgcgttcg cgtatgattt ggcaaaaatt
      241 gttcagatag ctcttgtccg tatcttcggt acggatggcg gcatacagtt tgctttgcaa
      301 tccgtcggca gtaatttggc ggtggacgac atagcctttt tcaaggtagg gcatgactgt
      361 ccaataggga agggcggcaa tgccacgtct gctggcaacc agttggataa tggcgatggt
      421 cagttcgctg tgtcggcgcg gcgggttgat gtttttcgga atcaggattt ttttgggcaa
      481 atccagcatc tcgtcgggaa cgggataagt aatcagggtt tccccgataa agtcttccgc
      541 cgtccaaacg tttttggcgg caagcggatg gtctggtgcg caaatgccga ccatttcgta
      601 ggcaaacagc ggttggaaag aaatatcgtt ttgtttttcc gcttcggaaa caatggcaag
      661 gtcggcacgg tgttgcagca gcagtccgac gggatccgct tggaatcccg atacgatatc
      721 caattcgact tggggccaca tcgggcggaa ttcgcccatg gcgggcatca gccagtcgaa
      781 acaggtatgg cattcgacgg caatccgcaa ttctcctgcc tctccttcta taatgcgtgc
      841 caaatcacgt tctgcatcgg taacttgagg caacaggtcg tgagcgaggc gtaacagcct
      901 ttctccaacc ggggtaaagc gcaagggcgt ggattttcgt tcgaacaacg gtgcgccgta
      961 gtggttttca agcatacgga tttggtggga aagtgcagat tgggtaagga aaacccgttt
     1021 ggcggcaagg gagacgctgc cggtttcttc aagtgccagc agggtcttga ggtggcgcag
     1081 ttcgatgatg gaatccatga ggtttcagac ggcatattga accggcgcat attaaaataa
     1141 ttcatatgcg ggtgcaaatc ggaaaaatgt gaattccaga cattttgcga ttagaatgcc
     1201 cgcttgttta aagcgattag gaaaaaagat ggtattgcgc agggattttc tgacttggtg
     1261 taatgaaaca ttgcagacag cgttgtttaa agattacgcc cctaacggtt tgcaggttga
     1321 agggagggaa tatatcggga aaatcgttac gtcggtaacg gcaagcaggg cagcgattga
     1381 ttttgctgtg gagcagaagg cagatttgct tttggtacat cacggtatgt tctggaaaaa
     1441 cgagttgccg accgttactg gttggaaaaa agaacggatt gccgcactgt tacggcacga
     1501 catcaatatg gcaggctacc atctgcccct ggatgcacat cccacactgg gcaacaatgc
     1561 ccaactcgcc gacagattgg gttttgcgac agaaaaacgg ttcggcgaac aaaacctgct
     1621 caactcgggc agcctgaaac aagccaagac actcggcgca ttggcggcgc atattgaaac
     1681 agttttgcaa cgtaagcctg tcgtcatcgg caaacccgaa cgcgaaatcc gacgggttgc
     1741 atggtgcagc ggcggggcgc aggggttttt tcagacggca atagacgaag gtgtcgatct
     1801 gtatttgacg ggggaaatct ctgaagctca ataccacctt gccaatgaaa cgggtacggc
     1861 tttcatttcg gcagggcatc acgcgacgga acgttacggc gtacgcgcgc tggcagaatc
     1921 ggcggcagag gttttcgggt tggaagtgtg ccattttgac gaaaacaatc cggcttgagt
     1981 cttgagaaat atcataaaac tttaccttat tttaaataat gctttgagta tcactgcaaa
     2041 ctgggtaaaa ttgcaacgtt taatggctcg gtattcccaa aatattagga cgactgaata
     2101 atggataatc aagaaatcaa caacggccgc cgccgtttcc tgacactcgc gacctgcggc
     2161 gcgggcggag tggcagcatt gggtgtggca acgccgtttg tggccagttt tttcccttcg
     2221 gaaaaagcca aggccgccgg tgctgccgtc gaggtggatg tcagtaaaat cgaagcgggt
     2281 cagctgctga ccgccgagtg gcaaggcaaa ccgatttggg tgctcaaccg tacagatcag
     2341 cagcttaaag acctgaaagg cctgaacggc gaacttaccg atcccaattc cgatgcggaa
     2401 cagcagccgg agtatgctaa aaacgagacc cgttcgatta agccgaacat ccttgtcgcc
     2461 atcggtatct gcacccattt gggctgctcg cccaccttcc gtcccgacat tgcccccgcc
     2521 gatttgggtg cagactggaa aggcggcttc ttctgcccct gccacggttc gaaattcgac
     2581 ttggccggcc gcgtatataa aggtgttcct gccccgacca acctggttgt cccgccatat
     2641 aaatacttga gcgacacaac tatcttggtg ggcgaagact aagaataagg aacgataatt
     2701 atggcaaacc aaaccaatag caaagcaaaa gcattgttag gctggatgga cgctcgtttc
     2761 cccctgtcta aaatgtggaa tgagcatttg gctcaatact acgcaccgaa aaactttaat
     2821 ttttggtact acttcggctc tttggccctg cttgtcctcg tgattcaaat cgtcagcggc
     2881 attttcctga ccatgaacta caaacccgac ggcaacctga acgcctacca tctgcctgct
     2941 gcctttactg cagtcgagta catcatgcgc gacgtgtccg gcggttggat tatccgctac
     3001 atgcattcca ccggcgcatc tttcttcttc attgttgttt atctgcacat gttccgtggt
     3061 ttgatttacg gttcgtacaa aaaaccccgt gagttggtgt ggattttcgg ttctctgatt
     3121 ttcttggcat tgatggcgga agcctttatg ggctacctgc tgccttgggg tcagatgtcc
     3181 ttttgggggg cgcaggtaat tattaacctg ttctccgcca tccctgttat cggtccggat
     3241 ttgtccactt ggattcgcgg cgacttcaac gtttccgacg ttaccctgaa ccgtttcttt
     3301 gccctgcacg ttatcgcggt acctctggta ttgctcggct tggttgtggc gcacatcatc
     3361 gccctgcacg aagtgggttc taacaaccct gacggcgttg aaatcaagaa aaacaaagac
     3421 gaaaacggta tcccgcgcga cggtatccca ttccatcctt actataccgt taaagacatc
     3481 ttgggtgtgg ttgtattcct gattgtcttc tgtgccgtat tgttcttcgc accggaaggc
     3541 ggcggctact tcctcgaagc gccgaacttc gatgcggcaa atgcgctgaa aacacccccg
     3601 cacattgcgc cggtatggta tttcacaccg ttctacgcca ttttgcgtgc gattccctcg
     3661 ttcttgggaa cgcaggtttg gggtgtaatc ggtatgggcg cggcggtcgt gttgattgcc
     3721 ctgctgcctt ggctggatag gggcgaggtg aaatccgtcc gttaccgcgg cccgattttc
     3781 aaaaccgcat tggtcttgtt catcatttcc tttatcggtt tgggtatttt gggcgcgatg
     3841 gtggcaaccg atacgcgtac tttggtcgcg cgcatcctgt ccttcgtcta tttcgcattc
     3901 ttcctgggta tgccgttcta taccaagctg gataaaaaca aaccggttcc cgaacgcgta
     3961 accatgagca ccgccaaaca aaaaatcatg ttctttgttt acgtcggcat taccgccgtg
     4021 ggtgcttacc tgtttgcaac caacatctga tgagggcagt caaaatgaaa caagctatga
     4081 aaaattggtt tgctgccttg ctgttggcag tacccatggg tgcggcattt gcttcgggcg
     4141 gtcatgcaca ctatgagaaa gtcgatatcg atttgcgcga ccaagtcagc ctgcagcgcg
     4201 gcgcacaaat ctttaccaac tattgcctgt cctgccactc ggcaagcggt atgcgtttca
     4261 accgtttgaa agacatcggt ttgactgacg aagaaatcaa gaaaaacctg atgtttacca
     4321 ccgataatgt cggcgatgtc atgcattcgg cgatgaaccc gaaagatgcg gcaaaatggt
     4381 ttggtgctgc tccgcccgat ttgacattga ttgcgcgttc caaaggtgca gactaccttt
     4441 acgcttatat gcgcggcttc tataaagatc cgacccgtcc gagcggctgg aacaatactg
     4501 tattcgataa agtcggtatg ccccacccgt tgtgggaaca gcaaggcgtt caagccgttg
     4561 agttggatgc caaaggtcag ccggttatgg taaaagacga acacggcgag atgaagccta
     4621 agctgtattg ggaatctacc ggtttgcaca gccgccgtct gcctaacggc aaagtgatcc
     4681 aaaaagagta cgacgcatat gtacgcgatt tggtcaatta ccttgtgtac atgggcgaac
     4741 ctgcacaact gcaacgcaaa cgtataggct atgtcgtgat gattttccta tttgcggtta
     4801 tgctgccttt ggcgtatttc ctgaaaaaag aatattggaa agacgtacac taagcgtttg
     4861 gaacaaaagg gcaaatcctt tagggtttgc ccttttttca ttttgcctgc cgtttgaaaa
     4921 gcctgaatcc gtatgccgtc tgaacatagc tgcaacattt cagacggcat cattctaaaa
     4981 atgtcagaca tcgggaactt aatcagggtt tgtggcagat tgatattgaa ttaggaaaag
     5041 gtctgaaacc gcaagcagca tggtaaggcg atgtcgaaca ggtttaaagc caatccgcta
     5101 tattttttgg agctatgtcg aacaaacagg tagaatcgga ataagcggcg gttttgtccg
     5161 gtgtgaaaat gtttgaatat taggatgatt gatggaactg atgactgttt tgctgccttt
     5221 ggcggcgttg gtgtcgggcg tgttgtttac atggttgctg atgaagggca ggtttcaggg
     5281 cgagtttgcc gatttgaacg cgcaactggc ggaaaaggcg gcaagatgtg attttgtcga
     5341 acaggcacac gcagaaattg catcggaatt ggccgttttg gacgggaaat accgacattt
     5401 gcaggacgaa aattatgctt tgggcaaccg tttttccgca gccgaaaagc agattgccca
     5461 tttgcaggaa aaagaggcgg aatcggttcg gctgaagcag tcgtatatcg agttgcagga
     5521 aaaggcgcag ggtttggcgg ttgaaaacga acgtttggca acccagctcg gacaggagca
     5581 gaaggcgttt gccgatcaat atgccttgga acgccaaatc cgccaaagaa tcgaaaccga
     5641 tttggaagaa agccgccaaa ctgtccgcga cgtgcaaaac gacctttccg atgtcggcaa
     5701 ccgttttgcc gcagccgaaa aacagattgc ccatttgcag gaaaaagagg cggaagcgga
     5761 gcgtttgagg cagtcgcata tcgatttgca ggaaaaggca cagggtttgg cggttgaaaa
     5821 cgaacgtttg acaacgcaaa tcgaacagga acgccttgct tctgaagaga aactgtcctt
     5881 actgggcgag gcgcgcaaga gtttgagcga tcagtttcaa aatcttgcca acacgatttt
     5941 ggaagaaaaa agccgccgtt ttaccgagca gaaccgcgag cagcttcatc aggttttgaa
     6001 cccgttaaac gaacgcatcc acggtttcgg cgagttggtc aggcaaacct atgataaaga
     6061 atcgcgcgag cggctgactt tggaaaacga attgaaacgg cttcaagggt tgaacgcgca
     6121 gcttcacagc gaggcaaagg ctttaaccaa cgcgctgacc ggtacgcaga ataaggttca
     6181 gggaaattgg ggcgagatga ttctggaaac ggttttggaa aattccggcc ttcagaaagg
     6241 gcgcgaatat gtggtgcagg cggcggctgt ccgcaaagaa gaagacggcg gcacgcgccg
     6301 ccttcagccc gacgttttgg ttaacctgcc cgacaacaag cagattgtga ttgattccaa
     6361 ggtttcgctg acggcttatg tgcgctatac gcaagcggcg gatgcggata cggcggcgcg
     6421 cgaactggcg gcacacgttg ccagcatacg cgcgcatatg aaaggcttgt cgctgaagga
     6481 ttacaccgat ttggaaggtg tgaacacatt ggatttcgtc tttatgttta tccctgtcga
     6541 accggcctac ctgctggcgt tgcagaatga cgcgggattg ttccaagagt gtttcgacaa
     6601 acggattatg ctggtcggcc cgagtacctt gttggcaacc ttgcggacgg tggcgaatat
     6661 ttggcgcaac gaacagcaaa atcaaaacgc gctggcgatt gcggacgaag gcggcaagct
     6721 gtatgacaag tttgtcggtt tcgtacagac gctcgaaagc gtcggcaaag gcatcgatca
     6781 ggcgcaaaac agctttcaga cggcattcaa gcaacttgcc gaagggcgcg ggaatctggt
     6841 cggccgcgcc gagaaactgc gtctgttggg tgtgaaggca aacaagcagc ttgcacgcga
     6901 tttgaccgaa cgtgccaatg aaacaacggc gttgtcggaa tctttggaat atgcggcaga
     6961 agatgaagca gtctgacttg tgcggaaaaa tattgtttca gcaggggcgg gaatgccgaa
     7021 agcgcggcgt aactgtaccg gttctgattt ggggtttgtt tgaagtactt accaaagcct
     7081 tgtccggcga ggtacaccgg caaggcggcg gttgtctgag ccttttgcgt ttcagacggc
     7141 atcagtgcag atgacgccgt ctgaagaccg tagtgaagtc ggttagaaaa acggattgtg
     7201 ccgtttttcg tgtccgatgg aagtcatacg cccgtgtccg gcgacaactt gcacggtttc
     7261 ggggagggcg aataatttgt tgcggatatt attgattaag tcggcgtggt tgccgcgcgg
     7321 aaaatcggtt ctgcctatgg tttcgtaaaa cagcacgtcg cccgcaatca gcagctccgc
     7381 ttcggcacaa tagaaaacca cgtgtcccgg cgtgtgcccc ggaatatgca gcacttggaa
     7441 ggcgtagcgt ccgactttga gcgtttcgcc ttcttcgagc caatggttcg gcgcaaaggc
     7501 gggcgagacg gggaatccgt attgcgcggt ggtttgcggc agcgattgga gcaggaattc
     7561 atcgtccgga tgaggcccga ggacgggaac tttacgcgtt ttcagcattt cgaccacgcc
     7621 gcccgcgtga tcgagatggc cgtgcgtcag ccagattgcc gtgagcgtga gtttgcggtt
     7681 tgccaacgct tgcagcagga acggcacgtc gccgccgaca tcggtcagga cggcttcgcc
     7741 gctttcgtcg tcccaaatca gggtgcagtt ttggcggaag ggggtaacgg agaggatttc
     7801 gtaacgtagg gtcatggcgt gttcctaaac ggtttttcag acggcatcgg gtttgccgtt
     7861 tgttttatgg cggtttgccg cctgtttgga tattggggga atcgggtgat taagaagaca
     7921 atcggcggca tcataccgat ttttatggcg gttttcatcc ctgcatcggc aggcgcggcg
     7981 gatttgatgt tggcgcagga atacaaagac caagagattg caggctgggc aatgagcgag
     8041 aaactcgacg gcgtgcgcgc ctattgggac ggaaagcacc tgataagccg tcagggctat
     8101 gcgtttacgc cccccaaagg ctttaccgcg cagtttccgc cttatccttt ggacggcgaa
     8161 ttgtatagcg gacgcggtca gttcgagcag atttccgcta ccgtgcgttc tgtttcttca
     8221 gactggcgcg gcatccgtct gcacgttttc gacgtaccca aggcgcaggg caatctctac
     8281 caacgtttgg cagtcgcaac gcagtggctg aaaacgcatc cgaacgcgcc gattaccatc
     8341 atcccgcaaa tcaaagtgcg cgaccggcag cacgcgatgg actttttaaa acaaatcgaa
     8401 gcgcagggcg gcgaaggcgt gatgctgcgc cagcccgaat cccgttatag cggcggcagg
     8461 agcagccaat tattgaagct gaaaagccaa tacgacgacg aatgcacggt aacgcggcac
     8521 tatgagggca aagggcgaaa cgccggacgg ctgggcgcgg tcggctgcaa aaaccgacac
     8581 ggcgaattcc gcatcggcag cggtttcaaa gacaaagacc gcgacaaccc gcccaaaatc
     8641 ggcacactga ttacctaccg ctaccgtggt tttacgcgga aaggcacgcc gaaatttgcc
     8701 acatttgtgc gcgtgcgtac cgaccgctga gcaggacagt tcagacggca tccgatactt
     8761 tggtttataa ttttcctttt accgaccgat tccgacatat gaccgattta gaaaccaaac
     8821 gccttgaaac acaggcgatg cttgaaaacg ccgatctttt gttcgaccaa ggccaatgcc
     8881 gtgccgcact gcaaaaagtg gcggacgaga ttacgcgcga tttgggcggc aaatatccgc
     8941 tgctgctgcc cgtgatgggc ggcgcggtgg tgtttacggg gcagttgctg ccgctgttgc
     9001 gttttccctt agattttgat tatgttcacg tttcccgtta cggcgacaag ctggagggcg
     9061 gcgcgttcaa ctggaagcgt atgcccgatg cggaacaaat ccggggcagg cacgtcgtcg
     9121 tgctggacga tattttggac gaagggcata cgatgtccgc cattcaagcc aaacttttgg
     9181 aaatgggtgc ggcaagctgc cgtgcggcgg tgttcgccaa caagctgatc gacaaaccca
     9241 agcctatccg agccgattat gtcggactgg atgtgccgaa ccgttatgtt ttcggttacg
     9301 gcatggatgc ggcgggctgc tggcgcaatc tgggcgagat ttacgcattg gacggaaaat
     9361 aaggacgcga tgccgtctga atgcctttca gacggcatcg cgcccatacg ccggcaggat
     9421 aatgaagaac aggacgcatc aatatgatag ggcttttaat catcacacac gaaaccatag
     9481 gcgaagccta ccgcaagctg gcacatcatt ttttcccggg cgggctgcct gaaaacgtcc
     9541 gcatactcgg cgtgcagccg acggaagacc aagacgacat catcaacaac gccattgccg
     9601 cgcttcagga gtttcccgac aacgacggcg tgctgattat gaccgatatt ttcggcgcga
     9661 ccccctgcaa tgccgcccgc cgcctcgtgc gcgaaaacaa atcggcgatt ttgaccgggc
     9721 tgaacgcgcc gatgatggtt aaggccgtcc aatattcgcc ggcggcggaa gaccttgccg
     9781 cctttaccga atgcgtcagg gaggcggctg taaaaggcat tttcgccatc acgtccgcgc
     9841 ccgaagattt ggtgtgccgg cgcagcggcg atgccgtctg aagaagcggc agggcaggaa
     9901 aacattttaa acggcgtctg ctgccgatat acataacacg ggaatcgaaa tgctcaaaca
     9961 atccatcgaa atcatcaaca aactcggact tcacgcccgt gcctccagca aattcaccca
    10021 aaccgcgtct cagtttcaaa gcgaagtctg ggtaacgaaa aacggcagcc gcgtcaacgg
    10081 caaaagcatc atggggctga tgatgctcgc cgccgccaag ggtacggtca tcgagctgga
    10141 gacggacggc gcggacgagg cggaagcgat gcgcgccctg tccgacttaa tcaacgacta
    10201 cttcggcgag ggcgaataat gagtatcgtg ctgcacggcg tggcggcggg taaaggtatt
    10261 gccgtcggtt gcgcccacct gattgcgcgc ggtacggagg aagtgccgca gtatgatgtt
    10321 gcggaggcgg acaccgatgc cgaagccgaa cgtttcgatg ccgccgtcaa agccacgcgc
    10381 aaagagttgg aacagctccg cagcgcgatt cccgaaaacg ccccgaccga gttgggcgcg
    10441 ttcatctcgc tgcacctgat gctcttgacc gatgttacct tgtcgcgcga acccgtcgat
    10501 attttaaggg aacaaaaaat caacgccgag tgggcattga agcagcagag cgacaaactc
    10561 gccgcccaat tcgacaatat ggacgatgcc tatttgcgcg aacgcaagca ggatatgctg
    10621 caagtcgtcc gccgcatcca caacaacctg atcgggcagg gcaacgagtt ggaagttgcc
    10681 gacaacctgt ttgacgaaac cgttctgatt gcaaacgacc tttcgcccgc cgacacggtt
    10741 ttgtttaaag agcagcgcat tgccgccttc gttaccgatg ccggcggccc caccgggcat
    10801 acggcgattt tgggcaggag cttggacatc ccgtccgtcg tcgggctgca caacgcgcgc
    10861 aaactgatta ccgaaggcga aacggtcatt gtggacggta tcaacggcgt gttgattatc
    10921 gcgccggatg agtcggtgtt gaacgaatac cgccgccgtg cccgcgaata ccgcagccac
    10981 aaacgcgatt tgaacaagct caaaaaaacc gccgccgcca ccgccgacgg ggtctgcatc
    11041 gagcttgtgg gcaatataga atccgccgaa gacgtgaaac cgctgcacaa cctcggcgca
    11101 gacggcatcg ggctgttccg cagcgagttt ctttacctca accgcgatac gatgccgtct
    11161 gaagacgagc agtacgaagt gtacaacgcg attgtcaaaa aaatgaaagg caaaagcgta
    11221 acgatacgga cagtcgattt gggtgtggac aaaaacccgc gctggttcgg gaaaaacagc
    11281 acgcccaacg gcagcctcaa ccccgcgctg ggcatgaccg gcatccgcct gtgccttgcc
    11341 gaaccggtca tgttccgcac ccagatgcgc gccatcctcc gtgcggcggt acacggcccc
    11401 gtgcggatga tgtggccgat gattacctcc gtatccgaag tgcgccagtg cctcatccac
    11461 ctcgacaccg cgcaacgcca gcttgccgaa cgcggcgatg ccttcggtaa agtcggcatc
    11521 ggctgtatga ttgaaattcc gtctgccgcg ctgaccgtcg gcagtatttt gaaactggtc
    11581 gatttcatct ccgtcggtac caacgacctg attcaataca tcttgtccgt cgatcgcggc
    11641 gacgacagcg tcagccacct ctaccagccc ggccatcccg ccgtgctgaa aatgctgcaa
    11701 cacgtcatcc gtaccgccaa ccgcatggac aaagacgtat ccgtatgcgg cgagatggcg
    11761 ggcgataccg cgtttacccg cgttttattg ggtatggggc tgcgccgttt ttccatgaac
    11821 cccaacaaca tcctgcccgt caaaaacatc attctgcaca gcaatgtcgg acagctcgaa
    11881 agcgatattg cgaaagtcat ccgctgcgaa gacgaagaga agtcggaaaa gctgatcaaa
    11941 cagatgaaca gcgtgtctgt cgaggaagaa gccgacttca aggggcggaa ataaatacgg
    12001 caggtaaaaa atagaaatac ttaacaatgc ccgcaatctg aaattttgcc attcttgcaa
    12061 aatagaaaac cgaaacagaa acccaaaatc ggtcattccc tcaaaatcag aaacctaaaa
    12121 tccgtcattc ccgcgcaggc gggaatctag gtttgtcggc acagaaactt gtcgggaaaa
    12181 acggtttctt tagattttac gttctagatt cccgcttttg cgggaatgac ggcagggtgg
    12241 tttctgttgc tcccgataaa tgccgccatc tcaagtctcg tcattccctt aaaacagaaa
    12301 accgaaatca gaaacctaaa atccgtcat
//
LOCUS       DAXHNP010000047        12278 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.047, whole genome shotgun sequence.
ACCESSION   DAXHNP010000047 DAXHNP010000000
VERSION     DAXHNP010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12278
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.047"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            47..250
                     /locus_tag="ACFM5C_000950"
     CDS             47..250
                     /locus_tag="ACFM5C_000950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068682.1"
                     /translation="MKEMKPVRYHIGDMPETSKQTASRHDDRAVGVDDDCFHDSFGQF
                     LFGCSAEATRTAPISVKRSCLFT"
     gene            358..1392
                     /gene="lpxK"
                     /locus_tag="ACFM5C_000951"
     CDS             358..1392
                     /gene="lpxK"
                     /locus_tag="ACFM5C_000951"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFC6068683.1"
                     /translation="MPNCFKFHTVIERHWQKPYPVLSFLLKPLSGLFAKIAAKRRTDF
                     LSGKRQSEKLPVPVVVVGNIHAGGTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKA
                     VHVLNAESRAEDAGDEPLLLFRKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGLQ
                     HYALRRDVEIAVFPAADTGRTDLDLLPNGSLREPLLRLDSVDAVVVSGGKADALFRPS
                     ENMFHSRIEAGRIYRLNNPSEILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKR
                     TVALPDHADISAADLPDADAVIITEKDAVKFSDGICTDNVWVLPVCAIIEPDLAAFVL
                     ERLEDVPKAV"
     gene            1598..2179
                     /locus_tag="ACFM5C_000952"
     CDS             1598..2179
                     /locus_tag="ACFM5C_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HFC6068684.1"
                     /translation="MKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEK
                     NMIEGFNAGFKPYADKALAEMPEAKKDQAAKAFNRYRENVLKDLITPEVKQAVRNTLL
                     KNAREIYTQEEIDGMIAFYGSPAGQSVVAKNPRLIKKSMSEIAVSWTALSGKIARHHL
                     PEFTEELRRIICGGKNPDAGCKQAGQVGKRHQK"
     gene            2248..2430
                     /locus_tag="ACFM5C_000953"
     CDS             2248..2430
                     /locus_tag="ACFM5C_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HFC6068685.1"
                     /translation="MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPY
                     MLENEARALGEEELKV"
     gene            2427..3188
                     /gene="kdsB"
                     /locus_tag="ACFM5C_000954"
     CDS             2427..3188
                     /gene="kdsB"
                     /locus_tag="ACFM5C_000954"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6068686.1"
                     /translation="MTEFVVLIPARLDSSRLPGKALADIHGKPMVVRVAEQAAKSKAV
                     RVVVATDHPDIQTVCQAHGVEVVMTSNRHESGTTRLAEAAAALKLPQHLVVVNVQGDE
                     PLIAPELIDRTAEVLVENNVQMATAAHELHDFDELMNPNAVKVVLDKNRNAIYFSRAP
                     IPYLRDAMRAGKREMPFETAVLRHIGIYAYRVGFLQRYTEMSVSPLETIESLEQLRVL
                     WHGYPIAVETAKEAPAAGVDTQEDLDRIRAVFQTI"
     gene            3211..3528
                     /locus_tag="ACFM5C_000955"
                     /pseudo
     CDS             3211..3528
                     /locus_tag="ACFM5C_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            3630..3830
                     /locus_tag="ACFM5C_000956"
                     /pseudo
     CDS             3630..3830
                     /locus_tag="ACFM5C_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            3987..4079
                     /locus_tag="ACFM5C_000957"
     tRNA            3987..4079
                     /locus_tag="ACFM5C_000957"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4021..4023,aa:Ser,seq:gct)
     gene            4504..5289
                     /gene="trpA"
                     /locus_tag="ACFM5C_000958"
     CDS             4504..5289
                     /gene="trpA"
                     /locus_tag="ACFM5C_000958"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFC6068687.1"
                     /translation="MSRIRQAFAALDGGKALIPYITVGDPDIRTTLALMHGMVANGAD
                     ILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLN
                     PIHKMGYREFAQEAAKAGVDGVLTVDSPIETIDSLYRELKGNGVDCIFLIAPTTTEDR
                     IKTIAELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAESA
                     RKIGRVADAVIVGSRIVKEIENNTGNEAAAVGALVKELKDAVR"
     gene            5326..6198
                     /gene="accD"
                     /locus_tag="ACFM5C_000959"
     CDS             5326..6198
                     /gene="accD"
                     /locus_tag="ACFM5C_000959"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFC6068688.1"
                     /translation="MSWLDKILPPKIKNRSKDGSSNVPEGLWHKCPSCSATVYSTELQ
                     QNNQVCPKCNHHNPLSARQRLNLLLDEDGREEIAGNVKPTDLLKFKDSKKYPDRLSAA
                     RKLTGEDDALVVMKGKMNGLPVVVAAFEFRFIGGSMGSVVGERFVQGIRRAVADNCPF
                     VCVAASGGARMQEGVNSLMQMTKTSAALHLLTEKRLPFISVLTDPTMGGVSASFAFLG
                     DVVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRRDMKRRISD
                     LITLLCRQDKVSAA"
     gene            complement(6258..6869)
                     /locus_tag="ACFM5C_000960"
     CDS             complement(6258..6869)
                     /locus_tag="ACFM5C_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HFC6068689.1"
                     /translation="MRRTALLLLALTAGTSLAAGFNQKDTPINTRYRETPEEAAAREF
                     KEHTAKLPPLPDTHSDGWFDIYVDENYGKQPKILLDSLQIMPAPDGSIRYILNIRSDK
                     GYDNLTAEGIFCARFSIRFGNGKPSSYKVFGYGDTVNRRWIQPRNAEWKPIGGTLSRN
                     DALRTVLYQAFCEGGVPADTKGLVQRLKERAGRYAPSIKPHNK"
     gene            6978..7202
                     /locus_tag="ACFM5C_000961"
     CDS             6978..7202
                     /locus_tag="ACFM5C_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HFC6068690.1"
                     /translation="MNSETLDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPG
                     DFEAFCRQTGHVLLDASEQDGVFTLVVKHK"
     gene            7203..7349
                     /locus_tag="ACFM5C_000962"
     CDS             7203..7349
                     /locus_tag="ACFM5C_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068691.1"
                     /translation="MPSEMRMSRPTALFLNIVCAACRFKNKPSGVQCRHFGRIAADLF
                     RNGC"
     gene            7565..8599
                     /gene="pyrC"
                     /locus_tag="ACFM5C_000963"
     CDS             7565..8599
                     /gene="pyrC"
                     /locus_tag="ACFM5C_000963"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFC6068692.1"
                     /translation="MQTLTIIRPDDMHLHLRDGDALKAVAPYTARQMGRAVIMPNLKP
                     PVVSVADALAYKARIMAVLPEGSAFEPLMTLYLTDQATPELVREAKAAGIVAFKLYPA
                     GATTNSDSGVTDLFKLIPVLEEMAKQDILFLVHGEVTDPEIDIFDREAAFIERVMKPV
                     LAQVPNLKVVFEHITTAEAARLVLEAGDNVAASVTPQHLLLNRNDLLVGGVRPHHFCL
                     PVLKRETHRQALVAAVTGEKAHKFFLGTDSAPHAKSAKENACGCAGMFSAMTAIELYA
                     EVFEKAGALDKLEAFASKNGARFYGIPENAGTITLVKQSQTVPASVPYGDGELVPMRA
                     GGEIGWTVQY"
     gene            complement(8966..9391)
                     /gene="nusB"
                     /locus_tag="ACFM5C_000964"
     CDS             complement(8966..9391)
                     /gene="nusB"
                     /locus_tag="ACFM5C_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFC6068693.1"
                     /translation="MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADE
                     ELFNKLFFGTQTNAAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAIPETPYPVI
                     INEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR"
     gene            complement(9469..9945)
                     /gene="ribH"
                     /locus_tag="ACFM5C_000965"
     CDS             complement(9469..9945)
                     /gene="ribH"
                     /locus_tag="ACFM5C_000965"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFC6068694.1"
                     /translation="MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVA
                     DENITVATVPGALEIPIALMNLASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSR
                     VALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE"
     gene            complement(9993..10316)
                     /locus_tag="ACFM5C_000966"
     CDS             complement(9993..10316)
                     /locus_tag="ACFM5C_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2185 domain-containing protein"
                     /protein_id="HFC6068695.1"
                     /translation="MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGW
                     RFFSGDETDEYTDDPDNFSIVSLADIAKTNPETAALLSQPEGSAWELAEDGTFQTVAD
                     WQPQD"
     gene            10483..11202
                     /gene="rnc"
                     /locus_tag="ACFM5C_000967"
     CDS             10483..11202
                     /gene="rnc"
                     /locus_tag="ACFM5C_000967"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFC6068696.1"
                     /translation="MKDDVLKQQAHAAIQKRLGYAFRDISLLRQALTHRSHHAKHNER
                     FEFVGDSILNYTVARMLFDTFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLG
                     AGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFADRVRCADFQNQAKD
                     GKTALQEALQARRFALPKYRIEEQIGHANDSMFVVSCDLGELGFVCRAKGTSRKAAEQ
                     EAAKEALKWLEEKLPLKKKKK"
     gene            11249..12172
                     /gene="era"
                     /locus_tag="ACFM5C_000968"
     CDS             11249..12172
                     /gene="era"
                     /locus_tag="ACFM5C_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFC6068697.1"
                     /translation="MDIETFLAGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKIS
                     ITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVV
                     VFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFA
                     AAEAVSAKHGLRIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLG
                     EELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDME
                     KLFDTKVFLKVWVKVKSGWADDIRFLRELGL"
BASE COUNT         2829 a         2937 c         3561 g         2951 t
ORIGIN      
        1 ccgtactggt ttttgttaat ccactataaa tgaaagatac tggaaaatga aagagatgaa
       61 acctgtccgt tatcatattg gcgatatgcc cgagacttca aaacaaaccg cctcccgtca
      121 tgacgacagg gcagtgggtg ttgacgatga ttgttttcat gattcctttg gtcaattttt
      181 gtttgggtgt tcggcagagg caacccgaac cgcgccaatt tctgtaaagc gcagttgctt
      241 atttacctga ttggttcgct tatcggtttg gtcttcgcgt tgtttatagg tgggtctgta
      301 tcgggtacgc atgattaatg ccccgggctg attttgcttc gaggatttgt atcgaatatg
      361 ccgaattgtt tcaaatttca taccgttatc gaacggcatt ggcaaaaacc ttatccggtt
      421 ttgtcttttc tgcttaagcc gctctccggg ctgtttgcca aaattgcggc aaaacggcgg
      481 acggattttt tatcgggaaa acggcaaagc gaaaagctgc ccgtgcctgt ggtcgtggtc
      541 ggcaatattc acgcgggtgg gacggggaaa acgccgattg ttgccgcgct ggtgtcgggt
      601 ttgcaggaaa agggcgtcaa ggtcggcatc atcagccggg gctacgggcg caagagcaag
      661 gcggttcatg tattgaatgc tgagagccga gcggaagatg cgggcgatga gcctttgctg
      721 ctgttccgca aaaccggtgc gccgacggcg gtgggcagca gccgtgcaga ggcaggcagg
      781 gcgttgctgg cggcgcatcc cgacatcgga ctgattgtgg cggacgacgg tttgcagcat
      841 tacgccctgc ggcgagatgt ggaaatcgcg gtgtttccgg cggcggatac ggggcgcacg
      901 gatttggatt tactgcccaa cggcagtttg cgcgaacctt tgttgcggct ggattcggtg
      961 gatgcggtcg tcgtcagcgg cggcaaggcg gatgcgctgt ttaggccgtc tgaaaatatg
     1021 tttcacagcc gtatcgaagc gggacggatt taccgtttga acaatccgtc cgaaatactg
     1081 gacacaggcc gtctgaaaaa tcaaaccgtc gtcgccgtgg caggtattgc caagccggcg
     1141 cgttttttcg attcgttgcg gaatatgggc attaccgtga agcgaaccgt cgcgctgccc
     1201 gaccacgccg acatttcggc ggcagatttg cccgatgcgg acgcggtcat tattacggag
     1261 aaagatgcgg tcaaattttc agacggcatt tgcaccgata atgtttgggt gttgcccgtt
     1321 tgtgcgataa tcgaacctga tttggcggcg tttgtgttgg agcggttgga agatgtaccg
     1381 aaggccgtct gaaagcacgg tttgggcgga gtgattacgg atttgaataa gaacgcctcg
     1441 cgccgtcatt cccgcgcagg cgggaatcta agtctcgaat tttcaggaat gcctaggagg
     1501 cttcagaaat cccaaatctc cggatttcca cttggacagg aatgagaaaa tcggtcgtat
     1561 tttttatctg cattaatcat tcgttaaagt attgaatatt aaactgaaaa ccttgttatt
     1621 gcccttcgcc acgctggcat tgtgcaccaa cgcttttgcc gccccgccca gcgacgcgtc
     1681 gttggcgcgt tggctggata cgcagaattt tgaccgggat atagaaaaaa atatgattga
     1741 gggctttaat gccggattta aaccgtatgc ggacaaagcc cttgccgaaa tgccggaagc
     1801 gaaaaaagat caggcggcaa aagcctttaa ccgctatcgt gagaatgttt tgaaagattt
     1861 gattacgccc gaagtgaaac aggctgtccg caatacttta ttgaagaatg cccgtgagat
     1921 atacacgcaa gaagaaattg acggcatgat tgccttttac ggttcgcccg ccggtcagtc
     1981 cgtcgttgcc aaaaatccgc gcttaatcaa gaaatcgatg agtgaaatag cggtatcttg
     2041 gactgcattg tcagggaaaa tcgcgcgaca tcatctgccc gagtttacgg aagagttgcg
     2101 acgcatcatc tgcggcggta aaaatcccga tgcgggctgt aaacaagccg gacaggttgg
     2161 gaaaaggcat cagaaataaa tgatagccgt ctgaaatatt gcagagggca tccgattgat
     2221 taaaccatca aacccgaaag caaccttatg gaaaaaaaat tcttagacat cctcgtctgc
     2281 cccgttacca aaggcaggct ggaatatcat caggacaaac aggaattgtg gagccgtcag
     2341 gcgaagctgg cgtatccgat taaagacggc atcccctata tgctggaaaa cgaagcgcga
     2401 gcgttgggcg aagaggagct caaagtatga ccgaattcgt cgtattgatt ccggcgcggc
     2461 tggattcgtc gcgcctgccc ggaaaagcct tggcggacat ccacggcaaa ccgatggtcg
     2521 tgcgcgttgc cgaacaggcg gcaaaaagta aagctgtgcg cgtcgtcgtt gccaccgacc
     2581 atcccgatat tcagacggtc tgtcaggcgc acggcgtcga agtcgtcatg acttcaaacc
     2641 ggcacgaaag cggcacgacg cgccttgctg aagctgccgc cgcgctgaag ctgccgcaac
     2701 atctggtcgt tgtcaacgta cagggcgacg agccgctgat tgcccccgaa ctcatcgacc
     2761 gcaccgccga agtactcgtc gaaaacaacg tccaaatggc gaccgccgcc cacgaattgc
     2821 acgatttcga cgaattgatg aatcccaatg ccgtcaaagt cgtcctcgac aaaaaccgca
     2881 acgccatcta cttcagccgc gccccgattc cctatctgcg cgatgcaatg cgtgccggaa
     2941 aacgcgaaat gccgtttgaa accgccgtcc tgcgccatat cggcatctac gcctaccgcg
     3001 tcggcttcct gcaacgctac accgaaatga gcgtttcgcc gctggaaacc attgaatcgc
     3061 tggagcaact gcgcgtcctg tggcacggct acccgattgc cgtcgaaacc gccaaagaag
     3121 ctcctgccgc cggcgtagat acgcaggagg atttggacag gattcgcgct gtatttcaga
     3181 ctatataaaa tagattcaaa gggaaaagat atgcagcaac atattgaaaa atggcaacac
     3241 ttgagccggg aagaacagaa aatccttgct gaagtatggg gtctcgtgca aaacgatgat
     3301 caggaggttc actatgaaat gctcaaattg aacgcacccg acgaagccag tggcgaattt
     3361 tggttcagaa tggcagaaac actcagcacc ctgccgccca accgttccct cgaccttaga
     3421 atgaacggcg gcaggctggc gaccgccgta tccatccttt ccgtcatgat tgaagacaat
     3481 cccgacatac cgcagctttg ggcgcaaaaa attaccgcgc tcaattatag tggattaaat
     3541 ttaaaccagt acggcgttgc ctcgccttgt cgtactatct gtactgtctg cggcttcgtc
     3601 gccttgtcct gatttttgtt aatccactat atttggcaca cggacacaaa gcccgtgccg
     3661 acggtttggc acaacagccc gacaaagcgg cagaagccaa cgaggaggaa tacctgacca
     3721 aagccctgtc gcaaaacctg ctgtcaacat tggatgccgc gcttgcacgt tttcctgaag
     3781 acgcgtggtt tcaggaaatc aaacaggatg cacaaaagca ttttgcttga ggatgtggca
     3841 gtcaggaata tttccattca ggaagaaaag aagtgcctga ttgggtataa tcagggtaaa
     3901 tcttatttta tttcaaaaga ttaatatttg ctttctgttt ttccttgacg gtatcggaaa
     3961 agttgattat agttacagct tccttaggag taatggctga gaggctgaag gcacttccct
     4021 gctaaggaag catgtggggt caacctgcat cgagggttcg aatccctctt actccgccag
     4081 ataaaaaata gacgctgtgt tttacagcgt ctatttttta tgcaatttta tagcgggttg
     4141 gtgcaaaacc agtatggtat tgccctgtct tgattctgaa ttttgttata gtggattaac
     4201 aaaaaccagt acggcgttgc ctcgccttag ctcaaagaga acgattctct aaggtgctgg
     4261 agcaccaagt gaatcggctc cgtactattt gtactgtctg cggcttcgtc gccttgtcct
     4321 gatttttgtt aatccactat aatccgagat gcttgccgtt tatttccgcc tcgttcaaac
     4381 ggcggctctg atttgcgcgg tttctgtttg ccgtattcgc ctatccgtac cgcaaatgtt
     4441 atactgggaa aaatttactg attgtgtttt acggcatatt tgccgatagg atggaagaga
     4501 caaatgagca gaatccggca ggcttttgcc gctttggatg gcggaaaggc attgattccc
     4561 tatattacgg tgggcgaccc cgatattcgg acaactttgg cattgatgca cggcatggtt
     4621 gcaaacggtg cggatatttt ggagttgggt gtgccgtttt ccgatccgat ggcggatggg
     4681 ccggttattc agcgtgcggc ggagcgggcg ttggcaaacg ggatttcgct gcgcgatgtc
     4741 ttggatgtcg tcagaaaatt ccgtgaaacc gacacgcaaa cgccggttgt tttgatgggg
     4801 tatttgaatc ccatacataa gatgggttat cgggagtttg ctcaggaagc cgcaaaggcg
     4861 ggggtggatg gtgtgttgac agtggattcc cccattgaaa ccatcgattc tttatatcgc
     4921 gagctgaaag gcaacggggt tgactgtatt ttcctgattg caccgacgac gacggaagac
     4981 cgtattaaaa ccattgccga gctggcaggc ggatttgtct attatgtttc gctcaagggc
     5041 gtaacgggcg cggcaagttt ggatacggat gaggtttcgc gtaaaataga gtatttgcat
     5101 cagtatatcg atattcccat cggtgtcggt ttcggcatca gcaatgcgga aagtgcacgc
     5161 aaaatcggcc gggttgccga cgcagttatt gtcggcagcc ggattgtgaa agaaatcgaa
     5221 aacaatacag gcaacgaggc tgccgccgtc ggtgctttgg taaaagagtt gaaggatgcc
     5281 gtgcgctgat tctgtcacgc attctaaata ttttaggagt tgtccatgag ctggttagat
     5341 aaaatcctgc cacccaaaat caaaaaccgc agcaaagacg gttcttccaa tgttcccgag
     5401 ggtttgtggc acaaatgtcc gtcttgttcg gcaaccgttt attcgaccga gttgcagcag
     5461 aacaatcagg tttgtccgaa atgcaaccac cacaatccgt tgtcggcacg acaacgcctg
     5521 aatctgcttt tggatgagga tggtagagag gagattgccg gaaatgtcaa accgaccgat
     5581 cttttgaagt ttaaagacag caaaaaatat ccggatcgtt tgagtgcggc acgcaagctg
     5641 accggggaag atgatgcttt ggtggtaatg aaaggcaaga tgaacggtct gcccgtcgtc
     5701 gttgccgcgt ttgaattccg ctttatcggc ggttcgatgg gttcggttgt gggcgaacga
     5761 ttcgtacaag gtatccgtcg ggcggttgcc gacaattgtc cgttcgtctg tgtggcggct
     5821 tccggcggtg cgcgtatgca ggagggtgtg aactcattga tgcagatgac gaaaaccagt
     5881 gccgcgctgc atttgctgac ggaaaaacgc ctgccattta tatcggtgtt gaccgatccg
     5941 actatgggcg gcgtatccgc cagcttcgca tttttgggcg atgtcgtgct tgccgaaccg
     6001 aacgcgctga tcggttttgc cggtccgcgc gtgattgagc agacggtgcg cgaaacgctg
     6061 ccggaaggct tccaacgcgc cgagttcctg ctggaaaaag gcgcaatcga ccagattgtc
     6121 gaccgccgcg atatgaagcg gcgcatcagt gatttgatta cgctgttgtg ccgtcaggac
     6181 aaagtttccg ccgcttgatg gctgatgaat cgaataccgt ctgaaaccga tgtttcagac
     6241 ggtatttttg tgtctggtta tttgttgtgc ggctttatcg acggggcata gcgtccggca
     6301 cgttctttca ggcgttgtac caaacctttc gtgtcggcgg gtacaccgcc ctcgcagaat
     6361 gcctgataca ggacggtgcg cagtgcgtcg ttgcggctta atgtaccgcc tatcggtttc
     6421 cattcggcgt ttcggggctg tatccagcgg cggttgaccg tgtcgccgta gccgaacact
     6481 ttataggagg aaggtttgcc gttgccgaac ctgatggaga agcgggcgca gaatatgcct
     6541 tcggcagtca ggttgtcgta gcctttgtcg gagcggatat tgagaatgta gcggatgctg
     6601 ccgtcgggcg cgggcataat ttgcaggctg tcgagcagga ttttgggttg tttgccgtaa
     6661 ttttcatcca cataaatgtc aaaccagccg tccgagtgcg tatcgggcag cggcggcagt
     6721 ttggcggtat gttctttaaa ttcgcgggcg gcggcttctt cgggcgtttc gcggtagcgg
     6781 gtgttgatcg gcgtgtcttt ttggttgaag ccggcagcaa gggacgtgcc ggcggtgagt
     6841 gcgagcagca ggagggcggt gcggcgcata agtttctcca aattgaaaac ggcgttattt
     6901 tatgggttgg caaagggggc tgcaagcaac tggggtataa tctccccccg attcccattt
     6961 tttaaacggt acaaacgatg aacagcgaaa ctttagacgt aaccgggctg aaatgccctt
     7021 tgccgatttt gcgggcgaaa aaggctttgg cgcaaatgca gcagggcgac gtgttgaccg
     7081 ttctggcaac cgacggcggc gcaccggggg attttgaggc tttttgccgc caaaccggtc
     7141 atgtgctgtt ggatgcttcc gaacaggacg gcgtgttcac gctggtcgtc aagcacaaat
     7201 aaatgccgtc tgaaatgcgg atgtcccgcc cgacggcgtt gtttttgaat atcgtatgtg
     7261 ccgcgtgccg tttcaaaaac aaaccgtccg gcgtgcagtg tcggcatttc gggcgtatcg
     7321 ccgccgattt gttccggaat ggctgttaac cgccttgccg tcggcaaaga agcaaaaccc
     7381 aagcacaatc aaaatctaaa ggctgtgttt gaagattccg ttgatgcaac ccaatcagtc
     7441 ggacaaaatg cctttcatcc aatggaaccg gtttccgacc ggacggaata accggctttc
     7501 ccccggcaaa cggatggaat cgaccgggta ttcaaacgca gccaaaacct aaaaaggaac
     7561 aaccatgcaa accctgacca ttatccgccc cgacgatatg cacctgcacc tgcgcgacgg
     7621 cgacgcgctc aaagccgttg ccccttatac cgcccgccaa atggggcgcg ccgtcattat
     7681 gcccaacctc aaaccgcccg tcgtcagtgt agccgacgcg cttgcctaca aagcgcgcat
     7741 tatggcggtg ttgcccgaag gcagcgcgtt tgagccgctg atgacgcttt acctgaccga
     7801 ccaagccacg cccgagctgg tgcgcgaagc caaagccgcc ggcatcgtcg ccttcaaact
     7861 ctaccccgcc ggcgcgacga ccaattccga ttccggcgta accgacctat tcaagctcat
     7921 ccccgtgttg gaagaaatgg caaaacagga catcctgttc ctcgttcacg gcgaagtaac
     7981 cgaccccgaa atcgacattt tcgaccgcga agccgccttt atcgagcgcg tgatgaaacc
     8041 cgttttggcg caagtgccga atcttaaagt cgtgtttgaa cacattacca ccgccgaagc
     8101 cgcccgcctg gttttggaag caggcgacaa cgttgccgcc tctgtgaccc cgcaacacct
     8161 cctgctcaac cgcaacgacc tcttggtcgg cggcgtgcgc ccccatcatt tctgcctgcc
     8221 cgtcctcaag cgcgaaaccc accgtcaggc attggttgcc gccgttaccg gcgagaaggc
     8281 gcacaaattc ttcctcggca cagattccgc gccgcacgcc aaatccgcta aagaaaacgc
     8341 ctgcggttgc gccggtatgt tcagcgcgat gaccgccatc gagctttacg ccgaagtgtt
     8401 tgaaaaagca ggcgcgttgg acaaactcga agcctttgcc tcgaaaaacg gcgcaaggtt
     8461 ttacggcatt ccggaaaacg ccggcacgat caccctcgtc aaacaaagcc aaaccgtccc
     8521 cgcaagtgtt ccctacggcg acggcgaact tgtcccgatg cgcgcgggcg gcgaaatcgg
     8581 ctggacggta cagtattgat tgaacggtca agcaaaatgc cgtctgaaag gtttttcaga
     8641 cggcatttgt gttgttgact gattgatacg tcaacggcgt ttgagtttgt tacgtttcgg
     8701 ttatttccga taaattccca caattttcaa atttcgccat tcccacgaag gcaggaatcc
     8761 ggaaattcga tgcgaccaga gtttatcaaa aacggcagca actcaaaaaa ccggattccc
     8821 gcctgcgcgg gaatgacgag attgaagttt cagaatttat ttgaaatacc caaaattcaa
     8881 aaaaccaaat tcccacatgc gtgggaatga cgaaacaaag aaagcagaaa taaggacata
     8941 gaactttctt taaatttgtg atgcatcaac ggcgtttggg ctcgtcgggg cggatttggg
     9001 cagcgagttt gtcgaggatg ccgttgacga atttgtgccc gtccgtaccg ccgaaggttt
     9061 tggtaacttc gatggcttcg ttgataatga cggggtaggg cgtttcgggt atggcggaca
     9121 gctcgtggca ggcggtcagc aggacggcgc gttcgatggg gttgaggtct ttttcgtccc
     9181 tgtcgagcag cgggcggatt tgccggatgt attctgccgc attggtttgc gtgccgaaga
     9241 aaagtttgtt gaacaattct tcgtctgcct tggcaaagtc ggacatttcg cggatgtttt
     9301 tagcaatctc gggtgctgcg gtgcggttga taagggattg gtaaacggct tgtacggcaa
     9361 gctcgcggga acggcggcgg gctgttttca tgatttttcc ttgaaacggt tgggcggcac
     9421 ggtatgccgt ctgaaacgga aagggcgtat tggtgtacgc cctgtttgtt attcttcgtc
     9481 ttcaaactgt tcttcgagca gcaggttgac gaggttggcg cattctacgg cgactttggc
     9541 ggcatccgag gctttttctt caatccgttc gattgcctgc gcgtcgtttt cggtggttag
     9601 gacggcattg gcaatcggga tgttgtagtc gagtgcgacg cggctaaccc ctgctccgga
     9661 ttcgttggaa accagctcga aatggtaggt ttcgccacgg atgacgacac cgatggcaat
     9721 cagtgcgtca aacttttcgg aagaggcaag gttcatcagt gcgatgggga tttcaagtgc
     9781 gccgggtacg gtggcgacgg taatgttttc gtctgccacg cccaattctt ggagggtgcg
     9841 gcagcagact ttgagcattt cgctgccgat ttcgttggtg aaacgtgcct gtacgatgcc
     9901 gatgcggagg tgtttgccgt cgaggttggg ggcgatggtg ttcattgggt gtcctttggt
     9961 attcggaggt ttcggaatgc cgtctgaagg tttcagtctt gcggctgcca gtcggcgacg
    10021 gtttggaatg tgccgtcttc ggcaagctcc catgcgctgc cttcgggttg ggaaagcagt
    10081 gcggcggttt cagggttggt tttggcgatg tcggcgaggc tgacgatgct gaagttgtcg
    10141 ggatcgtcgg tgtattcgtc ggtctcgtcg ccgctgaaga aacgccagcc gctgtcgttt
    10201 tcaaaaacgg gggcttcgcg gtagaggaag ccgacgggcc ggttttgttt ggcgacggtg
    10261 ttggtggcga tacagcggtc gagtgccgag gaaagtgctt gtgcaaatgc gttcattacg
    10321 ggaatacgtt gggggaaaac ttacggattt taccacgatt cgtgcgttgt cggcagacgg
    10381 cggcggtttg gtggtacaat gtgcgccgtt tgcagcctta aggtgtttct gtatttttgg
    10441 agtatggaaa cgcattcggg ctgttttttg cggaagacgg taatgaaaga cgatgttttg
    10501 aaacagcagg cacacgcggc gatacagaag agactgggct acgcgttccg cgatatttcg
    10561 cttttgcggc aggctttgac gcacaggagc catcatgcga agcacaacga gcggttcgag
    10621 tttgtcggtg attcgatttt gaattatacg gtggcgcgga tgctgtttga cacgtttccg
    10681 aagttgaccg agggcgagtt gtcgcggttg cgggcaagtc tggtcaatga gggcgtgctg
    10741 gcggaaatgg cggcggaaat gaatgtcggc gacggtctgt acttgggggc gggcgagttg
    10801 aagagcggcg gcttcagacg gccttcgata ctggcggacg cgatggaggc gatgtttgcg
    10861 gcggtcagct tcgatgccga tttcaacacg gcggaaaagg tggtgcgcca tttgtttgcc
    10921 gaccgcgtcc ggtgtgccga tttccaaaat caggcaaaag acggcaaaac tgctttgcag
    10981 gaggcgttgc aggcacgccg ctttgctttg ccgaaatacc gtatcgaaga gcaaatcggc
    11041 catgccaacg acagtatgtt tgtggtttcc tgcgatttgg gcgaactggg tttcgtgtgc
    11101 cgtgccaaag ggacgagccg caaggcggcg gaacaggagg cggcgaaaga ggctttgaaa
    11161 tggctggaag agaagctgcc gctgaagaag aaaaagaaat gaggcggcgc gtgaatatgc
    11221 cgtctgaaat gtggatatga aagcgaatat ggatattgaa accttccttg caggggaacg
    11281 cgccgccggc ggataccgtt gcggcttcgt ggcgattgtc ggtcgtccga acgtgggcaa
    11341 atcaacgctg atgaaccatc tcatcggtca gaaaatcagc atcaccagca aaaaggcgca
    11401 gacgacgcgc aaccgcgtaa cggggattta taccgacgat accgcgcagt tcgtgtttgt
    11461 cgatacgccc ggctttcaaa ccgaccaccg caacgcgctc aacgacaggc tgaatcaaaa
    11521 cgttaccgag gcgcttggcg gcgtggatgt ggtggttttc gtcgtggaag cgatgcgctt
    11581 taccgatgcc gaccgtgtcg tgttgaaaca actgcccaag cacacgccgg tcattttagt
    11641 ggtcaacaaa atcgacaagg acaaggcgaa agaccgttac gcgctggagg cgtttgttgc
    11701 ccaagtgcgc gccgaatttg aatttgcggc ggcggaggcg gtcagtgcga aacacggatt
    11761 gcggattgcc aacctgttgg agctgctcaa gccgtatctg cccgaaagcg tgccgatgta
    11821 tcccgaagat atggttacgg acaaatcggc gcgtttttta gcgatggaaa tcgtgcgtga
    11881 aaaattgttc cgctatttgg gcgaggaatt gccttatgcg atgaacgtcg aagtggagca
    11941 gtttgaagag gaagacggtt tgaaccgcat ctatatcgcc gttttggtcg ataaggaaag
    12001 ccaaaaggcg attttaatcg gcaaaggcgg ggagcgtttg aagaaaattt ccaccgaagc
    12061 gcggttggat atggaaaaac tgtttgatac caaagtattt ttgaaggtct gggtcaaagt
    12121 caaatccggt tgggcggacg acatccgctt cctgcgcgag ctgggtttgt agtttttctt
    12181 gctgaacttt acgcaaatgc cgtccgaaca ggtttcagac ggcattttgt ttcaatcggg
    12241 aatatctttg ttaaaaacgg gttgatatta tctgtgca
//
LOCUS       DAXHNP010000048        12235 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.048, whole genome shotgun sequence.
ACCESSION   DAXHNP010000048 DAXHNP010000000
VERSION     DAXHNP010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12235
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.048"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            246..983
                     /locus_tag="ACFM5C_000969"
     CDS             246..983
                     /locus_tag="ACFM5C_000969"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFC6068698.1"
                     /translation="MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAG
                     KSTLLRLINLLERPDTGKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLNNRTVAG
                     NVAFPLEIAGWPSEKIKARVAECLEIVGLTERAGHYPAQLSGGQKQRVGIARALAPKP
                     QVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKG
                     KVVEIVEVRGNQIHARSDIGCELIRED"
     gene            986..1672
                     /locus_tag="ACFM5C_000970"
     CDS             986..1672
                     /locus_tag="ACFM5C_000970"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFC6068699.1"
                     /translation="MAGLTFEQTVSNIIGMKGEIVRALGETFVMVGLSTTFAVVFGTL
                     LGVLLFVTSSRQLHYNKPVNFLLDNLVNLMRAFPFVILMIAMIPATRAIVGSTIGPVA
                     ASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAAMGAPPVAIVRKVLLNEARAGMVSS
                     ITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQTEVIVFIVALLVLLVILIQSTG
                     NALARKLDKR"
     gene            1831..2694
                     /locus_tag="ACFM5C_000971"
     CDS             1831..2694
                     /locus_tag="ACFM5C_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6068700.1"
                     /translation="MKTFFKTLSAAALALILAACGGQKDSAPAASASAAADNGAEKKE
                     IVFGTTVGDFGDMVKEHIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKP
                     YLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM
                     LDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAI
                     SSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYK
                     SPAAWNEGAAK"
     gene            complement(2756..3325)
                     /locus_tag="ACFM5C_000972"
     CDS             complement(2756..3325)
                     /locus_tag="ACFM5C_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFC6068701.1"
                     /translation="MVRRLIIGISGASGFQYGVKALELLRAQDIETHLVVSKGAEMAR
                     ASETAYARDEVYALADFVHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDN
                     LLTRAADVVLKERRRLVLMVRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTAD
                     DIVAHSVAHALSLFGIDTPDSAEWQGMAD"
     gene            3483..4343
                     /locus_tag="ACFM5C_000973"
     CDS             3483..4343
                     /locus_tag="ACFM5C_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFC6068702.1"
                     /translation="MAKVKGGLGRGLDSLLANGADNSSGDRLTTVAVKDIRPGRYQAR
                     VQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGERRWRAAQIAGLTEIPAVI
                     KTISDETALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISN
                     SLRLLSLPEPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQ
                     AALQNKRPEPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGRIILHFDTPETFDHI
                     LKQLGIDYRP"
     gene            4479..4817
                     /locus_tag="ACFM5C_000974"
     CDS             4479..4817
                     /locus_tag="ACFM5C_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068703.1"
                     /translation="MNTRIIVSAAFVALALAGCGSINNVTVSDQKLQERAAFALGVSP
                     NAVKISNRSNEGIRINFTATVGKRVSQCYVTSVISTIGVTTSDAICLGGGTHKGKSQC
                     NALLKAAGRC"
     gene            5185..5538
                     /locus_tag="ACFM5C_000975"
     CDS             5185..5538
                     /locus_tag="ACFM5C_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HFC6068704.1"
                     /translation="MKQIIILQSAVLSICAAVAFAVWGFAGFLSAVGGGLSYLLPTFV
                     AVLLLKLFRGNPFLQSRMFVFGEILKVVLSLLSMLAVFAVWHQSLVFAPFLMGLLGVS
                     HLVFLVLLRVKDYGR"
     gene            5528..6394
                     /gene="atpB"
                     /locus_tag="ACFM5C_000976"
     CDS             5528..6394
                     /gene="atpB"
                     /locus_tag="ACFM5C_000976"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFC6068705.1"
                     /translation="MAGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDA
                     VFFAVLLGVIGSFLLWRGAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAV
                     APLGLTLFVWIFLMNAMDMLPVDLLPMVWQGITGNHHALLRVVPTADLNTTLALAVGV
                     LLICIYYNIKIKGLGGWFHELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMY
                     AGELVFLLIALLGGAWAASGSVEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMAL
                     AFVYIGQAHDAH"
     gene            6451..6687
                     /gene="atpE"
                     /locus_tag="ACFM5C_000977"
     CDS             6451..6687
                     /gene="atpE"
                     /locus_tag="ACFM5C_000977"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFC6068706.1"
                     /translation="MGLIAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPL
                     QTKLFLIAGLIDAAFLIGVAIALLFAFVNPFAGA"
     gene            6758..7228
                     /locus_tag="ACFM5C_000978"
     CDS             6758..7228
                     /locus_tag="ACFM5C_000978"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFC6068707.1"
                     /translation="MNINATLFAQIIVFFGLVWFTMKFVWPPIAKALDERAAKVAEGL
                     AAAERGKSDFEQAEKKVAELLAEGRNQVSEMVANAEKRAAKIVEEAKEQASSEAARIA
                     AQAKADVEQELFRARESLREQVAVLAVKGAESILRSEVDASKHAKLLDTLKQEL"
     gene            7233..7766
                     /locus_tag="ACFM5C_000979"
     CDS             7233..7766
                     /locus_tag="ACFM5C_000979"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFC6068708.1"
                     /translation="MAEFATIARPYAKALFGLAQEKNQIESWLGGLEKLAAVVQEGKV
                     ASLIDRPETNASEKADILIDLVGLKDKELKNFVIVLAGQKRLSILPEVYAQYQDLTLS
                     FNHIKSAIIYSAYPLTDKQVGELAQMLNKRFDSELKISVEIEPELIGGIKVEVGDQVL
                     DLSVQGKLSALYTTMTN"
     gene            7777..9324
                     /gene="atpA"
                     /locus_tag="ACFM5C_000980"
     CDS             7777..9324
                     /gene="atpA"
                     /locus_tag="ACFM5C_000980"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFC6068709.1"
                     /translation="MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGL
                     SDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRE
                     LVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVG
                     RGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAM
                     EHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGG
                     IRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWA
                     INNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFK
                     SSYAYQA"
     gene            9349..10224
                     /gene="atpG"
                     /locus_tag="ACFM5C_000981"
     CDS             9349..10224
                     /gene="atpG"
                     /locus_tag="ACFM5C_000981"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HFC6068710.1"
                     /translation="MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARP
                     YAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLA
                     QVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQR
                     YEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALA
                     VLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAA
                     ITTELSEIVAGAAAV"
     gene            10262..11659
                     /gene="atpD"
                     /locus_tag="ACFM5C_000982"
     CDS             10262..11659
                     /gene="atpD"
                     /locus_tag="ACFM5C_000982"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFC6068711.1"
                     /translation="MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQL
                     LGDGVVRAIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDT
                     DKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRV
                     ALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTL
                     AEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLG
                     IYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDK
                     LTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYM
                     VGSIEEAVEKAKTLN"
     gene            11670..12092
                     /locus_tag="ACFM5C_000983"
     CDS             11670..12092
                     /locus_tag="ACFM5C_000983"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HFC6068712.1"
                     /translation="MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSL
                     VRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTILADVAVRSAEMDQARAEEAKKAA
                     EAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK"
BASE COUNT         2996 a         3138 c         3160 g         2941 t
ORIGIN      
        1 ttttcaatta tttgccgttt tggtgcgaac cgctgccttt gcccgtttca gacggcattg
       61 tccgaaatgg ttgcctgctt cctgccttat tgacaaaaaa atgctttccc gataatatcc
      121 tacgaaaatt aacctgccga tttgacacag cttgcgggca taacagctaa agcgttccga
      181 caattccagc tttatcttcc gcgcccgttg tgtccgacat cgggctttgt tgtatgggaa
      241 agacaatgat tattttggac aaggtttcca agcattacca aacgcgcgac aagacccgtt
      301 ttgccgccgt cgagccgacc agcctcgaaa tccgcgacgg cgaaatcttc gggctgatgg
      361 gctattccgg cgcgggcaaa tccaccctgt tgcggctgat taacctgttg gaacgccccg
      421 acacgggcaa ggtcaacgtc tgcggacaag agctgaccgc gctcgatgcc gccgcattgc
      481 gtcaggctcg gcagaatatc ggcatggtgt ttcagcagtt caacctgttg aacaaccgca
      541 ccgtcgccgg caacgtcgcc ttcccattgg aaatcgccgg atggccgtct gaaaaaatca
      601 aagcgcgcgt tgccgaatgt ctcgaaatcg tcggactgac cgaacgcgcc ggccactatc
      661 ccgcccagct ttcaggcggg cagaaacagc gtgtcggcat cgcccgcgca ctcgcgccca
      721 aaccccaagt catcctcgcc gacgaaccca cttccgccct cgaccccgcc accacgcgca
      781 gcgtcttgga atgtttggaa gacatcaaca aacgattcaa cgtaaccatc gtcatcgtaa
      841 cccacgaaat gagcgttatc agacgactgt gcgaccgcgc cgccctgttg gataaaggca
      901 aagtcgtcga aatcgtcgaa gtacgcggca accaaatcca cgcccgatcc gacatcgggt
      961 gcgaactgat tcgggaggac tgaatatggc aggcttaaca tttgaacaaa ccgtttccaa
     1021 catcatcggt atgaaaggcg aaatcgtccg cgcattgggc gaaaccttcg taatggtcgg
     1081 tttgtccacc acattcgccg tcgttttcgg cacgttgctg ggcgtgttgc tcttcgtaac
     1141 ttccagccgc caactgcatt acaacaagcc ggtgaacttc ctgctcgaca acctcgtcaa
     1201 cctcatgcgc gccttcccct tcgtcatttt gatgattgcg atgatacccg ccacacgcgc
     1261 catcgtcggc agcaccatcg gcccggttgc cgcctcgctg gtgttgagcg tgtcgggatt
     1321 gttttatttt gcccgactgg tggaacaaaa cctgcgcgaa gtccccaaag gcgtaattga
     1381 agccgccgcc gcgatgggtg cgccgccggt tgccatcgtc cgcaaagtcc tcttaaacga
     1441 agcgcgcgcg ggcatggttt ccagcattac cgtgcttgcc atcgggcttt tgtcatacag
     1501 cgcggcggca gggatgatag gcggcggcgg cttgggcgac ctcgccatcc gctacggcta
     1561 ctaccgctac caaaccgaag tcatcgtctt catcgtcgcc ctcctcgtgc tgctggtcat
     1621 cctgattcaa agcaccggca acgcattggc gcggaaattg gataaacgtt aaacccgaat
     1681 gccgtctgaa cgccaaaacc cccaccgcta tccgaaaaat gctataaaat ccccctgttc
     1741 gcggcaaatg ccgtctgaac gccgaatctg gacggcagga ctccctgccc gtcatttttg
     1801 tttgaaactg ccacaacatc aggagaaaat atgaaaacct tcttcaaaac cctttccgcc
     1861 gccgcactcg cgctcatcct cgccgcctgc ggcggtcaaa aagacagcgc gcccgccgca
     1921 tccgcttctg ccgccgccga caacggcgcg gagaaaaaag aaatcgtctt cggcacgacc
     1981 gtcggcgact tcggcgatat ggtcaaagaa cacatccaac ccgagctgga gaaaaaaggc
     2041 tacaccgtca aactggtcga gtttaccgac tatgtgcgcc cgaatctggc attggctgag
     2101 ggcgagttgg acatcaacgt cttccaacac aaaccctatc ttgacgactt caaaaaagaa
     2161 cacaatctgg acatcaccga agtcttccaa gtgccgaccg cgcctttggg actgtacccg
     2221 ggcaagctga aatcgctgga agaagtcaaa gacggcagca ccgtatccgc gcccaacgac
     2281 ccgtccaact tcgcccgcgt cttggtgatg ctcgacgaac tgggttggat caaactcaaa
     2341 gacggcatca atccgctgac cgcatccaaa gcggacattg ccgaaaacct gaaaaacatc
     2401 aaaatcgtcg agcttgaagc cgcgcaactg ccgcgtagcc gcgccgacgt ggattttgcc
     2461 gtcgtcaacg gcaactacgc cataagcagc ggcatgaagc tgaccgaagc cctgttccaa
     2521 gaaccgagct ttgcctatgt caactggtct gccgtcaaaa ccgccgacaa agacagccaa
     2581 tggcttaaag acgtaaccga ggcctataac tccgacgcgt tcaaagccta cgcgcacaaa
     2641 cgcttcgagg gctacaaatc ccctgccgca tggaatgaag gcgcagccaa ataaggcagt
     2701 cgtataaaat gatgccgtct gaaccgtatc cgtgttcaga cggcattttt gtcctttaat
     2761 ccgccattcc ctgccattcc gccgaatccg gcgtatcgat tccgaacagc gacaaagcgt
     2821 gtgcaacact gtgcgccact atgtcgtccg ccgtctgcgg tttgcggtac atcgcaggaa
     2881 cagggggaaa caccacgccg cccatttccg ttacccgctt catattgtcc aaatgggcaa
     2941 ggttcagcgg cgtttcgcgc accatcagca ccagccgccg cctttccttc aaaaccacat
     3001 ccgccgcacg cgtcaagagg ttgtcgccga agccgtgcgc gaccgaggca agcgtccgca
     3061 tcgaacaggg ggcgaccagc atcccgtccg ttttaaacgt accgctggca atgcacgccc
     3121 cgatattgcc gatcggatgc acgaagtccg ccaaggcata tacctcatct ctcgcataag
     3181 ccgtttccga agcgcgcgcc atctccgcac ctttcgatac cacaaggtgc gtttcgatat
     3241 cttgcgcgcg taaaagttcc aaagccttca cgccgtattg gaaaccgctc gccccactga
     3301 tgccgattat caaacgccgt accatcatcc gcctttccca taaaaccgcc tgcaacggca
     3361 aaccggctat tatagtgaaa aaacagaaat ccgataaata cggatacaaa ttgtcggcaa
     3421 cacccaatat ccgataaaat atccgattta acatcctatc tgaataggca cgggagggcg
     3481 gtatggcaaa agtaaaaggc ggattggggc gcggtttgga ttcgctgctc gccaacggcg
     3541 cagacaacag cagcggcgac cgattgacca cggttgcggt taaagatatc cggcccggcc
     3601 gctatcaggc gcgtgttcaa atcgatgacg aagccttgca ggagctggcg gattcgatta
     3661 aggcgcaagg cgtgatacag cccgtcatcg tgcgcgaaca cggactgtcc cgatacgaac
     3721 tgattgcggg cgaacgccgt tggcgcgccg cacagattgc cggcctgacc gaaatccccg
     3781 ccgttatcaa aaccatcagc gacgaaaccg cattggcaat gggtttgatc gaaaacctcc
     3841 agcgcgaaaa cctcaacccc atcgaagaag cacaaggctt gaaacgcctt gccgacgagt
     3901 tcggactgac ccacgaaacc atcgcccagg ccgtcggtaa aagccgaagc gcgatttcca
     3961 acagcctgcg ccttttaagc ctgcccgaac ccgtgcagga aatgctttac caacgccgcc
     4021 tcgaaatggg acacgcccgc gcattgctga ccctgcccgt cgtcgaacag ctcgagttgg
     4081 cgcaaaaggc cgtcaaaaac ggctggtcgg tgcgcgaagt cgagcgccgc agccaagccg
     4141 cccttcaaaa caaacgtccc gagcccaaaa agactgccgc cgccgacatc ggccgcctga
     4201 atgatttgct gactgaaaaa ctgggtgtca acgccgaaat caaaaccgcc aaccataaaa
     4261 aaggcagaat catcctgcat ttcgacacgc ccgaaacctt cgaccatatc ttgaagcagt
     4321 tgggcataga ttaccgacct taattttgcg ggatataccg tctgaaatat agagaatagc
     4381 tttccagatt ttaagtggga aatataattc tattgacatt ttttctgctt cacgtaagaa
     4441 tcgttttcct gttttcattt ttaattttcg aggaaattat gaacacacgc atcatcgttt
     4501 cggctgcgtt cgttgcgttg gcattagcag gttgcggctc aatcaataat gtaaccgttt
     4561 ccgaccagaa acttcaggaa cgtgccgcgt ttgccttggg cgtcagccca aatgccgtaa
     4621 aaatcagcaa ccgcagcaat gaaggcatac gcatcaactt taccgcaact gtgggtaagc
     4681 gcgtgagcca atgctatgtt accagtgtaa tcagcacaat cggcgttacc acttccgatg
     4741 caatttgttt gggaggcgga acgcacaaag gcaaaagtca atgcaatgct ttgcttaaag
     4801 cggcaggccg ttgctaatcc tttattcgga aaaggtcgtc tgaaaatatt ttcagacgat
     4861 cttttattta ttgagcaaat tccccaaact gccgacaatc cgaccgataa actgctacaa
     4921 tttcgcgttg attttttatt atttccacgt aaagcaaaca aatcacgtaa gaacattaaa
     4981 agtgtaaaga aattgcggac aaactcctta atatcctgta attatatgta atgtgtgtta
     5041 gaatgacacc tgtcgccgtt attcaggcgg cgagcgcggc ggattgggat acgttgtttc
     5101 acaaagatta actgtcgctt gacgtaataa ggcttctaaa ttatattagc cgcgccccaa
     5161 atccgaggcg gaaacattcc ctttatgaag cagattatca tcctacaatc cgccgtattg
     5221 tccatatgcg ccgcagttgc ctttgctgta tggggttttg ccggattcct ttcggcggtc
     5281 ggtggcggtt tgtcctacct gcttcccacg tttgttgcag ttttactttt aaaacttttc
     5341 aggggaaacc ctttcctgca aagcaggatg ttcgtcttcg gagagatttt aaaagtagtg
     5401 ctgtcgctgt tgtccatgct cgccgtattt gctgtatggc atcaatcgtt ggtgttcgcc
     5461 ccgtttctga tggggctgct cggtgtcagc catttggttt ttttagtatt gttgagagtg
     5521 aaagattatg gcaggtgaaa ccattaccgc tgccgactac atcaagcacc acttgcagag
     5581 cttgaccagt ttgtcggatg ttactcaggg tcagggactg aaaaacattg ctgatttttc
     5641 gtttattaac cttgatgccg tcttttttgc cgtcctgttg ggcgtaatcg gcagcttcct
     5701 gttgtggcgc ggtgcgaaaa aagcaacggc aggcgttccc ggacgtttcc aggctgccgt
     5761 ggaaatcttg tttgagtttg tggacgatat gtgtaagagc atcattcaca acgaaaagtc
     5821 tagaaaagcc gtcgcgccgt tgggtctgac gctgtttgtc tggatttttc tgatgaacgc
     5881 gatggatatg ctgccggtcg atttgctgcc gatggtatgg cagggcatta ccggcaacca
     5941 tcacgccctg ctgcgcgtcg taccgactgc cgatttgaac accactttgg cactcgctgt
     6001 cggcgtgttg ctgatttgta tctattacaa catcaaaatc aaaggattgg gtggctggtt
     6061 tcacgagttg ttcagcgcgc cgttcggtgc aaaactcgca cctgcgaact ttctgttgaa
     6121 tttggtcgag tttctttcta aaaccgtatc ccacggtatg cggttgttcg gcaatatgta
     6181 tgcaggcgag ttggtattct tgttgatagc cttgcttggc ggtgcttggg cggcttccgg
     6241 cagcgtcgaa gtcatggatc cgattctgtt tgtattccac attattgccg gtttggcatg
     6301 ggcgattttc catattttgg tgattaccct gcaggcgttt attttcatgg cgttggcgtt
     6361 cgtctatatc ggacaggcac atgatgcgca ctgattttcc taagtagttt gtttttgtag
     6421 tttaaccttt gtttctttaa ggagtttaaa atgggtttga ttgctatcgc atgtggtttg
     6481 atcgttgcat tgggtgcatt gggtgcctct atcggtatcg caatggtcgg ttctaaatat
     6541 ttggagtctt ctgcccgtca gcccgaactg atcggtccgc tgcaaaccaa actgttcctg
     6601 attgccggtt tgattgatgc cgcattcttg attggtgtcg ccattgcact gctgttcgcc
     6661 ttcgttaacc cgtttgcagg tgcataatca ggacggattc gtccgttccg tacaggcgca
     6721 gcctgtttga ttaaccccag tacgaaggtt aagtaacgtg aatatcaatg caacattatt
     6781 cgctcaaatc atcgtctttt tcggtttggt atggtttacc atgaaattcg tgtggccgcc
     6841 gattgcaaaa gctttggatg agcgtgccgc aaaagtcgcc gaaggcttgg ctgccgccga
     6901 gcgtggtaaa agcgattttg agcaggctga aaaaaaggtt gcagaactct tggcagaagg
     6961 gcgtaatcag gtttccgaaa tggttgccaa cgccgaaaaa cgtgccgcca aaattgtcga
     7021 agaagccaaa gaacaggctt cttccgaggc ggcgcgcatt gcagctcagg caaaggccga
     7081 tgtggagcag gaattgttcc gcgcacgcga atccctgcgc gagcaggttg ccgtgttggc
     7141 tgtcaaaggt gccgaatcta ttttgcgcag cgaagtcgat gcttccaaac acgcaaaact
     7201 gctcgatacc ctgaaacagg agctgtaatc ttatggcaga gttcgcaacg attgccagac
     7261 cttatgcaaa ggcattgttc ggtctggctc aggaaaaaaa ccaaattgag tcttggttgg
     7321 gcggactgga aaaacttgcg gcggttgttc aggaagggaa ggtggcttca ttgattgacc
     7381 gtcctgaaac gaatgcttca gaaaaagcag atatcctcat cgatttggtc ggtttgaaag
     7441 acaaggagtt gaaaaacttt gttatcgtct tggccgggca gaaacgtttg tcgatattgc
     7501 cggaagtata tgctcaatat caagacttga ccttatcatt caaccatatc aaatctgcca
     7561 tcatttacag tgcctatccg ttgaccgaca aacaggtcgg cgagttggcg caaatgctga
     7621 ataagcgttt cgacagcgag ctgaaaatct ctgtcgaaat cgaaccggag ctgattggcg
     7681 gcataaaagt tgaagtgggt gatcaggttt tggatttgtc tgtacaaggc aaattgagtg
     7741 ccttgtacac gactatgacg aattaggaga gttttcatgc agcttaatcc tgctgaaatt
     7801 agcgatttga ttaaagccaa gatcgaaaat ctgtctgtaa atgccgaagt gcgtacccgt
     7861 ggtacggtga tttcggtaac tgacggtatc gttcgcatcc atggtttgtc agatgcaatg
     7921 caaggtgaga tgctcgaatt cccgggtaac actttcggct tggcgatgaa cctggagcgc
     7981 gactccgtcg gcgccgtagt gttgggcgag tacgaacata ttaaagaagg cgacacggtt
     8041 acctgtaccg gtcgtatctt ggaagtgccg gtcggacgcg aactggtcgg acgcgtcgtt
     8101 gatgcattgg gtcggcctat cgacggcaaa ggcccgatta atacaacttt gaccgcccct
     8161 atcgaaaaaa tcgcaccggg cgtgattgcg cgcaaatcgg ttgaccagcc gatgcaaacc
     8221 ggtctgaagg cgattgactc tatggttcct gtcggtcgcg gtcagcgtga gttgatcatt
     8281 ggtgaccgtc aaaccggtaa aactgccgta gcactggatg ccatcgtcaa ccaaaaaggt
     8341 acgggtgtta tctgtatcta tgtcgctatc ggtcaaaaag catcttctat tgccaacgtg
     8401 gtccgcaaat tggaagagca tggcgcgatg gaacacacga ttgtggttgc tgcaactgct
     8461 tctgaagccg ctgcactgca atacatcgca ccttactccg gttgtacgat gggtgaattc
     8521 ttccgcgacc gcggcgaaga tgccttgatt gtttatgacg atttgtccaa acaggctgtg
     8581 gcttaccgtc aaatttccct gcttttgcgc cgtccgcccg gccgcgaagc ctatcccggc
     8641 gatgtgttct acctgcactc ccgtctgttg gaacgtgcgg cacgtgtcaa tgaacacgaa
     8701 gtggagaaat tgaccaacgg cgaagtaaaa ggcaaaaccg gttctctgac tgctttgccg
     8761 attatcgaaa cccaagcggg cgacgtatct gctttcgttc cgactaacgt catttcgatt
     8821 accgacggtc agattttctt ggaaaccgac ctcttcaacg ccggtatccg tcctgcaatc
     8881 aatgccggta tttccgtatc ccgcgtaggc ggtgctgcac aaaccaaagt gattaaaaag
     8941 ctgggtggcg gtatccgttt ggcgttggcg caatatcgtg aattggcggc gttctcgcaa
     9001 tttgcatccg atttggatga agctacgcgc aaacaattgg agcatggcga agtcgtaacc
     9061 gaactgatga aacagaaaca gttcagtacg ttgaatacgg ctgaaatggc tttgaccctt
     9121 tgggcaatca acaacggttc gtattctgat gttccggttg ccaaagctct ggcttttgaa
     9181 tctgaatttt tgagctttgt ccgtacccaa catccggaag ttttggaagc cgtcaatgct
     9241 tcaggtgcaa tgtccgacga gagcgagaaa acgcttgaag cagccatgaa atccttcaaa
     9301 tcttcttacg cctatcaggc ataaggcttg aagtgaaagg agtctgaaat ggcagtagga
     9361 aaagagattc tcaccaaaat ccgcagtgtt cagaataccc aaaagatcac taaagcgatg
     9421 cagatggtgt caacctctaa aatgcggaag actcaggaac ggatgcgttt ggcgcgtccg
     9481 tatgccgaaa aagtgcgtat ggtgatgagc catcttgcgc aaaccaatac cgatcatggt
     9541 attccgttac tggaatctca tcgggaaatc agacgtgtcg gttttatttt gattacgtct
     9601 gataagggtt tgtgtggcgg tttgaacgcc aacgtgctga aaaagttttt ggcacaagtt
     9661 caagagtatc ggaatcaagg tattgaagag gaaatcgtat gccttggcag taaaggtctg
     9721 atggcgtgtc agagcattgg tctgaatgtg gttgccagtg ccgtaaattt gggcgatacc
     9781 ccaaaaatgg aaatgctgct cggacctttg acagaactct tccaacggta tgagaaacat
     9841 gaaattgaca gaatccatct ggtgtattcg ggttttgtca ataccatgcg tcaagaaccg
     9901 agaatggaag tattgctgcc tatcggtgag aacgtgattg gcgattcagc tcccaaatca
     9961 ccgttcagct gggaataccg ctacgaaccg actgcacttg cagtgttgga atatctggtt
    10021 cgccgctatt tagagtctgt ggtttatcag gcgttgagcg acaatatggc atccgaacag
    10081 gcagcccgca tggttgccat gaaagctgca acagacaatg caggcaatgc catcaaagag
    10141 ttgcgtttgg tatataacaa atcgcgtcaa gctgcgatta ccacggaatt gtcagaaatt
    10201 gtagcaggtg cggcggctgt ctgatgccgt ctgaatcctg tacggaaatt aggatacgat
    10261 aatgagccaa ggcaaaatcg tacaaattat cggtgcggtt gttgacgtgg aatttccacg
    10321 cgacatgatt ccgcgcgttt acgacgcttt gaaattagac gaaaacggtc tgactttgga
    10381 agtccaacag cttttgggcg acggcgtagt ccgtgccatt gcgatgggca gctcggacgg
    10441 tttgaaacgc ggcatgactg tgagcaatac cggtgcgccc attactgtgc cggtaggtaa
    10501 aggtacgttg ggacgcattg tcgatgtatt gggaacgcct gttgacgaag caggtccgat
    10561 cgataccgac aagagccgtg ccatccacca agctgcccct aagtttgacg aactgtcttc
    10621 cacaaccgaa ttgctcgaaa cgggcattaa agtgattgac ttgctgtgtc cgtttgccaa
    10681 aggcggtaaa gtaggtctgt tcggcggtgc cggtgtgggt aaaaccgtga acatgatgga
    10741 attgatcaac aacatcgcca aagcgcacag cggcttgtcc gtgttcgcag gcgtgggtga
    10801 gcgtacccgc gaaggtaacg acttctacca cgagatgaaa gattccaacg tattggataa
    10861 agtggcaatg gtttacggtc agatgaacga acctccgggc aaccgtttgc gcgtcgcatt
    10921 gaccggtttg accatggcgg aatacttccg tgacgaaaaa gacgaaaacg gcaaaggccg
    10981 cgacgtattg ttcttcgtgg acaacatcta ccgttacacc ctggctggta ccgaagtatc
    11041 cgcattgttg ggtcgtatgc cgtctgcagt gggctaccaa ccgacattgg cagaagaaat
    11101 gggtcgtttg caggagcgta ttacctctac ccaaaccggt tctattactt ccatccaagc
    11161 cgtatatgta cctgcggacg acttgaccga cccgtctccg gcaacaacgt tcgcccactt
    11221 ggacgcaacc gtcgtattga gccgcgatat tgcctctttg ggtatttacc cggcagtcga
    11281 tccgcttgat tctacttcgc gccaactgga tccgatggta ttgggtcaag agcactacga
    11341 cgtagcgcgc ggcgtacagt ccaccctgca gaaatacaaa gaattgcgcg acatcatcgc
    11401 catcttgggt atggacgaat tgtctgacga agacaaactg accgtaatgc gtgcgcgtaa
    11461 aatccaacgc ttcctgtccc aaccgttcca cgttgccgaa gtgtttacag gttctccggg
    11521 caaatatgtc gccctgcgcg ataccattgc cggcttcaaa gccatcttga acggcgaata
    11581 cgaccatctg cccgaacagg cattctacat ggtcggcagc atcgaagaag cggttgagaa
    11641 agcgaaaacc ttaaactgag gaggtcggca tgagcatcat gcaagttgag gtggtcagta
    11701 gcgagcaaaa catctattcg ggcgaagcca gctttgtagt ggttccgacc gttcaaggtg
    11761 agcttggtat ttacccgcga cacgagccga ttatgagttt ggtgcggccg ggggctttgc
    11821 gtttgaccgt tccgggcgag gataaagagg ttttggttgc tgtttccggc ggtgttttgg
    11881 aagtacagcc tgataaagta actatcttgg cggatgttgc cgtccgcagt gcggagatgg
    11941 atcaggcacg tgcggaagag gcgaaaaaag ccgcagaagc gggcatttcc caagctaaag
    12001 acgataaggc tttggcggag gcgcataaag cattggctgc tgcgattgca cagctcaaaa
    12061 ctttggacta tatccgttcg cacaagaaat aaacttgttt ggtttggaaa agcacgaccg
    12121 tttggtcgtg ctttttattt tccggattta aattaaagac tgtgtttgga tatggcgttg
    12181 gcaggcatag cctgctttaa ggtattcaat agggcagcct gccgcctaac cgaaa
//
LOCUS       DAXHNP010000049        12217 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.049, whole genome shotgun sequence.
ACCESSION   DAXHNP010000049 DAXHNP010000000
VERSION     DAXHNP010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12217
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.049"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            199..1122
                     /locus_tag="ACFM5C_000984"
     CDS             199..1122
                     /locus_tag="ACFM5C_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6068713.1"
                     /translation="MENQRPLLGFALALLAAMTWGTLPIAVRQVLKFVDAPTLVWVRF
                     TVAAAVLFVLLALGGRLPKRRDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQ
                     VLWQISPFTMIVVGVLVFKDRMTAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGV
                     LLCAAGSMAWVCYAVAQKLLSAQFGPQQILLLIYAASAAVFLPFAEPAHIGSLDGTLA
                     WVCFAYCCLNTLIGYGSFGEALKHWEASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAA
                     PDMNGLGYVGALVVVGGAVTAAVGDRLFKRR"
     gene            complement(1187..2575)
                     /gene="fumC"
                     /locus_tag="ACFM5C_000985"
     CDS             complement(1187..2575)
                     /gene="fumC"
                     /locus_tag="ACFM5C_000985"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFC6068714.1"
                     /translation="MNTRTEHDTMGNVEVPSEAYWGAQTQRSRNNFKIGGETLPQPLI
                     YALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGRLDGQFPLVVWQTGSGTQSN
                     MNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLI
                     PAVKALRDTLDKKAQAFAPIVKIGRTHLQDATPLTLGQEFSGYVSQLDHGLGRLNDAL
                     KDLYELALGGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSAPNKFEALGGRDAAVAA
                     SGALKTLAASLNKIANDIRWLASGPRCGLGEIKIPENEPGSSIMPGKVNPTQCEAMTM
                     VCCQVFGNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEP
                     VPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNDKSLRETAVELGLLTGEEFD
                     ELVVPADMVHPR"
     gene            complement(2716..4695)
                     /gene="tkt"
                     /locus_tag="ACFM5C_000986"
     CDS             complement(2716..4695)
                     /gene="tkt"
                     /locus_tag="ACFM5C_000986"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFC6068715.1"
                     /translation="MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNH
                     NPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYGY
                     TDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
                     HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDT
                     AAIQAAIEAARAETGKPSIICCKTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGW
                     TYPAFEIPQEIYDAWNAKEQGAKLEADWNELFAQYQAKYPAEAAEFVRRMDKKLPENF
                     DGYVQTALKEVCAKAETIATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVS
                     VTRDKGGNYIHYGVREFGMGAIMNGLALHGGVKPFGATFLMFSEYERNALRMAALMKI
                     NPVFVFTHDSIGLGEDGPTHQPIEQTATLRLIPNMDVWRPCDTAESLVAWAEAVKAAD
                     HPSCLIFSRQNLKFQARSEQQLNDIKRGGYIISEAQGNAQAVIIATGSEVELALEAQK
                     ALAAQNIAVRVVSMPSTNVFDRQDAAYQATVLPEGLPRIAVEAGHADGWYKYVGLNGA
                     VVGINRFGESAPADLLFKEFGFTVDNVVDTVKSVL"
     gene            5222..6718
                     /gene="ccoG"
                     /locus_tag="ACFM5C_000987"
     CDS             5222..6718
                     /gene="ccoG"
                     /locus_tag="ACFM5C_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFC6068716.1"
                     /translation="MTTENQAGSPASGIGTSEQTKAAPKAKKTFDPRASVIQIHPEGE
                     RIHPKKAEGRFAKLRIAAVLATQFVFYVIPWFNWSGRQAVVFNIPERHFFIFGLSLGV
                     GDLIYLALLLMICAFGLFWWTTIAGRLWCGYSCPQTVYTEIMLWIDNLVEGDRNKRLK
                     LEKSPWNFTKIRIKATKYLLIFLVCAWTGITFAGWFVPIRQFVPDLFTGAAGGGAMFA
                     TAFYGFMTFFFAHIMREKVCLHMCPYARFQSAMFDKDTLIVSYDAERGEPRGARKKTV
                     NKEEAGLGDCINCAMCVQVCPVGIDIRNGLQYQCIGCAACIDACDEIMDKMGYPRGLI
                     RYTTESALEHEYSEKDIKKRLLRPRVAGYGAVLALVIIAFLAGLSTRKMVEVDILKDR
                     GVLVRENAKGWLENAYSLRIINKSEKEQLITASVKGFDEIALTGLPEGGIKVAPRETV
                     TLPVQVSTIPEYADKGSHPIEFTFQYRESGAPDGKPVVLEEDATFIGE"
     gene            6721..7269
                     /locus_tag="ACFM5C_000988"
     CDS             6721..7269
                     /locus_tag="ACFM5C_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFC6068717.1"
                     /translation="MSQNTPIKPWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDL
                     VTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGKQPLNLLL
                     MHPTRKADDQTVALKPVGSAQNGRAEYEAVFKTLSPTNHWYVRVEDAAGVWRVENKWI
                     TSQGNAVDLTPMDKLFNNAGSK"
     gene            complement(7611..8786)
                     /locus_tag="ACFM5C_000989"
     CDS             complement(7611..8786)
                     /locus_tag="ACFM5C_000989"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent flavin oxidoreductase"
                     /protein_id="HFC6068718.1"
                     /translation="MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGT
                     IASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKA
                     VKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKYVALLPILSESRGINIVLKR
                     WMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEK
                     IPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVV
                     EFMSVAGLPARGVRTKFLDSYIKRESKLQTNAKADPRRCTQGLNCLTSCGLRDGLSKA
                     GQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATLGR"
     gene            complement(9345..9419)
                     /locus_tag="ACFM5C_000990"
     tRNA            complement(9345..9419)
                     /locus_tag="ACFM5C_000990"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9384..9386),aa:Glu,seq:ttc)
     gene            complement(9437..9513)
                     /locus_tag="ACFM5C_000991"
     tRNA            complement(9437..9513)
                     /locus_tag="ACFM5C_000991"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9477..9479),aa:Arg,seq:acg)
     gene            9631..11016
                     /locus_tag="ACFM5C_000992"
     CDS             9631..11016
                     /locus_tag="ACFM5C_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HFC6068719.1"
                     /translation="MIVASRWPLLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALV
                     KFEQGRVVRHEWLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELFSVLKGCVLV
                     AHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLYPQFYKHSLDSIIERLGIVVED
                     RHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPDS
                     MGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKASFDWCNTEAVRFFPALGRLHAYK
                     IKAELVRRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTTALKNGVTDNPPTGLFA
                     NKKAARRALSSWAETYGLCPAAAGILSDGYTEDEPCPVYVSGRCDKACGRSDEQVLAF
                     AHKLPILDWGKMHEVEITETDPLTGEKVVLHGMGGALEMGDGLWYFDKDLPDAFKAKF
                     KTDRKNIKEIG"
     gene            complement(11227..12006)
                     /locus_tag="ACFM5C_000993"
     CDS             complement(11227..12006)
                     /locus_tag="ACFM5C_000993"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6068720.1"
                     /translation="MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSR
                     LGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAKMQQGDTILLDKNATG
                     FLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDR
                     LAALAEHPLVGEYGHSFRFVPVTTRAANPSGLGGKRIPELLKNNSIEQALHTKFTPES
                     TRFMICGNPEIVKDTFQTLLDMGYAMHRNRIPGQIMMENGF"
BASE COUNT         2733 a         2820 c         3514 g         3150 t
ORIGIN      
        1 gtactggttt ttgttaatcc actatatttt aaaattcagg cggtgttttc aaatagcgcg
       61 aagcaatagc cgagcttcag ccggtttgtt tgaaatcaaa gggttggaat caaacgccaa
      121 acgcttgaac catcattgcc cgatgcggca aaccggcatc gtccggcaat acggttgttt
      181 aaaaatagga aaatcaggat ggaaaaccaa aggccgctcc taggcttcgc gttggcactt
      241 ttggcggcga tgacgtgggg aacgctgccg attgccgtgc ggcaggtatt gaagtttgtc
      301 gatgcgccga cgctggtgtg ggtgcgtttt accgtggcgg cggcggtatt gtttgttttg
      361 ctggcactgg gcgggcggct gccgaagcgg cgggattttt cttggtgctc attcaggctg
      421 ctgctgctcg gcgtggcggg catttcggca aactttgtgc tgattgccca agggctgcat
      481 tatatttcgc cgaccacgac gcaggttttg tggcagattt cgccgtttac gatgattgtt
      541 gtcggtgtgt tggtgtttaa agaccggatg actgccgctc agaaaatcgg cttggttttg
      601 ctgcttgccg gtttgcttat gttttttaac gataaattcg gcgagttgtc gggtttgggc
      661 gcgtatgcga agggcgtgtt gctgtgtgcg gcaggcagta tggcatgggt gtgttatgcc
      721 gtggcgcaaa agctgctgtc ggcgcaattc gggccgcaac agattctgct gttgatttat
      781 gcggcaagtg ccgccgtgtt cctgccgttt gccgaaccgg cacacatcgg aagtttggac
      841 ggtacgttgg cgtgggtttg ttttgcgtat tgctgcttga atacgttaat cggttacggc
      901 tcgttcggcg aggcgttgaa acattgggag gcttccaaag tcagcgcggt aacaaccttg
      961 ctccccgtgt ttaccgtaat attttctttg ctcgggcatt atgtgatgcc tgatactttt
     1021 gccgcgccgg atatgaacgg tttgggttat gttggcgcac tggtcgtggt cgggggtgcg
     1081 gttacggcgg cggtggggga caggctgttc aaacgccgct agttcgcagg caacggaaaa
     1141 tgccgtctga acgaggtttc agacggcatt ttatttgagg gaaagattag cgcggatgaa
     1201 ccatatcggc aggaacgacc agttcgtcaa attcttcgcc cgtcagcaag cccaactcaa
     1261 cggcggtttc gcgcagcgat ttgtcgtttt tgtaggcggt tttggcgact ttggcggcgt
     1321 tttcgtaacc gattttgcgg tttaacgcgg taacgagcat cagggaatgg tgcaggaaat
     1381 agtcgatttt ttccggtacg ggttcgatgc cgacggcgca gtgttcgttg aagctgttgc
     1441 acgcgtcgcc caagaggcgg atggattgca agaggttgta ggcgataacg ggcatataga
     1501 cgttcagctc gaaattgccc gacgcgcccg ccataccgat ggtaacgtcg ttgccgaaca
     1561 cttggcagca caccatcgtc attgcttcgc attgggtcgg gttgactttg cccggcatga
     1621 tggacgaacc cggctcgttt tcggggattt tgatttcgcc caaaccgcaa cgcgggccgc
     1681 ttgccagcca gcggatgtcg ttggcgattt tattcaggct tgccgccagc gttttcaatg
     1741 cgcccgaagc ggcaacggcg gcatcgcgtc cgcccaaggc ttcaaatttg ttcggcgcgc
     1801 tgacaaacgg caagccagac agttcggcga gtttagcagc agctttttcg gcgtattcgg
     1861 gatggctgtt caaacccgtg ccgaccgccg taccgcccaa agcaagttca tacaagtctt
     1921 taagcgcatc gttcagacgg cctaaaccgt gatcaagctg ggaaacgtag ccggaaaatt
     1981 cctgtcccaa agtcagcggc gtcgcgtctt gcaagtgggt gcggccgatt ttaacaatgg
     2041 gggcgaaagc ttgggctttt ttgtccaagg tatcgcgcag ggcttttacg gcggggatga
     2101 ggtggcggtt gatttcaatc gcggcggcaa cgtggatagc ggtcgggaat gcgtcgttgg
     2161 tcgattgcgc gtggttcaca tggtcgttgg gatggacggg ctgataagcc gccaaacccg
     2221 taccggcgat ttcgttggcg cggtttgcca gcacttcgtt catgttcata ttggactgcg
     2281 tgccggagcc ggtctgccaa accactaaag gaaactgtcc gtcaagcctg ccgttcaaca
     2341 catcatccgc cgcctgcgta atcaaatccg cctgttccgg cttaatcctg ccgagggaaa
     2401 cattggtcgc ggcagcggct tttttcacca acgccaaagc ataaatcagc ggctgcggca
     2461 gggtttcgcc gccgattttg aaattgttgc ggctgcgctg ggtctgcgcg ccccaatagg
     2521 cttcggacgg gacttcgaca ttgcccatgg tgtcgtgttc ggtgcgagtg ttcatacgtt
     2581 tctccttttg aaatgtgaat aagagtgatt cgcaaatatt ataatggaga ttggtggaat
     2641 gaggaagcat taaggaggga gggtgtgaaa atgccgtctg aaaagcgttc agacggcatt
     2701 tgtttaggtg tgggtttaca gcacggattt cactgtatcg accacattgt ccacggtaaa
     2761 gccgaattct ttgaagagta agtcggcagg ggcggattcg ccgaagcggt tgatgccgac
     2821 gactgcgccg ttcaaaccga cgtatttgta ccagccgtcg gcgtgtccgg cttctacggc
     2881 gatgcgcggc agaccttcgg gcaggacggt ggcttgatag gcggcgtctt ggcggtcgaa
     2941 tacgttggtg gacggcatgg aaacgacgcg tacggcgatg ttttgcgcgg cgagggcttt
     3001 ttgcgcttcc aaagccagct cgacttcgga accggtggca atgatgacgg cttgcgcgtt
     3061 gccttgggct tcgctgatga tgtagccgcc gcgtttgatg tcgttcagtt gttgttcgct
     3121 gcgcgcttgg aatttcaggt tttgacggct gaaaatcagg caggacggat gatcggcggc
     3181 tttgacggct tctgcccaag ccaccagaga ttcggcggtg tcgcacggac gccatacgtc
     3241 catgttcgga atcaggcgca gggtggcggt ttgctcaatc ggctggtggg tcgggccgtc
     3301 ttcgcccaaa ccgatggaat cgtgggtgaa cacaaataca gggttgattt tcatcagtgc
     3361 cgccatgcgc aaggcgttgc gttcgtattc gctaaacatc aggaaggtcg cgccaaaggg
     3421 ttttacgccg ccgtgcaggg caagaccgtt cataatcgca cccataccga actcgcgcac
     3481 gccgtagtgg atgtagttgc cgcctttgtc gcgggtaacg gagacgctgt ttgaccagtc
     3541 ggtcaggttg gacggggtca ggtcggccga accgcccacc aattcaggca actcttttgc
     3601 caagatttcg atgctgtttt ggctggcttt gcgggtagcg atggtttcgg ctttggcgca
     3661 cacttctttc aatgccgtct gaacgtaccc gtcaaagttt tccggcagct ttttatccat
     3721 acggcgcaca aattctgcgg cttcggcagg atatttggct tgatattgcg cgaacagttc
     3781 gttccagtcg gcttccagtt tcgcgccttg ttctttggca ttccacgcat cgtaaatttc
     3841 ttgcgggatt tcaaaggcgg ggtaagtcca gcccaaatgt ttgcgcgtgg cttcgatttc
     3901 gtccgcgccc aaaggtgcgc cgtgggtttt gtggctgcct tctttgttgg cactgccttt
     3961 gccgattaag gttttgcagc agatgatgga cggtttgccg gtttcggcac gtgcggcttc
     4021 gatggcggct tgaatggcgg cggtgtcatg accgtttacg ttaggaacga cgtgccagcc
     4081 gtagctttca aagcgttgcg ggatgttttc ggtaaaccag ccgtccactt taccatcaat
     4141 ggaaatattg ttatcgtcat acaaaacaat cagtttgccc aagcctaaag tgccggcgag
     4201 tgagcaggct tcgtgcgata cgccttccat caggcagccg tcgcccatga agacgtaggt
     4261 gtaatgatcg acgatgttca aaccgtcttt attaaattcg gcggcaagga ttttttctgc
     4321 caatgccata cccaccgcgt tggcaatccc ttgccccaac gggccggtcg tggtttccac
     4381 gccgtcggtg tagccgtatt cgggatggcc gggggttttg ctgtgcagtt ggcggaagtt
     4441 tttcaagtct tcaatgctta ggttgtagcc ggtcaggtgc agcaggctgt acaacagcat
     4501 agacgcgtgg ccgttggaga ggacgaagcg gtcgcggttg tagaatttgg ggttggcggg
     4561 attgtgattg aggaatttcg tccacaatgt ttccgccatt tccgccatac ccataggcgc
     4621 gccggggtgg ccggaattgg ctttttgaac ggcatcggcc gagaggaagc ggattgcgtt
     4681 tgccagttga gacattttgt attttccttg ctggtgtttc ggataagtgg ataatcggaa
     4741 ggcgttgatt atcgcccgat tcgcttatgc tttcaagaaa agggcggacg cgtgggaagg
     4801 cggcggcagg ggacaggcgg ggaaggattt tcgatttgcg ggcgaagcct gccattattc
     4861 cttttgaaat aaaatgttat agattgtgtg ccggattgtc gatagcgttt gtttatgagc
     4921 ttgcgccgtc ggttctgccg atatgggggt gtcggttttt ttagtctttt ttttaaccgt
     4981 attcggattt tgttcgggcg gtaaggtaaa atccaggcgt tttgatgcgg atgggaaatg
     5041 tatccgcccc atacatccgg acggcgcata aagttgtaca atagcggaaa tatattttgg
     5101 gaaaaacgga ttttctcaaa acttgaaaca caacgcctta aaaaacaaga aaaatgacgt
     5161 ctgaaaagca aacggcggcg gtaacgggca aaccatcaat caaaaatcta aggaatgcag
     5221 aatgaccacg gaaaaccaag ccggcagtcc ggcatccgga atcggcacgt ccgaacaaac
     5281 aaaagccgcg ccgaaagcaa aaaaaacatt cgatccgcga gccagcgtga ttcaaatcca
     5341 tcccgaaggc gaacgcatcc atccgaaaaa ggcggaagga cggttcgcca aactgcgtat
     5401 cgccgccgta ttggcgacgc agtttgtgtt ttacgtcatt ccgtggttca actggagcgg
     5461 caggcaggcc gtcgttttca atatccccga acggcatttc ttcattttcg gattgtcgtt
     5521 gggggtgggc gatttgattt accttgcctt gctgctgatg atttgcgcct tcgggctgtt
     5581 ttggtggacg acgattgccg ggcgactgtg gtgcggctat tcctgcccgc aaacggttta
     5641 caccgaaatt atgctgtgga tcgacaacct ggtcgaaggc gatagaaaca aacgcctgaa
     5701 gctggaaaaa tcgccgtgga atttcactaa aatccgcatc aaagccacca aatacctgtt
     5761 gattttcctt gtctgcgcgt ggacgggcat cacgtttgca ggctggtttg tccctatccg
     5821 ccagttcgtt cccgatttat tcactggagc agcaggcggc ggcgcgatgt ttgccacagc
     5881 gttttacggc tttatgacct tcttcttcgc acatattatg cgcgaaaaag tatgcctgca
     5941 tatgtgtccg tatgcacgtt tccaaagcgc gatgttcgac aaggacacgc tgattgtttc
     6001 ttatgacgcg gaacgcggcg aaccgcgcgg agcccgcaag aaaacggtca acaaggaaga
     6061 ggcgggtttg ggcgactgca tcaactgtgc gatgtgcgtc caagtctgcc ctgtcggcat
     6121 cgacatccgc aacggtctgc aataccaatg catcggctgc gccgcctgta tcgacgcgtg
     6181 cgatgagatt atggacaaaa tgggctatcc gcgcggatta atccgttata cgaccgaaag
     6241 cgcgctggaa cacgaatatt ctgaaaaaga cattaaaaaa cggctgctca gaccgcgcgt
     6301 ggcaggttac ggcgcggtgt tggcgttagt tatcattgcc ttcctggccg gtttgtccac
     6361 gcgcaaaatg gtcgaggtcg atattttgaa agaccgtggc gtactggtgc gcgaaaacgc
     6421 caaaggctgg ctggaaaacg catacagcct gcgtatcatc aacaaaagtg aaaaagaaca
     6481 gctcattacc gcaagtgtca aaggctttga cgaaatcgcc ctgaccgggc tgcccgaagg
     6541 cggtatcaag gttgccccgc gcgaaacggt aacccttccc gtccaagtgt ccaccattcc
     6601 ggaatacgcg gacaaaggca gccaccctat cgaatttacc ttccaatacc gcgaaagcgg
     6661 cgcgcccgac ggcaagccgg tcgtcttgga agaagatgca acctttatcg gagaataacc
     6721 gtgtctcaaa acactccaat caaaccttgg tacaaacacg tctggccgtg gatcttgatg
     6781 gcggggccga tttttgtcgt catcgccagc gtcgctatgt tttttgtcgc acagcagcac
     6841 gcgacagatt tggttacgga cgattattat aaagacggca aacatatcga catccagctt
     6901 catcgggatg aagaagccgt cagacggcat atcggggtgc aggttctcat ttcccccgat
     6961 atgaatgcgg caaaagtgtt tgtcggcggc gagtttgacg gcaaacagcc tttgaacctg
     7021 ctgctgatgc acccgacccg caaggcggac gatcaaaccg tcgccctcaa gcccgtcggc
     7081 agcgcgcaga acggcagggc ggaatatgag gcggtgttca aaaccctttc gccgaccaac
     7141 cactggtatg tgcgcgtgga ggacgcggca ggcgtgtggc gcgtcgagaa caaatggatt
     7201 accagccaag gcaatgcggt ggatctgacc ccgatggata aacttttcaa taatgccgga
     7261 agcaaataaa aaagccgtgt tttcattgca ttggtttgcc agatgcaatg tcgggcaggc
     7321 attgtttgat tattcggcgt gatggtctga tttatcggac gaaaataaat gtatctcatc
     7381 ccgtttattt tttaacacta ttccagaacg cagcctgaaa aatgccgtct gaagggcttc
     7441 agacggcatt tgtgttgtat gcccgacaca atgcggaagg cgttttgttt acataaaaac
     7501 gtttttattt ctctccgttt tttcgacact attccgaaac gcagcctgaa aaatgccgtc
     7561 tgaaagccct tcagacggca ttttgtttgc aaatcaaatc ctacctgatg tcagcgtccg
     7621 agcgttgcaa caggttcgct ccccgtcagc agatattgta tcgtctcgcg gacggtgcgg
     7681 atggcattac cgaagggcag cgggtcttta cctctgaaga acaggccttt atctacttct
     7741 ccacgaaatg cggcagcaag ctggatatca atacagaatt gccctgcttt ggaaagcccg
     7801 tcgcgcaggc cgcagctagt caggcagttt aaaccttggg tacagcggcg cgggtcggct
     7861 ttggcgtttg tctgaagttt gctttcacgc ttgatgtagc tgtctaggaa tttggtgcgg
     7921 acaccgcgcg ccggcaaacc ggcaacagac ataaattcga ctactttttc agtttccgca
     7981 ccggcgagcg tttttttgaa gttaaggtgt gcatctcctt cttcggtaac ggcaaaagcc
     8041 gtaccgattt gaacggcgga tgctccccag ttctttaggg cggttttgac tttttcaaaa
     8101 tttgccatgc ctcccgcaag aataagcggg attttttcgc tttccagccc taaacttttg
     8161 aaaacttcaa acgtttcctc aatcacgcgt ttgaagtcga acttggcatc gtttacgcct
     8221 tcaacggttg atgcacccaa atgtccggcc gcgtgggcag gatgttcgac tacaatcgca
     8281 tcgggcaata tgcctttttt catccaacgt ttcaagacga tattaatacc gcgcgattcg
     8341 gacagaatcg gcagcagcgc gacatattta tgatagccct cggtcatttc cggcaggtct
     8401 aaaggcagac cggcacccat tacaaccgca tccgcccctg attcgcaagc ctggcggaca
     8461 tatgcggcgt ggtctttgac cgccttcatc acgttgaccg caatcagccc ttttccctct
     8521 gaagcacttt tggctttttg gatttccctg tccaatgcgg tacagttcaa agacgtatat
     8581 ttctcttcac tcggattgat ttgggattcg gcgagtaggt cttcgtgaag gtggcgcaaa
     8641 tccacactgg caatcgttcc gataccgttt tcacgtgcca ccgcgctgga taaacccgat
     8701 gcggaaacac cgacccccat accgccttgc acgatggggg taagggattt tccacgaata
     8761 accaaagggt caaaaatatt ttgcatcagt ttctccgagt atacgaatca gtcaggctca
     8821 tgaaaaatgg ttctaactgt tttagaacta ttgctcaaat ttggtattat actctaaata
     8881 tcgcggcggt aaacaagaaa gcagccggag cttcgggcat attctgttac gcctgtttca
     8941 atcgggagag aaaatattat agtgaattaa caaaaatcag gacaaggcga cgaagccgca
     9001 gacagtacaa atagtacgga aaggcgaggc aacgccgtac tggtttaaag ttaatccact
     9061 ataaatttga tgatggcata aaaaagccct agtcagttgc tgtcaaaggg gattgttaag
     9121 aaaagtaatg ccacgttgat ggggtgcaat atatcaggcg tttcaatcgg gtaaaatgtt
     9181 ggacggacac cgcatccggt tacgtgatat cggtttgcac ggcaaaggtt tgaatatgat
     9241 tcgattacgt ctgagagtct gatgaagggg gtaggtaaag atatggtaat gaattgccga
     9301 ggcaataaaa atccccgagg gattatttcg ggggatttgg aatttggcac gcccacgggg
     9361 aatcgaaccc cggttaccgc cgtgaaaggg cgatgtccta accgctagac gatgggcgca
     9421 tattgtattt tcttactggc gcacccggag cgattcgaac gcccgaccct ctggttcgta
     9481 gccagatact ctatccaact gagctacggg tgcactgcaa gaaagatttg aattttaggg
     9541 taatcatcgg attctgtcaa ttgttttgtt ggatgaaatg ccttaaaagt gtaaaatatc
     9601 ggtttgttgt ttgaatttaa agagaataaa atgattgttg cttcccgctg gcccttgctg
     9661 gaaaaggtat ttttacggtt tggaatgcct gttgccgtgg ttgatttgga atcgacgggc
     9721 ggcaatctgt atgaagacag ggtaaccgaa gtggctttgg tcaagtttga gcagggaagg
     9781 gtggtgaggc atgagtggtt ggttaatcct caaaaaccga ttccgcagtt tgttgcgggg
     9841 ctgacgggga tttcagacgg catggttgcc gacgcacctg tttttgcaga gattgccggc
     9901 gagttgtttt cggtattgaa gggttgtgtg ctggttgcac ataacagccg tttcgactat
     9961 acgtttttaa agcatgagtt tcatcgtgcg ggtatcggat tttcatcgcc tgctttgtgc
    10021 agtgtgcaac tgtcccggtg tctgtatccg caattttaca agcacagcct ggacagtatc
    10081 atcgaaaggt tggggattgt tgtggaagac aggcatcgtg cgatggcgga tgtatcggca
    10141 ttgtgcgatt atttggaata cagtctgtcg gaacacgggg tcgaggcatg gatcaggcag
    10201 tgtttccgtt tgatgaatcc gaaaccgctg cctgccgcgc tgcccgaacg gttgagggaa
    10261 cagttgtacg gtttgcctga cagtatgggg gtgctggctt gtttcgacgg aggagggaaa
    10321 gtaaattaca tcggtacgtt tgaacgggta tatagcgagg tttcggcttt attggattcc
    10381 ggaaaagcct cgtttgattg gtgcaatacg gaggcagtcc gtttttttcc cgcattgggc
    10441 aggctgcatg catataagat taaagcggaa ttggtcaggc gttatcattc gggttgttat
    10501 gtgtctgcca aaaatctgct gaaaacattt acgaccgtca ggtttgaaaa aggttcagac
    10561 ggcatgttga atgcgaaaac aacggctttg aaaaacggtg tgacggataa tccgcctacc
    10621 ggattatttg ccaataaaaa ggcagcgaga cgggctttgt cgtcgtgggc ggaaacatac
    10681 ggattgtgtc ctgccgcagc cggtatcctg tcggacggtt atacagagga tgagccttgt
    10741 cccgtatatg tttcaggccg atgcgataag gcgtgcggcc gttctgacga acaggttttg
    10801 gcgtttgcac acaagttgcc tattttggat tggggaaaaa tgcatgaggt agaaattacc
    10861 gaaactgatc ctttaacggg ggaaaaagtt gttctgcatg gaatgggcgg cgcattggaa
    10921 atgggtgacg ggctttggta tttcgataaa gatttaccgg atgcgtttaa ggcgaagttt
    10981 aaaacggaca ggaaaaatat taaggaaatc ggttaaatcg ataccggttg atgaaagccg
    11041 gtaagtatgt aaacagccgt tcgtattgat tgcctaatcg gtttgggttg gaatgtgttg
    11101 ccgtttgcag gtaatgtgtc cgaagatgcc gtctgaattt tttcagacgg catttttgcc
    11161 gacgcggttt tcgtgccgtg tcggtttgct cttccaaccg aaggcatcgg acaagcaggg
    11221 tggtttttag aagccgtttt ccatcatgat ttgaccagga atgcggttgc ggtgcatggc
    11281 gtaacccatg tcaagcagcg tttggaaggt gtctttgact atttccggat tgccgcaaat
    11341 cataaaccgt gtggattcgg gggtaaactt ggtatgcagc gcctgttcga tgctgttgtt
    11401 ttttaagagt tccggaatgc gttttccgcc taagcccgag gggttggcgg cacgggtggt
    11461 aacagggacg aaacggaacg agtgtccgta ttcgcctacc aggggatgtt cggccaatgc
    11521 ggcgagccgg tcgttgaaaa tcaattcttc gggaaaagat acggaatgta tcaggttgac
    11581 ggtatcgaaa cgctgccgga tttcgggttg ttcgagaatg gaaaggaagg gggcgatgcc
    11641 ggagccggtg cagagcatca ccaaatcctt gccgtcgggg aagcgttcgg gcaggaggaa
    11701 gccggtggca tttttatcga gcaggatggt atcgccctgt tgcattttgg cgaaacgggc
    11761 cgacatgggg ccgtcttgga tgagtacggc aaaatattcg agcgtgtcgg catattctgc
    11821 ggaaacgatg gagtaggcac gccaaataaa gccttcccct tcgtagaaac cgagtcggga
    11881 gaactgtccg gctttaaaac ggtaggattc gggacggctg atggcgaaag tgatgagttt
    11941 cggcgtgtgg tgtttgaccc acaaaatctt ttcttcagtg aattttgctt cgggcgaggc
    12001 tgccatgttg ttgtccttga gtgtgtttgt cgggattata gccaatttgg gtgttttttt
    12061 ccgcattgac ggtctgagac ctttgcaaaa ttcctttccc tcccgacagc cgaaacccaa
    12121 acacaggttt tcggctgttt tagccccaaa tacctcctaa ttttacccaa atatcccctt
    12181 aatcctcccc ggatacccga taatcaggca tccggac
//
LOCUS       DAXHNP010000050        12077 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.050, whole genome shotgun sequence.
ACCESSION   DAXHNP010000050 DAXHNP010000000
VERSION     DAXHNP010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12077
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.050"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(333..1109)
                     /gene="lpxA"
                     /locus_tag="ACFM5C_000994"
     CDS             complement(333..1109)
                     /gene="lpxA"
                     /locus_tag="ACFM5C_000994"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFC6068721.1"
                     /translation="MTLIHPTAVIDPKAELDSGVKVGAYTVIGPNVQIGANTEIGPHA
                     VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
                     GETRIGDDNWIMAYCHLAHDCVIGNHTIFANNASLAGHVTIGDYVVLGGYTLVFQFCH
                     IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
                     YHRGIPFEEAKADILRRAETQAELAVFRDFFAQSARGIIR"
     gene            complement(1196..1645)
                     /gene="fabZ"
                     /locus_tag="ACFM5C_000995"
     CDS             complement(1196..1645)
                     /gene="fabZ"
                     /locus_tag="ACFM5C_000995"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFC6068722.1"
                     /translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVT
                     INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
                     QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAKRVV"
     gene            complement(1679..2725)
                     /gene="lpxD"
                     /locus_tag="ACFM5C_000996"
     CDS             complement(1679..2725)
                     /gene="lpxD"
                     /locus_tag="ACFM5C_000996"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFC6068723.1"
                     /translation="MIPATYTLSQITARLGGEWRGEDISVTAVRPLADAQAEHISFLA
                     NPKYKAEVHDSSAGAVIVSAKAADGFEGRNLIVADDPYLYFAKVARLFSPVVKARGGI
                     HPTAVVEPGATVPASCEIGANVYIGANTVLGEGCRILANAVVQHDCKLGDEVVLHPNA
                     VVYYGCTLGRRVEIHSGAVIGADGFGLAFAGDSWFKIPQTGAVTLGNDVEIGSNTNID
                     RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
                     GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
                     TLEQQLSDAGQDSK"
     gene            complement(2758..3258)
                     /locus_tag="ACFM5C_000997"
     CDS             complement(2758..3258)
                     /locus_tag="ACFM5C_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HFC6068724.1"
                     /translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
                     RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
                     KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
                     KEMNAR"
     gene            complement(3324..5717)
                     /gene="bamA"
                     /locus_tag="ACFM5C_000998"
     CDS             complement(3324..5717)
                     /gene="bamA"
                     /locus_tag="ACFM5C_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFC6068725.1"
                     /translation="MKLKQIASALMVLGISPLALADFTIQDIRVEGLQRTEPSTVFNY
                     LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
                     MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
                     RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
                     AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDT
                     NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
                     VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
                     GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
                     GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
                     TTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDGTDGSFK
                     GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
                     FTLMLGGEVGIAGGYGKTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYG
                     GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
                     AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
     gene            complement(5774..7114)
                     /gene="rseP"
                     /locus_tag="ACFM5C_000999"
     CDS             complement(5774..7114)
                     /gene="rseP"
                     /locus_tag="ACFM5C_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFC6068726.1"
                     /translation="MHTLLAFIFAILILVSLHEFGHYAVARLCGVKVVRFSVGFGKPF
                     FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
                     NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGTPVADWGSA
                     QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
                     GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGKKITLTYERAGQTHT
                     ADIRPDTVEQPDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVIRAFGMGWEKTVSHSWT
                     TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
                     PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
     gene            complement(7149..8384)
                     /gene="ispC"
                     /locus_tag="ACFM5C_001000"
     CDS             complement(7149..8384)
                     /gene="ispC"
                     /locus_tag="ACFM5C_001000"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFC6068727.1"
                     /translation="MPSENASDGIRYKVIPIMTPQVLTILGSTGSIGESTLDVVSRHP
                     EKFRVFALAGHKQVEKLAVQCRTFRPEYAVVADAEHAARLEALLKGDGTATQVLHGAQ
                     ALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARA
                     NGAAVLPVDSEHNAIFQVLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDSITPA
                     QAVKHPNWSMGRKISVDSATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRY
                     RDGSVLAQLGNPDMRTPIAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLKL
                     AYEAMNAGGAAPCVLNAANEAAVAAFLDGQIKFTDIAKTVAHCLSQDFSDGIGDIGGL
                     LAQDARTRAQARAFIGTLR"
     gene            complement(8389..9186)
                     /locus_tag="ACFM5C_001001"
     CDS             complement(8389..9186)
                     /locus_tag="ACFM5C_001001"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004605 - phosphatidate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFC6068728.1"
                     /translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
                     RMSGLCKIKTNHYLAATLVFGVVAYAGGWMLPNLVWYVVLAFWLAIMPLWLRFKWRLN
                     GGWQVYAVGWLLVMPFWFALVSLRPHPDDALPLLAVIGLVWVADVCAYFSGKAFGKHK
                     IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
                     LLESWLKRAAGIKDSSNLLPGHGGVFDRTDSLIAVISVYAAMMSVLN"
     gene            complement(9189..9935)
                     /locus_tag="ACFM5C_001002"
     CDS             complement(9189..9935)
                     /locus_tag="ACFM5C_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HFC6068729.1"
                     /translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
                     DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
                     RLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGV
                     SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGK
                     ALDDAVASFQKRERRFGRTSEQLPIEQQRN"
     gene            complement(9991..10548)
                     /gene="frr"
                     /locus_tag="ACFM5C_001003"
     CDS             complement(9991..10548)
                     /gene="frr"
                     /locus_tag="ACFM5C_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFC6068730.1"
                     /translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
                     WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
                     PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
                     QKLTDKYITEADKLLTAKEEDLMAI"
     gene            complement(10729..11856)
                     /locus_tag="ACFM5C_001004"
     CDS             complement(10729..11856)
                     /locus_tag="ACFM5C_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HFC6068731.1"
                     /translation="MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARL
                     LHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGN
                     LLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWFDSGLMRAMNVLIG
                     AAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTRERLEQNMVKMRQI
                     NARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSE
                     IRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLS
                     TNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
     gene            complement(11932..12007)
                     /locus_tag="ACFM5C_001005"
     tRNA            complement(11932..12007)
                     /locus_tag="ACFM5C_001005"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11972..11974),aa:Thr,seq:cgt)
BASE COUNT         2267 a         3088 c         3769 g         2953 t
ORIGIN      
        1 ttttaaaaca ccacttttgt agtgtccagt aatttcagca cagaatattc aataagacaa
       61 tatgttcttt tgaaaaatac ttttggtttt ttcgccgaaa gcaggtcggt tcaagctgcg
      121 gaaattgttt gcaattcttt aaaagcagcg gcggaggtca caatgaaatg tccgaatggg
      181 gatgtggtcg gcggcagaaa tcatcaatgc tgccgactgc catacttctg aaatctacaa
      241 aatgatgcat cgatcaaaca atataccgct ttaaaaaaac cgatgccgtc tgaaacgctt
      301 tcggggtttc agacggcatc aaaagggtac ggtcagcgga tgatgccgcg cgccgattgt
      361 gcgaaaaagt ctcggaatac ggcaagctcg gcttgggttt cggcgcggcg gaggatgtct
      421 gccttggcct cttcaaacgg aatgccgcga tggtagaggg ttttgtacac gtctttgacg
      481 gcggaaatct gttctgcggt aaaaccgttg cggcgcatgc cttcgctgtt gagccccgcc
      541 ggttcggcgc ggtagcccga tgccataaag tagggcggta cgtctttgtg tacgcctgcg
      601 gcgaaggcgg tcatggcgta gtcgccgatg tggcagaatt ggaaaaccag cgtgtagccg
      661 cccaaaacga cgtagtcgcc gatggtaacg tgtccggcaa gcgaggcgtt gttggcgaag
      721 atggtgtggt tgccgatgac gcagtcgtgc gcgaggtggc agtacgccat aatccagttg
      781 tcgtcgccga tacgggtttc gccgatgccg gttaccgtgc ctaaattaaa ggtggtgaat
      841 tcgcggatgg tgttgccgtt gccgataatc agcttggtcg gctcgtcgcg gtattttttg
      901 tcctgcggga tttcgccgag gctggcaaat tggaaaatgc ggttgttttc gccgatgctg
      961 gtgtggccgt tgatgacggc gtgcggaccg atttcggtat tcgcgccgat ttggacgttg
     1021 gggccgataa cggtgtacgc gccgactttg acgccggagt cgagttcggc tttggggtcg
     1081 atgacggcgg tcgggtggat gagggtcatg tttttccttt cctgtcgtgt tgccgcgaag
     1141 atgcgcgacg gcaacaggtt gtctgaaaac tttcagacga cctttttctg aacactcaaa
     1201 ctacgcgttt ggcacacatg atgatggctt cgacggcaac ttgcccgtcc actttggcga
     1261 cggcgttgaa tttgccgatg ccgcgccgac tggtcagcag ctcgacttca aagacgagtt
     1321 ggtcgccggg gatgacttgg cgtttgaaac gggcttcgtc tatgccggcg aagaagaaga
     1381 attcgttttc tttgcgcccg ccttcgctca aaatcgccaa cgtgccgcac gcctgcgcca
     1441 tcgcttcgat gatgagtacg ccgggcatca cgggcaggtc gggaaaatgg ccttggaact
     1501 ggggttcgtt tatggtgacg tttttaatcg cggtcagggt tttcatcggc tcgaaggcgg
     1561 tgatgcggtc gagctggaga aacggatagc ggtgggggat gagtttttgg atgtctttgg
     1621 cttcgatggg gagttgtacg tccatgtctg tcgtattcct tgaataaagt cggtttggtt
     1681 atttgctgtc ttgaccggca tctgaaagct gctgctccag tgttttgagc cgtttgttca
     1741 tttcgcttaa gcggtggatg taaacagcgt tgcgcgccca ttctttatgg gtggacatcg
     1801 ggaagatgcc ggcgaggtgt ttgccgcttt cggtaatgct gtgggtgacg gacgtgccgc
     1861 cgccgatggt ggttttgtcg gcgatttcga tgtgtccgac cgtaccgacg ccgccgccga
     1921 tgatgcagta gctgcctatg gttacgctgc ctgagatgcc ggttttggcg gcgatgacgg
     1981 tgtgcgaacc gattttgcag ttgtgtccga tttggacttg gttgtcgatt ttggtgccgt
     2041 tgccgacggt ggtgtcgctc atcgcgccgc ggtcgatgtt ggtgttcgag ccgatttcta
     2101 cgtcgttgcc cagcgttacc gcgccggttt gcgggatttt aaaccatgaa tcgccggcaa
     2161 aagcgagtcc gaaaccgtcc gcgccgatga ccgcgccgct gtggatttcg acgcgtctgc
     2221 ccagtgtgca gccgtaataa acgacggcgt tgggatgcag gacgacttcg tcgcccagtt
     2281 tgcaatcgtg ttggacgacg gcgtttgcca agatgcggca gccttcgccg agcacggtgt
     2341 ttgcgccgat gtagacgttc gcgccgattt cgcagctggc gggaacggtc gcgcccggtt
     2401 cgacgacggc ggtcggatgg atgccgccgc gcgctttgac gacgggtgaa aacaggcggg
     2461 cgactttggc gaaatagaga taggggtcgt cggcgacaat caggttgcgc ccttcaaatc
     2521 cgtctgccgc tttggcggaa acgatgaccg cgcccgcgct gctgtcgtgg acttcggctt
     2581 tgtatttcgg attggcaagg aagctgatgt gttccgcctg cgcgtctgcg agcgggcgca
     2641 cggcggtaac ggaaatgtcc tcgccgcgcc attcgccgcc gagccgcgcg gtgatttggg
     2701 acagggtgta ggtggccgga atcatggttt tcctgttcgg tatgccgtct gaaagggtca
     2761 gcgggcgttc atttctttaa tgacgctgtc ggtaacgtcg tattgggtgt tgacgtaaat
     2821 cacgttctgc aaaatgacat cgtaaccttc ctgtttggcg attttgacga tgacgcggtt
     2881 ggcgttttgc tggagggagg caaactcttc gttgcggcgg aggttgtagt cttcttcaaa
     2941 ctgcgcctgt tttttgcgga acgctgcgac cagcccgcgc catttttctt cggcttgcgc
     3001 cttttttgcg tttctgagtt tgccttcggc aagctgcctt tccaaatcca gaccttcgcg
     3061 ttgcagtttt tgcaattcgt cctgacgggc ggaaaattcg ctgtccagcg ttttttgaat
     3121 cttgcgcgcc tgcttggatt cgaggtagat gcgctcggtg ttgataaagc cgattttttg
     3181 gaaggtgtcg gcgtgcgcgc ctgcggtgca gcacaaaccg atcagagccg cggcaaacgc
     3241 gcgggtcaaa cgggtcatgg taaaactcct tcgaatgttg ccgcgaaatg ccgtctgaag
     3301 ggcttcagac ggcatttgcg ggattagaac gtcgtgccga gttggaattg gaagcgttgg
     3361 atttcgtctt ccggtttttt cttcagcggg taggcgtagc tgaatttcat cgggcctaaa
     3421 ggcgagagcc aggtaaccgc gccgccggcg gaatagcgca attcgttggt aaaggtggat
     3481 ttatgggtat tgccggcgcc gtaaatgttt tgaaccctgc cgccggtcgc ggaactgctg
     3541 ttgtcgtcgt aggttttgcc gtcccacacg ctgcctgcgt cggcaaacag gctcaggcgg
     3601 acggtgcgcg cgtctttcgc gccgggcatc gggaagagca gctcggcgga gacgttggct
     3661 tttttgttgc cgccgtagct gattttttcg ccgtattcgt catacacttt cggaccgagc
     3721 gtgccgcttt cgtatccgcg caccgaaccc aggccgccgc cgtagaagtt ttcaaagaag
     3781 gggatttctt tggttttgcc gtagccgccc gcaatgccga cttcgccgcc cagcatcagt
     3841 gtgaaggttt tgcttaaggg gaagaaccag gtttggttgt gggtggcgga gtagtattgc
     3901 agtttgctgc cgggcagggc gatttcggcg ttcacgcccg tcaggtagcc gcgcgtcggc
     3961 cataacgcgc tgtcggtttt gttgcgcccc cagccgacgg tacctttgta cagccagcct
     4021 ttgaagctgc cgtctgtgcc gtcggttttg ccgtatttct tgataaagtc ggcatagtgt
     4081 ttgggcgctt tgttgtaggt gttgacggtc aggtgttctg ccaccaaacc gaaattcacg
     4141 cggtcgtatt cggtaacagg cacgctcatg cggatgcctg cgcctgccgt ggtggtttta
     4201 tattgtttga tgctggtcga tgctttgcgc gggtcgaagg cttttccgta aacatcgtag
     4261 cccaggctga ccccgtctgc cgtgaagtac gggtcggtaa acgacagcga gccgttgagc
     4321 gtggttttgc ttcgtgaggc gcgcagggcg gccgacttgc ccgtaccgaa caggttgtct
     4381 tgggaaacgc ctgcggacat gaccaggccg gtatcctgta cccagcccgc gctcaagtcg
     4441 agcgagccgg tggaacgttc ggtcaggctc atgttcaaat cgactttgtc gggtgtgccg
     4501 gcaagcggga cggcatcaaa ctgtacgttg tcgaagtagc ccaaaagctc gacgcgctct
     4561 ttggagcgtt gcagcttgga ggtgtcgtaa ggcgcggatt ccatttggcg caattcgcgg
     4621 cgcacgactt cgtcgcgggt tttgttgttg ccggtgatgt ggatttcgtt gacgtagatt
     4681 ttccggcccg gttcgatgtg caggacgaaa tcgacggttt tggtttcggc gtttggcagc
     4741 ggctgtacgc tgatttcgct gtatgcgtag cctgccgagc ccatgcggtt ctgaatctca
     4801 cccaaaacgg cggtcatctg ctggcgttcg taccatttgc cgggcttcat ggtcagcagc
     4861 ttttccagtt cggctttggg gacttcgttg gtgtcgcctt cgatggagac tttgccccaa
     4921 cggaaacgtt cgccttcgtg gacggtgatt ttgatggtct gcttggtttt gtcttcgttg
     4981 gtttggatgt cggtatcgag gatgcggaaa tcgaagtagc cgttgttctg gtagaagtcg
     5041 gttacttttt ccatgtcttg ggcaaatttc tgctcgttga attggttgct tcgtgtcagc
     5101 catgtccaaa tgccgccttc ggtcagcgac atctgccgca tcagtttgcg gtcggaatag
     5161 acttggttgc cttcaaattc gatgtcggtg attttggcgg atttgccctc gtcaatcgtg
     5221 atgtcgatgt cgacgcggtt gcgggcgagt ttggttactt tgggcgtgat ttggatattg
     5281 agtttgccgc gcccgaggta ttcttctttc aggccggcga ctgcctgatt gagtgtcgcc
     5341 tgattaaagt attgcgactg cgccagcccg aacgattcga ggtttttctt aatggcgtcg
     5401 ttttgcagca tttttgcgcc ggtgatgttg agcgagccga tggtggggcg ttcgataacg
     5461 gtcagcagga gctgcccgtc cgcagtttcg acgcgtacgt cgtcaaagaa accggtggcg
     5521 tacaggcttt tgatgatggc actgccgtgt gtgtcgttgt aggtgtcgcc gactttgacg
     5581 ggcaggtagt tgaatacggt actcggctcg gtacgctgca agccttcgac gcggatgtct
     5641 tggatggtga agtcggcaag tgccaaaggc gatatgccca agaccatcag tgcggaagca
     5701 atctgtttca gtttcattgt cagttccttg tggtgcggaa tgcggtttca gacggcattc
     5761 cgaaacgtaa aatctaaccg agcagccggg taacgtcgtt gaagaaggcg accgccatca
     5821 tcagcatcat gagggcaagc ccgaagcgca aaccgatgtt ttggacgcgt tcgcccaaag
     5881 gtttgccgcg tatccattcg gcagtataaa acacgaggtg gccgccgtcc aaaacgggga
     5941 cgggcagcag gttcagcacg ccgaggctga tgctgaccag tgccaaaaat tccaaataac
     6001 tttgcaagcc gagttcggcg gactgtccgg caatgtcggc aatggtcagc ggcccggaaa
     6061 tatggctgac ggaggcgttg ccgctgatta gtttgccgaa aaatttgagg gttgtccacg
     6121 agtgggaaac ggttttttcc cagcccatgc cgaatgcgcg gataacagac ggacggtagc
     6181 tgcggcggat ttgcgcgtcc cacgccctgt ccggctgcgg acggaggccg acgcgcccga
     6241 tcagggtgtg gtcgggctgt tcgacagtat cggggcggat gtcggcggta tgggtttgtc
     6301 cggcgcgttc gtaggtcagg gtgatttttt tgccggggct ttggcgggtc aggtttgccc
     6361 attcctgcca tgaggcgatg ggtttgccgt cggcggcagt cagcctgtcg cccggtttca
     6421 ggcctgcttt ttcggcgggg ctgccttttt ccacgccgcc ggcaacggtt gtgattttaa
     6481 agggcatcag tccgatgtag ccttggtttt ttgcgatttt accggcttcc ggcgtgcctg
     6541 cggcatcgat ggtgcggacg gtttgcgcgc ccgatgccgt ctgaacgccg acggcgactt
     6601 tgccggcttc gaggttgagg acgatttcgg tttgcgcgct gccccaatct gcaacgggtg
     6661 tgccgttgac ggattgtatt ttgtcgccgc tttggaagcc ggcgcgggcg gcaatggtgt
     6721 cgggttcgac tgtgccgacg taggggcgca gttcggttac gccgaaggaa aagctcagtc
     6781 cgtacagcaa aaccgccagt gcgaggttgg tcagtgggcc ggcggcgacg atggcgatgc
     6841 gcttggcggg gtgttgtttg tcaaaagcgt agggtaaatc ggcttctgat acttcgcctt
     6901 cgcgcgtatc gaccattttg acgtagccgc ccaacggaat cggggcgagg caccattcgg
     6961 tgtcgccgcg ctttcgggtg aaaaacggtt tgccgaagcc gacggaaaag cgtacgactt
     7021 tgacgccgca caatctggca acggcgtagt gtccgaactc gtgcaggctg accaaaatca
     7081 ggatggcgaa gataaaagct agaagggtgt gcaaatggtt ttcctttgat aacggtgttc
     7141 agacggcatc agcgcagtgt gccgataaat gcccgcgctt gtgcgcgtgt ccgggcatct
     7201 tgcgccaaga gcccccctat gtcgcctatg ccgtctgaaa agtcttgtga aagacaatgg
     7261 gcgacggttt tggcaatgtc ggtaaactta atctgtccgt ccaaaaaggc ggcgacggcg
     7321 gcttcgttgg cggcgttcaa tacgcagggc gcggctccgc ctgcgttcat ggcttcatag
     7381 gcgagcttca ggcaggggaa gcggtcaaag tcgggctttt ggaaggtcag cgcggacaat
     7441 gcgtcgaaat ccaggtcgcc gacacccgaa tcgatgcgct cgggcaaacc caaacaataa
     7501 gcaatgggcg tacgcatatc gggattgccc agttgcgcca acacggagcc gtcgcggtag
     7561 cgcaccatgc tgtgtatcac ggattgcgga tggatgacga cttcgagctt gtcaggcgga
     7621 cagttgaaca gccaatgcgc ttcaatcagc tccaaacctt tgttcatcat ggtggcggaa
     7681 tcgacggaga ttttgcgccc catgctccaa ttggggtgtt tgaccgcttg ggcgggcgta
     7741 atgctgtcga acgtgtttaa atcggcggtc agaaacgggc cgccggaagc ggtcaggata
     7801 atcgaagcga tgccgtgttc gttcagacgg ccggcgtaat cgcgcggcaa aacttggaaa
     7861 atggcgttgt gttcgctgtc gacgggcagc actgccgcgc cgtttgcacg ggcggtttcc
     7921 ataaacaacg cgccggaaac caccagcgtc tctttgttcg ccagataaat ggttttgcct
     7981 ttttgcgccg ctgcgagcgc ggaaggcagc cccaccgccc cgacgatggc gcacatgaca
     8041 ccgctgactt cgtcggcaga ggcaacgtca accaatgcct gcgcgccgtg taaaacctgc
     8101 gtcgccgtgc cgtcgccttt caacaaagct tcaagccggg cggcgtgttc ggcatcggca
     8161 acgacggcat attcggggcg gaacgtccgg cattgcaccg ccagtttctc gacctgctta
     8221 tgccctgcca gcgcgaatac gcggaatttt tcggggtggc gggagacaac gtccagcgtg
     8281 ctttcgccta tgctgccggt actgcctaat atggtcagga cttgtggtgt cataatgggg
     8341 ataactttat accggatgcc gtctgaagcg ttttcagacg gcatagaatc aatttaaaac
     8401 cgacatcatc gccgcataga cgctgataac ggcaatcagg ctgtcggtac ggtcgaacac
     8461 gccgccgtgt ccgggcagca ggttgctgct gtctttgatg cctgccgcgc gcttgagcca
     8521 gctttccaaa aggtcgccgc atacgctgac aacggtcaac accaaaccga ttaacacggt
     8581 atcgaaccag cctgtatcga atgccagcca gccggcactt cgtacggcgg tcatgtacac
     8641 ggccacgcaa accgcgccgc cgattgcgcc ttcccagctt ttgccagggc tgattgccgg
     8701 tgcgattttg tgtttaccga acgccttgcc gctgaaatac gcgcaaacgt cggcaaccca
     8761 gaccagacct atcacggcga gcagcggcag ggcatcatcg ggatgcgggc gcagggatac
     8821 gagcgcgaac caaaacggca tgaccagaag ccaaccgacg gcataaacct gccaaccgcc
     8881 gttgagcctc catttgaatc tcaaccataa aggcatgatg gcgagccaaa atgccaaaac
     8941 aacataccaa accaaattag gcagcatcca gccgcccgca taggcaacca cgccgaaaac
     9001 caaggttgcg gcgaggtaat ggttggtttt aattttgcac aaaccgctca tacgggcata
     9061 ttcccacaag gcaatcaggg caatcagtcc gcaaaatgca gcccacaacc attgcggcgc
     9121 gtaaaacagc atgcccagca tcagcggcag cagccacata gcagttatca cccgttgttt
     9181 cagcatattc agttcctttg ctgttcgata ggcagttgct cggaggtgcg tccgaaccgc
     9241 cgttcgcgtt tttggaacga agcgacggca tcgtccaaag ccttgccgtc aaaatcgggc
     9301 cacaaaatat cggtgaaata cagttctgca tatgccatct gccagagcag gaaattgctg
     9361 atgcgcgttt cgccgccggt gcggatgaac aaatccggtt ccggtgcatc gcccagcatc
     9421 aagtgtttcg ccagcgtgtc ttccgtaatc tcggatacgc cttcggcaat cagtttgttt
     9481 gccgcctgca aaatatccca acgtccgccg taatcggcgg caatgctcag ggtcaggccg
     9541 gtattgtttg ccgtcaaggc ttccgcctct tcgatgcctt gcagaatctg ccgattaaag
     9601 cgttcgcggc tgcccagtat ttttaggcgc atattgtttt cgtgcagacg gcgtacctgt
     9661 ttttgcaaag cctgtaaaaa cagccccatc aggaacgaaa cttcgtcttc ggggcggcgc
     9721 cagttttcgg ttgaaaaggc aaacacggtc agatattgca cacccagttt ggcgcaatgc
     9781 ttcaccatat tttccaatgc gtccaaaccg cgtttgtgtc ccattatgcg cgggaggaaa
     9841 cgttttttcg cccaacggcc gttgccgtcc ataatcacgg cgatatgctt gggaatggcg
     9901 gtgtgttcca aaacggcctg cgtgctgctt ttcatgtctg cctttcgcgg ttcggcattc
     9961 aaatgccgtc tgaacgccga accgtgcagg ttaaattgcc atcaaatctt cttctttggc
    10021 agtcaggagt ttgtcggctt cggtaatgta tttgtcggtc agtttttgaa ccgcttcttc
    10081 gccgcgacgt gcctcgtctt cggaaatttc tttgtctttg aggagttttt tgatgtggtc
    10141 gttggcatcg cggcgcacgt tgcggataga gacgcggcct tcttccgctt cgccgcgtac
    10201 gactttaatc aggtctttgc ggcgttcctc ggtcagcatg ggcatcggca cgcggatcag
    10261 gtcgccgaca gctgccgggt tcagccccaa gtttgaatcg cggatggctt tctcgacttt
    10321 ggccgccata ttgccctcaa acggtttcac gccgatggtg cgcgcgtcca gaagcgttac
    10381 gttggcaact tggctgacgg ggaccatgct gccccagtat tcgacttcca cttggtcgag
    10441 caggccggta tgcgcgcggc cggtacgcac tttcgccaga ttttctttca gtacttcgac
    10501 cgaacgctgc attttgcctt cggctgtttt ttgaatatcg ttgatcatat tgttctttcg
    10561 gtgggataag gtgggcgggc agccgtctga aacgcgcttc aaacctttca gacggcatga
    10621 aaactgttaa ctgcgaatag taccgttatt cgggcatgac gacaaggcag gaggattgga
    10681 gatgccgtct gaagcggcag gcgtttcaga cggcatcgtg tccgaccgtc agccgtgttc
    10741 ccgtgtttca agcaggcttt ggcgcaggtg ttggcgttcg tgggcatcca gccatttgcg
    10801 gcgggtgcgt tgcagcagga tgacgagggc ggaaatttcc tgacgcatat tggtgctgag
    10861 ccagaggaag ccctgccatt ggtagtggag gtgttcggcg agggcttcca gttcggggtt
    10921 gatggcggtg tcgatgcgga tgcggcgggc gtgtctgccg ttgataaggg cgacggtttg
    10981 ttgcaggtcg gtttggagca gtgtgaagtg gcggtcgagc agccggattt cgctgccgtt
    11041 gagtttggga gattgcagct tggcggcagt ggtcaggagc agctcggtgg tgttgacaat
    11101 tttacggtgg gcgtgctgca tggcttccat catggcgggg ctgatgcggc tttcgcccga
    11161 tgtggcggcg aggtggctgc ggcttttgac catgcgtgcg ttgatttggc gcattttaac
    11221 catattctgc tccaaacgtt cgcgcgtcat acgcctgccg ttgctgattt cggcaatcat
    11281 tttgctgcag tcggtcaggt tgtcggcaag catgaaacgc cacatcagtg tggatttcag
    11341 cggcagcagt ttggcggcgg caatggcgat ggccgcgccg atgaggacgt tcatggcgcg
    11401 catcaggccg ctgtcgaacc attcgctgcc gttgtcgccg atgagcatgc acatcgtcag
    11461 ccccgccagc atagggacgt agccgttttt gccgaccgcc gcccagccgg ccagtgcgct
    11521 tgccgtgccg acggtgaggt agaagaggag gttgccgtgg aaataatgct ggttcagcca
    11581 taaaacgccc aaacccgcgc ccagcccgat gaccgtgccg agcatacgtt ccaccgcctt
    11641 ggagtaaatc gccccttgaa actggagcat gccgaggacg acgaagacgg tcatccctat
    11701 ccactcgccg tgttggaggt ggagcagccg ggcggaggcg gtggcgaaca ggacggcccc
    11761 gccgagccgg acggcgtgga tgaggcggcg gtagcggtag cgttcgtagg agttgagcca
    11821 gcggctgacg aggcggttgc gttgcgaggt gttcatatcg gttgtgccgt ctgaagcgga
    11881 aatgtgaaaa agcacaggct tcccgaggaa gggagggtct gtgcttggta ttggtgccgg
    11941 agaagggaat cgaacccccg accttcgcgt tacgaatgcg ctgctctacc gactgagcta
    12001 caccggcgtt ttttcgtcat gatatatatg aacggttgtt tgtgcaactt ttcgggcggg
    12061 cggcaaggca gtgcgcg
//
LOCUS       DAXHNP010000051        11731 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.051, whole genome shotgun sequence.
ACCESSION   DAXHNP010000051 DAXHNP010000000
VERSION     DAXHNP010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11731
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.051"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            26..1510
                     /gene="tldD"
                     /locus_tag="ACFM5C_001006"
     CDS             26..1510
                     /gene="tldD"
                     /locus_tag="ACFM5C_001006"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HFC6068732.1"
                     /translation="MPYNQAPDFLCADTMHPTYSAVQARLLEANRLSPELLAKSLCII
                     GAHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCI
                     DSINRSARAVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAI
                     AKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRMNVTVIAKQGERREQGSA
                     GGGGRYDLAYFDENLVHRFVDSAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAV
                     GHGLEGDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVL
                     IEDGILVGYMQDETNARLMGTQSTGNGRRESYASVPMPRMTNTFMENGGYEPDEIIAS
                     IDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVS
                     MIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRIDAGLTVGGSAI"
     gene            1575..2036
                     /locus_tag="ACFM5C_001007"
     CDS             1575..2036
                     /locus_tag="ACFM5C_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068733.1"
                     /translation="MQEQNRKSSFPIVMLLVSVALWIASLSNVAFYLGNHGSMEGLTV
                     LILGSIFASLDIRYCAVYANYVWLAAIVLLALRKKVVPVHAALWGLALVAFSVKAVYV
                     DEAGNTSDIVRYGAGFYLWYAAFAVATIGTFAGKNKERKAASAADGIKNDV"
     gene            2026..2847
                     /gene="prmC"
                     /locus_tag="ACFM5C_001008"
     CDS             2026..2847
                     /gene="prmC"
                     /locus_tag="ACFM5C_001008"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6068734.1"
                     /translation="MTFDEWLGLSKLPKIEARMLLQYVSEYTRVQLLTRGGEEMPDEV
                     RQRADRLAQRRLNGEPVAYILGVREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPEN
                     GRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALETARKNAADLGARVEFAHGSWF
                     DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP
                     DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMKHLK"
     gene            2933..4321
                     /locus_tag="ACFM5C_001009"
     CDS             2933..4321
                     /locus_tag="ACFM5C_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFC6068735.1"
                     /translation="MNAVVVAVIVMLVLSLSRVHVVLSLTVGAFVGGAVAGMPLQNIA
                     DAAGQVSQAGIIPVFNKGLEGGAKIALSYAMLGAFAMAITHSGLPQQLAGAVVRKLNR
                     GGMPDSVRSGEGAVKWLLLSIILVMGIMSQNIIPIHIAFIPMIVPPLLLVFNRLKIDR
                     RLIACVITFGLVTTYMFLPYGFGAIFLNEILLGNIHSAAPQLDVKNINVMAAMAIPAL
                     GMLAGLLLVFVHYRKPRLYQSNNADTAGNADAANRPQPSAYRSLAAAAAIAVCFAIQL
                     MYEDSLVLGAMLGFAVFMMLGVINRDKANDVFGEGIKMMAMVGFIMIAAQGFAAVMNA
                     TGHIQPLVESSMAIFGNSKGMAALAMLVVGLLVTMGIGSSFSTLPIIAAIYVPLCVGL
                     GFSPLATVAIVGTAGALGDAGSPASDSTLGPTMGLNADGQHDHIRDSVIPTFIHYNIP
                     LLIAGWIAAMVL"
     gene            4322..4546
                     /locus_tag="ACFM5C_001010"
     CDS             4322..4546
                     /locus_tag="ACFM5C_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HFC6068736.1"
                     /translation="MDAVQELERRIVELEIQSALQEDVIAGLNAMVAELRQTLDLQQA
                     QLRLLYQKMQDRNPDAQEPYSLRDEIPPHY"
     gene            complement(4944..5837)
                     /locus_tag="ACFM5C_001011"
     CDS             complement(4944..5837)
                     /locus_tag="ACFM5C_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6068737.1"
                     /translation="MPHPCQTVHTLTARVPKCRLKLNAARRQRYNRPQLFFPNIIMTT
                     TEHDNDDAFLLRYSRHILLDEIGIEGQQKLSAAHILVVGCGGLGAAALPYLAASGIGT
                     LTIADSDTVELHNLQRQVAFDEGDVGKPKAEALADRLKRINHNVDVRTVNEKLDGCRL
                     TGLVQTADIVLDCCDNYATRQAVNRVCVQTKTPLVSGAAVRFEGQLAVYRPDLPDSPC
                     YACLFDGGSASDGICSLFGVFSPLVGIIGSTQAAEALKILLDAGEPSHGRLAVYRALE
                     GGWQYFDLPRNPECPICGAER"
     gene            5880..8582
                     /gene="ppc"
                     /locus_tag="ACFM5C_001012"
     CDS             5880..8582
                     /gene="ppc"
                     /locus_tag="ACFM5C_001012"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HFC6068738.1"
                     /translation="MQLHILNNPKDAALAADAEFLKQSLFNLLHEEASPLVVETVKLL
                     STSDDSAALIEKVLPQLDEQQTHDLTLACGLFAQILNIAEDVHHERRRQIHEEAGRGG
                     AEGSLTETVRRLKAGKADGKSVQRQLDNTSVTAVLTAHPTEVQRQTVLSFNRRIRALL
                     PQRERCTNADALARLRREIDTILLGLWQTSETRRHKLSVNDEINNGVSIFPMSFFEAL
                     PKLYRNMEHDFQMVYPDVCVPNILKIGGWIGGDRDGNPFVSAETLRFAFRRHADAVFR
                     FYRGELDKLYRELPLSIRRVKVNDDVMALAALSPDEELARTEEPYRRAIAYIMARAMG
                     KARALGLGMGCKFGFLEPYASAQEFLDDLKKLQRSLIDNGSRLLAEGRLADLIRSVSV
                     FGFHMMPLDLRQHAGKHADVVAELFQHAGLEDYNSLNEEQKQAALLRELSHQRPLYSP
                     FITYSDHTRHELAIFNEARKIKDEFGEDAVTQSIISNCEQPSDLLALALLLKESGLLA
                     VENGKPQSRINIVPLFETIEALENACPVMETMFRLDWYDALLESRGNIQEIMLGYSDS
                     NKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAG
                     SVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAKLMQALSD
                     VSFKYYRELITHPDFIDYFLQTSPIQEIATLNLGSRPASRKTLARIQDLRAIPWVFSW
                     MQNRLMLPAWYGFGSAVETLCEDKPETLAALREHAQSNPFFQAMLSNMEQVMAKTDIT
                     LAENYAGLSESPEKAAVIFGMIKEEYQRSRKALLDLLQTEELLRDNRSLARSLALRIP
                     YLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG"
     gene            8705..9694
                     /locus_tag="ACFM5C_001013"
     CDS             8705..9694
                     /locus_tag="ACFM5C_001013"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase (FAD) complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFC6068739.1"
                     /translation="MKITVIGAGSWGTALALHFSQHGNRVSLWTRNADQVRQMQEARE
                     NKRGLPGFSFPETLEVCADLADALKDSGLVLIVTSVAGLRSSAELLKQYGAGHLPVLA
                     ACKGFEQDTGLLTFQVLKEVLPDNKKIGVLSGPSFAQELAKQLPCAVVLASENQEWIE
                     ELVPQLNTTVMRLYGSTDVIGVAVGGAVKNVMAIATGLSDGLEYGLNARAALVTRGLA
                     EITRLASAMGAQPKTMMGLAGIGDLILTCTGALSRNRRVGLGLAEGKELHQVLVEIGH
                     VSEGVSTIEEVFNTACKYQIDMPITQTLLQLIRKEMTPQQVVERLMERSARFE"
     gene            9749..10078
                     /locus_tag="ACFM5C_001014"
     CDS             9749..10078
                     /locus_tag="ACFM5C_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068740.1"
                     /translation="MKQNIEKLESSVYTLVQKFETLVSENRRLKETVAELKRAHERQK
                     LEHETAVDELSEALLVQVGKLKEDLQNKIDSLTEENTRYRSLLEQSREKISALAARLP
                     QWQETQQ"
     gene            10089..10394
                     /locus_tag="ACFM5C_001015"
     CDS             10089..10394
                     /locus_tag="ACFM5C_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HFC6068741.1"
                     /translation="MNIEQVHIEVMHARLTVNTPAEEKDTLLQAVGMLNGKAEAIREG
                     GRVADSEKIVIMAALNVVHDLLKTSLNGGDLAIGDFARKIADMDNACQKALSRLAQE"
     gene            10400..10579
                     /gene="ssrS"
                     /locus_tag="ACFM5C_001016"
     ncRNA           10400..10579
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="ACFM5C_001016"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            10757..11188
                     /gene="rplM"
                     /locus_tag="ACFM5C_001017"
     CDS             10757..11188
                     /gene="rplM"
                     /locus_tag="ACFM5C_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFC6068742.1"
                     /translation="MKTFSAKPHEVKREWFVIDAQDKVLGRVAAEVASRLRGKHKPEY
                     TPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQEQFPGRALE
                     QAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLELK"
     gene            11198..11590
                     /gene="rpsI"
                     /locus_tag="ACFM5C_001018"
     CDS             11198..11590
                     /gene="rpsI"
                     /locus_tag="ACFM5C_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFC6068743.1"
                     /translation="MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETS
                     RMVVRQPLVLTENAESFDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAG
                     FVTRDAREVERKKPGLRKARRAKQFSKR"
BASE COUNT         2756 a         3283 c         3232 g         2460 t
ORIGIN      
        1 tttttgttaa tccactatat aacaaatgcc gtataatcaa gcccctgatt ttttatgcgc
       61 cgacactatg catccgacct attccgccgt acaggcgcgg ctgctcgaag ccaaccgcct
      121 ttcccccgaa ctgctcgcca aaagcctgtg catcatcggc gcgcaccacg tcgattacgc
      181 cgacatctac tgccagcgca ccgcttatga aagctggcat ttggaagagg gcatcgtcaa
      241 atcgggcagc ttccaaatca atcagggcgt gggcgtgcgc gccgtttcgg gcgataaaac
      301 cgcctttgcc tacgccgaca gcctgtgcat cgattcgata aaccgttccg cccgcgccgt
      361 ccgcgcgatt ggggcggcag gcggcaaggt gtccgccaaa atgccgtctg aaacgcgcgg
      421 caagccggtt tgttccgcgt ccgaccccat tgccggcctc gattccgccg ccaaagtcgc
      481 gctgttgaac aaagtggaag caatcgccaa agccgccgat ccgcgcatcg tgcaagtgat
      541 ggccggtttg acctgcgaat acgacatggt ttacctcgcc cgtctggacg gtaaacacgc
      601 tgccgatatc cgcccgatgg tgcgcatgaa cgttaccgtt atcgccaaac agggcgaacg
      661 ccgcgaacag ggcagcgcgg gcggcggcgg acgctacgac ttggcttatt tcgatgaaaa
      721 cttggtgcat cggtttgtcg attccgccgt caaacaagcc ctgaccaatc ttgaatcccg
      781 tcctgcgcct gccggcgaaa tgaccgtcgt tttgggcaac ggctggccgg gcgtgttgct
      841 gcacgaagcg gtcggacacg gtttggaagg cgatttcaac cgcaagggaa ccagcgtctt
      901 ttccggccga atcggcgagc gcgtcgccgc caaaggcgtt accgttgtgg atcaaggcga
      961 tattgccggc cggcgcggtt cgctcaacat cgacgacgaa ggcaacgaaa cccgccgcac
     1021 cgtattgatt gaagacggca tcttggtcgg ttatatgcag gacgaaacca atgcccgcct
     1081 gatgggcacg caatcgaccg gcaacggccg ccgcgaaagc tacgcctccg tccctatgcc
     1141 gcgcatgacc aataccttta tggaaaacgg cggctacgaa cccgacgaaa tcatcgcgtc
     1201 catcgacaaa ggcatttacg ccgtcaactt cggcggcgga caggtggaca ttaccagcgg
     1261 caaattcgtg ttcagcgcgt ccgaagcgtg gtgggtggag ggcggcaggc tgcaataccc
     1321 cgtcaaaggc gcgaccatta tcggcaacgg ccccgaagtg ctgaaacacg tttccatgat
     1381 aggcaacgat actgcgctcg acagcggtgt cggcgtgtgc ggcaaagaag ggcagagcgt
     1441 ccccgtcggc gtggggcaac cgactttgcg gattgatgcc ggactgaccg tcggcggcag
     1501 cgcaatctga cgcggaatcc ggcacgatgc cgtctgaaag gttttcaggc ggccttttac
     1561 attaggataa aaccatgcag gaacagaatc ggaaatcaag ttttcccata gtgatgttgc
     1621 tggtgtcggt tgccctgtgg atagcgtctt tatccaatgt tgcattttat ttgggcaatc
     1681 atggaagcat ggagggtttg accgttttga ttttggggtc gatatttgct tctttggata
     1741 tcaggtattg tgcggtctat gcgaattatg tttggttggc ggccattgtt ttgctggcgt
     1801 tgcggaagaa ggtcgtgcct gtccatgcgg cactttgggg cttggcgttg gtggctttca
     1861 gtgtgaaagc cgtatacgtc gatgaagcag ggaatacatc ggatattgtg cgctacggtg
     1921 caggatttta tttgtggtat gccgcatttg cggttgccac catcggtacg tttgccggaa
     1981 agaataagga aagaaaagcc gcatcggcgg cagacgggat aaaaaatgac gtttgacgaa
     2041 tggttgggct tgtcaaaact gcctaaaatt gaagcaagaa tgctgctgca atatgtttcg
     2101 gaatatacgc gcgtgcagtt gttgacgcgg ggcggggaag aaatgccgga cgaagtccga
     2161 cagcgggcgg acaggctggc gcaacgccgt ctgaacggcg agccggttgc ctatatttta
     2221 ggtgtgcgcg aattttatgg cagacgcttt acagtcaatc cgagcgtgct gattccgcgc
     2281 cccgaaaccg aacacttggt cgaagccgta ttggcgcgcc tgcccgaaaa cgggcgcgtg
     2341 tgggatttgg ggacgggcag cggcgcggtt gccgtaaccg tcgcactcga acgccccgat
     2401 gcgtttgtgc gcgcatccga catcagcacg cccgcccttg aaacggcgcg gaaaaatgcg
     2461 gcagatttgg gcgcgcgggt cgaatttgca cacggttcgt ggttcgacac cgatatgccg
     2521 tctgaaggga aatgggacat catcgtgtcc aacccgccct atatcgaaaa cggcgataaa
     2581 catttgttgc aaggcgattt gcggtttgag ccgcaaatcg cgctgaccga cttttcagac
     2641 ggcctaagct gcatccgcac cttggcgcaa ggcgcgcccg accgtttggc ggaaggcggt
     2701 tttttgttgt tggaacacgg tttcgatcag ggcgcggcgg tgcgcggcgt gttggcggag
     2761 aatggttttt caggagtgga aaccctgccg gacttggcgg gtttggacag ggttacgctg
     2821 gggaagtata tgaagcattt gaaataattg tttgcaaaat tggcgggttt tccattattg
     2881 ggttatgatg tgtttcgata tgtaaacatt tataggtttg gagcgataaa caatgaatgc
     2941 agtcgtagtt gccgtaatcg ttatgctggt gctgtcgctg tcgcgcgtgc acgtggtatt
     3001 gagcctgacg gtcggcgcgt ttgtcggcgg cgcggtggcg ggtatgccgc tgcaaaacat
     3061 tgccgatgcg gcgggacagg tcagtcaggc ggggattatc cccgtgttca acaaaggttt
     3121 ggaaggcggt gcgaagattg cgctttctta tgcgatgctc ggcgcgtttg caatggcgat
     3181 tacccattcc ggcctgccgc aacagcttgc cggcgcggtc gtccgcaagc tgaaccgggg
     3241 cggtatgccc gacagcgtgc gttcgggcga gggcgcggtc aaatggctgc tgctttccat
     3301 catccttgtg atgggcatta tgagtcagaa catcatcccc atccacatcg cctttatccc
     3361 gatgattgtt ccgccgctgc ttttggtgtt caaccgcctg aaaatcgacc gccgcctgat
     3421 tgcgtgcgtc atcactttcg ggctggttac gacttatatg ttcctgcctt acggcttcgg
     3481 cgcgattttt ttgaatgaaa tcctgttggg caacatccat tccgccgcgc cgcagcttga
     3541 tgtgaaaaac atcaacgtaa tggcggcaat ggcgattccc gcgttgggaa tgctggccgg
     3601 actcctgctg gtgtttgtcc attaccgcaa accgcgcctg taccaaagca acaatgccga
     3661 tacggcgggc aacgccgatg cggcaaaccg tccgcagccg tccgcctacc gcagcctggc
     3721 cgccgccgcc gccattgccg tatgctttgc catccagttg atgtatgaag actcgctggt
     3781 gttgggcgcg atgctcggtt tcgccgtatt tatgatgttg ggcgtcatca accgcgacaa
     3841 ggcaaacgac gtattcggcg aaggcatcaa gatgatggcg atggtcggct tcattatgat
     3901 tgccgcgcag ggttttgccg ccgtgatgaa tgcgaccggg catattcagc cgctggtgga
     3961 aagcagtatg gcgatattcg gcaacagcaa aggtatggcg gcgttggcga tgctggtggt
     4021 ggggcttttg gtaacgatgg gcatcggttc gtccttttcc actttgccga ttattgccgc
     4081 gatttatgtg cctttgtgtg tcggtttggg tttttcgccg cttgccaccg tcgccattgt
     4141 cggcacggcg ggggcgttgg gcgatgccgg ttcgcctgcg tccgattcca cgctgggccc
     4201 gacgatgggg ctgaacgccg acgggcagca cgaccacatc cgcgattccg ttatcccgac
     4261 cttcatccac tacaacatcc cgctgctgat tgccggctgg attgccgcga tggtgctgta
     4321 aatggacgcg gttcaagagt tggaacgccg tattgtcgaa ctggaaatcc aatccgcgct
     4381 tcaggaggac gtaatcgccg gcctgaacgc gatggtggcg gaattgcggc agacgctgga
     4441 tttgcagcag gctcagttga ggctgctgta tcaaaaaatg caggacagga atcccgacgc
     4501 gcaagagccg tattccctgc gcgacgagat tccgccgcat tattgatgcg ccgccgtatc
     4561 cggatttcct taaaaaaggc tgtgtttgaa tattttgccg atgcaaacct aagatgtaac
     4621 tttaatcagt cggacaaaat gccttttatc cgatggaacc gttttccgcc cgaacggaaa
     4681 taagcggttt tcccctgtaa acagataaaa ccaaccgggt attcatacac agccaaaaaa
     4741 aagccgtccg aacccaaagg ggacagacgg ccaaacacat tacggggaaa acgtcttact
     4801 caatgagtct gcgaaacaga cattgctaaa acaactgcaa ttataaggta agtttatttt
     4861 tttgcaaaga aatgtaaatt tttaaatttt taaaaccgtt ccgccgcatc cgtttggata
     4921 ccgtctgaaa cggcggcagg gttttaccgt tccgcgccgc aaatcgggca ttcggggttg
     4981 cgcggcaggt cgaaatattg ccagccccct tccaaggcac ggtaaaccgc cagcctgccg
     5041 tgcgacggtt cgcccgcatc cagcaggatt ttcagagcct ccgccgcttg ggtactgccg
     5101 atgatgccga ccagcggcga gaacacgccg aagagggaac agatgccgtc tgaagccgat
     5161 ccgccgtcaa acaggcaggc gtaacacggc gagtcgggca agtcgggacg gtacacggca
     5221 agttgccctt caaagcgcac cgctgctcct gaaaccagcg gtgttttcgt ttgtacgcag
     5281 acacggttga cggcttggcg cgtggcgtag ttgtcgcagc agtctaaaac gatgtcggcg
     5341 gtttgaacca aaccggtcag gcggcagccg tcgagttttt cgttgacggt gcggacatcg
     5401 acgttatggt tgatgcgttt caggcggtct gccaaggctt cggctttggg cttgccgaca
     5461 tcgccctcgt caaatgcgac ttggcgttgc aggttgtgca gctcgaccgt gtcggaatcg
     5521 gctatggtca gcgtgccgat gccggaagcg gcgagatagg gcagggcggc ggcacccaaa
     5581 ccgccgcagc cgacgaccaa aatatgcgcg gcggaaagtt tctgctgccc ttcgatgccg
     5641 atttcgtcca agaggatgtg gcggctgtac cgcagcagga atgcatcgtc gttgtcgtgt
     5701 tcggtcgtgg tcatgatgat gttcggaaaa aacagttgtg ggcgattgta acgctgccgt
     5761 cgggcggcgt tcaacttcag acggcatttc gggacacggg cggttaaagt gtgaacggtt
     5821 tggcacggat gcggcatttg aggtacattt acagtattta cggcaatgag agaaaaatca
     5881 tgcaactgca tattctgaac aatccaaagg acgcggcttt ggcggcggac gcggaatttc
     5941 tgaaacaatc cctgttcaac ctcctgcacg aagaagcctc gccattggtt gtcgaaacgg
     6001 tcaaactctt gtccacttcc gacgacagcg cggcattgat tgaaaaagta ttgccgcaat
     6061 tggacgaaca acaaacccac gatttaacct tggcctgcgg cctgttcgcc cagattttga
     6121 atatcgccga agacgtgcac cacgaacgcc gccgccaaat ccacgaagaa gccggacgcg
     6181 gcggcgcgga aggcagcctg acggaaaccg tccgcaggct caaagcgggg aaagccgacg
     6241 gcaaatcggt gcagcggcag ttggacaata cgtccgttac cgccgttttg accgcgcacc
     6301 cgaccgaagt gcaacgccaa accgtcttaa gcttcaaccg ccgcatccgc gcactgttgc
     6361 cgcaacgcga acgctgcacc aatgccgacg cgctggcacg gctgcgccgc gaaatcgaca
     6421 ctatcctgct gggcttgtgg cagaccagcg aaacgcgccg ccacaaactc agcgtcaacg
     6481 acgaaatcaa caacggcgtg tccatcttcc cgatgagctt tttcgaagcc ctgcccaagc
     6541 tctaccgcaa tatggaacac gactttcaga tggtctatcc cgatgtctgc gttccgaaca
     6601 tcctcaaaat cggcggctgg atcggtggcg accgcgacgg caatccgttc gtttctgccg
     6661 aaaccttgcg ttttgccttc cgccgccacg ccgatgccgt gttccgtttt taccgtggcg
     6721 aactcgacaa actttaccgc gaactgccgc tctccatccg ccgcgtcaaa gtcaacgacg
     6781 acgtaatggc actggcagcc ctctcgcctg acgaagaact tgcccgcacg gaagaaccct
     6841 accgccgcgc cattgcttac atcatggcgc gcgctatggg caaagcgcgc gcgctcggtt
     6901 tgggcatggg ctgcaaattc ggctttctcg agccttatgc ttcggcacaa gaatttctcg
     6961 atgatttgaa aaaattgcaa cgttccctta tcgacaacgg cagccgcctg cttgccgaag
     7021 gccgtctggc agacctcatc cgttccgtgt ccgtgttcgg cttccacatg atgccgctcg
     7081 acctgcgcca acacgcaggc aaacacgccg atgtggttgc cgagcttttc caacacgcag
     7141 gcttggaaga ctacaacagc ctgaatgaag agcaaaaaca agccgccctg ttgcgcgaat
     7201 tgagccatca acgtccactg tacagtccgt tcatcacata cagcgaccat actcgccacg
     7261 aactggcgat tttcaatgaa gcgcgcaaaa tcaaagacga attcggcgaa gatgccgtta
     7321 cgcaaagcat tatttccaac tgcgaacaac ccagcgacct gctcgccttg gcattgctgc
     7381 tgaaagaaag cggcctgttg gcggtagaaa acggcaaacc gcaaagccgc atcaatatcg
     7441 tgccgctgtt tgaaaccatc gaagcgttgg aaaacgcctg tccggtcatg gaaaccatgt
     7501 tccgcctcga ctggtacgat gccctgctcg aaagccgcgg caatatccaa gaaatcatgc
     7561 tgggctactc cgactccaac aaggacggcg gctacgttac cagctcatgg tgcctctatc
     7621 aggcggaatt gggcttggtc gaactcttca aaaaatacga tgtccgcatg cgcctgttcc
     7681 acggacgcgg cggcagcgtc ggacgcggcg gcggcccttc ttaccaagcc attttggcgc
     7741 aaccggccgg cagcgtggcg ggacaaatcc gcattaccga acaaggcgaa gtcattaccg
     7801 ccaaatacgc cgaccccggc aatgcccaac gcaacttgga aaccttggtt gccgcgactt
     7861 tggaagccag catcctgccg gataaaaaag accctgatgc caaactgatg caggcattgt
     7921 cggacgtatc gttcaaatac taccgcgaac tgattaccca ccccgacttc atcgactact
     7981 tcctgcaaac cagcccgatt caggaaatcg ccaccctcaa cctcggcagc cgtcctgcca
     8041 gccgcaagac cttagcgcgg attcaagact tgcgcgcgat tccgtgggta ttttcctgga
     8101 tgcaaaaccg cctcatgctg cctgcttggt acggtttcgg cagcgcggtg gaaaccttgt
     8161 gcgaagacaa acccgaaacg ctcgccgccc tgcgcgaaca cgcccaaagc aacccgttct
     8221 tccaagccat gctttccaat atggagcaag tgatggcgaa aaccgacatc accctcgcgg
     8281 aaaactatgc cggcttgagc gaatcgccgg aaaaagccgc cgtcatcttc ggcatgatta
     8341 aggaagaata ccaacgcagc cgcaaagccc tgctcgacct gctgcaaacc gaagaacttt
     8401 tacgcgacaa ccgcagcctc gcccgttcgc ttgccttgag gattccctac ctgaacgcgc
     8461 tcaacggcct gcaggtcgcc atgctcaaac gcctgcgtaa agaacccgac aatccgcacg
     8521 cgctgctgat ggttcacctg accatcaacg gcgtggcgca aggtttgcgc aatacaggct
     8581 gattgtgccg catcggggca aaatgccgtc tgaacacctt tcagacggca tttccctgac
     8641 cgcacttgca gagaaacacc gattgtttta aagtgaacgg cagtgatatg ttgaaagacg
     8701 accaatgaaa attaccgtta tcggcgcagg ttcgtggggt acggcgctcg ccctgcactt
     8761 ttcccaacac ggcaaccgcg tatccctgtg gacgcgcaac gcagaccaag tccgccaaat
     8821 gcaggaagcg cgtgaaaaca aacgcggact gcccggcttt tcctttcccg aaaccttgga
     8881 agtgtgtgcg gatttggcag acgcgctcaa agacagcgga cttgtcctta tcgtaacctc
     8941 cgttgccgga ttgagaagca gcgcagagct gctcaaacag tacggcgcgg gacacctccc
     9001 cgtcctcgcc gcctgcaaag gattcgagca ggatacaggg ctgctgacct ttcaagtatt
     9061 gaaagaagta ttgcccgaca ataagaaaat cggcgtactc tccggcccga gttttgcaca
     9121 ggaactcgcc aaacaactgc cctgtgccgt cgtcctcgcc tccgaaaacc aagagtggat
     9181 tgaagaactc gtaccgcagc tcaacacgac tgtcatgagg ctttacggca gtaccgacgt
     9241 tatcggcgtg gcggttggcg gcgcggtaaa aaatgttatg gcgattgcca ccggattgtc
     9301 cgatggccta gagtacgggc ttaacgcccg tgccgcactg gttacgcgcg gattagctga
     9361 aattacccgc cttgcctccg caatgggcgc acagcccaaa accatgatgg ggctggcagg
     9421 catcggcgac ctcatcttga cctgcactgg cgcactctca cgcaaccgcc gcgtcggctt
     9481 gggtttggca gaaggcaagg aactgcatca ggtgctggtc gaaatcggac acgtttccga
     9541 aggggtcagc acgatagaag aagtcttcaa tactgcctgt aagtaccaaa tcgatatgcc
     9601 gattacccaa accctgctgc aactcatccg taaggaaatg acccctcagc aggtcgtcga
     9661 aagactgatg gaacgcagcg cgcgtttcga ataaacaaca gacagatgcc gtctgaggcc
     9721 ttcagacggc atacggacag gtaaggttat gaaacaaaat atcgaaaaac tcgaaagcag
     9781 cgtttatacg ctggtacaaa aattcgaaac cctcgtcagc gaaaaccgcc gcctcaaaga
     9841 aaccgtcgcc gaactcaaac gggcgcacga gcggcaaaaa ctcgaacacg aaaccgccgt
     9901 cgacgaactc agcgaagccc tgctcgtcca agtcggcaaa ctcaaagaag acctgcaaaa
     9961 caaaattgac agcctgacag aagaaaatac acgataccgc agcctgctcg aacagagcag
    10021 ggaaaaaatc agcgcactgg cagcgcgcct cccccaatgg caggaaacgc agcaataagg
    10081 attaaaggat gaacatcgaa caagtccaca tcgaagtcat gcacgcccgg ctgaccgtca
    10141 acacgccggc agaagaaaaa gacacactgt tgcaggcagt cggaatgctc aacggcaaag
    10201 ccgaagccat ccgcgaaggc ggacgcgtcg cggacagcga aaaaatcgtc attatggccg
    10261 cgctcaacgt cgtccacgac ctgttgaaaa cctccctgaa cggcggcgat ttggcaatcg
    10321 gcgattttgc gcgtaaaata gccgatatgg acaacgcctg ccaaaaagca ctatcccgct
    10381 tggcgcagga ataacccctt tttccctgcg gtgtccgcga aggcatatat tcctttgaac
    10441 caataagttc gcttaaggtt gccgggagca gtagtgggcg cgagcgtcct tttgcggacg
    10501 cacccgaaac tacccgaggc agccgccttg tcagcaaggt tcaagcggat tcggccgaaa
    10561 cggctctcgc ggggattccc attcaaaacc gcatcgcaac gatgcggttt ttcacattgg
    10621 ccgccgcccc gcccgaaaaa gcagtatgca gtctgccgaa atccggaaaa tccttccgta
    10681 acgcggtaat gcgattgaca aaatcgaatc ctgtctttaa aatttacaac tttctatatc
    10741 tatttggatt tccactatga aaaccttttc agcgaaaccc cacgaggtga agcgcgaatg
    10801 gttcgtcatc gatgcccaag acaaagtctt gggtcgcgtt gcggccgaag tcgccagccg
    10861 tctgcgtggc aaacacaaac ctgaatacac cccccacgtc gataccggcg attacatcat
    10921 tgttatcaat gcggacaaac tgcgtgtaac cggtgccaaa ttcgaagata aaaaatactt
    10981 ccgccattcc ggttttccag gcggtatcta cgaacgcact ttccgcgaaa tgcaagagca
    11041 attcccgggc cgcgctttgg aacaagctgt aaaaggtatg ctgcccaaag gtcctttggg
    11101 ttacgccatg attaaaaaac tgaaagtgta tgcgggtgcg gaacacgccc atgctgcgca
    11161 acaacccaaa gttttggaac tgaaataagg acgcgacatg aacggtaaat actactacgg
    11221 cacaggccgc cgcaaaagtt cagtggctcg tgtattcctg attaaaggta caggtcaaat
    11281 catcgtaaac ggccgtcccg ttgacgaatt cttcgcacgc gaaaccagcc gaatggttgt
    11341 tcgccaaccc ttggttctga ctgaaaacgc cgaatctttc gacatcaaag tcaatgttgt
    11401 tggcggcggc gaaaccggcc agtccggcgc aatccgccac ggcattaccc gtgccctgat
    11461 cgacttcgat gccgcgttga aacccgcctt gtctcaagct ggttttgtta cccgcgatgc
    11521 ccgcgaagtc gaacgtaaaa aaccgggtct gcgcaaagca cgccgtgcaa aacaattctc
    11581 caaacgttaa tgttggaaat tcaaaaaacc ctgcttatcg cagggttttt tatttgtagt
    11641 agacggtttc ccattggcaa tctaaagatt acagattgag acctttgcaa aattccccaa
    11701 aatcccctaa attcccacca agacatttag g
//
LOCUS       DAXHNP010000052        11655 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.052, whole genome shotgun sequence.
ACCESSION   DAXHNP010000052 DAXHNP010000000
VERSION     DAXHNP010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11655
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.052"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(354..776)
                     /locus_tag="ACFM5C_001019"
     CDS             complement(354..776)
                     /locus_tag="ACFM5C_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HFC6068744.1"
                     /translation="MQVTSKWIDGMCFVGTTEGGHSVVMEGSAAEGKAKRGPSPLEML
                     LLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKE
                     SAIERAVQMSAEKYCSASIMLGKAAKITHSFEIAGADK"
     gene            complement(894..1565)
                     /locus_tag="ACFM5C_001020"
     CDS             complement(894..1565)
                     /locus_tag="ACFM5C_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HFC6068745.1"
                     /translation="MMKTFKNIFSAAILSAALPCAYAAGLPQSAVLHYSGSYGIPATM
                     TFERSGNAYKIVSTIKVPLYNIRFESGGTVVGNTLHPTYYRDIRRGKLYAEAKFADGS
                     VTYGKAGESKTEQSPKAMDLFTLAWQLAANDAKLPPGLKITNGKKLYSVGGLNKAGTG
                     KYSIGGVETEVVKYRVRRGDDTVMYFFAPSLNNIPAQIGYTDDGKTYTLKLKSVQING
                     QSAKP"
     gene            complement(1581..2207)
                     /gene="purN"
                     /locus_tag="ACFM5C_001021"
     CDS             complement(1581..2207)
                     /gene="purN"
                     /locus_tag="ACFM5C_001021"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFC6068746.1"
                     /translation="MKNIVILISGRGSNMQAIVNAAIPNVRIAAVLSNSETAAGLQWA
                     AERGITTGSLNHKNFASRLAFDTAMMEKIDAYQPDLVVLAGFMRILTPEFCARYEGRL
                     MNIHPSILPSFTGLHTHERALEAGCRVAGCTIHFVTAELDCGPIVSQGIVPILDGDTA
                     DDVAARVLAVEHKLYPKAVADFAAGRLIIEGNRVRNSENADAARFLTA"
     gene            complement(2314..3132)
                     /locus_tag="ACFM5C_001022"
     CDS             complement(2314..3132)
                     /locus_tag="ACFM5C_001022"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6068747.1"
                     /translation="MNTIFKISALTLSAALALSACGKKEAAPASASEPAAASSAQGDT
                     SSIGSTMQQASYAMGVDIGRSLKQMKEQGAEIDLKVFTEAMQAVYDGKEIKMTEEQAQ
                     EVMMKFLQEQQAKAVEKHKADAKANKEKGEAFLKENAAKDGVKTTASGLQYKITKQGE
                     GKQPTKDDIVTVEYEGRLIDGTVFDSSKANGGTVTFPLSQVIPGWTEGVQLLKEGGEA
                     TFYIPSNLAYREQGAGDKIGPNATLVFDVKLVKIGAPENAPAKQPAQVDIKKVN"
     gene            complement(3391..3831)
                     /locus_tag="ACFM5C_001023"
     CDS             complement(3391..3831)
                     /locus_tag="ACFM5C_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HFC6068748.1"
                     /translation="MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQEL
                     DKMLWQYEAESFIPHEIWETEEAMPSETSVLLACGGNLPRIPEGMTVLNLSDGFWNTA
                     PVLPARVLEIVGNSLEDLADARERFTAYRRSGFAIEHHGMEGKA"
     gene            complement(3894..5300)
                     /locus_tag="ACFM5C_001024"
     CDS             complement(3894..5300)
                     /locus_tag="ACFM5C_001024"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFC6068749.1"
                     /translation="MEFSTKTEILQEQQAGAQLFVCTEEAQLNHPTALALLSSLEEGQ
                     TFADTKIPTGNGLQAVAVVRLEKTDRAALNKAAAEAAKWAQNQETVNVDIHAFDEAQA
                     AAVAEAFAIAFGNAAYRFDRYKKEAKPAKFETAVFHSAHEAAVKEALRVAEAQVYGQS
                     LCRDLGNAAPNECTPEFLARTAKAEAEKLGAHAKIIEKDYIKENMGSFWSVAKGSVED
                     PYLVELSYFGAADKEAAPVVLVGKGITFDTGGISLKPGLNMDEMKFDMCGAATVISTF
                     CAAVKLQLPINLIAVVATCENMPSGAANKPGDVVKSMKGLTIEVLNTDAEGRLILCDA
                     LTYAEQFKPKAVIDVATLTGACIVALGHDVSGVMGNNQDLVDSLLAASYNVDDKAWQL
                     PLFETYKDQLKSNFADIPNIGTPGAGTITAATFLSYFTEDYPWAHLDIAGTAWKSGAE
                     KGATGRPVPLLLNYLRNL"
     gene            5470..6585
                     /gene="lptF"
                     /locus_tag="ACFM5C_001025"
     CDS             5470..6585
                     /gene="lptF"
                     /locus_tag="ACFM5C_001025"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HFC6068750.1"
                     /translation="MIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVA
                     IDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPV
                     MQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY
                     FVETFDTESGIMKNLFLREQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPG
                     RADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVS
                     VLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLP
                     MHIIMFVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK"
     gene            6582..7652
                     /gene="lptG"
                     /locus_tag="ACFM5C_001026"
     CDS             6582..7652
                     /gene="lptG"
                     /locus_tag="ACFM5C_001026"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HFC6068751.1"
                     /translation="MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSY
                     GIWEMLGYTALKMPARAYELMPLAVLIGGLVSLSQLAAGSELAVIKASGMSTKKLLLI
                     LSQFGFIFAIATVALGEWVAPTLSQKAENIKAAAINGKISTGNTGIWLKEKNSIINVR
                     EMLPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSI
                     AAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQNTRIYAIAWWRKLVYP
                     AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLA
                     GALPTIAFALLAVWLIRKQEKR"
     gene            7862..10447
                     /gene="acnB"
                     /locus_tag="ACFM5C_001027"
     CDS             7862..10447
                     /gene="acnB"
                     /locus_tag="ACFM5C_001027"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFC6068752.1"
                     /translation="MLEAYRKAAAERAALGIPALPLTAQQTADLVELLKSPPAGEGEF
                     LVELLAHRVPPGVDDAAKVKASFLAAVAEGSASSPLISPEYATELLGTMLGGYNIHAL
                     IELLDDDKLAPIAAKGLKHTLLMFDSFHDVQEKAEKGNKYAQEVLQSWADAEWFASRA
                     KVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKPGEVG
                     PIKLLEELKAKGHPVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGG
                     KIAPIFFNTQEDSGALPIEVDVSALKMGDVVDILPYEGKIVKNGETVAEFELKSQVLL
                     DEVQAGGRINLIIGRGLTAKAREALKLPASTAFRLPQAPAESKAGFTLAQKMVGRACG
                     LPEGQGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAAYP
                     KPVDVKTHKELPAFISTRGGVSLRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIGIS
                     FPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTV
                     AKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSN
                     VVLMKNMIANGYQDPRTLERRIKAMEKWLANPELLEADKDAEYAAVIEINMDDIKEPI
                     IACPNDPDDVCFMSERSGTKIDEVFIGSCMTNIGHFRAASKLLEGKSDIPVRLWVAPP
                     TKMDAKELSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVHEGATVMSTSTRNFPNRLG
                     KNTFVYLGSAELAAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA
                     ETVNV"
     gene            10589..11584
                     /locus_tag="ACFM5C_001028"
     CDS             10589..11584
                     /locus_tag="ACFM5C_001028"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFC6068753.1"
                     /translation="MNLKNRHFLKLLDFTPEEITAYLDLAAELKAAKKAGREIQRMKG
                     KNIALIFEKTSTRTRCAFEVAARDQGAGVTYLEPSASQIGHKESIKDTARVLGRMYDA
                     IEYRGFGQEVVEELAKYAGVPVFNGLTNEFHPTQMLADALTMREHSGKPLNQTAFAYV
                     GDARYNMGNSLLILGAKLGMDVRIGAPQSLWPSEGIIAAAHAAAKETGAKITLTENAH
                     EAVKNVDFIHTDVWVSMGEPKEVWQERIDLLKDYRVTPELMAASGNPQVKFMHCLPAF
                     HNRETKVGEWIYETFGLNGVEVTEEVFESPASIVFDQAENRMHTIKAVMVAALGD"
BASE COUNT         2673 a         3233 c         3039 g         2710 t
ORIGIN      
        1 aaggcgaggc aacgccgtac tggtttttgt taatccacta taattcaata aattaatata
       61 tggcttaaaa taacgggatg cccgcctccc gtcctcctgc agaagcgggc gggtatcatt
      121 ttaaaacgcg gcatttaaaa tttgaccgaa aattgttgac aatccggaat caagtctgca
      181 caataccccg acaagtccaa gtattataaa ggctgaataa agaggaaaca gcaggcagat
      241 atattcggga ggtgcagtcc gaatatatct gcttttttat gcgcctccgg attgcctgcc
      301 gcacctttcc cttcagacgg catcagccgt ttccccataa tgccgcccga tgcctattta
      361 tctgccccgg caatttcaaa actgtgggta atctttgccg ctttgcccaa cataatcgaa
      421 gccgaacagt atttttcggc agacatctga acggcgcgct caatggccga ttctttcaaa
      481 tcatgcccga atactttgaa atggatgtgg atttcggtaa acacgcgcgg cgcatcgtcc
      541 gcccgtttcg ccgtaaccgt cgcacggcag tcagtcactt tctgacgctg tttttcggca
      601 atcatcacca catcgatgct cgaacagccc gccacgccca acagcagcat ttccaaaggg
      661 ctgggcccgc gcttagcctt accttctgcc gccgacccct ccataacgac gctgtgcccg
      721 ccttccgttg ttccgacaaa gcacattccg tctatccatt ttgatgtaac ctgcatggtg
      781 tcattcctga aaatagcgtt aaaaccgctt tgcatatggc gttattgtaa acaatttcaa
      841 gcggcttatg cagaaatatg gacaaaacgg caaaaaaacg cctgaaaatc gatttacggt
      901 ttggcggact ggccattgat ctgcaccgat ttgagtttca gcgtataggt tttgccgtcg
      961 tcggtatagc cgatttgtgc cggaatattg ttcagggacg gtgcgaagaa atacattacc
     1021 gtatcgtcgc cgcgccgcac ccgatatttg acgacttcgg tttccacgcc gcctatgctg
     1081 tattttcctg tacccgcctt attcaaaccg ccgacggaat aaagtttttt gccgttggtg
     1141 attttcagcc ccggggggag tttcgcgtca tttgccgcca actgccaggc aagcgtgaac
     1201 aaatccatag ccttggggct ttgctcggtt ttgctctcgc ccgctttgcc gtaggttacg
     1261 ctgccgtcgg cgaatttggc ttccgcatac agtttgcccc tgcgtatgtc tctatagtag
     1321 gtagggtgca gggtattgcc gacaaccgta ccgccggact cgaaacggat attgtatagc
     1381 ggcactttaa tcgtcgaaac gattttgtaa gcattgccgc tgcgttcaaa tgtcatcgtg
     1441 gcgggaatgc cgtagctgcc ggaatagtgc agcacggcgg attggggcag ccctgccgca
     1501 tacgcgcacg gcagggcggc ggacaaaatg gcggcggaaa atatattttt aaaagtcttc
     1561 atcatttgct cccgcccggt ttacgccgtc aggaaacggg cggcatcggc gttttccgaa
     1621 tttctgacgc ggtttccctc gataatcagg cggccggcgg caaaatcggc aacggctttc
     1681 ggatagagtt tgtgttcgac agccaaaacc cgggcggcaa catcgtctgc cgtatcgccg
     1741 tcgagtatcg gcacaatccc ttgcgataca atcgggccgc aatccagttc ggcagtaacg
     1801 aaatggatgg tacagccggc aacgcggcaa cctgcctcca aagcgcgttc gtgcgtatga
     1861 agtccggtaa acgagggcag gatggacgga tggatgttca tcagcctgcc ttcgtaacgg
     1921 gcgcagaact cgggggtcag aatccgcata aaacccgcca aaaccaccaa atcgggttga
     1981 tatgcgtcga ttttctccat catggcggta tcgaaggcaa gccgggacgc aaagttttta
     2041 tggttcaggc tgccggtcgt gatgccgcgt tcggccgccc attgcaaacc ggcagccgtt
     2101 tcgctgttgc tcaacacggc ggcaatgcgg acgttgggaa tggcggcgtt gacgatggcc
     2161 tgcatattgc taccccggcc ggaaatcagg atgacgatgt ttttcataat ggtgcgcttt
     2221 tgaaagggat gccgtctgaa ccgctgtttg gtggtttcag acggcatttg ccgtaaaaat
     2281 gcccgaaaac ctgtttcggg catggattcg gacttaattt acttttttga tgtcgacttg
     2341 agccggctgc ttggcgggcg cgttttcggg tgcgccgatt ttgaccagtt tcacatcaaa
     2401 taccaaagtg gcgttcgggc cgattttgtc gcccgcaccc tgttcgcggt aggcaaggtt
     2461 ggacgggatg tagaacgtgg cttcgccgcc ttctttcaga agttgtacgc cttcggtcca
     2521 acccggaatc acttggctca aagggaaggt gaccgtgccg ccgttggctt tgctgctgtc
     2581 gaataccgta ccgtcaatca ggcggccttc gtattccacg gtaacgatgt cgtctttggt
     2641 cggctgtttg ccttcaccct gtttggtgat tttgtattgc aggccggaag cagtggtctt
     2701 cacgccgtct ttggcggcat tttctttcag aaaggcttcg cctttttctt tattggcctt
     2761 cgcgtccgcc ttgtgttttt ctacggcttt agcctgttgt tcctgaagga atttcatcat
     2821 gacttcctga gcctgctctt cggtcatttt gatttctttg ccgtcataca ctgcctgcat
     2881 ggcttcggta aagactttca aatcgatttc cgcgccctgt tccttcattt gcttcaggga
     2941 gcgtccgatg tccacgccca tcgcatagct tgcctgctgc atcgtgctgc cgatcgaaga
     3001 ggtgtcgccc tgcgcggaag aagcggcggc aggttcggat gcagatgcgg gggcggcttc
     3061 ttttttgccg caggcggaaa gtgccaaagc ggcggaaagg gtcagtgcgc tgattttgaa
     3121 aatggtgttc atgatggatc ttcgctgtcg ataaggtcgg aaaaacggga ttatagccga
     3181 gtttgaatgt ttcaacacac aggatgacac ataaagcgtc aatcgtgtgt tgccctgttt
     3241 tggaagggat tgaaccttcc aaaataagtt ttgattctac cgccccgagg gacagatgtc
     3301 caagtggcgg ggttcaaccg ataaggaaat tttaatcaaa tagaatcaag cctgtttaaa
     3361 ttttgtaaat gcggcatttc agacggcatt ttatgccttg ccctccatgc cgtgatgttc
     3421 gatggcaaaa ccgcttcggc ggtaggcggt aaagcgttcg cgcgcgtcgg cgagatcttc
     3481 caagctgttg ccgacgattt ccaaaacgcg cgcgggcaag accggagcgg tgttccaaaa
     3541 accgtcggac aggttcaaaa cggtcatgcc ttcgggaatt cggggcagat tgccgccgca
     3601 ggcaagcagg acggatgttt cagacggcat ggcttcttcc gtttcccaaa tttcgtgcgg
     3661 aatgaaactc tcggcctcgt attgccaaag cattttgtcc aattcctgaa gctgcccgaa
     3721 cgaatcggac cacaccagta tcctgccgcc gtcccgaatc gcacgggcaa tcaggcggca
     3781 ggtgaaaatc ggaacttggg caacgtgcgt gtaaaaggtg gctttcggca tattgtttga
     3841 acatttggca ggataatgcc gtctgaaagg cttcagacgg cattgtggca aaattaaaga
     3901 ttccgcagat agttcagcag caagggaacg ggacggccgg tcgcaccttt ttccgcaccg
     3961 gatttccacg ccgtacccgc gatgtcaagg tgtgcccatg gatagtcttc ggtaaagtag
     4021 gataggaatg ttgcggcggt aatcgtgccc gcgccgggcg tgccgatgtt tggaatgtcg
     4081 gcaaagttgg atttgagttg gtctttgtag gtctcaaaga gcggcagttg ccacgctttg
     4141 tcgtccacgt tgtaggaagc ggcaagcagg ctgtcgacca aatcttgatt gttgcccatc
     4201 acgccgctga catcgtgccc caaggcaaca atacacgcac cggtcagggt ggcgacgtcg
     4261 atgacggctt tgggtttgaa ctgttcggcg taagtgagcg cgtcgcacaa aatcagacgg
     4321 ccttcagcat cggtgttcaa cacttcgatg gtcaggcctt tcatgctttt tacgacgtcg
     4381 cccggtttgt ttgccgcgcc ggaaggcata ttttcacaag tggcgacgac ggcaatcagg
     4441 ttaatcggca gttgcagttt gacggcggcg cagaaggtgc tgatgacggt tgccgcgccg
     4501 cacatatcaa acttcatttc gtccatgttc aggccgggtt tgagggaaat gccgccggtg
     4561 tcgaaggtaa tgcctttgcc gaccaatacc acaggcgcgg cttctttgtc cgccgcaccg
     4621 aaatagctca gttcgaccaa atagggatct tcgacactgc ctttggcgac cgaccaaaac
     4681 gaacccatgt tttctttgat gtagtctttt tcaatgattt tggcgtgtgc gcccaatttt
     4741 tcggcttcgg ccttggcggt gcgcgctaaa aattcgggcg tgcattcgtt cggcgcggca
     4801 ttgcccaagt cgcggcagag gctttgtccg taaacttgcg cttcggcgac gcgcaaggct
     4861 tctttaacgg cggcttcgtg tgcgctgtgg aacacggcag tttcaaattt ggcgggcttg
     4921 gcttcttttt tgtagcggtc gaaacggtag gcggcgttgc cgaacgcaat cgcaaacgct
     4981 tcggctacgg cggcggcttg cgcttcatcg aaggcatgga tgtccacatt gaccgtttcc
     5041 tgattttgcg cccatttggc ggcttcggcg gcggctttgt tcagcgcggc acggtcggtt
     5101 ttttcaaggc ggacgacggc gactgcctgc aaaccgttgc ctgtcgggat tttggtgtcg
     5161 gcaaaagttt gaccttcttc aagcgaagac aaaagggcaa gggcggtcgg atggtttaat
     5221 tgcgcctctt cggtgcagac aaataactgt gcgcctgcct gctgttcctg caagatttcg
     5281 gtttttgtgc taaattccac gtttattctc ctgattgaga cggttgtcgg tagttttcgg
     5341 acggcctttc gctcaaaaga ccgtctgaag acggctggca cgattgtacc ccatttgaag
     5401 caccgtctga aaccttgcgc ggacaatccg cctgcgccga accgcttacc gccccctgac
     5461 cgcgattcta tgatttatca aagaaacctc atcaaagaac tctcttttac cgccgtcggc
     5521 attttcgtcg tcctcttggc ggtattggtc tccacgcagg caatcaacct gctcggccgt
     5581 gccgccgacg ggcgtgtcgc catcgatgcc gtgttggcat tggtcggctt ctgggtcatc
     5641 ggtatgacgc cgcttttgct ggtgttgacc gcatttatca gtacattgac cgtgttgacc
     5701 cgctactggc gcgacagcga aatgtcggtc tggctatcct gcggattggc attgaaacaa
     5761 tggatacgcc cggtgatgca gtttgccgtg ccgtttgccg ttttggttgc cgtcatgcag
     5821 ctttgggtga taccgtgggc agagctacgc agccgcgaat acgctgaaat cctgaagcag
     5881 aagcaggaat tgtctttggt ggaggcaggc gggttcaaca gtttgggcaa gcgcaacggc
     5941 agggtttatt ttgtcgaaac cttcgatacc gaatccggca tcatgaaaaa cctgttcctg
     6001 cgcgaacagg acaaaaacgg cggcgacaac atcatcttcg ccaaagaagg taacttctcg
     6061 ctgaacgaca acaaacgcac gctcgaattg cgccacggct accgttacag cggcacgccc
     6121 ggacgcgccg actacaatca ggtttccttc caaaaactca acctgattat cagcaccacg
     6181 ccaaaactca tcgaccccgt ttcccaccgc cgtaccattc cgaccgccca actgattggc
     6241 agcagcaacc cgcaacatca ggcggaattg atgtggcgca tctcgctgac cgtcagcgtc
     6301 ctcctactct gcctgcttgc cgtgccgctt tcctatttca acccgcgcag cggacatacc
     6361 tacaatatct tgattgccat cggtttgttt ttaatttacc aaaacgggct gaccctgctt
     6421 tttgaagccg tggaagacgg caaaatccat ttttggctcg gactgctgcc tatgcacatc
     6481 atcatgttcg tcatcgcaat cgtacttctg cgcgtccgca gcatgcccag ccagcccttc
     6541 tggcaggcgg ttggcaaaag tctgacattg aaaggcggaa aatgaacctg atttcacgtt
     6601 acatcatccg tcaaatggcg gttatggcgg tttacgcgct ccttgccttc ctcgctttgt
     6661 acagcttttt tgaaatcctg tacgaaaccg gcaacctcgg caaaggcagt tacggcatat
     6721 gggaaatgct gggctacacc gccctcaaaa tgcccgcccg cgcctacgaa ctgatgcccc
     6781 tcgccgtcct tatcggcgga ctggtctctc tcagccagct tgccgccggc agcgaactgg
     6841 ccgtcatcaa agccagcggc atgagcacca aaaagctgct gttgattctg tcgcagttcg
     6901 gttttatttt tgctattgcc accgtcgcgc tcggcgaatg ggttgcgccc acactgagcc
     6961 aaaaagccga aaacatcaaa gccgccgcca ttaacggcaa aatcagcacc ggcaataccg
     7021 gcatttggct caaagaaaaa aacagcatta tcaacgtgcg cgaaatgttg cccgaccata
     7081 ccctgctggg cattaaaatc tgggcccgca acgataaaaa cgaactggca gaggcagtgg
     7141 aagccgattc cgccgttttg aacagcgacg gcagttggca gttgaaaaac atccgccgca
     7201 gcacgcttgg cgaagacaaa gtcgaggtct ctattgcggc tgaagaaaac tggccgattt
     7261 ccgtcaaacg caacctgatg gacgtattgc tcgtcaaacc cgaccaaatg tccgtcggcg
     7321 aactgaccac ctacatccgc cacctccaaa acaacagcca aaacacccga atctacgcca
     7381 tcgcatggtg gcgcaaattg gtttaccccg ccgcagcctg ggtgatggcg ctcgtcgcct
     7441 ttgcctttac cccgcaaacc acccgccacg gcaatatggg cttaaaactc ttcggcggca
     7501 tctgtctcgg attgctgttc caccttgccg gacggctctt cgggtttacc agccaactct
     7561 acggcatccc gcccttcctc gccggcgcac tgcccaccat agccttcgcc ttgctcgctg
     7621 tttggctgat acgcaaacag gaaaaacgtt gaaccaatgc cgtctgaacc tctcttcaga
     7681 cggcatttgt tttcattgac acattcccac agacagatag ccattcccta ttacattacc
     7741 tgtcataaca gttccatttt tgttaaaact agtctatgat agcggtacaa atattgttta
     7801 caatatttaa cgcaaatcat ttgcaacccg acaaaagaaa aacagaaaaa ggaacaaaga
     7861 gatgttagaa gcctatcgta aagccgccgc cgagcgcgcc gcccttggta ttcccgccct
     7921 tcctctgact gctcagcaaa ccgccgattt ggttgagctg ctgaaaagcc cgcccgcagg
     7981 cgaaggcgag ttcttggtcg aactgcttgc ccaccgtgtt ccgcccggtg tggacgatgc
     8041 cgccaaagtc aaagcctcat tcctggctgc cgttgccgaa ggcagcgcgt ccagcccgct
     8101 gatctccccc gaatatgcga ccgaactctt aggtacgatg ctcggcggtt acaatatcca
     8161 cgccttaatc gaactcttgg acgacgacaa actcgcgccc attgccgcca aaggcttgaa
     8221 acatacgctt ctgatgttcg attccttcca cgacgttcag gaaaaagccg aaaaaggcaa
     8281 caaatacgcg caagaagttt tgcaatcttg ggcagatgcc gaatggttcg cctcacgcgc
     8341 caaagttccc gaaaaaatca ccgttaccgt tttcaaagtt gacggcgaaa ccaatacaga
     8401 cgacctctcc cccgcgcccg acgcgtggag tcgtcccgat attccgctgc acgcgctggc
     8461 catgctgaaa aacccgcgcg acggcatcac gcccgacaaa ccgggcgaag tcggtccgat
     8521 taaattgttg gaagaactca aagccaaagg ccatccggtt gcttacgtcg gcgacgtggt
     8581 cggtactggt tcttcacgca aatccgcgac caactccgtc atttggcata ccggcgaaga
     8641 cattccgttc gtgccgaaca aacgcttcgg cggcgtatgt ttgggcggca aaatcgcgcc
     8701 gattttcttc aatacccaag aagattccgg cgcgctgccg attgaagtcg atgtatctgc
     8761 tctaaaaatg ggtgatgtcg tcgatatcct gccttatgaa ggcaaaatcg tgaaaaacgg
     8821 cgagactgtt gccgagtttg aattgaaatc acaagtattg ctggacgaag tgcaagccgg
     8881 cggccgtatc aacctgatta tcggccgagg tctgaccgcc aaagcgcgcg aagccctgaa
     8941 actgcctgcc tctactgcat tccgcctgcc gcaagcgcct gccgaaagca aagccggttt
     9001 caccttggcg caaaaaatgg tcggccgcgc ctgcggtctg cccgaaggac aaggcgtgcg
     9061 tccgggtact tactgcgaac cgcgtatgac gacggtcggc tcgcaagaca cgaccggccc
     9121 gatgacccgc gacgagttga aagacttggc ttgtttgggc ttctccgccg atatggtgat
     9181 gcagtctttc tgccacaccg ccgcctatcc gaaacctgtc gatgtaaaaa cccataaaga
     9241 actgcccgcc tttatttcca cccgtggcgg cgtgtcactg cgtccgggcg acggcgtcat
     9301 ccactcgtgg ctcaaccgcc tgctgctgcc cgataccgtc ggcactggcg gcgacagcca
     9361 tacccgtttc cccatcggta tttccttccc cgccggctcc ggcttggttg cctttgccgc
     9421 cgcaacgggc gtaatgccgc tcgatatgcc tgagtctgta ttggtacgct tcagcggcaa
     9481 gctgcaaccg ggcgtaaccc tgcgcgattt ggtgaacgcc atcccgctgt acgcaattaa
     9541 acaaggtttg ctgaccgttg ccaaagccgg taagaaaaac atcttctctg gccgcatcct
     9601 cgaaatcgaa ggcctgcccg atttgaaagt ggaacaagcc tttgaattga ccgacgcatc
     9661 cgccgaacgc tccgccgccg gctgtaccgt gaagctcaat aaagagccga ttatcgagta
     9721 catgaaatcc aacgtcgtgt tgatgaaaaa catgattgcc aacggctatc aagatccgcg
     9781 cactttggaa cgccgcatca aagctatgga aaaatggctg gcaaatcccg agttgctcga
     9841 agcggataaa gatgccgaat acgccgccgt gattgaaatc aacatggacg acatcaaaga
     9901 gccgattatc gcctgcccga acgatccgga cgacgtatgc ttcatgtccg aacgttccgg
     9961 caccaaaatc gacgaagtgt tcatcggttc gtgcatgacc aacatcggcc acttccgcgc
    10021 cgcttccaaa ctcttggaag gcaagagcga catccccgtc cgcttgtggg ttgcgccgcc
    10081 gaccaaaatg gacgcgaaag agttgtccga cgaaggccac tacggtgtgc tcggccgtgc
    10141 aggtgcgcgt atggaaatgc cgggttgctc attgtgtatg ggtaaccaag cccaagtaca
    10201 cgaaggcgca accgtcatgt ccacttcgac ccgcaacttc ccgaaccgct tgggcaaaaa
    10261 cacctttgtt tacctcggtt cggcggaatt ggcagcgatt tgctccaaac tgggtaaaat
    10321 cccgaccgtt gaagaatatc aagccaatat cggcatcatc aacgaacagg gcgataaaat
    10381 ctaccgctat atgaacttca acgaaatcga cagctacaac gaagtagccg agaccgtgaa
    10441 cgtttaatcc ccgtcatccg tatgaagtaa gggattgacc acaatgccgt ctgaacaacc
    10501 ttcagacggc attgcaacat tccgctaacc cttctttccg caaacgctgc aaatacggcg
    10561 ttcacgcccc cacataaagg aaacgacagt gaacctgaaa aaccgccatt ttctgaaact
    10621 tttagacttc acgccggaag aaatcaccgc ctacctcgac cttgccgccg aattgaaagc
    10681 cgccaaaaaa gcagggcgcg agattcagcg gatgaaaggg aaaaacatcg ccctgatttt
    10741 tgaaaaaacc tctactcgga cgcgctgcgc gtttgaagtc gccgcgcgcg atcaaggcgc
    10801 gggagtgact tatttagagc cgtccgccag ccaaatcggg cataaggaaa gcatcaaaga
    10861 caccgcccgc gtgttgggca ggatgtacga tgccatcgaa tatcgcggtt tcggtcagga
    10921 agttgttgaa gaattggcga aatacgcggg cgtacccgtg ttcaacgggc tgaccaacga
    10981 gttccatccc acacaaatgc ttgccgacgc actgactatg cgcgaacaca gcggcaaacc
    11041 tttgaaccaa accgcgtttg cctacgtcgg cgacgcgcgt tacaacatgg gcaattccct
    11101 gctgatttta ggggcaaaat tggggatgga cgtgcgtatc ggcgcaccgc aaagcctgtg
    11161 gccgtctgaa ggcattattg ccgccgcaca cgccgccgcc aaagaaaccg gcgcaaaaat
    11221 taccctgacc gaaaacgcgc atgaagccgt gaagaatgtt gattttattc ataccgatgt
    11281 gtgggtcagc atgggcgagc cgaaagaagt ctggcaggaa cgcatcgatt tgctgaaaga
    11341 ttaccgcgtt acgcccgaac tgatggcggc atcgggcaat ccgcaagtca aattcatgca
    11401 ctgcctgccc gccttccaca accgcgaaac caaagtcggc gaatggattt acgaaacctt
    11461 cgggctgaac ggtgtggaag ttacagaaga agtattcgaa agccccgcca gcatcgtgtt
    11521 cgatcaggcg gaaaaccgta tgcacacgat taaagcggta atggtcgcgg ctttgggcga
    11581 ctgacagaac tgtgcctgtt taaattcatc cgcaacacag ataccgtctg aacacgatgt
    11641 tcagacggta tccat
//
LOCUS       DAXHNP010000053        11608 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.053, whole genome shotgun sequence.
ACCESSION   DAXHNP010000053 DAXHNP010000000
VERSION     DAXHNP010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11608
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.053"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(175..867)
                     /locus_tag="ACFM5C_001029"
     CDS             complement(175..867)
                     /locus_tag="ACFM5C_001029"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6068754.1"
                     /translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
                     QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
                     SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
                     CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
                     LKAHGRELFVLG"
     gene            complement(975..2168)
                     /locus_tag="ACFM5C_001030"
     CDS             complement(975..2168)
                     /locus_tag="ACFM5C_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6068755.1"
                     /translation="MSNQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
                     VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIMMGGLAFNIGNV
                     GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
                     WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
                     VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
                     IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
                     VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
                     GGLFG"
     gene            complement(2297..3034)
                     /gene="pxpA"
                     /locus_tag="ACFM5C_001031"
     CDS             complement(2297..3034)
                     /gene="pxpA"
                     /locus_tag="ACFM5C_001031"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HFC6068756.1"
                     /translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
                     LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
                     YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
                     FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICL
                     HGDGPHAVVFAEKIRQELLAAGIKVSA"
     gene            complement(3021..3950)
                     /locus_tag="ACFM5C_001032"
     CDS             complement(3021..3950)
                     /locus_tag="ACFM5C_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFC6068757.1"
                     /translation="MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILL
                     GNDEGTAAIEIALGGIMLVFERDTPFCLTGAVYQAELDGEPVYSYWRYTARKGQTLKM
                     VRAVQGMYGYVCVAGGFDVPEVMGSRSTDLKAGFGGHQGRMLQKGDYLPIGKGAQELS
                     KVGIAPIPFTDTVHLVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLS
                     QPLEMLSHAVQAGTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSK
                     VKFKIIGLKEATALRRKNQAYLNQIRRITHEAG"
     gene            complement(3947..4594)
                     /gene="pxpB"
                     /locus_tag="ACFM5C_001033"
     CDS             complement(3947..4594)
                     /gene="pxpB"
                     /locus_tag="ACFM5C_001033"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFC6068758.1"
                     /translation="MRIEITPISESALVCRLNAPSELGKQQKLWAFAAALGQHDRIEE
                     VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
                     VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
                     VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
     gene            4778..6985
                     /gene="uvrD"
                     /locus_tag="ACFM5C_001034"
     CDS             4778..6985
                     /gene="uvrD"
                     /locus_tag="ACFM5C_001034"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HFC6068759.1"
                     /translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
                     TRIAWLLQTGQASVHSIMAVTFTNKAAKEMQTRLGAMIPVDVRAMWLGTFHGLCHRFL
                     RLHHRDAGLPSSFQILDGGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
                     SVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYEMLQSNEILRQHYQNRFN
                     HILVDEFQDTNKLQYAWLKLMAGGNAAVFAVGDDDQSIYRFRGANVGNMTALMEEFHI
                     NAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAR
                     FIVDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGLRFYERQEIK
                     HALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAK
                     ATKIAAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELV
                     NAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
                     AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
                     LHGQTQFGIVSRFVEEIPPEVLHYLSVKKTAYDSYGSPRQTAASKDKIIDDYKQPQTY
                     AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEAM"
     gene            7342..7881
                     /locus_tag="ACFM5C_001035"
     CDS             7342..7881
                     /locus_tag="ACFM5C_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6068760.1"
                     /translation="MSQVFKDFDLSSVWESDSWADENYKEAPFTPEILAAVESELGYK
                     LPQSFIELMAVQNGGIFVKNCFPTTQRNSWAKDHVQICEVSGIGFEKEGSLCGETGQK
                     LWMEEWEYPPIGVYFANDPSGGHAMFALDYRECGKDGEPKVVFVEQESDFEIVELAPD
                     FETFIRSLRHEDEFIDEEI"
     gene            complement(8122..8283)
                     /locus_tag="ACFM5C_001036"
     CDS             complement(8122..8283)
                     /locus_tag="ACFM5C_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068761.1"
                     /translation="MNIINYKGDDIIISLTREELQLLRSLVIEIYAGVCIDAEEFEIV
                     SGIRNPKLV"
     gene            complement(8407..8766)
                     /locus_tag="ACFM5C_001037"
     CDS             complement(8407..8766)
                     /locus_tag="ACFM5C_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 8 family protein"
                     /protein_id="HFC6068762.1"
                     /translation="MIKLDLKSINLYDIDFEKFTPEIPDNFHRWIDLDIGIEGEQGSS
                     IFSLCICSPKWISHHCNKEGFFWSNALILEQFDHKIIKSEIDKILEYCSKETWDLTLS
                     NLLRFFSWEFEDYNPNT"
     gene            8819..9196
                     /locus_tag="ACFM5C_001038"
     CDS             8819..9196
                     /locus_tag="ACFM5C_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6068763.1"
                     /translation="MRKSRLSRYKQNKLIELFVAGVTARTATEPDSIVYTDCYRSYDV
                     LDVSEFSHFRINHSTHFAERQNHINGIENFWNRAKRHLRKFNGIPKAHFELYLKECEW
                     RFNNSEIKVQISILKQLVKSSLS"
     gene            9395..10015
                     /locus_tag="ACFM5C_001039"
     CDS             9395..10015
                     /locus_tag="ACFM5C_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6068764.1"
                     /translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
                     ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
                     LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
                     LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
     gene            10038..11489
                     /locus_tag="ACFM5C_001040"
     CDS             10038..11489
                     /locus_tag="ACFM5C_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6068765.1"
                     /translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
                     VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
                     AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
                     LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
                     KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
                     STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
                     RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLTPDGIVMFNTTHSPHAFATA
                     VHSIPYAYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
                     VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
BASE COUNT         2844 a         3073 c         2839 g         2852 t
ORIGIN      
        1 cctctttcag ttacagcagc ttgatccctt tcccttatcc aacgggggaa ggctaggata
       61 gggtggcttg caaatataca gaacaaggga caagagccac cctctctcca accctctccc
      121 tccgtacggg agggggtgga ttctcgcggg cgaagcccac gctacggtta gcctttaccc
      181 cagcacaaac aattcccgcc cgtgcgcctt cagccaactt ttagcattgt cggtatgcgg
      241 cgtcagcgtg ttcaccaaat gccaaaagcg cggactgtgg tcggggtggc ggaggtggca
      301 gagttcgtgg atgcagacat agtcggcgac gtattcgggc gtgccgatca gccgccagtt
      361 gaggcggatg ccggtgtgcg ggcggcatac gccccaaaag gttttggcgt tgctcaggtc
      421 tgtggcggtg ggcgtcagtc ctgtttcggc tgcgtgtttt tcaaggcggg gcagcaggta
      481 ttcgcgggcg cgttcgttca acaggcggcg caggtggtcg atttgtgcgg cggtttcttt
      541 tcggggaagc aggatttcag acgacgtgat acggatatgg ctttggctgt gggtatccag
      601 cttggtcttt attccccgat accaaatcca ctcgggtaag tttgggtggg aaacaggatg
      661 cacgggcgtt ttggcaagcg tgttccgcaa aatcgtttcg tttgccgcca gccagtttgc
      721 taacgcgtgg tcttgaaaaa agggtgggac gttgatgctg accgtctgca tattgacggg
      781 gcgcagaatc agatttttct tggcactgcg tttgagttcg atttcgatgc acaaaccgtc
      841 ggaaagagta taggtgaagc gtttcatagt tgtgaatggg tttcagaccg gatacatcgt
      901 ctgaaacagg aattttccat atcaggcggc aaacttcgga taatatacaa aatcaaacat
      961 ctgcgctaca aggttcagcc gaacaagccg ccgatatatt tgctgatggt gatggcgctg
     1021 agtactgcca tcaaaccgac cacaatcacg ccggaaacgg tgagccacag cgggtgtttg
     1081 tagtcgccga caattttggt tttgtaggcg gcaatcagaa tcagaccgag ggaaatcggt
     1141 aaaatcaggc cgtttaatgc gcctacgaac accagcacct gcgccggttt gccgatggtg
     1201 gaaaatacgg cggtggacac ggcgataaag gcaataatcc atttgttttt attgcgttcg
     1261 atagacgggc tgagaccgga gaagaacgac accgaagtat aagccgcacc aatcaccgaa
     1321 gtaatcgaag ccgcccaaat caccacgccg aaaatcagca ggccgatgta tcccgccgca
     1381 tattcaaacg gtgtggaagc agggttgtcg ggattgagct gtacgccttg gctgaccacg
     1441 cccaaaaccg ccaaaaacaa tacaatccgc ataatcgagg caatcaggat cgcccgcacc
     1501 gagctttggc tcacttccgg caacgccgat ttgcctttga tgcctgcgtc cagcagacgg
     1561 tgcgcaccgg cgaaggtgat gtagccgccg accgtgccgc ccaccagtgt aacaatcgcc
     1621 attgcatcga gtttttccgg cataaaggta tgcacggcgg catctgccag cggcggattc
     1681 gcctgccatg ccacataaac cgtcagcgca atcattacga aacccatcac ttgggcgaat
     1741 ttgtccatca ctttgcctgc ttctttaaac agaaacacac cgatggcaat cacgccgctg
     1801 atcacggcac cggtttccgg cgacagtccg gtcagcaggt tcagacccaa gcctgcgccg
     1861 ccgacgttgc caatattgaa cgccaaaccg cccatcataa tcagcacagc caagaaatag
     1921 cctgcgccgg gcaagacctg attggcaata tcctgcgcct gtttttcgga aacggcgaca
     1981 atccgccaaa tattgagctg cgccccgatg tcgagcagaa tcgagagcag aatcacaaag
     2041 ccgaaacttg ccgccagtgc ttgggtgaag gtggcggttt gggtcagaaa gcccgggccg
     2101 atggcggaag tcgccatcag gaatgcagcg ccgattaagg catttctgcg gtttttttga
     2161 ttagacataa tcgcttatcc tctataaaat tggttgttgc tgtgtttggg cgaaacctgc
     2221 ggttttagct acgcagaaac tcgctttgct cgttttggcg aaacctgcgg ttttcagacg
     2281 gcctatgaac tgtttttcaa gcagaaactt tgatgcctgc cgccagtagt tcctgccgga
     2341 ttttttcggc aaacaccacg gcgtgcggcc cgtctccgtg cagacagatg ctgtcggctt
     2401 gcacggcaac caggctgccg tccactgctt tgacctgccc gtcccgcacc atctgcaata
     2461 cttgggcgat ggcttcttcg tcgctgtcca cctgcgcatc ggggcggctg cggggaacca
     2521 gcgtaccgtc gggcatatag cggcggtcgg cgaatacttc ggaaatcaca cccaagcctg
     2581 cggcttttcc ggcttccaag agcaggctgc cggaaagtgc catcaatttc aatttcgggt
     2641 cgaaatccgc cacaattcgg gcaacggtat ccgccagcgc acggtttttc gccgcttggt
     2701 tgtacattgc gccgtgcggt ttgacataag ccatttccaa accctgatca cggcacaagg
     2761 cctgcaatgc gcccaactgg taattcagac acgcccgcaa atcggcttcg gacagattca
     2821 tttcggtacg gccgaagttt tcccgatcgg gatagccggg gtgtgctccg atgcgcacgc
     2881 cgttttgttg ggcatacgcc aatgccgccc gaatatcggc aatgctgccg gcgtgttggg
     2941 cgcaggcgat gttggccgaa gtaatcagct gcaacaaggc ttcgtcgctg ccgcagcctt
     3001 cggcgagatc ggcgtttaaa tcaacctgct tcatgggtga ttctccgtat ttggttcaga
     3061 taggcttggt ttttgcgccg cagggcggtg gcttctttca agccgattat tttgaatttg
     3121 actttgctgc cgaagcgcac ctgtgccagc ctgcccaaat cggcggcggc aacggtagcg
     3181 attttcggat aaccgccggt ggtttgcgca tcggccagca ggataatcgg tttgccgccg
     3241 ggcggcacct gcacggttcc tgcctgaaca gcgtgggaca gcatttccaa aggttgcgac
     3301 agggtcagcg gctgtccgtc gaagcggtag cccatgcggt tgctatcgct ttgcagcgtc
     3361 cacgtttccc gttccagatt cagacgccct ttttcactga aagcggcata ttccgacgaa
     3421 ggaacaaggt ggacggtatc ggtaaacggt atcggggcaa tgccgacttt ggacaattcc
     3481 tgcgcacctt tgccgatggg gagataatcg cctttttgca gcattctgcc ctgatggccg
     3541 ccgaaaccgg ctttcaggtc ggtacttctc gaacccatca cttccggcac atcaaatccg
     3601 cccgccacgc acacatagcc gtacatgccc tgcacggcac gcaccatttt caaggtctgc
     3661 cctttgcggg cggtataacg ccaatacgaa tagaccggtt cgccgtccaa ttccgcctga
     3721 tacacggcac cggtgagaca aaacggcgta tcccgttcaa acaccagcat tatcccgccc
     3781 aaagcgattt cgattgcggc cgtgccttcg tcgttgccca ataaaatatt gcccgccgcc
     3841 aaagcaaccg tgtccatcgc accggcatga ccgatgccgt aacgccggtg tccgtagcgt
     3901 ccggtatcct gaatatgcgc cggtgcctgc actgccgaaa catgaatcat ggctcaatcc
     3961 tttctgcaac aaagcggact tggtcacccg ccgccagcag ggtcggcgga ttcaaatcgg
     4021 ctcggaacaa gggtaattcg gttctgccga taatctgcca gccgccgggc gaagcgaacg
     4081 gatacacacc ggtctgactg ccgccgatac cgaccgaacc ggcaggaacg gacgttctcg
     4141 gcacggcacg gcggggcgtg tgcaatgctt cgggcaagcc gcccagataa gggaaaccgg
     4201 gctggaagcc catcataaat acggtataag tttgcgccgt atggcggcgg acgatttcgg
     4261 aaataaccgt ctgatggaaa gcagcgactt ccgccaaatc cgggccgtat tcgccgccgt
     4321 agcagacggg aatttccacc agtttgccct gatggtctgt aacggcggtg tgttcccaca
     4381 catattgcaa ttcatcggca agcgtcgcca aatcggtatc gaaacgggta aacacggtca
     4441 gattgttcat gccgaccacc acttcctcaa tcctgtcgtg ctgcccgagc gcagcggcaa
     4501 acgcccacaa cttttgctgt ttgcccagtt cggaaggtgc attcagtcgg cagaccaaag
     4561 cggattcgct gattggtgtg atctctattc tcatttgttg ttcattttgg ttatgtttta
     4621 atgaatctat atgcaggggc ggcggtttgt caatatcttc tgtgctgcat catcaaaccg
     4681 tcgattggaa aagtgctgcc ctgccgctgc actttttcag acgaccttaa accgtttcta
     4741 ttaaaatagc gcattccact tttcagacgg catctctatg tttcccgacc aatccgcccc
     4801 caacctgctg caaggcttga atcccgaaca actttccgcc gtaacctggc cgccgcaatc
     4861 cgcccttgtg ctggcaggcg cgggcagcgg caaaacgcgc gtgctgacca cgcgtatcgc
     4921 atggcttttg caaaccggtc aggcaagcgt gcacagcatt atggcggtaa cgtttaccaa
     4981 caaagccgcc aaagaaatgc agacccgttt gggcgcgatg attcccgtcg acgtccgcgc
     5041 tatgtggctc ggcacgttcc acggcctctg ccaccgcttt ctacggctgc accaccgcga
     5101 tgccggtttg ccgtcttcct ttcaaatcct cgacggcggc gaccagcttt ccctcatcaa
     5161 acgcctgctc aaaagcctca acatcgccga agaaatcatc gcgccgcgtt cgctgcaagg
     5221 ctttatcaac gcgcaaaaag aatccggttt gcgcgcttcc gtcttgagtg cgcccgatcc
     5281 gcacacaagc cgcatgattg aatgctacgc cgaatacgac aaaatctgcc aacgcgaagg
     5341 cgtggtcgat tttgccgaac tcatgctccg cagctacgaa atgctgcaaa gcaacgaaat
     5401 cctgcgccag cattaccaaa accgcttcaa ccacattctc gtcgacgagt tccaagacac
     5461 caacaaactg caatacgcct ggctcaaact catggcgggc ggcaacgcgg cagtgtttgc
     5521 cgtcggcgac gacgaccaaa gcatctaccg cttccgtggc gcaaacgtcg gcaatatgac
     5581 cgcgctgatg gaagagttcc atatcaacgc gcccgtcaaa ctcgaacaaa actaccgctc
     5641 tgtcggcaac atccttgccg ccgccaatgc cgttatcgaa aacaacgacg aacgactcgg
     5701 caaaaacctg cgcaccgacg ccgaagcagg cgacaaaatt cgctactact ccgcctttac
     5761 cgacctcgaa gaagcccggt tcatcgtgga cgaaaccaaa gccctcgaac gcgaaggctg
     5821 ggatctggac gaaatcgccg tcctctaccg tagcaacgcc caatcccgcg ttatcgaaca
     5881 aagcctgttc cgcagcggca ttccctacaa aatctacggc ggcttgcgct tttacgaacg
     5941 ccaagaaatc aaacacgccc tcgcctacct gcgcctcgcc gtcaatcccg acgacgacaa
     6001 cgccctcttg cgcgtgatta acttcccacc gcgcggcatc ggcgcacgca ccatcgaaaa
     6061 ccttcagacg gcctcaaacg aacaaggcat caccctctgg caggcagcct gcaatgccgg
     6121 cgcaaaagcc accaaaatcg ccgccttcgt ccgcctgatt gaagccctgc gcaaccaagt
     6181 cggacaactg tccctgtccg aaatcatcgt cggcatcctc aaagacagtg gcttgaccga
     6241 acactaccgc acccaaaaag gcgacaacca agaccgtctc gacaaccttg acgaactcgt
     6301 caacgccgcc atcgagttca aaccagaaga cagcaacttt gaaaccctgc ctgaaaacat
     6361 ttcagacgac cccgccttcc ccatcctcgc cttcctcagc aacgccgccc tcgaatccgg
     6421 cgaaaaccaa gcaggcgcgg gcgaaaaagc cgtccaactc atgaccgtcc acgccgccaa
     6481 aggcttggaa ttcaacgccg tcttcctcac aggcatggaa gaaggccgct tccccagcga
     6541 aatgagcctc gccgaacgcg gcggcctcga agaagaacgc cgcctcatgt atgtcgccat
     6601 cacccgcgcc cgcaaacgcc tctacatcac catggcgcaa caacgcatgc tgcacggaca
     6661 aacccaattc ggcatcgtct cccgcttcgt cgaagagatc ccacccgaag tattgcacta
     6721 cctgtccgtc aaaaagaccg cctacgacag ctacggcagc ccgcgccaaa ccgccgcatc
     6781 caaagacaaa atcatcgacg actacaaaca gccccaaacc tacgcaggct tccgtatcgg
     6841 acaaaacgtc cgccacgcca aattcggcac cggcgtgatt atcgatgccg cagataaagg
     6901 cgaatccgcc cgactgacca tcaacttcgg caaacagggc gtgaaagagt tggataccaa
     6961 gtttgcgaaa ttggaagcga tgtaaatttg aaatgcaggc tggatactcg tatccgacaa
     7021 aaatatttga cgcgtctatc gtttccgaaa aaccgctgtt ggaaaatgtc ggattcgaga
     7081 atccgaccta tggcaaaaaa ctgtagcaag gacaaggcaa aaggccgtct gaatccggta
     7141 acaacaaatt ttgccgaaac ctccgccgtc attcccgcgc aggcgggaat ccagaccttt
     7201 cggcacggga acttatcgga taaaaggttt ctttagattc cacgttctag attcccgcct
     7261 gcgcgggaat gacggacggt aaaagccggg tatagatacc taacccttgt ttatagctga
     7321 aaatcaataa ggaagaacat tatgtcccaa gtttttaaag attttgattt gtcctccgta
     7381 tgggaatccg acagttgggc agatgaaaac tacaaagaag ccccgtttac ccctgaaatt
     7441 ttggctgccg tagaaagtga actgggctat aaattgccgc aaagttttat tgaattgatg
     7501 gcggtacaaa acggcggaat atttgtcaaa aactgttttc cgaccacaca gagaaattcg
     7561 tgggcgaaag atcatgtgca aatttgcgag gtatcgggca tcggctttga aaaagaaggg
     7621 agtttgtgcg gcgaaacagg gcaaaaactt tggatggaag aatgggaata tccgcccatc
     7681 ggcgtgtatt ttgccaacga cccgtcaggc ggtcatgcca tgtttgcctt ggactatcgg
     7741 gagtgtggaa aagacggcga gccgaaagtg gtgtttgtcg agcaagaatc ggattttgaa
     7801 atcgtcgaac ttgcccccga ttttgaaacc tttatccgca gcttgcggca tgaagatgag
     7861 tttattgacg aggaaatata aaacggcggt tgaaaaaccg gaatcatcaa gggaaaacgg
     7921 gcgaaataac ggataatcgc ttgaatccgt aaggaaaacg gtttggtgga acgcgccatc
     7981 caagaccttt gcaaaaaact gtccccgaca gcattgacat tattaacaga acttatcaat
     8041 tttggagcta tctcaaatat aattcggtta tcctgttgta tccattaaat catatgcttc
     8101 aattaattgt tgttctagct cttataccaa ttttggattg cgaattcctg acacaatctc
     8161 aaattcttct gcatctatgc aaacacctgc ataaatttca ataacaaggg aacgcaataa
     8221 ttgaagctct tctcttgtta aagaaataat aatgtcatca cctttgtaat tgattatatt
     8281 cataataatt ttatttttgt ttgtcaaagt aagttttgcc taaggttggt ctaaatgcag
     8341 ttccaccatc ttttgaattt gggtctctga ttacaattgc tccagactta tcatcccaaa
     8401 ttgctcttat gtgtttggat tgtaatcttc gaattcccaa gaaaaaaatc gtaataagtt
     8461 tgaaagtgtc aaatcccaag tttcttttga gcaatattct aatattttat caatttcact
     8521 tttaataatc ttatgatcaa actgttctaa tattaatgca ttagaccaaa aaaaaccttc
     8581 tttattacaa tgatgggaaa tccatttagg agaacaaatg caaagtgaaa aaatagatga
     8641 gccttgttct ccttcgattc cgatatccaa atctatccat ctatggaaat tatctggaat
     8701 ttcgggggta aatttttcaa aatcaatatc atataaattt atgcttttta aatccaattt
     8761 aatcattagg gctgtcctag ataaataggg aaattcaaat taagttagaa ttatccctat
     8821 gagaaaaagt cgtctaagcc ggtataaaca aaataaactc attgagctat ttgtcgcagg
     8881 tgtaactgca agaacagcaa cagagcccga cagcattgtt tatacggatt gttatcgtag
     8941 ctatgatgta ttagatgtga gcgaatttag ccatttccgt atcaatcaca gcacacattt
     9001 tgctgaacga caaaaccata ttaatggaat tgagaacttt tggaaccggg caaaacgtca
     9061 tttacgcaag tttaacggca ttcccaaagc gcattttgag ctgtatttaa aggagtgcga
     9121 atggcgtttt aacaacagtg agataaaagt tcaaatttcc attttaaaac aattagtaaa
     9181 atcgagttta tcttagttgt ccaggacagc cccattattt ttataacacc gtgaagccgc
     9241 acagcagttt gaacagtgat acgccgtttg cgggcttacg agtttatttt cccggcctgc
     9301 agtttgagca atacggtgat ttcctacggt taatacaaat gtttacacat tgatacattt
     9361 catttatagt tccgcctatt tgaaaataga aaatatgaat tcgaccgcaa gtaaaaccct
     9421 gaaaggattg tcgctggtgt ttttcgcctc tggattctgc gccctgattt accaggtcag
     9481 ctggcagagg cttctattca gtcacatagg tatcgatttg agttcgatta ctgtcattat
     9541 ttctgtattt atggtcggct tgggtgtagg tgcgtatttc ggtggacgca ttgctgaccg
     9601 ttttccttca agtatcatcc ccctgttttg catcgctgaa gtatccatcg gtctgttcgg
     9661 tttggtaagc aggggtctga tttccggctt ggggcatctt ttagttgagg ctgatttgcc
     9721 catcatcgct gctgccaatt tcctcttatt gctgcttcct acctttatga tgggcgcgac
     9781 cttgcccttg ctgacctgtt tttttaaccg gaaaatacat aatgttggcg agtctatcgg
     9841 taccttatat tttttcaaca ctttgggtgc ggcactcgga tcgcttgccg ccgccgaatt
     9901 tttctacgtc ttttttaccc tctcccaaac cattgcgctg acagcctgct ttaaccttct
     9961 gattgctgct tcagtatggc tgcgttacag aaaggatgga tatagtgaac actaaaccga
    10021 atactagttt gatttatatg ctttctttcc ttagcggctt attgagcttg ggtatagaag
    10081 tcttgtgggt aaggatgttt tcgttcgcag cacagtccgt gcctcaggca ttttcattta
    10141 ctcttgcctg ttttctgacc ggtatcgccg tcggcgcgta ttttggcaaa cggatttgcc
    10201 gcagccgctt tgttgatatt ccctttatcg ggcagtgctt cttgtgggcg ggtattgccg
    10261 actttttgat tttgggtgct gcgtggttgt tgacgggttt ttccggcttc gtccaccacg
    10321 ccggtatctt cattaccctg tctgccgtcg tcagagggtt gattttcccg ctcgtacacc
    10381 atgtgggtac ggatggcaac aaatccggac gacaggtttc caatgtttat ttcgccaacg
    10441 ttgccggcag tgcattgggt ccggtcctta tcggctttgt gatacttgat ttcttgtcca
    10501 cccaacagat ttacctgctc atctgtttga tttctgctgc tgtccctttg ttttgtacac
    10561 tgttccaaaa aagtctccga ctgaatgcag tgtcggtagc agtttcccta atgttcggca
    10621 tcctcatgtt cctactgccg gattctgtct ttcaaaatat tgctgaccgt ccggataggc
    10681 tgattgaaaa caaacacggc attgttgcgg tttaccatag agatggtgat aaggttgttt
    10741 atggggcgaa tgtatacgac ggcgcataca ataccgatgt attcaatagt gtcaacggca
    10801 tcgaacgtgc ctatctgcta ccctccctga agtctggcat acgccgcatt ttcgtcgttg
    10861 gattgagtac aggttcgtgg gcgcgcgtct tgtctgccat tccggaaatg cagtcgatga
    10921 ttgttgcgga aatcaatccg gcataccgta gccttatcgc ggacgagccg caaatcgccc
    10981 cgcttttgca ggacaaacgt gttgaaattg tattggatga cggtaggaaa tggctgcgtc
    11041 gccatcctga tgaaaaattc gacctgattt tgatgaatac gacttggtac tggcgtgcct
    11101 attccaccaa cctgttgagt gcggaatttt taaaacaggt gcaaagccac cttaccccgg
    11161 atggtattgt aatgtttaat accacgcaca gcccgcatgc ttttgctacc gccgtacaca
    11221 gtattcccta tgcataccgc tatgggcata tggtagtcgg ctcggcaacc ccggtagttt
    11281 tccctaataa agaactgctc aagcaacgtc tctcccggtt gatttggccg gaaagcggca
    11341 ggcacgtatt tgacagcagc accgtggatg ctgcagcaca aaaggttgtc tctcgtatgc
    11401 tgattcagat gacggaacct tcggctgggg cggaagtcat taccgacgat aatatgattg
    11461 tagaatacaa atacggcaga gggatttaac cgtcttaaag ggtttcaggc aacgcaggtt
    11521 ttaggtaacg tcctgctagt tcaaaaaaac cgcatcacag cagtcgggac aaaatggttt
    11581 aaacattttg tcccgaattc ttattcct
//
LOCUS       DAXHNP010000054        11566 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.054, whole genome shotgun sequence.
ACCESSION   DAXHNP010000054 DAXHNP010000000
VERSION     DAXHNP010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11566
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.054"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(132..1424)
                     /locus_tag="ACFM5C_001041"
     CDS             complement(132..1424)
                     /locus_tag="ACFM5C_001041"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFC6068766.1"
                     /translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIASTERTERVRPQRV
                     EQNLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
                     HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
                     RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLMYDSLYFHGQQ
                     VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGRVLQEKGGFNIEPLVYTR
                     ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
                     NGVETLYAHLSAFSQAEGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
                     PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
     gene            1502..2470
                     /locus_tag="ACFM5C_001042"
     CDS             1502..2470
                     /locus_tag="ACFM5C_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068767.1"
                     /translation="MKLTLALPSLNLDEDEIRIPLCLPAFNKILQYGSLHRQSCTASA
                     FYARYLWCGRLAERAAQSLNMPSEAVALATPVWQKMGMHQANVLTAEYLNVGTDEAER
                     LCRDLSAFYGDIPWRFVPVLPELWLVSLPCAYRWGAKPVLDLGGLLGADDQPDGEDAL
                     EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDGTNGGAQGGTLFADTVWSRFH
                     PDRRALPDNFRAYEETAAHLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
                     LYEAVRTGKIKRLDITTDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
     gene            complement(2671..4137)
                     /locus_tag="ACFM5C_001043"
     CDS             complement(2671..4137)
                     /locus_tag="ACFM5C_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6068768.1"
                     /translation="MVIFYFCGKTFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
                     EFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKSPELLSRAMYSAVVSNNIAGI
                     RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
                     ALFEDRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
                     NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
                     NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
                     SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
                     GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
                     HFKGITPRLTLSHRETWSNDVFNEYEKNRAFVEFNKTF"
     gene            complement(4379..6464)
                     /locus_tag="ACFM5C_001044"
                     /pseudo
     CDS             complement(4379..6464)
                     /locus_tag="ACFM5C_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374912.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(7428..7673)
                     /locus_tag="ACFM5C_001045"
     CDS             complement(7428..7673)
                     /locus_tag="ACFM5C_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068769.1"
                     /translation="MLKSIELNSHIRNRLAEYLKGRGMDFQTAMQEEKGNKEIAAIVH
                     SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
     gene            7785..8213
                     /locus_tag="ACFM5C_001046"
     CDS             7785..8213
                     /locus_tag="ACFM5C_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HFC6068770.1"
                     /translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYV
                     RLSGMAVRLYRFMSPLGFGAVVFGAAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
                     LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
     gene            8225..8701
                     /locus_tag="ACFM5C_001047"
     CDS             8225..8701
                     /locus_tag="ACFM5C_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HFC6068771.1"
                     /translation="MPIEIERRFLIGNDNWRQYADEPLLLRQGYLSVEKERTVRVRIA
                     GKQAWLTLKGYISEISRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
                     VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
     gene            complement(9051..9539)
                     /locus_tag="ACFM5C_001048"
     CDS             complement(9051..9539)
                     /locus_tag="ACFM5C_001048"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HFC6068772.1"
                     /translation="MLKITLIAACAENLCIGAGNAMPWHIPEDFAFFKAYTLGKPVIM
                     GRKTWESLPVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
                     IYGQAMPLATDLRITEVDLSVEGDAFFPAIDRTHWKEAERTERRVSSKGTRYAFVHYL
                     RY"
     gene            complement(9607..10662)
                     /gene="aroG"
                     /locus_tag="ACFM5C_001049"
     CDS             complement(9607..10662)
                     /gene="aroG"
                     /locus_tag="ACFM5C_001049"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HFC6068773.1"
                     /translation="MTHHYPTDDIKIKEVKELLPPIAHLYELPISKEASGLVHRTRQE
                     ISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRT
                     TVGWKGLINDPHLDGTFDINFGLRQARSLLLSLNNMGMPASTEFLDMITPQYYADLIS
                     WGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAG
                     HSAIVHTGGNPDCHVILRGGKEPNYDAGHVSEAAEQLRAAGVTDKLMIDCSHANSRKD
                     YTRQMEVAQDIAAQLEQDGSNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEE
                     LLALLAGANKKRMARAG"
     gene            complement(10824..11051)
                     /locus_tag="ACFM5C_001050"
     CDS             complement(10824..11051)
                     /locus_tag="ACFM5C_001050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068774.1"
                     /translation="MGNTRIPIKSFFKQLVLFVFNIFLAYEILPDVQAESAAGCPVPD
                     CRGNGKTDVPCGFVRMNGGYCFYQSVSFSLE"
     gene            11329..>11566
                     /locus_tag="ACFM5C_001051"
     CDS             11329..>11566
                     /locus_tag="ACFM5C_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068775.1"
                     /translation="MTTQMGASRDVSKSAKGWSVGIGLNVGKQLTDSVGLEFDPYYRH
                     KTIYKPREIVLDGDKTKMGRSKSNEYGFRVAATFY"
BASE COUNT         2629 a         3231 c         2834 g         2872 t
ORIGIN      
        1 cttagagaat cgttctcttt gagctaaggc gaggcaacgc cgtactgatt tttgttaatc
       61 cactataaat gccgtctgaa aacctgtttg caggttttca gacggcattg ttttcgtcgc
      121 cggttcaaac ttcaatccga ttgcgacacg gtaaccggta tgccgcgcaa gcgcgcaagc
      181 agcgcgtccg ccttctgttt ctgcgcggca aacgccgcct tgtccgcctg cgtcaattcc
      241 ggtgtcggca atgcgaccga aacaggattg acgggctgcc cgttgatgcg cgcctcgtaa
      301 tgcaggtgcg gcccggtcga acgcccggtc gaaccgacaa aaccgatgac ctcgccgccg
      361 cgcacattgc cttccgcctg cgaaaacgcg ctcaagtgcg cgtacagcgt ttccacaccg
      421 ttggcgtggc gtatcatcac cgcgttgccg tatccgccct tccggccttt aaaggtaatc
      481 acgccgtcgg cggaagccct gaccggcgtt ccctgcggtg cggcataatc gatgcctgtg
      541 tgcagccgcc atgtgtgcag gatggggtgc atacggtagc cgaacggcga agaaatgcgc
      601 gtatagacca gcggctcgat gttgaagccg cctttttcct gcaacaccct gccgtcttca
      661 tcataataat tgccgccccc tccgccttcc ttgtccgaac ggtaatagaa tgcctgatgc
      721 cttgtgccgc ccttaacgac ttcagccgcc aaaatatcgc ccgccgccac ctgctgcccg
      781 tggaaataca ggctgtcgta catcaggcgc acggcatcgc cttccttcaa accgtcaagg
      841 ctgaagcggc cggcgaaaat cccgcttaag gattcgcgga tttcgacggg cacttccgcc
      901 cgcgccagcg aaccgcgcgc cgacgttttg accacgaccg aacgcagcgt cggcaaaacc
      961 ttcatatccg cctcagaagc cgaccgccgc catatgccgc ctttcttttc caaagcgacc
     1021 agattgcgct cgccgtcttc gtcggtaaaa aactgcactt cgcgcgcgcc gccgtcgccg
     1081 ccgaccaaaa catgaaccga ctggtcggca cgcaaatgcc gcaaatcggc ttcgccgcca
     1141 tatttttccg tgattcgggc aatctcgtcc cgcgccatac ccgaacgcgc cagcacgtcc
     1201 gccagcgagt cgcccggctg caccgcctcc tgcacccaat atgccgtctg aacgccgctg
     1261 ccgccccaag acagcggcgg cagattttgt tccacgcgct gcggtctgac gcgctccgtc
     1321 ctctctgtcg aagcaatgta tgccgccgac accaaaataa tcgaaacggc aagcgcacgc
     1381 agcgcgtatt tccgatgttt tgccgaaagt gggaagacag ccatattgtt cctttttgac
     1441 ggcgtttgcg ccgaatcctc tataatgttg cgcctgacct gcatttctga aacgtcaaac
     1501 gatgaaactc accctcgccc tcccctcgct caatttggat gaagacgaaa tccgaatacc
     1561 tctatgcctg cccgccttca acaaaatcct gcaatacggc tcgctgcacc gccaaagctg
     1621 cacggcttcg gcattttacg cgcgttattt gtggtgcggc agactggcgg aacgcgcggc
     1681 gcaaagcctg aatatgccgt ctgaagccgt cgcgctcgcc acgcccgtct ggcaaaagat
     1741 ggggatgcat caggcaaatg tgctaacggc ggaatatctg aacgtcggta cggatgaagc
     1801 ggaacggctc tgccgcgacc tgtcggcgtt ttacggcgac attccatggc gtttcgttcc
     1861 cgtcctgccc gaattatggc tggtttccct tccttgcgcg taccgctggg gcgcgaagcc
     1921 cgttttggac ttgggcggat tgttgggcgc ggacgatcag ccggacggag aagatgcgtt
     1981 ggaatggctg cgcgtccaaa ccgaaatcca aatgtggctg gcggcgcacc ccgtcaacca
     2041 taaccgcaaa aaacgcgggc tgcccgagtt gaacggctta tggctttggg acggcacaaa
     2101 cggcggcgcg caaggcggca cacttttcgc cgatacggtt tggagccgtt tccaccccga
     2161 ccgccgcgca ttgcccgaca acttccgcgc ctatgaagaa acggcggcac acctgcctga
     2221 cacgcaccat atcctgttta tggacgattt gcgcctgacc gccctgacag gggacaggga
     2281 gcggtatgcg gcaatattgc agcagtggga agaacgctgg ttcgcaccgc tttacgaagc
     2341 cgtccgtacc ggcaaaatca aacggctgga catcaccacg gacggacaac acggcggtac
     2401 gctgaccttc aaacccgccg acaggtggaa attttggcgc ggcgcgaaaa cctttgacgg
     2461 aatctggtga acccgcctgc cgcaaccgcg acaatgccgt ctgaagcccg aatcgggttt
     2521 cagacggcat tttacctcgc atcgccgtta tgccggaaaa accggaatgc gtttccgcac
     2581 acgcggcggc acgcaaagca ccgcccgaaa gccgccgatg cccgccgtga taccgccgcc
     2641 ggcagggttt cctccgaaaa ggaacagcaa tcagaacgtt ttattaaact cgacaaacgc
     2701 ccgatttttc tcatattcgt tgaacacatc gttactccac gtttcgcggt gcgacagcgt
     2761 caggcgcggc gtgatgcctt tgaaatgcaa tgcccggtgc caaaggctca aggatgtgtt
     2821 caattcttta tccctgcgcc tttccccttt aaaaccgctg aaaaagccgg gtttttcata
     2881 atgccgtttc gccgcgccga ggcgcaacag cgaagacagg ccgctgccgc cccattcctg
     2941 cccccaggca aagcgcaggc cgtaacggtt gaaattgtcg ccccggtcgg cggggttgcg
     3001 ctcgcggtaa aaatccaaac cgcccatcca atattggcgc gcattccggt aaaacaccag
     3061 cgaattggaa atttgcaaat gggtattgtc ggaacgcgcc cggcgcgtat tcttcaaacg
     3121 cccccactcc gccgaagaca acgtttgcca tttcggggtt tgccaacggt tgaaataaag
     3181 gcgtgcgccg ttggtgtaag aataagcgtc gttgccgtag gtgcggcgtt cgtggaacac
     3241 tgccagcccg gcatctttgc gccggtcggc aaaaccgatg ccgccggaaa cgcctgccgt
     3301 catatcgttg aatttcttat tccccggata aaccctgccg gacacgtcgc cgcccgccgt
     3361 cgtgtaccag ccgtttttca gcgaccattt tttctccgcg ccgagccggt aattgaccgc
     3421 cgtgccgtcc acctgtttcg ggaaagtcca tttgccgtac tgctgccgtt tcggggcttg
     3481 gttgatattg tgttcgcggg taacgctgaa gccgccgttt accttccacg catcgcgttc
     3541 gcgcaatgcc ttgcggtaca gctcgacctg ctccatcagc tgcggcggca ggttttccgc
     3601 cttcaggcgg tcgaactggt ctgccgccgc ctcgttctgc ctgtcttcaa acaatgctgc
     3661 cgccaaacgc atacggacgg cgggcgcgtc gggttgggcg gcaatcaatt cccggtaatg
     3721 ggaaatcgcc tccttcaccc taccgtctgc ctgcgccaaa atcccttgtg cataaagtgc
     3781 caacatctta tcctgctgcg cctgttgtag gtaaatcggc aaaataacgc ggataccggc
     3841 aatattgttt gagaccactg cggaatacat cgcgcgggac aacaattcgg gacttttcag
     3901 cagggtttct ccgtcaatct gcaaaacttt tcctttttcc cgcacctgcc ccggtacctt
     3961 ctccctgtcg attggtttga cctccgcttc atgaagcctg aactcgggac ggcttctcaa
     4021 atccggttcg cgcggtgttt cttcggcata tgccgcactt gccaataaag gcagcagcag
     4081 catccatctg tttcgtgcag gcataaatgt cttcccacaa aaataaaaaa taaccattat
     4141 caatcggcgg attgtatcag ttttttatgc cgctgttcca aaccctgccg cccgatgccg
     4201 cgacaatgcc gtctgaagcc agaatcgggt ttcaaacggc ggcaaaaaac cggcggtttt
     4261 ccgccggttt catcattatg ccccgccctt cggggcagca gggttcggat tggtttgcgg
     4321 ggcggcgtgc ggtgccgtgc cggtgtgccg cctgtacgtc aaaacatttc ccgacgcatc
     4381 aaaacagcca tttgagcgac aatgcggctt ctttgtcgcc gtccgtcctt ttgccgtatc
     4441 cgatgcgtgc ggacatatga cctttccaac cggcttcaat gccgaaccgc ccttcgagcg
     4501 ccgtcctgcc tgccagcgtc tgtttttcgc cgtccatttc cacgccgaaa gattttgacc
     4561 tgtgcaaaac attaaaagcg gcaaaaggct gaagattgac accattacgc aaagcaaaac
     4621 ggttttttgc ccgaatgccg gcgcggcttt gccactgacc gctgccgagc agtccgaccc
     4681 ccgtcccctc gctgtcggta aagccgccgt ttacgcccaa gtaggtaaac tgcgcctgcg
     4741 gttgcaggta aaaccgcaca ttattgcctt ttccgacaac gccttccgcc acaagcgtgt
     4801 tgtagccgcc ttcgacagaa gccgtccaac ctttggtttt gtagcgttcc gcacggtttt
     4861 catcattgat gcggtgtttg aaacgttggt attgcaacca gccgtccaaa tacgcacccg
     4921 tttgtttatc gcgcaactga tgccacgcag cataaacacc cccgccataa ccatgcaaat
     4981 cactgcctgc cgcaccgcct ttgctgttaa ctgatgcgtg ctggccgacc ctgccgccca
     5041 tcacgccgat tgccagccgg ctgccttcat tttgccgtac aaacacctcg ccgccgattt
     5101 gcacgccttt gcgccgcccg tccgcagccg cgccaccccg tatattttga cgggacggat
     5161 cggcggcata cacgtcgtcg cccctgtcgg cggcacgcag cccaaacaaa gtatttgccg
     5221 cataagcctg ttgggcatat aaaaccgctt ccgcctcggg gatagccaaa cgctgcacgc
     5281 ccaagcaaaa tccgccttcg cattgcttga gcaataattc gtacagtccc tgccggtaat
     5341 tttgtttaaa cgcaaacgaa ccggaatccg ccgtttttgc cgcaatcagt ttgcgcccgt
     5401 cgagcgtttt cagattttcc ggccggcgtt ccaaaaccac gccggattgt ccgctgactt
     5461 tgtcttcaaa ggtcagggcg ggttcgtccg actcccgcac gtcgtagccg aacaggaaat
     5521 ccgcgccgcc cgcataatcc ttatggacgg tcagtttttc atctttcgtg ttcaggcgga
     5581 tgcgggcatt atcggaagtt tccagcgtat ggatgtcgga atggcggcgc ggttcccaaa
     5641 gggaatcttt cagcgtcatc ttggtcagtt ccaacacctg tccagcgacg tgggatttgt
     5701 tttcgatttt gacgtgtaat tttttattga agatgttgtc gagattggtc ggtgttgtat
     5761 tactatgagg agtgagtaca gcttcttcta taattggatc aataactttt ctaaatttat
     5821 taattttatt tctaggtatt ccatattgtt ttattatcgc ttcctcaact atttttttat
     5881 ttttttcccc aatcttcggg tcttgtttta tataaatcct ttaattgatc cttaaccgcc
     5941 tgctttaaat cagctccgta attctctgta acatatttct taacaacggg catattatcg
     6001 acggcgagga tgccgctatt gtagttttta cccgtgatat tgatttcgtc atacaaggct
     6061 tcagatgaat ttggatcggt tttaccgctg gaaaaataat gggaaacgcc gtttgccggc
     6121 ttgtctgaaa atgaaaaatc ggcagcatcg ccaatatttg tagaacgagt atccgaaccg
     6181 ggctgataac tgaaagcacc gaagcaatca aaagacacac tgcacgggcc gcgccaaacg
     6241 tgggaatttc tgtcttccgc cgcttctaaa ataaatttgt ttttaatctc ggcttctttg
     6301 acgggatcgt acgcatccga acctcaaaca tatggcgtgc aaaacagcga taaaacagat
     6361 aatgttaata gattaacccg accgcttgct tgcttgcttg cttgcttgct tgcttgcttg
     6421 cttgcttgct tgcttgcttg cttgcttgct tgcttgcttg cttgctttca gtgtcatgag
     6481 aaattttcct ttgtcaagtg ttaaaattat aatgattata tactacatca cactacatcg
     6541 caatgaaaaa tcaggaaaaa caaaaaacct ctccgccgtc attcccgcgc aggcggaaat
     6601 ctagaatttt aatgcggcaa gaatttatcg gaaaaaactg aagtttaaag acctagattc
     6661 ccgcctgcgc gggaatgacg gtttagaaat cacctgaaac gagaaaaaga accgaaaccg
     6721 gacaagtcgg attcccgcac gggcgggaag gacggaattt cagattgttg tttttgattt
     6781 tctgttttgt gggaataacg ggattttgga tgatgtgcat ttatcgggaa aactaaaaac
     6841 cctccgccgt cattcccgtg aaagcgggaa tctagaattt caatgccgca agaatttatc
     6901 ggggatgtcc ggggtttaaa ggtctggatt cccgcctgca cgggaatgac ggtttagaaa
     6961 tcacctgaaa cgagaaaaag aaccgaaacc agataagtcg gattcccgca cgggagggaa
     7021 ggacgggatt tcaggttact gtttttgatt ttctgttttg tgggaataac gggattttgg
     7081 atgatgtgca ttttcgggaa aactaaaaac cctccgccgt cattcccgcg aaagcgggaa
     7141 tctagaattt taatgcggca aaaatttatc ggaaaaaacc gaagtttaaa gacctagatt
     7201 cccgcctgcg cgggaatgac ggtttagaaa tcacccgaaa cgagaaaaag aaccgaaacc
     7261 gaacaagccg gattaccgcc tgcgcgggaa tgacggctca aaagttacga aacgaaaaat
     7321 aaccgaaacc aaacaagtcg gattcccgcg cgggcgggaa tgacgataag cgtaatttca
     7381 atctgccata ttgtcttttc acttgcctga aaacagattt cagccaccta tccctgcatc
     7441 cggcggctga tgtagtcggc aatcaaatcc cgcttttccc aaaaaaactt ctgcattttt
     7501 tgttcggaat acagtttgcg gaccagagtg ggcaaaccgc tgtggacgat ggcggcgatt
     7561 tctttgttgc ctttttcttc ctgcattgcc gtctgaaaat ccatacccct gcctttcaga
     7621 tattctgcaa ggcggttgcg gatgtgggaa ttgagttcga tggatttgag cattttgcct
     7681 ccgttttgcg gtaaggattt attcgatttg tttatccgcc tgattttatc acgtttccca
     7741 agcggtttgc ctgtacaata ccgcttttcg gcagggtgtg ggcgatgatg ttttcttggt
     7801 tcaagctgtt tcacttgttt tttgtcattt cgtggtttgc agggctgttt tacctgccga
     7861 ggattttcgt caatatggcg atgattgatg tgccgcgcgg caatcccgag tatgtgcgtc
     7921 tgtcgggcat ggcggtgcgg ctgtaccgtt ttatgtcgcc gttgggcttc ggcgcggtcg
     7981 tgttcggcgc ggcgataccg tttgccgccg gctggtgggg cagcggctgg gtacacgtca
     8041 aactgtgttt gggcttgatg ctcttggctt accagttgta ttgcggcgtg ctgctgcgcc
     8101 gttttcagga ttacagcaat gctttttcac accgctggta ccgcgtgttc aacgaaatcc
     8161 ccgtgctgct gatggttgcc gcgctgtatc tggtcgtgtt caaaccgttt tgacggagca
     8221 tcttatgccg atagaaatcg aacgccgttt tttgattgga aacgacaact ggcggcaata
     8281 cgccgacgaa ccgctgctgt tgaggcaggg ttatctgtct gttgaaaaag aacgcaccgt
     8341 ccgtgtccgc attgccggaa aacaggcgtg gctgacgctg aaaggctata tttcggaaat
     8401 cagccgcagt gagtttgaat acgaaatccc gcttgccgat gcggaaaaga tgatggaaac
     8461 gatgtgcccg tttaaaatgg aaaaatggcg ttatccggtc agatggggcg gcagcctgtt
     8521 tgaaatcgat gtttttcttg gcgataatgc gcctttggtc gtcgcggaaa tcgagttgcc
     8581 cgacgagaat gccgattttg accgtccgga ctggctggga cgggaaatca ctgccgacgg
     8641 tatgtttacc aatgcctatt tgagcaggca tccgttctca agctggaaaa atgccgtctg
     8701 aaacggcttc agacggcatt ctccgacaac catcgcaaat ccaaagacag cctctatatc
     8761 cttatttctg ctttctttgt tccattattc ccaataaatc cccataacct aaaatctcgt
     8821 cattcccgcg caggcgggaa tccggttctt taaacttcgg ttttttccga taaattgctt
     8881 tagcttttcg tttccggatt cccgcttttg cgggaatgac gatggaagat tgttgttatt
     8941 tcggataaat taccctaact ttaaaatccc ggattcccat cttcggggga ataacaatat
     9001 tttctatttc agcccatcat ttgcggggga ttttatagag agtttatatt tcaatatctc
     9061 aaataatgca caaaagcata gcgcgtgcct ttgctgctga cacggcgttc cgtccgctct
     9121 gcttctttcc aatgcgtccg gtctattgcg gggaaaaatg catctccttc cacagacaaa
     9181 tccacttcgg ttatccgcaa atcggtcgcc aatggcatcg cttgtccgta tatctgcgcg
     9241 ccgcccataa tgacggcttc ttccgcgcct gcgcacaatg ccaatgccgc ctccaaactt
     9301 gccgccgttt ccgcgcctgc cgcgcaataa tccgcctgcc ggctgatgac gatgttcctc
     9361 cgtccgggca ggggtttgac gggcagggat tcccacgttt tccgccccat aatgacgggt
     9421 ttgcccaagg tataggcttt gaaaaatgcg aaatcttcgg ggatgtgcca aggcatagca
     9481 ttgcccgccc cgatgcacag gttttccgca cacgccgcaa ttagggttat tttgagcata
     9541 tttcctccac aaaaatgccg tctgaacgct tcagacggca ttttatgaca ttccgtgtca
     9601 aaaatctcaa ccggcgcgcg ccatacgttt tttgtttgca cctgccaaca atgccaacag
     9661 ttcttcagtc gcgccccaac cgatacacgc atcggtaatg cttttgccgt acacttccgg
     9721 cttatcctgt ctgccttcga ccaaatggct ttccaccatc acgcccataa tattgctccc
     9781 gtcctgttcc aattgggcag caatatcttg tgccacttcc atctgccggg tgtaatcctt
     9841 gcggctgttg gcgtggctgc aatctatcat cagcttatcg gttacccctg ccgcacgcag
     9901 ttgttccgcc gcctcgctga cgtgtcccgc atcataattc ggctcttttc cgccgcgcaa
     9961 aatgacatga cagtcgggat tgccgccggt atggacaatg gcggaatgtc cggccttggt
    10021 tacagacaag aaatgatgcg aatggctcgc cgcaccgatt gcgtcgatgg caatcttcaa
    10081 attgccatcc gtaccgtttt taaagccgac ggggcaggac agcccgcttg ccaattcgcg
    10141 gtgaacttgg ctttcggtcg tccgcgcacc gattgccccc caagaaatca agtccgcata
    10201 atattgcggc gtaatcatat ccaaaaactc ggtagaggca ggcataccca tattgttcag
    10261 cgacaacaac aggctgcgcg cctgacgcaa accgaaattg atatcgaacg taccgtccaa
    10321 atgcgggtcg ttaatcaaac ctttccaacc caccgtcgtc ctcggcttct cgaaataaac
    10381 gcgcatcaca atcaaaagct cgttttcata ctgcttgcgg agtttcaaca aacgctccgc
    10441 atattccaac gccgctttcg gatcgtgaat cgaacacggc ccgataataa ccaacagccg
    10501 cttgtccctg ccgtgaacca aatcggaaat ttcctgacgg gtgcggtgaa ccaagcccga
    10561 agcctctttg gaaatcggca gctcgtaaag atgggcaatc ggcggcaaca actctttaac
    10621 ttctttaatc ttaatatcgt ctgtggggta atggtgtgtc atcttgcatc tttcctgatg
    10681 gttttttata cgcggcttag gttacatcgt ttaccttgca caaacaagtg caacatatta
    10741 ctacaaagct attttatttc aaaataactg atatatcttt tttcatagat tttaaatttc
    10801 atatttttaa tattttagga attttattcc aaagaaaaag aaacagattg ataaaaacaa
    10861 tacccgccat tcattcggac aaaaccgcac ggaacatccg ttttcccgtt tccacgacaa
    10921 tccggtacag gacaccccgc tgccgattcc gcctgcacat ccggcaaaat ttcatacgca
    10981 aggaaaatgt tgaaaacaaa aagaactaat tgcttgaaaa aagatttaat tggaatgcgg
    11041 gtatttccca cactttctcc atttattcat cctcattata ggaagaaaaa catgaaaaaa
    11101 ccctgcttgc actctcactt gcagccgtgt ccgccgttac ggtagccgat attcccgagt
    11161 ctaacggcaa gggcaaagcc atcatcggcg ataaggaaaa acaccgttac caagcatgaa
    11221 aaccttgctt tgaaagtcca tggcgaaatc cgccaagatt tgggggacgg atgatccttg
    11281 accccttggg cggatgcata tgcagatttg cgcggcaaaa ccaaagtgat gacgacccag
    11341 atgggtgctt cccgcgatgt cagcaaaagc gccaaaggtt ggagtgtcgg tatcggtctg
    11401 aatgtaggca aacagttgac cgacagcgtc ggtctcgagt ttgatccata ctaccgtcac
    11461 aaaacaatct acaaaccccg tgagattgtc ttggacggtg acaaaaccaa aatgggccgc
    11521 tccaaatcca acgagtacgg cttccgcgta gccgcaacgt tctata
//
LOCUS       DAXHNP010000055        11487 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.055, whole genome shotgun sequence.
ACCESSION   DAXHNP010000055 DAXHNP010000000
VERSION     DAXHNP010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11487
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.055"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            84..196
                     /locus_tag="ACFM5C_001052"
                     /pseudo
     CDS             84..196
                     /locus_tag="ACFM5C_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            227..3358
                     /locus_tag="ACFM5C_001053"
     CDS             227..3358
                     /locus_tag="ACFM5C_001053"
                     /EC_number="3.1.21.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009035 - type I site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HFC6068776.1"
                     /translation="MNLETKPIAETPNFIVLDQYEKIEQSGSYQSENQLEAELIADLQ
                     NQGYEYRKDLNSQSRLLENLRAQLQRLNDVAFSDGEWARFLTEYLDRPSENITDKTRK
                     IHDDHIYDFAFDDGRLKNIYLLDKKNLARNHVQLINQFEQTGTHANRYDVTVLVNGLP
                     LVQIELKKRGVAVREAFNQVHRYSKESFNSENSLFKFLQIFVISNGTDTRYFANTTKR
                     DKNSFDFTMNWARSDNHPIKDLKDFTATFLQKSVLLGVLLHYSVFDANDTLLIMRPYQ
                     IAAAERILWKINSSAQAKNWSGPESGGYVWHTTGSGKTLTSFKAARLATESAFIDKVF
                     FVVDRKDLDYQTMKEYQRFSTDSVNGSESTAGLKRNLEKDDNKIIVTTIQKLNNLMKS
                     EDNLPVYHQQVVFIFDECHRSQFGEAQKNLKKKFKKFCQFGFTGTPIFHDHIVDGKLI
                     MKGNALGSESTESVFGRQLHSYVITDAIRDEKVLKFKVDYNDVRPQFKAVEAEQDEKK
                     LSAAENRQALLHPERIREITQYILNQFRQKTHRLNAGGKGFNAMFAVSSVDAAKCYYE
                     AFKTQQAGSLHPLKVATIFSFAANEEQNAVGEIADETFEPEAMDSSAKEFLQAAINDY
                     NACFKTNFGTDSKAFQNYYRDLAKRVKNQEVDLLIVVGMFLTGFDAPTLNTLFVDKNL
                     RYHGLMQAFSRTNRIYDATKTFGNIVCFRDLEQATIDAITLFGDKNTKNVVLEKSYEE
                     YMNGYTDSQTGEARRGYLDVAKELHERFPDPDKIETEKDKKDFAKLFGEYLRAENVLQ
                     NYDEFAALRELQSVDAADEDAMKAFQEKYYLSDEDVQEMRQVPMPSERAVQDYRSAYN
                     DIRDWLRRQKAGEQKEQSKIDWDDVVFEVDLLKSQEINLDYILQLIFEHHKKIKGKAE
                     LVEEIRRIIRASIGHRAKESLIVDFINDTDLDKVPDVPAILETFYTYAQEVMRNEAAE
                     LIAAEGLNETAAKRYLISSLKRGYASENGTELTETMPKMSPLNPQYLTKKQSVFQKIA
                     AFVEKFAGIGTDI"
     gene            complement(3398..5689)
                     /gene="clpA"
                     /locus_tag="ACFM5C_001054"
     CDS             complement(3398..5689)
                     /gene="clpA"
                     /locus_tag="ACFM5C_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HFC6068777.1"
                     /translation="MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDASVPNV
                     LKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVETRPTLGFQRVMQRAMVHTQSAGK
                     AAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDDGNYSSDGMD
                     DDNENRTKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPLLV
                     GEAGVGKTALAEGLAHQIVNGGIPDALKDAEVYALDMGSLLAGTKYRGDFEARVKSVL
                     KQLEKIPHAILFIDEIHTIIGAGSTSGGTMDASNLLKPALAKGSLRCIGATTYDEYRT
                     IFDKDHALSRRFQKIDVVEPTVSETVQILRGLKPMFEAFHQVRYTQGALEAAAELSAR
                     YINERFLPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVARIPEKTVSHDD
                     KQVLQFLGRDLKNMVYGQENAIDALVAAVKMSRSGLALPDKPIGSFLFSGPTGVGKTE
                     AAKQLAYSLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHCVL
                     LLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSLGF
                     TAKRERGDEMQAINKLFTPEFRNRLDAIIPFAPLSEPIIVKVVDKFLLQLEHQLLDKK
                     VEAEFTSALHKYLAEKGFDPQMGARPMHRLIQEKIRKPLADELLFGKLSDGGFVRIDW
                     DAAKEEAVLKFKKSKVKIKTASA"
     gene            complement(5691..5993)
                     /gene="clpS"
                     /locus_tag="ACFM5C_001055"
     CDS             complement(5691..5993)
                     /gene="clpS"
                     /locus_tag="ACFM5C_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HFC6068778.1"
                     /translation="MTAQHQSDTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEI
                     FMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI"
     gene            6236..6439
                     /locus_tag="ACFM5C_001056"
     CDS             6236..6439
                     /locus_tag="ACFM5C_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HFC6068779.1"
                     /translation="MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKE
                     GQRVSFDVTTGPKGKQAANIQAA"
     gene            complement(6736..8067)
                     /gene="pmbA"
                     /locus_tag="ACFM5C_001057"
     CDS             complement(6736..8067)
                     /gene="pmbA"
                     /locus_tag="ACFM5C_001057"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HFC6068780.1"
                     /translation="MLFNHTASELLDLCRRTLDLAKAAGATAAEADFSESLGQSVSVR
                     LGEIEQIEFQQDKSLDITVYVGKRKGRASTADFSEKALQDTVKAAIDIARYTAEDDCA
                     GLADASLMAQHIGDPDLYHEWDLDTEAAVELAKQCEQAALNEDERIENSEGAAVQTGH
                     YQYVYGNTHGFAAHQQGTRHSISCSVVAADENGMQRDYWYDSSCRHQDMDSPTQIGQT
                     AAERTLRRLNSRSIPTGSYPVLFDATVSGGLIGHLVGALSGGSLYRQSSFLIDSIGKQ
                     VLPDFLSLREEPHIPRAFGSTYFDSEGVATRPRFVIRDGIVEGYFLSSYSARKLGMQT
                     TGNAGGAHNLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSRGAAGFWVEN
                     GVIAYPVHEITVAGRLQDMYRDIVGVADDALRRSSNKIGSILIAGMTVAGS"
     gene            8222..8728
                     /gene="yjgA"
                     /locus_tag="ACFM5C_001058"
     CDS             8222..8728
                     /gene="yjgA"
                     /locus_tag="ACFM5C_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HFC6068781.1"
                     /translation="MFEQEDEWVSKTQMKKQMNGLQDLGMELTKLSSDTLKKIGLDED
                     LYEAVVTYKKITSNGALKRQAQFIGRLMRDTDPAPIEAFLAKLRGDDAVHNAFLQRVE
                     QARVRLLADDGALTQFMSDFPHADAGKLRTLVRNTKKEQEQNKPPKNFRALFQELKTV
                     MENGDAEI"
     gene            8775..9494
                     /locus_tag="ACFM5C_001059"
     CDS             8775..9494
                     /locus_tag="ACFM5C_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068782.1"
                     /translation="MLFRKTTAAVLAAALMLNGCTAMMWGMNDPFSQTTAYKHVDKDQ
                     IRAFGVVAKDNAQLEKGSLVMMGGKYWFVVNPEDSAKLTGILKAGLDKPFQIVEDTPS
                     YARHQALPVKLESPGSQNFSTEGLCLRYDTDKPADIAKLKQLGFEAVKLDNRTIYTRC
                     VSAKGKYYATPQKLNADYHFEQSVPADIYYTVTEKHTDKSKLFANILYTPPPFLILDA
                     AGAVLALPVAALIAATNSSDK"
     gene            9563..11263
                     /gene="recJ"
                     /locus_tag="ACFM5C_001060"
     CDS             9563..11263
                     /gene="recJ"
                     /locus_tag="ACFM5C_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFC6068783.1"
                     /translation="MSVKIQTRSVNTDVFNHLLTAGADPLIARLCASRGVQSPAELDD
                     KLASLLPYQTLTNCEAAARRLADAVERQEKILIVADYDADGATACAVGLDGLAAMGAK
                     VDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVDNGIASIAGVARAQELGLDVIVTD
                     HHLPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFYVLMALRAELRRRNYFSDGLKEP
                     NLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSGKMRPGIRALFEVARRDWRKA
                     QPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQELAAQLNNLNIERREIEQSM
                     LQDALNAFPETLPSGQTTLVAYRDDFHQGVVGIVASRLKDRFYRPTIVFAPADNGEVR
                     GSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILEHNIPAFQTSFEEAVRE
                     MVCEDDLSQTFITDGSLPACDITLEQAQNLARHVWGQGFAPPSFTDEFHVVRQQPLGA
                     EGKHKKVWLQKDGCEFEAMFWRCSEDIPEYIRTVYRPVANEWRNNLELQLYIDYWEAV
                     "
BASE COUNT         2733 a         2897 c         3206 g         2651 t
ORIGIN      
        1 cctacgatgg acacaaccga cccgcattcc gccgcagcca accaaagcag cctgcacatt
       61 ttcaggcagc ccaatccgaa catcaaaccg tttatagtga attaaattta aatcaggaca
      121 aggcggcgag ccgcagacag tacaaatagt acggcaaggc gagccaacgc agtaccggtt
      181 taaatttaat tcactataaa acccgacacc gcaaaggacg acccatatga acctcgaaac
      241 taaacctatc gccgaaacgc cgaatttcat cgtgctcgac caatatgaaa aaatcgaaca
      301 gtcgggcagc taccaatcgg aaaaccagtt ggaagcggag ttaatcgccg atttgcagaa
      361 tcagggttac gaataccgca aggatttgaa cagccaaagc aggctgctgg aaaacctgcg
      421 cgcgcagttg cagcggctga acgatgtggc gttttcagac ggcgaatggg cgcggttttt
      481 gacggaatat ctggacaggc cgtctgaaaa cattaccgat aaaacccgaa aaatccacga
      541 cgaccatatt tacgatttcg cttttgatga cggccgtctg aaaaatattt atctgctgga
      601 caaaaaaaac cttgcccgca accatgtgca gcttatcaac cagtttgagc agacgggcac
      661 gcatgcaaac cgctatgacg ttaccgtgtt ggtaaacggc ttgccgctgg tgcagattga
      721 attgaaaaag cgcggcgtgg cggtgcgcga ggcattcaat caggtgcacc gttacagcaa
      781 agagagcttc aacagcgaaa attcgctgtt caaattcctg caaatcttcg tgatttccaa
      841 cggcacggat acgcgctatt tcgccaacac caccaagcgc gacaaaaaca gcttcgattt
      901 cacgatgaat tgggcgcggt cggacaatca tccgattaag gatttgaaag actttactgc
      961 cacgttcctg cagaaaagcg tattgctggg cgttttgctg cattacagcg tgttcgatgc
     1021 gaatgatacg ctgctgatta tgcggccgta ccagattgcc gccgccgaac gcattttgtg
     1081 gaaaatcaac agttcggcgc aggcgaagaa ttggagcggg ccggaaagcg gcggctatgt
     1141 ctggcacacc acgggcagcg gcaaaacgct gaccagcttc aaggcggcgc gtctggcgac
     1201 ggaatcggcg tttatcgaca aggttttctt cgtggtggac aggaaggatt tggactatca
     1261 gacgatgaag gaataccaac gtttttcgac cgacagcgtg aacggttcgg aaagcacggc
     1321 gggcttgaaa cgcaatttgg aaaaagacga caacaaaatc atcgttacca ccatccagaa
     1381 gctgaacaac ctgatgaaga gtgaagataa tctgccggtt tatcaccagc aagttgtctt
     1441 tattttcgac gaatgccacc gttcgcaatt cggcgaagcg caaaaaaacc tgaaaaagaa
     1501 atttaaaaaa ttctgccagt tcggttttac cggtacgccg atttttcatg accatatcgt
     1561 tgatggcaaa ctgattatga aaggcaatgc gcttggttcg gagagtacgg aaagcgtatt
     1621 tgggagacag ctgcattctt atgtgattac cgatgccatc cgcgatgaaa aagtattgaa
     1681 attcaaagtg gattacaacg atgtgcgccc gcagttcaaa gccgtggaag cggaacagga
     1741 cgagaagaaa ctgagtgccg ccgaaaaccg ccaagccctg ctgcatcctg aacgcatccg
     1801 cgaaatcacg caatatatcc tgaaccagtt caggcagaaa acacaccgct tgaatgcggg
     1861 cggcaaaggc tttaacgcca tgtttgccgt cagcagcgtg gatgcggcga agtgctatta
     1921 cgaagcgttc aaaacacaac aggcaggcag cctgcacccg ctgaaagtgg ccaccatttt
     1981 ttcctttgcc gccaacgaag agcaaaacgc cgtcggtgaa attgccgatg aaacctttga
     2041 accggaagcg atggacagca gcgcaaaaga atttttgcag gctgccatca acgattacaa
     2101 cgcctgtttc aaaaccaatt tcggcacgga cagcaaagcc tttcagaact actaccgcga
     2161 tttggcaaaa cgggtaaaaa atcaggaagt ggatttgctg attgtggtcg gcatgttttt
     2221 gacgggtttt gacgcgccga cgctgaacac gctgtttgtc gataaaaacc tgcgctatca
     2281 cggcctgatg caggcgtttt cgcgcaccaa ccgcatttac gatgccacca aaaccttcgg
     2341 caacattgtc tgcttccgcg atttggagca ggcaaccatt gatgcgatta ccttgtttgg
     2401 cgacaaaaac accaaaaatg tagtgctgga aaaaagttac gaagaataca tgaacggcta
     2461 taccgacagc cagaccggcg aagcgcgacg cggctatttg gatgtggcaa aagaattgca
     2521 cgagcgtttc cccgatcccg acaaaatcga aacggaaaaa gacaaaaaag attttgccaa
     2581 actcttcggc gaatacctgc gggcggaaaa cgtattgcag aactacgatg aatttgccgc
     2641 gctgcgcgag ttgcagagtg tggacgcggc ggacgaagat gcgatgaagg cgtttcaaga
     2701 aaaatactac ctgagcgatg aagacgtgca ggaaatgcgg caagtgccga tgccgtctga
     2761 aagggcggtg caggactacc gttccgccta caacgacatc cgcgattggt tgcgccgcca
     2821 aaaagcaggc gaacagaaag aacagtcaaa aatcgactgg gacgatgtgg tttttgaggt
     2881 ggatttgctc aaatcgcagg aaatcaatct ggattacatc ttgcaactga ttttcgagca
     2941 tcacaaaaaa atcaaaggca aagcggagct ggtggaagaa atccgccgta tcatccgcgc
     3001 cagtatcgga caccgcgcca aagagagcct gattgtggat ttcatcaacg atacggattt
     3061 ggataaagtc cccgatgttc ccgccatact ggaaaccttc tacacctacg ctcaagaggt
     3121 gatgaggaat gaagccgcag agctgattgc cgccgaaggt ttgaacgaaa ccgccgccaa
     3181 acgctattta atcagctcgc tcaaacgcgg ctatgccagc gaaaacggta cggaactgac
     3241 cgaaaccatg ccgaaaatga gtccgctcaa cccgcaatat ctgacgaaga aacaaagtgt
     3301 ttttcaaaag attgcggcgt ttgtggagaa gtttgccgga atagggacag atatttgaca
     3361 aaatgccgtc tgaacctttc agacggcatt tttgatttta tgcggaggcg gtttttattt
     3421 tgaccttgct tttcttaaac ttcaacacgg cttcttcttt tgccgcatcc cagtctatcc
     3481 gcacgaagcc gccgtcggat agtttgccga acaggagttc gtcggcgagc ggtttgcgga
     3541 ttttttcctg aatcaggcgg tgcatcgggc gcgcgcccat ttgcgggtcg aaaccttttt
     3601 ccgccagata tttgtgcaat gccgacgtga attcggcttc gacttttttg tcgaggagct
     3661 ggtgttcgag ctggagcagg aatttgtcca cgactttgac gatgatgggt tcggacaagg
     3721 gtgcaaacgg gataatcgcg tccaagcggt tgcggaactc gggcgtgaag agcttgttga
     3781 ttgcctgcat ttcgtcgccg cgttcgcgct tggcggtaaa gccgaggctg gggcggctga
     3841 ggctttccgc gcctgcgttg gtggtcataa tcaggatgac gttgcggaaa tcggcactct
     3901 tgccgttgtt gtcggtcagt ttgcctgcgt ccatgacttg caggaggacg ttgaaaatgt
     3961 cggggtgggc tttttcgatt tcgtccaaga gcaatacgca atgcggctgt ttgttgacgg
     4021 cttcggtcaa aaggccgcct tgttcaaagc cgacgtagcc cggtggcgcg ccgatgaggc
     4081 gcgatacggc atggcgttcc atgtattcgg acatatcaaa gcgttgcagc ggtacgccca
     4141 gcgagtaggc aagctgtttg gcggcttcgg ttttgcccac gccggtcggg ccggagaaga
     4201 ggaagctgcc tatcggtttg tcgggcaggg caaggccgga acgcgacatt ttgacggcgg
     4261 caaccagcgc gtcgatggcg ttttcttgac cgtaaaccat gtttttcaaa tcgcgaccga
     4321 ggaattgcag cacttgtttg tcgtcgtgcg acacggtttt ttcgggaatc cgcgcaactt
     4381 tggcgatgac ggtttcaatt tgtgctttgc cgatgacttt tttctgtttg gatttgggca
     4441 gaatccgttg cgccgcgcct gcttcgtcca tcacgtcgat ggctttgtcg ggcaggaaac
     4501 gctcgttgat gtagcgtgcg gagagttcgg cggcggcttc gagtgcgcct tgcgtatagc
     4561 ggacttggtg gaaggcttca aacatcggct tcaagccgcg caggatttgt acggtttcgg
     4621 aaacggtggg ttcgaccacg tcgatttttt ggaagcggcg gcttaaggcg tggtctttgt
     4681 cgaaaatggt gcggtattcg tcgtaagtgg tcgcgccgat gcagcgcagc gaaccttttg
     4741 ccagcgcggg tttgagcagg ttggacgcgt ccatggtgcc gccgctggtg ctgcctgcgc
     4801 cgatgatggt gtggatttcg tcgataaaca aaatggcgtg cgggattttt tcgagctgtt
     4861 tcaagacgga tttgacccgc gcttcaaagt cgccgcggta tttcgtgccc gccaacagcg
     4921 agcccatatc cagcgcgtac acttcggcat ctttgagcgc gtctggaatg ccgccgttga
     4981 cgatttgatg tgccaaacct tccgccagcg cggttttgcc cacgcccgct tcgccgacca
     5041 aaagcggatt gtttttgcgg cggcggcata ggatttgcac cagccgttcc atttcgtgtt
     5101 tgcgaccaat caaagggtcg atacggccgg ctttgacttc ggcgttgagg ttgacggtgt
     5161 acgccgataa agggtttttg cccggtttgg tgcggttttc attatcgtcg tccatgccgt
     5221 ctgaagaata gttgccatcg tcttcatctt catcgggaga gccgtgggca atacagcgca
     5281 aaacttcaaa acgcgtaacc gattgcagct tgaggaaata gacggtgtgg ctgtcggttt
     5341 cgctcatcag cgcgaccaaa acgtccaacg gttcgactgc ggcttttccg gcagactggg
     5401 tatgcaccat cgcccgttgc atcacgcgtt ggaagccgag cgtgggccgt gtttcgaccg
     5461 tgtctaaaag gtgttcggga atcagggggg tgttttcggc aacgctggcg gcgagctgtt
     5521 cggacaccac tttcaaatcc gcgccgcaga gttttaagac gttcggcacg gaggcatctt
     5581 cttcgatgag taccaaaagc agatgctcga ggctgataaa ttcataatga gccttacgcg
     5641 cctcgcggta aagctgctgc aaaatctgtt ccaattcggg tgcaagcata ttaaatctcc
     5701 tcgacaatac attgcagcgg atgcccttcg gcttttgccc gctgcatgac ttgttgctgt
     5761 ttggtttggg caatatcgcg cgtgtaagtg ccgcacaggc ctttgccttc gtgatgaacc
     5821 aagagcatta ccgctaccgc ctgttcttgt ccgagcatga agatttcggt caggatttca
     5881 acgacaaatt ccatcgtggt gtaatcgtcg ttcaatagga aaacgccgta acgtttcggc
     5941 ggcagggtgt tcagacggtg caagagcgtg tcggattggt gttgcgcggt catagtgtgt
     6001 cccatttgaa agccgcgttc agacggcatt tttgttgtat tttcggtact tttgcctatt
     6061 ttcccacttt tttgaaaaca tagcttgacg ttttgtctta acaaatgtaa aaagacggtt
     6121 aagcaggatt gggcatccgc cgagtatatc aagctggaag gaacgccaga cggctcggtt
     6181 tgccgtatgc cttgttttgc tgattttgtt aatttttgag tataggaagt ttctaatggc
     6241 aaccggtatc gtaaaatggt ttaacgacgc taaaggtttt ggtttcatca cgcctgatga
     6301 aggcggcgaa gatttgttcg ctcacttctc agcaatcaat atggaaggtt tcaaaaccct
     6361 gaaagaaggc caacgcgtct ctttcgacgt aaccaccggc cctaaaggca aacaggccgc
     6421 caacattcag gctgcttaat tcctgatgta cggtcaaatg tatatttgaa aacggcggga
     6481 caggcaatgt cccgccgttt ttgtctgccg ttttgccggc ggcggaaaaa ccccaatccc
     6541 cgcacgcctt atcctgaact tgtgtgtacc ctgttgtgga caagtggctt agtattttga
     6601 cggataaggg aaaatcagtg ctgatgaaaa aatgtgcaat gttgtcggca aaaggcggtg
     6661 cggcataaaa cggcaaacgg gcaggcacgg ggcaaaacgt gctgccttcg tcttcagacg
     6721 gcatcggcag ggcgttcagc ttccggcaac cgtcatcccc gcaatcagaa tcgagccgat
     6781 tttgttggac gaacgccgca aagcgtcatc cgccacgccg acaatgtcgc ggtacatatc
     6841 ctgcaagcgt ccggctacgg taatctcgtg gacggggtag gcaatcacgc cgttttccac
     6901 ccaaaaaccc gccgcgccgc gcgagtagtc accggtaatg gtgttcgcgc cctgtcccat
     6961 cagttcggta accaataatc ccgtccccat ttctttcagc aggtcggatt gcgtttcgtg
     7021 cgtatggttc aaatacaggt tgtgcgcgcc gccggcgttg cccgtggtct gcataccgag
     7081 tttgcgcgcg ctgtaactgc tgaggaaata gccttcgacg atgccgtcgc ggataacgaa
     7141 acgcggccgc gtggcgacgc cttcggaatc gaaataggtg ctgccgaagg cgcggggaat
     7201 atgcggctct tcgcgcaggc tgaggaaatc gggcagaacc tgtttgccta tgctgtcgat
     7261 caggaagctg ctttggcggt agagcgagcc gccggacagt gcgccgacga ggtgtccgat
     7321 cagacctccc gaaacggtcg catcgaatag gacggggtag cttccggtcg gaatgctgcg
     7381 gctgttcaga cgacgtaagg tacgttcggc ggcggtttga ccgatttgcg tcgggctgtc
     7441 catgtcttga tggcggcagg aggaatcgta ccagtagtcg cgctgcatgc cgttttcgtc
     7501 ggcggcaacg acgctgcatg aaatgctgtg gcgtgtgcct tgctggtgtg cggcaaaacc
     7561 gtgggtgttg ccgtaaacgt attggtaatg tccggtttgc accgccgccc cttcggagtt
     7621 ttcgatgcgc tcatcctcgt tcagggcggc ttgttcgcat tgttttgcca actcgacggc
     7681 ggcttccgta tccaaatccc attcgtggta aaggtcgggg tcgccgatgt gttgcgccat
     7741 aagcgaagcg tctgccaaac ctgcgcaatc gtcttcggcg gtgtagcggg cgatgtcgat
     7801 ggcggctttg acggtgtctt gcagggcttt ttcggagaag tcggcagtgc tggcgcggcc
     7861 tttgcgtttg ccgacgtaaa cggtaatgtc cagcgacttg tcctgctgga actcgatttg
     7921 ttcgatttcg cccagccgca cgctgacgct ttgtcccaat gattcgctga aatcggcttc
     7981 ggcggcggtc gcgcccgctg cttttgccaa gtcgagcgtg cggcggcaga ggtcgagaag
     8041 ttcggaagcg gtgtggttga acagcataga aatctttctt ggtggagcgt tgcggcattt
     8101 taaccgtttc gggcggcagg ggcaaaagcg tgccgtttgc agggcggacg gtgcaaaatg
     8161 ccgtctgaac gcggaatcat tctgttaaaa tgcgcccgtc ggataaaatt tgagaatgaa
     8221 gatgtttgaa caagaagacg aatgggtcag caaaacccaa atgaaaaagc agatgaacgg
     8281 tttgcaggat ttgggtatgg agctgaccaa gctctcaagc gacacgttga aaaaaatcgg
     8341 cttggacgaa gatttgtacg aagccgtcgt tacctataaa aaaatcacat ccaacggcgc
     8401 gctcaagcgg caggcgcaat ttatcggcag actgatgcgc gataccgatc ccgcgcccat
     8461 cgaggcattt cttgccaagc tgcgcggcga cgatgcggtg cacaatgcct ttttgcaacg
     8521 cgtggaacag gcgcgcgtac ggctgttggc agacgacggc gcgttgacgc agtttatgtc
     8581 ggattttccg catgcggacg cgggcaagct gaggacgctc gtccgcaaca ccaaaaaaga
     8641 gcaggagcaa aacaaaccgc cgaaaaactt ccgcgcgctg tttcaagaat tgaaaaccgt
     8701 gatggaaaac ggggacgcgg aaatttaggc atattttcag acgacatccg ccgttattta
     8761 gattggagga taaaatgttg ttccgtaaaa cgaccgccgc cgttttggcg gcagccttga
     8821 tgttgaatgg ctgtacggca atgatgtggg gcatgaacga cccgttcagc caaacgaccg
     8881 cctataaaca cgttgacaag gatcaaatcc gcgccttcgg tgtggttgcc aaagacaatg
     8941 cccaattgga aaagggcagt ctggtgatga tgggcgggaa atactggttc gtcgtcaatc
     9001 ccgaagattc ggcgaagctg acgggcattt tgaaggcagg gctggacaaa cccttccaaa
     9061 tagttgagga taccccgagc tatgctcgcc accaagccct gccggtcaaa ctcgaatcgc
     9121 ctggcagcca gaatttcagt accgaaggcc tttgcctgcg ctacgatacc gacaagcctg
     9181 ccgacatcgc caagctgaaa cagctcgggt ttgaagcggt caaactcgac aatcgaacca
     9241 tttacacgcg ctgcgtatcc gccaaaggca aatactacgc cacaccgcaa aaactgaacg
     9301 ccgattacca ttttgaacag agtgtgcctg ccgatattta ttacacggtt actgaaaaac
     9361 ataccgacaa atccaagctg tttgcaaata tcttatatac gccccctccc tttttgatac
     9421 tggatgcggc gggcgcggta ctggccttgc ctgtcgcggc gttgattgca gccacgaatt
     9481 cctcagacaa atgaacggca atgccgtctg aaaagccttc agacggcatt tcaaacacat
     9541 ccgcactgta aagttccacg ctatgtccgt caaaatccaa acccgatccg tcaataccga
     9601 cgttttcaat catttgctca ccgccggcgc cgatccttta atcgcccggc tttgtgcctc
     9661 gcgcggtgtg caaagtcctg ccgaattgga cgacaaactc gcttccctcc tgccttatca
     9721 aacgctgacg aattgcgaag ccgccgcccg ccgtttggcg gatgcggttg agcgtcagga
     9781 aaaaatcttg attgtcgccg actacgatgc cgacggcgcg accgcgtgtg ccgtcggttt
     9841 ggacggtttg gcggcgatgg gggcaaaagt agatttcctc gtgcccaacc gctttgaaca
     9901 cggctacggt ttaacgcccg agctggccga aatcgccgcc gcgcaaggcg tggatttgct
     9961 gattacggtc gataacggca ttgccagcat cgcaggcgtg gcgcgtgcgc aggaattggg
    10021 tttggatgtg attgtaaccg accaccatct gcctgccgag accgtgccag actgcatcat
    10081 cgtcaatccg aaccaaaaag gctgcggttt ccaaagcaaa agcttggcgg gcgtgggcgt
    10141 gattttttat gtactgatgg ctttgcgtgc cgaactgcgc cgccgcaatt atttttcaga
    10201 cggcctaaaa gagccgaatc tgggcgacct tttggatttg gtcgcactcg gtaccgttgc
    10261 cgacgtcgtc tccctcgatc acaacaaccg tatcctcgtg tcgcaaggtt tgaaacggat
    10321 gcgttcgggc aaaatgcgcc ccggtatccg cgccttgttt gaagtggcgc ggcgcgactg
    10381 gcgcaaagcg cagccgtttg atatgggctt tgcgttgggg ccgcgcatca atgccgccgg
    10441 acggttggac gatatgtcgg tcggcattgc ctgtctgttg gcgcgagatg atgtggaagc
    10501 gcaggaactg gcggctcagt taaacaacct caatatcgag cgtcgcgaaa tcgagcagtc
    10561 tatgctgcaa gacgcgctga atgcttttcc tgaaaccctg ccttcaggtc agacgacttt
    10621 ggtggcgtat cgcgacgact tccatcaagg tgtggtcggc attgtcgcca gccgcctcaa
    10681 agaccgtttt tatcgtccga ccatcgtgtt tgcgcctgcc gacaacggcg aagtacgcgg
    10741 ttcgggacgt tccattccca atttgcacct gcgcgatgct ttggacttgg tgtccaaacg
    10801 ccatcccgat ttgattttga aattcggcgg acacgcgatg gcggcgggtt tgagcatact
    10861 tgaacacaac attcccgcgt ttcagacgtc ctttgaagaa gccgtgcgcg aaatggtgtg
    10921 cgaagacgat ttgtcgcaaa ccttcatcac cgacggcagc ctgcccgcct gcgacatcac
    10981 gttggaacag gcgcaaaacc ttgcccgtca cgtttggggg cagggcttcg cgccgccgag
    11041 ctttaccgac gagttccacg tcgtccgcca gcaacctttg ggcgcggagg gcaaacacaa
    11101 aaaagtctgg ctgcaaaaag acggctgcga atttgaagcc atgttttggc gttgcagcga
    11161 agacatcccc gaatacatcc gcacggttta ccgccccgtt gccaacgaat ggcgcaacaa
    11221 tctcgaattg cagctgtata tcgattactg ggaagcggtg tagaggcggc ggaacgccgt
    11281 ttgaatgtga tttctgttcc ttcatttgcc tgtttgtacg acgggaatgt tcccaatcgg
    11341 aaaagaaagt aaagggcgtt aatttttgtt aatcatccct tcttagggac gcaatatata
    11401 aggtgcatca aatttcagac tccggcggat ttgcatttga agtgcaactt tccctaacag
    11461 aaaaaggcca gtatgcggta gcatacg
//
LOCUS       DAXHNP010000056        11160 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.056, whole genome shotgun sequence.
ACCESSION   DAXHNP010000056 DAXHNP010000000
VERSION     DAXHNP010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11160
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.056"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(173..385)
                     /locus_tag="ACFM5C_001061"
     CDS             complement(173..385)
                     /locus_tag="ACFM5C_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HFC6068784.1"
                     /translation="MELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPD
                     TETRRADMPLEKWRQFLDWIEKTNAV"
     gene            complement(397..678)
                     /locus_tag="ACFM5C_001062"
     CDS             complement(397..678)
                     /locus_tag="ACFM5C_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068785.1"
                     /translation="MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGEC
                     PGGHYRHSENGITLYDFIFFDGKPADEARFAAVLTETCRRAVKKICETK"
     gene            complement(1007..1579)
                     /locus_tag="ACFM5C_001063"
     CDS             complement(1007..1579)
                     /locus_tag="ACFM5C_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HFC6068786.1"
                     /translation="MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVP
                     LSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTP
                     GKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYR
                     LQERRELAEWYSRRHRQAYEAAAQNTCNKT"
     gene            complement(1554..1898)
                     /locus_tag="ACFM5C_001064"
                     /pseudo
     CDS             complement(1554..1898)
                     /locus_tag="ACFM5C_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            complement(1891..2766)
                     /locus_tag="ACFM5C_001065"
     CDS             complement(1891..2766)
                     /locus_tag="ACFM5C_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3102 domain-containing protein"
                     /protein_id="HFC6068787.1"
                     /translation="MSNEVEVMDAVSVQNYQVAHSVMVMEQWGNGEVYNEATWIERGR
                     LAVRQTMEGMFELGRALIVLKEHTEHGRFMEIVKGQFGIGHNETARLMSATQRFATPQ
                     MQKAAPKLMDLGKSKLLELLVEEDVTLVGLAEGEEVNGMTFDDVDRMTVRELRVALRE
                     SRENLAAKDEVMKTKTAKIDELTEKLAKKQTVVREPKAEDVGSELAMQLTSLEVGIRS
                     QVSRLKDLFDQLNAHSEAHEISHQAKMVGTLNQIILDCEQLRESYALPTEAPTDNVPE
                     WLGGETGEGDESGND"
     gene            complement(2812..3102)
                     /locus_tag="ACFM5C_001066"
     CDS             complement(2812..3102)
                     /locus_tag="ACFM5C_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6068788.1"
                     /translation="MAESKRVQRLLRVFIALDEHPIIGLSNKDLSVGLGLTPSQVSRD
                     IDDLVASGLVIKLENGNYAYGIKTLQIAERFRRQHERLQSKIAEIGKRVNAD"
     gene            complement(3114..3359)
                     /locus_tag="ACFM5C_001067"
     CDS             complement(3114..3359)
                     /locus_tag="ACFM5C_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6068789.1"
                     /translation="MINHECINQPYGRILKFSRVQAKEMLTADELKENFAQNGQTLAQ
                     WARENGFKPRDVYLVIGGQRKGNYGKGYEIAKKLGLK"
     gene            complement(3352..3576)
                     /locus_tag="ACFM5C_001068"
     CDS             complement(3352..3576)
                     /locus_tag="ACFM5C_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6068790.1"
                     /translation="MEKPLNFKPIPYPQTRESAAGWFKRNGVCKAHWAKYFNLERTTV
                     EHLLRGKLKGNFGKSHEAAVLLGMKEKSDD"
     gene            3737..4219
                     /locus_tag="ACFM5C_001069"
     CDS             3737..4219
                     /locus_tag="ACFM5C_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6068791.1"
                     /translation="MSFQSVHFFVLSRDDLGCLCFDVEIIGRILPILQGIFMNNSSFF
                     GNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQFEKVGIDVQYVM
                     HGRRGETAVMPSETLNAEEQELLALFREAAAADREMILMVARRAEKKAQTALGKVSNG
                     "
     gene            4212..4844
                     /locus_tag="ACFM5C_001070"
     CDS             4212..4844
                     /locus_tag="ACFM5C_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068792.1"
                     /translation="MDKMNQFELCQKEHVNPFALSKQYLLVVTFVKSSSKNFQAALLW
                     ARSAKLFENLEIGKETIYCCAFDKTAEQAGMAGVFLNYIENWNGKQIYINGRIHSGSI
                     YDLLGVLDCYQKSQSCPNPKSHCCFVSDDIFLWHGSRPTFEISLDLTGKKKETSSAKK
                     FVMPCINFRHHRIEKETYLGNWNEQIAALAVKQNIDWCPSFDIENFRQYE"
     gene            4837..5031
                     /locus_tag="ACFM5C_001071"
     CDS             4837..5031
                     /locus_tag="ACFM5C_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6068793.1"
                     /translation="MNNYYLYRNCSSDVLWVKRIQRQIDGSLLLISDNSTYPPMPLAL
                     AEHPDIQIIGQVVQVSKDLN"
     gene            5055..5615
                     /locus_tag="ACFM5C_001072"
     CDS             5055..5615
                     /locus_tag="ACFM5C_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068794.1"
                     /translation="MKILALLIAATCALSACGGQAEEQPASAQPQEQAQSELKTMPVS
                     YTDYQSVANKGLADQKTGLTLPEHVVPADNAEGKNLLHDFSDGLTLTVDTDKADKITA
                     VRVVWNTDAVPQKAEKLSKAAAALIAATAPGDRTLLRDTGDQIKMAIDSHNAQKEPTR
                     EWARGGIAYKVTVTNLPSVVLTAKAE"
     gene            5756..6814
                     /locus_tag="ACFM5C_001073"
     CDS             5756..6814
                     /locus_tag="ACFM5C_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068795.1"
                     /translation="MKNKLTLRYFKITRCGYWSGSSKEPNHYEDLLKTLTHLETYVKG
                     KTIEETGISRDDKEPSTFLLDICKKNGLWLLAFWNPAAESSSDEIVSLNMKSKLGQVD
                     SSPVTAGNGKTFGFVSYFLIWPEHNFYSTILSPNATLAGRTEFEEYMLNFLWIDPNFI
                     EKTTYEETSTDGIIHTMERTNFKLPLKINGTPVPRFAGKLAKSPSEKEYVISNYDQVT
                     QVHNQCTVKVTSGQSSSGILKKMLPSFFGSTELFAPLKTIRVNHSVSAAFENKSNLKD
                     WIEDWEKNSFDLDKDDCGFKLKNDDKIYWIRGNVIKCELDVNLHKENGIYPAAKILDI
                     IDQRKDYVLNEFKLSDDS"
     gene            6804..7310
                     /locus_tag="ACFM5C_001074"
     CDS             6804..7310
                     /locus_tag="ACFM5C_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068796.1"
                     /translation="MILRNIFLICSAFMIGVAWYLGANIRFEEQWVLYEALRTTASII
                     FAVVGVWLAIVYPERLKSPFSQTFSSPVYRRGFKQLFSPVISSIFILSIVLLVGLLAP
                     LLKHIEAIIQYIPLCRKISFSLLASLTMWQIYTVLSVLVPLLNILSKNENDCHASNII
                     NKLKGEQN"
     gene            7414..7917
                     /locus_tag="ACFM5C_001075"
     CDS             7414..7917
                     /locus_tag="ACFM5C_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HFC6068797.1"
                     /translation="MSTKFNQFINRVLSHEGGYVNHPKDPGGETNWGITKRTAQANGY
                     NGSMRAMTREQAIGIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAVRMLQRAAG
                     VADDGIIGEISLKAINSLPENDLLLRFNAERLVFYTKLSTFTSFGKGWVRRVAQNLIH
                     ASADNTD"
     gene            8029..8361
                     /locus_tag="ACFM5C_001076"
     CDS             8029..8361
                     /locus_tag="ACFM5C_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068798.1"
                     /translation="MLDASPPQERGSRRETRSQKKASQITAFFRWLGGLVSNPATGKI
                     SHTKLWANVAAAAMTWKFVQAADAPEWLWWAYGAMVGGYALIKRGIAVVPQLAEVKKS
                     ANQEGGRQ"
     gene            8358..8768
                     /locus_tag="ACFM5C_001077"
     CDS             8358..8768
                     /locus_tag="ACFM5C_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HFC6068799.1"
                     /translation="MIEFVRAKKRLLWAFVLLLVWTCGYRYAADKAEAEQTALIATYR
                     HSSMVAAEQYALQLKKAQDERQRWYDFSQKQGRKPVKKQYPPQTKKAGYLKTKEELLA
                     ELACLKAEMAALKKLDALIYGKEVRQKERNSSQG"
     gene            8773..9321
                     /locus_tag="ACFM5C_001078"
                     /pseudo
     CDS             8773..9321
                     /locus_tag="ACFM5C_001078"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            9337..9522
                     /locus_tag="ACFM5C_001079"
                     /pseudo
     CDS             9337..9522
                     /locus_tag="ACFM5C_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(9841..10203)
                     /gene="ssrA"
                     /locus_tag="ACFM5C_001080"
     tmRNA           complement(9841..10203)
                     /gene="ssrA"
                     /locus_tag="ACFM5C_001080"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(10266..10871)
                     /locus_tag="ACFM5C_001081"
     CDS             complement(10266..10871)
                     /locus_tag="ACFM5C_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HFC6068800.1"
                     /translation="MNTDFQNILKQLGKQAQKEAAEKQAAEKNKQKQEQDFDFSQAVG
                     QVSPLKNRQQYYAPPDKPPIKVRPKDNRADEENYFYIGSTYNDPPASFSKNGQGKNDI
                     QRLKNGYYPVVTDVDLHGYTQEEAQKVLNEFIAFTQKRGVCGEIIHGSGLGSKGYKPV
                     LKNMTRNWLMQHPDVLAYAEPREGNDGCVRILLKRKLRQQD"
BASE COUNT         2764 a         2532 c         2781 g         3083 t
ORIGIN      
        1 cgaacctgtg tttgggtttc ggctgtcggg agggaaagga attttgcaaa ggtctcagag
       61 tgagtttatt ttggggcggc ggcgggtcgg gggcaagcgg cgtggggctt ttaggtttgg
      121 gggtgggtaa aaaatgccgt acccggcggg caggcttcgc actctgaagg tttcagacgg
      181 cgtttgtttt ttctatccaa tcgaggaact gccgccattt ttccagcggc atatcggccc
      241 gacgggtttc ggtatcgggt tcggcttccc agcggcctac ctgtatgtag tgcttcaccc
      301 cgacgatttg cgccaactcg gcctgtgtca gtttgcagcg gttgcgaagg gtgcgaaggt
      361 tgtaaggcgt gtagccgagt tccatgtcgt tgcggtttat tttgtttcgc atattttttt
      421 gactgccctg cggcaggttt cggtaaggac ggcggcaaat cgggcttcgt ctgccggttt
      481 gccgtcgaaa aaaataaaat cgtaaagggt gatgccgttt tcggaatggc ggtaatgccc
      541 gcccgggcat tcgccgtctg tctgcctgtg gattttggca atcaggcggg gatagcggca
      601 atgggtaatg aaacggcttg cgccgtcttg cccgataatc cattcggggt agcggttgaa
      661 tagtgcggct ctgttcattt tgttcgggtt gttcggggga taaagcccct cgcggggctt
      721 gtggtcaggc aaatttgaat atcagtgcca acacggcggc gatggcggta accagcccgg
      781 tggccgccat catgggatac catcgggatt cttgggctat tttacggatt cggcgttgat
      841 tttgtgcgcg tctgcaatga ttttggcgat ttcggcatct acttttctca gactggagtg
      901 tttcatttct tgttcgatta tgttcatcgt acttcctttc gtttttggcg gttgccgccg
      961 cttgtcggat ggtaggatgt ctgccatgtg tatatattga taccttttag gttttattgc
     1021 aagtgttttg ggcggcggct tcgtatgctt ggcggtggcg gcggctgtac cattcggcga
     1081 gttcgcgccg ctcttggagg cggtagctgt cggcggtcag gtagtggtgc aggcttgaga
     1141 agccggcgcg ttggagggcg gcgcggctga tgtggccgag ggcgaggtct gttgtgaggg
     1201 tgtcttttcc ggcggtcagg ctgatgttgg tgaagaggtg gcggaatccg tgcattgtgt
     1261 gtttggattt gccgggggtg ctgccgtcat agcccagtcg tcggatggcg ttgtgggcga
     1321 atttgatgct gatgtggtcg ggatgggggg cgggtttgcg ccgtgggcgg atgccgggga
     1381 aaaggtggat gttgtcgccg gtctgtgtgt gcagctctcg gagtatttct accgcccagt
     1441 ccgacagtgg gacggtaaag gggtgtttgg tcttcatgtc ggcggcgggg atgtgccata
     1501 accgggcggt gaggtcgatg tcttgccagc gggcggaaag cagtgcggag ggacgggatg
     1561 acttccccgg tttccccatc aatccgcgcc gcctcgattt ttccgttggc gcgcagcatt
     1621 tccaccgcct gccgcaccga catcaaccgc ttgccgttgc gcctcatcgc ctccaccaaa
     1681 accgccgaaa tcaatttggc ttcttccggt ttaagctccg tcttgcccgc atcgctgcgc
     1741 cgtttgcgcg tcggcttgac gctgaccgcc tccagcttgc ggtatagcgt ggcaaggctg
     1801 atgcccaatt cctgcgcctg ctgcttaaga tatgcagagc gtgcgccgcg ttccattgct
     1861 tccgcctgat tctcgactgc cttaagacgc tcaatcattg ccggattcat cgccttctcc
     1921 cgtttcaccg cccaaccatt ccggcacatt gtctgtcggt gcttcagtcg gcagggcata
     1981 gctttcgcgc agttgctcgc agtccaaaat aatttgattg agcgtgccga ccatctttgc
     2041 ctgatggctg atctcgtgtg cctcactgtg cgcattaagt tggtcgaaca aatctttcaa
     2101 acggctcact tgactgcgga taccgacctc aaggcttgtt aactgcatcg ccaactcact
     2161 gcccacgtct tccgccttcg gctctctgac aacggtttgc ttcttagcca gcttctcggt
     2221 cagctcatca attttggctg ttttggtttt catcacttcg tctttggcgg cgaggttttc
     2281 acggctttcg cgcagggcga cgcgcagctc gcgcaccgtc attcggtcca catcgtcaaa
     2341 ggtcatgccg ttgacttctt ctccttcggc aagtcccacc aacgtaacgt cttcttcgac
     2401 caagagttcc agcagctttg acttgcccaa atccatcagc ttcggcgcgg ctttctgcat
     2461 ttgcggcgtg gcgaaacgtt gggtagcaga catcaatcgg gcggtttcgt tatggccgat
     2521 accaaattga ccttttacaa tttccataaa tcgcccgtgt tctgtatgct ctttcagtac
     2581 aataagtgcg cgccccaatt caaacatgcc ttccatcgtc tgccgtaccg ccaagcggcc
     2641 gcgttcgatc caagtggctt cgttgtaaac ctcgccgtta ccccattgct ccatcaccat
     2701 cacgctgtgc gcgacttggt agttttgcac tgaaaccgca tccatcactt caacttcatt
     2761 gctcattttt cactctccaa atttccttac gtcaggaaat ttcaaaattc gttaatctgc
     2821 attcacccgc ttgccgattt cggcaatctt gctttgcagc cgttcatgct gccgcctgaa
     2881 ccgctcggcg atttgcaggg ttttgatacc gtaggcgtag ttgccgtttt caagcttgat
     2941 gaccaatccc gatgcaacca aatcatcaat atccctgctg acttgtgatg gcgtcagccc
     3001 cagtccgacc gataaatcct tattgctcag accgataatc ggatgttcgt caagcgcgat
     3061 aaagaccctc aatagccgtt gtaccctttt actttctgcc atccgcatcc tccttatttc
     3121 agtcccagct tcttggcaat ttcgtacccc ttgccgtaat tgcctttgcg ctgtccgccg
     3181 atcactagat acacatcgcg cggcttaaag ccgttctctc ttgcccactg cgccagcgtc
     3241 tggccgtttt gggcaaaatt ttctttcaat tcgtctgccg taagcatttc tttggcctgt
     3301 acgcgggaaa atttcagtat ccgtccgtac ggttggttaa tacactcatg attaatcatc
     3361 gcttttctcc ttcatcccca gcaaaaccgc cgcttcgtgg cttttgccaa aattgccttt
     3421 cagcttgccg cgcaagaggt gctccaccgt ggtgcgctct agattgaaat atttcgccca
     3481 atgcgccttg cacaccccgt tgcgcttaaa ccacccggcc gcgctctcgc gcgtttgcgg
     3541 atagggaata ggcttgaaat tcaaaggttt ttccatatta tttatgcctt tcgtgtgata
     3601 taatgtgttt gtttttaggt ctctttgcac gataaacatc cggtctgttg tgcagcagca
     3661 gggtcttggc ttgttttaaa gtaaacaagc tttttctcgt agctgggtgt atgtgatcca
     3721 tcatgagctg tcgcgcatga gctttcaaag tgttcatttt ttcgtccttt ctcgtgatga
     3781 tttagggtgt ttgtgtttcg atgtggaaat tataggaaga attcttccta ttttgcaagg
     3841 aatatttatg aataactctt ccttttttgg caaccgattg aaagaagaaa gaaaaaaatt
     3901 aaaaatgact caagctgaaa tcgctgaaaa atgtggggtt tcaggaagaa tgtgggggga
     3961 ttatgaacgt ggcatcagcc agccaaaagc ggaacttttc ttccaatttg aaaaggtggg
     4021 tatagacgtt caatacgtca tgcacggcag acgcggcgaa acagcggtca tgccgtctga
     4081 aaccctgaac gccgaagaac aagaactgct tgccctgttc cgcgaggcgg cagctgccga
     4141 ccgtgaaatg attctgatgg ttgcgcgcag ggcagagaaa aaagcccaaa ctgcgcttgg
     4201 taaagtgagt aatggataaa atgaatcaat tcgaattgtg ccaaaaagaa catgtcaatc
     4261 catttgcctt gtcaaagcaa tatctattgg ttgtaacatt cgtcaaatcc agcagtaaaa
     4321 attttcaggc agcattactt tgggcaagaa gtgccaaatt atttgagaat cttgagattg
     4381 gaaaagaaac catctattgc tgcgctttcg ataaaacagc agaacaggct gggatggccg
     4441 gggtattttt gaattatatt gaaaattgga atggcaaaca gatttacatc aatggccgaa
     4501 tccatagtgg cagtatttat gatttgttag gggttttaga ctgctatcaa aaatcacagt
     4561 cctgtcccaa ccctaaaagc cactgttgct ttgtttcaga cgacattttt ctatggcatg
     4621 gatcaagacc aacgtttgaa atcagtcttg atctaactgg aaagaaaaaa gaaacatcct
     4681 ctgcaaagaa atttgtgatg ccttgtatta atttccgtca ccataggatt gaaaaagaaa
     4741 cctacttagg aaattggaat gaacaaattg ccgcattggc agtaaaacaa aatatagatt
     4801 ggtgtccaag ttttgatatt gagaatttta gacagtatga ataattacta tctatatagg
     4861 aattgcagca gcgatgtgtt atgggtcaaa cgtatccaac gccaaatcga cggcagccta
     4921 ctcttgattt ctgacaattc aacctatcca cccatgccct tggcactggc ggaacacccc
     4981 gatattcaaa tcatcgggca ggtagtgcag gtatcaaaag acttgaacta gacacaatca
     5041 aaaagggaaa tagaatgaaa atactcgctt tattaattgc cgctacctgt gctttatctg
     5101 cgtgtggcgg ccaagctgaa gaacaaccgg catctgccca acctcaagag caggcacaat
     5161 ccgaattaaa aaccatgccg gtaagctata ccgactatca atcagtagcc aataaagggc
     5221 ttgccgacca aaaaactggt ctgacccttc cagaacatgt tgttcctgcc gacaatgcgg
     5281 aagggaagaa tctgctgcat gacttttcag acggcctcac attaaccgtt gataccgata
     5341 aagccgacaa aattactgcc gtccgagtag tttggaatac agatgcagtg cctcaaaaag
     5401 cggaaaaact gtccaaagcc gccgcagcct tgattgcggc aaccgcccca ggagaccgca
     5461 cactgctgcg tgataccggc gaccaaatca aaatggcaat tgacagccat aatgcgcaaa
     5521 aagagccaac ccgagaatgg gcgcgtggtg ggattgctta taaagtcact gttactaatt
     5581 tgccgagcgt ggttttgaca gcaaaagctg aataacctgc attacagcca caattaggag
     5641 cagacggaga tgatgtttat agagcctgct gagaataaat aactgataaa aaagctgtct
     5701 gaaaaggttt cggatagtta ggatagctat ctatttttaa tatattagag agaatatgaa
     5761 aaataaactg actttacgtt atttcaaaat aactcgttgc ggttattggt ctggttcttc
     5821 aaaagaacct aatcattatg aggacttatt aaaaacttta actcatttag agacatatgt
     5881 taaaggtaaa actattgaag agactggaat tagtcgtgat gataaagagc caagcacttt
     5941 cttgctcgat atctgcaaaa aaaatggtct gtggttgctt gctttttgga atcctgccgc
     6001 agaaagctct tcagatgaaa ttgtttcttt aaacatgaaa agtaaactag gtcaagttga
     6061 ttctagccca gtaacagcag gaaatgggaa aacttttggc ttcgttagtt attttcttat
     6121 ttggccagaa cataattttt actcaacgat tctttctcct aatgcaactt tagctggacg
     6181 aacagagttt gaagagtaca tgcttaattt cttgtggatt gatcctaatt ttatagaaaa
     6241 gactacctac gaagaaactt caacagacgg aataattcat accatggagc gaactaattt
     6301 taaattgcct cttaaaatta atggaactcc tgtgccacgt tttgcgggga aactagctaa
     6361 atctccttca gaaaaagagt atgtcattag taattatgac caagtaaccc aagtgcataa
     6421 tcaatgcacg gtaaaggtta cctctggaca aagttcaagt ggaattttga agaaaatgtt
     6481 accaagcttt tttggttcaa cagaattgtt tgctccatta aaaaccattc gtgtaaatca
     6541 ttctgtttct gctgcatttg aaaacaaatc aaatcttaag gattggattg aagactggga
     6601 aaaaaattct tttgatttag ataaagatga ttgtggcttt aagttaaaaa acgatgacaa
     6661 gatttattgg attcgaggaa atgtcatcaa atgtgaatta gacgtcaacc ttcataagga
     6721 aaatgggatt tatccagctg ctaaaattct agatataata gaccaaagga aagattacgt
     6781 tttaaacgaa ttcaaattaa gtgatgattc ttagaaatat tttcctaata tgctctgcat
     6841 tcatgattgg tgtagcctgg tatttaggtg ctaatatccg atttgaagag caatgggtat
     6901 tgtatgaagc cttgagaaca actgcatcaa ttatttttgc agttgttggg gtttggttgg
     6961 ctattgtcta tcccgaacga ttaaaaagcc cttttagtca aactttctcc tctccggtat
     7021 atcggcgtgg attcaaacag cttttttccc ctgttataag ttccattttt attttaagta
     7081 ttgtgttact tgttggtttg ttggctcctt tgctcaaaca tattgaggca ataattcaat
     7141 atatcccact ttgtcggaaa atctcattta gcctgttagc aagcttgacg atgtggcaaa
     7201 tttatacggt tttatctgta ttagtgcctt tgttaaatat tttaagtaaa aatgaaaatg
     7261 actgtcatgc atccaacatt attaacaagc taaagggtga acagaattag ctatgtgatt
     7321 tttagtgtaa actgctttta actcgtatta aaaggccact cttttaatac ctcctaaaat
     7381 ccctgtacct atcaatagat acagggattt tttatgtcca ccaaattcaa ccaattcatc
     7441 aaccgcgtcc tctcccacga gggcggttac gtcaatcatc ccaaagaccc cggcggcgaa
     7501 accaattggg gcatcactaa gcgcaccgca caggcaaacg gctacaacgg ctccatgcgc
     7561 gccatgacgc gtgaacaggc tatcggcatt taccgaaagg cgttttggga gcgttaccgc
     7621 gccgaccaaa tgccggaagc ggtcgcgttc caattttttg atgcctgcgt caaccacggt
     7681 tacggcaatg ccgtccgtat gctgcaacgc gccgcaggcg tggcggacga tggaatcatc
     7741 ggcgaaatca gcctcaaagc catcaattcc ctccccgaaa acgacctttt attgcggttc
     7801 aacgccgagc gtctggtctt ttataccaag ctcagtacgt tcacctcttt cggcaagggc
     7861 tgggtacgcc gtgtggcgca aaacctgatt cacgcgtctg cagataacac tgattaaagg
     7921 gagacaaacc atgtcaaaaa agtcactcat cgccctaatg accgcagcca tgcagcccga
     7981 tttcagccac agcgacctag gcattcgcta cgccatgccg actcagggat gttggacgca
     8041 agcccaccgc aagagcgggg tagccgccgc gaaacgcgca gccaaaaaaa agcgtcgcaa
     8101 ataactgcct ttttccgatg gctgggcggc ttggtctcta atccggccac aggaaaaatc
     8161 agccatacca aactttgggc aaacgtcgcc gcagccgcca tgacttggaa gttcgtgcag
     8221 gcggcggacg cgcccgaatg gctttggtgg gcatacggcg cgatggtcgg cgggtatgca
     8281 ttaatcaaac gcggcatcgc cgtcgtaccg cagttggcgg aagtcaaaaa atccgcaaat
     8341 caggaagggg ggcggcaatg attgaatttg tccgagccaa aaaacggctg ctttgggcat
     8401 ttgtgctttt gcttgtgtgg acgtgcggtt accgatacgc cgccgacaag gccgaagcgg
     8461 aacaaaccgc cctgattgcc acctatcggc attcttctat ggttgcggcg gaacaatatg
     8521 ccttgcagct taaaaaagcg caggacgaaa ggcagcggtg gtacgacttt tcccaaaaac
     8581 aaggaagaaa gcccgtgaaa aaacagtatc cgccgcaaac gaaaaaagcc ggctatctga
     8641 aaaccaagga agaactgctt gcggaattgg cttgccttaa agcggaaatg gctgccctaa
     8701 aaaagctcga tgccttaatc tatgggaaag aagtgcggca gaaagaacgc aactcgtcgc
     8761 agggttaagg caatgccatc cgttgaactg ctgttggtga ttgtcggact gccacgcggc
     8821 accttctatt accaattggc cgtccaatcg gcagaagaca aatatgccga tttgaaacgg
     8881 catatccatg atatttatcg acgacataag ggaagatacg gctaccggag gattgcggca
     8941 gccatccgtc acgcaggaac accggtcaat cacaagaaag tcagccgtct gatggcgaag
     9001 acggggctga aggcagtgat acggcggcgc aaataccgct cgttcaaagg agaagtcggc
     9061 aaaattgcgc cgaatatcct gcgacgctgt ttccatgcag aaaagccgaa tgagaaatgg
     9121 gtaacggacg ttaccgagtt caatgtaggc ggagaaaaga tatacctttc tccgattatg
     9181 gatttgttta acggggaaat cgtcagttac cgtattcaaa cccgcccgac tttcgatttg
     9241 gccgacgaga tactgaaagg tgcgccggag aaaccgggat cgtctgaaaa gccgatactg
     9301 cattcggatc aaggttggca atatcagatg tttttttata gtggattaaa tttaaatcag
     9361 gacaaggcga tgaagccgca gacagtacaa atagtacggc aaggcgaggc aacgccgtac
     9421 tggtttaaat ttaatccact atacaacaac gatagaatca agttgaaatt aaaagggctg
     9481 agccttgttc agtacagaat tcagtccctg aaagccgctt gattaaactg tccgactttt
     9541 tggggtcagt tcggcttcgg cattttttta tccgtttggg ggtaacttgt ttggaaagct
     9601 gcaagcttat aaataaagga ttacatttaa gttttgggta acctttttaa aaaaatgcgt
     9661 gatgactttt gcatttttaa ggcgtttttt ggggtaattc gtgaaaagtt accccaaaag
     9721 ttaccccata aatggcgaaa actcaagcat acgccagcat attcaaggca acaaaaaagc
     9781 cttgaaactg ttgaagttca aggctttttt gtgttgcagg atgctgctga aaatagggta
     9841 tggtggaggc ggggggaatc gaacccccgt ccgaaagtcc tctacaaagc gttctacata
     9901 cttagttgtg tctatttgaa aatcttattt ccatcatgcc gaccaacagg ccttttggaa
     9961 accagttacc ttaaatctca tttcctgcca agtaacccgg taggaaacca gtcaatgtaa
    10021 gatgacgttg cggtggcttt cgccacacag cccattgacc gactgctgca acggctagcc
    10081 ttaagcggct aaagcgtaag tttcgtcgtt tgcgactatt tgaattcagt gttttacggg
    10141 aatctgagac cccggtatgc ccgcatctgc ttcgcaaccc ccgtcgaaac caaggtcgcc
    10201 cccagaaatg gtttgcaaat tatacggata ttgtgcggtg ctgccaagtc tgtcggagaa
    10261 atttgtcagt cttgctgcct taatttgcgt ttgagcagga tgcggacgca gccgtcgttg
    10321 ccttcccggg gttcggcgta ggcgagtacg tcggggtgtt gcatcagcca gtttcgggtc
    10381 atatttttca gaacgggttt gtagcctttg gaacctaatc cgctgccgtg gatgatttcg
    10441 ccgcatacgc cgcgtttttg ggtgaatgcg atgaattcgt tgaggacttt ttgggcttct
    10501 tcctgtgtgt agccgtgcag gtcgacatcg gtaacgacgg gatagtatcc gtttttcagg
    10561 cgttggatgt cgttttttcc ctgtccgttt ttgctgaagc tggcgggcgg gtcgttgtat
    10621 gtgctgccga tgtagaagta gttttcttcg tcggcgcggt tgtctttggg acggactttg
    10681 atggggggtt tgtcgggcgg cgcataatat tgctgccggt tttttaatgg ggagacttgt
    10741 ccgactgctt gtgaaaaatc gaaatcctgt tcttgttttt gcttgttttt ttcggctgcc
    10801 tgtttttctg ccgcttcttt ttgggcttgt ttgcccagtt gtttgaggat gttttggaag
    10861 tcggtattca tattttttcc tgttatttgt ccgatggctg tttcgggcgg ggttttaatt
    10921 tgccggaatg tttgccaatc gggggaggat gattttgttg cctgcgtatg ttttttgaaa
    10981 gtgtgattgt atatcaaaaa gaaatgcggc aaccgtcggc agtgttgatt gccggaaatg
    11041 cggaccggtc gaaccgatat gcccgaacgc ctgataaagt tttaaaaacc tgccttgcga
    11101 agcaggctga cgtgttttgc caatcttgaa ttgccggaaa cgcgaaacac ggaaatctga
//
LOCUS       DAXHNP010000057        11153 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.057, whole genome shotgun sequence.
ACCESSION   DAXHNP010000057 DAXHNP010000000
VERSION     DAXHNP010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11153
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.057"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            39..462
                     /locus_tag="ACFM5C_001082"
                     /pseudo
     CDS             39..462
                     /locus_tag="ACFM5C_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221878.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            568..1131
                     /gene="pgsA"
                     /locus_tag="ACFM5C_001083"
     CDS             568..1131
                     /gene="pgsA"
                     /locus_tag="ACFM5C_001083"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFC6068801.1"
                     /translation="MPWNLPIFLTWLRVLLIPVMTALFYLPFPWFAEETINLTAAVIF
                     AVAALTDWFDGFLARLWKQTSDFGAFLDPVADKLMVAVSLLLLVKLDRTYVLFAMIII
                     GREITISALREWMAQMGKRNSVAVATVGKFKTAAQMLAIFLLLLNIPDFYGFNLVVIG
                     NVLMFIASLLTVWSMLYYLKMAWKEIA"
     gene            1211..1286
                     /locus_tag="ACFM5C_001084"
     tRNA            1211..1286
                     /locus_tag="ACFM5C_001084"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1244..1246,aa:Gly,seq:gcc)
     gene            1312..1387
                     /locus_tag="ACFM5C_001085"
     tRNA            1312..1387
                     /locus_tag="ACFM5C_001085"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1345..1347,aa:Gly,seq:gcc)
     gene            1411..1486
                     /locus_tag="ACFM5C_001086"
     tRNA            1411..1486
                     /locus_tag="ACFM5C_001086"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1444..1446,aa:Gly,seq:gcc)
     gene            1508..1583
                     /locus_tag="ACFM5C_001087"
     tRNA            1508..1583
                     /locus_tag="ACFM5C_001087"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1541..1543,aa:Gly,seq:gcc)
     gene            1610..1683
                     /locus_tag="ACFM5C_001088"
     tRNA            1610..1683
                     /locus_tag="ACFM5C_001088"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1642..1644,aa:Cys,seq:gca)
     gene            1786..1875
                     /locus_tag="ACFM5C_001089"
     tRNA            1786..1875
                     /locus_tag="ACFM5C_001089"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1820..1822,aa:Leu,seq:taa)
     gene            1979..3031
                     /gene="sohB"
                     /locus_tag="ACFM5C_001090"
     CDS             1979..3031
                     /gene="sohB"
                     /locus_tag="ACFM5C_001090"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HFC6068802.1"
                     /translation="MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVL
                     TDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSSETQK
                     SRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
                     RRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKK
                     HDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEV
                     ATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEAS
                     VEKLFAKLVNRRADVM"
     gene            complement(3082..3948)
                     /locus_tag="ACFM5C_001091"
     CDS             complement(3082..3948)
                     /locus_tag="ACFM5C_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HFC6068803.1"
                     /translation="MWKMLKHIAQTHRKRLIGTFSLVGLENLLMLVYPVFGGRAINAV
                     IAGGVWQALLYALVVLLMWLVGAARRIADTRTFTRIYTEIAVPVVLEQRQRQVPHSAV
                     TARVALSREFVSFFEEHLPIAATSVVSIFGACIMLLVLEFWVGVSAVGILALFLWLLP
                     RFAAISENLYFRLKNSLECDNHFIRKGDRRQLDRHYGLVARLRVLISNREAFGYLCVG
                     AAMGILFGFAFVMMTLKGYSSAGHVYSVGTYLWMFAMSLDDVPRLVEQYSNLKDIGQR
                     IEWSERNIKAGT"
     gene            complement(4035..4904)
                     /locus_tag="ACFM5C_001092"
     CDS             complement(4035..4904)
                     /locus_tag="ACFM5C_001092"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HFC6068804.1"
                     /translation="MSANEYTQIGWIGLGQMGLPMVTRLLDGGIEVGVYNRSPDKTAP
                     ISAKGAKVYGNTAELVRDYPVIFLMVSDYAAVCDILNGVRDGLAGKIIVNMSTISPTE
                     NLAVKALVEAAGGQFAEAPVSGSVGPATNGTLLILFGGSEAVLNPLQKIFSLVGKKTF
                     HFGDVGKGSGAKLVLNSLLGIFGEAYSEAMLMARQFGIDTDTIVEAIGGSAMDSPMFQ
                     TKKSLWANREFPPAFALKHASKDLNLAVKELEQAGNTLPAVETVAASYRKAVEAGYGE
                     QDVSGVYLKLAEH"
     gene            complement(4999..5916)
                     /gene="hisB"
                     /locus_tag="ACFM5C_001093"
     CDS             complement(4999..5916)
                     /gene="hisB"
                     /locus_tag="ACFM5C_001093"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HFC6068805.1"
                     /translation="MNLTKTQRQLHNFLTLAQEAGSLSKLAKLCGYRTPVALYKLKQR
                     LEKQAEDPDARGIRPSLMAKLEKHTGKPKGWLDRKHRERTVPETAAESTGTAETQIAE
                     TASAAGCRSVTVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDID
                     ISCKGDLHIDDHHTAEDIGITLGQAIRQALGDKKGIRRYGHSYVPLDEALSRVVIDLS
                     GRPGLVYNIEFTRALIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFK
                     AFGRALRMAVEHDPRMAGQTPSTKGTLTA"
     gene            complement(5913..7010)
                     /gene="hisC"
                     /locus_tag="ACFM5C_001094"
     CDS             complement(5913..7010)
                     /gene="hisC"
                     /locus_tag="ACFM5C_001094"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFC6068806.1"
                     /translation="MKSVRSFIRDDIQAMSAYQIADVPPGFAKLDSMESPVHPFAGHE
                     TLLQEWQARLAAAPIHLYPNPSGSGLQEALRSAFDIPDCADIALGNGSDELIQFITML
                     TAKPGAAMLAAEPSFVMYRHNAALYGMDYVGVPLNGDFTLNLPAVLEAVRKHRPALTF
                     IAYPNNPTGVCFTRAEIEAVIEASDGIVVVDEAYGAFNGDSFLPQAGSIPNLIVMRTV
                     SKIGFAGLRIGYAAGCPEVIGELQKILPPYNMNQLSLTTAKLALQHYGIISANIDSLK
                     NERERMFAELGKICRLNTFPSQANFITIRVPDADLLFDTLKQNRILVKKLHGAHPLLE
                     HCLRITVGSPAQNDAVLNIIRQLYCQPTDFL"
     gene            complement(7056..8345)
                     /gene="hisD"
                     /locus_tag="ACFM5C_001095"
     CDS             complement(7056..8345)
                     /gene="hisD"
                     /locus_tag="ACFM5C_001095"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFC6068807.1"
                     /translation="MKKLNTQSPDFQAGLKALLAFETAQNPETERIVADICADVQKRG
                     DAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTAARRVESYHQRQ
                     KMESWSYTDEDGTLLGQQITPLDRVGIYVPGGKAAYPSSVIMNAMPAHVAGVKEIIMV
                     VPTPKGERNDIVLAAAYVAGVTKVFTVGGAQAVAALAYGTETIPQVDKITGPGNAFVA
                     AAKRRVFGVVGIDMVAGPSEILVIADGTTPADWVAMDLFSQAEHDEIAQAILIGTSQA
                     YLDEVEAAMDRLIETMPRRDIIEASLGNRGAMILAKDLDEACEIANYISPEHLELSVE
                     NPQEWAKKIRHAGAIFMGRYTGESLGDYCAGPNHVLPTSRTARFSSPLGTYDFQKRSS
                     LIQVSEQGAQKLGETASVLAHGESLTAHARAAEFRMK"
     gene            complement(8342..9241)
                     /locus_tag="ACFM5C_001096"
     CDS             complement(8342..9241)
                     /locus_tag="ACFM5C_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HFC6068808.1"
                     /translation="MVAKIKKFSDSTLSVLNNGERRFYVYCLTDLKKDKILYIGKGCG
                     NRIFEHEWVASRSQDPVSGEIIDRKLKAISKCKKLGRYIISYHLTEVEALAAESALIH
                     FVKSVLGKKLKNKIAGHGPGGISVEELDRRFGFSSLPLNEINPDGLILAIKIHNAFDL
                     DTDEELDYLFDNQDDANLKSRTLGNWVIGKDVASKVKYVIGVHTGLQNAVVSAYEVDG
                     FETMVEETKNGRKQSRYRFRTTSRSEEVLAKLGLQQKCLPELKFGSGGEKAYIRPKTE
                     TETEQENIQTTPNPKIKKEKTKS"
     gene            complement(9345..9998)
                     /gene="hisG"
                     /locus_tag="ACFM5C_001097"
     CDS             complement(9345..9998)
                     /gene="hisG"
                     /locus_tag="ACFM5C_001097"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFC6068809.1"
                     /translation="MQDNALTIALSKGRIFEETLPLLAAAGIVPTEEPEKSRKLIIGT
                     NHENIRLVIVRATDVPTYVRYGAADFGIAGKDVLIEHGGTGLYRPLDLEIAKCRMMVA
                     VRKGFDYEAASQPGCRLKIATKYPEIAASHFAGKGVHVDIIKLYGSMELAPLVGLSDA
                     IVDLVSTGNTLKANGLEAVEHIVDISSRLVVNKAALKTKYALLEPIIQAFGGAVKAK"
     gene            complement(10077..10730)
                     /locus_tag="ACFM5C_001098"
     CDS             complement(10077..10730)
                     /locus_tag="ACFM5C_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFC6068810.1"
                     /translation="MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENA
                     AKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLT
                     YSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
                     QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL"
     gene            11007..11091
                     /locus_tag="ACFM5C_001099"
     tRNA            11007..11091
                     /locus_tag="ACFM5C_001099"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11041..11043,aa:Leu,seq:caa)
BASE COUNT         2473 a         2658 c         3163 g         2859 t
ORIGIN      
        1 atcgctgggt atggtttgcc gccataagct gtctgctgtt gtccgccgtt tttattgcac
       61 cttacctgac ggcatttcac gaacaagaaa aaacattcga atatgcggaa ttgaccgtta
      121 ccgcccccaa ccgcagcgga cgggcaatca aactggatgc agacgggcag cattaccggc
      181 tttcctgcta tgggttcgac ggtttgtgcg cggaaggcaa tatcggcaga accatcaggg
      241 cggagcaggt tagagccgtt ttaagcgaaa ccgtcggcaa aggtttttta aacggcgttc
      301 tgttggaata ccgcaacagt ggcagtgtct ataagcaata aagattttgc ccgcacggaa
      361 gaccgccttg tcgaagtgtt ggcacaacct gccgttttca gcctgaaact gggtattttg
      421 cttttattgc ccgccatttt cctgcgtttg aaaagaatgt gaaaacagat tggcggggcg
      481 ggggaatgcc catgcagcaa ttttacgttt tgggttatga ggataaccgt tataatcaca
      541 actttacagt ctgcacagag aaaaccgatg ccttggaatc tccccatctt cctcacatgg
      601 ttgagggtct tgctcattcc tgtcatgaca gccctttttt acctgccttt tccgtggttc
      661 gcggaggaaa cgattaatct caccgccgcc gtcatttttg ccgttgccgc cttaaccgac
      721 tggtttgacg gatttttggc aagactgtgg aaacagactt ccgatttcgg cgccttcctc
      781 gatcccgtcg ccgacaagct gatggttgcc gtatcgctac ttttactggt caaactcgac
      841 cggacctatg ttttgtttgc catgatcatt atcggcaggg aaattaccat ttccgcattg
      901 cgcgaatgga tggcgcaaat gggcaaaagg aacagcgttg ccgtcgccac cgtcggtaag
      961 tttaaaaccg ccgcgcaaat gctggcaatt ttcctgctgc tgctgaatat tcccgatttt
     1021 tacggattta atcttgttgt tatcggcaat gtattgatgt ttatcgcatc tttgctgaca
     1081 gtctggtcga tgctgtatta tctgaaaatg gcgtggaaag aaatcgcctg aaaaaaacat
     1141 aaaaatagct tgacggcaaa aacagaatcc ataataattg cgtctcttcg atgttggaga
     1201 atgaaatcgg gcgggaatag ctcagttggt agagcgcaac cttgccaagg ttgaggtcgc
     1261 gagttcgaga ctcgtttccc gctccaaaaa tttcattttc ccacaatcat tgcgggaata
     1321 gctcagttgg tagagcgcaa ccttgccaag gttgaggtcg cgagttcgag actcgttttc
     1381 cgctccaagt tttatttcaa acatatcaac gcgggaatag ctcagttggt agagcgcaac
     1441 cttgccaagg ttgaggtcgc gagttcgaga ctcgttttcc gctccaaaaa ccgatatgtt
     1501 tgaacgcgcg ggaatagctc agttggtaga gcgcaacctt gccaaggttg aggtcgcgag
     1561 ttcgagactc gtttcccgct ccaagttttt ttagataagc cagttttagg gcgagatagc
     1621 aaagtggtta tgcagcggat tgcaaatccg tctacgccgg ttcgattccg actctcgcct
     1681 ccattatcgt actatggcgg ggtggcagag tgtttatgct atgaggagtg caatcttcat
     1741 ataggccggt taaaatccgc gcccccgcct ccacctttca caaatgcccg ggtggtgaaa
     1801 taggtagaca caacggactt aaaatccgtc gggactaaac atcccgtgcc ggttcgattc
     1861 cggctccggg caccaagctg aaaatgacaa tgccgctcca agcggttatt tttttatctg
     1921 tcggacggtg atggacaata ttgacatgtt catgcctgaa caagaggaaa tccaatcaat
     1981 gtggaaagaa attttactga attacggtat tttcctgctc gaactgctta ccgtgttcgg
     2041 cgcaattgcg ctgattgtgt tggctatcgt acagagtaag aaacagtcgg aaagcggcag
     2101 tgtcgtactg acggattttt cggaaaatta taaaaaacag cggcaatcgt ttgaagcatt
     2161 ctttttaagc ggggaagagg caaaacatca ggaaaaagag gaaaagaaaa aggaaaaggc
     2221 ggaagccaaa gcagagaaaa agcgtttgaa ggagggtggg gagaaatctt ccgaaacgca
     2281 aaaatcccgc ctttttgtgt tggattttga cggcgatttg tatgcacacg ccgtagaatc
     2341 cttgcgtcat gagattacgg cggtgctttt gattgccaag cctgaagatg aggttctgct
     2401 tagattggaa agtccgggcg gcgtggttca cggttacggt ttggcggctt cacagcttag
     2461 gcgtttgcgc gaacgcaata ttccgctgac cgtcgccgtc gataaggtgg cagcgagcgg
     2521 tggttatatg atggcgtgtg tggcggataa aattgtttcc gctccgtttg cgattgtcgg
     2581 ttcggtgggt gtggtggcgg aagtaccgaa tatccaccgc ctgttgaaaa aacatgatat
     2641 tgatgtggat gtgatgacgg cgggcgaatt taagcgcacg gttactttta tgggtgaaaa
     2701 tacggaaaag ggcaaacaga aattccgaca ggaactggag gaaacgcatc agttgttcaa
     2761 gcagtttgtc agcgagaacc gccctcaatt ggatattgag gaagtggcaa cgggcgagca
     2821 ttggttcggt cggcaggcgt tggcgttgaa cttgattgac gagatttcga ccagtgatga
     2881 tttgttgttg aaagcgtttg aaaacaaaca ggttatcgaa gtgaaatatc aggagaagca
     2941 aagcctgatc cagcgcattg gtttgcaggc ggaagcttct gttgaaaagt tgtttgccaa
     3001 acttgtcaac cggcgggcgg atgtgatgta gtttgccgaa cggatggaaa tgccgtctga
     3061 agcgtgttca gacggcattt ttcaagttcc ggctttgatg ttccgttccg accactctat
     3121 ccgttgtccg atgtctttca aattggaata ttgttcgacc aatcgcggca cgtcgtccaa
     3181 actcatggca aacatccaca gataagtgcc gaccgaatag acatgccccg cgctgctgta
     3241 gcctttgagc gtcatcatca caaaagcaaa gccgaacaaa atacccatcg ccgcgccgac
     3301 gcagagatag ccgaaggctt cgcggttgga aatcagcaca cgcaggcgcg caaccagtcc
     3361 gtaatggcgg tccagctgcc gccggtctcc ttttcggata aagtggttgt cgcattccaa
     3421 gctgttcttc aggcggaaat acaggttttc gctgatggcg gcaaaacgtg gcaaaagcca
     3481 taaaaacaac gcaagtatgc ccaccgccga cacgccgacc caaaattcca gcaccagcag
     3541 catgatgcac gcgccgaata tggatacgac ggatgtcgcg gcaatcggca ggtgttcttc
     3601 aaaaaagctg acaaactcac gcgacagggc aacccgcgca gttaccgccg aatgcgggac
     3661 ttgtcgctgc cgctgttcca acacgaccgg cacggcgatt tcggtataaa tccgcgtaaa
     3721 cgtgcgcgta tcggcaatcc gccgcgccgc accgaccagc cacatcaaaa gcacaaccaa
     3781 agcgtacagc aacgcctgcc acaccccccc cgcaatcacg gcattgatcg cccggccgcc
     3841 aaacaccgga tacaccagca tcaaaaggtt ttccagtccg accagggaaa atgtgccaat
     3901 caatcgcttg cggtgggttt gggctatgtg tttcaacatt ttccacatat ttgttcccta
     3961 ttttttattt agcgtggggt gataaaaatg ccgtctgaaa tatgttcaga cggcattgtg
     4021 tttggaaaag gcaatcagtg ttctgccaat ttcaggtaaa cgccggaaac gtcctgttcg
     4081 ccgtagccgg cttcgactgc tttgcggtag ctggcagcaa cggtttcgac ggcgggcagg
     4141 gtgttgcctg cctgttcaag ctctttgacg gcgaggttga ggtctttgga ggcgtgtttg
     4201 agggcgaagg cgggtgggaa ttcgcggttt gcccacaggg attttttggt ttggaacatg
     4261 ggcgagtcca ttgccgagcc gccgatggct tcgacgatgg tgtcggtatc gatgccgaac
     4321 tgccgcgcca tcagcatcgc ttcgctgtac gcttcgccga aaatgcccaa gagcgagttc
     4381 aagacgagtt tcgcgcccga acctttgccg acatcgccga aatggaaggt ttttttgccg
     4441 acgagggaaa atattttttg cagcgggttt aaaacggctt cgctgccgcc gaacagaatc
     4501 agcagcgtgc cgttggtggc gggcccgacc gatccggaaa cgggtgcttc ggcaaactgt
     4561 ccgcctgcgg cttcgacaag tgctttgacg gcgaggtttt cggtcgggga gatggtgctc
     4621 atgttgacga tgattttgcc ggccaatccg tcgcggactc cgttcaggat gtcgcacacg
     4681 gcggcatagt cggaaaccat caggaaaatg acgggatagt cgcggacgag ttcggcggtg
     4741 ttgccgtaaa cttttgcgcc tttggcggag atgggggcag ttttgtcggg cgagcggttg
     4801 tatacgccga cttcgatgcc gccgtccaag agccgcgtta ccataggcag acccatttgc
     4861 cctaagccta tccagccgat ttgtgtgtat tcgtttgcgg acatgatgtt tactcctttt
     4921 ctgtttgtag tgtagtgtaa tcttatctgt tccgataccg tctgaaaagc ctgcgggtgt
     4981 ttcagacggt atggtttttt atgcggtcag cgtgcctttg gtcgaggggg tctgtcctgc
     5041 catgcgcggg tcgtgttcga ctgccatacg cagggcgcgc ccgaaggctt tgaatacggt
     5101 ttccgcctga tggtgggcgt ttttgccgct gaggttgtcg atgtgcaggg tcatcatact
     5161 gtggttgacg atgccgtgga aaaattcttc aaacaaatcg acatcgaaac gtccgattag
     5221 tgcgcgggta aattcgatgt tgtacacgag tccggggcgg ccggaaaggt cgatgacgac
     5281 gcggctgagg gcttcgtcga gcgggacgta ggaatgtccg taacggcgga tgcctttttt
     5341 gtcgccgagt gcctgccgga ttgcttgtcc gagtgtgatg ccgatgtctt cggcggtgtg
     5401 gtggtcgtcg atgtgcaggt cgcctttgca gctgatgtcg atgtcaatca tgccgtggcg
     5461 ggcgatttga tcgatcatgt gttcgaggaa gggtacgccg gtatccagcc tgcttttgcc
     5521 gctgccgtcg aggttgatgg agacggtgat ttgggtttcg caggtattgc ggttgacggt
     5581 aacgctgcgg cagccggcag cagatgcggt ttcggcaatt tgggtttcgg cagttccggt
     5641 gctttctgcg gcggtttcgg ggacagtgcg ttcgcggtgt tttctgtcga gccagccttt
     5701 gggtttgccg gtgtgttttt cgagttttgc catcaggctg ggacggatgc cgcgtgcatc
     5761 tgggtcttct gcctgctttt caaggcgttg tttgagtttg tagagtgcga cgggggtacg
     5821 gtagccgcag agtttggcga gcttggacag cgaacctgct tcttgggcga gggtcagaaa
     5881 gttgtgcagt tggcgttgtg ttttagtcaa attcatagga aatccgttgg ttggcagtaa
     5941 agttggcgaa tgatgttgag aacggcatcg ttttgtgcgg ggctgcctac ggtaatgcgc
     6001 aggcagtgtt ccaaaagcgg gtgcgcgcca tgcagttttt taaccaagat gcggttttgt
     6061 ttgagcgtgt caaacaacaa atcggcatcg ggtacgcgta tggtaatgaa gtttgcctga
     6121 cttggaaagg tgttcagacg gcatattttg cccaattcgg cgaacatccg ttcgcgttcg
     6181 tttttcaggc tgtcgatgtt ggcagagatg atgccgtagt gttgcagggc gagtttggcg
     6241 gtggtcaggc tcagttggtt catattgtag ggcggcagga ttttttgcag ttcgccgatg
     6301 acttcgggac agcctgccgc atagccgata cgcagtccgg caaaaccgat tttgctgacg
     6361 gtacgcatga cgatgaggtt gggaatgctg cccgcctgcg gcaggaagct gtcgccgttg
     6421 aatgcgccgt aggcttcgtc gacgacgacg atgccgtctg aagcttcgat gacggcttcg
     6481 atttcggcac gcgtgaaaca tacgccggtg gggttgttgg ggtaggcgat aaaggtcagg
     6541 gcagggcggt gcttcctgac ggcttcgagg acggcgggca ggttgagggt gaaatctccg
     6601 ttcagtggaa cgccgacata atccatgccg tacagcgcgg cgttgtggcg gtacatgacg
     6661 aaactgggtt cggctgccaa cattgccgcg cccggtttgg cggtcagcat cgtgatgaac
     6721 tgtatcagct cgtccgagcc gttgcccagc gcgatgtcgg cgcagtcggg aatgtcgaac
     6781 gccgaacgta atgcttcctg taaaccgctg ccggagggat tggggtaaag atggatgggc
     6841 gcggcggcaa gccgtgcctg ccattcctgc aacagcgttt catgtccggc aaaagggtgg
     6901 acgggacttt ccatcgaatc gagtttggca aagccgggcg gaacgtcggc aatctgatat
     6961 gccgacatag cttgtatgtc gtcgcggatg aaggagcgga cggatttcat cgtgtttcct
     7021 taatggttgg aatatgcctg tacgccgttt cggcattatt tcatacggaa ctctgccgcg
     7081 cgggcgtggg cggtcaggct ttcgccgtgt gccagcacgc tggcggtttc gcctaatttt
     7141 tgcgcgccct gttccgaaac ctgaatcagg ctggagcgtt tttggaaatc atatgtcccc
     7201 aaaggcgagg aaaagcgggc ggttcggctg gtgggcaata catggtttgg accggcgcag
     7261 tagtcgccga ggctttcgcc ggtgtagcgt cccatgaaaa tcgcaccggc gtggcggatt
     7321 tttttcgccc attcctgcgg attttcgact gacagttcca agtgttcggg ggaaatgtag
     7381 ttggcgattt cgcaggcttc gtccaagtct ttggcgagta tcatcgcgcc cctgttgccg
     7441 agcgaggctt cgatgatgtc gcggcgcggc atagtttcga tcaggcggtc catagcggct
     7501 tctacttcgt cgagatacgc ttgcgacgtg ccgatgagga tggcttgggc aatttcgtcg
     7561 tgttcggcct ggctgaacaa atccatcgcc acccaatcgg caggtgtcgt gccgtcggcg
     7621 atgaccagga tttcagacgg ccccgccacc atgtcgatgc cgaccacgcc gaacacgcgg
     7681 cgtttggcgg cggcgacgaa ggcgttgccc ggaccggtga ttttatcgac ttgggggatg
     7741 gtttccgtgc cgtaggcgag ggcggcaacc gcctgcgcgc cgccgacggt gaagactttg
     7801 gttacgccgg cgacgtatgc ggcggcaagc acgatgtcgt tgcgttcgcc tttcggtgtc
     7861 ggcacgacca tgatgatttc tttcacgcct gcgacgtggg cgggcatggc gttcatgatg
     7921 acggaactcg gatatgccgc cttgccgccg gggacgtaaa tgccgacgcg gtcaagcggg
     7981 gtaatctgtt gtcccaacag cgtgccgtct tcatcggtgt agctccacga ttccattttt
     8041 tggcgttggt ggtagctttc gacacggcgg gcggcggtct gcaatgccgt ctgaacgtcg
     8101 ttcggaatgc gctcgaacgc cgcgttcaaa tcggcttgcg tgagtattaa atcatcgatg
     8161 cttttagcgt ttgtctgatc gaatttgttg gtgtattcaa tcaaagccgc atcgccgcgc
     8221 ttttgcacgt cggcgcaaat gtcggcgacg atgcgttcgg tttcggggtt ttgcgcggtt
     8281 tcaaaagcca gcagggcttt gagtccggct tggaaatcgg gcgattgggt gttgagtttt
     8341 ttcatgattt ggttttttcc ttttttattt ttggattggg ggtcgtctga atattctctt
     8401 gttcagtttc tgtctctgtt ttgggtctga tatacgcttt ttctcccccg ctaccaaact
     8461 tcaattcggg caggcatttt tgttgcagac cgagtttggc taatacctct tcgctacgag
     8521 aggtagtgcg gaaacggtaa cgggattgtt ttctaccgtt tttggtttcc tcaaccattg
     8581 tttcaaaacc gtccacttcg tatgcactga caacagcgtt ttgcagaccg gtgtgaacgc
     8641 cgataacgta tttcactttt gaagcaacat ctttaccgat aacccagttg cccaacgtac
     8701 gcgatttgag gttggcatcg tcttggttgt cgaaaaggta gtctaattct tcgtcagtat
     8761 ctaaatcgaa agcattgtgg attttgatgg cgagaatcag cccgtcgggg ttaatctcgt
     8821 taagtgggag agaagagaat ccaaagcggc gatctagttc ttctacgcta ataccacccg
     8881 gaccatgccc ggcaatttta tttttgagtt ttttacccaa gacagattta acaaaatgaa
     8941 ttaaggcaga ttcggcggcg agtgcttcga cttcagtcag atgatagctg atgatatagc
     9001 gaccgagttt cttgcatttg gagatggctt tgagtttccg atcgataatc tcgccggaga
     9061 ctgggtcttg tgaacgacta gcaacccatt catgctcgaa gatacgatta ccgcagcctt
     9121 tgccgatgta gaggattttg tcttttttca ggtcggtcag acaatagaca taaaaccgac
     9181 gctcgccgtt attcaaaacg gaaagggttg aatctgagaa tttttttatt tttgcaacca
     9241 ttttaacttc tcctatacag tttactgccg gtgatatttt cagacgacct gtcggcggga
     9301 acggataggg tcgtctgaaa acgcatcttt attcaaatgg atgcttactt cgccttcact
     9361 gcgccgccga acgcctgaat aatcggctcc agcagcgcgt atttcgtttt caaagcagcc
     9421 ttgttgacca ccaggcggct ggaaatgtcg acgatgtgtt cgactgcttc caagccgttt
     9481 gccttcaagg tgttgcccgt cgaaaccaag tccacaatcg catcgctcaa gccgaccagc
     9541 ggcgcaagtt ccatcgagcc gtacagtttg ataatgtcca catggacacc cttgccggca
     9601 aaatgagatg ccgcgatttc aggatacttc gtggcaatct tcagacggca tccgggttgc
     9661 gaagctgctt cgtaatcaaa ccctttacgc acagcaacca tcatgcggca cttggcaatc
     9721 tccaaatcca aaggccggta aagccccgtg ccgccgtgtt cgatcagcac gtctttgccc
     9781 gcaatgccga agtccgccgc gccgtagcgg acataagtcg gcacatcggt tgcgcggaca
     9841 atgacaaggc ggatgttttc atggttcgtc ccgataatca gcttgcgcga tttttcaggc
     9901 tcttcagtcg gaacaatgcc ggcagcggca agcagcggca gcgtctcctc aaaaatgcgc
     9961 cccttggata aggcgatggt caaagcatta tcctgcatgg tgtggatgtc ctttgtcggt
    10021 tgaaacaata atgccgtctg aataggcgcc gacggtgcag acggcatacg gttttatcag
    10081 agcagagtcc ttacatcggc agcaatcgtt tccggctcgc ttccgtaagg cgagaaaatg
    10141 gcaacctcac cgtttttgtc gatgagatac gcaccggaag agtggtcgac caaatagttt
    10201 tcgctgtcgt ctttttgatt gactttggca gaaaccacgc ggtattgctg cttgatgacc
    10261 ggcaggtttt ggtcgcccgt tgccgtcaga ccgataaagt ccggattgaa ctgtttggca
    10321 tacttgccga tgatttcagg cgtgtcgcgt tccggatcga tgctgacgaa caccactttc
    10381 acgtccttag cctgcccgcc caactgcttc aacgtgtcgc tgtacgtcaa aagctctgtc
    10441 gggcagacat cgggacagtg cgtaaagccg aaagacagaa tcacgacctt gcctttcaaa
    10501 tcgctcaggc tgaaaggctt gccttcgccg tcggtcagcg tgaaatcgcc gccgatgtct
    10561 tccttacgca tatccgtacc gcgcgtttgc ggctttgccg cattttccgc agctgacgcg
    10621 gatgcacttg aagaagcggc ttgcgccgca ctgttgtctt gaggtttgca ggcggcaagc
    10681 gcggcaagta cgaaaacgcc cggcaaaaag gaacgcggta cggaaaacat gacaatctcc
    10741 caagaataaa tagcaaaacc tgattcgtac ggaatttgaa tatttccatc ttaacgcgtt
    10801 tggcagattt aatgtagtat ttttttacgt tgtttgcacg gcaggaattg ccgaatcata
    10861 cagaatcttt ggagcggaaa gaacagtaag attaaaataa taaaaattct atttaaaatc
    10921 aaaaataaaa taaaaacaga taaaataatt tcaaaaaaaa ggtttacaga atttcaaaag
    10981 ccattataat gacgacttct tcaccagccc aggtggcgaa attggtagac gcaggggact
    11041 caaaatcccc cgccgcaagg tgtgtcggtt cgagtccgac cctgggcacc acaaccgctt
    11101 ttagagcggt tatttttttg tctattgctg tttaatgaaa tagataaaac taa
//
LOCUS       DAXHNP010000058        11065 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.058, whole genome shotgun sequence.
ACCESSION   DAXHNP010000058 DAXHNP010000000
VERSION     DAXHNP010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11065
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.058"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(60..1616)
                     /gene="dnaA"
                     /locus_tag="ACFM5C_001100"
     CDS             complement(60..1616)
                     /gene="dnaA"
                     /locus_tag="ACFM5C_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFC6068811.1"
                     /translation="MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGK
                     NQFACNMLKSQFAGKIEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHA
                     GSEEMPVQEVLLDELPSEEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEV
                     LAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPF
                     FLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQY
                     KQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKS
                     RFSWGLTLELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNR
                     VGASSRFMNRPVIDIDLARTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKR
                     TRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQD
                     YEKLLILIQN"
     gene            1909..2043
                     /gene="rpmH"
                     /locus_tag="ACFM5C_001101"
     CDS             1909..2043
                     /gene="rpmH"
                     /locus_tag="ACFM5C_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003816025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFC6068812.1"
                     /translation="MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLAV
                     "
     gene            2046..2411
                     /gene="rnpA"
                     /locus_tag="ACFM5C_001102"
     CDS             2046..2411
                     /gene="rnpA"
                     /locus_tag="ACFM5C_001102"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFC6068813.1"
                     /translation="MDYRFGRQYRLLKTDDFSSVFAFRNRRSRDLLQVSRSNGNGLDH
                     PRIGLVVGKKTAKRANERNYMKRVIRDWFRLNKNRLPPQDFVVRVRRKFDRATAKQAR
                     AELAQLMFGNPATGCRKQA"
     gene            2477..2698
                     /gene="yidD"
                     /locus_tag="ACFM5C_001103"
     CDS             2477..2698
                     /gene="yidD"
                     /locus_tag="ACFM5C_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFC6068814.1"
                     /translation="MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKK
                     YGAFKGGRLAIKRIARCHPFGGHGHDPVP"
     gene            2870..4507
                     /gene="yidC"
                     /locus_tag="ACFM5C_001104"
     CDS             2870..4507
                     /gene="yidC"
                     /locus_tag="ACFM5C_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFC6068815.1"
                     /translation="MDFKRLTAFFAIALVIMIGWEKMFPTPKPVPAPQQTAQQQAVTA
                     SAEAALAPATPITVTTDTVQAVIDEKSGDLRRLTLLKYKATGDENKPFILFGDGKEYT
                     YVAQSELLDAQGNNILKGIGFSAPKKQYSLEGDKVEVRLSAPETRGLKIDKVYTFTKG
                     SYLVNVRFDIANGSGQTANLSADYRIVRDHSEPEGQGYFTHSYVGPVVYTPEGNFQKV
                     SFSDLDDDAKSGKSEAEYIRKTPTGWLGMIEHHFMSTWILQPKGGQSVCAAGDCRIDI
                     KRRNDKLYSTSVSVPLAAIQNGAKSEASINLYAGPQTTSVIANIADNLQLAKDYGKVH
                     WFASPLFWLLNQLHNIIGNWGWAIIVLTIIVKAVLYPLTNASYRSMAKMRAAAPKLQA
                     IKEKYGDDRMAQQQAMMQLYTDEKINPLGGCLPMLLQIPVFIGLYWALFASVELRQAP
                     WLGWITDLSRADPYYILPIIMAATMFAQTYLNPPPTDPMQAKMMKIMPLVFSVMFFFF
                     PAGLVLYWVVNNLLTIAQQWHINRSIEKQRAQGEVVS"
     gene            complement(4588..5313)
                     /locus_tag="ACFM5C_001105"
     CDS             complement(4588..5313)
                     /locus_tag="ACFM5C_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFC6068816.1"
                     /translation="MSEGMMSPVLYLIPTPLGTPDTPCLLPHEQQAIVGLTDFVVEAE
                     KTARAHLKHLGVTMPIRELNLQTLNEHTDLKTLLELLKPLQEGRSMGIVSEAGCPAVA
                     DPGANLVALAHKHGFEVRPLVGPSSLLLALMASGANGQSFAFKGYLPSEKNERIQSLK
                     ALEQRSRQQNETQLFIETPYRNDVLLADAVENLHSETRLCTATDLTLPTQEIISQTVV
                     QWRKRKEMPNLKKRPTIFVMYAG"
     gene            complement(5360..5950)
                     /locus_tag="ACFM5C_001106"
     CDS             complement(5360..5950)
                     /locus_tag="ACFM5C_001106"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HFC6068817.1"
                     /translation="MGLELPLILGTSSVFRREQMERLGIAFQAASPDFDETPMLGESA
                     PQTALRLAEGKARSLTGRFPKALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGRE
                     IEFYSAVVLLNTVTGRMQRHIDKTVVVMRQLDELHILRYLEREPDAVYCSCALKSEDL
                     GALLIERIESTDPNALIGLPVFRLVDFLKNEGVDVL"
     gene            6098..6601
                     /locus_tag="ACFM5C_001107"
     CDS             6098..6601
                     /locus_tag="ACFM5C_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HFC6068818.1"
                     /translation="MSDPNLIDPEIFAAEGQNLQGSFLLEELDERVSSHDYPADRQTK
                     ISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEESLDES
                     MLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDCGDNGTLEEVNRDKPNPFAV
                     LAGLKSN"
     gene            6635..6814
                     /gene="rpmF"
                     /locus_tag="ACFM5C_001108"
     CDS             6635..6814
                     /gene="rpmF"
                     /locus_tag="ACFM5C_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011765354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFC6068819.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDALTAPALSVDSTTGEVHRPHHISP
                     NGMYRGRKVVKAKGE"
     gene            6989..7516
                     /locus_tag="ACFM5C_001109"
     CDS             6989..7516
                     /locus_tag="ACFM5C_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFC6068820.1"
                     /translation="MKQKIWYTYDDIHRVIKALAEKIRNADIKYDAMIAIGGGGFIPA
                     RMLRCFLEIPIYAVTTAYYDSDNEGQVTEEVKKVQWLDPVPEALRGKNVLVVDEVDDS
                     RVTMEFCLTELLKEDFGTIGVAVLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDA
                     LDIDEHNRLAEAGRG"
     gene            7604..8659
                     /gene="plsX"
                     /locus_tag="ACFM5C_001110"
     CDS             7604..8659
                     /gene="plsX"
                     /locus_tag="ACFM5C_001110"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFC6068821.1"
                     /translation="MITLAVDAMGGDQGLAVTVPGATAFLQAHPDVRLIMTGDETQLR
                     QALTAAGAPMERIDICHTTQVVGMDESPQSALKNKKDSSMRVAINQVKEGKAQAAVSA
                     GNTGALMATARFVLKTIPGIERPAIAKFLPSDTDHVTLALDLGANVDCTPEQLAQFAV
                     IGSELVHALHPQKGQPRVGLVNVGTEDIKGTDTVKQTYKLLQNSKLNFIGNIESNGIL
                     YGEADVVVADGFVGNVMLKTIEGAVKFMSGAIRREFQSNLFNKLAAVAALPALKGLKN
                     KLDPRKFNGAILLGLRGIVIKSHGGTDETGFRYALEEAYHEAKSAGLSKIEQGVAEQL
                     AALETAKAVQNENVGGL"
     gene            8795..9046
                     /locus_tag="ACFM5C_001111"
     CDS             8795..9046
                     /locus_tag="ACFM5C_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6068822.1"
                     /translation="MKTLEKRMKALDKRMMKFGKSLEGRLDARLIESALDYIHYSERF
                     LAFEILCTYIEDFDVRLTEQESREISFINKEFEIESTSD"
     gene            9073..9489
                     /locus_tag="ACFM5C_001112"
     CDS             9073..9489
                     /locus_tag="ACFM5C_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068823.1"
                     /translation="MKTSTVVFGGFFMADNRERIQIPVLENPGIREINHFFSVSNFEK
                     KAGVLVFRIIPEPKFGNTELTIYFEEGCYLPMIQTILEDGDIEVKNLKTENYSGNTME
                     IWGDFYPIEHISKNISTIQNIISEFMIQKQTPAPII"
     gene            9509..9712
                     /locus_tag="ACFM5C_001113"
     CDS             9509..9712
                     /locus_tag="ACFM5C_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068824.1"
                     /translation="MPSEACLVFRRHFLRLKQRIGNPALPIHGNLHLKTICIPNHTPI
                     PVSVICTLSVLGNHRFFAYNSRI"
     gene            9739..10701
                     /locus_tag="ACFM5C_001114"
     CDS             9739..10701
                     /locus_tag="ACFM5C_001114"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFC6068825.1"
                     /translation="MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRH
                     IAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGIT
                     NGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFG
                     DGAGAVVLSASDTPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKF
                     AVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHG
                     NTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY"
     gene            10748..>11065
                     /locus_tag="ACFM5C_001115"
     CDS             10748..>11065
                     /locus_tag="ACFM5C_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HFC6068826.1"
                     /translation="MKRQAFFKLMACAAFLSAVSLRLPVLGACYAILSLYAFALYGID
                     KRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLA
                     TLIL"
BASE COUNT         2855 a         3285 c         2560 g         2365 t
ORIGIN      
        1 ctatatcttt acccttcgga cggcatgggc aatatcatgt cgtctgaaaa cgttttccat
       61 cagttttgaa tcagaatcag cagcttttca taatcctgag ccaattccgg atcttcttcg
      121 cgcagtttcg ccactgccct gatgccgtgc ataacggtcg tatggtcgcg tccgccgaac
      181 gaatcgccga tagacggcag gctcaaagtg gtcagttctt tggtcaggct catcgccacc
      241 tggcgcggac gggcaatgtt tcgtgtccgt ttcttaccga gcacatcgct gattttgatg
      301 cggtaatatt tcgcaacggc atcaataata atatcggcgg tgatgacttt gtgcttctcg
      361 gcaataatgt cctgcaaagc agtacgcgcc aaatcgatgt cgatgacggg acggttcata
      421 aagcggctgc tcgctccgac gcggttgaac gcgccttcaa gctcacgcac gttggaacgg
      481 atcagattgg caatgaacag cgcggcttcg tcttcaatac tgatgcccgc cgcttccgcc
      541 tttttctgca aaatggcgat acgcatttcc aattcgggcg gctcgagttc caaagtcagt
      601 ccccatgaaa aacgggattt gaggcggtcg tccatacctt cgattttggc gggtaaaaca
      661 tcgcaagtga ggatgagctg ttttttctcg ttatggaaat gattgtacag atagaagaat
      721 tcctccatcg tacggtcttt gcctttgatg aactggatgt cgtcgataat cagcaggtcg
      781 tattgcttgt attgctgctt gaacacgtcg taggtattgt tgcgaaccgc cttcataaag
      841 ctgcggatat agtcgtccga atgcatatag cgcactttgg catcgggacg gtttttcaaa
      901 agctcgttgc cgaccgcctg taccaggtgg gttttgccca aacccgtgct gccgtacagg
      961 aaaaacgggt tgtagctctg ccccgggctt tccgcaatcg cctgcgccgc agccgccgca
     1021 aggcggttgc ccttgccttc gaccaatgtg tcgaacgtat agtccggcga cagattggtc
     1081 tgctcgtaac gtgcctcttc cgcatcgcgc tgcgcatccg tccgcgcttt cgcaagcacc
     1141 tccgattccg gacgggaagc aggttcggca gtatggcgcg gctcatgcgg gaggtttttc
     1201 atacgttccg ccagaatatc cgccgccgtt ttcgacgcag cgggtttgac aggctcttca
     1261 gacggcagct cgtccaacag aacctcctgc acaggcatct cctccgaccc cgcgtgcaag
     1321 gacggctcgg caggttcgac agcaccttca accgccgcca tctcataacg cacgccttct
     1381 cctggtttga atacgaaggc ggaacggcca gcagccaact cttccctcac cgcttctatt
     1441 ttcccggcaa actggctctt aagcatattg caggcaaact ggttcttgcc gtacaccacc
     1501 catacgccac cctcctcacc gacggtaagg ggcgcaatcc attgcgcaaa ctgcccttga
     1561 ggcaacatat cgtgaagacg gcggaggcac agcggccaaa actctgctaa tgtcatggat
     1621 aagctcgaat cggtaaaaat gaaatcgaaa acaaagaaaa tataatattt tcaaaaagaa
     1681 aacaaatctg ttgaacacac atcggttcaa aatgcagcga accgaattat accgactcgc
     1741 cgatatttta tccacaaccc gtgcaaaatt tatccacaga aaggcggcag aaatccgcag
     1801 gcaatcgggc aatcctcctg caaagtttct atattgattg acaaaagcgg caaattggag
     1861 tgtaattcac ggtttaatta tctacccatt ctatttttag gaaacatcat gaaacgcact
     1921 tatcaacctt ccgttaccaa acgcaaacgc acccacggct tcctggtgcg ctccaaaaca
     1981 cgcggcggcc gcgcagtatt ggctgcacgc cgcgccaaag gccgcaaacg cctggcggta
     2041 taattttgga ctaccgcttc ggaaggcagt accgcttgtt gaaaacggat gatttttcat
     2101 ccgtttttgc attcagaaac cgccgcagcc gcgacctgct gcaagtttcg cgttcaaacg
     2161 gcaacgggct ggaccatccc cgcatcggtc tggtggtcgg caaaaaaacc gccaaacgcg
     2221 ccaacgaacg aaattatatg aagcgcgtca tccgcgactg gttcagattg aacaaaaacc
     2281 ggctgccgcc gcaggatttc gtcgtgcgcg tccgccgtaa attcgacagg gctaccgcaa
     2341 aacaggcaag ggcggaactg gcacaactca tgttcggcaa ccccgcaacc ggatgcagga
     2401 aacaggcatg atcagaacgg tactctgcag gcaaggttca gacggcaacg ggtttcccat
     2461 actaaggaac atcccgatga acttcctatt gtccaaactc ctgctgggac tgatacggtt
     2521 ctaccaatat tgcatcagcc cgctgattcc gccgcgctgc cgttatacgc cgacctgttc
     2581 gcaatacgcg gtcgaagcgg tcaaaaaata cggcgcattc aaaggcggcc ggctcgccat
     2641 caagcgcatt gcacgctgcc accctttcgg cggacacgga cacgaccccg ttccctgacc
     2701 cgacgcaata ttcaaattgc acgctttcct tttatttccc atcggtttct atataatgcc
     2761 gtctgaactt tcgggctggc ggcacgaccg tcgggtatga agcccgccct tattccccgt
     2821 ctatcggaac acgcaacctg cggcatttcc gaccattcag gaaactctta tggattttaa
     2881 aagactcacg gcgtttttcg ccatcgcact ggtgattatg atcggatggg aaaagatgtt
     2941 ccccactccg aagcccgtcc ccgcgcccca acagacggca caacaacagg ccgtaaccgc
     3001 ttccgccgaa gccgcgctcg cgcccgcaac gccgattacc gtaacgaccg acacggttca
     3061 agccgtcatt gatgaaaaaa gcggcgacct gcgccggctg accctgctca aatacaaagc
     3121 aaccggcgac gaaaataaac cgttcatcct gtttggcgac ggcaaagaat acacctacgt
     3181 cgcccaatcc gaacttttgg acgcgcaggg caacaacatt ctaaaaggca tcggctttag
     3241 cgcaccgaaa aaacagtaca gcttggaagg cgacaaagtt gaagtccgcc tgagcgcacc
     3301 tgaaacacgc ggtctgaaaa tcgacaaagt ttatactttc accaaaggca gctatctggt
     3361 caacgtccgc ttcgacatcg ccaacggcag cggtcaaacc gccaacctga gcgcggacta
     3421 ccgcatcgtc cgcgaccaca gcgaacccga gggtcaaggc tactttaccc actcttacgt
     3481 cggccctgtt gtttataccc ctgaaggcaa cttccaaaaa gtcagcttct ccgacttgga
     3541 cgacgatgcc aaatccggca aatccgaggc cgaatacatc cgcaaaaccc cgaccggctg
     3601 gctcggcatg attgaacacc acttcatgtc cacctggatc ctccaaccca aaggcggaca
     3661 aagcgtttgc gccgctggcg actgccgtat cgacatcaaa cgccgcaacg acaagctgta
     3721 cagcaccagc gtcagcgtgc ctttagccgc tatccaaaac ggtgcgaaat ccgaagcctc
     3781 catcaacctc tacgccggcc cacagaccac atccgttatc gcaaacatcg ccgacaacct
     3841 gcaactggcc aaagactacg gcaaagtaca ctggttcgcc tcccccctct tttggctttt
     3901 gaaccaactg cacaacatca tcggcaactg gggctgggcg attatcgttt taaccatcat
     3961 cgtcaaagcc gtactgtatc cattgaccaa cgcctcttac cgttcgatgg cgaaaatgcg
     4021 tgccgccgcg cccaaactgc aagccatcaa agagaaatac ggcgacgacc gtatggcgca
     4081 gcaacaagcc atgatgcagc tttacacaga cgagaaaatc aacccgctgg gcggctgcct
     4141 gcctatgctg ttgcaaatcc ccgtcttcat cggattgtat tgggcattgt tcgcctccgt
     4201 agaattgcgc caggcacctt ggctgggttg gattaccgac ctcagccgcg ccgaccccta
     4261 ctacatcctg cccatcatta tggcggcaac gatgttcgcc caaacctatc tgaacccgcc
     4321 gccgaccgac ccgatgcagg cgaaaatgat gaaaatcatg cctttggttt tctccgtcat
     4381 gttcttcttc ttccctgccg gtctggtatt gtactgggtg gtcaacaacc tcctgaccat
     4441 cgcccagcaa tggcacatca accgcagcat cgaaaaacaa cgcgcccaag gcgaagtcgt
     4501 ttcctaaatg ccgcagcatg aaaaatgccg tctgaaacct gttcagacgg catttttatt
     4561 gttcaccccc tatcggggcg gaaatcttca acctgcatac atcacaaaaa tcgtcgggcg
     4621 ttttttcaga ttgggcattt cttttctttt tcgccactgc acaaccgtct ggctgatgat
     4681 ttcctgagtc ggcaacgtca aatccgtagc cgtacacaaa cgcgtttcag aatgcaggtt
     4741 ttccaccgca tccgccaaca acacatcgtt gcgatacggc gtttcgataa acagctgcgt
     4801 ttcattctgc tggcgcgaac gttgctccaa agccttcaaa ctctgaatcc gctcgttttt
     4861 ttcagacggc agataaccct taaacgcaaa actctgcccg ttcgcacccg aagccatcaa
     4921 agccagcagc aggctggaag gcccgaccag cggacgcact tcaaaaccgt gtttatgcgc
     4981 caaagccacc agattcgcac ccggatcggc aacagccggg caacccgcct cgctgacaat
     5041 gcccatactg cgcccttctt gcaaaggttt cagcaattcc agcaaagtct tcaaatccgt
     5101 gtgttcgttc agcgtttgca aattcagttc gcggataggc attgtcacgc ccaaatgttt
     5161 caaatgcgcg cgcgccgttt tttccgcttc cacgacaaaa tccgtcagcc cgacaatcgc
     5221 ctgttgttca tgcggcaaca ggcacggcgt atcgggcgta cccaaaggcg taggaatcaa
     5281 atacaaaaca ggagacatca ttccctcact catcggttaa aaatgccgtc tgaacccttc
     5341 agacggcata aacgggcagt tacaaaacat ccacgccctc atttttcaaa aaatcgacca
     5401 gacggaaaac cggcaaaccg attaaagcat tcggatcggt actctcaatc ctttcaatca
     5461 acaatgcacc caaatcctca ctcttcagcg cacacgaaca ataaaccgca tcaggctcgc
     5521 gctccaaata gcggaggatg tgcaactcgt ccaactgcct catcacgacc accgtcttat
     5581 cgatatgccg ctgcatcctg cccgtaaccg tatttagcag aacgaccgcg ctgtaaaact
     5641 caatctccct gccgctcaaa tgcatcaaca tcttttgcgc attagcaagg ttcatcggct
     5701 tgccccactg cctgccgtcg caccacgcca cctggtccgc accgacaatc aacgcctttg
     5761 ggaaacgccc ggtcaacgac cgcgccttac cctcggcaag gcgcaatgcc gtctgagggg
     5821 cggattcccc caacatcggc gtttcgtcaa aatcggggga cgccgcctga aaggcaatgc
     5881 cgagcctttc catctgttcg cggcggaaaa ccgaactcgt acccaaaatc aaaggcagtt
     5941 ccaaacccat cccatcctcc ttaccgttga aaacacgccc gaaggggcgg taaaatccag
     6001 ccatgcgccg aaacacggat acccgccttc ggcgtaccgc aacatttttc ttaaaaatat
     6061 tgacgttaga acatctaaat tatatcatac cccgtttatg tcagacccta atttgattga
     6121 cccggaaatt ttcgccgccg aagggcagaa tctgcaaggc agttttctgc tggaagaatt
     6181 ggatgaacgc gtcagttcgc acgattatcc cgccgacagg cagaccaaaa tatcgtttac
     6241 actgaccggc ggtcgcgacc ggctgcaacg cctgttcctc gacctgaacg tcaaagccga
     6301 tatgcccctg atttgccaga gatgtatcaa acccatgccg ttcatgcttg atgaaagcag
     6361 ccgtatcgtc ctgttttcca acgaagagtc cttggacgaa tccatgcttg ccgacgaaga
     6421 actcgaaggc atactgattg aaaaagaact cgacgtgcgc acattggtag aagaccaaat
     6481 cctgatgtcc ctgccctttt cgccgcgaca cgaagactgc ggcgacaatg ggacactgga
     6541 agaagtcaat cgggacaaac ccaacccctt tgctgttttg gcaggtttga aaagcaattg
     6601 attaggacac agtttattta tctaggagct tgaaatggcc gttcaacaaa acaaaaaatc
     6661 cccttccaaa cgcggtatgc accgttcgca cgacgcgctg accgcgcctg cactgtctgt
     6721 cgacagcaca accggcgaag tacaccgccc gcaccacatc tcccccaacg gtatgtaccg
     6781 cggccgcaaa gtggtcaaag ccaaaggcga ataatcccta ttcgactgac tgaaaaagcc
     6841 agaacattgc catgcaatta ctggcttttt ttgcattgga cgcaccatcc gtccaaactt
     6901 tcgccatacg tcaacacaca ggggcaaagc gttccgtata ataccccgtg aaaatattcc
     6961 aaaagcccca accaccaagg aaattccgat gaaacagaaa atctggtaca cctacgatga
     7021 catccaccgc gtcatcaaag cattggcaga aaaaatccgg aacgccgaca tcaaatacga
     7081 tgccatgatt gccatcggcg gcggcggctt tattccggca cgtatgctgc gctgttttct
     7141 ggaaattccg atttatgccg taaccaccgc ctattacgac agcgacaacg aaggacaggt
     7201 tacagaagaa gtcaaaaaag tccaatggct cgaccccgtt cccgaagccc tgcggggcaa
     7261 aaacgtcctt gttgtcgatg aagtggacga cagccgcgta accatggaat tttgcctgac
     7321 agagctgctc aaagaagact tcggtacgat cggcgtcgcc gtactgcacg aaaaaatcaa
     7381 agccaaagca ggcaaaatcc ccgaaggcat tccctatttc agcggcatca ccgtagaaga
     7441 ctggtggatc aactatccgt gggacgcact cgacatcgac gaacacaacc gccttgccga
     7501 ggccggccga ggctgaccct ttcagacggc atattttccg aaccgatgcc gtctgaagcc
     7561 cgcacgaccc ctgccgcaga ccgaaaacct accggagaac cctatgatta cacttgccgt
     7621 agatgccatg ggcggcgacc aaggacttgc cgttaccgta cccggcgcaa ccgcattcct
     7681 ccaagcacac cccgatgtcc gcctgattat gaccggcgac gaaacgcaac tgcgccaagc
     7741 cctgaccgcg gcaggcgcac cgatggaacg catcgacatc tgccatacca cccaagttgt
     7801 cggcatggat gaatcccctc agtccgccct aaagaacaaa aaagactcct ccatgcgcgt
     7861 tgccatcaac caagttaaag aaggcaaagc ccaagccgcc gtatccgcag gcaacacggg
     7921 cgcactcatg gcaaccgcac gtttcgtcct caagaccata cccggtatcg aacgccccgc
     7981 catcgccaaa ttcctcccgt ccgacaccga ccatgttacc ctcgccctcg accttggcgc
     8041 gaacgtcgac tgcacgcccg aacagctcgc ccaatttgcc gttatcggca gcgaactcgt
     8101 ccacgcactc catcctcaaa aaggacagcc gcgtgtcggg ctggtcaacg tcggcacgga
     8161 agacatcaaa ggtacggaca ccgtcaaaca aacctacaaa ctgctgcaaa acagcaaact
     8221 caactttatc ggcaacatcg aaagcaacgg catcctgtac ggcgaagcag atgtcgtcgt
     8281 cgccgacggc tttgtcggca acgtcatgct caaaaccatc gaaggcgcgg tcaaattcat
     8341 gagcggagcc atccgccgcg aattccaaag caacctgttc aacaaacttg ccgccgttgc
     8401 cgccctaccc gccctcaaag ggctgaaaaa caaactcgat ccgcgcaaat tcaacggggc
     8461 catcctgctc gggctgcgcg gcatcgtcat caaaagccac ggcggcacag acgaaaccgg
     8521 tttccgctac gcactcgaag aagcctacca cgaagccaag tccgccggcc tttccaaaat
     8581 cgaacaaggc gttgccgaac aactcgccgc actcgaaact gccaaagccg tccaaaacga
     8641 aaatgtcggc ggtctgtaac acacacgatg ccgtctgaac gcccccgccc ctttcagacg
     8701 gcatccgccc gccccgaacc tgcgggcgcg gacggcgatg cacctgtccg gcacttccca
     8761 aatacttccc tgtaaaataa ggaatatttg aaaaatgaag acattagaaa aacggatgaa
     8821 agctctagac aaacggatga tgaagttcgg aaaatccctt gaaggcaggc ttgatgcccg
     8881 tctgattgaa tccgcattgg attatattca ttattcggaa cgttttttgg cttttgaaat
     8941 cctgtgtact tatatcgaag atttcgatgt ccggctgacg gaacaagaat cccgggaaat
     9001 ttcttttatc aacaaggaat ttgagataga aagcacgtcc gattaaccaa taaagccaat
     9061 gatttgataa gaatgaaaac atcgacggtc gtttttggcg gattttttat ggcagacaac
     9121 agggagcgaa tccaaatccc cgttttggaa aatcctggca ttagggaaat caatcacttt
     9181 ttttccgtat caaattttga gaaaaaagcc ggcgtccttg ttttcagaat tattcctgaa
     9241 cccaaatttg gcaataccga attaactatc tattttgaag aaggatgtta tttgccaatg
     9301 attcaaacaa ttttagaaga tggggatatt gaagtcaaaa accttaaaac agaaaattat
     9361 agtggaaata caatggaaat ttggggagac ttctacccta ttgagcatat ctctaaaaat
     9421 atttctacaa ttcaaaatat aatttctgaa tttatgatac aaaaacaaac accggcacca
     9481 ataatttgat ggaaaaccaa caatcaaaat gccgtctgaa gcatgtttgg ttttcagacg
     9541 gcatttcctt cgcttaaaac agcgtatcgg caaccccgcc ctgcctatcc acggcaatct
     9601 gcatctgaaa accatctgta tcccaaacca cacccccatc cctgtttccg tcatttgcac
     9661 cctgtccgta ttgggcaatc atcggttttt cgcttacaat agccgaatct gaaccaactc
     9721 tctaaaaagg ccgttcccat gcagtatgca aaaatttccg gcacgggcag ctatcttcct
     9781 gccaaccgcg tcagcaatga cgaccttgcc caaaaggtag atacctctga cgagtggatt
     9841 accgcgcgca cgggcatcaa gttccgccat attgcagccg aaaatgagaa aaccagcgat
     9901 cttgccgccg aagcagcccg ccgcgcgctg gatgcagccg gattagacag cggcgaaatc
     9961 gatttgatta tcgtggcgac ggcaacgccg gatatgcagt ttccttctac cgccaccatc
    10021 gtgcagcaaa aattgggcat caccaacggc tgtcccgcgt ttgacgtaca ggcggtgtgc
    10081 gccggcttta tgtacgcgct gaccacggca aacgcctaca ttaaaagtgg catggcgaaa
    10141 aacgcgctgg tcatcggcgc ggaaaccttc agccgcatcg tcgattggaa cgaccgcaca
    10201 acctgcgtat tgttcggcga cggcgcgggc gcggtggttt taagcgcgtc ggacacgccg
    10261 ggcatcatcc acagcaaact caaggccgac ggcaattatc tgaaactctt aaacgtcccc
    10321 gggcaaatcg cctgcggcaa agtttccggt tcgccgtaca tttcgatgga cggtcccggc
    10381 gtgttcaagt ttgccgtcaa aatgctgtcc aaaatcgccg atgacgttat cgaagaagcc
    10441 ggttataccg ccgctcaaat cgactggatc gtgccgcatc aggcaaaccg ccgcattatc
    10501 gaatcgaccg cgaaacattt aggtttgagt atggacaaag tcgtcctgac cgtccaagac
    10561 cacggcaaca catccgccgc atcgattccg ctggctttgg atacgggcat ccgcagcgga
    10621 caaatcaaac gcggtcaaaa cctgctgctc gaaggcatcg gcggcggttt cgcgtggggc
    10681 gcggtgctgt tgcaatattg aacccgatgc cgtctgaaac aggctttcag acggcatttc
    10741 ccatatcatg aagcggcagg ctttcttcaa actgatggcg tgtgcggcat ttctgtctgc
    10801 cgtttcgctg cgcctccccg tattgggcgc gtgttacgca atattgtccc tctatgcgtt
    10861 tgcactttac ggcatcgaca aacggcgtgc cgtgcgggga aaacgccgca ttcccgaaca
    10921 ccgcctgctg ctgcctgcct tgttcggcgg ttgggcgggc gcatacttgg gcagcaggat
    10981 attcaggcat aaaacggcga aaaagcgttt tgttgtgctg ttccgtctga ctgtttcggg
    11041 caatgtcctg gcgaccctca tcctg
//
LOCUS       DAXHNP010000059        11033 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.059, whole genome shotgun sequence.
ACCESSION   DAXHNP010000059 DAXHNP010000000
VERSION     DAXHNP010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.059"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            142..1539
                     /gene="aspA"
                     /locus_tag="ACFM5C_001116"
     CDS             142..1539
                     /gene="aspA"
                     /locus_tag="ACFM5C_001116"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFC6068827.1"
                     /translation="MTVRIEHDLLGDREIPAEVYWGIHTLRAIENFKISTQKISDVPQ
                     FVRSMVMVKKATAQANGELGAVKPEIAAAIEKACDEVLLNNRCLDQFPSDVYQGGAGT
                     SVNMNTNEVIANLALEVLGYEKGRYDIVNPMDHVNASQSTNDAYPTGFRLAVYYSIGE
                     LLDKLTVLKNAFAAKAEEFKDVLKMGRTQLQDAVPMTAGQEFQSFQVLLEEEILNLDR
                     TRQLLLEVNLGATAIGTGVNTPKGYAELVVKKLSEVSGLPCKLTENLIEATSDCGAYV
                     MVHGALKRTAVKLSKICNDLRLLSSGPRAGLKEINLPELQAGSSIMPAKVNPVIPEVV
                     NQVCFKVIGNDTTITFAAEAGQLQLNVMEPVIAQCMFETISLLGNAAVNLSDKCVKGI
                     TVNREICERYVFNSIGLVTYLNPYIGHHNGDLVGKICAQTGKGVREVVLERGLLSEEE
                     LNRILSPENLMNPHL"
     gene            complement(1611..2486)
                     /locus_tag="ACFM5C_001117"
     CDS             complement(1611..2486)
                     /locus_tag="ACFM5C_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HFC6068828.1"
                     /translation="MAYLLISIVFSVSVSILLKMARKKKIDIAQAVAVNYVVAVILTL
                     LVLKPDIGNIGAFLPTWPLFAALGVLLPSVFVIMGKSVEAAGIVKSDAAQRLSLFLPI
                     VAALTLFGEKLSEGKLIGLCLAFAALFCLLWKHSGGKKSGSAWRQAALLLGVWAGYGI
                     IDILFKQLAKSGTAFAGNLLVAFVLAGVLMFACLFAKSVRWRVESVVGGIFLGGLNFM
                     NIVTYITAHQMMKDNPTLVFAGMNIGVIVLGTLSGALFFKEKINTINTAGIVLALCSI
                     ACLFYWGEVKVLFGI"
     gene            complement(2488..3210)
                     /locus_tag="ACFM5C_001118"
     CDS             complement(2488..3210)
                     /locus_tag="ACFM5C_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFC6068829.1"
                     /translation="MDKDLYAVLGVSPQAGADEIKRAYRKLAMKYHPDRNPGNPKAEE
                     KFKEIQRAYDTLSDLSKRMQYDASFRRHEERGRQEEAFRREQARREQFYREQMRREQA
                     FRQAFERQASRSCHTYEPSGGGSGRNYVLAAYILFGLGAIMLFMPIVGVIFAYMPIVG
                     VILAYMKRNSLDSIVYAAHTEYLIKTFWRTFWLYILGALTALLGIGVLIIIATNVWYF
                     YRIIAGFIRFNGGRAVAPEKWI"
     gene            complement(3233..3712)
                     /gene="ybaK"
                     /locus_tag="ACFM5C_001119"
     CDS             complement(3233..3712)
                     /gene="ybaK"
                     /locus_tag="ACFM5C_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HFC6068830.1"
                     /translation="MSKHTYPITPAVRVLRENGIEFEPFTYAYEEHGGTAQFARLFGK
                     DEHLVIKTIVLQDENGKGLIVLMHGDKQISTRNLARHLGAKHIEPATPVQANKWTGYL
                     VGGTTPFGIRTKLDIYVEQSVMDLETIYINGGKRGFIIGIRPGDLNILNPKTIQAAV"
     gene            3787..4149
                     /locus_tag="ACFM5C_001120"
     CDS             3787..4149
                     /locus_tag="ACFM5C_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6068831.1"
                     /translation="MDIRYFGTTPRYSEAVGANGLIFLSGMVPENGETAAEQTADVLA
                     QIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARP
                     EWRVEIKITAVKKDAATA"
     gene            4184..5047
                     /locus_tag="ACFM5C_001121"
     CDS             4184..5047
                     /locus_tag="ACFM5C_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HFC6068832.1"
                     /translation="MKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYN
                     TPKGRVIANMIVVNRGGDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVGAEL
                     EASAEPLAAQEPNLAFAAQQDSDGICSIALPHGGILRIAPKNTLPPYDAAAENAWRLH
                     EIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAV
                     LSGNSAVEAGTLLTADGEEAGIVLDSVQDSENFTALAVIKFSAAQKELAAPNGGIFKA
                     VHLFFKTENAE"
     gene            5141..6100
                     /gene="ttcA"
                     /locus_tag="ACFM5C_001122"
     CDS             5141..6100
                     /gene="ttcA"
                     /locus_tag="ACFM5C_001122"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFC6068833.1"
                     /translation="MSKKTKQELENNKLSKRLRHAVGDAINDFNMIEPDDKIMVCLSG
                     GKDSYALLDILRQLQASAPIDFQLVAVNLDQKQPGFPEEVLPTYLESIGVPYKIVEED
                     TYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATLFLNMFY
                     GGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPIIPCNLCGSQPNLQRQ
                     VIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLERGQTLKHGGDLAFD
                     SEKMPERFSDGSEEDESEIKIEPQKAERKVINILANKPKTCGA"
     gene            complement(6194..9133)
                     /locus_tag="ACFM5C_001123"
     CDS             complement(6194..9133)
                     /locus_tag="ACFM5C_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction-modification system
                     endonuclease"
                     /protein_id="HFC6068834.1"
                     /translation="MSGFNYEKNQPHQMRAVSAVLGVFDGATPKYRAADENPELLFAA
                     KQYADNILKVQSQNGIDGRFPDRSDDQNILDISMETGTGKTYTYTQTMFELHRWLGVF
                     KFIVVVPTLSIKAGTRQFLQSKALAEHFEQDFGGDYEGVRLKTYVVESAKKNKGKKSN
                     APITIEQFAKAENKKEIHVLLINAGMVNSSSMNDTGDKALKDLFDNPVDALAAVRPFV
                     IVDEPHKFPTRESAKTWGNIKRLKPQYILRYGATFNDEYYNLLYRLTAVDAFNDGLVK
                     GVRVFQEEMQGGMDAAVKLVSSGGKEAKFELNEKDKKQTFKLAKGEDLAKIHPAVSDL
                     KIDKMNKTVVVLSNGLELKTGAVINPYSYSQTVQDAMMQRAVAEHFKLERALLAERAP
                     QPKIKPLTLFFIDDIAGYRSGNELSGSLKDKFESWIHAEAARRLKTESDPFYRDYLQK
                     TLDDVSACHGGYFSKDNTDSDDRIEQEINEILHDKEKLLSLDNPRRFIFSKWTLREGW
                     DNPNVFQICKLRSSGSTTSKLQEVGRGLRLPVNELMARVRDVPYKLNYFVDSSEKDFV
                     KQLVGEINDNSFQEEISKKFTEELKQKILQKYPDIKPLGLLNKLFSDGIIDDNENFTE
                     DGYDKLKAAYPEAFPKGLDKGKVSNAKDEGKDTIIMREGKYEELKALWELIHHKAVLQ
                     YKIKDEAEFVDLFTAYLRENAAKFPQAGIRTAVNEAYINNGLMLSRRIDSFEDEDFIR
                     FNTMTYRELLEKLAQTAKIRMQTLHQAFYRVRNELNIGDFLNMQTIAQIKNGFNRFLL
                     HHSFHKFELDYQLVGSKIHPTKFTDKDGKPRAVKKADLGRFEDTEHRPAAGYLFDEIF
                     YDSDIEHENVANNQIEGVTVFTKIPRNSIKIPVAGGGTYSPDFAYIVKTQSGEILNFV
                     IEAKGTDGAEDLRKSEERKIKHAEKLFAEISKEIKVVFKTQFDGERIAELIGQNMPAG
                     GHSENGH"
     gene            complement(9146..>11033)
                     /locus_tag="ACFM5C_001124"
     CDS             complement(9146..>11033)
                     /locus_tag="ACFM5C_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6068835.1"
                     /translation="PDLIDTAGVNTEAIYTSDGITANSTQLEQLKKLFPACFDADGNF
                     LIDRLQAEIAPQTDIGREFYEMNWLGKSYARLLRNLPPETLISEDKTHNAKPENAGSQ
                     NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANI
                     DEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLL
                     CDEVFGEGNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHFDNLKRPKDIRGKK
                     IVINDELYWIQEDAVREQFGKYGNLHYEDIIEIKGIEFKNKIDKDIENNEYILIPKSY
                     GKTIIGKLRKVSDDFSKFHSILNIGNISKNLTKDGIRELEELFETGKGYSPFETPKPL
                     DLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRYICVQLPEKTA
                     EKSEARKAGYPTIFDITKARIEKAAAKIRVEHPDYTGDSGFKIFQTADNFRQHPDKDF
                     SPEQPDLPLNDELSEEQLQTLLTTWTLYDGAALTTPVEPVRLGAYTAYLCEKRLYLMN
                     AGFTSADLLAFIRKLDDDADFNPNRVIVFGSNMASAMQHELDQAVRGYANKKEIELNV
                     IIRV"
BASE COUNT         2656 a         2946 c         2600 g         2831 t
ORIGIN      
        1 cccgaaaaca acgtttcccg ttttcagacg gcatacgata tggacaattt catccggccg
       61 gtatagtgtt catcctgcgg cggcatcttt ccgatggcgc attttttcaa tattaattat
      121 ccgacttaca aaggtaaaaa catgactgtc cgtatcgaac acgatttatt gggcgaccgc
      181 gagattcccg ccgaagtgta ttggggcatc cacaccctgc gcgccattga aaactttaaa
      241 atctccacac aaaaaatttc tgacgtgccg cagtttgtcc gcagtatggt gatggtgaaa
      301 aaggcgacgg cacaggcaaa cggtgagttg ggcgcggtca agcccgaaat cgccgccgcc
      361 attgaaaaag cctgcgacga agttctgctg aacaaccgct gcctcgacca attcccgtcc
      421 gacgtgtatc agggcggtgc gggtacttcg gtcaatatga acaccaacga agtcatcgcc
      481 aacctcgcat tggaagtctt gggatacgaa aaaggccgct acgacatcgt caatccgatg
      541 gatcacgtca atgccagcca atcgaccaac gatgcctatc ccacgggctt ccgccttgcc
      601 gtgtattaca gcatcggcga attgctcgac aaactgactg tcctgaaaaa cgcctttgcc
      661 gccaaagccg aagaatttaa agacgttttg aaaatgggcc gcacccagct tcaagatgcc
      721 gtgccgatga ctgccggcca agaattccaa tctttccaag tgttgttgga agaagaaatc
      781 ctcaacctcg accgcacccg ccaactgctg ttggaagtca atttgggcgc aacggcaatc
      841 ggcacgggcg tgaacacgcc caaaggctac gccgaactgg tggtcaaaaa actctccgaa
      901 gtcagcggct tgccttgcaa actgaccgaa aacctgattg aggcgacctc cgactgcggc
      961 gcatatgtga tggtacacgg cgcattgaag cgcacggcgg tcaaactctc caaaatctgc
     1021 aacgacttgc gcctgctctc ttccggcccg cgtgccggct tgaaagaaat caacctgccc
     1081 gaattgcagg ccggttcttc cataatgccc gccaaagtca atcccgtgat tcccgaagtg
     1141 gtcaaccaag tctgcttcaa agtcatcggc aacgacacga cgattacctt cgccgccgaa
     1201 gccgggcaac tgcaattaaa cgtgatggag ccggtcatcg cccaatgtat gtttgaaacc
     1261 atttccctct tgggcaatgc cgcagtcaac ctgtccgaca aatgcgtcaa aggcattacg
     1321 gtcaaccgcg aaatctgcga acgttacgtt ttcaactcca tcggtttggt gacttatctg
     1381 aatccgtata tcggacacca caacggcgat ttggtcggca aaatctgcgc ccaaaccggc
     1441 aaaggcgtgc gcgaggttgt cttggaacgc gggctgttga gcgaagaaga actcaaccgc
     1501 atcctctctc ccgagaacct gatgaacccc catctgtaac gttgcagaca aatgccgtct
     1561 gaagcaggga tgctgcttca gacggcattt tgttatatca atcagccgga ttatatgccg
     1621 aacagtacct tgacttcccc ccaataaaac aggcaggcga tagaacacag tgccaacacg
     1681 attcccgccg tattgattgt gttgattttt tccttaaaga acaatgcgcc cgaaagcgta
     1741 cccaaaacaa tcacgccgat attcataccg gcaaaaacca aggtcggatt atccttcatc
     1801 atttggtgcg cggtgatgta ggttacgata ttcataaaat tcaaaccgcc caagaatatg
     1861 ccgccgacca cactctcaac acgccatctg accgatttgg caaacaggca ggcaaacatc
     1921 agcacacccg ccagcacaaa tgcaaccagc aggttgcccg caaatgccgt tccgcttttg
     1981 gcaagctgtt tgaacaggat atcgataatg ccgtaacctg cccacacgcc cagcagcaat
     2041 gccgcctgcc gccacgcgct tcctgatttt ttgccaccgc tgtgtttcca aagcaggcag
     2101 aacagtgcgg caaatgcgag gcacagcccg attagtttgc cttcgctgag tttttcgcca
     2161 aacagcgtca aggcggcaac aatcggcaaa aacagcgaca aacgctgcgc cgcgtcggat
     2221 ttgacgatac cggcggcttc cacagatttg cccattatca cgaatacgga cggcagcagc
     2281 acgcccaaag cggcaaacag cggccacgtc ggcaaaaatg cgccgatatt gccgatatcc
     2341 ggcttcaata ccagcagggt cagtatgacc gcgaccacat aattgacggc gaccgcctgc
     2401 gcgatgtcga tttttttctt ccttgccatt ttcagcaaaa tggaaaccga cacgctgaac
     2461 acgatgctga ttaacaggta agccatacta tatccatttc tcgggtgcaa ccgccctgcc
     2521 gccgttgaag cggataaagc cggcgatgat gcggtagaaa taccagacgt tcgttgcaat
     2581 aataatcagc acgccgatac ccaaaagggc agtcagcgca cccaaaatat aaagccaaaa
     2641 tgtgcgccaa aaggttttaa tcaggtattc ggtatgtgcg gcatagacaa tgctgtccaa
     2701 actgttccgt ttcatatagg cgagaatcac gccgactatg ggcatatagg cgaaaatcac
     2761 gccgactatg ggcatgaaca gcatgattgc acccaaaccg aacaggatgt aggcggcgag
     2821 gacatagttg cgcccgcttc cgccgccgga cggttcgtaa gtatggcacg aacgtgatgc
     2881 ctgccgttca aacgcctgtc tgaacgcctg ttcgcggcgc atctgttcgc ggtaaaactg
     2941 ctccctgcgc gcctgttcgc ggcggaatgc ctcttcctgc cgcccgcgtt cctcatgccg
     3001 tctgaaggac gcgtcgtatt gcatccgttt cgacaggtcg gaaagcgtat cgtaagcccg
     3061 ttggatttct ttgaactttt cttccgcctt cggattgccc ggattgcggt cgggatgata
     3121 tttcatcgcc agcttgcggt aggcgcgttt gatttcgtcc gctcccgcct gcggcgacac
     3181 gcccaatacg gcatacaaat ctttgtccat attgttcctt tatactttcc cgtcaaaccg
     3241 ccgcctgtat tgttttcggg ttcaaaatat ttaaatctcc gggacggatg ccgataatga
     3301 acccgcgttt tccgccgttg atatagatgg tttccaaatc catcaccgac tgttcgacgt
     3361 aaatatccaa ctttgtccgg atgccgaacg gcgttgtgcc gccgaccaga tagcccgtcc
     3421 acttgtttgc ctgtacgggc gtggcgggtt cgatgtgttt cgcacccaaa tgccgcgcca
     3481 gattgcgggt tgaaatctgc ttgtcgccgt gcatcaagac aatcagcccc ttaccgtttt
     3541 catcttgcaa aacaatggtt ttaatgacca agtgttcgtc tttgccgaat agtcgggcaa
     3601 actgcgccgt gccgccgtgt tcctcatagg cataggtaaa aggttcaaat tcgatgccgt
     3661 tttcacgcaa aacgcgcacg gcaggtgtta tcggataagt gtgtttactc atttttcgtc
     3721 atgcaaaaca tggaaatcgg tcaagcgcaa tgttaccata tatccccttt atcgaaggaa
     3781 accgatatgg atatccgata tttcggcaca acgccccgct attccgaagc cgtcggcgca
     3841 aacggcttga ttttcctctc cggcatggtt cccgaaaacg gtgaaacggc tgccgaacag
     3901 actgccgacg tgcttgccca aatcgaccgc tggctggcgg aatgcggctc ggacaaagcg
     3961 cacgttttgg atgcggtcat ctatctgcgc gatatgggcg actatgcgga aatgaacggc
     4021 gtgtgggacg cttgggttgc cgccggcaga acgcccgccc gcgcctgcgt ggaagcgcgg
     4081 ctcgcccgtc cggagtggcg cgtcgaaatc aaaataaccg ccgtgaagaa agatgcggca
     4141 accgcataaa cagatttcct ttatatttca gagtacgcaa atgatgaaaa ccttactgcc
     4201 ctttttcggc gtggtacgcg tcagcggcga agaccgccaa accttcctgc acggacagct
     4261 ttccaacgac atcaataatc ttcagaccgg gcaggcgtgt tatgcgactt acaacacgcc
     4321 caaaggccgt gtcatcgcca atatgattgt cgtcaaccga ggcggcgatt tgctgctgat
     4381 tatggcgcaa gacttgcttg aagcaacggt caaacgtttg cggatgtttg tgttgcgtgc
     4441 caaagccgtt tttgaaatcc ttgaagatta cgccgtcggc gcggaattgg aagcatccgc
     4501 cgaaccgctt gccgcgcaag aacccaacct tgcctttgcc gcacaacaag attcagacgg
     4561 catctgctct atcgctctgc ctcatggcgg catccttcgc atcgccccca aaaacacctt
     4621 gccgccttat gatgccgccg ccgaaaacgc gtggcggctg cacgaaatcc gtagcggtta
     4681 tccgtggata tgcgcggcta ccaaagaaac tgccgttgcc caaatgctca accagcacat
     4741 catcggcggc gtacacttca aaaaaggctg ctatcccggt caggaaatca ttgcccgtgc
     4801 ccagtatcgg gggcaggtca aacgcggctt ggcggtattg tcgggaaatt cggccgtcga
     4861 agcaggaacc ctgctgacgg cggacggcga agaggccggc atcgtactcg acagcgttca
     4921 agattcggaa aactttaccg cccttgccgt gattaaattc tccgccgcac aaaaagaact
     4981 cgccgcccca aacggcggta tcttcaaagc ggttcatctc ttctttaaaa ccgaaaatgc
     5041 agaataatcc ctctgatgcc gtctgaagcc cttcagacgg cattgccgcc ccgtcaatcg
     5101 gttacaatgc cgcctttcta attttcaaac ccaaaccgcc atgtccaaaa aaaccaaaca
     5161 agaactcgaa aacaacaaac tcagcaaacg cctgcgccac gccgtcggcg acgcgattaa
     5221 cgatttcaat atgatcgagc cggacgacaa aatcatggtc tgcctctccg gcggcaaaga
     5281 cagctatgcc ctgttagaca tcctgcgcca gctccaagcc agcgcgccga ttgatttcca
     5341 actggttgcc gtcaatctcg accaaaagca gccgggcttc cccgaagaag tattgccgac
     5401 ctatctcgaa agcataggcg tgccgtacaa aatcgttgaa gaagacacct actccaccgt
     5461 caaacgcgta ttggacgaag gcaaaacgac ttgttcgctg tgcagccgcc tgcgccgcgg
     5521 catcctctac cgcactgcaa aagaattggg ctgcaccaaa atcgccttgg gacaccaccg
     5581 cgacgacatc ctcgccacct tgtttttaaa tatgttttac ggcggcaaac tcaaagccat
     5641 gccgcccaag ctggtgagcg acaacggcga acacatcgtc atccgtccgc tggcgtatgt
     5701 aaaagaaaaa gacttaatca aatacgccga attaaaacaa ttccccatca tcccgtgcaa
     5761 cctctgcggc tcgcaaccca acctgcaacg ccaagtcatc ggcgatatgc tgcgcgattg
     5821 ggacaaacgc ttccccggcc gcatcgaatc gatgttctcc gccctgcaaa acgtcgtccc
     5881 ttcccacctt gccgataccg aactcttcga ctttgtcgga ttggaacgcg gtcaaaccct
     5941 gaaacacggc ggcgatttgg cgtttgacag cgaaaaaatg cccgaacgtt tttcagacgg
     6001 cagcgaagaa gacgaaagcg aaatcaaaat cgagccgcaa aaagccgaac gcaaagtcat
     6061 caacattctg gcgaacaagc cgaaaacctg cggcgcgtaa acctccaccg tcaaaaatgc
     6121 cgtctgaagc ccgtttggcg tttcagacgg cattttaaaa tcccgaagca gacggcttcc
     6181 aaacatttgt ttctcagtgt ccgttttcag aatgcccgcc tgcgggcata ttttgcccga
     6241 tcagttcggc tatcctctcg ccgtcaaact gcgttttgaa caccaccttg atttctttgg
     6301 aaatctcggc aaacagcttt tcggcatgtt tgattttccg ctcttcgctt tttcgcaaat
     6361 cttccgcccc gtcagtccct ttggcttcaa tcacaaagtt cagaatctcg ccgctttggg
     6421 ttttcacgat ataggcaaaa tcgggcgaat acgtgccgcc gccggcaacg gggattttga
     6481 tggagtttct cggtatttta gtgaatacgg ttacgccttc aatttggttg ttggcgacat
     6541 tttcatgttc tatatccgaa tcgtagaaaa tctcgtcgaa gagatagccg gcggcaggcc
     6601 ggtgctccgt atcttcaaat cttcccaaat ctgctttttt caccgcgcgc ggtttgccgt
     6661 ctttatcggt aaatttggtc ggatggattt tgctgccgac aagctggtaa tccagttcga
     6721 atttatggaa ggaatgatga agcaaaaacc ggttgaagcc gtttttgatt tgggcgatgg
     6781 tctgcatatt caaaaaatcg ccaatgttca gttcgttgcg gacgcggtaa aacgcctgat
     6841 gcaaagtctg catgcggatt tttgccgttt gtgccagttt ttccagaagc tcacggtaag
     6901 tcattgtgtt gaaacggata aaatcttcat cttcaaagct gtctatgcgg cgggaaagca
     6961 taagcccgtt gttgatataa gcttcgttta ccgccgtgcg tatgcctgcc tgcgggaatt
     7021 tggcggcgtt ttcacgcaaa taggcagtaa ataaatcgac aaattcggct tcatctttga
     7081 ttttgtactg caaaacggct ttatggtgaa tcagctccca caaggctttg agttcttcat
     7141 atttgccttc gcgcatgatg atggtgtctt tgccttcgtc tttggcgttg ctgactttgc
     7201 ctttgtccaa acctttgggg aaggcttcgg gataggcggc ttttaatttg tcatagccgt
     7261 cttcggtaaa gttttcattg tcgtcaatga tgccgtctga aaacagtttg tttaacaatc
     7321 ccagaggttt gatatcgggg tatttttgca atattttttg tttcagctct tcggtaaact
     7381 tttttgagat ttcttcctga aaagaattat cgttgatttc gccgacaagc tgcttcacaa
     7441 agtctttttc gctgctatcg acaaaataat tcagtttgta cggcacatcg cgcacccgcg
     7501 ccatcagctc gtttaccggc aggcgcaggc cgcgtccgac ttcttgcagc ttggaagtcg
     7561 tgctgccgct ggaacgcagt ttgcaaatct ggaaaacgtt gggattgtcc cagccttcgc
     7621 gcagcgtcca tttggaaaaa ataaagcggc gcgggttgtc caaagacaac agtttttcct
     7681 tatcgtgcag gatttcattg atttcctgct cgattctatc gtcgctgtct gtattgtctt
     7741 tggaaaaata accgccgtgg caggcggata catcgtccaa cgtcttttgc aggtaatcgc
     7801 ggtaaaacgg gtcgctttcc gttttcaggc ggcgtgccgc ttccgcgtga atccagcttt
     7861 caaatttatc tttcaggctg cctgaaagct cgttgccgct gcggtagccc gcaatatcat
     7921 caataaaaaa cagcgtcagc ggcttgattt tgggctgtgg cgcgcgttct gccaaaagtg
     7981 cgcgttccag cttgaaatgt tcggcaaccg ccctctgcat catcgcatcc tgcaccgttt
     8041 gcgaatagga ataagggttg atgacggcgc ccgttttcaa ctccaagccg ttgcttaaca
     8101 ccaccacggt tttattcatt ttgtcgattt tcaaatctga aacagcagga tggattttcg
     8161 ccaaatcttc gccttttgcc agtttgaacg tctgcttttt gtccttttcg tttaattcaa
     8221 atttcgcttc tttgccgccc gacgacacca gttttaccgc cgcatccatg ccgccctgca
     8281 tttcttcctg aaacacgcgc acgcctttga ccagcccgtc gttaaacgcg tctactgccg
     8341 tcaaacggta aagcaagttg taatattcat cgttaaatgt cgcaccgtag cgcaaaatat
     8401 attgcggttt taagcgtttg atattgcccc atgttttcgc gctctcccgg gtcgggaatt
     8461 tatgcggttc gtccacaatc acaaacgggc gcacggcggc caatgcatca acgggattgt
     8521 caaacaaatc tttcaatgcc ttgtcgcccg tatcgttcat ggacgacgaa ttaaccatgc
     8581 ccgcgttaat cagcagcaca tggatttcct ttttgttttc cgctttggca aattgctcaa
     8641 tcgttatggg cgcattggac tttttgccct tattcttttt cgcgctttcc accacatagg
     8701 ttttcaggcg cacgccttca taatcgccgc cgaaatcctg ttcaaaatgc tctgccaaag
     8761 ccttgctttg caaaaactgc cgcgttcccg ccttaatgga caaagtcggc acgaccacga
     8821 taaatttgaa cacgcccagc caacggtgca gctcgaacat ggtttgtgtg taggtatagg
     8881 ttttgcccgt gcccgtttcc atggaaatat caaggatatt ttggtcgtcc gaacggtcgg
     8941 ggaatcggcc gtctatgccg ttttggcttt gcactttcag gatattgtct gcgtattgtt
     9001 ttgcagcaaa caaaagttcg ggattttcgt ctgccgcccg atatttgggc gttgccccgt
     9061 caaacacgcc caaaaccgcc gaaaccgccc gcatttggtg cggctggttt ttctcgtaat
     9121 taaaaccact cataaacttt ctccgtcaaa ccctgataat cacgtttaac tcaatttctt
     9181 ttttattggc ataaccgcga accgcctggt caagttcgtg ctgcatggcg cttgccatat
     9241 tgctgccgaa tacaatcacg cggttgggat tgaaatccgc atcgtcgtcc agcttgcgga
     9301 taaacgccaa caaatcggcg gaagtaaaac cggcattcat cagatacagc cgtttttcgc
     9361 acagatacgc cgtgtaagcc cctaaccgca caggctcaac cggcgtggtc agtgccgccc
     9421 cgtcatacag cgtccaggtg gtcagaagcg tttgcagctg ttcttcgctt aattcatcgt
     9481 taagcggcaa atccggttgt tcgggcgaaa aatccttgtc cggatgctgc ctgaaattgt
     9541 ctgccgtttg aaagattttg aagcccgaat cgcccgtgta atcgggatgt tcgacgcgga
     9601 ttttggcggc ggctttttct atgcgggctt tggtgatgtc gaagatggtc gggtagcctg
     9661 ctttacgggc ttcggatttt tcagcggttt tttcgggaag ctgtacacag atatagcggc
     9721 ggttaccgtt ttgtccttcg gcgttaagct gcatcacggc gtgggcggtt gtgccgctgc
     9781 ctgcgaagaa gtctaggatt aggtcagttt gatttccctt gaaagttgca gaaagaacta
     9841 atcttttcaa taaatctaat ggttttggtg tttcaaaagg agaataacct tttccagttt
     9901 caaacaactc ttctaattca cgaataccat ctttagtaag atttttactt atatttccaa
     9961 tatttaagat gctatgaaat ttggaaaaat catcggatac ttttctaagt tttccaataa
    10021 ttgttttccc ataagacttc ggaattaaga tatattcatt attttcaata tctttatcaa
    10081 ttttgttttt aaactcaatt ccttttattt caataatatc ttcgtaatgc aagttcccat
    10141 atttgccaaa ctgttcgcga acggcatctt cctgtatcca atataattca tcattgatta
    10201 caattttttt gccgcgtata tcttttggtc tttttagatt gtcaaaatga gtaatatctt
    10261 tcgcataaac taaaacagtt tcatgcccat ttacaacata ttttgcatta ccaccacctt
    10321 ctgatgtatt aacaattaaa tctttaataa aattcccttc cccaaacact tcatcacaca
    10381 acaacttcaa ctgcgccgct tcgttatcgt caatcgagat aaaaatcacg ccgtcgtcct
    10441 ttaacagttc gcgggcgata tacaggcgcg gatacataaa ggtcaaccat gcactgtgcg
    10501 agtttgagcc tttgtcggtg aaatctaaaa tccgcgcggc ttcgtcttcg tcaatattgg
    10561 ctaagcaggc aagttcggct ggtgtgaatt tgcggtcgtc ctgatagaca aagccgtctg
    10621 atccggtgtt gtagggcggg tcgatgtaaa tcatcttcac gctgtttgtg taggcgtttt
    10681 ttaagtgttt caacacttct agattgtcgc cacgaatcag taggttttgg ctgcctgcat
    10741 tttcgggttt ggcgttgtgc gtcttgtctt cacttatcag ggtttcgggc ggcaggttgc
    10801 gaagcaggcg agcatatgat ttgcccagcc agttcatttc gtaaaattcg cgtccgatgt
    10861 cggtctgtgg cgcaatttcg gcttgtaatc tgtcgataag gaaatttccg tctgcgtcaa
    10921 aacaggcggg aaacagtttt ttgagctgtt cgagttgggt agagttggcg gtaatgccgt
    10981 ctgaagtgta gattgcctcg gtgttcaccc cggctgtgtc gattagatca ggg
//
LOCUS       DAXHNP010000060        10915 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.060, whole genome shotgun sequence.
ACCESSION   DAXHNP010000060 DAXHNP010000000
VERSION     DAXHNP010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10915
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.060"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(679..1758)
                     /gene="apbC"
                     /locus_tag="ACFM5C_001125"
     CDS             complement(679..1758)
                     /gene="apbC"
                     /locus_tag="ACFM5C_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HFC6068836.1"
                     /translation="MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHF
                     GFPVAHIAAAVADSVQEILMPETGGAHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVA
                     SGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIP
                     VESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGD
                     IQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICSNCG
                     HSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIARIYTDA
                     AFQIALGIADKGKDFSSRFPKIVVE"
     gene            1969..2044
                     /locus_tag="ACFM5C_001126"
     tRNA            1969..2044
                     /locus_tag="ACFM5C_001126"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2002..2004,aa:Lys,seq:ttt)
     gene            2123..2632
                     /locus_tag="ACFM5C_001127"
     CDS             2123..2632
                     /locus_tag="ACFM5C_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HFC6068837.1"
                     /translation="MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPEEPAGAAGRPLT
                     LLSGQRLTLGQFSRDKAVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSAS
                     EVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRA
                     RIFQADVFG"
     gene            2976..3416
                     /gene="nadR"
                     /locus_tag="ACFM5C_001128"
     CDS             2976..3416
                     /gene="nadR"
                     /locus_tag="ACFM5C_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family adhesin repressor NadR"
                     /protein_id="HFC6068838.1"
                     /translation="MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRL
                     LAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
                     LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS"
     gene            3531..4031
                     /gene="hpaC"
                     /locus_tag="ACFM5C_001129"
     CDS             3531..4031
                     /gene="hpaC"
                     /locus_tag="ACFM5C_001129"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042537 - benzene-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HFC6068839.1"
                     /translation="MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAP
                     VTDEPPTVMLCINRSARIIPILSENGSLCINMLADEHQDVAEHFAGLTGLSPEERFAY
                     HIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRR
                     QFRFLD"
     gene            4047..4742
                     /gene="murU"
                     /locus_tag="ACFM5C_001130"
     CDS             4047..4742
                     /gene="murU"
                     /locus_tag="ACFM5C_001130"
                     /EC_number="2.7.7.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate alpha-1-phosphate
                     uridylyltransferase MurU"
                     /protein_id="HFC6068840.1"
                     /translation="MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQA
                     GFTEIVINHAWLGRQIEEALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGDAPF
                     LVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLADNPPHNPDGDFSLLPDGSVRPEVN
                     GGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVC
                     RLKEAQALAGAWK"
     gene            complement(4988..5419)
                     /locus_tag="ACFM5C_001131"
     CDS             complement(4988..5419)
                     /locus_tag="ACFM5C_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6068841.1"
                     /translation="MGSNAWLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVI
                     LAALLLFLTYTGKWQGVNGFTGHNWTFLILSGLATGASWLAYFKALQLGNASQVAPVD
                     KFSLVLVALMAVVFLNERPSTQEWIGLGLVTAGVLVLALKR"
     gene            5594..7270
                     /locus_tag="ACFM5C_001132"
     CDS             5594..7270
                     /locus_tag="ACFM5C_001132"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HFC6068842.1"
                     /translation="MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINP
                     AEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPV
                     FGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELNIDPK
                     RVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKE
                     RLGNILVAYAKDGSPVYAKDLKAHGAMAALLKDAIKPNLVQTIEGTPAFVHGGPFANI
                     AHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLADLKPDAAVVVATVRA
                     LKYNGGVERANLGEENLDALAKGLPNLLKHISNLKNVFGLPIVVALNRFVSDSDAELA
                     MIEKACAEHGVEVSLTEVWGKGGAGGADLAHKVVNAIENQPNNFNFAYDVELGIKDKI
                     RAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGF
                     RIAVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDEHGVIHGLF"
     gene            7384..8475
                     /gene="ychF"
                     /locus_tag="ACFM5C_001133"
     CDS             7384..8475
                     /gene="ychF"
                     /locus_tag="ACFM5C_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFC6068843.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV
                     EVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVN
                     VVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQK
                     LVDLCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPH
                     LERLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDL
                     LGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEA
                     KAKEAGKMRVEGKEYVVQDGDVMHFLFNV"
     gene            8513..8842
                     /locus_tag="ACFM5C_001134"
     CDS             8513..8842
                     /locus_tag="ACFM5C_001134"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068844.1"
                     /translation="MPSEAGFGGFRRFHTAGMRLHQNKIPSAFPICPPRFLQNKPPAP
                     LLQKAVRHSEYPEPRYKMTFQTAFAPPRFEYSGLTLNQDKATKPQTVQIVRQGEATPY
                     WFKFNPL"
     gene            8850..10197
                     /locus_tag="ACFM5C_001135"
                     /pseudo
     CDS             8850..10197
                     /locus_tag="ACFM5C_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
     gene            10262..>10915
                     /locus_tag="ACFM5C_001136"
     CDS             10262..>10915
                     /locus_tag="ACFM5C_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HFC6068845.1"
                     /translation="MSTFFQQTAQAMIAKHINRFPLLKLDQVIDWQPIEQYLNRQRTR
                     YLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYS
                     TLCRYRNWLAQDDTLSELLKLINCQLTEKGLKVEKASAAVVDATIIQTAGSKQRQAIE
                     VDEEGQISGQTTPSKDSDARWIKKNGLYKLGYKQHTRTDAEGYIEKLHITPANAHECK
                     "
BASE COUNT         2457 a         2892 c         3025 g         2541 t
ORIGIN      
        1 agcctttcgg cttgttgccc tctctctagc tctctcccac agggagagag gacgggtcgg
       61 ctgttggggt tgaggtttgc tgcaaggaaa acaggttgtg caggctgctt tttatttttc
      121 agacgacctg aaacaacagc tgcaaatcta agttgccttt caaatcgcct gcaaccgaaa
      181 aatctgccga aacccactcc ctcccccgtg ggggagggcc ggggaggcgg cattttccaa
      241 gttgcggcaa cctttcccaa caactcaacc gccccaatac aagcctttcg gcttgttgcc
      301 ctctctccag ccctctccca cggggagaga ggacggggag gctgttgggg ttaagggttt
      361 tgtaaactaa tcaggttgtg caggctgctt tttgcttttc agacgacctg catcaacggt
      421 tgtaaatcca atctgttttt caaaccgcct gcaaccgcaa aacctgccgc aatccgctcc
      481 ctcccctgtg ggggagggcc ggggagaggg cattctccaa gttgcggcaa tctttcccaa
      541 cagcttaacc gccccaatac aagccttgcg gcttgttgcc ctctctccag ccctctccca
      601 cggggagaga ggactatgaa gcccgccggc aggcgcgggg cttgggacgg cattgctgtt
      661 gcggtttcgg acgcggcttt attcgacgac gattttaggg aaccggctgc tgaagtcttt
      721 gcctttgtcg gcaatgccca gggcgatttg gaatgcggca tcggtgtaga ttcgggcgat
      781 ggcggggtgt tcgtcgaaca gttgcgccgg tgtgccgccg tccatggctt cgcgcacggg
      841 caggcttaag ggaagctgtc cgagcagggg gacgttgagg cgtgccgcca aatctttgcc
      901 gccgtccgtg ccgaacagtg cttcgctgtg tccgcagttg gagcagatgt ggacggacat
      961 attttccaat acacctaaaa tgggaatgtt gacttttcgg aacatatcca cggctttgcg
     1021 cgcgtctatc agggcgatgt cctgcggcgt ggttacgatg accgatccgg ttacggggat
     1081 gcgttgggac agcgtgagtt ggatgtcgcc cgtgccgggg ggcaggtcga taaacaggta
     1141 gtccacttcg tcccactcgc tttgaaacat cagttgctgc aaggcttggc tgaccatcgg
     1201 cccgcgccag acgacggctt ggtcggtatc gacgagaaag ccgatagaca tgacctgtat
     1261 gccgtctgaa gattcgacgg gaatgagttt ttggtttttc tgatcgggtt tgcggtcgtc
     1321 cacacccaac atggtcggtt ggctcgggcc gtaaaggtcg gcatcgagca cgccgacgcg
     1381 cgcgcccatc cgcgccattg cggcggcaag gttggcggtg gttgttgatt tgcccacgcc
     1441 gcctttgccg gaggcgacgg caatgatgtt tttcacacct ttgatggtgg taacgccagg
     1501 ttggacttta tgtgtgccga tttcggtgtc tatggacaga tggatgtgcg cgccgcctgt
     1561 ttcgggcatc aggatttctt gtacggaatc ggcgacggcg gcggcgatgt gcgcgacagg
     1621 gaagccgaaa tgcagggcga tatggatgcc gtctgaacgc tgttcgaccg aacggacggc
     1681 cttttcgccg ccgagcgtgc gtgccgtatt cggaacggcg acggtgtcga ggagggtgcg
     1741 gatgttttgt atgttcataa tgtgtgtttc tgtgtgcagt ttgggaaacg ggcggaaagt
     1801 gtacattgat ttcgggcggt ttgcctttcc ttgtgcgaac ttttacacgg tatgcggcgg
     1861 attgtgaaaa tccgttgtca aaatatcccg tgcaaacagt ggtctgcaat taagcctgta
     1921 aaatttgctt gacgaggcag gatggtgctg tataatgcac ggcttatcgg gtcgttagct
     1981 cagtcggtag agcagcggac ttttaatccg ttggtcgagc gttcgaatcg ctcacgaccc
     2041 accagataac cggaagccaa gttttgagac ttggcttttt gtttgcctgc cggttgcgcg
     2101 ggcgtaccgt ttgagagagc gtatgaaaaa gaaactgctt tcgggcatca aatttgccgt
     2161 tcagacggca ttggtgtttt tattggtgtc gctgtttttg gattgggtac gcaagcccga
     2221 agagccggcc ggtgcggcag ggcggccttt gaccctgctg tcggggcagc ggctgacttt
     2281 gggacagttt agccgggata aggcggtttt ggtgtatttt tgggggagct ggtgcggcgt
     2341 gtgccgttat cagtcgccga taatcgatga tttggcggcg gacggcgtgc cggtcgtcgg
     2401 cgtggcggta cgttccggca gcgcgtccga agtggcggcg tatatggcaa agcggggctt
     2461 gggctttccg actgtcaacg atgaggacgg gggtttggca aggtcttggc ggattgtcgc
     2521 aacgccagcc gtcgttttgg tcaaaaatgg gaaaatggtt cactatacga cgggaatcag
     2581 cagttattgg ggcttgcgcg cacgaatttt tcaggcggat gttttcggtt aacttttgtt
     2641 tttgttaaac tttacgctat gtagagaatc aaacggcata taccttgctc gtctgatgcg
     2701 gcggcttttg ttttttctgg aagaaagttc tttcgacagt aaatgtaata ctttgttgag
     2761 attgtaggga aaatagacta agatataact attaaaatat ttttagatag gattatcgga
     2821 attaaagtct tttataccca gtcgtccgat gcggtttata gcgtattgtt gctatatgtt
     2881 cgttttgtta tataacggtt gcatcaaaat ttacgcccac aggttttccc gacggtttga
     2941 aagtttgatt ttcgataact tggagactta aaacaatgcc tacccaatca aaacatgcgt
     3001 ctatcaatat cagtctgata caggcaaggg aagccctgat gacccaattc aggcctattc
     3061 tgaatcaggc gaatattacc gatcagcaat ggcggattat ccgtcttttg gcggaaaacg
     3121 gcacgctgga ctttcaagat ttggcgaatc aggcgtgtat tctgcgcccc agcctgaccg
     3181 gtatcctgac ccgccttgaa aaagcgggtt tggttgtccg cctgaaacct tccaacgacc
     3241 aacgccgcgt ttttctgaag ctgactgccg agggcgagaa gctgtatgag gaaatcggcg
     3301 aagaagtgga cgagcgttac gacgctatcg aggaagtgct gggccgcgag aaaatgctgc
     3361 tgcttaaaga cctgttggca gaacttgcca aaatcgagga tgcgttgaac tcgtaatacg
     3421 ccgtaacgcg cggaaacgtc cgaccgacgg ctttttgaat cagaactgct gcacatgggg
     3481 ggtgccttgt gtgcagcatt cttatatagg ggacagttta aaggggaaaa atggcggatt
     3541 tgcagaaaac ttttcaaact tcgttccgtg atgcgatggc atcctgtgcg gcaggcgttc
     3601 atgtcatcac gacagacggt gcggcagggc gttacggcat tacaatgacg gcggtcgcgc
     3661 cggttaccga cgagccgccg accgtgatgc tgtgcatcaa ccggagtgcg cgaatcattc
     3721 cgatcctgtc ggaaaacggc agcctctgca tcaatatgct ggcggacgaa catcaggatg
     3781 ttgccgaaca ttttgccggg ctgaccggcc tgtcgcccga agagcggttt gcctaccata
     3841 tttggcatcg cggcaaaacg ggacaacttg aaatagaagg cgcgttggcg cacctgcacg
     3901 ggcatattgt cggcaaacat gaaatcggca cgcattttgt gttttacgtc aggctcgacg
     3961 aaatcaaaaa ctgcgggtgc aaacgccccg cgctgctgta tttcagacgg cagtttagat
     4021 ttttagactg atattcggac agatatatga aagcgatgat actggcggca ggacgcggcg
     4081 agcgtatgcg ccctttgacc gataccactc cgaagccgct gctcgatgtg gcgggtaagc
     4141 ctctaatcgg ttggcaccta tgccgtctga agcaggcggg gtttaccgaa atcgtcatca
     4201 accatgcttg gttaggtcgg cagatagaag aggctttggg cgacggctcg gcttatggcg
     4261 tgaacatcgc ctattcgccc gaacccgcag gcggcttgga aacggcaggc ggcatcgcgc
     4321 aggcattgcc gctgttgggc gatgccccgt ttttggtcgt caatggcgac gtgctgaccg
     4381 acatcgattt taccgccgcg tttcaggcgg catcgtccct gcccgagcac atttccgccc
     4441 atctgtggct ggcggacaat ccgccgcaca accccgacgg cgatttttcc ctgctgcccg
     4501 acggcagcgt gcggccggaa gtaaatggcg gcaacggatt gacatttagc ggcgtgggta
     4561 tttaccgtcc tgaaatgttt gatggaatcg aagcgggcag tgtggcgaaa ctcgcgcccg
     4621 tattgcgggg cgaaatgcgg caaaaccgcg tcagcggaca gaagcatacg ggcttgtggc
     4681 tggatgtcgg cacggtatgc cgtctgaaag aggctcaagc ccttgcaggg gcttggaagt
     4741 gaaataaaac ggtggcttgc cgagccggct gccgaacggt tccgaccgga tgtccggcat
     4801 attttcgtgg aggcgtgaaa atagggcgtt cggggctttc cgtccaacaa atgccatctg
     4861 aagccgaccc ctgtcggatg cggcggtttg ccgtcggcgc ggtgtcggat tttattgggt
     4921 aactttgttc agaccgccgc ccgtcagatt gtcaaaaccc ggtttcaggc ggtatggcgg
     4981 attcggttta acgtttcaac gccagcacca acacgcccgc cgttaccagc cccaagccta
     5041 tccattcctg cgtgctgggg cgttcgttga ggaagactac tgccatcagg gcgaccagaa
     5101 ccaggctgaa tttatcgacg ggggcgactt gcgaggcgtt acccagttgc agggctttga
     5161 agtaggcaag ccaagatgcg ccggtagcaa ggccggatag gataaggaat gtccagttgt
     5221 gccccgtaaa gccgttcacg ccctgccatt tgccggtgta ggttaaaaac aataacaaag
     5281 cggcgaggat gaccaaggtg cggatgaagg tagcgaaatc cgaatctatg ccctgcaagc
     5341 ccattttggc gaaaatagcg gtcaatgagg cgaagcctgc cgatgccaat gcccaaaaca
     5401 gccatgcgtt gctgcccatg ttttctcctt ggattgtgaa caatatgaac ggtatttttg
     5461 ttgcagcgtc aaaaatttca ctgcgggttt ggtgcggata acgttataat atgcctgata
     5521 ttattttcaa tccacctgtt tgtcgcctga tgctttcaga cggcatgtcc ctcctcattt
     5581 ctaaaggaaa atcatgagct tcaaaaccga tgccgaaatc gcccaatcct ccaccatgcg
     5641 cccgattggc gaaattgccg ccaagctggg tctgaatgcc gacaacattg agccttacgg
     5701 tcattacaag gcgaaaatca atcctgccga agcgttcaaa ctgccgcaaa aacagggcag
     5761 gctgattttg gttaccgcca ttaatccgac tccggcgggc gaaggcaaaa ccaccgtaac
     5821 catcggtttg gcggacgcgt tgcgccacat cggcaaagat gccgtgattg ccctgcgcga
     5881 accttctctg gggccggtgt tcggcgtgaa aggcggcgcg gcaggcggcg gctatgccca
     5941 agttttgccg atggaagaca tcaatctgca ctttaccggc gacttccacg ccatcggtgc
     6001 ggcgaataac ctgctcgccg ccatgctcga taaccatatc taccaaggca acgagttgaa
     6061 catcgatccg aaacgcgtgc tgtggcggcg cgtggtcgat atgaacgacc gccagttgcg
     6121 caacatcatc gacggcatgg gcaaacctgt tgacggcgtg atgcgtcctg acggtttcga
     6181 cattaccgtt gcttccgaag tgatggcggt attctgcctt gccaaagaca tcagcgattt
     6241 gaaagagcgt ttgggcaaca tccttgtcgc ctacgccaaa gacggcagcc ccgtttacgc
     6301 caaagatttg aaagcacacg gcgcgatggc ggccctgctc aaagatgcga ttaagcccaa
     6361 cttggtacaa accatcgaag gcactccggc cttcgtacac ggcggcccgt tcgccaacat
     6421 cgcccacggc tgcaactccg taaccgcaac ccgtctggcg aaacaccttg ccgactacgc
     6481 cgtaaccgaa gcaggcttcg gcgcggattt gggtgcggaa aaattctgcg atatcaaatg
     6541 ccgtctggcg gatttaaaac ctgatgcggc tgttgtcgtg gctactgtcc gcgctttgaa
     6601 atacaacggc ggcgtggaac gcgccaacct cggcgaagaa aatttagacg ctttggcaaa
     6661 aggtctgcct aatctgctga aacacatttc caacctgaaa aacgtattcg gactgcccat
     6721 cgtcgttgcg ctcaaccgct tcgtgtccga ctccgatgcc gagttggcga tgattgaaaa
     6781 agcctgtgcg gaacacggcg ttgaagtttc cctgaccgaa gtatggggca aaggcggcgc
     6841 gggtggtgca gacttggcgc acaaagtcgt taacgccatc gaaaaccaac cgaacaactt
     6901 caattttgcc tacgatgtcg agttgggcat caaagacaaa atccgtgcga ttgcccaaaa
     6961 agtgtacggc gcggaagatg ttgatttcag cgcggaagcg tctgccgaaa tcgcttcact
     7021 ggaaaaactg ggcttggaca aaatgccgat ctgcatggcg aaaactcaat actctttgag
     7081 tgacaacgcc aaactgttgg gctgccccga aggcttccgc atcgccgtgc gcggcatcac
     7141 cgtttccgcc ggcgcgggct tcatcgtcgc gctgtgcggc aatatgatga agatgccggg
     7201 tctgccgaaa gttccggccg ccgagaaaat cgatgtggac gaacacggcg tgattcacgg
     7261 cttgttctga acggtttttg aaaccggatg ccgtctgaag ccgtttcaga cggcattttt
     7321 tcggaacgcg ggcggcggta tgctataatc cgccgttaaa tttctctatt ttcaggaaaa
     7381 aacatgagtt tgaaatgcgg catcgtcggt ttgcccaacg tcggcaaatc caccctcttt
     7441 aacgcgctga cccaatcggg tatcgaagcg gcaaactatc ctttctgtac catcgaaccc
     7501 aacgtcggca tcgtcgaagt gcccgacccg cgtatggctg aattggcaaa aatcgtcaat
     7561 ccgcaaaaaa tgcagcctgc catcgtcgaa tttgtcgata tcgccggttt ggttgcaggc
     7621 gcgagcaaag gcgaaggtct gggcaaccag ttccttgcca acatccgcga gactgacgcg
     7681 attgttaacg tcgtacgctg ctttgacgac gacaacatcg tccacgttgc aggccgcgtc
     7741 gatccgattg ccgacatcga aaccatcggt acagagttgg cgcttgccga cttggcaagt
     7801 gtggaaaaag ccatcgtccg cgaagaaaaa cgcgcccgtt caggcgacaa agacgcgcaa
     7861 aagctggtcg atttgtgcaa aaaactgctg ccgcatctag acgaaggcaa acccgtgcgt
     7921 tccttcggtt tggacgcgga agaacgcgcg atgctcaaac cgctgttcct gctgaccgcc
     7981 aaaccggcga tgtatgtggg caacgtcgcc gaagacggtt ttgaaaacaa tccgcacctc
     8041 gaacgcctga aagaattggc ggcaaaagaa aacgcccccg tcgtcgccgt ttgcgccgca
     8101 atggaaagcg aaatcgccga attggaagac gacgaaaaag ccgagttcct cgccgaaatg
     8161 ggcttggaag aaccgggcct gaaccgcctg atccgcgcgg gctacgacct cttaggcctg
     8221 caaacctact tcaccgccgg cgtgaaagaa gtccgcgctt ggaccatcca caaaggcgac
     8281 accgccccgc aagccgccgg cgtgattcac accgactttg aacgtggctt catccgcgcc
     8341 caagttatct cctacgaaga cttcatcgct ttaggcggcg aagccaaagc caaagaagcc
     8401 ggcaaaatgc gtgtggaagg caaagaatac gtcgtgcagg atggggatgt gatgcacttt
     8461 ttgtttaacg tgtaacccaa atgcggcagg ttttcagacg gctttgccag aaatgccgtc
     8521 tgaagccggt tttggtggtt ttcggcgttt ccataccgcc ggaatgcggc tgcatcaaaa
     8581 taaaatcccg tccgcatttc cgatttgccc tccccgattc ctgcaaaaca aaccgcctgc
     8641 cccgctgttg caaaaagccg tccggcattc cgaatatccc gagccccgat acaaaatgac
     8701 ctttcagacg gcatttgcgc cgccgcgttt cgagtatagt ggattaactt taaatcagga
     8761 caaggcgacg aaaccgcaga cagtacagat agtacggcaa ggcgaggcaa cgccgtactg
     8821 gtttaaattt aatccactat aaaaacatta tgagccaagc cttaccctac cgcccggaca
     8881 tcgacacatt gcgcgccgcc gccgttttgt ccgtcatcgt gttccatatc gaaaaaaatt
     8941 ggctgccggg cggatttctc ggtgtcgata tattctttgt gatttcaggc tttttgatga
     9001 cggagatcct ccttcgcgaa atgtcggggg ggggggaggt tttccctgaa ggcattttat
     9061 atccgccgca tcaagcggat tctgcccgca tttttcgccg tattggcggc aacgctggca
     9121 ggcggcttct ttttattcac caaagatgat ttctttcttt tgtggaaatc cgcgctgacc
     9181 gccttgggtt tcgcctctaa cctgtatttt gcaaggggga aggattattt cgatcccgcg
     9241 caggaagaaa agcccctgct gcacatctgg tctttgtcgg tcgaagaaca attttacttt
     9301 gtctttccga tactgctgct gcttgtcgcc cgcaaaagcc tgcgcgtaca gttcggcttc
     9361 cttgccgcac tgtgtgcctt aagccttgcc gcctccttta taccttccgc gctcgataaa
     9421 tattacctgc cccacctgcg cgcctgcgaa ttactgatag gatcgctgac cgccgtgtgg
     9481 atgcggtacc ggcaacagcg gaatctcgcc gtcgggaaac ggtatgccgc cgtcggcgca
     9541 ttgttttccg cgtgcatact gtccgcctgc ctgtttgcct attcggaaca aaccgcctat
     9601 ttcccaggcc ccgccgcttt gattccctgt ctggctgttg ccgcgctgat ttatttcaac
     9661 cattacgaac acccgcttaa aaaatttttc caatggaaaa tcaccgttgc cgccggtttg
     9721 atttcctatt cgctttatct gtggcattgg ccgatattgg cctttatgcg ctatatcggc
     9781 ccggacaacc tgccgcctta ttcgccggcg gcagcgatcg tcctgactct agcgttttcc
     9841 ctgatttctt atcactgcat cgaaaagccg tttaaaaaat ggaaaggttc gttcgcacaa
     9901 tccgttttat ggatttatgc cttgcctatg ctcattttgg gggcgggctc gtttttcgcg
     9961 atgaggctgc cgtttatggc gcaatacgac cgcttggggc tgacgcgttc caacacctcc
    10021 tgccacaaca ataccggcaa acaatgccta tggggggata cggaaaaaca gccggaactg
    10081 ctggttttgg gcgattccca cgccgaccat tacaaaacat tcttcgatgc cgtgggcaaa
    10141 aaagaaaaat ggtccgccac aatggtttcc gccgacgctt gcgcctatgt ggaaggctga
    10201 gacctttgca aaatccccca aaatccccta aattcccacc aagacattta ggggattttc
    10261 catgagcacc ttcttccagc aaaccgccca agccatgatt gctaaacaca tcaaccgctt
    10321 cccgctattg aagttggacc aggtgattga ttggcagccg atcgaacagt atctgaatcg
    10381 tcaaagaacc cgttacctta gagaccaccg cggccgtccc gcctaccccc tgttgtccat
    10441 gttcaaagcc gtcctgctcg gacaatggca cagcctctcc gatcccgaac tcgaacacag
    10501 cctcattacc cgcatcgatt tcaacctgtt ttgccgcttt gacgaactga gcatccccga
    10561 ttacagcacc ttatgccgct accgcaactg gctggcgcaa gacgacaccc tgtccgaatt
    10621 gctcaaactg attaactgcc aactgaccga aaaaggctta aaagtagaga aagcatccgc
    10681 cgctgtcgtt gatgccacca ttattcagac cgccggcagc aaacagcgtc aggccataga
    10741 agttgacgaa gaaggacaaa tcagcggcca aaccacaccg agtaaagaca gcgatgcccg
    10801 ttggataaag aaaaacggcc tctacaaact cggttacaaa caacataccc gtaccgatgc
    10861 ggaaggctat atcgagaaac tgcacatcac ccccgccaat gcccatgagt gcaaa
//
LOCUS       DAXHNP010000061        10700 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.061, whole genome shotgun sequence.
ACCESSION   DAXHNP010000061 DAXHNP010000000
VERSION     DAXHNP010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10700
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.061"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..556)
                     /locus_tag="ACFM5C_001137"
     CDS             complement(<1..556)
                     /locus_tag="ACFM5C_001137"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFC6068846.1"
                     /translation="MVWKTLGEIAEYSKNRICSDKLNEHNYVGVDNLLQNREGKKLSG
                     YVPSEGKMTEYIANDILIGNIRPYLKKIWQADCTGGTNGDVLVIRVTDEKVNPKYLYQ
                     VLADDKFFAFNMKHAKGAKMPRGSKAAIMQYKIPIPPLPEQEKIVAILDKFDTLTHSV
                     SEGLPYEIALRRKQYEYYREQLLAF"
     gene            complement(586..1325)
                     /locus_tag="ACFM5C_001138"
                     /pseudo
     CDS             complement(586..1325)
                     /locus_tag="ACFM5C_001138"
                     /inference="COORDINATES: protein motif:HMM:NF013579.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            complement(1297..1380)
                     /locus_tag="ACFM5C_001139"
                     /pseudo
     CDS             complement(1297..1380)
                     /locus_tag="ACFM5C_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503458.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-damage-inducible D domain protein"
     gene            complement(1497..3041)
                     /locus_tag="ACFM5C_001140"
     CDS             complement(1497..3041)
                     /locus_tag="ACFM5C_001140"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HFC6068847.1"
                     /translation="MMTEMQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI
                     SENFTDYMQAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNE
                     ELNTKLKEIFTAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGV
                     AELDFGSFEDHHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEK
                     VNKIYDPACGSGSLLLQAKKQFDEHIIEEGFFGQEINHTTYNLARMNMFLHNVNYNKF
                     HIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDDRFAPAGVLAPKSKA
                     DFAFILHALNYLSGRGRAAIVSFPGIFYRGGAEQKIRQYLVEGNYVETVIALAPNLFY
                     GTGIAVNILVLSKHKDNTDIQFIDAGSFFKKETNNNVLTEEHIADIVKLFADKADVPH
                     IAQNAAQQTVKDNGYNLAVSSYVEPEDTREIIDIKQLNAEIGETVAKIERLRREIDEV
                     IAEIEA"
     gene            complement(3114..4118)
                     /gene="rfaD"
                     /locus_tag="ACFM5C_001141"
     CDS             complement(3114..4118)
                     /gene="rfaD"
                     /locus_tag="ACFM5C_001141"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFC6068848.1"
                     /translation="MTIIVTGAAGFIGSNIVKALNQRGITDIVAVDNLSKGEKFKNLA
                     ECEIAHYLDKHEFIRQVREHILPYQNIEAVFHQGACSDTMNHDGLYMMENNYQYTLDL
                     LNWCQDERIPFLYASSAAVYGKGEIFREERELEKPLNVYGYSKFLFDQVLRRRMKEGL
                     TAQVVGFRYFNVYGQHEQHKGRMASVTFHHFHQYREHGYVNLFGSNDGYGNGEQTRDF
                     VSVEDVAKVNLYFFDHPELSGIYNLGTGRSQQFNELAAATVNACRAAEGKPEMSLKEL
                     VEEELIRYIPFPDALKGKYQSFTQADITKLREAGYTEEFFDVKSGVERYVKWMLENLA
                     "
     gene            complement(4159..5277)
                     /locus_tag="ACFM5C_001142"
     CDS             complement(4159..5277)
                     /locus_tag="ACFM5C_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6068849.1"
                     /translation="MPDFQRITIENIEYFIVDSIQNLRAEDSFIHRNNKLSVFGGNGE
                     ARKYVGSYIDDSGRKLSTFFEYENWGITETKNGRRVEYPLIQKNCFFNKKNLQRYLVD
                     AKVEYHKQEQKYHHDISRFYDDYVLSINNLPTENIFFSIHDVSDHLENSKGYRRGYIR
                     SEDDIWSIWRKIVLPKISYLSILKLLPVKDIEDSEPLFYFRIFLDYQFRSIVHPQLLS
                     REKLEIPASEFNQFVEQEIIKQKSRKGQQKYRKDVINHMPQCPFTLITDEVLLRASHI
                     KPYMVCITEKNEKEALDYLNGLALTPTYDWLFDQGYITFLDDGRLICGTRLSRYTWEK
                     LNINPNAKNKMRIYPEGREKYLEYHRKFVFQDNIDDFL"
     gene            complement(5279..6514)
                     /locus_tag="ACFM5C_001143"
     CDS             complement(5279..6514)
                     /locus_tag="ACFM5C_001143"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6068850.1"
                     /translation="MTISTMAQTHDTRLQKTLLFPSQQGWKSKTFLKPDSHIRLATVF
                     SGIGAVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDITQFDARKFRN
                     QVDILVGGSPCQAFSMVGKRAGLEDTRGTLFYEFSRVVDEVQPKIFIYENVKGLLNHD
                     NGKTWKVVKSVFYSLGYDLYFQIMNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIE
                     LEHTMQDFLEDYTDSKYFLREKGVKFVTSSKNRQKRYTQINGEIALCQKANQQFNWHG
                     DFIFQAARESEFDDFIFDVNNVEEKYYLSEKIKNYVLAGGTKNFKTSTETDLPVARPL
                     LQTMHKMHRAGVDNYVTHNRGRIRKLTPRECLRLMGFRDDFKILVSDTQMYRQAGNSI
                     VVDVLIAILKQMDITLYGE"
     gene            complement(6551..7522)
                     /gene="hldA"
                     /locus_tag="ACFM5C_001144"
     CDS             complement(6551..7522)
                     /gene="hldA"
                     /locus_tag="ACFM5C_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose synthase"
                     /protein_id="HFC6068851.1"
                     /translation="MSAKFQQETLKSRFAQAKVLVVGDVMLDRYWFGDVSRISPEAPV
                     PVAKIGRIDQRAGGAANVARNIASLGGRAGLLSVTGNDEAADALDALMVQDGVASYLM
                     RDKQIATTVKLRVVARNQQLIRLDFEEHPNCEVLEQIKQKYREILPEYDAIIFSDYGK
                     GGLSHISDMIDWAKHAGKTVLIDPKGDDYEKYVGATLITPNRAELKEVVGSWKNESEL
                     TEKAQNLRRHLDLTAVLLTRSEEGMTLFSEGEPIYQPTRAQEVYDVSGAGDTVIAGMG
                     LGLAAGCTMPEAMYLANTAAGVVVAKLGTAVCSFAELIKALSGQSTM"
     gene            complement(7577..8317)
                     /gene="pyrF"
                     /locus_tag="ACFM5C_001145"
     CDS             complement(7577..8317)
                     /gene="pyrF"
                     /locus_tag="ACFM5C_001145"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003756133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HFC6068852.1"
                     /translation="MNPLISDFQTPQQRTPVIVALDFSNEKDTLGFVRNLDPTLCQIK
                     IGKELFTATGRNLAESLINQGFKLFLDLKYHDIPHTVAQACKVAADMGVWMVDMHASG
                     GRRMMEAAAEAVAGYGTKPLLIGVTVLTSMEQSDLAEIGLNTAPEEQVIRLAKLAQSS
                     GLDGVVCSAQEAAPLRRELGQDFVLVTPGIRLDVAGNNDDQRRIMTPAEALAAASTYL
                     VMGRPVTQAADPVAVLREVNRVANLEAN"
     gene            complement(8843..9490)
                     /gene="adk"
                     /locus_tag="ACFM5C_001146"
     CDS             complement(8843..9490)
                     /gene="adk"
                     /locus_tag="ACFM5C_001146"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFC6068853.1"
                     /translation="MKALFLGAPGAGKGTQAQFITAAFGIPQISTGDMLRAAIKAGTP
                     LGLEAKKIIDEGGLVRDDIIIGMVKERIAQDDCKNGFLFDGFPRTLAQAEAMVEAGVD
                     LDAVVEIDVPDSVIVDRMSGRRVHLASGRTYHVTYNPPKVEGKDDVTGEDLIQRDDDK
                     EETVKKRLAVYHEQTEVLVDFYSKLEGEHAPKYIKVDGTQPVEAVKAEVLGALGK"
     gene            9705..10544
                     /gene="htpX"
                     /locus_tag="ACFM5C_001147"
     CDS             9705..10544
                     /gene="htpX"
                     /locus_tag="ACFM5C_001147"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HFC6068854.1"
                     /translation="MKRIFLFLATNIAVLVVINIVLAVLGINSRGGTGSLLAYSAVVG
                     FTGSIISLLMSKFIAKQSVGAEVIDTPRTEEEAWLLNTVEAQARQWNLKTPEVAIYHS
                     PEPNAFATGASRNSSLIAVSTGLLDHMTRDEVEAVLAHEMAHVGNGDMVTLTLIQGVV
                     NTFVVFLSRIIANLIARNNDGSQSQGTYFLVSMVFQILFGFLASLIVMWFSRQREYRA
                     DAGAAKLVGAPKMISALQRLKGNPVDLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARL
                     KSL"
BASE COUNT         2585 a         2498 c         2490 g         3127 t
ORIGIN      
        1 gaaaggcaag cagctgttcg cggtaatatt cgtattgttt gcggcgcagg gcgatttcgt
       61 acggcaggcc ttcgctgacg gagtgggtca gggtgtcgaa tttgtctagg atggcgacga
      121 ttttttcctg ttcggggagt ggtgggatgg ggattttata ttgcataatc gctgctttgc
      181 tgccacgcgg catttttgca cctttggcgt gcttcatatt aaaggcaaaa aatttatcat
      241 cggccaatac ctgatacaga tattttggat taaccttttc atctgttacc cggataacca
      301 aaacatcacc gtttgttccg cccgtgcagt ctgcctgcca gatttttttc aaatacggac
      361 gaatatttcc aatcaagatg tcattggcaa tatattctgt catttttccc tcacttggaa
      421 cataaccgga taacttttta ccttctctat tttgtaagag attatccacg cccacgtaat
      481 tatgttcgtt cagtttatcc gaacaaatac ggttttttga atattcggca atctccccca
      541 acgtcttcca aaccacatct ttcagacggc attgatagcc atcagctatc cccccccccc
      601 gatttgattg tcaaaatcta aaagaaagtc gcggtaatac cggtattggc gtttgcgcag
      661 ggctaattcc gcttccagct cggtgaattt gtcaagtatt tttacaattt tttgttgggt
      721 ttctaggggc gggatgggaa taagtaagtt ttgcaattca cttttagcaa gtgctggtat
      781 acctgctccg tattgacatt gcatgaatgt aatttgcttc atttttaaaa ataatatgca
      841 aaccgttgca atagtttgtc ttcgttcgct ttaatagtat atgcgtgagc tcctgcaaaa
      901 aaagggatat ccatccaatt aacaaacccc gcacttgctc ctccttggct aataacaatc
      961 gtgccagctt cgttattgta ttcatgccaa taacctgatg gattaatacc gccattgatt
     1021 acgggatact tatctttttc tctaagtagt gatttattaa gctgctttcc ctttcctata
     1081 cttgccactt cccccaacgg cttccactcc accggtgccg tctgaatcat ctcaatcaat
     1141 tttttcgctt tactttgtat atccatggtt gttttccgtt tctttcccgc tgcggcggga
     1201 tgtggggcgg ttatccgccg tagggtgggc tccagcccaa caatccgcct gctgttttgc
     1261 cgttgtttcg gggggctgaa gcccacccta ctttgtctgc aaggtgcaca ccgaccaata
     1321 ttcattgcct gtttcgtcga tgtgtttggc gttttcaaaa gcgttgtttt ctgttgtcat
     1381 gtatttttcc ccgaaaattt cttgatttga acttgtaaag attacttaca ggttaccgcc
     1441 cgtattttca gacggcctct ttcccattca gttgttgcaa aatatgcaac aactgcctag
     1501 gcctcaatct ctgcaatcac ttcgtcaatt tcgcgccgca gccgttcgat tttggcgacg
     1561 gtttcgccga tttcggcgtt aagctgtttg atgtcgataa tttcgcgtgt gtcttcgggt
     1621 tcaacatagc tgctgacggc gaggttgtag ccgttgtctt tgacggtttg ctgggcagcg
     1681 ttttgggcga tatgcggcac atcggctttg tcggcgaaga gtttgacgat gtcggcaatg
     1741 tgttcttcgg ttaagacgtt gttgttggtt tcttttttaa agaagctgcc tgcgtcgata
     1801 aattggatgt cggtattgtc tttgtgtttg gacaaaacca ggatattgac ggcgatgccg
     1861 gtgccgtaaa agagattggg cgcaagggca atcacggttt ccacgtagtt gccctccacc
     1921 agatattggc ggattttctg ctctgcgccg ccgcgataga aaataccggg gaaagagacg
     1981 atggcggcgc ggcctctgcc ggaaaggtag ttcagtgcgt gcaggatgaa ggcaaaatcg
     2041 gctttggatt tcggtgcgag tacgcctgcg ggggcaaagc ggtcgtcgtt gattaaggtg
     2101 gggtcgtcgc tgcctatcca gttgatggaa taaggcggat tggaaacgat ggcatcaaag
     2161 ggtttgctgt ctttgagctt gggattagtc agtgtgtcgc ccaattcgat gtggaatttg
     2221 ttgtaattga cgttgtgcag aaacatattc atgcgggcga ggttgtaggt ggtgtggttg
     2281 atttcctgcc cgaagaagcc ttcttcgatg atgtgctcgt caaactgttt tttcgcctgc
     2341 aagagcaggc tgcccgagcc gcaagctggg tcgtagattt tgtttacttt ctcctgcccg
     2401 tgcaccgcca gccgcgcaat cagcttggat acgctttgcg gggtgaaaaa ttcgccgccg
     2461 gatttgcctg cgttggcggc gtagttggaa atcaggtatt cgtaggcatc gccgaaaagg
     2521 tcgatgtggt ggtcttcaaa actgccgaaa tcaagttccg ccacgccttt gaggacggcg
     2581 gcaaggcgtt tgttcttgtc ggcaactgtg ctgccgagcc ggctgctggt ggtatcgaag
     2641 tcgtcaaaca ggcctttaat gtcttgttcg gacggatagc cggaggcgga gctttcaatc
     2701 gcggtaaaga tttctttcag cttggtgttg agctcttcgt tttgatgggc ttcggcggca
     2761 atattgcaaa aaagctggct ggggtagatg aaatagcctt taactttgac ggcatcgtct
     2821 ttgatttcgg gcgtgatgat gctgtccggc atagcggcgt aatcaatact gctgtcgcct
     2881 gcctgcatat agtcggtgaa gttttcgctg ataaagcggt agaaaagtgt gccgagaacg
     2941 tattgtttaa agtcccagcc atccaccgcg ccgcgtactt cgtcggcaat tttccaaatt
     3001 tggcggtgca gttgggcgcg ttgttgcatt tcggtcatca tcgaaatcca tataaaagtt
     3061 aaacaaatca aaatcgcctg atattttcag acgatttttt acgggcattc aaattaagcc
     3121 aaattttcca gcatccattt gacgtagcgc tcgacgcctg atttgacatc gaaaaattct
     3181 tccgtataac ctgcctcacg caatttggtg atgtcggctt gggtgaagct ctggtatttg
     3241 cctttgagtg cgtcggggaa ggggatgtag cggataagtt cttcttccac cagctctttc
     3301 aagctcattt caggcttgcc ttcggcggcg cggcaggcgt tgacggtggc ggcggcgagt
     3361 tcgttaaact gttggctgcg gccggtaccg aggttgtaga tgccggaaag ttcgggatgg
     3421 tcgaagaagt agaggttgac tttggcaacg tcttcgacgc tgacaaagtc gcgggtttgt
     3481 tcgccgttgc cgtaaccgtc attgctgccg aacaggttga cgtaaccgtg ttcgcggtat
     3541 tggtggaaat ggtggaaggt gacggatgcc atgcggcctt tgtgttgttc gtgttgtccg
     3601 taaacgttga agtagcggaa gccgacgact tgggcggtga gaccttcttt catgcggcgg
     3661 cgcaatactt ggtcgaacag gaatttggag tagccgtaca cattaagcgg tttttcgagt
     3721 tcgcgctctt cgcggaagat ttcgcctttg ccgtaaaccg ccgcactgga ggcataaagg
     3781 aagggaatgc gttcgtcctg acaccagttc aacaaatcca gcgtgtactg gtagttgttt
     3841 tccatcatat acaaaccgtc gtggttcatc gtatcggaac acgcgccttg atggaaaacg
     3901 gcttcgatgt tttgataagg taaaatgtgt tccctcactt ggcggatgaa ttcgtgtttg
     3961 tcgagataat gggcgatttc gcactcggca aggtttttga atttttcgcc tttgctcaaa
     4021 ttatcgacgg cgacgatgtc ggtaataccg cgttgattaa gtgctttgac gatgttgctg
     4081 ccgataaagc cggccgcgcc tgttacgatg atggtcatat tcggtttcct ttgttttgag
     4141 taaaattaat aaacttagtt acaagaaatc atcgatattg tcctgaaaca caaatttgcg
     4201 atgatattcc aaatattttt ctcttccttc gggatatatt ctcatcttat tttttgcatt
     4261 tggattgata ttaagttttt cccatgtgta acggcttagt cgagtaccgc aaatcaaacg
     4321 accatcatcc aagaaagtaa tataaccttg atcgaacaac caatcataag tcggcgttaa
     4381 agctaaccca tttaaataat ctaatgcctc tttctcattt ttctcagtaa tacaaaccat
     4441 ataaggttta atatgactag cccttaacaa aacctcatct gtaattaatg taaatggaca
     4501 ttgcggcata tgatttataa catccttgcg atatttctgc tgcccttttc tacttttctg
     4561 tttaatgatt tcttgctcta cgaattgatt aaattctgaa gccggtattt ctaatttttc
     4621 tcttgataag agttgcgggt gcacgataga gcgaaattga taatccaaaa atattcggaa
     4681 ataaaataat ggttctgaat cttctatatc tttgacaggc aatagtttaa gaattgataa
     4741 ataactaatt ttgggcaata caatcttacg ccaaattgac catatatcat cctccgaacg
     4801 gatataaccc ctacggtaac ctttagaatt ttccaaatgg tctgatacat catggattga
     4861 aaagaaaata ttttctgtag gcagattatt aatacttaaa acgtaatcat cataaaacct
     4921 tgaaatatca tgatgatatt tctgttcttg tttgtgatat tcaacttttg catcaaccaa
     4981 ataacgctgt aaatttttct tattaaaaaa acaatttttc tgaatgagag gatattctac
     5041 cctccttcca ttttttgtct cagtaatccc ccaattttca tactcaaaaa atgtacttag
     5101 ttttcgacca ctatcatcaa tataactacc tacatatttg cgtgcttccc cattaccacc
     5161 aaaaacagat aacttgttat tcctgtgaat aaaactatct tccgcacgta aattttgaat
     5221 actatcgaca ataaaatact ctatgttttc aatagtaatt ctttgaaaat ccggcatttt
     5281 actctccata aagcgtaata tccatttgtt ttaatatagc gattaataca tcaacaacaa
     5341 tactgtttcc cgcttggcga tacatttgag tatcactaac taaaatttta aaatcatctc
     5401 taaaacccat tagccgcaaa cattccctag gtgttaattt acgaatacgt ccacgattat
     5461 gagtaacata attatcaacc ccggcacgat gcattttatg catagtttgc aataatgggc
     5521 gagctacagg caaatcagtt tccgtactgg ttttaaaatt ttttgttcct cctgccaaaa
     5581 cataattttt gattttttca gaaagataat atttttcctc aacgttattt acatcaaaaa
     5641 taaagtcatc aaattcagat tcgcgggctg cctgaaaaat aaaatcacca tgccaattaa
     5701 attgttgatt tgctttttgg cataaggcaa tttctccatt aatctgtgta taacgttttt
     5761 gtctattttt agaactggta acaaatttca cacccttttc acgtaaaaaa tatttgctat
     5821 cagtatagtc ctccaaaaaa tcttgcatag tatgttctaa ttcaatcttt tcaggaaact
     5881 gaaaaccatt tataggaggg gtatgaaagc caacaacaaa aatacgctca cgatgttgag
     5941 gaatcccata atccttacta ttcattattt ggaaatataa gtcataacca agtgaataaa
     6001 aaacactttt tacaactttc caagtttttc cattatcatg attgagcaag ccctttacat
     6061 tttcataaat aaatatcttt ggttggactt catccacaac gcgagaaaat tcatagaata
     6121 atgttcctcg tgtatcttct aatcctgcac gtttgccaac catggaaaat gcttggcaag
     6181 gactgcctcc aactaaaata tcaacttgat ttctaaactt tctcgcatca aattgagtaa
     6241 tgtcgttatg ccaaaaatct tcatttaatt tatagtttcc aagataactt tttttaacgt
     6301 atggatcaat atctcctgca aaaacaatgg tatggtttaa atttaatcgg tggaatgcct
     6361 gttcaaccgc accaatcccg ctgaatacgg ttgctaatct aatatgtgaa tcaggtttaa
     6421 gaaaagtttt agatttccaa ccttgttgac tgggaaagag caaagttttt tgtaatcgag
     6481 tatcgtgtgt ctgtgccatt gtcgaaatag tcatacttat atcgttctgt ttatcttatc
     6541 aatatgaaaa ctacattgtt gattgccctg acaatgcctt gatcaattcg gcaaacgagc
     6601 aaaccgccgt accgagtttc gccacgacaa ccccggccgc agtattggca aggtacatgg
     6661 cttcgggcat ggtgcagcct gccgccaaac ccaagcccat tccggcaatg acggtgtcgc
     6721 ccgcaccgga tacgtcgtaa acttcttggg cgcgggtggg ctggtaaatc ggttcgcctt
     6781 cgctgaacaa ggtcatgcct tcttcgcttc gggtcagtaa aacggcggtc aggtcgaggt
     6841 ggcggcgcag gttttgcgct ttttcggtca gctcgctttc gtttttccaa ctgccgacca
     6901 cttctttcaa ttcggcgcgg ttaggcgtaa tcagagttgc accgacatat ttttcgtaat
     6961 cgtcgccttt ggggtcgatt aagacggttt tgccggcgtg tttcgcccaa tcgatcatat
     7021 cggagatatg cgacaggccg cctttgccgt agtctgaaaa aatgattgcg tcgtattcgg
     7081 gcaagatttc gcggtatttc tgcttgattt gttccaacac ttcgcagttg ggatgttctt
     7141 caaaatcaag acggataagc tgctggttgc gggcgacgac gcgcagtttg acggtggtgg
     7201 cgatttgttt gtcgcgcatc agataggagg cgacgccgtc ctgcaccatc agcgcatcga
     7261 gcgcgtcggc ggcttcgtcg ttgccggtta cggacaacag ccctgccctg ccgcccaacg
     7321 aagcgatgtt gcgcgcgaca tttgccgctc cgcccgcgcg ttggtcgatt cgtccgattt
     7381 tcgccaccgg cacgggggct tcgggcgaaa tacgggacac atcgccgaac caatagcggt
     7441 cgagcatcac gtcgccgaca accaggactt tggcttgcgc gaaacgggat ttgagggttt
     7501 cttgttggaa cttggcggac atattgcctc cgttgtattt tttcagacgg cctcagcctg
     7561 taaggccgtc tgaaaatcag tttgcttcaa ggtttgccac gcggttcact tcgcgcaata
     7621 cggctaccgg atcggcagct tgggttacag gacgacccat taccaaataa gtcgaagcgg
     7681 cagccaaggc ttcggccggt gtcatgatgc ggcgctggtc atcattattg ccggcaacgt
     7741 ccaagcggat gccgggcgtg accaagacaa aatcttgtcc caactcgcgg cgcagcggtg
     7801 cggcttcttg ggcggaacag accacgccgt ccaagcccga actttgcgcc agtttcgcca
     7861 agcggatgac ttgttcttca ggggcggtgt tcaaaccgat ttccgccaaa tcgctttgtt
     7921 ccatgctggt caacacggtt acgccgatta agagcggctt cgtgccgtat ccggcaacgg
     7981 cttctgctgc ggcttccatc atacggcggc cgcccgatgc gtgcatatcg accatccaaa
     8041 cgcccatatc ggcagcgact ttgcaggctt gcgcgacggt gtggggaata tcgtggtatt
     8101 tcaaatcgag gaaaagtttg aaaccttgat tgattaagct ttctgccaaa ttgcgtcccg
     8161 tcgcggtaaa cagctctttg ccgattttga tttgacacaa tgtcgggtca aggttgcgga
     8221 cgaatccgag cgtgtctttt tcgttggaaa aatcaagggc gacgataacg ggggtgcgtt
     8281 gttgcggagt ttggaagtcg gagattaaag gattcatggt gttttcgttt cgggttttca
     8341 gacgaccttt atcgtctttt tcgcagtata gtggattaac tttaaaccgg tacggcgttg
     8401 tctcgcctta gttcaaagag aacgcttctc taaggtgctg aagcacaaag tgaatcggtt
     8461 ccgtactgtt tgtactgcct gcggcttcgt cgccttgtcc tgatttttgt taatccacta
     8521 taagaacgta aattcaaacc gtaggtcggg cattgatgtc cgacctacgc ggactcaagc
     8581 ctccgacaaa ctgtttcgga taaatttgaa ccggtacatc agccgtcatt cccgcgtagg
     8641 cgggaatcca ttgataaaac tcagttcatc agatttaaac agcgattgcc caaattcaga
     8701 aatggattcc cgcctgcgcg ggaatgacgc caaatgatta tttttcggtt gcaacacgct
     8761 gtttatcaaa aacaggtcgt ctgaaaacct gattttctgt tttcagagtg cgaagcctgc
     8821 ccgtgggtac gaccttttcg atttatttgc ccaatgcgcc caatacttcg gctttcacgg
     8881 cttctaccgg ctgagtgccg tcaactttga tgtatttagg cgcgtgttcg ccttccagtt
     8941 tgctgtaaaa atcgaccaaa acttcggttt gctcgtggta aacggcaagg cgttttttca
     9001 cggtttcttc tttgtcgtcg tcgcgctgaa tcaaatcttc gccggttacg tcgtctttgc
     9061 cttcaacttt gggcgggttg taggtaacgt ggtaagtacg gccggaagcc aaatgcacgc
     9121 ggcggccgct catgcggtcg acaatcacgc tgtcaggcac atcgatttca acgactgcat
     9181 ccaaatccac gcctgcttca accatcgctt cggcttgtgc caatgtgcgc gggaaaccgt
     9241 caaacaggaa accgtttttg cagtcgtctt gcgcgatgcg ttctttgacc atgccgataa
     9301 tgatgtcgtc gcgcaccaag ccgccttcat caatgatttt tttcgcttcc aaacccaagg
     9361 gcgtgcctgc cttaatcgcg gcgcggagca tgtcgccggt agagatttgc ggaatgccga
     9421 acgcggcggt gatgaattgc gcctgagtgc ctttgcccgc gcccggcgcg cctaaaaata
     9481 atgctttcat gaagtgatcc tttgaaatgt gtttattgga atcaaacaga tggtttacga
     9541 ttctacacgg cttggcacaa tagttcaaaa accaactgca caaactgcca tttgcaagca
     9601 aatgttttgc atacctttgc cgagtctgat attcacaagc cggcaacttt ttgggacaat
     9661 ccccaaaatt tcaaaacatc acaccctacc aaaaaggaac atccgtgaaa cgaatttttc
     9721 tgtttttggc taccaatatc gctgttttgg tcgtaatcaa cattgttttg gcggttttgg
     9781 gcatcaacag ccggggcggc acgggcagcc tgttggcgta ttccgccgtc gtcggcttca
     9841 ctggttcgat tatttcgctg ctgatgtcca aattcatcgc caaacaatcg gtcggcgcgg
     9901 aagttatcga cacgccgcgc accgaagaag aagcctggct tttgaacact gtcgaagccc
     9961 aagcgcggca atggaacctg aaaacgcccg aagtcgccat ctaccactcc cccgaaccca
    10021 atgcctttgc cacgggcgca tcgagaaaca gctccctgat cgccgtcagc accggtttgc
    10081 tcgaccatat gacgcgcgac gaagtggaag ccgtattggc gcacgaaatg gcacacgtcg
    10141 gcaacggcga tatggttacg ctgacgctga ttcaaggcgt ggtcaatacc ttcgtcgtgt
    10201 tcctgtcgcg cattattgcc aacctgattg cccgaaacaa cgacggcagc cagtcgcagg
    10261 gaacttattt cctggtcagc atggtattcc aaatcctatt cggcttcctt gccagcttaa
    10321 ttgtcatgtg gttcagccga caacgcgaat accgcgccga cgcgggcgcg gcaaaactgg
    10381 tcggcgcacc gaaaatgatt tccgccctgc aaaggcttaa aggcaacccg gtcgatttgc
    10441 ccgaagaaat gaacgcaatg ggcatcgccg gagatacgcg cgactccctg ctcagcaccc
    10501 acccttcgct ggacaaccga atcgcccgcc tcaaatcgct ctgagccgat ttgaaacaac
    10561 aaaaaaaccg tacgcgcaag cagtacggtt ttttgtatat gctgtctgaa aacatcaggt
    10621 ttccatacca acaccaaccg tatccatttc cgcaccggat acgccgcatt gatataccct
    10681 gataaaccgt gtccggacag
//
LOCUS       DAXHNP010000062        10636 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.062, whole genome shotgun sequence.
ACCESSION   DAXHNP010000062 DAXHNP010000000
VERSION     DAXHNP010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10636
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.062"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(163..1209)
                     /gene="adhP"
                     /locus_tag="ACFM5C_001148"
     CDS             complement(163..1209)
                     /gene="adhP"
                     /locus_tag="ACFM5C_001148"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HFC6068855.1"
                     /translation="MKMQAVVVNKNVAGDVEIVEREVRPLEYGEALVEVEYCGVCHTD
                     LHVAAGDYGEKPGRVLGHEGIGLVKEVADGVKNLKVGDRVSIAWLFQSCGSCEYCNTG
                     RETLCRSVLNAGYTADGGMATHCIVSADYAVKVPEGLDPAQASSITCAGVTTYKAIKV
                     SGVRPGQWIAIYGAGGLGNLGVQYAKKVFGAHVVAIDINDDKLAFAKETGADLVVNAA
                     KEDAAKVIQEKTGGAHAAVVTAVSAAAFNSAVNCVRAGGRVVAIGLPPESMDLSIPRL
                     VLDGIEVVGSLVGTRKDLEEAFQFGAEGLVVPKVQLRALDEAPAIFQEMREGKITGRM
                     VIDMKKECGCGHHH"
     gene            complement(1492..1881)
                     /locus_tag="ACFM5C_001149"
     CDS             complement(1492..1881)
                     /locus_tag="ACFM5C_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6068856.1"
                     /translation="MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRVRLSEVR
                     TTLLHNAQTMERYYRQKGTFATYDKNKLKQNEYFKITLSEVSPDHFTLQAAPDPMTND
                     GETCVVTLNDGGTIAASGTNQSCPGFD"
     gene            2107..3285
                     /locus_tag="ACFM5C_001150"
     CDS             2107..3285
                     /locus_tag="ACFM5C_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacA family efflux pump subunit"
                     /protein_id="HFC6068857.1"
                     /translation="MAKMMKWAAVAAVAAAAVWGGWSYLKPEPQAAYITETVRRGDIS
                     RTVSATGEISPSNLVSVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEK
                     SKLETYQAKLVSAQIALGSAEKKYKRQAALWKENATSKEDLESAQDAFAAAKANVAEL
                     KALIRQSKISINTAESELGYTRITATMDGTVVAILVEEGQTVNAAQSTPTIVQLANLD
                     MMLNKMQIAEGDITKVKAGQDISFTILSEPDTPIKAKLDSVDPGLTTMSSGGYNSSTD
                     TASNAVYYYARSFVPNPDGKLATGMTTQNTVEIDGVKNVLIIPSLTVKNRGGKAFVRV
                     LGADGKAAEREIRTGMRDSMNTEVKSGLKEGDKVVISEITAAEQQESGERALGGPPRR
                     "
     gene            3351..5285
                     /locus_tag="ACFM5C_001151"
     CDS             3351..5285
                     /locus_tag="ACFM5C_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HFC6068858.1"
                     /translation="MSLIECKNINRYFGSGENRVHILKDISLSIEKGDFVAIIGQSGS
                     GKSTLMNILGCLDTAGSGSYRIDGIETAKMQPDELAALRRERFGFIFQRYNLLSSLTA
                     RDNVALPAVYMGAGGKERSARADKLLQDLGLASKEGNKPGELSGGQQQRVSIARALMN
                     GGEIIFADEPTGALDTASGKNVMEIIRRLHEAGHTVIMVTHDPGIAANANRVIEIRDG
                     EIISDTSKNPEIPASNVGRIREKASWSFYYDQFVEAFRMSVQAVLAHKMRSLLTMLGI
                     IIGIASVVSVVALGNGSQKKILEDISSIGTNTISIFPGRGFGDRRSGRIKTLTIDDAK
                     IIAKQSYVASATPMTSSGGTLTYRNTDLTASLYGVGEQYFDVRGLKLETGRLFDENDV
                     KEDAQVVVIDQNVKDKLFADSDPLGKTILFRKRPLTVIGVMKKDENAFGNSDVLMLWS
                     PYTTVMHQITGESHTNSITVKIKDNANTQVAEKGLTDLLKARHGTEDFFMNNSDSIRQ
                     IVESTTGTMKLLISSIALISLVVGGIGVMNIMLVSVTERTKEIGIRMAIGARRGNILQ
                     QFLIEAVLICVIGGLVGVGLSAAVSLVFNHFVTDFPMDISAASVIGAVACSTGIGIAF
                     GFMPANKAAKLNPIDALAQD"
     gene            complement(5698..6480)
                     /locus_tag="ACFM5C_001152"
     CDS             complement(5698..6480)
                     /locus_tag="ACFM5C_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HFC6068859.1"
                     /translation="MKTKLIKILTPFTVLPLLACGQTPVSNANAEPAAKAESAGKSVA
                     ASLKARLEKTYSAQDLKVLSVSETPVKGIYEVVVSGRQIIYTDAEGGYMFVGELINID
                     TRKNLTEERAADLNKIDFASLPLDKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEK
                     MTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVA
                     ETTSLGEQFGFNGTPTLVFPNGRSQSGYSPMPQLEEIIRKNQ"
     gene            6619..8808
                     /locus_tag="ACFM5C_001153"
     CDS             6619..8808
                     /locus_tag="ACFM5C_001153"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFC6068860.1"
                     /translation="MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMV
                     WETDIAPDMDTARILSIQTTFLDEPPLPESWRDLLSFTSRYYHYPTGQAVFAALPQGL
                     KETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
                     AKLIEDWAVQGWIETTEAAKPVLRPYHGQASHSEFVLNANQQKASDAIQTAFGSFQPF
                     LLYGITGSGKTEVYFDAMAKVLAQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLH
                     SQMAAGKRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDEEHDGSFKQDNELRY
                     HARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDIL
                     NVGRLKLDNGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGYTFGCPNCSA
                     KMVLHQRARQLRCHHCDHREPIPYKCPDCGNQDLTAVGHGTQRVEETLRTFLPKAAVV
                     RVDRDSTAHKNDWADLYRRIADNKIDILVGTQMLAKGHDFARLNLVIVLNADGSLYSA
                     DFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNE
                     RQMFAMPPFGFQTAVRADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLA
                     ERERAQIFLESPSRQDLHRAVSLWAQVLQQNRDGKIRWSVDVDPQEA"
     gene            complement(8855..9928)
                     /locus_tag="ACFM5C_001154"
     CDS             complement(8855..9928)
                     /locus_tag="ACFM5C_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6068861.1"
                     /translation="MRPFCVGATVLAILGALVFFISPGVVVLHRQIFLELMLPAAYGG
                     FLTAALLDWTGFSGNLKPATTLMAVLLLVAAVLLPFLPQLAAFFVAAYWLVLLLFCAW
                     LIWLARNTDNFALLMLLAAFTVFQTAYAATGDLNLLRAQVHLNMAAVMFVSIRVSVLL
                     GAEALKECRLKDPVFIPNIVYKNIAITFLLLHTAAELWLPAQTAGFTALAVGFILLAK
                     LRELHHHELLRKHYVRTYYLLQLFAAAGYLWTGAAKLQNLPASAPLHLITLGDMMGGV
                     MMVWLTAGLWHSGFTKLDYPKLCRIAVPILFAAAVSRAFLMNVNPIFFITVPAILTAA
                     VFVLYLFTFIPIFRANAFTDDPE"
     gene            complement(9976..>10636)
                     /locus_tag="ACFM5C_001155"
     CDS             complement(9976..>10636)
                     /locus_tag="ACFM5C_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6068862.1"
                     /translation="AFFAQMTAQKEDSQTMPYQPPTEAEEVLEALVNRRNQPADMRTA
                     EKNRLHQVHETQVGSVKQLIAHFDRLIDESDKQIDDHTRTHFDGKAQVAEQIKGIGSI
                     TTATLMAMLPELGRLSHKRIASLAGIAPHPRESGETKFKSRCFGGRSTVRKALYMATV
                     AATRFEPLIRDFHQRPLSEGKPYKVAVTACMRKLLTISNARMRDYFAENDTAENGIRT
                     A"
BASE COUNT         2442 a         2788 c         3072 g         2334 t
ORIGIN      
        1 ccgccttgtc ctgatttttg ttaatccact ataatgacgt gttgcgataa gggttttcag
       61 acggtatttc aaacagaaca gattaaaatc aaatccaaat ccataaaaaa tgccgtctga
      121 acagcgttca gacggcattt cgatgtgtat cgccacgtca aatcagtggt ggtggccgca
      181 gccgcattct tttttcatat cgattaccat acgaccggtg attttgcctt cgcgcatttc
      241 ttggaaaatg gcgggtgctt catccaaagc acgcagttgg actttcggca caaccaaacc
      301 ttccgcgccg aattggaagg cttcttccaa atctttgcgc gtgccgacca aagagccgac
      361 cacttcgatg ccgtccaaaa ccaaacgcgg gatggacaaa tccatcgatt ccggcggcag
      421 tccgatggca accacacgtc cgcccgcgcg gacgcaattc acggcagagt tgaatgcggc
      481 agcagatacg gcggttacga ccgcagcgtg tgcgccgcct gttttttcct gaatcacttt
      541 ggcagcgtcc tctttggcgg cgttgacaac caaatccgcg ccggtttctt tggcaaacgc
      601 cagtttgtcg tcgttgatgt cgatggcgac aacgtgcgcg ccgaatactt ttttcgcgta
      661 ttggaccccc aagttgccca aaccgcctgc gccgtaaatc gcaatccatt gacccggacg
      721 gacaccggaa actttaatcg ctttataagt ggtcacaccg gcacaagtaa tgctcgaagc
      781 ttgcgcagga tccaagcctt cagggacttt gaccgcgtaa tcggcactca cgatacagtg
      841 ggtcgccata ccgccgtcgg cggtgtagcc cgcgttcaat acagagcggc acagggtttc
      901 gcggccggta ttgcagtatt cgcacgagcc gcagctttgg aacagccagg cgatgctgac
      961 gcggtcgccg actttcagat ttttcacacc gtcggcaact tctttaacca aaccgatgcc
     1021 ctcgtgtccc agcacgcggc ccggtttttc gccgtagtcg cctgccgcaa cgtgcaggtc
     1081 ggtgtggcac acgccgcaat attcgacttc gaccaacgcc tcgccgtatt ccaacgggcg
     1141 aacctcgcgt tcgactattt ccacatcgcc cgctacattt ttattcacaa caactgcctg
     1201 cattttcatg attgcgctcc ttagttacgg caaaaaaacc tgtaaacgga atgttgtccg
     1261 atataagggt aagcatacgc ttccgcatct cacaggtcaa gtggtatgtt gttgaaaaat
     1321 atgggttata tgttatacta taacagcttg gaaaggcacg gcatcggggc ggttgccgga
     1381 tgaggggcgg caggtttcaa gtttgaaaaa ccggacggca aacccgtaaa aatgccgtct
     1441 gaagctgtgt ccggacggca tctttacggg tttgcgggct tcggcggagg attagtcgaa
     1501 gccggggcag gattggtttg taccggaagc ggcaatggta ccgccgtcgt tgagcgtaac
     1561 gacgcaggtt tcgccgtcgt tggtcatcgg atcgggggct gcctgaaggg tgaagtggtc
     1621 ggggctgact tcgcttaagg taatcttgaa atattcgttt tgtttcagtt tgtttttgtc
     1681 gtaggttgca aacgtccctt tttggcggta gtaacgttcc atggtctgcg cgttgtgcag
     1741 cagggtcgtc ctgacttccg acaggcggac gcgccggatg taggttttat aggaagggta
     1801 ggtgataagc gtcaggatgc cgaggatggc gacggcaatc atcagctcga gcagcgtaaa
     1861 gcctttttga acgtttttca tagcaatgtg tttccatttg tttgtcggtc gacggcatta
     1921 taacgccgta tcggaaatgg cggaatatgt aaacggattg aaattttcgg gaaagcagat
     1981 tgtataagcc atttaaaaca aatggttatt tttattgtcg gcagtttgcc gccttggatg
     2041 gggcagggac ttgcggtaga atccgcttcc gatttatggg attgacgcat acagagaatt
     2101 gaaaacatgg caaaaatgat gaaatgggcg gctgttgcgg cggtcgcggc ggcagcggtt
     2161 tggggcggat ggtcttatct gaagcccgag ccgcaggctg cttatattac ggaaacggtc
     2221 aggcgcggcg acatcagccg gacggtttct gcaacagggg agatttcgcc gtccaacctg
     2281 gtatcggtcg gcgcgcaggc atcggggcag attaagaaac tttatgtcaa actcgggcaa
     2341 caggttaaaa agggcgattt gattgcggaa atcaattcga cctcgcagac caatacgctc
     2401 aatacggaaa aatccaagtt ggaaacgtat caggcgaagc tggtgtcggc acagattgca
     2461 ttgggcagtg cggagaagaa atataagcgt caggcggcgt tatggaagga aaacgcgact
     2521 tccaaagagg atttggaaag cgcgcaggat gcgtttgccg ccgccaaagc caatgttgcc
     2581 gagctgaagg ctttaatcag acagagcaaa atttccatca ataccgccga gtcggaattg
     2641 ggctacacgc gcattaccgc aacgatggac ggcacggtgg tggcgattct cgtggaagag
     2701 gggcagactg tgaacgcggc gcagtctacg ccgacgattg tccaattggc gaatctggat
     2761 atgatgttga acaaaatgca gattgccgag ggcgatatta ccaaggtgaa ggcggggcag
     2821 gatatttcgt ttacgatttt gtccgaaccg gatacgccga ttaaggcgaa gctcgacagc
     2881 gtcgaccccg ggctgaccac gatgtcgtcg ggcggctaca acagcagtac ggatacggct
     2941 tccaatgcgg tctactatta tgcccgttcg tttgtgccga atccggacgg caaactcgcc
     3001 acggggatga cgacgcagaa tacggttgaa atcgacggcg tgaaaaatgt gctgattatt
     3061 ccgtcgctga ccgtgaaaaa tcgcggcggc aaggcgtttg tgcgcgtgtt gggtgcggac
     3121 ggcaaggcgg cggaacgcga aatccggacc ggtatgagag acagtatgaa taccgaagta
     3181 aaaagcgggt tgaaagaggg ggacaaagtg gtcatctccg aaataaccgc cgccgagcaa
     3241 caggaaagcg gcgaacgcgc cctaggcggc ccgccgcgcc gataaacgaa tatgccgtct
     3301 gaacacggaa acggtttcag acggcatttg ttattgattt acggaatatt atgagcttga
     3361 tcgaatgtaa aaacatcaac cgctatttcg gcagcggcga gaaccgcgtc catattttga
     3421 aagacatcag cctgtcgata gagaagggcg attttgtcgc catcatcggg cagtccggtt
     3481 cgggcaagtc cacgctgatg aacatactcg gctgtttgga taccgccggt tccggttcgt
     3541 accgaatcga cggcatcgaa actgccaaaa tgcagcctga cgagctggcg gcattgcgcc
     3601 gcgaacgctt cggtttcatc ttccaacgct acaacctctt aagctcgctg accgcaaggg
     3661 acaacgtcgc gctgccagcc gtctatatgg gcgcgggcgg caaagagcgt tccgcgcggg
     3721 cggacaaact cttgcaggat ttgggtttgg caagcaaaga gggcaacaag cccggcgaac
     3781 tctcgggcgg acagcagcag cgcgtctcca tcgctcgcgc cctgatgaac ggcggagaaa
     3841 tcatctttgc cgacgagccg accggcgcac tcgataccgc cagcggcaaa aacgtgatgg
     3901 aaatcatccg caggctgcac gaagccgggc ataccgtcat tatggtcacg cacgaccccg
     3961 gcatcgccgc caatgccaac cgcgtcatcg aaatccggga cggcgaaatc atttccgaca
     4021 cctcgaaaaa tcccgaaatc cccgcaagca atgtcgggag gattcgggaa aaagcctcgt
     4081 ggtcgtttta ttacgaccag tttgtcgaag ccttcagaat gtcggtgcaa gcagtattgg
     4141 cgcacaaaat gcgttcgctt ctgacgatgc tcggcatcat catcggcatc gcgtcggtgg
     4201 tttccgtcgt cgcattgggc aacggttcgc agaaaaaaat ccttgaagac atcagttcga
     4261 tagggacgaa caccatcagc atcttcccgg ggcgcggctt cggcgacagg cgcagcggca
     4321 ggattaaaac cctgaccata gacgacgcaa aaatcatcgc caaacaaagc tacgttgctt
     4381 ccgccacgcc catgacttcg agcggcggca cgctgactta ccgcaatacc gacctgaccg
     4441 cttctttgta cggcgtgggc gaacaatatt tcgacgtgcg cggactgaag ctggaaacgg
     4501 ggcggctgtt tgacgaaaac gatgtgaaag aagacgcgca ggtcgtcgtc atcgaccaaa
     4561 atgtcaaaga caaactcttt gcggactcgg atccgttggg taaaaccatt ttgttcagga
     4621 aacgcccctt gaccgtcatc ggcgtgatga aaaaagacga aaacgctttc ggcaattccg
     4681 acgtgctgat gctttggtcg ccctatacga cggtgatgca ccaaatcaca ggcgagagcc
     4741 acaccaactc catcaccgtc aaaatcaaag acaatgccaa tacccaggtt gccgaaaaag
     4801 ggctgaccga tctgctcaaa gcgcggcacg gcacggaaga tttcttcatg aacaacagcg
     4861 acagcatcag gcagatagtc gaaagcacca ccggtacgat gaagctgctg atttcctcca
     4921 tcgccctgat ttcattggta gtcggcggca tcggcgtgat gaacatcatg ctggtgtccg
     4981 ttaccgagcg caccaaagaa atcggcatac ggatggcaat cggcgcgcgg cgcggcaata
     5041 ttttgcagca gtttttgatt gaggcggtgt taatctgcgt catcggcggt ttggtcggcg
     5101 tgggtttgtc cgccgccgtc agcctcgtgt tcaatcattt tgtaaccgac ttcccgatgg
     5161 acatttcggc ggcatccgtt atcggggcgg tcgcctgctc gaccggaatc ggcatcgcgt
     5221 tcggctttat gcctgccaat aaagcagcca aactcaatcc gatagacgca ttggcgcagg
     5281 attgaggttg gcacaaagat gccgtttgaa gctgccggac cggtcatttt ggagcagaaa
     5341 cttatcggac aaaacggttt cttagattct acgttctaga ttcccacttg cgtgggaatg
     5401 acggcggcgg gggttcgatg attgcacaca acgctcgagt cccgtcattc ccgtaaagac
     5461 gggaattcgg ttcgttcggc tttgcttgtt tcggataaat cacggtaact caatattcca
     5521 gattcccgcc cgcgtgggaa cggcggcggg gcttcgtatt gttcaattta ttattttcaa
     5581 tcattcaatg ggttaggatg tgtttgttgg cttgctaact ttcagggcgg attggttttc
     5641 aggcggcatt tcccgcaaaa aaggcttgga attttccaag ccttttttgc ggatggatta
     5701 ttgatttttg cggatgattt cctccagttg gggcatcggg ctgtagccgc tttggctgcg
     5761 cccgttgggg aagacgaggg tcggcgtgcc gttgaagccg aattgttcgc ccaaggaagt
     5821 ggtttccgcg acgggattgt cgcagatgct gccgccgacc gggaatttgc ctttacgcat
     5881 ccaatccgtc cacgctttgg cgcggtcggg ctgacaccat aagatttgcg ccttgcgcgc
     5941 ggcatcaggg tgcaggccgg caatgggcat cataaagctg taaaccgtca cgtcggtcat
     6001 tttttcaaac tcgtgttcca agcgtttgca gaacggacaa tcggggtcgg aaaagacggc
     6061 gactttcagc ttgccgttgc cgcgcacttc tttgatggct ttgtccaaag gcagggaggc
     6121 gaagtcgatt ttgttcaaat cggcggcgcg ttcttcggtc aggtttttgc gcgtgtcgat
     6181 gttgatgagt tcgccgacga acatatagcc gccttcggca tcggtgtaga taatctgtct
     6241 gccgctgacg acgacttcgt aaatgccttt gaccggtgtt tcgctaacgc tcaacacttt
     6301 caaatcttgg gcggaatagg ttttttccaa acgcgctttc aaagaggcgg caacggattt
     6361 gccggcggac tcggctttgg cggcgggttc ggcgttggca ttggaaacgg gcgtttgccc
     6421 gcaagccagc agcgggagga cggtaaaggg ggtcaagatt ttgattaact tggttttcat
     6481 ataaagatga ttgcgcgtgt tggaaaggcg gaattgtatc aaatctctgt tgcgcctgca
     6541 ttgcgcctag gctcaattta tcgtctgaaa atagcttccg cctgttaaaa tacgcaaaaa
     6601 aatgatttgc ctgcctgtat gatctaccac cgcatcgccg taaacgtgcc gctttcagac
     6661 ggccttttga cttattccca ttccgatccg cttcctccgg gaacgcgggt gcttgtgcct
     6721 ttccgcaata aaaccgtggt cgggatggtg tgggaaacgg atattgcgcc ggatatggat
     6781 acggcgcgga ttttgagtat tcagacgacc tttttagacg agccgccgtt gcctgaaagc
     6841 tggcgtgatt tgctctcgtt tacgtcgcgt tattaccact atccgacggg gcaggcggtg
     6901 tttgccgcgc tgccgcaggg tttgaaggaa acgcgcgcgg tggaaatgcc gcagccgccg
     6961 ttgttttatg cgttgaacga agcgggcagg gcacaaacgc cgccgccggc tcggttcaac
     7021 aaaaaagcgg ctttgtggga cgcgctgctg tcgggcgaaa tgacgatggc agcgttgaag
     7081 caggtaaacg cgcaggcggc gaaattgatt gaagattggg cggtgcaggg ttggattgaa
     7141 acgacggaag cggcgaaacc cgttttaagg ccgtaccacg ggcaggcttc gcactctgaa
     7201 tttgtgttga atgccaacca gcagaaagct tccgatgcca ttcagacggc ctttggcagc
     7261 ttccaaccgt ttctgctgta tggcatcacc ggcagcggca agaccgaggt gtatttcgat
     7321 gcgatggcga aagtgttggc gcaggggcgg caggtgttgt ttctgttgcc cgaaatcaac
     7381 ctcacgccgc agcttttgaa gcgggtggaa aaccgttttg ccgacgtgcc gaccgccgtg
     7441 ttgcacagtc agatggcggc aggcaagcgc acgcaggatt atttgcgcgc gatgttgggg
     7501 caggcgaaat tggtcatcgg cacgcggctg gcggtgttca cgccgatgga tgatgtcggg
     7561 ctgattgtgg tcgatgagga acacgacggc tcgttcaaac aggacaacga attgcgctac
     7621 cacgcccgcg atttggcggt gtggcgggcg aagcagggcg gctgcccgat catattgggc
     7681 agtgccaccc ccagcttgga gagctggcac aaggcgcaaa gcggcgcgta ccgcctgctg
     7741 caactgaccg aacgcgccca taccgccgcg caactgccgc aagtggacat cctcaacgta
     7801 ggccgtctga aacttgacaa cggcttctcg ccgcaagcct tgcagctttt gaaacagaac
     7861 tttgaagcag gtggcatgtc gttggtgtac ctcaaccgtc gcggcttcgc gcccgcgctg
     7921 ttttgcggcg actgcggtta taccttcggc tgcccgaact gctccgccaa aatggtgctg
     7981 caccaacgcg cccgccaact gcgctgccac cactgcgacc accgcgaacc catcccgtac
     8041 aaatgccccg actgcggcaa ccaagacctg accgccgtcg gccacggcac gcagcgcgtc
     8101 gaagaaaccc tgcgcacctt cctgcccaag gcagccgtcg tccgtgttga cagggacagc
     8161 accgcgcaca aaaacgactg ggcggatttg taccgccgca tcgccgacaa caaaatcgac
     8221 attttggtcg gcacgcagat gctcgccaaa gggcatgatt tcgcgcggct caacctcgtt
     8281 atcgtgttga acgctgacgg cagcctgtac agcgcggact ttcgcgcccc ggaaaggctg
     8341 ttcgccgagc tgatgcaggt gtccggcagg gcggggcgcg ccgacaaacc cggcaaggtg
     8401 ttgatacaga cccaactgcc cgaacatccc gtcttcgccg ccgtcaaagc gcaggactac
     8461 gccgtgtttg ccgaaaacga attgaacgag cggcaaatgt tcgccatgcc gcccttcggt
     8521 ttccagaccg ccgtccgcgc cgacgcgccg cgcgttgccg atgcgatgga gtttctcaat
     8581 gccgccaaag aaaccctcgc cccgcttttg cccgaaagcg tttcacagtt cggcgccgcc
     8641 ccgatgctga tggtgcgcct cgccgaacgc gaacgcgcgc aaatcttcct cgaatctccg
     8701 tcccgacagg atttgcaccg tgccgtgagt ttgtgggcgc aggtgttgca gcaaaaccgc
     8761 gacggcaaaa tcagatggtc ggtggatgtc gatccgcagg aggcttgatt attggcaatc
     8821 cgatgccgtc tgaaaaccgt ttcagacggc atttttattc cggatcgtct gtaaacgcat
     8881 tcgcccgaaa tatcggtata aacgtgaaaa gatacagtac gaatacggcg gcggtcagaa
     8941 tcgcaggaac ggtaatgaaa aatatcgggt tcacgttcat caagaaagcg cgcgagacgg
     9001 cggcggcgaa aaggatgggg acggcaatgc ggcagagttt ggggtagtcg agtttggtaa
     9061 agccgctgtg ccacagtccg gcggtcagcc acaccatcat cacgccgccc atcatgtcgc
     9121 cgagggtaat caggtgcagg ggcgcggagg cgggcaggtt ttgtaatttc gccgcgcctg
     9181 tccacaaata gcctgcggcg gcaaagagtt ggagcaggta ataagtgcgg acgtagtgtt
     9241 tgcgcaggag ttcgtgatgg tgcagttcgc gcagtttggc aagcaggata aagccgacgg
     9301 cgagcgcggt aaaaccggcg gtctgcgcgg gcagccaaag ttcggcggcg gtgtgcagca
     9361 gcaggaaggt gatggcgatg tttttataga cgatgttggg gatgaatacg gggtctttca
     9421 gacggcattc tttaagggct tccgcgccca gcaaaacact cacacgtatg gaaacaaaca
     9481 tcaccgcagc catatttaaa tgcacttgcg cgcgcaacag gttcaagtcg ccggttgccg
     9541 cgtatgccgt ctgaaaaacg gtgaacgcgg caagcagcat cagcagggcg aagttatccg
     9601 tgttgcgggc cagccaaatc aaccaagcgc agaacagcaa taaaaccagc caataagccg
     9661 ctacaaagaa tgcggcaagt tgcggtaaaa acggcaataa aacagccgca acaagcaaca
     9721 acaccgccat caaagtagtg gcaggtttca ggttgcccga aaaacccgtc cagtccaaca
     9781 aagccgcagt caggaaacca ccatatgctg caggcagcat gagttctaag aagatttggc
     9841 ggtgcaggac gacgacaccg gggctgatga aaaacaccaa cgcgccgagt atggcaagca
     9901 ctgtcgcgcc gacgcaaaac gggcgcatag caacagtatt tttcaccccg tcgggcaaaa
     9961 ataccaaaac tcaaatcaag ccgtccggat accgttttcg gcggtatcgt tttcggcaaa
    10021 ataatcacgc atccgggcat tcgatatcgt cagcagtttg cgcatacatg ccgtaacggc
    10081 aaccttatac ggcttaccct cggacagcgg gcgttggtgg aaatcccgaa taagcggttc
    10141 aaaacgtgtc gctgccacgg tagccatata cagtgcctta cgcaccgtag accttccgcc
    10201 aaagcagcgg cttttgaatt tggtttcccc gctctctctc gggtgcgggg caatgccggc
    10261 caaactcgct atccgtttgt gcgacagccg ccccaattcg ggcagcatcg ccatcagcgt
    10321 agccgtcgtt atcgaaccga tgcctttgat ttgctctgcc acttgggctt tgccgtcaaa
    10381 atgcgtgcgg gtgtggtcgt cgatttgttt gtccgattcg tcaatcagcc ggtcaaaatg
    10441 ggcaatcagt tgtttgacgc ttccgacttg cgtttcgtga acctgatgca gacggttttt
    10501 ctcggcagtc cgcatatccg ccggttggtt gcggcggtta accaaggctt ccaacacttc
    10561 ttccgcttcg gtgggcggtt ggtagggcat ggtttgcgaa tcttctttct gtgccgtcat
    10621 ctgtgcgaag aaggcg
//
LOCUS       DAXHNP010000063        10519 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.063, whole genome shotgun sequence.
ACCESSION   DAXHNP010000063 DAXHNP010000000
VERSION     DAXHNP010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10519
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.063"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(191..2599)
                     /locus_tag="ACFM5C_001156"
     CDS             complement(191..2599)
                     /locus_tag="ACFM5C_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFC6068863.1"
                     /translation="MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRS
                     VSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVQGSGEASIPEDYTRIVADKVEGQSQ
                     VQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQ
                     QTGEAHNVRMEIEQGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASV
                     EADREKGIGVAKHAAFVFGGVPLFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVP
                     YYFNLAPNLDATFAPGVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQ
                     AKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGG
                     SLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSR
                     QDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVNRTLPIVNIDS
                     GATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYY
                     GNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRS
                     DWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKI
                     YLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEVLAGAEYKSSCGC
                     WGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGR
                     NKRP"
     gene            2669..3673
                     /gene="amgK"
                     /locus_tag="ACFM5C_001157"
     CDS             2669..3673
                     /gene="amgK"
                     /locus_tag="ACFM5C_001157"
                     /EC_number="2.7.1.221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate/N-acetylglucosamine kinase
                     AmgK"
                     /protein_id="HFC6068864.1"
                     /translation="MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSS
                     VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDFGNTTFLTAMLQE
                     QGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELT
                     FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
                     LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
                     GIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
                     "
     gene            complement(3730..4428)
                     /locus_tag="ACFM5C_001158"
     CDS             complement(3730..4428)
                     /locus_tag="ACFM5C_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6068865.1"
                     /translation="MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGL
                     VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH
                     VVWQKEMLPLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
                     FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTID
                     LLADKVREEQKAAQ"
     gene            4455..4646
                     /locus_tag="ACFM5C_001159"
     CDS             4455..4646
                     /locus_tag="ACFM5C_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068866.1"
                     /translation="MLEINRNPAILLHFRVLIQFAAGKGRFRFGKPLQTASNPMPSEA
                     VSVVQYAPLPQTGTTVEEQ"
     gene            4646..6184
                     /gene="murJ"
                     /locus_tag="ACFM5C_001160"
     CDS             4646..6184
                     /gene="murJ"
                     /locus_tag="ACFM5C_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFC6068867.1"
                     /translation="MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVA
                     FKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALG
                     ILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIP
                     AFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPK
                     LNFKDAAVNRVMKQMAPAILGVSVAQISLVINTIFASYLQSGSVSWMYYADRMMELPG
                     GVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVA
                     TLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLI
                     CTQLMNLAFIGPLKHAGLSLAIGLGACINAGLLFFLLRRHGIYQPGKGWAAFLAKMLL
                     SLAVMGGGLYAAQIWLPFDWAHAGGMQKAARLFILIAVGGGLYFASLAALGFRPRHFK
                     RVES"
     gene            6316..7272
                     /locus_tag="ACFM5C_001161"
     CDS             6316..7272
                     /locus_tag="ACFM5C_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheT family hydrolase"
                     /protein_id="HFC6068868.1"
                     /translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPTYRRELLPDSTGKT
                     KVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRSRGWHGAVVHFRSCGGIA
                     NTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGERGENALPQAAA
                     AVSAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKARSLQGFQTAFAAGCKTLGEFDD
                     RFTAPLHGFADRHDYYRRTSCKPLLKHVAKPLLLLNAVNDPFLPPEALPTPDEVSEAV
                     TLFQPAHGGHVGFVGSTGGRLHLQWLPQTVLSYFDSFRTNSR"
     gene            7323..8105
                     /gene="trpC"
                     /locus_tag="ACFM5C_001162"
     CDS             7323..8105
                     /gene="trpC"
                     /locus_tag="ACFM5C_001162"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFC6068869.1"
                     /translation="MTDILNKILATKAQEVAAQKAAVNTEHIRALAAEAAPVRSFIDS
                     IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQG
                     SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVA
                     HELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
                     TESGITGKADVEFMQSRGVHTFLIGETFMRAGDIEAEVGKLF"
     gene            8170..10470
                     /gene="recQ"
                     /locus_tag="ACFM5C_001163"
     CDS             8170..10470
                     /gene="recQ"
                     /locus_tag="ACFM5C_001163"
                     /EC_number="5.6.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HFC6068870.1"
                     /translation="MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGG
                     GKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSSTSADGAREIAD
                     KLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGM
                     LAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFISSFDRPNIYYQVIEKNNGKK
                     QLLEFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRF
                     TREDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAVSWLCY
                     GLNDWVLLHERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCG
                     HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNLLRGKSDDWIRGNRHEQLS
                     TFGIGTELSNKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLK
                     RDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
                     QDLNGLHDIYGLGEAKIDRFGHGILEVCRNAADFSHDAVIRPQTEREQQLRQKLEAWR
                     YEQARAENCALHAVLSDESLADMLAATPETETDLEGVHGLGSVRAAKYGRDILAVCRP
                     FSDGIDEAAKHKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
                     AVYGVGEEKAARYGAAVLAVLERNAV"
BASE COUNT         2158 a         2991 c         3008 g         2362 t
ORIGIN      
        1 gatgcggttt ttgccttttg cggtgcggcg tggacatcgg ctgctgccag caatgcggcg
       61 gcaatcatca gggctttgat tttcatcatt ctttccttat cgtttgaatc ctacctttga
      121 tggcgggttt ggggttgtcg gtggaatgcc gtcttgttcg ggaacggtgc tcctgccggg
      181 tttccgacgg tcagggtcgt ttgttgcgtc cggcggaaag agagtgagcg gggatatagc
      241 cgggaacggc gacatccatc ctgtctgcgg ggtttctgcc gacactgctg aggtctttca
      301 actgaagtga gaaaaagaca gcgtttttgt aggtgttttc gccggtaacg tagcgttggg
      361 cgtacacgcc cgcgccccag cagccgcaac tgcttttgta ttccgcaccc gccagcacct
      421 ctatcggttt tttggcttca aaaccgtagt tgtaacggac gacggccgac aggttgcgcg
      481 tcagcggcca ttgtgcggac aggtcgagct ggctgagttt gtcgtaaaaa taggaaccgt
      541 cggacttcag gtagattttt tcgttgcgcc cgtatttgta gcgggcgttc agcactttgc
      601 cctgtgcggg acggtagctt gcaccgacgg cgtagttctc ggcgcgtttg tcgttttggt
      661 tgtagtggat gctgctgtcg aggatgaagc ggctgccgat gctgccggag gcaaatgcca
      721 cccagtcgga acggttgcgc ggttttttgc cgacgctgcc gtcaagcatc accgcatcat
      781 ccttgaaata gaatttctga ccgatgccgg cgcggaaacg ctcttccccc gtcgcgccgt
      841 ccaaaatacg gctttgcacg gcggcggaaa ggctgtttgc ggtgttaatc ctgtcgttgc
      901 cgtaatagag gttttcgcga aagagctgcc cgtagccgaa gctgctttcc gacgaatcga
      961 aattgggcag gtcgttttgg gatttggcag gaatatagtt gtagaacagg cgcggctcga
     1021 gggtttgcag gactccgccg ccgaacatcc gcgtattccg ctcaaaagtt gcgccgctgt
     1081 cgatgttgac aatgggcaga gtgcggttga cgcgtcgggc ttcttggctg ccgaagcggt
     1141 tgaggctgta ataggtggcg tgcagtccga gtttgggacg gacgtaaccc cagctgttgc
     1201 tgaaatccca tttgatgtcg ggatagacga cgaggcggct gccgtcttgg cggctgtcgt
     1261 ggctgaagcg ggtaaattgt gcggacacgc cgatttgcgc cctgccggtg tttttgcgcc
     1321 aatcggcgga aaggcgcggc atcagggcat acggtttgtc tttgtagccg ctttggtttg
     1381 ccagcgtctg gtatttcaga accgaaaggc cggcattcag gctgccgccc gccgccctgc
     1441 cgccataatc cagccataca cggcggttga ggttgacgtt gccggcgatt tctttgttgc
     1501 cgtaaaagtc gcggtagtag ccgctgtcgg agacttggtt gaaatcgaca cccgcctgaa
     1561 gcgtgtcgga aatgtcgtgc cgatgctgcc atttcgcctg atagcggtta ttcctgccgc
     1621 tttttttgtc gtgcggcagc caggtcaggt cggactggcc ggcataatcc ggccgcaggt
     1681 agcgtacctg cccgtcaaag accgcgccgc gttcgccgat cacgccgggc gcgaacgtgg
     1741 catcgagatt gggggcaagg ttgaaataat agggaacgga aagggaaacg ccgtccgaac
     1801 cggcggacag tgagggaaca agcaggccgc ttttgcggtt gccgtcaagc gggaagtccg
     1861 cccaaggcgt atagaaaagg ggaacgccgc cgaacacgaa ggcggcgtgt ttggcaacgc
     1921 ctatgccttt ttcccgatcg gcttcgacag aggctgcctt gacataccag ccggcatcgc
     1981 cggcggaaca ggtgttgaat tgggtttccg tcagtttgta atgcccttcg cccaacattt
     2041 cggcggtgcg gctgacgctt tgcagccgcc gtccgccttg ttcgatttcc atgcggacgt
     2101 tgtgcgcttc gccggtctgc tgctcgagat tgtaggtcag ggtttcgccc cgaatcagcg
     2161 taccgtcctg ttggagggcg aaccggtcgc ctgcggtaac ggtgtcgccc gactggtcgt
     2221 aatccgccca atcggtattg agggtcgtcc ggttgcgttc gacgacgacg ttgccttcgg
     2281 cacgcacctg cacctgcgac tgtccttcca ccttgtcggc aacaatgcgc gtatagtctt
     2341 cggggatgga tgcttcgccg ctgccttgga cggcggcttc ggttctctcg gggctgccgc
     2401 tttcgttact gcaaaacagg caggtcgaac cgaggctcag gctggtaggc tgtatgggtt
     2461 cggacacgct ccgaacgctt cctccggcgg tcggattgtc cgtttcctcc gccgcaacgg
     2521 catcggcggc ggcgcaatgc gtgccgaagc agaggcccaa tgccagcacc agtggtttga
     2581 gtgaaaataa acgagccaaa atcgcccctc aagtcggttt gccagttaga atagcgttta
     2641 ttgtaacctg aaatgcttta gtactgttat gcaacgacaa atcaaactga aaaattggct
     2701 tcagaccgtt tatcccgaac gggacttcga tctgactttt gcggcggcgg atgctgattt
     2761 ccgccgctat ttccgtgcaa cgttttcaga cggcagcagt gtcgtctgca tggatgcacc
     2821 gcccgacaag atgagtgtcg caccttattt gaaagtgcag aaactgtttg acatggtcaa
     2881 tgtgccgcag gtattgcacg cggacacgga tctggggttt gtggtattga acgactttgg
     2941 caatacgacg tttttgaccg caatgcttca ggaacagggc gaaacggcgc acaaagccct
     3001 gcttttggag gcaatcggcg agttggtcga attgcagaag gcgagccgtg aaggggtttt
     3061 gcccgaatat gaccgtgaaa cgatgttgcg cgaaatcaac ctgttcccgg aatggtttgt
     3121 cgcaaaagaa ttggggcgcg aattaacatt caaacaacgc caactttggc agcaaaccgt
     3181 cgatacgctg ctgccgcccc tgttggcgca gcccaaagtc tatgtgcacc gcgactttat
     3241 cgtccgcaac ctgatgctga cgcgcggcag gccgggcgtt ttagacttcc aagacgcgct
     3301 ttacggcccg atttcctacg atttggtgtc gctgttgcgc gatgccttta tcgaatggga
     3361 agaagaattt gtcttggact tggttatccg ctactgggaa aaggcgcggg ctgccggctt
     3421 gcccgtcccc gaagcgtttg acgagtttta ccgctggttc gaatggatgg gcgtgcagcg
     3481 gcacttgaag gttgcaggca tcttcgcacg cctgtactac cgcgacggca aagacaaata
     3541 ccgtccggaa atcccgcgtt tcctcaatta cctgcgccgc gtatcgcgcc gttatgccga
     3601 actcgccccg ctctacgcgc tcttggtcga actggtcggc gatgaagaac tggaaacggg
     3661 ctttacgttt taaacccaat caaaatgccg tctgaaaacc aagtttcaga cggcattttt
     3721 caaacgggct tactgcgcgg ctttttgttc ttcgcgtact ttgtccgcca aaaggtcgat
     3781 ggtgttcata ccggactccc agtcggcaaa ttcaacttta tatttaccgc cgacgataac
     3841 cgtgggcgta ccgtcgattt ggaaggtttc ggtcagctcc tgcattttgt cggcgcgcgc
     3901 ctggctttcg ggggactcgt aggcggcaag gacttttttg ccgtcaaagg cggtttgttc
     3961 gcccagccat tttttgagga cttccggctc ttgcagcttg attttttggt tgaccatcgc
     4021 atcgaaaata tggctgttcg ccacatcttt gctgtcggcg gcagccatat cgacggcggc
     4081 ggcgaggcgt gccagcggca gcatttcttt ttgccaaacg acatgctcgg tacgcaggta
     4141 catatcgtct ttaaaagact tggcgtgttt gctcaaaaca ggttcgaggt gggcgcagtg
     4201 cggacagaaa tagccgaaaa actcaaggac ttcgactttg cctgcctgct gttggggaat
     4261 cgggttggca aggacggtat agttttgccc ttcgaccagc cctgccgggg cggcggctgc
     4321 cgaagcggca ggcgcgctgt cggcggggac gctggtttgg actttgctgt cgcacgcggc
     4381 aagggcgaac agggcggcaa cgccgagggc gagttgtctg gatttcatac ggctctccgt
     4441 gatgttggaa acagatgttg gaaatcaatc ggaatccggc tattttattg catttccgcg
     4501 tgttgataca gtttgccgcc ggaaaaggac gttttcgttt cgggaaaccg cttcagacgg
     4561 catcaaaccc gatgccgtct gaagcggttt ctgtcgtaca atacgcgccg ttgccccaaa
     4621 cgggtacgac tgttgaggaa caatgatgaa tatgctggga gctttggcaa aagtcggcag
     4681 cctgacgatg gtgtcgcgcg ttttgggatt tgtgcgcgat acggtcattg cgcgcgcatt
     4741 cggcgcgggc atggcgacgg atgcgttttt tgtcgcgttc aaactgccca acctgcttcg
     4801 ccgcgtgttt gcggaggggg cgtttgccca agcgtttgtg ccgattttgg cggaatataa
     4861 ggaaacgcgt tcgaaagagg cgacggaggc ttttatccgc catgtggcgg ggatgctgtc
     4921 gtttgtgctg gtcatcgtta ccgcgctggg catacttgcc gcgccttggg tgatttatgt
     4981 ttccgcaccc ggttttgcca aagatgccga caaatttcag ctctccatcg atttgctgcg
     5041 gattacgttc ccctatatct tattgatttc actttcctct tttgtcggct cggtactcaa
     5101 ttcctatcat aaattcagca ttccggcgtt tacgcccacg ttcctgaacg tgtcgtttat
     5161 cgtattcgcg ctgtttttcg tgccgtattt cgatcctccc gttaccgcgc tggcttgggc
     5221 ggtttttgtc ggcggcattt tacaactcgg cttccaactg ccctggctgg cgaaactggg
     5281 ttttttgaaa ctgcccaaac tgaatttcaa agatgcggcg gtcaaccgcg tcatgaaaca
     5341 gatggcgcct gcgattttgg gcgtgagcgt ggcgcagatt tctttggtga tcaacacgat
     5401 tttcgcgtct tatctgcaat cgggcagcgt ttcatggatg tattacgccg accgcatgat
     5461 ggagctgccc ggcggcgtgc tgggggcggc actcggtacg attttgctgc cgactttgtc
     5521 caaacactcg gcaaaccaag atacggaaca gttttccgcc ctgctcgact ggggtttgcg
     5581 cctgtgcatg ctgctgacgc tgccggcggc ggtcggactg gcggtgttgt cgttcccgct
     5641 ggtggcgacg ctgtttatgt accgcgaatt tacgctgttt gacgcgcaga tgacgcaaca
     5701 cgcgctgatt gcctattctt tcggtttaat cggtttaatc atgattaaag tgttggcacc
     5761 cggcttctat gcgcggcaaa acatcaaaac gcccgtcaaa atcgccatct tcacgctcat
     5821 ctgcacgcag ttgatgaacc ttgcctttat cggcccgttg aaacacgccg ggctttcgct
     5881 cgccatcggt ttgggcgcgt gcatcaatgc cggattgttg ttcttcctgt tacgcagaca
     5941 cggtatttac caacctggca agggttgggc agcgttctta gcaaaaatgc tgctctcgct
     6001 cgccgtgatg ggaggcggcc tgtatgccgc ccaaatctgg ctgccgttcg actgggcaca
     6061 cgccggcgga atgcaaaagg ccgcccggct cttcatcctg attgccgtcg gcggcggact
     6121 gtatttcgca tcactggcgg cactgggctt ccgtccgcgc catttcaaac gcgtggaaag
     6181 ctgaccgatg ccgatatcct ttttcggcaa acgcttttcc acgcctatat tcgggcgcgc
     6241 atcccccacg tccgcaccag ccggacgggc tgccgcatca tcaatgccgt ctgaaaacaa
     6301 gaaaaccgat accttatgat tttaacaccg ccggacacgc cctttttcct ccgcaacggc
     6361 aatgccgaca cgattgccgc caaattcctg caacgccccg cacccacata ccgccgcgag
     6421 ctgcttcccg acagcacggg taaaaccaaa gtcgcctacg atttttcaga cggcatttcg
     6481 cccgatgcgc cgctggtcgt gctgtttcac ggtttggaag gaagcagccg cagccattac
     6541 gcggtcgaac tgatgctcgc ggtacgcagc cgcggttggc acggcgcagt cgtccatttc
     6601 cgcagctgcg gcggcattgc caacaccgct ccggtgttct accacttggg cgataccgcc
     6661 gaaatcgcct ttactttgga cacgcttgcc gcgcgttacc gtgaaatata cgccgtcggc
     6721 gtatcgctgg gcggcaacgc gctggcaaaa tatttgggcg aacggggcga aaacgcgctg
     6781 ccgcaagccg ctgccgccgt atccgccccc gtcgatgcag aggcggcagg cagacgcttc
     6841 gacagcggca tcacgcggct gctctacacg cgctacttcc tccgcaccct gatacccaaa
     6901 gcacggtcgc tccaaggttt tcagacggca tttgccgcag ggtgcaaaac actgggcgag
     6961 tttgacgacc gtttcaccgc accgctgcac ggctttgccg accggcacga ctactaccgc
     7021 cgaacttcct gcaaaccgct gctcaaacac gttgccaaac cgctgctcct gctcaatgcc
     7081 gtcaacgacc ccttcctgcc gcccgaagcg ttgccgacac cggacgaagt gtccgaagcc
     7141 gttaccctgt tccagccggc acacggtggt catgtcggct ttgtcggcag caccggcggc
     7201 aggctgcacc tgcaatggtt gccgcagacc gtcctgtcct atttcgacag cttccgcaca
     7261 aacagtcgtt aacggtttga tgctaatatt ccccctttcc ctagacgaat acggaacccg
     7321 acatgaccga catcctcaat aaaatccttg ccaccaaagc acaggaagtt gccgcccaaa
     7381 aagccgccgt caacaccgaa cacatccgcg cacttgccgc agaagccgcg cccgtccgca
     7441 gcttcatcga ttcgatacgc ggcaaacacc gcctcaacct gcccgccgtc attgccgaaa
     7501 tcaaaaaagc aagcccgagc aaaggcctga tccgtccgga cttccgaccg gccgagattg
     7561 cacgcgccta tgaaaacgcc ggagcggcgt gtttgtccgt actgaccgac gaaccctatt
     7621 tccaaggttc gcccgaatac ctcaaacagg cgcgcgaagc cgtatcgctg cccgtgctgc
     7681 gcaaagactt catcatcgac gaatatcagg tttatcaggc gcgcgcatgg ggggcggatg
     7741 ccgtcctgct gattgccgca gcactggaac aggaacaatt ggaacgcttt gaagcggtgg
     7801 cgcacgaatt gggcatgacc gtcctgctcg agctgcacga tgaaaccgaa ttggaaaaat
     7861 gccgcaacct gaccacgccg ttgtggggcg taaacaaccg caacctgagg acttttgaag
     7921 tctccctcga ccaaaccctg tcgctgctgc ccgcgctgga aggcaaaacc gtcgtaaccg
     7981 aaagcggcat tacaggcaag gcggatgtgg aatttatgca atcgcgcggt gtgcacacct
     8041 tcctgatcgg cgaaacgttc atgcgtgccg gcgatattga ggcggaagtg ggcaaactct
     8101 tctaaatccc gatttcagac ggcatattgc cgccaaccga ccaacaccct taccgagcac
     8161 ggaaccatca tgcaccgacc gaccgccaaa cagattctgc acgaagtatt tggttatccc
     8221 gaatttcgcg gcaggcagga ggctgtcatc aatactttgg caggcggcgg gagtttgacg
     8281 gtgctgatgc cgacgggcgg cggcaagtct ttgtgttacc agattcccgc gctgatgcgc
     8341 gaaggcgtgg cggttgtcgt atcgccgctg attgcgttga tgaacgacca agtggcaaac
     8401 ctgcacgccg ccggcatcga agcggcggca gtcaacagca gcacatcggc agatggggcg
     8461 cgcgagattg ccgacaagct tgcccaaggc cgtctgaaac tgctttatgt cgcgccggaa
     8521 cgcttggtta ccgaccgctt tttgcgtttt ctcgaccaac aaaccgtcag cctgttcgcc
     8581 attgatgagg cgcattgcgt cagccaatgg ggacacgatt tccgccccga gtaccaacag
     8641 ctcggcatgc ttgccgaacg ctatccgaac gtcccgcgca tcgccctgac cgccaccgcc
     8701 gatgccgcca cgcgcgccga catcaagcat tatctgcact tggacgatgc gcccgaattt
     8761 atctccagct ttgaccgccc gaatatttat tatcaggtta tcgaaaaaaa taatggcaaa
     8821 aaacaactgc ttgaattcat ccgcaaagaa atgacggggc aaagcggcat tgtgtattgc
     8881 ctaagccgca aaaaagtcga agatgtggcg cagtttttgc gtgaaaacgg attaaacgcg
     8941 attccgtatc atgccggttt gagcatggac gtgcgcgagg aaaaccaacg ccgctttacg
     9001 cgtgaagaca atattatcgt ggtggcgacc gtggcgttcg gtatgggcat agacaaaccc
     9061 gacgtgcgct ttgtcgccca tctcgatatg ccccagagtg tcgaacattt ctatcaggaa
     9121 tcggggcgcg ccggacggga cgggctgcct gccgtgagtt ggctgtgtta cggtttgaac
     9181 gattgggtgt tgctgcacga acggattgcc gaaggcaaca gcgacgaggt gcaaaagcaa
     9241 atcgaaatgc aaaaactcga tgccatgctt gccgtctgcg aaaccgccgc ctgccgccgc
     9301 gtactgctgc tcaaacattt cggcgaagca tccgaaccct gcggccattg cgacaactgc
     9361 ctgcatccgc ccgtacggtt tgacggcacg gtgttggtgc aaaaattact cagctgcgtg
     9421 taccgcgccg gacaacgttt tgccgccggt tacatcacca accttttgcg aggtaaaagc
     9481 gacgattgga tacgcggcaa ccggcacgaa caactgtcca cattcggcat cggtacggag
     9541 ttgtccaaca aagaatggcg cagcgtcatc cgccagtgta tcagcctcgg ctacctcacc
     9601 gtcaacatta cccgatatca ggcattgcaa ctgaccgaag ccgccaaaaa agtcctcaaa
     9661 ggcgaaaccg aagtgatgct gcgtccgctc aagcgcgaca agcccgccgc ccgcaccctc
     9721 aaagacaact ggctgcgtac cgaacgcgaa gaacgcctgt ggcaggcatt gcgcgtttgg
     9781 cgtatgaaac aggcagaagc cgaaggcatc cccgcctata tgattttcgg cgacaaaacc
     9841 ctgcgcgacc ttgtcgaaaa aatgccgcaa gacctcaacg gtctgcacga catctacggc
     9901 ttgggcgaag ccaaaatcga ccgtttcgga cacggtatcc tcgaagtctg ccgcaacgcc
     9961 gccgacttta gccacgatgc cgtcatccgt ccgcaaaccg aacgcgaaca acaactgcgt
    10021 caaaaactcg aagcctggcg gtatgaacag gcaagggcgg aaaactgcgc cctgcatgcc
    10081 gtcctctccg acgaaagcct tgccgatatg cttgccgcca cgcccgaaac cgaaaccgac
    10141 ctcgaaggcg tgcacggctt gggcagcgta cgcgccgcca aatacggacg ggacatcctc
    10201 gccgtctgcc gtccgttttc agacggcatc gatgaagccg ccaaacacaa acgccgcctg
    10261 atgcgcgccc tgattcaatg gtgcggcgaa acggcaaaac acgaacagtc cgaaccctac
    10321 cgcattctca gcaaagccgc cctgcgcgcc attgccgcca aacagccgga aggtttggcg
    10381 gagcttgccg ccgtatatgg cgtaggcgaa gaaaaagccg cacgttacgg tgcggcggtg
    10441 ttggcggtat tggaacgaaa tgccgtctga agcccgttac caagtttcag acggcattgc
    10501 ctctatttaa aaattcctg
//
LOCUS       DAXHNP010000064        10502 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.064, whole genome shotgun sequence.
ACCESSION   DAXHNP010000064 DAXHNP010000000
VERSION     DAXHNP010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10502
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.064"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..114
                     /locus_tag="ACFM5C_001164"
     CDS             <1..114
                     /locus_tag="ACFM5C_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6068871.1"
                     /translation="NGIDCKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI"
     gene            complement(147..1238)
                     /gene="mltB"
                     /locus_tag="ACFM5C_001165"
     CDS             complement(147..1238)
                     /gene="mltB"
                     /locus_tag="ACFM5C_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HFC6068872.1"
                     /translation="MKKRKILPLAICLAALSACTAMEARPPRVNEAQAPRADEMKKES
                     RPAFDTAAVPVSDSGFAANANVRRFVDDEVGKGDFSRAEWQDFFDKAAYKADIVKIMH
                     RPSTSRPWYVFRTGNSGKAKFRGARRFYAENRAVVDDVAQKYGVPAELIVAIIGIETN
                     YGKNTGSFRVADALATLGFDYPRRAGFFQKELVELLKLAKEEGGDVFAFKGSYAGAMG
                     MPQFMPSSYRKWAVDYDGDGHRDIWGNVGDVAASVANYMKQHGWRTGGKMLVSATLAP
                     GADVQAIIGEKTALTRTVADLKAYGIIPGEELADDEKAVLFKLETAPGVFEYYLGLNN
                     FYTVWQYNHSRMYVTAVRDIANSLGGPGL"
     gene            complement(1387..2814)
                     /locus_tag="ACFM5C_001166"
     CDS             complement(1387..2814)
                     /locus_tag="ACFM5C_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6068873.1"
                     /translation="MIHTEPSAQPSTMDTAAFLKHIESAFRRIFSDGIDLMRYLPEDK
                     WLALKQAGLLLPFLDKKHGGRKGSQFEIQEVLRIAGHYGVPVTLRTGIEGALVLQPLQ
                     EFGDEAQIAQGLDMVFKGEGGGLGVTEPETSGAAIAREMQSYYEYTDGQTIYVNAAKY
                     WQGNSQSDFLLVAAKERKNGKLAKVIDLLLVPKTYIRCETLASEGLRAVRYAVNRIDA
                     EMPATAVMKLSQSDAAGLRAFQNIFIRSRLQLIGMTHGIMEYILENLERYVRNDIRFV
                     DYERREIRRRHQVSEILYRYVCHSVSPVAPVAHQLMEANIVKTLATEYTYAAAQMLQK
                     LLGAKGFERGHTAGNIAIDIRPFTIFEGPNDMLYAEIYDQFVRATAEEKEAGMKLDKN
                     QTLLDRLQTDARFAAVARDYTLPEDIRSFLQEHTLTDACALQKVFIGKIIARLFVFVQ
                     AEHEDTAAFLLNDIRKDILDCRYCG"
     gene            2999..6682
                     /gene="mfd"
                     /locus_tag="ACFM5C_001167"
     CDS             2999..6682
                     /gene="mfd"
                     /locus_tag="ACFM5C_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HFC6068874.1"
                     /translation="MTYPIPKPREKSRWLNLSQGSLPLALARYLPHRRLKVVLTQDAE
                     QALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLF
                     VPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAGYNHVSHVVAAGEFAVR
                     GGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRLLPAHEFPTDNEA
                     QKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL
                     FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQYLYLSADVFAGRLKNYGQVLP
                     DVSGKEYTLPDLAVNRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGL
                     KAKPVSDWQGFLSAHEPLMITVAPLAYGFKLGGLQSPSQQQAAPASEGEGDAITDQTE
                     FSASATNPLPSPLPQEREQSTAAISDSLKTKSSLYPIENSLHGQIQQQPAPSPVGEGW
                     GEGKAVAAQSAIAVITESDLYQYVARSRIHNRRKKHAAVSDDLLRDLAEINIGDPVVH
                     EEHGIGRYMGLITMNLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENIALH
                     KLGSGAWNKAKRKAAEKARDTAAELLNLYARRAAQSGHKFEINELDYQAFADGFGYEE
                     TEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTT
                     LLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDD
                     IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSL
                     ITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLL
                     PEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKF
                     GLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE
                     IRGAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSP
                     ALLPESYCPDIHERLVLYKRLAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLR
                     LMAKELGINAIDAAGEAVTVTFGKNNNIDPTEIILLIQNDKKYRLAGADKLRFTAEME
                     NIEVRINTVKNVLKTLQNRCLPK"
     gene            6831..7214
                     /gene="panD"
                     /locus_tag="ACFM5C_001168"
     CDS             6831..7214
                     /gene="panD"
                     /locus_tag="ACFM5C_001168"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFC6068875.1"
                     /translation="MFRTMLGGKIHRATVTEADLNYVGSITVDQDLLDAAGIYPNEKV
                     AIVNNNNGERFETYTIAGKRGSGVICLNGAAARLVQKGDIVIIMSYVQLSEPEIAAHE
                     PKVVLVDGNNKIRDIISYEPPHTVL"
     gene            7236..8078
                     /gene="kdsA"
                     /locus_tag="ACFM5C_001169"
     CDS             7236..8078
                     /gene="kdsA"
                     /locus_tag="ACFM5C_001169"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFC6068876.1"
                     /translation="MDIKINDFTLGNNSPFVLFGGINVLESLDSTLQTCAHYVEVTRK
                     LGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPV
                     AEVCDVIQLPAFLARQTDLVAAMAETGNVINIKKPQFLSPSQMKNIVEKFHEAGNGKL
                     ILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQA
                     LDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKALDDLIKSQPI
                     LTIE"
     gene            8093..8533
                     /locus_tag="ACFM5C_001170"
     CDS             8093..8533
                     /locus_tag="ACFM5C_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFC6068877.1"
                     /translation="MMQTFRKISLYAATLWLGMQIMAGYIVAPVLFKMLPKMQAGEIA
                     GVLFDILSWSGLAVWGAVLAAAFAALTRRQTALLLFLLSALAANRFLITPVIEALKYG
                     HENWLLSALGGSFGMWHGISSIVFMAAALLSIYLSWRLYGKNAV"
     gene            8578..9864
                     /gene="eno"
                     /locus_tag="ACFM5C_001171"
     CDS             8578..9864
                     /gene="eno"
                     /locus_tag="ACFM5C_001171"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFC6068878.1"
                     /translation="MSAIVDIFAREILDSRGNPTVECDVLLESGVMGRAAVPSGASTG
                     QKEALELRDGDKSRYLGKGVLKAVDHVNNQIAQALIGIDASEQSYIDQIMIELDGTEN
                     KGNLGANATLAVSMAVARAAAEDAGLPLYRYLGGAGPMSLPVPMMNVINGGEHANNSL
                     NIQEFMIMPVGAKSFREALRCGAEIFHALKKLCDSKGFPTTVGDEGGFAPNLNSHKEA
                     LQLMVEATEAAGYKAGEDVLFALDCASSEFYKDGKYHLEAEGRSYTNAEFAEYLEGLV
                     NEFPIISIEDGMDENDWEGWKLLTEKLGGKVQLVGDDLFVTNPKILAEGIEKGVANAL
                     LVKVNQIGTLSETLKAVDLAKRNRYASVMSHRSGETEDSTIADLAVATNCMQIKTGSL
                     SRSDRMAKYNQLLRIEEELAEAADYPSKAAFYQLGK"
     gene            9878..10156
                     /gene="ftsB"
                     /locus_tag="ACFM5C_001172"
     CDS             9878..10156
                     /gene="ftsB"
                     /locus_tag="ACFM5C_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HFC6068879.1"
                     /translation="MKWVTVVLSFALVCCQYSLWFGKGSIGRNSSLREQIAVQEEKNQ
                     TLALRNHSLAAEVYDLENGQEAISEIARVELGYIQDGETFYRLIRHNR"
     gene            complement(10197..10487)
                     /gene="yfaE"
                     /locus_tag="ACFM5C_001173"
     CDS             complement(10197..10487)
                     /gene="yfaE"
                     /locus_tag="ACFM5C_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I ribonucleotide reductase maintenance
                     protein YfaE"
                     /protein_id="HFC6068880.1"
                     /translation="MARIGTNKGFFELLEGETLLEGLERTGHMVEYQCRSGYCGSCRV
                     KILEGSVTYREPPLAFLGRDEILPCCCCVEGDVRLDCGLSGEDEGLSDSLLK"
BASE COUNT         2512 a         3050 c         2686 g         2254 t
ORIGIN      
        1 aacggaatcg attgcaaatc tttcccactg ttcttgaaag aatgtgaatt tcgatttaac
       61 ttcggcacac cgtctcaaca gcttaaaatc ctgcgggatt ggtgtgggat ttagggctaa
      121 tctagtacag ccccttttaa aaaacattac aatcccgggc cgccaagcga attggcaatg
      181 tccctgaccg ccgttacata catccggctg tggttgtact gccataccgt ataaaaattg
      241 ttcaagccca aataatattc aaacacgccc ggtgcggttt ccagtttgaa caaaaccgcc
      301 ttttcatcat cggcaagctc ttcgccgggg atgatgccgt acgccttcaa atccgccacc
      361 gtccgcgtca gggcggtttt ttcgccaatg attgcctgaa catccgcacc cggcgccaat
      421 gttgcagaca ccagcatttt accgcccgtg cgccaaccgt gctgcttcat ataattggca
      481 accgatgccg cgacatcgcc gacgttgccc catatgtccc gatgtccgtc cccgtcataa
      541 tccaccgccc atttccggta gctcgaaggc ataaattgcg gcatacccat tgcacccgca
      601 tagctgccct taaaggcgaa aacatcgccg ccctcttctt ttgccagctt taaaagctcg
      661 accaattctt tttggaaaaa cccggcgcgg cgggggtaat cgaaacctaa agtcgccaat
      721 gcgtccgcca cgcggaaact gcccgtattt ttgccgtaat tcgtttcaat cccgataatc
      781 gccacgataa gctcggcggg cacgccgtat ttttgcgcca catcatcgac aactgcgcgg
      841 ttttccgcat aaaaccggcg cgcgccgcga aatttcgcct tgcccgaatt tcccgtgcgg
      901 aacacatacc acggacgcga tgtggagggt cggtgcataa tcttgacgat gtccgccttg
      961 taagccgctt tgtcaaaaaa atcctgccat tccgcccggg aaaaatcccc tttcccgact
     1021 tcatcgtcca caaaacggcg gacatttgca ttggcggcaa acccgctgtc ggataccggt
     1081 acggctgccg tgtcaaacgc ggggcggctt tcttttttca tttcatccgc gcggggggct
     1141 tgggcttcat ttacccgggg cgggcgtgcc tccatcgccg tacaggcaga caaagccgcc
     1201 aaacaaattg ccagcggcag tatttttctc tttttcataa atatgttccg aacaaatagg
     1261 gtaagtggga aagcggcgca aggggcgcgg tgcgaaatgc ggcatccgcc gcaatcggcg
     1321 gctttgtgga ataccgcgcg ttgccttttg caccgcctga aatccgtatg ccgccgtatt
     1381 tgcccgctat ccgcaatatc ggcagtccaa tatatctttg cggatgtcgt tcagcaggaa
     1441 ggctgcggtg tcttcgtgtt ccgcctgtac gaagacaaag agtcgggcga tgattttgcc
     1501 gatgaagact ttttgcaggg cgcaggcgtc ggtcagggtg tgttcctgca ggaagctgcg
     1561 gatgtcttcg ggcaaagtgt agtcgcgggc gacggcggca aagcgggcat cggtttgcag
     1621 gcggtcgagc agggtttggt ttttgtccaa cttcatgcct gcttcttttt cttcggcggt
     1681 ggcgcggacg aactggtcgt aaatttcggc ataaagcata tcgttcgggc cttcaaaaat
     1741 cgtgaagggg cggatgtcga tagcgatatt gccggcggtg tgtccgcgtt caaaaccctt
     1801 cgcgcccaaa agtttttgca acatttgcgc ggcggcgtaa gtgtattccg tggcgagggt
     1861 tttgacgatg ttcgcctcca tcagctgatg ggcgacgggg gcaacaggtg aaacggaatg
     1921 gcagacgtag cggtaaagaa tctcggaaac ctgatggcgg cgccggattt cgcggcgttc
     1981 gtaatcgacg aatctgatgt cgttgcggac gtatcgttcc aggttttcaa ggatgtattc
     2041 cataatgccg tgcgtcatgc cgatcagttg caggcggctg cggataaaga tgttttggaa
     2101 cgcgcgcaaa ccggcagcgt cgctctggga gagtttcatc acggcggttg caggcatttc
     2161 ggcatcgatg cggttgacgg cgtaacggac ggcgcgcaag ccttcggatg cgagggtttc
     2221 gcagcggatg tatgttttgg ggacgagcag caggtcgatg actttggcga gtttgccgtt
     2281 tttgcgctct ttggcggcaa cgaggaggaa gtcgctttgc gagttgccct gccagtattt
     2341 cgcggcgttg acgtaaatgg tttgtccgtc ggtatattcg tagtaagact gcatttctcg
     2401 ggcaatcgcc gcgccggagg tttcgggttc ggtaacgccc aaaccaccgc cctcgccttt
     2461 gaaaaccatg tccaaaccct gtgcgatttg cgcttcatcg ccgaactctt gcagtggctg
     2521 caacaccagc gcgccttcga tgccggtacg cagcgtaacg ggcacgccgt aatgccccgc
     2581 aatccgcaag acttcctgaa tttcaaactg gctgcccttg cgcccgccgt gttttttgtc
     2641 gaggaagggc aacagcaaac ccgcctgctt caaggcaagc catttgtctt cgggcaggta
     2701 tcgcatcagg tcgataccgt ctgaaaaaat gcggcggaat gcggattcga tgtgctttaa
     2761 aaaagcagcc gtgtccatag ttgacggctg cgcactcggt tcggtgtgta tcatcggctt
     2821 cctctgtcgg ttcccattaa tcggcggccg gtcaaaccgc ctgccacggt ttagagttaa
     2881 ttttctaaac tttaccacaa agtgcgccgg gcaacaatcc gccgaccttt cagacggcat
     2941 cgcgccccct cccgtgctaa aatgaccgtt tgcatcactg tccgccgatt gccgcactat
     3001 gacctacccc atccccaaac cccgtgaaaa atcccgttgg ctcaatctgt ctcaaggctc
     3061 gctacccttg gctttggcgc gttatctgcc gcataggcgg ctcaaagtcg tgctgaccca
     3121 agatgcggaa caggcgctac gccttcagac ggcgtggcgg tttttccgtc cgcacgatac
     3181 ggcggtgttc ctgccggact gggaaacgct gccttacgag cgtttttcgc cgcatcagga
     3241 tttggtgtcg gagcgtttgt cggcgttgtg gcagattaaa agcggcgcgg cggacgtgtt
     3301 gttcgtgccg gttgccacgg cgatgcagaa gctgccgccc gtgccgtttc tggcggggcg
     3361 cacgttttgg ctgaaaacgg gacagacttt ggatataggc cgtctgaaaa gcgatttggt
     3421 ggatgcaggt tataaccatg tttcccacgt tgtcgcggca ggcgagtttg ccgtgcgcgg
     3481 cggcattgtg gatttgttcc cgatgggcag cgaaatgccg taccgcatcg atttgttcga
     3541 cgatgaaatc gacagcatca aaacctttga caccgagacg cagcgcacca tctcccccgt
     3601 ttccgaaatc cgtctgctgc cggcgcacga gttccccacc gacaacgagg cgcaaaaaat
     3661 cttccgcagc cgttttcgcg aggaagtcga tggcaatccg aacgatgccg ctgtgtacaa
     3721 agccgtcagc aacggtcatt tcggcgcggg cgtggaatac tacctgccgc tgttttttga
     3781 aaacgagttg gaaacgctgt ttgactatat cggcgaagat gcgctgtttg tctctttagg
     3841 cgatgttcat gccgaggcaa accgtttttg gagcgatgtc aaatcgcgtt acgcgatggc
     3901 gcagggcgac gaaacctatc cgcctttgct tccacagtat ttgtatctct ctgccgatgt
     3961 gttcgcaggc cgtctgaaaa actacggaca ggtgctgccc gatgtttccg gcaaggaata
     4021 caccctgccc gaccttgccg tcaaccgcca agcagatgag ccgttgcagg cattgaagga
     4081 ttttcagacg gcgtttgacg gacggatttt gctgtgcgcc gaaagtttgg gacggcgcga
     4141 aactatgctc ggtttcttgc agcaaaacgg tttgaaagcc aaacccgtgt ccgactggca
     4201 gggcttttta tcggcacacg agccgctgat gattactgtt gcgccgttgg catacgggtt
     4261 caaactgggc gggctgcaat ctccgagcca acagcaagct gctcccgcct ccgaaggaga
     4321 aggcgatgcg attaccgacc aaaccgaatt ttccgcatcc gcaacaaacc ctctccctag
     4381 ccctctccca caggagaggg aacaaagtac cgccgccatt tcagacagtc tgaaaaccaa
     4441 aagcagcctg taccccatcg aaaatagtct gcacgggcaa atccaacagc aacctgcccc
     4501 ctcccccgtg ggggagggtt ggggagaggg caaagcagtt gccgctcaaa gtgccatcgc
     4561 cgtcatcacc gaatccgatc tctaccaata cgtcgcccgt tcgcgcatcc acaaccgccg
     4621 caagaaacac gccgccgttt cagacgacct gttgcgcgac cttgccgaaa tcaacatcgg
     4681 cgaccccgtc gtgcacgagg aacacggcat cggccgatat atgggcttga taacaatgaa
     4741 cttgggcggc gaaaccaacg aaatgatgtt gctcgaatat gcgggcgaag cgcagcttta
     4801 tgtgcctgtt tcgcaactgc atttaatcag ccgctactcc ggtcaggcgc atgaaaacat
     4861 tgccctgcac aagctcggca gtggcgcgtg gaacaaggcg aagcgcaaag ccgccgaaaa
     4921 ggcgcgcgat accgccgccg agttgcttaa cctttacgcc cgacgtgccg cccaatcggg
     4981 acacaagttt gaaatcaacg agttggatta tcaggcgttt gccgacggct tcggctacga
     5041 agaaaccgaa gaccaggccg ccgccatcgc cgccgtgatt aaagatttga cgcaggcgaa
     5101 gccgatggac cgcctcgtgt gcggcgatgt cggtttcggc aaaaccgaag tcgccctgcg
     5161 cgccgcattt gtggcggtga tgggtggcaa acaggtcgcc gtactcgccc cgaccacgct
     5221 tctggtcgag cagcacgcgc aaaactttgc cgaccgtttc gccgatttcc ctgtgaaagt
     5281 cgccagcctt tcgcgtttca acaacagcaa agccactaaa gccgcgctgg aaggcatggc
     5341 ggacggcacg gtcgacatcg ttatcggcac gcacaaactg gtgcaggacg acatcaaatt
     5401 caaaaactta ggtttagtga ttatcgacga agaacaccgc ttcggtgtcc gccaaaaaga
     5461 gcagctcaaa cgcctgcgcg ccaatgtgga catcctcacc atgaccgcca cgccgattcc
     5521 gcgtacttta agtatggcgt tggaaggact gcgcgacttc tcgctgatta ccaccgcgcc
     5581 cagccgccgc ctcgccgtca aaacctttgt caaacccttt agcgaaggca gcgtgcgcga
     5641 agccgtgttg cgcgaactca aacgcggagg acaggtattt ttcctgcaca atgaagtaga
     5701 tacgattgaa aatatgcgcg agcggctgga aaccctgctg cccgaagccc gcatcggcgt
     5761 ggcgcacgga caactgcgcg agcgcgagct ggaacaagtc atgcgcgact ttttgcagca
     5821 acgatttaac gtgttgctct gctccaccat catcgaaacc ggcatcgaca tccccaacgc
     5881 caacaccatc atcatcaacc gcgccgacaa attcgggctg gcgcaactgc accagcttcg
     5941 cgggcgcgtc ggccgcagcc accatcaagc ctacgcctac ctgctcacgc ccgaatacat
     6001 caccaaagac gcagaaaaac gcctcgacgc catcgcggcg gcagacgaac tcggcgcagg
     6061 tttcaccctc gccatgcagg atttggaaat ccgcggcgca ggcgaaatcc tcggcgaagg
     6121 gcagtccggt gaaatgatgc aggtcggctt cacgctctac accgaaatgc tcaaacaggc
     6181 cgtgcgcgac ctcaaaaaag gccgccaacc cgacctcgat gcaccgttgg gcattaccac
     6241 cgaaatcaaa ctgcacagcc ccgccctgct gcccgaaagc tactgccccg acatccacga
     6301 acggctcgtc ctctacaaac gcctcgccgt ctgcgaaacc gtacagcaaa tcaatgccat
     6361 acacgaagaa ctcgtcgacc gcttcggact gcccgagcaa cccgtcaaaa cccttatcga
     6421 aagccaccac ttacggctta tggcaaaaga attgggtatc aatgccattg atgcggccgg
     6481 cgaagcggta acggtaacct ttggcaaaaa caacaatatt gatccaaccg aaatcatcct
     6541 gctgattcag aacgacaaaa aataccgcct tgccggcgcc gataagctgc ggtttaccgc
     6601 agagatggaa aatatcgagg tcagaatcaa caccgtaaaa aacgttttaa aaaccttgca
     6661 aaacagatgc ctgcccaaat aaagccgaca ccgcaatgct gtctgaaaca ccgttttcct
     6721 tgtccgaaag ccgccattat gaatttgaag gaaactccac tataatacgg cattcagatt
     6781 ttcagacggc atcgcgcccg tcaaaccgca cacaaaccaa aaggaaatac atgttccgta
     6841 ctatgcttgg cggaaaaatc caccgcgcca ccgttaccga agccgattta aactatgtcg
     6901 gcagcattac cgtcgatcaa gacctgttag acgcggcagg catctacccc aacgaaaaag
     6961 tcgccatcgt caacaacaac aacggcgaac gttttgaaac ctataccatt gcagggaaac
     7021 gcggcagcgg cgtgatttgt ctgaacggtg ctgcggcaag gctggtgcag aaaggcgata
     7081 tcgtcatcat catgtcttac gtccaactct ccgaacccga aatcgccgcg catgaaccca
     7141 aagtcgtctt ggtagacgga aacaacaaaa tccgcgacat catctcctat gagccgccgc
     7201 acaccgtgct gtaattccgc aaacggacat cgattatgga tattaaaatc aacgacttca
     7261 ccctcggcaa caactcgccc ttcgtcctat tcggcggcat caacgttttg gaaagcttgg
     7321 attccaccct ccaaacctgt gcgcattacg tcgaagttac ccgaaaactc ggtattccct
     7381 atatctttaa agcctctttc gacaaggcaa accgttcctc catccattct tatcgcggcg
     7441 taggcttgga agaaggctta aagatttttg aaaaagtcaa agcagagttc ggcatccccg
     7501 tcattaccga cgtacacgaa ccccatcagt gccaacccgt cgccgaagtg tgcgatgtca
     7561 tccagcttcc cgcctttctt gcgcggcaga ccgatttggt ggccgcaatg gcggaaacgg
     7621 gcaatgtcat caacatcaaa aaacctcagt tcctcagccc ctctcaaatg aaaaacattg
     7681 tggaaaaatt ccacgaagcc ggcaacggga aactgatttt atgcgaacgc ggcagcagct
     7741 tcggctacga caacctcgtt gtcgatatgc tcggtttcgg cgtgatgaaa cagacttgcg
     7801 gcaacctgcc ggttattttc gacgttaccc attccctgca aacccgcgat gctggttctg
     7861 ccgcatccgg cggtcgtcgc gcacaagctt tggatttggc acttgcaggc atggcaaccc
     7921 gccttgccgg cctgttcctc gaatcgcacc ccgatccgaa actggcaaaa tgcgacggcc
     7981 ccagcgcgct gccgctgcac cttttagaag attttttaat ccgcatcaaa gcattggacg
     8041 atttaatcaa atcacaaccg attttaacaa tcgagtaaca cggtttcgcc ttatgatgca
     8101 gactttccga aaaatcagcc tgtatgccgc aaccttatgg ctcggtatgc agattatggc
     8161 gggttatatc gtcgcgccgg tgctgttcaa aatgctgccc aaaatgcagg cgggcgaaat
     8221 tgccggcgta ttgttcgaca tcctctcttg gagcgggctt gccgtttggg gcgcggtact
     8281 ggctgccgcc tttgccgccc taacccggcg gcaaaccgcc ctgctgcttt ttttattgtc
     8341 cgcccttgcc gccaaccgat tcttgattac acccgttatc gaggcgctga aatacgggca
     8401 tgagaattgg ctgttgtcgg ctttgggcgg atctttcgga atgtggcacg gcatttccag
     8461 tattgttttt atggcggccg ccctactttc gatttactta agttggcggc tctacggcaa
     8521 aaatgccgtc tgaagcctac cgttttacct cacgtcactt taatttggag aatatttatg
     8581 agcgcaatcg ttgatatttt tgcccgcgaa attttggact cacgcggcaa cccaaccgta
     8641 gaatgcgacg tactgttgga atccggcgtc atgggacgcg cagccgtacc aagcggcgca
     8701 tcaaccggtc agaaagaagc tttagaactt cgcgacggcg acaaatcccg ttacttgggc
     8761 aaaggcgtat tgaaagccgt tgaccacgtc aacaaccaaa tcgcgcaagc cctcatcggt
     8821 atcgatgcca gcgaacaatc ttatatcgac caaatcatga tcgaattgga cggtactgaa
     8881 aacaaaggta acttgggtgc caacgcgact ttggccgttt ctatggccgt agcacgcgca
     8941 gccgctgaag atgcagggct gccgctttac cgctacttgg gcggcgcagg tccgatgtcc
     9001 ctgcccgtac cgatgatgaa cgtcatcaac ggcggcgaac acgccaacaa cagcctgaac
     9061 atccaagagt ttatgattat gcccgtcggc gcaaaatctt tccgcgaagc gttgcgctgc
     9121 ggtgcggaaa ttttccacgc cttgaaaaaa ctgtgcgaca gcaaaggctt cccgaccaca
     9181 gtcggcgacg aaggcggttt cgcccccaac ctgaacagcc acaaagaagc cctgcaactg
     9241 atggttgaag ccaccgaagc cgccggctac aaagcgggcg aagacgtatt attcgcattg
     9301 gactgcgcgt ccagcgagtt ctacaaagac ggcaaatacc acttggaagc cgaaggccgc
     9361 tcctacacca acgcggaatt tgccgaatat ctggaaggcc tggtcaacga gttccccatc
     9421 atctccatcg aagacgggat ggatgaaaac gactgggaag gctggaaact gctgaccgaa
     9481 aaactgggcg gcaaagtcca actcgttggc gacgacctct tcgttaccaa cccgaaaatc
     9541 cttgccgaag gcattgaaaa aggcgtggca aacgcactat tggtcaaagt caaccaaatc
     9601 ggtactttga gtgaaaccct gaaagccgtc gacttagcca aacgcaaccg ctacgccagc
     9661 gtaatgagcc accgctccgg cgaaaccgaa gacagcacca ttgccgactt ggcagtcgcc
     9721 accaactgta tgcagatcaa aaccggttct ttgagccgtt ccgaccgcat ggcgaaatac
     9781 aaccaactgc tgcgtatcga ggaagaattg gcggaagccg ccgactaccc cagcaaagcc
     9841 gcattctacc aactgggcaa ataaaaaagg ttaaggtatg aagtgggtaa ctgtcgtttt
     9901 atccttcgca cttgtctgtt gccaatacag cctctggttc ggcaaaggca gcatcggacg
     9961 caacagcagt ctgagagaac agattgccgt tcaagaagaa aaaaaccaga cactcgccct
    10021 acgcaatcat tcccttgccg ccgaagtcta tgatttggaa aacggtcaag aagccatttc
    10081 ggaaatcgcc cgggtagaac tgggttatat ccaagacggt gaaacctttt accgactcat
    10141 caggcataac cggtaatacc gtcaaaaagc cgtccgaacc aatgttcgga cggcttttat
    10201 ttcaacaaac tgtcagacag cccctcatcc tcccccgaca aaccgcaatc cagcctgaca
    10261 tccccctcga cgcaacagca gcacggcagt atctcgtccc gccccaaaaa agccaaaggc
    10321 ggctcccgat aagtaacgct tccctccaaa atcttcactc ggcacgatcc gcaatatccg
    10381 cttcggcact gatattccac catatgcccc gtccgttcca agccttccaa cagggtctcg
    10441 ccctccaaga gctcaaaaaa acccttattc gtaccaatgc gcgccatttc cgaccaatca
    10501 aa
//
LOCUS       DAXHNP010000065        10352 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.065, whole genome shotgun sequence.
ACCESSION   DAXHNP010000065 DAXHNP010000000
VERSION     DAXHNP010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10352
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.065"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..141
                     /locus_tag="ACFM5C_001174"
     CDS             <1..141
                     /locus_tag="ACFM5C_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
                     /protein_id="HFC6068881.1"
                     /translation="VGIGSGALLGHWVTQYVGISRIGIAGMLAAAAGLWLCLNLNRHI
                     RT"
     gene            270..1706
                     /locus_tag="ACFM5C_001175"
     CDS             270..1706
                     /locus_tag="ACFM5C_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFC6068882.1"
                     /translation="MPLLSVEFALFFLAFLPIYWGLAKYPSVQNLLLLAAGMGWLYHI
                     GPVFAAIVVLYSSCVYLLGELLRSDRENTRRFWLGCGIAVSLTVLGFFKYFDFFRPLI
                     AHYAGQGGAIDILMPLGLSYYTFQSLAYLVYCFRAPHAARFEWHELLLHLSFFPTVTS
                     GPIIRAAAFKSADGEQAGALAQIRTRQPRSPVRPALAVSLILLGIAKKWWLAGMLAEN
                     WVSPVFENPAQFDGWGVLGGVYGYTFQLFLDFSGYSDLVIGMAMLLGFRLPKNFSAPL
                     RALNIRAFWDKWHISLSTWIRDYIYIPLGGSKKGFLRTQLNLMAAMVLSGIWHGYGWN
                     FLIWGALHGTALVLLNTGDRYFGRNALCRLKYLAPLSWFVTFHFVCLSFVVFNTASPD
                     DAGAVFNALFANANGWNAPQQANMLLLASFASVMLLYPYLQRAFDGAVKGLEKIPMWL
                     WFIPVSAVLLLIIVLAPSGIPGFIYANF"
     gene            1717..2700
                     /gene="patB"
                     /locus_tag="ACFM5C_001176"
     CDS             1717..2700
                     /gene="patB"
                     /locus_tag="ACFM5C_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase PatB"
                     /protein_id="HFC6068883.1"
                     /translation="MKNFLSLFASILMSALIAVWFSQNPINAYWQQTYHRNSPLEPLA
                     AYGWWRSGAALQENAYTFSDGIKAFLSGETPSTAQGGGSADMPSEAAASEAVPQTGKT
                     EWKQDTEAAAVRSGDKVFFAGDSLMQGVAPFVQKSLKQQYGIESVNLSKQSTGLSYPS
                     FFDWPKTIEETLKKHPEISVLAVFLGPNDPWDFPVGKRYLKFASDEWAQEYLKRVDRI
                     LEAAHTHRVQVVWLGIPYMKKAKLDGQMRYLDKLLSEHLEGKIILIPTAHTLSGGEDR
                     YTDSVNVNGKPVRYRSKDGIHFTAEGQKLLAAKIMEKIVFEPSTQPSSTQP"
     gene            2697..3890
                     /locus_tag="ACFM5C_001177"
     CDS             2697..3890
                     /locus_tag="ACFM5C_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFC6068884.1"
                     /translation="MNPKHLIAFSALFAATQAEALPVASVSLDTVTVSPSAPYTDTNG
                     LLTDYGNAAASPWMKKIRSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDG
                     GIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNSGDFPLGGILAHTGSGGSMTLTASDG
                     KTGKQRISLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTRAALPLTIQTEMPWDIGFI
                     NIENPAGGITVSAMGINGAQLTHWSKWRADRMNDLAQTGADLVILSYGTNEAFGDNID
                     IADTEQKWLDTVRQIRDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRVA
                     RQGQTMFWSWQNAMGGICSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRA
                     AAIRQ"
     gene            complement(3950..4126)
                     /locus_tag="ACFM5C_001178"
     CDS             complement(3950..4126)
                     /locus_tag="ACFM5C_001178"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068885.1"
                     /translation="MPSENGRRQFIIFAFRRHIKRRLCAVCRRFACVLPMPEANAGCI
                     WQTVRGVAMPSEAI"
     gene            4177..5730
                     /locus_tag="ACFM5C_001179"
     CDS             4177..5730
                     /locus_tag="ACFM5C_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HFC6068886.1"
                     /translation="MNRTYANFYEMLTTACRKNGNGTAVFDGKEKTAYRALKQEAEAV
                     AAYLQNIGVKFGDTVALAVSNSTEFITAYFAISAIGAVAVPMNTFLKNSEYAYILNDC
                     KARFLFASVGLSKELAGLKAQTPIEKIIWTGKSRPVGETAEGDAFFEDVRRFPEKPDL
                     GRQPRINDLAHIIYTSGTTGHPKGALISYANLFANLNGIERIFKISKRDRFIVFLPMF
                     HSFTLTAMVLLPIYMACSIILVKSVFPFSNVLKQTLLKRATVFLGIPAIYTAMSKAKI
                     PWYFRWFNRIRLFISGGAPLAEQTILDFKAKFPRAKLLEGYGLSEASPVVAVNTPERQ
                     KARSVGIPLPGLEAKAVDEELVEVPRGEVGELIVRGGSVMRGYLNMPAATDETIVNGW
                     LKTGDFVTIDEDGFIFIVDRKKDLIISKGQNVYPREIEEEIYKLDAVEAAAVIGVKDR
                     YADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFKIPKQIHFKDGLPRNATGKVLKRV
                     LKEQFDGNK"
     gene            complement(5821..7848)
                     /locus_tag="ACFM5C_001180"
     CDS             complement(5821..7848)
                     /locus_tag="ACFM5C_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HFC6068887.1"
                     /translation="MSLSEFIERRTSFNPMVILTTLFFVCVLVVLVLTVPDQVQMWLD
                     RAKEVIFTEFGWFYVLTFSIFLGFLLILSVSSLGNIRLGRDEDVPEFGFLSWLAMLFA
                     AGMGVGLMFFGVAEPLMHYFSDITAGTPEHRQQQALLHTVFHWGVHAWSVYGTIALAL
                     AYFGFRYKLPLALRSCFYPLLKEKISGRFGDAIDIMALLATFFGIITTLGFGASQLGA
                     GLQEMGWIAENSFSVQVLIIAAVMSLAVVSAISGVGKGVKVLSELNLSLAFLLLFFVL
                     AAGPTVYLLSAFGDNIGNYLGNLVRLSFKTYAYEREHKPWFESWTVLYWAWWCSWAPF
                     VGLFIARISKGRTIREFVFGVLLIPGLFGVLWFTVFGNTAIWLNDGVAGGMLEKMTSS
                     PETLLFKFFNYLPLPELTSIVSLLVISLFFVTSADSGIYVLNNITSRDKGLSAPRWQA
                     VMWGVLMSAVAVLLMRSGGLGNLQSMTLIVSLPFALLMLIMCFSLWKGLSADKKYFET
                     RVNPTSVFWTGGKWKERLVQIMSQTQEQDILKFLKHTASPAMHELQRELSEEYGLSVR
                     VDKMFHQDEPAIEFVIRKETMRDFMYGIKSVGQDVSDQLINDGKLPHIRHQTTYKPYA
                     YFFDGRVGYDVQYMNKDELIADILKNYERYLMLLDDVGQELMAHEQVELAE"
     gene            8137..10143
                     /locus_tag="ACFM5C_001181"
     CDS             8137..10143
                     /locus_tag="ACFM5C_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HFC6068888.1"
                     /translation="MADMKKITPQNLRPLLSESLGHTDFVNVLNALIKFLRRGGKKCA
                     GERFDLIIDTFKQDRELLSRFSRCFYIWLAQIHIYPALIKLGIFSRHSFAREMGIRIY
                     ERFSPSYKDFANLGEVFLYLFHSENDDKWLQTLNIRQWLVLYELIRSHAEPSKLQTAG
                     IRLADARLRAIEMLSVWTASEAIEPDLIRIAPRLLEADSSFVALQRETAKLVEHYRNG
                     TTPYDTAHLEVMFDQCFSQIDYLRRKGTGAGSGSSVKVAHLLERLRQTVDRLKLLTDI
                     QTGAGNSNRLTIALMNSLIYAAVEQYSTRHLRRSSIRMLARSITENKSHHGEHYITRN
                     RKEYFKMFYSAAGGGIIIALMALLKIRIGTLGLSPFLTSLSAGFNYGIGFMIIHMLHC
                     TVATKQPAMTAASFAEQVDLNEGGKAVDNKLAKLLIDVCRSQSVAVFGNVSIAILLAC
                     AISFGYAHLYRLPILDAHTAAYQFKSIDIIAYPTLWYAAIAGLWLFCSGIIAGFFDNR
                     ADYLNLRQRLPFNPLLRKIMRPGPRRVLAAYIHKHYGSLVGNFIFGMLLGMTGYFGHL
                     LGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIFSVLTIGLVNLCVSFSLALFVAL
                     RSRGTKIGSIRNLIKSFWNQIKSNPCILFLPPAKEQGHPPSDKP"
     gene            10285..>10352
                     /locus_tag="ACFM5C_001182"
     CDS             10285..>10352
                     /locus_tag="ACFM5C_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6068889.1"
                     /translation="MLPSKYEDNALQIKEKSTERTAP"
BASE COUNT         2490 a         3225 c         2500 g         2137 t
ORIGIN      
        1 gtcggtatcg gcagcggcgc actgttggga cattgggtaa cgcaatatgt cggtatttcc
       61 cgtatcggca tcgccggtat gcttgcggcg gcggccgggc tgtggctgtg cctgaacttg
      121 aaccgccata tccgaacctg acccgctatg ccgtctaaag cctctcccgc ccttcagacg
      181 gcattttgat tgaagaaata tccgcccctg cttaaaataa cgggctttgc cgtgttttaa
      241 cgcctatttt cttattccaa ggatggttta tgccgctgct gtctgtcgag ttcgcactgt
      301 tctttctcgc cttcctgccg atttactggg gcttggcgaa atacccgtcc gtccaaaacc
      361 tgctgctttt ggctgccggt atgggctggc tctaccatat cggccccgta tttgcggcaa
      421 tcgtcgtcct ttattcctcc tgcgtgtacc ttttgggcga actgctccgt tccgatcgcg
      481 aaaatacgcg ccgcttttgg ctggggtgcg gcattgccgt ctcgctgacc gtcttgggct
      541 ttttcaaata tttcgacttt ttccgcccgc tgattgcaca ctatgccgga caaggcggcg
      601 caatcgacat cctgatgccg ctggggcttt cgtattacac cttccagtcg ctcgcctatc
      661 tggtttactg cttccgcgcc ccgcacgccg cgcgtttcga gtggcacgag ctgctgctgc
      721 acctgagttt tttccccacc gttacctccg gcccgattat ccgcgccgcc gcattcaaaa
      781 gcgcagacgg cgagcaggcg ggcgcattgg cgcaaatccg tacccgccaa ccgcgctcac
      841 ccgtccgccc cgcactcgcc gtttccctga ttctgctggg tattgccaaa aaatggtggc
      901 tggcggggat gctggcggaa aactgggtgt cgcccgtatt tgaaaatccc gcccaattcg
      961 acggctgggg cgtattgggc ggcgtgtacg gctatacctt ccaactcttt ttagactttt
     1021 ccggatattc cgatttggtt atcggcatgg cgatgctgct gggtttccgg ctgcccaaaa
     1081 acttctccgc accgcttcgt gctttaaaca tccgcgcatt ttgggacaaa tggcacatca
     1141 gcctttccac ctggatacgc gactacatct acatcccctt gggcggcagc aaaaaaggct
     1201 ttttacggac acagctcaac ctgatggcgg caatggtact ctcaggcatc tggcacggct
     1261 acggctggaa cttcctcatt tggggcgcgc tgcacggcac ggcactggtg ctgctcaaca
     1321 cgggcgatcg ctatttcgga cgcaacgcgc tatgccgtct gaaatacctt gcgccgctct
     1381 cgtggtttgt taccttccat ttcgtctgcc ttagctttgt tgtcttcaat accgcaagcc
     1441 ccgacgatgc aggcgcagtt ttcaatgccc tctttgccaa tgccaacggc tggaatgcgc
     1501 cgcaacaggc aaacatgctg ctgcttgcct cgtttgcatc cgtgatgctg ctctaccctt
     1561 acctgcaacg cgctttcgac ggcgcggtca aaggtttgga aaaaatcccg atgtggctgt
     1621 ggtttatccc cgtttccgcc gtcctgctgc tgattatcgt attggccccc tcggggattc
     1681 ccggctttat ttatgccaat ttttaagggt ttggacatga aaaactttct ttcccttttc
     1741 gcctccatac tgatgtctgc cctgattgcc gtgtggttca gccaaaaccc catcaacgcc
     1801 tactggcagc agacctacca ccgcaacagt ccgctcgaac cgcttgccgc ctacggatgg
     1861 tggcggagcg gtgcggcgtt gcaagaaaac gcctacacct tttcagacgg catcaaagcc
     1921 ttcctgtccg gcgaaacgcc gtcgacggct caaggcggcg gttcggcaga tatgccgtct
     1981 gaagccgccg catcagaagc cgtccctcaa accggtaaaa cagaatggaa acaagacacc
     2041 gaagccgccg ccgtccgcag cggcgacaaa gtcttttttg ccggcgactc gctgatgcag
     2101 ggcgttgcac ccttcgtgca aaaaagcctg aaacagcaat acggcatcga atccgtcaac
     2161 ctcagcaaac aaagcacggg gctgtcctac ccctcattct tcgactggcc gaaaacgatt
     2221 gaagaaaccc tgaaaaaaca tcccgaaatc agcgtgctcg ccgtcttcct cggcccgaac
     2281 gacccgtggg atttccccgt cggcaaacga tacctcaaat tcgcttccga cgaatgggcg
     2341 caagaatacc tgaaacgcgt cgaccgcatc cttgaagccg cacacacgca ccgcgtccaa
     2401 gtcgtctggc tcggcatccc ctatatgaaa aaagccaagc tcgacgggca gatgcgctac
     2461 ctcgacaaac tgctttcgga acacctggaa ggcaaaatca tcctgattcc caccgcgcac
     2521 accctgagcg gcggggaaga ccgctacacc gactccgtca acgtcaacgg caaacccgtc
     2581 cgctaccgca gcaaggacgg catacacttt accgccgaag gacaaaaact gctggcggca
     2641 aaaataatgg aaaaaatcgt ttttgaacca agtacgcaac catcaagtac acagccatga
     2701 accccaaaca cctcatcgca ttttccgccc tgttcgccgc cacgcaggca gaagccctgc
     2761 ccgtcgcctc cgtcagcctc gacaccgtta ccgtttcccc gtccgccccc tacaccgata
     2821 caaacgggct cttgaccgac tacggcaacg ccgccgcctc gccttggatg aaaaaaatcc
     2881 gatccgtcgc acaaggcagc ggcgagacct tccgcatcct gcaaatcggc gactcgcata
     2941 ccgccggcga cttctttacc gacagcctgc gcaaacgcct gcaaaaaact tggggcgacg
     3001 gcggcatagg ctgggtttac cccgccaacg tcaaagggca gcgcatggcg gcagtccggc
     3061 acaacggcaa ctggcaaagc ctcaccagca ggaacaatag cggagacttc ccgctcggcg
     3121 gcatcctcgc ccacaccggc agcggcggca gcatgaccct gaccgcatcg gacggcaaga
     3181 ccggcaaaca gcgcatttcc ctgtttgcca aacccctgct cgccgaacaa accctgaccg
     3241 tcaacggcaa caccgtctcc gccaacggcg gcggctggca ggtactggat acccgcgcgg
     3301 cactgccctt gaccatacag accgaaatgc cgtgggacat cggcttcatc aacatcgaaa
     3361 atcccgccgg cggcattacc gtttccgcca tgggcatcaa cggcgcacaa ttgacccatt
     3421 ggtcgaaatg gcgtgccgac cgtatgaacg accttgccca aaccggcgcc gatttggtta
     3481 tcctttccta cggcaccaac gaagccttcg gcgacaacat cgacattgcc gacaccgaac
     3541 aaaaatggct ggataccgtc cgccaaatcc gcgacagcct gcctgccgcc ggcatcctca
     3601 tcatcggcgc acccgaatcc ctgaaaaaca cgctcggcgt atgcggcaca cgccccgtcc
     3661 gcctgaccga agtccaacag atgcagcggc gcgtcgcccg acaggggcag acgatgttct
     3721 ggtcttggca aaacgccatg ggcggcatat gcagcatgaa aaactggctc aaccaaggat
     3781 gggccgccaa agacggcgta cacttctccg ccaaaggcta ccggcgcgcg gcggaaatgc
     3841 tcgccgacag cctcgaagaa ctcgtccgcg ccgccgcaat caggcaataa tcggacaggg
     3901 ggcggacggt atttccgcaa cagggggatg ccgtctgaaa cgcatacctt catattgctt
     3961 cagacggcat agccaccccg cgcacggttt gccagatgca accggcattc gcctcaggca
     4021 tcggaaggac gcaggcgaac ctccggcata cggcgcaaag gcggcgtttg atatgccgtc
     4081 tgaaggcaaa gatgataaac tgccgccttc cgttttcaga cggcatattg ttttcaaatg
     4141 agggcgttcg ccgtccgcaa ccataaagga agtttcatga accggactta tgccaatttc
     4201 tacgaaatgc tgaccaccgc ctgccgcaaa aacggcaacg gcacggcagt gttcgacggc
     4261 aaggaaaaaa ccgcctaccg cgcgctcaag caggaggccg aagccgtcgc ggcgtatctg
     4321 caaaatatcg gcgtgaagtt cggcgacacg gtcgcgctgg cggtttccaa ttccacagaa
     4381 tttattaccg cctatttcgc catctccgcc atcggcgcgg tcgccgtacc gatgaacaca
     4441 tttttgaaaa acagcgaata cgcgtatatc ctgaacgact gcaaggcgcg cttcctgttc
     4501 gcctcggtcg gcctgtcaaa agaattggcg ggcttgaagg cgcaaacgcc catcgaaaaa
     4561 atcatttgga cgggcaaaag ccggccggtc ggcgaaacgg cggaaggcga tgcctttttt
     4621 gaagacgtgc gccgcttccc cgaaaaaccc gacttgggcc gacaaccccg gataaatgat
     4681 ttggcacaca tcatctacac ctccggcacg acggggcatc ccaaaggcgc gctaatcagt
     4741 tacgccaatc tgttcgccaa cctgaacggc atcgaacgca tctttaaaat ttccaaacgc
     4801 gaccgcttta tcgttttcct gccgatgttc cacagcttca cgctgacggc tatggtgctg
     4861 ctgccgattt atatggcgtg ttcgattatt ttggtcaaat ccgttttccc gttttccaat
     4921 gttttgaaac agaccctgct caaacgcgcg accgtgtttt tgggcatacc cgcgatttac
     4981 accgcgatga gcaaggcgaa aatcccttgg tatttcagat ggttcaaccg cattcgcctg
     5041 tttatcagcg gcggcgcgcc tttggcggaa caaaccatcc tcgatttcaa agccaagttc
     5101 ccccgcgcca aattgctgga aggctacgga ctgagcgaag cctctcccgt cgtcgccgtc
     5161 aatacgcccg agaggcaaaa agcccgcagc gtcggcatcc ccctgcccgg tttggaagcc
     5221 aaagccgtcg atgaagaatt ggtcgaagtg ccgcgcggcg aagtgggcga actgattgtc
     5281 aggggcggtt cggtgatgcg gggctacctc aatatgcctg ccgccaccga tgaaaccatc
     5341 gtcaacggct ggttgaaaac gggcgatttc gttaccatag acgaagacgg cttcatcttt
     5401 atcgtcgacc gcaaaaaaga tttgattatt tccaaaggtc aaaatgtcta tccgcgcgag
     5461 atcgaagaag aaatctacaa actcgatgcc gtcgaagccg ccgccgtcat cggcgtgaaa
     5521 gaccgttatg ccgacgagga aatcgtcgcc ttcgtccaat tgaaggaagg tatggatttg
     5581 ggcgagaacg aaatccgccg ccacctgcgt accgtgctgg caaatttcaa aatccccaaa
     5641 caaatccact ttaaagacgg gctgccgcgc aacgctacgg gcaaggtatt gaaacgggtg
     5701 ttgaaggagc agtttgacgg aaacaaatga acgccgtgcc gtccgaagcc ccgtccggca
     5761 aaaaaaatgc ggtgaatctg cttcaccgca tttttttggc aaacgccgga gcgaggatat
     5821 ttactctgcc aattccacct gctcgtgcgc catcagttcc tgaccgacat catccaacaa
     5881 catcaaataa cgttcgtagt ttttcaaaat gtcggcaatc agctcgtcct tgttcatata
     5941 ctgcacatcg tacccgacgc gcccgtcgaa aaaataagcg tagggtttgt aagttgtctg
     6001 atgccggata tgcggcagct tgccgtcgtt aatcaactgg tcggatacat cctgcccgac
     6061 agacttaatc ccgtacataa aatcgcgcat cgtctctttc cgaatgacga actcgattgc
     6121 gggctcgtcc tgatgaaaca tcttatcgac ccggacgctc aagccgtatt cttccgaaag
     6181 ctcccgttgc aactcgtgca tagcgggcga tgcggtatgt ttgaggaatt ttaaaatatc
     6241 ctgctcctgc gtctggctca ttatctgcac cagccgttct ttccacttgc cgcccgtcca
     6301 aaatacactg gtagggttaa cccgggtctc aaaatatttc ttatccgcac tcaagccttt
     6361 ccacaggctg aaacacatta tcagcatcag cagggcaaac ggcagggaaa caatcagggt
     6421 catagactgc aggttgccga gtccgcccga gcgcatcagc aaaacggcaa cggcagacat
     6481 cagcacgccc cacataaccg cctgccaccg tggcgcgctc aagcctttgt cccgagaggt
     6541 aatattgttc aggacataaa tcccggaatc ggcagaagtt acaaaaaaca gagaaatgac
     6601 cagcaggctg acgatgctcg tcaattcggg cagggggagg taattaaaga atttaaaaag
     6661 cagcgtttcc ggagaggagg tcatcttttc gagcattccc cccgcaaccc cgtcattcag
     6721 ccaaatcgcc gtattgccga agacggtaaa ccacaaaacg ccgaacaggc cggggatgag
     6781 caaaaccccg aagacaaact cgcggatggt gcgccccttt gaaatgcgcg cgataaacaa
     6841 acccacaaac ggcgcccaag aacaccacca cgcccaataa agcaccgtcc aagattcaaa
     6901 ccacggcttg tgttcccgtt cgtacgcata agttttaaaa ctgaggcgca ccagatttcc
     6961 gaggtagttc cctatgttgt cgccgaatgc cgacaacagg taaacagtgg gacccgccgc
     7021 caaaacaaaa aacagcagca aaaacgcaag gctcaggttc aactcgctca acaccttcac
     7081 gcccttcccc acgccggata ttgccgaaac gacggcgagg gacatgacgg cggcgataat
     7141 caaaacctgc acgctgaagc tgttttcggc aatccagccc atttcctgca atccggcgcc
     7201 cagttgcgaa gccccgaacc ccaatgtggt gatgatgccg aaaaaagtag caagcaacgc
     7261 cataatatca atggcatcgc cgaaccttcc ggaaattttt tctttcaaca ggggataaaa
     7321 acaagaacgc agggcaagcg gcagcttgta gcggaaaccg aaataagcca aagccaatgc
     7381 aatcgtaccg tacaccgacc aagcgtgaac gccccaatgg aacaccgtgt gcagcaatgc
     7441 ctgctgctgc ctgtgttccg gcgtgccggc cgtaatgtcc gaaaaataat gcatcaacgg
     7501 ctctgccacg ccgaaaaaca tcagacccac gcccatcccg gccgcaaaca gcatcgccag
     7561 ccacgacagg aagccgaatt ccggcacatc ttcatcccgt ccgagcctga tgtttcccaa
     7621 actgctgacc gagagtatca gcaggaaacc cagaaaaatg gaaaacgtta aaacataaaa
     7681 ccagccgaac tcggtaaaaa tgacttcttt tgcccgatcg agccacatct gcacctgatc
     7741 cggcacggtt aaaaccaata ccaccaaaac acacacaaaa aacaaagtcg tcaaaataac
     7801 catcggatta aatgacgttc ggcgttctat aaattcagac agggacaaac cttctcactc
     7861 ctttgttaaa aacagacaaa cccggtcatc gggcaaagcg gtcaaaacct gccgacaaaa
     7921 taccggcttc cggatgacga aatgcacaaa ccggccgaaa ttgttataat cgaaaaaatt
     7981 aaaaatcaat acggattatt ctatcagatt gatttatcga tatttattat atcattaata
     8041 tagtttgatt tcaaaccggc ggaaaatgcg ccgccttccg caggcgcgcc ctccccgcca
     8101 tcggggcgtt taacgccgga ttgccgatgc ggtacaatgg ctgatatgaa gaaaattacc
     8161 cctcaaaacc tgcgccccct gctttcggaa agcttgggac ataccgattt tgtcaacgtc
     8221 ctcaacgcac tgattaaatt tttgcgccgt ggcggcaaaa aatgtgcggg ggagcgtttc
     8281 gacctgatta tcgacacatt caaacaagac agggaattgc tgtcccgctt cagccggtgt
     8341 ttttacatct ggctcgcgca aatacacatt tatccggcac tcatcaaact cggcatcttc
     8401 tcgcgccaca gctttgcccg agaaatgggc atacgcatct acgaacgctt cagcccgtca
     8461 tataaagatt ttgccaactt gggcgaagtc ttcctttatc ttttccattc cgaaaacgac
     8521 gacaaatggc tgcaaacgct caatatccgc caatggctgg ttttatacga actcatccgg
     8581 agccacgccg agccgtccaa attgcagacg gcgggcatcc gccttgccga tgcgcgtttg
     8641 cgcgccatcg aaatgctgtc tgtctggacg gcatccgaag ccatcgaacc cgacctcatc
     8701 cgcatcgccc cgcgcctgct ggaagccgat tcttccttcg tcgccctcca acgcgaaacc
     8761 gccaaactgg tcgaacacta ccgcaacggc accacgcctt acgacaccgc ccacctcgaa
     8821 gtgatgttcg accaatgttt cagccagatt gactatttgc gccgcaaagg gacgggcgcc
     8881 ggctccggtt cgtcggtcaa agtcgcccac ctgctcgaac ggctccggca gaccgtagac
     8941 cgtctaaagc tgctcaccga catccaaacc ggtgccggca acagcaaccg cctgaccatc
     9001 gcgctgatga actccctcat ctacgcggcg gtcgaacaat acagcacccg ccacctgcgc
     9061 cgcagcagca tccgtatgct cgcccgcagc attaccgaaa acaaaagcca ccacggcgaa
     9121 cactacatca cccgcaaccg caaagaatat ttcaaaatgt tctactcggc ggcaggcggc
     9181 ggcatcatca tcgccctgat ggcgctgctc aaaatccgca tcggcacact cggcctcagc
     9241 cccttcctga cttccttgtc ggctgggttc aactacggca tcggctttat gatcatccat
     9301 atgctgcact gcaccgtcgc caccaagcag cccgcgatga ctgccgccag ctttgccgaa
     9361 caggtcgatc tcaacgaagg cggcaaagcg gtggacaaca aactcgccaa gctcctcatc
     9421 gacgtatgcc gctcccaaag tgtcgccgtc ttcggcaacg tttccatcgc catccttttg
     9481 gcgtgcgcca tatcgttcgg ctatgcccat ctgtaccggc tgcccatact cgatgcccac
     9541 accgccgcct accagttcaa atccatagac atcatcgctt acccgacgct gtggtatgcc
     9601 gccattgcag gtctgtggct gttctgctcc ggcatcatcg caggtttttt cgacaaccgc
     9661 gccgactacc tcaacctgcg ccaacgcctg cccttcaacc ccttgctgcg taaaatcatg
     9721 cgccccgggc cccgccgcgt cctcgccgcc tacatccaca aacactacgg ctcgttggta
     9781 ggcaacttca tcttcgggat gctcttgggt atgaccggct atttcggaca cctcctcggg
     9841 ctgccgctgg acatccgcca cgtcgccttt tcctccgcca acctcggcta tgccgccgtc
     9901 agcggcaacg tcggtttggg cacgttcgta ctcggcattt tcagcgtcct caccatcggc
     9961 ctggtcaacc tctgcgtcag tttcagcctc gccctcttcg tcgccctgcg ctcgcgcggc
    10021 acgaaaatcg gcagcatccg caatctgatt aagagttttt ggaatcagat taaaagcaat
    10081 ccctgcatac ttttcctccc gcccgccaaa gaacagggac atcctccttc ggacaagcct
    10141 tgaccggcaa tgccgtctga agcgggcttc tccccgaata ccgccctgat gcggaaaatc
    10201 cccataaaag gatgcaaaaa tgccgtctga accgaaacgt ggttcagacg gcattttaaa
    10261 aggggctgta ctagattagc agatatgtta ccctcgaaat atgaagataa cgcactgcaa
    10321 attaaagaaa aaagtacaga aagaactgct cc
//
LOCUS       DAXHNP010000066        10342 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.066, whole genome shotgun sequence.
ACCESSION   DAXHNP010000066 DAXHNP010000000
VERSION     DAXHNP010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10342
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.066"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(99..1190)
                     /locus_tag="ACFM5C_001183"
                     /pseudo
     CDS             complement(99..1190)
                     /locus_tag="ACFM5C_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751739.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
     gene            complement(1320..1868)
                     /locus_tag="ACFM5C_001184"
     CDS             complement(1320..1868)
                     /locus_tag="ACFM5C_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6068890.1"
                     /translation="MARLTVHTLETAPEAAKARVEAVLQNNGFIPNLIGVLSNAPEAL
                     AFYQEVGKLNAANSLTAGEVEVIQIIAARTNQCGFCVAGHTKLATLKKLLSEQSVKAA
                     RALAAGEFDDAKLGALAAFTQAVMAKKGAVSDEELKAFFDAGYNQQQAVEVVMGVALA
                     TLCNYVNNLGQTEINPELQAYA"
     gene            complement(2023..2394)
                     /locus_tag="ACFM5C_001185"
     CDS             complement(2023..2394)
                     /locus_tag="ACFM5C_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HFC6068891.1"
                     /translation="MKPYKIYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLG
                     LTGAIFVLAVFAQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELP
                     ETVQAANPQAALAQYFGRGGR"
     gene            complement(2450..2557)
                     /locus_tag="ACFM5C_001186"
                     /pseudo
     CDS             complement(2450..2557)
                     /locus_tag="ACFM5C_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(2689..4380)
                     /gene="dld"
                     /locus_tag="ACFM5C_001187"
     CDS             complement(2689..4380)
                     /gene="dld"
                     /locus_tag="ACFM5C_001187"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_process: GO:0006089 - lactate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HFC6068892.1"
                     /translation="MSASQLLSRLTQTVGEKYIITDPAKTEQYRQGYRFGEGKALAVV
                     RPGSILEMWKILQACVEADVIVITQAANTGLTGGSTPDGNDYDRDIVIVNTMRMNIIQ
                     TINNNEQVVCLPGSTLNQLELLLKPLGREPHSVIGSSCIGASVLGGVCNNSGGALVQR
                     GPAYTEMALFAQINEEGRLELVNHLGIDLGDTPEEILTNLQGHHYQNKDIKQDAGKGH
                     DHAYCEHVRQVDEPTAARFNADPARHYEASGCAGKLMVFAVRLDTFPQEKQTAVFYIG
                     TNDINELTDIRRAALGEFESLPVSGEYIHRHAFDIADVYGKDTFYVIKKFGTHQLPKL
                     FDLKARVDRFGKKASFLPKHFSDKAMQFVSKYLPDHLPKSMRDYRDKYEHHLILKMGG
                     KGVDEARAFLKEYFAHHSGAFFECNAEETQAAMLHRFAVASAAIRYRAVHDDEVEDLV
                     ALDIALRRDDRDWFEKLPPEIDNKIIHKLYYGHFMCHVFHQDYIIKKGNDCMALEHEM
                     LHLLDQRGAQYPAEHNVGHLYEAKPALKQFYRKLDPTNSFNPGVGKTSKKKNWAE"
     gene            complement(4547..4643)
                     /gene="ffs"
                     /locus_tag="ACFM5C_001188"
     ncRNA           complement(4547..4643)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACFM5C_001188"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            4904..8737
                     /locus_tag="ACFM5C_001189"
     CDS             4904..8737
                     /locus_tag="ACFM5C_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3683 domain-containing protein"
                     /protein_id="HFC6068893.1"
                     /translation="MTTTTAPQRIREIPYNYTSYTDREIVIRLLGDEAWQILQDLRGQ
                     RKTGRSARMLFEVLGDIWVVVRNPYLVDDLLEHPKRRAALVREMRHRLNEIRKRRDDN
                     RQVDVLVAAAEKAVERFDSSFDETSQKRHQILERLSKITKPHNIMFDGLARVTHVTDA
                     TDWRVEYPFVVVNPDTEAEVAPLVRALIELDLVIIPRGGGTGYTGGAIPLDAMSAVIN
                     TEKLDKHRGVEFVELAGLDGRHPIIRCGAGVVTRRVEETAHQAGLVFAVDPTSADASC
                     VGGNVAMNAGGKKAVLWGTALDNLAYWQMVNPQGEWLRIERVRHNFGKIHDEETAIFD
                     VHTLDSDGLNVVKTERLEIPGHKFRKVGLGKDVTDKFLSGLPGVQKEGTDGIITSVAF
                     VLHKMPKYTRTVCMEFFGTVATATPSIVEIRDFLLAHESVRLAGLEHLDWRYVRAVGY
                     ATKAAGKGRPKMVLLADVVSDDEAAVEAAAEHICELARARDGEGFIAISPEARKTFWL
                     DRSRTAAIAKHTNAFKINEDVVIPLERLGEYSDGIERINIELSIQNKLKLCAALEQYL
                     SGKLPIDKMGTDLPTAELLGERGKHALAHVSAVKARWDWLLANLDTPLADYKARYGAA
                     VHAAPEAKDNESCFTAFRDFRLRVSVKADVMKPLSEIFSGKTDTKIIEGLGKIHAKTV
                     RGRVFVALHMHAGDGNVHTNIPVNSDDAEMLQTAYRSVERIMKIARSLNGVISGEHGI
                     GITKLEFLSDEEMQPFWDYKNQVDPKHTFNRHKLMKGSDLRNAYTPSFELLGAESLIM
                     EKSDLGTIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILGVGLLTEAFLYEEQT
                     RRGVSVKHFEELADIGDHCTVCHRCVKPCPVNIDFGDVTVAVRNYLADSGHKRFAPAA
                     AMGMAFLNATGPKTIKALRAAMIQTGFPAQNFAYKIGKLLPIGTKKQKAEPKATVGKA
                     PIKEQVIHFINRPLPKSVPAKTPRSLLGIEDGKSIPIIRNPAAPEDAEAVFYFPGCGS
                     ERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNNRVAFHRM
                     ANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPGCRIIDIHEYLLEKGVKLDGVQGQQ
                     YLYHDPCHTPIKTMNATQMASSLMGQKVVLSDRCCGESGMFAVKRPDIATQVKFRKQE
                     EIEKNLKELPQGEPVKMLTSCPACLQGLSRYTDDNNMPADYIVIEMAKHILGENWLDE
                     FVKKANNGGVEKVLL"
     gene            8813..9814
                     /locus_tag="ACFM5C_001190"
     CDS             8813..9814
                     /locus_tag="ACFM5C_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFC6068894.1"
                     /translation="MIDGQTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSE
                     FVRITHTVHSRSIWLKYVPEIANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGAN
                     KIDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHIPLTAKMRLGYEDKS
                     RALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVNIPVTANGDVFSLQ
                     DYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELC
                     LTKEANNKYPIARLKQWLGMMKKTFDPAQTLFDRVRTVKDADEVRRILNAFEHEINV"
     gene            complement(9876..10058)
                     /locus_tag="ACFM5C_001191"
     CDS             complement(9876..10058)
                     /locus_tag="ACFM5C_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068895.1"
                     /translation="MFWYVIGFCSFVVALLSLWVNVGAFGMQEDDTPQSDYEKRLGLG
                     AKLKNKNTPDTEEKQQ"
     gene            10245..>10342
                     /locus_tag="ACFM5C_001192"
     CDS             10245..>10342
                     /locus_tag="ACFM5C_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6068896.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQP"
BASE COUNT         2347 a         2814 c         2814 g         2367 t
ORIGIN      
        1 gggtttctgt tttttccgat ggattcctgt tgcgttgggg gctggattcc cgctttcgcg
       61 ggaatgacgc ggtgggggtt tcggtttttt ccgcctgttt attttgcggc ttcgattgcc
      121 gctatttctt tgcgtaggtg tttgattgcg ggggttacga tggcgacaaa catcgcttcg
      181 cggacgcgcc tttgggcggg actgcgcatc aggtagcctt ttgcgccgga atgcagtgcg
      241 gcggattggg cggcggcaag tgccagtacg gcggcggctt cgcgcagctt gagggtagca
      301 aggttgtcgg gcgtgccgct ccaagccaag ccggcgagcc gttcggtttc tgcccacgcg
      361 ccgtccaacc ttgctttgag gctgtcgtag ccgtcgtcga gatagctgtt gacttctgca
      421 ttgacgatgt tggcgaggcg gatgatgccg aggctgccgt ctatcacgcc cgcgccgatg
      481 ccgatttgca ggaggataaa gcctgctttg atgctttgga tgtagtcggc aaactgttcg
      541 ggcgcggcga tgatgtcttc gtcggggata aatacgtctt tgaagttcag gctgaaggtg
      601 cgcgtgcctt cgagggcgca aaattcgggg cagttttgca ggcttacgcc ttcccattgt
      661 ccgccggtga taaacataac gtaaccgtcg ccgatttggg cggtattcgc ctagatgtgg
      721 tcttcgccga tgttggacac ccacggcagc gcgccgttga ctgtgtagcc gccctccact
      781 cgctcagctt ggaggttgtg tttttcgatg ccggcaaggt gtttgacggt attggacatg
      841 cccgtacccg ccaatacttt gccttgcagg atgtcggcga ggtatttgtc tttgacggct
      901 tggttgggcg tttggtgcag ataccacgcg caagccgcct gacaccacgc gctgaaggag
      961 gttgcgccgc attctttgcc gatttcgcgc aagacggcga tttgcgttgc caaacccaag
     1021 ccgttgccgc cttcggcttc tgtaccgact gcgccgaatc cgccgattgc gccgagttcg
     1081 cgcataaatg cttcggggta gtatcctttg cggtcgatgt cgtccactat gggtttgagc
     1141 ttggttttga cgagttcggc aacgttggca atcagggttt gggcgttcat ctttgttcct
     1201 taaggtttgc gggggaatcg ggcgcacgcc tgatgcgcgg ctgcttccct gccgtttggc
     1261 ggcttgtttt tgtttgaggg gggttgaaaa accgcccgat attcgggcgg tttgccgtat
     1321 caggcgtaag cctgcaattc ggggttgatt tcggtttgtc cgaggttgtt gacgtagttg
     1381 cacaaagttg ccaaggctac gcccatcacg acttcgactg cctgctgctg gttgtagccc
     1441 gcatcaaaaa atgctttgag ttcctcgtcg gataccgcgc ctttttttgc cattacggct
     1501 tgggtaaagg cggcgagcgc gccgagttta gcatcgtcaa attcgcctgc cgccaaagcg
     1561 cgcgcggctt tgacggattg ttcggaaagg agttttttca gggttgcgag tttggtgtgc
     1621 cctgccacgc agaagccgca ttggttggtg cgggcggcaa taatctggat tacttcgact
     1681 tcgccggcgg tcaggctgtt ggcggcgttg agcttgccga cttcttggta aaacgccaag
     1741 gcttcggggg cgtttgataa tacgccgata aggttgggga taaagccgtt gttttgaagt
     1801 accgcctcga cgcgcgcttt ggcggcttcg ggggcggttt cgagggtgtg tacggttaaa
     1861 cgtgccattt tctttccttg ttcgcaaata ttgggtacgg gcgcatggta tgcatttcgg
     1921 aacggaatag gaaagactga ttggttatgt gctgcaaacg aaaggttata agaaatgccg
     1981 tctgaacatt tttcagacgg catgatggaa aagaaaacgc gcttatcggc ccccgcgccc
     2041 gaaatattgc gccaatgcgg cttgggggtt ggcagcttgg actgtttcgg gcaattcggt
     2101 atagccgcgc gataaaaggt ggcgtgcata aaggctgttg ccctttgcgc cgaaccagac
     2161 ggaaaccgcc aagcccaata cgttaaacgc cgagtctgtg gcgggcgtgt cgccgtaaac
     2221 cagttgggca aacacagcca gcacgaatat cgcgcccgtc agccccagcc ccaaacccca
     2281 cattcttttg aaacacgccc acagcgtgcc gaacaagagc cccggccatg accagccttg
     2341 tttgacggct tggggcggca gggcgggatg ggtgtagatt ttgtatggtt tcatcgtgtt
     2401 tccttttcgg ttgaaaccct gccctttggg aaggtaggat cagactttat agtggattaa
     2461 atttaaacca gtacggcgtt acctcgcctt gccgtactat ctgtactgtc tgcggcttcg
     2521 ttgccttgtc ctgatttaaa tttaatccac tatatttggg aggggcgcgc ccgtgtgtcg
     2581 gcatacggtt tgaaagcgat tacccgacgg ggaacttcaa acccgacaat gccgtctgaa
     2641 cggcgttttg ccttcagacg gcattgcctg ccttcaaagc ggacacgctt attccgccca
     2701 gtttttcttt ttgctggttt tgcctacgcc cgggttgaag ctgttggtcg ggtcaagttt
     2761 gcggtaaaac tgtttgagcg cgggtttggc ttcatacaaa tgaccgacgt tgtgttcggc
     2821 gggatattgc gcgccgcgtt ggtctaaaag atgcagcatt tcgtgttcca acgccatgca
     2881 gtcgttgcct tttttgatga tgtaatcctg atggaaaacg tggcacatga aatgtccgta
     2941 gtagagtttg tggatgattt tattgtcgat ttcgggcggc agtttttcaa accagtcgcg
     3001 gtcgtcgcgg cgcagggcga tgtcaagcgc gaccaagtct tccacttcgt catcatgcac
     3061 ggcgcggtag cggatggcgg cggaggcgac ggcgaaacgg tgcagcatcg cggcttgggt
     3121 ttcttcggcg ttgcactcga aaaacgcgcc gctgtggtgt gcaaaatatt cttttaagaa
     3181 cgcgcgcgcc tcatccacgc ctttcccgcc cattttcaga atcaaatggt gttcgtattt
     3241 gtcgcggtaa tcgcgcatgg atttgggcag gtggtcgggc aggtatttgc tgacgaactg
     3301 catggccttg tcggaaaaat gtttgggcag gaagctggct tttttgccga acctgtccac
     3361 gcgcgccttc aagtcaaata atttcggcag ttggtgcgta ccgaattttt tgatgacgta
     3421 aaacgtgtct ttgccgtaca cgtcggcaat atcgaaagcg tggcggtgga tgtattcgcc
     3481 ggaaacaggc aggctttcaa attcgcccaa ggcggcgcgg cggatgtcgg tcagctcgtt
     3541 gatgtcgttc gtgccgatgt agaacacggc ggtttgtttt tcttgcggga aggtgtccaa
     3601 acggacggca aaaaccatca gtttgcccgc gcagcccgag gcttcgtaat ggcgggcggg
     3661 gtcggcattg aaacgcgcgg cggtcggttc gtccacttgg cggacgtgtt cgcaataggc
     3721 gtggtcgtgt cctttgcccg cgtcttgttt gatgtctttg ttttgataat gatgaccttg
     3781 caggttggtc aggatttctt cgggcgtgtc gcccaagtct atgcccaagt ggttgaccag
     3841 ttccaacctg ccttcttcgt tgatttgggc gaacagtgcc atttcggtgt aggccgggcc
     3901 gcgctgtacc aatgcgccgc cggagttgtt gcacacgccg cccaagacgg acgcaccgat
     3961 gcaggaagag ccgataaccg aatgcggttc gcgtcccaag ggtttcagca gcaattcaag
     4021 ctggttcagg gtcgagccgg gcaggcagac gacttgttcg ttgttgttga tggtttggat
     4081 gatgttcatc cgcatggtgt tcacaatcac gatgtcgcgg tcgtaatcgt tgccgtcggg
     4141 ggtcgaaccg ccggtcagtc cggtattcgc cgcctgcgta atcacaatca cgtctgcttc
     4201 gacgcacgcc tgcagaattt tccacatttc cagaatgctt ccggggcgaa ccaccgccaa
     4261 cgccttaccc tcgccgaagc ggtaaccttg gcggtattgt tcggttttcg cggggtcggt
     4321 aatgatgtat ttttcgccta cggtttgggt cagtcttgac agtaattgtg atgcgctcat
     4381 ggcagtttcc ttaaaattgt cggcaggtgc attgcacatt ggaattgttt tcacattgta
     4441 gttatacgtt atggcaaagt aaagaaaatg ccgtctgaac ggctttcaga cggcaacggt
     4501 gcgatacggg aacgccggaa catcaaagct ccggcgtttc aaatagggcg gcgggccaaa
     4561 cccccggcac tggcgcaccg gagtgggctg ctggcttccg cccctgaccc ggtgttccga
     4621 tttgccatgc ggggagaccc gcctcagaga aacggcatta taacgggttt tctgaaaaac
     4681 tcaaccgttt tgatacggtc atacgccgga aacaccacct aaaatttata tttgataata
     4741 ttgtcaacaa tttctcaaag cgttattttg tttctataag ggtatttcct gtttcggcat
     4801 tgaaaaatat caaaaattga actacattat cgccttttca aactcgcctg aaaccgaatt
     4861 ttcagacggc attcaaataa aaactgccaa gcacggacac accatgacca cgactactgc
     4921 ccctcagcgt attcgagaaa ttccctataa ctatacttct tataccgacc gcgaaatcgt
     4981 catccgcctg ctgggcgacg aagcgtggca gattctgcaa gacttgcgcg gacagcgtaa
     5041 aaccggacgt tcggcacgga tgctgtttga agtgttgggc gatatttggg tagttgtgcg
     5101 caatccatat ctggtcgatg acttgttgga gcacccgaaa cgccgcgccg cgctggtgcg
     5161 ggaaatgcgc caccgtttga acgaaatccg caaacgccgc gacgataatc ggcaagtgga
     5221 tgtattggtt gcggcagcgg aaaaggcagt cgagcgtttt gatagcagtt ttgatgaaac
     5281 cagccaaaaa cgccatcaaa ttttggaacg cttaagcaaa attaccaagc cgcacaatat
     5341 tatgttcgac gggctggcgc gggtaacgca tgttaccgat gcaaccgact ggcgcgtcga
     5401 atatccgttt gtcgtcgtca atcccgacac ggaggcggaa gtcgcgcctt tggtgcgcgc
     5461 cttaattgag ttggacttgg ttattatccc gcgcggcggc ggtacgggtt ataccggcgg
     5521 cgcgattcct ttggacgcaa tgagcgcggt catcaatacg gaaaagctgg acaaacatcg
     5581 cggcgtggaa tttgtcgaac tggcgggctt ggatggcaga catccgatta tccggtgcgg
     5641 cgcgggcgtg gttacgcggc gagtggaaga aaccgcgcat caggcaggtt tggtgttcgc
     5701 cgtcgatccg acttctgccg acgcgtcctg cgtgggcggt aatgtagcga tgaacgcggg
     5761 cggtaaaaaa gccgtgctgt gggggacggc gttggacaac ctcgcctact ggcaaatggt
     5821 caaccctcaa ggcgaatggc tgcgtatcga acgcgtgcgc cacaatttcg gcaaaatcca
     5881 cgacgaagaa accgcaatat ttgacgttca cacactggat tcagacggcc tcaatgtcgt
     5941 caaaaccgaa cgcttggaaa ttcccggtca caaattccgc aaagtcggtt tgggcaaaga
     6001 cgttaccgac aaattcttga gcggcctgcc cggcgtgcag aaagaaggca cggacggcat
     6061 catcaccagc gttgccttcg tgttgcataa aatgccgaaa tacacgcgca ccgtgtgtat
     6121 ggagtttttc ggcacggttg ccaccgccac gccatctatt gtcgaaatcc gcgacttttt
     6181 gcttgcccat gaaagcgtac ggctggcagg tttggaacat ttggactggc gttatgtccg
     6241 cgccgtcggc tacgccacca aagcggcggg caagggacgg ccgaaaatgg ttttgctggc
     6301 ggacgtggtt tcagacgacg aagccgccgt agaggcagcc gccgaacaca tctgcgaact
     6361 tgcccgcgcc cgcgacggcg aaggctttat cgccatatct cccgaagccc gcaaaacctt
     6421 ctggctcgac cgcagccgca ccgccgccat cgccaaacac accaacgcct ttaaaatcaa
     6481 cgaagacgtg gtcatcccac tcgaaaggct cggcgagtat tcagacggca tcgaacgcat
     6541 caacattgag ctttccattc aaaacaaact caaactctgt gccgccttgg agcaatatct
     6601 gtccggcaaa ctccccatcg acaaaatggg aaccgacctg ccgaccgccg aactgttggg
     6661 cgaacgcggc aaacacgccc tggcccacgt ttccgccgtc aaagcgcgtt gggactggtt
     6721 gctcgccaat ctcgacacgc cgcttgccga ctacaaggcc cgctacggcg cagccgtcca
     6781 cgccgcgccc gaagccaaag acaatgaaag ctgctttacc gcattccgcg atttccgcct
     6841 gcgcgtgtct gtcaaagcag acgtaatgaa gccgctttct gaaatcttca gcggcaaaac
     6901 cgacaccaaa atcatcgaag gcttgggcaa aatccacgcc aaaaccgtgc gcggcagagt
     6961 ctttgtcgcc ctgcatatgc acgccggcga cggcaatgtc cacaccaata tccccgtcaa
     7021 ttcagacgat gccgaaatgc ttcagacggc ataccgttct gtggaacgca ttatgaaaat
     7081 cgcccgttcg cttaacggcg tgatttccgg cgaacacggc atcggcatta ccaagctcga
     7141 atttttaagc gacgaagaaa tgcagccgtt ttgggactac aaaaaccaag tcgatcccaa
     7201 acacaccttc aaccgccaca aactgatgaa aggctcggac ctgcgcaacg cctatacgcc
     7261 gtctttcgag cttttgggcg cggaatcgct gattatggaa aaatcagacc tcggcacgat
     7321 tgccgattcc gtcaaagact gcctgcgctg cggcaaatgc aaacccgtct gctccaccca
     7381 cgttccgcgt gccaacctgc tgtacagccc gcgcaacaaa atcctcggcg tggggctctt
     7441 gaccgaagcc tttttatacg aagaacaaac ccgtcgcggc gtttccgtca aacattttga
     7501 agaactggca gacatcggcg accactgcac cgtgtgccac cgctgcgtca aaccctgccc
     7561 cgtcaatatc gacttcggcg acgtaaccgt agccgtccgc aactaccttg ccgattccgg
     7621 ccacaaacgc tttgcgcctg ccgcagctat gggtatggcg tttttgaacg ccaccggccc
     7681 gaaaaccatc aaagcccttc gcgccgccat gatacagacc ggcttcccag cgcaaaactt
     7741 tgcctacaaa atcggcaagc ttcttccgat cggcacgaaa aagcaaaaag ccgaacccaa
     7801 ggcaaccgtc ggcaaagccc caattaaaga acaggttatc catttcatca accgtccttt
     7861 gccgaaaagc gtacccgcca aaacaccgcg ctccttattg ggcatcgaag acggcaaaag
     7921 catccccatc atccgcaacc ccgccgcgcc cgaagatgcc gaagccgtgt tctacttccc
     7981 gggttgcggt tcggaacgcc tgttcagcca aatcggactt gccgttcaag ccatgctctg
     8041 gcacgtcggc gtacaaaccg tcctgccgcc cggctatatg tgttgcggct atccgcaaga
     8101 cgcgggcggc aacaaggcta aagccgaaga aatgagcacc aacaaccgcg tggctttcca
     8161 ccgtatggca aacaccctca actacctcga cattaagacc gtcgttgtca gttgcggcac
     8221 ttgttacgac cagctcgaaa aataccgctt tgaagaaatc ttccccggct gccgcatcat
     8281 cgacatccac gaatacctgc tcgaaaaagg cgtgaaactc gacggcgtgc aaggtcagca
     8341 atacctctac cacgacccct gccacacccc catcaaaacc atgaacgcca cccaaatggc
     8401 cagcagcctg atggggcaga aagtcgtctt aagcgaccgc tgctgcggcg agtccggtat
     8461 gttcgccgtc aaacgacccg atatcgccac ccaagtcaaa ttccgcaaac aagaggaaat
     8521 cgagaaaaac ctcaaagagc tgccgcaggg tgaacccgtc aaaatgctta cttcctgccc
     8581 agcctgcctg caaggcttga gccgctacac cgacgacaac aatatgcctg ccgactacat
     8641 cgtcatcgaa atggcgaaac acatcctcgg cgaaaactgg ctagacgagt ttgtgaaaaa
     8701 agccaacaac ggcggcgtgg aaaaagtatt gctgtaacaa cggacacgga aatgccgtct
     8761 gaacgccgaa gtcttcagac ggcattgttt aaacccaata cctacccaaa tcatgattga
     8821 cggacaaaca accgaaccca aacaaaaaac ccgaatcatc cttgccccta tgcagggtct
     8881 ggtcgatgac gtgatgcgcg acctgctgac gcgtattggc ggctacgacg aatgcgtcag
     8941 cgaatttgta cgcattaccc ataccgtgca ttcccgatcc atatggttaa aatatgtccc
     9001 cgaaatcgcc aacggaaaca aaacgttttc cggcacgccc tgcaccgtcc aacttttggg
     9061 cagcgatgcg gacaatatgg cggcgaatgc gctggaagcc gtccgcttcg gtgcgaacaa
     9121 aatcgatttg aacttcggct gccccgcgcc caccgtcaac aaacacaaag gcggcgcaat
     9181 ccttttaaaa gagccggaac tgatattcca catcgtcaaa acgctgcgcg gacgtttgcc
     9241 cgcacatatt ccgctcaccg caaaaatgcg gctcggttac gaagacaaaa gccgggcttt
     9301 ggaatgcgcc tgtgcgattg ccgaaggggg cgcatgcgga ctgaccgtac acgcgcgtac
     9361 caaagccgag ggttacgaac cgccggcgca ttgggaatgg ataaggaaaa tccgagacag
     9421 cgtcaatatt cccgttaccg ccaacggcga cgttttcagc ctgcaagact atatcggcat
     9481 caaaacaatc agcggctgca acagcgtgat gctcggtcgc ggcgcggtca tccgccccga
     9541 tttggcgcgg caaatcaagc aatacgagaa cggcgggccg gtcaaagaca cggattttgc
     9601 cgaagtttcc aaatggatac ggcagttttt cgagctgtgc ctgacaaaag aggcaaacaa
     9661 taaatacccg atcgcccgtc ttaagcaatg gttgggcatg atgaaaaaaa cgttcgaccc
     9721 ggcgcaaacg ctgtttgacc gcgtccgaac ggttaaggat gcggatgaag tccgccgaat
     9781 cctgaacgca tttgagcatg agataaatgt ttgactgtct cccatgcttc aaagcaaatg
     9841 ccgtctgaaa atctttcaga cggcatttca tatctttatt gctgcttttc ttccgtatcc
     9901 ggcgtatttt tgtttttcag cttcgcaccc aagcccaaac gtttttcata atccgattgc
     9961 ggggtatcgt cttcctgcat accgaatgcg ccgacattga cccacagcga cagcagcgcg
    10021 acgacaaagg agcaaaagcc gattacatac caaaacattg cccctcccga tttgttaaaa
    10081 tcatatcaaa tacagtgccg aatttatcac aaacgcacgg gcaaatatag tgaattaaat
    10141 ttaaataagg acaaggcggc gagccgaaga cagtacaaat agagaccttt gcaaaattcc
    10201 ccaaaatccc ctaaattccc accaagacat ttaggagatt tctcatgagc accttcttcc
    10261 aacaaaccgc gcaagccatg attgccaaac acatcgaccg tttcccgcta ttgaagttgg
    10321 accaggtgat tgattggcag cc
//
LOCUS       DAXHNP010000067        10248 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.067, whole genome shotgun sequence.
ACCESSION   DAXHNP010000067 DAXHNP010000000
VERSION     DAXHNP010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10248
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.067"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            55..294
                     /locus_tag="ACFM5C_001193"
     CDS             55..294
                     /locus_tag="ACFM5C_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068897.1"
                     /translation="MNVWDIWGRMVEIYHKYKKPCLVLAVDFVMGMVFIEPNEEPCIG
                     RCYAPMSESPDFANAVAMAVAMICIVWIAVLSMTD"
     gene            508..1809
                     /gene="bioA"
                     /locus_tag="ACFM5C_001194"
     CDS             508..1809
                     /gene="bioA"
                     /locus_tag="ACFM5C_001194"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFC6068898.1"
                     /translation="MPSEHQHTSSLLDFDRTHLLHPYTSMTDPLPVYPVKRAEGVFIE
                     LADGTRLVDGMSSWWCAIHGYNHPVLNQAVETQIKQMSHVMFGGLTHEPAVELGKLLV
                     GILPQGLDRIFYADSGSVSVEVALKMAVQYRQVRGLTAKQNIATVRRGYHGDTWNAMS
                     VCDPETGMHHIFGSALPQRYFVDNPTSRFDDEWDEADLQPVRALFEVHHADIAAFILE
                     PVVQGAGGMYFYHPQYLRGLRDLCDEFDIVLIFDEIATGFGRTGKMFACEHAEVVPDI
                     MCIGKGLSGGYMTLAAAITSQKVTETISRGEAGVFMHGPTFMANPLACAVACASVKLL
                     LSQDWQANIRRIESILKGRLKAAWDIRGVKDVRVLGAIGVIELDKGVDMARFQADCVA
                     QGIWVRPFGRLVYLMPPYIISDGVLTKLADKTVQILKEHSK"
     gene            1806..2453
                     /gene="bioD"
                     /locus_tag="ACFM5C_001195"
     CDS             1806..2453
                     /gene="bioD"
                     /locus_tag="ACFM5C_001195"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFC6068899.1"
                     /translation="MKGVYFVSGIDTDIGKTVATGMLAKQLLQQGKSVITQKPVQTGC
                     QDIAEDIAVHRKIMGIPMQEADKQGLTMPEIFSYPASPHLAARLDGRALDLDKIRTAT
                     QQLAAQYEIVLVEGAGGLMVPLTENLLTIDYIRQQGYPVILVTSGRLGSINHTLLSFA
                     ALKQYGIRLHSLIFNHIHDSSDECVAQDSLSYLKCRLKADFSEAEWMELAKTDAV"
     gene            2468..2944
                     /locus_tag="ACFM5C_001196"
     CDS             2468..2944
                     /locus_tag="ACFM5C_001196"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HFC6068900.1"
                     /translation="MEHLFGKWLPDLPTPISDGISLPMVRLLHTRSLTAALRALPHTF
                     SVELLKLGELETECGGRLVREVLLKLDGIPVVAARSECRIGSAFWQNILDCGTRPLGE
                     RLFQADLEGARSAFEFAVFGEGCGRYFAARRSRFSHHGEEMLLTEYFLPELKRFIG"
     gene            2974..3864
                     /gene="ubiA"
                     /locus_tag="ACFM5C_001197"
     CDS             2974..3864
                     /gene="ubiA"
                     /locus_tag="ACFM5C_001197"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HFC6068901.1"
                     /translation="MNPKSPLFLRLSDRLDVYIRLMRADKPIGTLLLLWPTYWALWLA
                     SDGIPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVKKKEAL
                     LLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIP
                     MAFAAVAGNVPPQAWILFAANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFGRYDIA
                     AVMLCHGGFTLLMAVLGAVIGAAWAYWTAIPIVLLLQYRQYAAIKSRVRQICFETFLA
                     NNRIGWVWFTAIFAHTFFAK"
     gene            4049..4498
                     /gene="ptsN"
                     /locus_tag="ACFM5C_001198"
     CDS             4049..4498
                     /gene="ptsN"
                     /locus_tag="ACFM5C_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HFC6068902.1"
                     /translation="MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADV
                     FECLFAREKLGSTGLGQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFI
                     LLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEARAILTEE"
     gene            4502..5464
                     /gene="hprK"
                     /locus_tag="ACFM5C_001199"
     CDS             4502..5464
                     /gene="hprK"
                     /locus_tag="ACFM5C_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HFC6068903.1"
                     /translation="MPSISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALV
                     GHLNFIHPNQIQVVGLAESEYLNRLESGETGYQFGDLFDISMSLVIVANGLPVSPGLR
                     DYCHKNDIPLLTSKLESPYLMDVLRIYLQRTLAASSVKHGVFLDVFEIGVLITGHSGL
                     GKSELALELISRGHSLIADDAVELFRIGPETLEGRCSPMLRDFLEVRGLGILNIRHIF
                     GETSIRPKKILQLIINLVEADDEYMKQLDRLSIRTETESILNVNVRSVTLPVAVGRNL
                     AVLVEAAVRNYILQLRGKDSTREFLERHQTQLKENEQNHENRPD"
     gene            5445..6299
                     /gene="rapZ"
                     /locus_tag="ACFM5C_001200"
     CDS             5445..6299
                     /gene="rapZ"
                     /locus_tag="ACFM5C_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HFC6068904.1"
                     /translation="MKIVLISGLSGSGKSVALRQMEDSGYFCVDNLPLEMLPALVSYH
                     IERADETELAVSVDVRSGIDIGQAREQIAYLRGLGHRVEVLFVEAEESVLVRRFSETR
                     RGHPLSNQDMTLLESLKKEREWLFPLKEIAYCIDTSKMNAQQLRHAVRQWLKVERTGL
                     LVILESFGFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQEM
                     VDDIERFVTHWLPRLEDESRSYVTVAIGCTGGQHRSVYIVEKLARRLKGRYELLIRHR
                     QAQNLPSR"
     gene            6381..7322
                     /gene="ylqF"
                     /locus_tag="ACFM5C_001201"
     CDS             6381..7322
                     /gene="ylqF"
                     /locus_tag="ACFM5C_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HFC6068905.1"
                     /translation="MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLL
                     AQLSKGKPKLKILNKQDLADPERTKVWLDHYNSRPDTRAIALDSSETGAHGKITQACR
                     AMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
                     FWLYDTPGMLWPKIIVEESGYNLAAGGSVGRNALDEEEVALELLDYLRRHYLPMLQER
                     YQADKDPSSHWDENVWLEWIAKKRGAVLSGGRINYQKAAENILTDFREGKIGRITLET
                     PNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA"
     gene            7423..8025
                     /locus_tag="ACFM5C_001202"
     CDS             7423..8025
                     /locus_tag="ACFM5C_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0051304 - chromosome separation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HFC6068906.1"
                     /translation="MTDKISPDALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVL
                     AQLKTRWQDRALQLVHTQEGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQ
                     QPVTRGDIEGIRGVAVSQNVIQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLD
                     GLEELPPLTELGELVLPDLIEMPPTDEEEPTTVPSDTLPN"
     gene            8209..9882
                     /gene="recN"
                     /locus_tag="ACFM5C_001203"
     CDS             8209..9882
                     /gene="recN"
                     /locus_tag="ACFM5C_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HFC6068907.1"
                     /translation="MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGL
                     LLGDKADYSQVRSGAKEAQLSALFDISHLPVLKEELREQGLLDDGGEELSIRRIIDAK
                     GKSRSFINNQASTLAQLKAVGSQLIDIHGQNAHHSLNQEAAQRELLDAFAGSRAQAET
                     VRQLYQNWVNAKKALQEAQEHADAVIIERERLEWQFNELNQLDIKQGEWEALSQSHDS
                     LAHSAELLQAAEEVGSKIDGDNGIQRHIYQCQKLLANLQNIEPRFAESLNMLASIEAE
                     LGEISANMRDVAGRSDINPNELAAQEQRMGELMGIARKYRIEPEELPAKLAEIEERLQ
                     SLQAAADLDALEHNVAHNFAEYQEAAHILSAMRHQAAERLSGETTEHMQHLAMKGARF
                     DIVLLPSSPTAHGLEQVQFQVAANKGNPPRPLNKVASGGELARISLALQVVASQYTQV
                     PTLIFDEVDTGIGGGVAEMVGKALRALGRKHQVLAVTHLPQVASCGENHWRVRKHSEG
                     EQTVSEISILDKIQRVEEVARMLGGEVITDTTRQHAAELLQLASKNSLF"
     gene            9992..10068
                     /locus_tag="ACFM5C_001204"
     tRNA            9992..10068
                     /locus_tag="ACFM5C_001204"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10026..10028,aa:Arg,seq:acg)
     gene            10086..10160
                     /locus_tag="ACFM5C_001205"
     tRNA            10086..10160
                     /locus_tag="ACFM5C_001205"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10119..10121,aa:Glu,seq:ttc)
BASE COUNT         2477 a         2578 c         2793 g         2400 t
ORIGIN      
        1 ataaaatagg gctgtaacct tcaatcggaa tttgttgcct gcgggatatg cggtatgaat
       61 gtttgggata tatggggcag gatggtggaa atctatcata agtataagaa gccgtgcctg
      121 gttttggcgg tggattttgt gatgggtatg gtattcatag agccgaatga ggagccgtgc
      181 atcggcagat gctatgcgcc tatgtcggag tcccctgatt ttgccaacgc tgttgcgatg
      241 gctgttgcta tgatctgtat cgtatggatt gccgttttgt ctatgactga ttgaagcgtt
      301 gggcggaggc tgcgtgaaac ggtattgggc gttgggccgt ctgattccaa tcgggcttga
      361 ggaatgcgaa acggtgtgcg cttatgttgc ggaacgattt gtttcgcggt tttgcgcccg
      421 aaacggatgg agaggtgtgg gaaacggtct gtcggagtag aatacgcgtt tgcgtttgaa
      481 tgcagcaata agaaaagaga gaaacttatg ccgtctgaac atcaacacac atcatcatta
      541 cttgatttcg accgtaccca tctgctccat ccctatactt ccatgaccga tccgcttccc
      601 gtttatcctg tcaaacgtgc agaaggggtg tttatcgaat tggcggacgg cacgcggctg
      661 gttgacggga tgtcgtcctg gtggtgtgcg atacacggtt acaatcatcc tgttttgaat
      721 caggcggttg agacgcagat taaacaaatg tcgcatgtga tgttcggcgg tttgacgcat
      781 gagcctgcgg tggagctggg taaattgttg gttgggattt tgccgcaggg gttggaccgt
      841 attttttatg cggattcagg ttcggtttcg gtggaagttg cgttgaaaat ggcggtgcaa
      901 taccggcagg tgcgggggtt gacggcgaag cagaatattg cgacggtgcg gcgcgggtat
      961 cacggcgata cttggaacgc gatgtccgtc tgcgatccgg aaacggggat gcaccatatt
     1021 ttcggcagcg cgttgccgca gcgttatttt gtcgataacc cgacaagccg tttcgacgat
     1081 gaatgggacg aggcggattt gcagcctgtc cgcgccttgt ttgaagtgca tcatgcggat
     1141 attgccgcct ttattttaga gccggtcgtg cagggcgcgg gcggcatgta tttttatcat
     1201 ccgcagtatc ttcgcggatt gcgcgatttg tgcgacgagt ttgatatcgt tttgattttt
     1261 gatgaaatcg ccaccggatt cgggcgcacg ggcaagatgt ttgcctgcga acacgcggag
     1321 gtcgtgccgg atattatgtg catcggcaag ggtttgagcg gcggctatat gacgctggcg
     1381 gcagcaatca cttcgcaaaa agttaccgaa acgatttcgc gcggcgaagc gggcgtgttt
     1441 atgcacggcc cgacgtttat ggcaaacccg ctggcgtgtg ccgttgcctg cgcttcggtc
     1501 aaactgcttt tgtctcaaga ctggcaggca aatatccgcc gcattgaaag catcttaaaa
     1561 ggccgtctga aagccgcgtg ggacattcgc ggcgtgaaag acgtacgcgt tttgggtgcc
     1621 atcggcgtga tcgagctgga taaaggcgtg gatatggcgc gttttcaagc agattgcgtg
     1681 gcacagggca tttgggtgcg cccgttcggc aggctggtat atctgatgcc gccgtatatt
     1741 atttcagacg gcgttttgac caaacttgcc gacaaaaccg tgcaaatctt gaaggaacac
     1801 agcaaatgaa aggcgtttac ttcgtcagcg gcatagacac ggacatcggc aaaactgtcg
     1861 ccaccggtat gttggcaaaa caattgttgc agcagggcaa aagcgtgatc acgcaaaagc
     1921 ccgtgcaaac cggttgccaa gacatcgccg aagacatcgc cgttcaccgc aaaatcatgg
     1981 gcatcccgat gcaggaagcg gacaaacaag ggctgaccat gcctgaaatc ttcagttatc
     2041 cagcttcgcc tcatctcgct gcccgtcttg acggcagggc tttggacttg gacaaaatcc
     2101 gcaccgccac gcagcaactg gcggcgcaat acgaaatcgt cttggtcgaa ggcgcgggcg
     2161 gattgatggt tccgctgacg gaaaacctgt taaccattga ttatatccgt cagcaaggct
     2221 atcccgtcat cctcgttacc agcggacggc ttggcagtat caaccacact ttactcagtt
     2281 tcgccgcgct caaacaatac ggcatccgcc tgcacagcct gattttcaac catattcacg
     2341 acagttccga cgaatgtgtc gcccaagaca gcctgagcta cttgaaatgc cgtctgaaag
     2401 ccgatttttc cgaagcggaa tggatggagt tggcaaaaac agacgcggta taaagattgg
     2461 gaaaaatatg gaacacctat ttgggaaatg gctgcccgac ttgcccaccc ccatttcaga
     2521 cggcatcagc ctgccgatgg tgcggctgct gcacacccgg tcgctgaccg ccgcattgcg
     2581 cgccttgccg catacatttt cggtggaact gctgaaactg ggcgaattgg agacggaatg
     2641 cggagggagg ctggtgcgcg aagttttgtt gaagctggac ggtatccctg ttgtcgcggc
     2701 aaggagcgag tgccggatag gttcggcgtt ttggcaaaac attttggact gcggcacgcg
     2761 tcctttgggc gaacgtctgt ttcaagccga tttggaaggg gcgcgttcgg cgtttgagtt
     2821 tgccgttttc ggcgaaggat gcggacggta ctttgccgct cggcgttcgc ggttttccca
     2881 tcacggcgag gaaatgctgc tgaccgagta ttttctgccc gaactgaaac gctttatcgg
     2941 ataaaatacc gttttttcaa gctgcgcggc aatatgaatc ctaaatcccc tttattttta
     3001 cgcctgtccg atcgtttgga cgtttatatc agactgatgc gggcggacaa gcccattggg
     3061 acgctgcttt tgctgtggcc gacctactgg gcgttgtggc tggcttcaga cggtattccc
     3121 gatttggcgg tattggcggc gtttacaatc ggcacgtttt taatgcgcag tgccggctgc
     3181 gtcatcaacg attttgccga ccgcgatttt gacggggctg tcgagcgcac taaaaaccgt
     3241 ccgttcgcac agggcagggt caagaaaaaa gaagcgctgc tgctgacggc atttttgtgc
     3301 ctgcttgccg cattgtgcct gattccgctg aatcatctga catggctgat gagcctgccc
     3361 gcgctgtttc ttgcgctgac ttacccgttt accaaacgct tttttccgat tccccaactc
     3421 tatctcgggc ttgccttttc cttcggtatc ccgatggcgt ttgccgccgt tgccggaaac
     3481 gtgccgcctc aagcgtggat actctttgcc gccaatgtgt tatggactct ggcgtatgac
     3541 acggtttatg caatggcgga caaagaagac gatttgaaaa tcggcatcaa aacctccgcc
     3601 gtcacgttcg ggcgttacga catcgccgct gttatgctgt gtcatggcgg ctttaccctg
     3661 ctgatggcag tattgggggc ggttatcggt gcggcatggg catattggac ggcaatcccc
     3721 atcgtcctgc tgctgcaata ccgccaatat gccgccatca aaagccgcgt ccggcaaatc
     3781 tgttttgaaa cgtttttggc aaacaacaga attggttggg tgtggtttac cgccattttt
     3841 gcccatacgt ttttcgcgaa ataaggcagg gcaatgccgt ctgaagagcc gtaaactgct
     3901 ttggacggca tttctatctg tgccgaaaag cgttaaaata tgtttttaaa acgctgtgtt
     3961 atgtcagccc gtaccgtatg cgggattgag atttgccccg gcagtcggta caatctttct
     4021 gttttgcgat gtctgaaaag agaagcttat gagccttatc ggcgaaattt tgcctttgtc
     4081 ccatattgtt ttggatatgg aggtgggcag taaaaaaagg ctgtttgagg aagcaggcct
     4141 gcttttggaa cgcgaatcct cattgtccca tgctgatgtt ttcgaatgtc tttttgcccg
     4201 tgaaaaactc ggttcgaccg gtttggggca gggcgttgcc atcccgcacg gccgtcatgc
     4261 cggcgtgaag caggcgacgg gcgcgttcat ccgcacgcgc gaacccgtcg gatttgacgc
     4321 accggacggc aaaccggttt ccctggtttt tatcttgctg gttcctgaga atgcaacggg
     4381 cgagcatttg gaggtattgt ccaaactggc cggcaagttt tcccaaaaaa gcatccgcga
     4441 atcgctgatg acggtttctt ctgcggaaga agcccgcgcc atcctgaccg aagaataaaa
     4501 tatgcccagt atctctgtcc gccgactgtt tgacgacaac caatacaagt tgcaacttgc
     4561 ctgggccgcc ggcaattcgg gtgcggacaa ccgtatcggc gtagaggcgg acaagcccgt
     4621 cctcgctttg gtcggacacc tgaatttcat ccaccccaac caaatccaag tggtcggttt
     4681 ggcggagtcg gaatatctga accgtctcga atcgggggaa acgggttatc agttcggcga
     4741 cctgttcgac atttctatgt ctttggttat tgtggcaaac ggcttgccgg tttccccggg
     4801 actgcgcgac tactgccata aaaacgatat tccactgctg acttccaaac tcgaaagccc
     4861 ctatctgatg gacgtgttgc ggatttacct gcaacgcacc ctggcggcat cgtccgtcaa
     4921 acacggcgta tttctcgatg tgtttgaaat cggcgtgctg attaccggac attcgggttt
     4981 gggtaagagc gaattggcgt tggagctgat ttcgcgcggc cacagcctga ttgccgacga
     5041 tgcggtcgag ctgttccgca tcggcccgga aacgctggaa gggcggtgtt cgcctatgct
     5101 gcgcgatttt ttggaagtgc gcggcttggg gatactcaat atccgccata ttttcggcga
     5161 aacttccatc cgccccaaaa aaatcctgca actcattatc aatttggtcg aggcagacga
     5221 cgagtatatg aagcagctcg accggttgag tatccgcacc gaaaccgaat ccatcctcaa
     5281 cgtcaacgtc cgttcggtaa cgctgcctgt cgcggtcgga cgcaaccttg ccgtattggt
     5341 tgaagcggcg gtacgcaatt acattttgca gttgcgcggt aaggacagta cgcgcgaatt
     5401 tttggaacgc catcagacgc aacttaaaga aaacgaacag aatcatgaaa atcgtcctga
     5461 ttagcgggtt gtccggttcg ggcaaatccg tcgcactgcg ccaaatggaa gattcgggtt
     5521 atttctgcgt ggacaatttg cctttggaaa tgttgcccgc gctggtgtcg tatcatatcg
     5581 agcgtgcgga cgaaaccgaa ttggcggtca gcgtcgatgt gcgttccggc attgacatcg
     5641 gacaggcgcg ggaacagatt gcctatctgc gcggactggg gcacagggtt gaagttttgt
     5701 ttgtcgaggc ggaagaaagc gtgttggtcc gccggttttc cgagaccagg cgaggacatc
     5761 ctctgagcaa tcaggatatg accctgttgg aaagcttaaa gaaagaacgg gaatggctgt
     5821 ttccgcttaa ggaaatcgcc tactgtatcg acacttccaa gatgaatgcc caacagctcc
     5881 gccatgcagt ccggcagtgg ctgaaggtcg aacgtaccgg gctgctggta attttggagt
     5941 ccttcgggtt caaatacggt gtgccgaaca acgcggattt tatgttcgat atgcgcagtc
     6001 tgcccaaccc gtattacgat cccgagttga ggccttacac cggtatggac aagcccgttt
     6061 gggattattt ggacggacag ccgcttgtgc aggaaatggt tgacgacatc gaaaggtttg
     6121 ttacgcattg gttaccgcgt ttggaggatg aaagcaggag ctacgttacc gtcgccatcg
     6181 gttgcacggg aggacagcac cgttcggtct atattgtcga aaaactcgcc cgaaggttga
     6241 aagggcgtta tgaattgctg atacggcaca gacaggcgca aaacctgccg agccgttaat
     6301 cccattaaac aattatgccg tctgaaaccc cgcttttctg tttcagacgg catttcaaat
     6361 attgagaaga aaggaaagat atggcaatcc aatggtttcc cggtcatatg aacaaggcga
     6421 aaaaagccat cgccgagcgt gcaaaaagcg ttgatatggt gattgaaatg ctggacgcgc
     6481 gtatgcccgc ctccagcgaa aaccccctgc ttgcccagct ttccaaaggc aaacccaaac
     6541 ttaaaatcct aaacaaacaa gatcttgccg accccgaacg cacaaaggtc tggcttgacc
     6601 actacaacag ccgccccgac acgcgcgcca ttgccctcga ttcctccgaa accggcgcac
     6661 acggcaaaat cacccaagcc tgccgcgcga tgattcccca ccggcaaggc atagacaaac
     6721 ccttgcgcgt cttgatttgc ggcattccca acgtcggcaa atccaccctc atcaacggca
     6781 tgataggcaa aaaatccgcc aaaaccggca acgaacccgg catcaccaaa gccgaacaac
     6841 gccttttcct tgccgacgac ttctggctgt acgacacccc cggaatgctg tggccgaaaa
     6901 tcattgtcga agaaagcggc tacaacctcg ccgccggcgg ttcagtcgga cgcaacgcat
     6961 tggacgaaga agaagtcgcc ctcgaacttt tagactacct ccgccgccac tacctcccta
     7021 tgttgcaaga acgctaccaa gccgacaaag accccagcag ccactgggac gaaaacgttt
     7081 ggctcgaatg gatagccaaa aaacgcggcg cagtcctcag cggcggacgg atcaactacc
     7141 aaaaagccgc cgaaaacatc cttaccgact tccgcgaagg caaaatcggc agaatcaccc
     7201 tcgaaacgcc gaaccaatgg gaaacttggc tcaaaaaagc ccgtcagaaa gaagccgaac
     7261 tcaaagccat acgcgaagcc agaaaagcag agcgtaaagg gcagaagcct tcggaagcat
     7321 aaagaatgcc gtctgaaaaa tatttttcag gcagcttctc tctactccaa ccgatttcag
     7381 acggcatatc caaacccatg ccgtttcagc acggataccc gtatgaccga caaaatttct
     7441 cccgacgcgc tgattgaagc cgcactgctg acccaaaccg aaccgctgac cgaaaaatct
     7501 atgcgcgaat tgtgtgtgcc gccactgtcg caggacaaac tgattgatgt gttggcgcag
     7561 ttgaaaacgc gttggcagga tagggcgttg caactggtgc atacgcaaga gggctggcgt
     7621 tttcagattg ttcagacggc attcgagcgg ctgggcagcc tgcaagaaca gcgtgcgccg
     7681 cgctactccc gcgccgtgat ggaaacactg gcgattatcg cctaccagca gcccgtaacg
     7741 cgcggcgaca tcgaaggcat acgcggtgtg gcggtgtcgc agaacgtgat ccagaccttg
     7801 caggatcggg ggtggattga agtcatcgga catcgggaca cattgggaaa acccgcattg
     7861 tgggcaacaa cggcaacgtt tctcagcgat ttgcgcttgg acggtctgga agaacttcct
     7921 ccgctgaccg aactgggcga actggttttg cccgatttga tagaaatgcc gcctacggat
     7981 gaagaagagc cgacaaccgt accatccgat accctgccca actgaaattc caaatgccgt
     8041 ctgaaacgca cattgcttca gacggcattg caacaaataa gcagataaaa acaagcacta
     8101 agaaaaatta aggaaaaact tatttttaat ttaaaaaatc ttagttataa ttcgtatatc
     8161 taaagttgat attgcttttg tcggtagaat tgctaaggaa tcctcacgat gcttctaaca
     8221 ctttctttgc gtgattttgt cattgttgaa aatctgaatc tggattttca aagcggcttt
     8281 accgtattga ccggagaaac tggcgcgggc aagtccatta ctttggatgc gattggtctg
     8341 ctgttgggcg ataaagccga ttacagccaa gtccgcagcg gcgcaaaaga agcccaacta
     8401 tcggcactgt ttgatatttc ccacttgcct gttctaaaag aagaattgcg tgaacaagga
     8461 ttgttggatg acggcgggga agaacttagc atccgccgta ttatcgatgc caaaggcaaa
     8521 agccgaagct ttatcaacaa tcaggcatct accttggcgc aactcaaagc cgtcggcagt
     8581 cagcttatcg atatccatgg acaaaatgcc catcattcgc ttaatcagga agccgctcag
     8641 cgcgaattgt tggacgcatt tgcgggcagc agggcgcagg cggaaaccgt cagacagttg
     8701 tatcaaaact gggtcaatgc gaaaaaagcc cttcaagagg cgcaggaaca cgccgatgcc
     8761 gtcattatcg agcgggaacg tttggaatgg cagtttaacg aactgaacca gttggacatt
     8821 aaacaaggcg aatgggaagc tctcagccaa agccacgaca gccttgccca ttctgccgag
     8881 ctgttgcagg ctgccgaaga agtcggaagc aagattgacg gcgacaacgg catccaacgc
     8941 catatctatc aatgtcaaaa actattggcc aatctgcaaa acatcgagcc gcgctttgcc
     9001 gagagcctga atatgttggc aagcatcgaa gccgaattgg gcgaaatcag tgccaatatg
     9061 cgcgatgtgg caggtcgcag cgacatcaac cccaatgaat tggcggcaca ggaacagcgt
     9121 atgggcgaac tgatggggat agcgcggaaa taccgtatcg agcccgaaga gttgcctgcc
     9181 aagttggcag aaatcgaaga acgcctgcaa agcctgcaag ctgccgccga tttggacgcg
     9241 ctcgagcata atgttgccca caattttgcc gaatatcagg aagctgccca catcctttct
     9301 gccatgcgcc atcaggcggc agagcgtttg agcggcgaaa cgaccgagca tatgcaacac
     9361 cttgccatga aaggtgcacg tttcgacatc gtcctgttgc cctcgtcgcc gacggcacac
     9421 ggtttggagc aggttcaatt tcaagttgcc gccaacaaag gcaatccgcc ccgtccgctg
     9481 aataaagttg cctccggcgg cgaattggcg cgtatcagcc ttgccttaca ggttgttgcc
     9541 agccaatata cccaagttcc caccctgatt tttgatgagg tcgataccgg tattggaggg
     9601 ggagtggctg aaatggtcgg caaggcatta cgtgcgttgg gcagaaaaca tcaggtgctt
     9661 gccgttaccc atcttccgca agtcgcatcc tgcggcgaaa accactggcg ggtgcgcaag
     9721 cacagcgagg gagagcaaac cgtcagcgaa atcagtatat tggataaaat ccaacgggtc
     9781 gaagaggttg cccgtatgtt gggcggagaa gtcattaccg atacgacgcg gcaacatgcg
     9841 gcagaattgc tgcaacttgc gtcgaaaaat agtttatttt aaaatcaatc agttaaaaaa
     9901 taactaaaaa taaaagtcta aaacaataga cagaactcag ataaatccgt attatcacgc
     9961 tttcttaatc acttgaacaa gtgattgtgc tgcacccgta gctcagttgg atagagtatc
    10021 tggctacgaa ccagagggtc gggcgttcga atcgctccgg gtgcgccagt aagaaaatac
    10081 aatatgcgcc catcgtctag cggttaggac atcgcccttt cacggcggta accggggttc
    10141 gattccccgt gggcgtgcca attcaaaatg cctccgatta tatcggaggc atttctcatt
    10201 tctcatttct catttctcat ttctcatttc tcatttctca tttctcat
//
LOCUS       DAXHNP010000068        10034 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.068, whole genome shotgun sequence.
ACCESSION   DAXHNP010000068 DAXHNP010000000
VERSION     DAXHNP010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10034
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.068"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(135..1352)
                     /locus_tag="ACFM5C_001206"
     CDS             complement(135..1352)
                     /locus_tag="ACFM5C_001206"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFC6068908.1"
                     /translation="MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMS
                     GETNRLVALAHEMQEHPDPRELDVVLSTGEQVTIGLLAMALKDIGVDAKSYTGWQVAL
                     KTDTAHTKARIESIDDEKMRVDLADGKVVIVAGFQGISSEGNISTLGRGGSDTSAVAL
                     AAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEF
                     AGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPG
                     VAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAAS
                     IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYME
                     LATRVLHKAFNLG"
     gene            complement(1554..2282)
                     /gene="rph"
                     /locus_tag="ACFM5C_001207"
     CDS             complement(1554..2282)
                     /gene="rph"
                     /locus_tag="ACFM5C_001207"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0009022 - tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HFC6068909.1"
                     /translation="MPDYIRISRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTA
                     SIDENVPPFLRGKNQGWVTAEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLR
                     AVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIRE
                     AVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELG
                     KLVALAQKGIGELLQHQQNALSAA"
     gene            complement(2364..2828)
                     /locus_tag="ACFM5C_001208"
     CDS             complement(2364..2828)
                     /locus_tag="ACFM5C_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HFC6068910.1"
                     /translation="MYKHLVVAVDGSETSINALKHAAELAGVNGARLTLVHVANPAEY
                     MALAPEFLQHESYEAAAVAQGNEVLDAAERTARELGVENTVKHLLVANKGAREMAQDL
                     VDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA"
     gene            3045..3821
                     /locus_tag="ACFM5C_001209"
     CDS             3045..3821
                     /locus_tag="ACFM5C_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6068911.1"
                     /translation="MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWA
                     VEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERVAQINPECQVF
                     EIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNP
                     ALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKANMRVPCVYSTENIVPPQSREAC
                     SADAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK"
     gene            4066..4920
                     /locus_tag="ACFM5C_001210"
     CDS             4066..4920
                     /locus_tag="ACFM5C_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HFC6068912.1"
                     /translation="MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSF
                     QGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIEAYQFDLAAEYLLMAAMLIEI
                     KSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLE
                     IAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNGHGIC
                     RFHDLFNPEQGAAYVVVNFIALLELAKEGLVGIVQEVGFGEIRISLNHEGAHSDGISG
                     TRGGRDVF"
     gene            4961..6169
                     /gene="pncB"
                     /locus_tag="ACFM5C_001211"
     CDS             4961..6169
                     /gene="pncB"
                     /locus_tag="ACFM5C_001211"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFC6068913.1"
                     /translation="MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVY
                     PLADIREDLEAELDALCQLRFTHDELDYLRSLRFIKSDFVDYLELFQLQRRFVEIGTD
                     DKDRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEI
                     AAAQNPDEPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVFLAKKLGITP
                     IGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLY
                     FAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKD
                     RFKTGFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNSTFLAYLRQ
                     VFDVPEPETP"
     gene            6261..7979
                     /gene="argS"
                     /locus_tag="ACFM5C_001212"
     CDS             6261..7979
                     /gene="argS"
                     /locus_tag="ACFM5C_001212"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFC6068914.1"
                     /translation="MNLHQTVEHEAAAAFAAAGIAGSPVVLQPTKNAEHGDFQINGVM
                     GAAKKAKQNPRELAQKVADALAGNAVIESAEVAGPGFINLRLRPEFLAQNIQTALNDA
                     RFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVLAFMGNTVVRQNHVG
                     DWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPAFADTAREYVVKLQG
                     GDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQPVVDDLVQKGL
                     AVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRVGTLHADRLLY
                     VVDHRQALHFEQLFTTSRKAGYLPENVGAAFVGFGTMMGKDGKPFKTRSGDTVKLVDL
                     LTEAVERAAALVKEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSNYVFDWDAMLS
                     FEGNTAPYLQYAYTRVQSVFRKAGEWDATAPTVLSEPLEKQLAAELLKFEDVLQSVAD
                     TAYPHYLAAYLYQIATLFSRFYEACPILKAESASRNSRLQLAKLTGDTLKQGLDLLGI
                     DVLDVM"
     gene            8517..9935
                     /locus_tag="ACFM5C_001213"
     CDS             8517..9935
                     /locus_tag="ACFM5C_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HFC6068915.1"
                     /translation="MNIHTLLSKQWTLPPFLPKRLLLSLLILLAPNAMFWVLALLTAT
                     ARPIVNLDYLPAALLIALPWRFVKIAGVLAFWLAVLFDGLMMVIQLFPFMDLIGAINL
                     VPFILTAPAPYQIMTGLLLLYMLAMPFVLQKAAAKTDFRHIAACAAVVAAAGYFTGHL
                     SYYDRGRMANIFGANNFYYAKSQAMLYTVSQNADFITAGLVDPVFLPLGNQQRAATHL
                     NEPKSQKILFIVAESWGLPANPELQNATFAKLLAQKDRFSVWESGSFPFIGATVEGEM
                     RELCAYGGLRGFALRRAPDEKFARCLPNRLKQEGYATFAMHGAGSSLYDRFSWYPRAG
                     FQEIKTAENLIGKKTCAIFGGVCDSELFGEVSAFFKKHDKGLFYWMTLTSHADYPESD
                     IFNHRLKCTEYGLPAETDLCRNFSLHTQFFDQLADLIQRPEMKGTEVIIVGDHPPPVG
                     NLNETFRYLKQGHVAWLHFKIK"
BASE COUNT         2298 a         2963 c         2541 g         2232 t
ORIGIN      
        1 ttaatccact ataaatttaa tccactatat tttttgttcc aaagtcaaaa tatgccgtcc
       61 gaacattcgg gcggcagaca aaacggcact gcccgataaa ggcagtgccg ttgtccgttt
      121 caaaccgtga aacatcagcc caaattaaag gctttatgca ataccctggt tgccagttcc
      181 atgtattttt catcaatcaa tacggaaact ttgatttcgg aggtggaaat catttggatg
      241 ttgataccct cttcggcgag cgtgcggaag attttggcgg ctacgccgac gtgcgaacgc
      301 atacccaaac cgactgcgga gactttgcac acggtgtcgt cgccatcaat agaagccgcg
      361 ccgatactgt cttggcgttc cgacaggatt tccaaagtct gcttgtaatc gccgcgcggt
      421 acggtaaagg aaaaatcggt tgtgccttcg ctgccgacat tttggataat catatcgact
      481 tcgatgttgg catcggcaac cgcgcctaaa atctgatagg cgacgccagg tttgtcgggt
      541 acgccgcgca cgttgatgcg ggcttggttt ttatcgaatg cgataccggt tacggcagct
      601 ctttccatgt tgtcgtcctc ttcaaaggta attaaggtgc cattgccgcc gtcttgcagg
      661 ctgctcagta cgcgcaggcg cactttgtat tttccggcga attctactga acggatttgc
      721 aaaactttcg aaccgaggct tgccagttcg atcatttctt caaatgtaac cgtatccatg
      781 cggcgcgctt cgggtacgac gcgggggtcg gtggtgtaaa cgccgtctac atcggtatag
      841 atttggcatt cgtccgcttt gagggctgcg gcgagcgcaa cggcggaagt gtcggaaccg
      901 ccgcgtccga gcgtggaaat attgccttca ctgctgatgc cttggaagcc ggcaacgatg
      961 acgactttgc catcggcgag gtcgacgcgc attttttcgt catcaatgct ttcgatgcgg
     1021 gctttggtgt gggcggtatc ggttttgagg gcgacctgcc agcctgtgta gcttttggca
     1081 tccacgccga tgtctttcaa tgccatcgcc aaaaggccga tggttacttg ttcgccggtg
     1141 gacaaaacca cgtccaattc gcgcggatcg ggatgctcct gcatttcgtg cgccaacgcg
     1201 accaggcggt tggtttcacc gctcatggcg gatacgacga cgacaatgtc gtgtccttcg
     1261 gcgcgggctt tggcgacacg tttggccacg tttttaatgc gttcgggcga gcctacggat
     1321 gtgccgccgt atttgtgtac gattaacgcc atgtttcgtg ctttcttgtg tgggattggt
     1381 cgggcagcat ggtttgctgg aaaagcggct attattacta ttttttacat gaagttcaag
     1441 aacggactgc gctttcccgc ctgccgtttg acagcggtca gcgaaaaacc tgttctttca
     1501 gattgttgac aaaatgccgt ctgaacggtt ttcagacggc atccggacga caatcaggcg
     1561 gcggacaacg cattttgctg gtgttgcagc agttcgccta tgcctttttg cgccagtgca
     1621 accagtttgc ccaattcgtc caaactgaac ggcgcgtctt ccgccgtacc ttggatttcg
     1681 atgatttttc ccgatgcggt catgacgata ttcacatcac tgtcgcaacc ggagtcttcg
     1741 ggataatcca aatccaaaag cggcacgccg ttcactacgc ctactgacac agcggcaacg
     1801 gcttcgcgga tggggttttc actcaaaatg ccgtctgaaa ccagtttgcc gacggcgatt
     1861 tgcagcgcga caaacgcacc ggtaatcgaa gccgtacgcg taccgccgtc tgcctgaatc
     1921 acgtcgcagt caatcaagat ttggcgttcg ccgagttttt ccatatccac gaccgcgcgc
     1981 agcgaacgcc cgataaggcg ttggatttct tgtgtgcgcc cggactgttt gcccgccgaa
     2041 gcttcgcggc gcatccggga agcagttgag gcaggcagca tcccgtattc cgccgttacc
     2101 cagccttggt ttttaccgcg cagaaacggc gggacgtttt catctatgga agcggtacaa
     2161 atcactttgg tattgccgca ttcaataagg cacgaaccgt ccgtatgcgg caggaaatga
     2221 ggggtgattt tgatatcgcg caggctgtcg gcggcgcgcg agatgcggat gtaatcaggc
     2281 atactgccct cccgttaaaa acagataaat taaaaagcct taaatatgaa aaatcacatt
     2341 taaggccttc aaactgaaaa tttctacgcc tcttcggctt tgctgcggat aatcaaaagc
     2401 ggcaggtggc tttggcgcat taccgtttcg gcaaaactac ccattaaaag gtgcatcagt
     2461 ccggtacgtc cgtgcgtacc caacaccagc aggtcggcac cgttttcatc ggcataatca
     2521 accaaatcct gcgccatttc acgcgcaccc ttattggcaa ccagcaggtg tttgacggta
     2581 ttttccacac ccagttcccg ggcggtgcgc tcggcggcat ccaaaacttc gttgccttgc
     2641 gcgacggcgg cggcttcgta gctttcgtgt tgcaaaaatt cgggggcgag cgccatatat
     2701 tcggcaggat tggcaacgtg taccaaagtc agacgcgcac cgttgacccc ggcaagctcg
     2761 gcggcatgtt tcagggcatt gatggacgtt tcactgccgt caacggcaac aaccaaatgt
     2821 ttgtacatat cgtattctcc ttttgcaccg cctcgcggtg ccctcttgtc ggatgggcgc
     2881 agggacagtt tgcgctgttt cattatagac ccgccgtcgg gctttataca acagccgaac
     2941 agcccgaccg ctttccagta taatatgccg cttccgtgca gtcaggcatt ttttgccggc
     3001 tttcgttcac tttttgattt gacgcaatct tgcaggattc gaccatgtcc gacaacgctt
     3061 tgacctcttc gcgacgcttc ggcggcatcg ccagactcta cggagactct gccttggcgc
     3121 acttttcaca ggcacacgtc tgcgtagtcg gcgtgggcgg tgtcggctcg tgggcggtcg
     3181 aggctttggc gcggacgggc atcggacgtt tgactttgat tgatttggac aacgttgccg
     3241 aatcgaatgt caaccgccag ctgcacgccc tgaccggaga cttcggcaaa gcaaaagtta
     3301 ccgccttgcg cgaacgcgtc gcccaaatca acccagaatg ccaagtgttt gaaattgaag
     3361 atttcgttac cgaagacaat ttgccggaat acttcggaaa aggttttgat ttcgtcatcg
     3421 acgcgatcga ccaagtgcgc gtcaaagcag caatggcggc ttattttgtg gaacgcaaac
     3481 aaccgtttgt cctcagcggc ggcgcgggcg gacaaaaaaa tccggcgtta atccaaaccg
     3541 ccgatttgag ccgcgtaacc cacgacccgc tgcttgccaa cctgcgctac accttgcgga
     3601 aacgctacgg attcagccgc gatacgaaag caaatatgcg cgtgccttgc gtgtattcga
     3661 ccgaaaatat cgtgccgccg cagtctaggg aggcttgttc ggcagatgcc gctccgcaag
     3721 gcttgtcgtg cgccggctac ggtgcaagca tgctcgttac cgcttcgttc gggctatatt
     3781 gcgcacaggc ggcggtggaa cacatcgcag acaaaaaata agcaatgccg tctgaaacag
     3841 gattcagacg gcatttgaac aaacgcggca atcaagctgt cggttcagaa aaaccaacat
     3901 cggcacgcct aaaaccgtat tcacaacctg ctccttttca aaacatttgc atttaaaagc
     3961 cgttataatg ccgtctgaac atttgcccga ccacattata cgtgaatgtc ggcagattgt
     4021 tttcttttgt aaacttatat taaaatccac ttaccgattc acgccatgcc gcccatccct
     4081 gccccatccg caccatccga gcacactgtc gcatgggtat tcggccaacc cgttaccgat
     4141 ttgccgcagg atttgtttat cccacccgac gcgctgaaag tcgtattggg cagttttcaa
     4201 ggccctttgg atctactgct gtatctgatc cgcaagcaga acatcgatgt tctcgatatt
     4261 ccgatggtga agattaccga gcagtatctg cactacatcg cccaaataga agcctatcag
     4321 tttgatttgg cggcggaata cctgcttatg gcggccatgc tgattgaaat caaatcgcgc
     4381 ctgctgctgc cgcgtaccga aaccgtcgaa gacgaagaag ccgacccgcg tgccgagttg
     4441 gtgcgccgcc tgctggctta cgaacagatg aagctggcgg cgcagggttt ggacgcgctg
     4501 ccccgagccg gacgggattt cgcgtgggct tacctgccgc tggaaattgc cgtcgaagcc
     4561 aagctgcccg aagtctatat taccgacttg acgcaagcgt ggctgggtat tttgtctcgg
     4621 gcaaaacaca cgcgcagcca cgaagtaatc aaagaaacca tctccgtgcg cgcgcaaatg
     4681 acggcaatcc tgcgccgttt gaacggacac gggatatgca ggtttcacga cctgttcaat
     4741 cccgaacagg gcgcggctta cgtggtcgtc aacttcatcg cactgttgga gcttgccaaa
     4801 gaaggtttgg tcggaatcgt acaggaagtc ggtttcggag aaatccgaat cagcctcaat
     4861 catgaggggg cacattcaga cggcatttcc ggcacacggg gcgggcgcga tgtgttctaa
     4921 tacgccccaa gccgccacca aaaatcggga gacacgccat atgaccggca tcatacattc
     4981 gctgcttgac accgacctct acaaattcac tatgctgcaa gtggttctgc accagtttcc
     5041 gcagacgcac agcctttacg aattccgctg ccgcaacgcc tcgaccgtct atccgcttgc
     5101 cgacatcagg gaagacttgg aagccgaact cgacgcgctc tgccaactac gcttcaccca
     5161 cgacgaactc gactacctcc gtagcctgcg tttcattaaa agcgactttg tcgattatct
     5221 cgaactcttc cagctccaac gccgctttgt cgaaatcggc acagacgata aagaccgtct
     5281 gaacatccgc atcgaaggtc cgatgataca ggcgatgttt tttgaaatct tcatcctcgc
     5341 cattgtcaac gaactttact tccgccgcct ggaaacccct gcagtcatag aagaaggcga
     5401 acgccggctt caagccaaag ccgcgcgcct caaagaaatc gccgccgcac aaaaccccga
     5461 cgaaccgccc ttcctgattt ccgacttcgg cacgcgccgc cgctacaagc tcgcgtggca
     5521 ggaacacgtc atccgcaccc tgctcgaagc cgccccaagc atcgtgcgcg gcaccagcaa
     5581 tgtctttctc gccaaaaaac tcggcatcac ccccatcggc accatggcgc acgagttcct
     5641 ccaagccttc caggccctcg acgtacgcct gcggaatttc caaaaggccg cgctcgaaag
     5701 ctgggtgcac gaataccggg gcgatttggg cgttgccctg accgacgtgg tcggtatgga
     5761 tgccttcctg cgcgatttcg acctctattt cgccaaactt ttcgacgggc tgcgccacga
     5821 cagcggcgac ccttacgttt ggggcgacaa agcctacgcc cactatcaaa agctcaaaat
     5881 cgacagccgc accaaaatgc tgaccttctc cgacgggctg gacatcgaac gctcttgggc
     5941 attacaccaa tatttcaaag accgcttcaa aaccggcttc ggcatcggca ccaacctgac
     6001 caacgatatg gggcatacgc ctttgaatat cgtcttgaaa ctggtcgaat gcaacgggca
     6061 gtccgtcgcc aagctgtccg actctccggg caaaaccatg accaacaaca gcaccttcct
     6121 cgcctacctg cgccaagtgt tcgacgtacc cgaacccgaa acgccgtaaa ccggcagaaa
     6181 aagcgcacaa ttcctgtttc tgccgcataa aatcttttaa aataccgcct gatttgaatt
     6241 taaccgaaag accgaacttc atgaacctac atcaaaccgt cgaacacgaa gccgccgccg
     6301 cctttgccgc cgcaggcatc gccggcagcc ccgttgtttt gcagccgacc aaaaatgccg
     6361 aacacggcga tttccaaatc aacggcgtga tgggtgcggc gaaaaaagcc aaacaaaacc
     6421 cgcgcgaact ggcgcaaaag gtcgccgacg cattggcagg caacgccgtc atcgaaagcg
     6481 cggaagtcgc cggtcccggt tttatcaacc tgcgcctgcg ccccgaattt ctcgcgcaaa
     6541 acattcagac ggccttgaac gacgcgcgtt tcggcatagc gaaaaccgac aaaccgcaaa
     6601 ccgtcgtcat cgactattcc tcgcccaatc tggcgaagga aatgcatgtc ggtcacctgc
     6661 gttccagcat catcggcgac agcatttcgc gcgtgttggc atttatgggc aacaccgtcg
     6721 tccgtcaaaa ccacgtcggc gactggggta cgcagttcgg catgttggtc gcttatttgg
     6781 tcgagcagca aaaagacaat gccgcgtttg agctggcgga tttggagcag ttttaccgcg
     6841 ccgccaaagt gcgctttgac gaagatcctg ccttcgccga caccgcgcgc gaatacgttg
     6901 tgaagctgca aggcggcgat gaaaccgttt tggcattgtg gaaacagttt gtcgatattt
     6961 cgctctcgca cgcccaagcc gtttacgaca cgctgggctt gaagctgcgc cccgaagacg
     7021 tggcgggcga atcgaagtac aacgacgatt tgcagccagt ggtcgatgat ttggttcaaa
     7081 aaggtctggc ggtcgaagac gacggcgcga aagtcgtatt cttggacgag ttcaaaaaca
     7141 aagaaggcga acccgccgcg tttatcgtgc aaaaacaagg cggcggcttc ctttatgctt
     7201 ccaccgactt ggcgtgtttg cgctaccgtg tcggcacgct tcatgccgac cgcctgctgt
     7261 acgtcgtcga ccaccgccaa gccctgcact ttgagcaact ctttaccact tcccgcaaag
     7321 caggctatct gccggaaaac gtcggcgcgg catttgtcgg cttcggcacg atgatgggca
     7381 aagacggcaa accgttcaaa acacgcagcg gcgacactgt aaaactggtc gatctgctga
     7441 ccgaagccgt cgaacgcgcc gccgctttgg tgaaagagaa aaatcccgaa ttgggcgcgg
     7501 acgaagccgc caaaatcggc aaaaccgtcg gcatcggcgc ggtcaaatac gccgacttga
     7561 gcaaaaaccg caccagcaat tatgtgttcg actgggacgc tatgctttcg tttgaaggca
     7621 acaccgcccc ctacctgcaa tatgcctaca cccgcgtgca aagcgtgttc cgcaaagccg
     7681 gtgaatggga cgcaaccgca ccgactgttt tgagcgaacc gctggaaaaa cagcttgccg
     7741 ccgagctgct gaaattcgaa gacgtgctgc aaagcgtggc ggacacggcg tatccgcact
     7801 acctcgccgc ctacctctat caaattgcga ccctgttcag ccgcttctac gaagcctgtc
     7861 cgatactcaa agccgaaagc gcaagccgca acagccgcct gcaactggcg aagctgaccg
     7921 gcgacacgct gaaacaaggc ttggatttgc tgggcatcga tgtgttggac gtaatgtaaa
     7981 accgcaccgc ccgattgcgg acaacagcct cgccatcctt atccgaatct gaaaaaagcg
     8041 gcgcgataca ccgtatccgc cgcccctccc aaaatgcgaa acaaacaaac gccaagcaag
     8101 caagcaagca agcaagcaag caagcaaaaa attataaccc ccttcctgcc gacgcacgca
     8161 ctttccgcgc ggcgcattcc ccttttcccg cccctcaaat ccgccttttc ttcaggcagg
     8221 gtttcagccc gcctcttttc cctgttttcc tttccccgac acgcgtgcgc gccccctgcc
     8281 gcactgtgct gcactttcgc gcccggacgg catcgttccg ccatccggtt ctctgtttta
     8341 aatacccctg tttcagaaag aaatgcagat gtttcaacac acaggacgac acataaagca
     8401 ccgccctatg tgttgccctg atttggaagg ggttacgcct cccaaataaa gtctgatcct
     8461 gccgccccga aggacagatg tccgagtggc gaagtttcaa ccgaaaagga aatacgatga
     8521 atattcacac cctgctctcc aaacaatgga cgctgccgcc attcctgccg aaacggctgc
     8581 tgctgtccct gctgatactg ctggccccca atgcaatgtt ttgggttttg gcactgctga
     8641 ccgccaccgc ccgcccgatt gtcaatttgg actatcttcc cgccgcgctg ctgatcgccc
     8701 tgccttggcg tttcgtcaaa attgccggcg tattggcgtt ttggctggcg gttttgtttg
     8761 acgggctgat gatggtgatc cagctcttcc cttttatgga cctcatcggc gccatcaacc
     8821 tcgtcccctt catcctgacc gcccccgccc cttatcagat aatgaccggg ctgttgctgc
     8881 tgtatatgct ggcgatgccg tttgtgttgc agaaagccgc cgccaaaacc gacttccgac
     8941 acattgccgc ctgtgccgcc gttgtggcgg cagccggcta tttcactggc catttgagtt
     9001 actacgaccg ggggcggatg gccaatatct tcggcgcaaa caacttctac tacgccaaaa
     9061 gtcaggcgat gctctacacc gtcagccaga atgccgactt tattaccgcc ggcctggtcg
     9121 atcccgtctt cctccccttg ggcaatcaac agcgtgccgc cacgcatctg aacgagccga
     9181 aatctcaaaa aatcctcttt atcgtcgccg aatcttgggg gctgccggcc aatcccgaac
     9241 ttcaaaacgc cacttttgcc aaactgctgg cgcaaaaaga ccgtttttcg gtttgggaaa
     9301 gcggcagttt tccctttatc ggcgcgacgg tcgaaggcga aatgcgcgaa ctgtgtgcct
     9361 acggcggttt gcgcgggttc gcactgcgcc gcgcgcccga cgaaaaattt gcccgctgcc
     9421 tccccaaccg tttgaaacaa gaaggttacg ccacctttgc gatgcacggc gcgggcagtt
     9481 cgctttacga ccgcttcagc tggtatccga gggcgggctt tcaagaaatc aaaaccgccg
     9541 aaaacctgat cggtaaaaaa acctgcgcca ttttcggcgg cgtgtgcgac agcgagctgt
     9601 tcggcgaagt gtcggcattt ttcaaaaaac acgacaaggg actgttttac tggatgacgc
     9661 tgaccagcca cgccgactat cccgaatccg acattttcaa ccacaggctc aaatgcaccg
     9721 aatacggcct gcccgccgaa accgacctct gccgcaattt cagcctgcac acccaattct
     9781 tcgaccaact ggcggatttg atccaacgcc ccgaaatgaa aggcacggaa gtcatcatcg
     9841 tcggcgacca tccgccgccc gtcggcaacc tcaatgaaac cttccgctac ctcaaacagg
     9901 ggcacgtcgc ctggctgcac ttcaaaatca aataacaaca atgccgtctg aacgcaccaa
     9961 cagccttcag acggcatttt gcagacagac cgacccttca agcccacttt tttcatcatc
    10021 tccgataaat tgct
//
LOCUS       DAXHNP010000069         9793 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.069, whole genome shotgun sequence.
ACCESSION   DAXHNP010000069 DAXHNP010000000
VERSION     DAXHNP010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9793
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.069"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(9..1304)
                     /locus_tag="ACFM5C_001214"
     CDS             complement(9..1304)
                     /locus_tag="ACFM5C_001214"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HFC6068916.1"
                     /translation="MIRPDFQEYLPSYYFSSVNPHTVYPKLQCRLKTDTCIIGGGLSG
                     LCTALLLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMGEIEKQVGLEQAQWFW
                     QQSLQAVELVDERVRKHAIDCDWQRGYATVAVRPQHWEELQQWHEHAQRHYGASHYQL
                     WDKAELKQQLDSDMYQGAQFDPLSGHLHPLNYTLGIARAAAEAGAQIFEQSPMTCIEP
                     HQNGWLVYTPEGSVECKNVVYAVNTYAGLNPIFKPLERKAIAVSTFIIATEPLGARAK
                     GLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPARMTELVRQDMLKVFPQL
                     ADVKIEYSWGGECDITANLVPHFGRLAPNVFYTQGYSGHGMAITGIAGLAVAEAILGD
                     ECRLKPFEQLRQPNIILQPFLRKLGSFLGSKYYQWKDSR"
     gene            complement(1430..2317)
                     /locus_tag="ACFM5C_001215"
     CDS             complement(1430..2317)
                     /locus_tag="ACFM5C_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6068917.1"
                     /translation="MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGG
                     FSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVLGTLAGYAMARIKRFRGSTLFAG
                     MISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
                     TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLV
                     ITSFLSGPGSSTLPQVIFSKIKLGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATRR
                     DREAAEAYRQEKLAAEKAH"
     gene            complement(2317..3282)
                     /locus_tag="ACFM5C_001216"
     CDS             complement(2317..3282)
                     /locus_tag="ACFM5C_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6068918.1"
                     /translation="MNLNKLKNKLFRRPGQRVVIAVPYIWLLVLFLIPFAIVLKISFA
                     EQEIAIPPFTPLTSIDEDLGRLNITISYQNYADIFQNFWHTLNPFGDSENSNIYLMTY
                     WSSIKTALMTTVICLLVGYPTAYAISRANPSVRNGLLLAIMLPFWTSFLLRVYAWMGL
                     LGHNGIVNNLLIKMGIISEPLDLFYNAFSLNLVMVYAYLPFMILPLYTQLVKLDNRLL
                     EAASDLGAGPVKSFLTITLPLSKTGIIAGFMLVFVPAVGEFVIPELVGGSENLMIGKV
                     LWQAFFDQNNWPLASAVAVVMVALLVVPIALFQHYENRELEEGAK"
     gene            complement(3298..4422)
                     /gene="potA"
                     /locus_tag="ACFM5C_001217"
     CDS             complement(3298..4422)
                     /gene="potA"
                     /locus_tag="ACFM5C_001217"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HFC6068919.1"
                     /translation="MTATTASSTKPYLQIQGLVKKFGDNYAVDNIDLDIYQHEIFALL
                     GSSGSGKSTLLRMLAGMESPNQGKIILDGQDITKLAPYDRPINMMFQSYALFPHMTVE
                     QNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR
                     PKILLLDEPLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSD
                     GQLQQVGTPSDVYDYPNSRFTAEFIGETNIFDGVVIEDHADYAVIECEGLENHVRIDH
                     GLGGPSEQDLWVSIRPEDIDLYKEKPEYLGDYNWAKGTVKEIAYLGSFAIYHIKLANG
                     RVVKSQVPAPYWYVRNITPPTWDETVYISWPENQPTPLFR"
     gene            complement(4617..4724)
                     /locus_tag="ACFM5C_001218"
                     /pseudo
     CDS             complement(4617..4724)
                     /locus_tag="ACFM5C_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(4803..5072)
                     /gene="rpsO"
                     /locus_tag="ACFM5C_001219"
     CDS             complement(4803..5072)
                     /gene="rpsO"
                     /locus_tag="ACFM5C_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFC6068920.1"
                     /translation="MALTVEQKAQIVKDFQRKEGDTGSSEVQVALLTFRINDLTPHFK
                     ANPKDHHSRRGLLKMVSQRRRLLAYLRRTQPDTYRALITRLGLRK"
     gene            complement(5295..6230)
                     /gene="secF"
                     /locus_tag="ACFM5C_001220"
     CDS             complement(5295..6230)
                     /gene="secF"
                     /locus_tag="ACFM5C_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFC6068921.1"
                     /translation="MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVE
                     FTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQL
                     SNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
                     AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRK
                     PAMRGHAVPEVIDNAITATMSRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVF
                     GIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV"
     gene            complement(6234..8087)
                     /gene="secD"
                     /locus_tag="ACFM5C_001221"
     CDS             complement(6234..8087)
                     /gene="secD"
                     /locus_tag="ACFM5C_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFC6068922.1"
                     /translation="MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAII
                     INEQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITA
                     LNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
                     EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVN
                     KVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTAT
                     LELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSF
                     DQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGR
                     VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI
                     VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNV
                     LINERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAV
                     VHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE"
     gene            complement(8299..8565)
                     /gene="yajC"
                     /locus_tag="ACFM5C_001222"
     CDS             complement(8299..8565)
                     /gene="yajC"
                     /locus_tag="ACFM5C_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFC6068923.1"
                     /translation="MNQAVAQFAPLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGD
                     KVVLAAGFKGKVTRVGEQFFTVDIGQGTKIEVEVERNAIAAKVD"
     gene            8693..>9793
                     /locus_tag="ACFM5C_001223"
     CDS             8693..>9793
                     /locus_tag="ACFM5C_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HFC6068924.1"
                     /translation="MSLTRLILKFYALLRLFLGKNARTAWISHPACAGHEPGANHPDS
                     PDRILCIEQALRRAGIWQHLQTIEAEEISDTRLALVHSSKYLNRLESCLPQKGKISRL
                     DNDTAISTGSLSAARFAAGSAVQAVDMVMNRKAWHAFCAARPPGHHAGSGKAGGFCLL
                     NNVAAGVMHAIAEYRLKRIAVIDFDVHYGDGTAEIFKDDPRILFFNLFETDLFPFPEN
                     NDMPDGGNMVHLPLPPGTGSRTFREAVRRQWLPRLAAFKPELVLLSAGFDAHRLDESG
                     RLNLHEADFAWLTHKIIQTASGCPGKIVSVLEGGYTLEPLAQSAAEHIRVLAGLGKSD
                     AATAYQKTLDPTKKRFAKPKTGQVRQPTQSDRY"
BASE COUNT         2504 a         2593 c         2435 g         2261 t
ORIGIN      
        1 tgcgacgctt aacggctgtc tttccactga taatatttcg agccgaggaa agaaccgagc
       61 tttctcaaaa acggttggag gatgatattc ggctggcgca actgctcaaa cggcttcaga
      121 cggcattcgt cccctaaaat tgcttcggca accgccagac ctgcaatgcc tgttatcgcc
      181 atcccgtgtc cggaataacc ttgcgtataa aaaacattcg gggccaaacg tccgaaatgc
      241 gggacaaggt tggcggtaat atcgcactcc ccgccccacg aatattcgat tttgacatcg
      301 gcaagctgcg gaaaaacttt aagcatatct tggcggacaa gctcggtcat acgcgcagga
      361 ttgtcgataa actcgttatc cttaccgccg aaaagcagtc tgccgtccgc gctgaggcgg
      421 taataatcca aaatatggcg gttgtcgcat acagccatat tgttgcggat aagccctttt
      481 gcgcgcgccc ccaagggttc ggtggcaata ataaaggtgc taacggcaat cgccttacgc
      541 tccaaaggct tgaatatcgg attcaaaccg gcataggtat tgacagcata gaccacattt
      601 ttgcactcga cgctgccttc gggcgtgtaa accagccaac cgttttgatg cggttcgatg
      661 cacgtcatcg gggattgctc gaaaatctgc gcaccggctt cggcagcggc acgagcgatg
      721 cccaaagtgt aattgagcgg atgcaggtgt ccggataagg ggtcgaattg tgccccttgg
      781 tacatatcgc tgtcaagctg ctgtttcaac tcggctttat cccaaagttg ataatgactc
      841 gcaccgtaat gccgttgggc gtgttcatgc cactgctgca actcttccca atgctgcgga
      901 cggacggcaa ccgtggcata accgcgctgc caatcgcaat caatggcatg tttgcggacg
      961 cgttcgtcca ccagttcgac cgcctgcaaa gactgttgcc aaaaccattg cgcctgctcc
     1021 aagccgacct gtttttcaat ttcccccata ccgcaggcgt aatcgctgat aacctgcccg
     1081 ccactccgtc ccgacgcgcc gaaaccgata cgcgcggctt ccaacacaac cgtttcatgt
     1141 ccctgctccg ccaagagcaa tgcagtgcac aaaccactca atccgccgcc gatgatacag
     1201 gtatcggttt tcagacggca ttgaagtttc ggataaacag tatgaggatt aaccgaacta
     1261 aaataataag aaggcagata ttcttgaaaa tcaggacgaa tcattgtgtt tgctttatcg
     1321 ggtatatttt cagacggcat gatatggttt gccgtaccat gccgtctgaa cgggaaatta
     1381 ctttaagaaa acaggctgac ctgataatgc ggtcagcctg ccctgtcggt caatgcgctt
     1441 tctcagcagc cagtttttcc tggcggtagg cttctgccgc ttctcggtca cgcctggtcg
     1501 cctgcctcat catccaataa ttgacgatga tgaccaatgt tccgatgatg ccgatcagga
     1561 tggttgccaa aacgttcatc tgcggatcaa gacccagctt gattttggag aaaatcacct
     1621 gcggcaatgt ggatgaaccg gggccggaga ggaatgaggt aattaccaaa tcatccaaag
     1681 acagggtaat gccgagcaga aagcctgaag cgatggcagg ggcaatcaaa ggcaaagtga
     1741 tgacaaaaaa gattttcagc ggacgcgcgc ccaaatccat tgcggcttct tcgagcgatt
     1801 ggtcaagctc aaccagacgc gaacggataa caacggtaat gtacgccata cacagcgtcg
     1861 tatgtccgag gaagatggtg aaaaagccac gatcgaagta gagatgttgt aaccattcgc
     1921 tgccctgcaa aaatatctgt acctgaataa tcagcagcag catagacaga ccggtaatca
     1981 cgtcgggcat caccataggt gcggaaatca taccggcgaa caaggtactg ccgcgaaaac
     2041 gtttaatccg cgccatcgca tagcctgcca gcgtgcccaa aacgacggca gcaagcgaag
     2101 acacaacggc aatccgcagc gacagccaag cggcttccaa gatggtgtcg ttttccagca
     2161 atgcgccgta ccacttggtc gaaaagccgc cccaaacggt taccagcttg gattcgttaa
     2221 acgaatagat gaccaaaaca accagcggga tatacagaaa cgccagcgac agtgccaaca
     2281 tcagtttcaa gaaccaagat aatttggatt tctgcattat ttggctcctt cttccaattc
     2341 gcggttttca taatgctgaa acagggcaat cggcacgacc agcagcgcga ccatcacgac
     2401 ggcgacggcg gaagccagcg gccagttgtt ttgatcgaag aacgcctgcc acaagacttt
     2461 accaatcatc aggttttccg aaccgccgac cagctcggga atgacgaact cgccgacagc
     2521 agggacgaaa accagcatga agcctgcaat aatgccggtt ttcgacaaag gcagggtaat
     2581 cgtcaagaac gatttgaccg gccccgcgcc caaatcggaa gccgcttcaa gcaggcggtt
     2641 gtcgagtttc accagttgcg tgtatagcgg cagaatcata aacggcagat aggcgtaaac
     2701 catcaccaaa ttgagcgaaa aggcattgta gaacaaatcc aaaggctcgc tgataatacc
     2761 cattttaatc aacaggttgt ttacaatacc gttatgcccg agcagaccca tccacgcata
     2821 gacgcgcaac aggaacgatg tccaaaaggg cagcataatg gcaagcagca aaccattgcg
     2881 gacagaagga ttggcacgag aaatcgcata ggcggtcgga taaccgacca acaggcaaat
     2941 cactgtcgtc atcaatgcgg ttttgattga agaccagtag gtcatcagat agatattgct
     3001 gttttcactg tcgccgaacg ggttaagggt atgccaaaaa ttttggaaaa tatcggcata
     3061 gttttgataa ctgatggtga tattcagacg acctaaatct tcgtcgatgc tggtcagcgg
     3121 cgtaaacggc ggaatggcga tttcttgttc ggcaaagctg attttcagca cgatggcgaa
     3181 cggaatcaga aacagcacca aaagccaaat atacggtacg gcaatcacca cacgctgccc
     3241 cgggcggcgg aacagtttgt ttttcagttt attaaggttc attgcattcc ccttaaatca
     3301 acggaacagt ggcgtaggct ggttttccgg ccagctgata tagacggttt cgtcccaagt
     3361 tggcggtgta atgttgcgca cataccagta aggggcgggg acttggctct tgacgacgcg
     3421 cccgttggcg agtttgatat ggtatatggc gaagctgccc aaataggcga tttcttttac
     3481 cgtgcctttc gcccagttgt agtcgcccaa atattcgggt ttttctttat ataaatcaat
     3541 atcctctggt cgaatactaa cccaaaggtc ctgctcgctc ggaccaccca aaccgtggtc
     3601 gatgcggacg tggttttcca aaccttcgca ttcgataacg gcatagtcgg catgatcttc
     3661 aatcaccaca ccgtcaaaaa tattggtttc gccgataaac tcggcagtga agcggctgtt
     3721 gggatagtcg tacacgtcgc tgggtgtgcc gacttgctgc aactgaccgt cggacataat
     3781 ggcgatgcgg gtcgccatcg tcatcgcctc ttcttggtcg tgtgtaacca taatacaggt
     3841 tacgccgact tgttccagcg tattgaccaa ctcaagctgg gtttgttggc gcagtttttt
     3901 gtccaacgcg ccgaggggct catccagcag tagaattttc ggacgttttg ccagactgcg
     3961 tgccaaagca atgcgctgtt gctgaccgcc ggacaattgg tgcggtttgc gtttagcaaa
     4021 tttagtcatc tgaaccaggc ggagcatttc ttcgacgcgc gcggcgattt cgcctttagg
     4081 cattttgtcc tgtttcagac cgaaggcaat gttttgttct acggtcatat gcggaaaaag
     4141 cgcgtaactt tggaacatca tattgatggg gcgatcatag ggtgcaagtt tggtaatatc
     4201 ctgaccatca aggataattt ttccctgatt gggactttcc atacccgcca gcatacgcag
     4261 cagtgtagat tttccgctgc cggaactgcc caaaagggcg aagatttcgt gttgataaat
     4321 gtccaagtcg atgttatcga cagcgtaatt gtcaccaaac tttttcacca aaccttggat
     4381 ttgcagataa ggcttggttg aagacgcagt ggttgcggtc ataatggcaa tactccaata
     4441 aaaagacgag taccggcaaa acggatgttc gaatgggtga taaaaagctg tttgattgct
     4501 ggcgggagtt aaacgtttga tgccgtctga aactcttgta aagcgcacgg gcagcatgaa
     4561 atggaacaag attccaaaga actttatatt atattagttt atgcggtttt cgggcaatat
     4621 agtggattaa atttaaacca gtacagcgtt gccttgcctt gccgtactat ttgtactgtc
     4681 tgcggcttcg tcgccttgtc ctgatttaaa tttaatccac tataaatatg gatttgagct
     4741 tgtcggaaag caacagaaaa gaaaacaccg cccatttttc tgggcggtgt cggaaagcgt
     4801 aattatttac gcagacccaa gcgggtaatc aacgcgcgat acgtatcggg ctgggtacgg
     4861 cgcaagtagg ccagcaggcg gcggcgttgg ctgaccattt tcaacaggcc gcgacggctg
     4921 tggtggtctt ttgggttggc tttgaagtgg ggggtcaggt cgttgatgcg gaaagtcaac
     4981 agagcgactt gtacttcgga agagccggtg tcgccttctt tgcgttggaa atctttaacg
     5041 atttgtgctt tttgttctac ggtcagtgcc ataatgaaaa ctccaaaaat ataagaatcc
     5101 ccatagggat tcagacaagt ttgccaagcc tgaagacaac ggcaaactcc ctatgcccaa
     5161 gataggacaa cgtggcatta tgacacaatt cccgcatttc tgcacaatat tttaagaccg
     5221 tggaagtaac cgttaaaaat gccgtctgaa gcattgtctg cttgagacgg caatgttcag
     5281 acggcatatg cgcttcaaac cacgatttct tctttcttct tcggttcttt accgatattg
     5341 tcgcggctca aaccgaacat tagcagaagc gggctggcaa ccaatacgga agaataaatg
     5401 ccgaacacga tgccaatggt caacgccata gaaaagccgt gcaaggccgc accgccgaac
     5461 accagcatgg atacgaccat cgcctcggtc gaaccgtggg taatgatggt gcggctcatc
     5521 gttgcggtaa tcgcgttgtc gatgacttcc ggcacggcat gtccgcgcat cgccggcttg
     5581 cggaagtttt cacggatacg gtcgaagacg acgacggatt cgttcacaga atagcccaat
     5641 acggcaagga tacccgccaa gacggtcagc gaaaattccc attggaagaa ggcaaagcag
     5701 ccgagaataa tcacgatgtc gtgcatattg gcgataatgg cagatacggc aaaacgccat
     5761 tcaaaacgca tcgacaggta aataatgatg ccgataacga caaaacctaa agccatcaat
     5821 ccattactta ccaattcctc accgacttgc gggccgataa attcgacttg gcgcaaggta
     5881 acgtcgggac tgtctttttt cagcaaatcc ataacctgat tggacaactg tgcggaagta
     5941 acaccttctt tgttcggcag gcggatcatg atgtgtttgt tcgtacccaa tgcctgaacc
     6001 tgtacatcac ctattttcag cgtatcgagg cgttcgcgca tcttattgac atccgcaccc
     6061 tgctgatatt ggacttccat taccgtaccg ccggtaaatt cgacagagaa attcagacct
     6121 ctggtaacca aaaagaatac ggcggcaata aaggtaacca acgaaataaa ggtcgtcagt
     6181 ttgccgtagc tcataaacgg aatatcgcgt ttgattttaa agagttccat agcttactcc
     6241 ttacctgccg cagtttcggc ttcaggtttc cataccgcac cgatggaaat attctgcaat
     6301 ttgcgtctgc gtccgtacca cagattgacc aacgcacgga atacgacgac ggaggaatac
     6361 atcgaagtca gaatacccaa acagtgtacg accgcaaaac cgcgtaccgg gccggaaccg
     6421 aataccaaaa gcgcgatacc ggcaatcagc gaagtcaggt tggaatcgac aatggtcgcc
     6481 catgcgtgtt ggaaaccgag attgattgcc tgctgcggcg gcacgccggc acgcaattct
     6541 tcgcggatac gttcgttaat caagacgttg gagtcgattg ccatacccaa agtcaacgcc
     6601 agcgcggcca tacccggtaa cgtcaacgtt gcctgcatgg cagacaaaat accgattagg
     6661 aacagtatgt tggcactcaa tgcaatggta gaaaagaaac ccatcagacg atagtaaacc
     6721 accatgaatg cagcaacgat ggcaaaaccc cataaagtcg aatggaagcc tttttcgatg
     6781 ttctccttac ccaaagacgg accgatggta cgttcttcga caatctgcat cggcgcggca
     6841 agagaaccgg cacgcaacag caaagacgta tcattggctt cggctgtcgt catgcttccg
     6901 gaaatttcca cgcgtccgcc tgtaatggca gtacggataa ccggcgcggt tacaacctcg
     6961 gattttcctt ggtcgatcaa aaccatcgcc atgcgtttgc cgacatttgc ggcagtcagt
     7021 tcgccgaaaa tgctgccgcc cgcgctgtcc aagctcagac tgacggcagg tgcgcccatt
     7081 tggtcgaaac tcggttgcgc atcgttgatg ttgtcgcccg tcagctcgac ctgtttgctg
     7141 attagcagag tttcgggacg atctccgccg cttgaaagca gctcataacc gctcggcacg
     7201 ttgccttcca atgcctcgcg caacttggca ggatcgtcct ccaccatacg caattccaaa
     7261 gtcgcggtac ggccgatgat gtcttttgcc ttggcagtat cctgaacgcc cggaagctgc
     7321 acgacgatac ggtcggcacc ggactgctgg atgacgggtt cggccacgcc caactcgttc
     7381 acacggttgt gcagggtagt gatgttctgt ttgaccgcat cggaacgcac tttattgacc
     7441 gcctcttccg aaagtgtcaa gacgatattg ctgccgtctg aattcagcgt tgcttcagga
     7501 aacagcttgc gtaactgcgg cagtgccttt tgcacatcac ctgcatcctg caaagggacg
     7561 gtcaggctgt ttccagcctg acgcaccgtg ccgctgcgga ttttttcgcg gcgcagttcg
     7621 cggcggatgt cgcccgaata acgttcaaac gttttctgca tcgccgcttt catgtccacc
     7681 tgcatggtga aatgcacacc gccgcgcaag tccagaccca aaaacatcgg attggctttg
     7741 attttcgcca tccactcagg actgtctgcc aaaaggttga gtgcggtaat ataaccttcg
     7801 cccaaagtat tttcgatgac gtcgcgcgct ttaagctgcg tttcggtgtc tttgaaacgc
     7861 actttcagtg aattgtccac aacaaacatc ccgtcggtct gaatacccgc gttttgcagc
     7921 gcggcatcca ctttggattg agtctgttcg ttgatgatga tggcttgtcg gttggtcgat
     7981 acctgcacgg cgggtgtttc gccgaatagg ttgggcagcg aatacactgc ggcaaccgca
     8041 atcgtgaaca caatcagcag atatttccat aaaggataac ggttcatcat tgttccttaa
     8101 tggttggaac cccacccttt cggtggtgtc ggaatcgggc tatttcagaa gaggcaaaaa
     8161 cccttcccag ccaggcaaga ccggaaagcg gcatcctgaa tatgccgccc tgcgtgtcgg
     8221 aacatggtca agccttcggt tggaattcaa aacaaagtgc cgcattcggg cttttccgat
     8281 gcggcttgtc ggcacaaatc aatcgacttt tgcggcaatc gcattgcgtt ctacttcgac
     8341 ctcgattttt gtaccctgtc cgatatccac ggtaaaaaac tgttcgccga ctctggttac
     8401 cttacccttg aaacctgccg ccaagaccac tttgtcgccg actttcaagg cggcaagcat
     8461 tgcctgatgc gctttgaatt tcttttgctg cggacgcatg atcaggaagt agaacaccac
     8521 cataatcaac actaaaggag caaattgtgc aacagcttga ttcataattt atccgttctt
     8581 tctaatatgg ttgaaaatcg agaggggtat ataataacat aagaccgtaa acaatatatc
     8641 gggtttgccg tccgtaccga ccgtataccg cagcctgccc gtccacaaac ccatgtcctt
     8701 gacccgccta atcttgaaat tctatgcact gttgcgcctt tttttgggca aaaacgcccg
     8761 caccgcatgg atttcgcatc ccgcctgtgc cgggcacgaa cccggcgcaa accatcccga
     8821 ttcgcccgac cgcatcctct gcatcgagca ggcattgcgc cgcgccggta tttggcagca
     8881 cctccaaacc atagaggcgg aagaaatcag cgatacgcgc ctcgcacttg tccactcgag
     8941 caaatatctg aaccgtttgg aatcttgcct gccccaaaaa ggcaagattt cccgcctgga
     9001 taacgacact gcaatcagca caggctcgct gtctgccgca cgctttgccg ccggttcggc
     9061 agttcaggca gtcgacatgg tcatgaaccg taaagcatgg catgcctttt gcgccgcccg
     9121 cccgcccgga caccatgcgg gcagcggcaa agccggcgga ttctgcctgc tgaacaacgt
     9181 tgccgccggc gtcatgcatg ccattgccga ataccgcctg aaacgcattg ccgtcatcga
     9241 tttcgatgtc cactacggcg acggtacggc agaaatattc aaagacgatc cgcgcatcct
     9301 gtttttcaac ctatttgaaa ccgacctttt ccccttcccc gaaaacaacg atatgcccga
     9361 cggcggcaat atggtgcacc tgcccttgcc gccgggaacg ggcagccgca cattccgcga
     9421 agccgtccgc aggcagtggc tgccccgact tgccgcattc aaacccgaac tggtgctgct
     9481 gtcggcagga ttcgacgcac accgtctaga cgaatcgggc aggctcaacc tgcacgaggc
     9541 ggattttgcc tggctgacac acaaaatcat tcagacggca tcgggctgcc ccggcaaaat
     9601 cgtatccgta ctcgaaggcg gctacaccct tgaacctctg gcacaatctg ctgccgagca
     9661 tatccgcgtg ctggcagggc tgggcaaatc cgatgccgca accgcctatc agaaaacact
     9721 ggacccaaca aaaaaacggt ttgccaaacc gaaaaccgga caggtgcgcc aacctaccca
     9781 atccgaccgt tac
//
LOCUS       DAXHNP010000070         9751 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.070, whole genome shotgun sequence.
ACCESSION   DAXHNP010000070 DAXHNP010000000
VERSION     DAXHNP010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9751
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.070"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..388
                     /locus_tag="ACFM5C_001224"
     CDS             <1..388
                     /locus_tag="ACFM5C_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6068925.1"
                     /translation="SSLGLSAIYDFKLNDKFDKFKPYIGARVAYGHVKHQVHSVESKT
                     TIVTTAPTGGAPKGGTILQGPTPKPPYHESNSISSLGLGVIAGVGFDITPKLTLDTGY
                     RYHNWGRLKNTRFKTHEVSLGMRYRF"
     gene            complement(362..571)
                     /locus_tag="ACFM5C_001225"
     CDS             complement(362..571)
                     /locus_tag="ACFM5C_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068926.1"
                     /translation="MPSERLSDGIFPCVLNRAHETPDAFGGNVGCRAMFGGDQRTKYA
                     GKGLMPSEGSDGIGIGESEAVAHAQ"
     gene            complement(589..1146)
                     /locus_tag="ACFM5C_001226"
     CDS             complement(589..1146)
                     /locus_tag="ACFM5C_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6068927.1"
                     /translation="MDALKLLTNRRSSKKLKHPAPDAAELEQIFQAATQVPDHGNMRP
                     FRFTVIQGEVGLQRFRDVLKQTVAELNFGDDAMKKAEKVGNMAPMVIGVTFAPNQKVA
                     KPKPEWEQMLTAGCAAYALQLAATAQGFDNVWITGMWVNSPLLREAFGCADKDKIIGL
                     MMIGTPTEEAHKPKNTDLEAFVSHW"
     gene            complement(1222..2856)
                     /locus_tag="ACFM5C_001227"
     CDS             complement(1222..2856)
                     /locus_tag="ACFM5C_001227"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6068928.1"
                     /translation="MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGT
                     GADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKS
                     MLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAA
                     VSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLD
                     MAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSC
                     GTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKV
                     PNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYT
                     EAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYV
                     SDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENE
                     YSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR"
     gene            complement(2926..3259)
                     /locus_tag="ACFM5C_001228"
                     /pseudo
     CDS             complement(2926..3259)
                     /locus_tag="ACFM5C_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221902.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3259..4365)
                     /gene="serC"
                     /locus_tag="ACFM5C_001229"
     CDS             complement(3259..4365)
                     /gene="serC"
                     /locus_tag="ACFM5C_001229"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFC6068929.1"
                     /translation="MSLYPIYNFSAGPAVLPEAVLETARQEMLDYNGTGFPVMAMSHR
                     SEMFLSILHHAEQDLRQLLKVPDNYKILFLQGGATTQFNMAAMNLAHGFRTADAVVTG
                     NWSRIAYEQMSRLTDTEIRLAAHGGEQFDYLDLPPVETWDVAPDSAFVHFAVNETVNG
                     LQYREVPRLSEGMPPLVCDMSSEILSREFDVADYGLIYAGAQKNIGPAGVTVVIVRED
                     LLERCPNDIPDVFNYRSHLNRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRL
                     KAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGY
                     KTVGGMRASIYNAMPLEGVRALADFMRDFQRRYG"
     gene            4730..5161
                     /gene="rimP"
                     /locus_tag="ACFM5C_001230"
     CDS             4730..5161
                     /gene="rimP"
                     /locus_tag="ACFM5C_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFC6068930.1"
                     /translation="MDIQTILEKTLPGLGYELVDFELTAQGTLRVFIDKEGGITVEDC
                     ATVSNHLSRVFMVEDIDYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQK
                     NFIGKIEGCKNDTVTVSFDGKTVQIELGNIDKARLRPEFKF"
     gene            5189..6691
                     /gene="nusA"
                     /locus_tag="ACFM5C_001231"
     CDS             5189..6691
                     /gene="nusA"
                     /locus_tag="ACFM5C_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFC6068931.1"
                     /translation="MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHM
                     DVRVQINRDTGEYQTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQL
                     PNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVV
                     AGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYA
                     NEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSG
                     ERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVR
                     LASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEV
                     AYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRNLEGIDADM
                     LRSLAEAGITTRDDLAELAVDELIEITGVNEETAKAVILTAREHWFTEDK"
     gene            6703..9591
                     /gene="infB"
                     /locus_tag="ACFM5C_001232"
     CDS             6703..9591
                     /gene="infB"
                     /locus_tag="ACFM5C_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFC6068932.1"
                     /translation="MSNTTVEQFAAELKRPVEDLLKQLKEAGVSKTGGGDSLTLDDKQ
                     LLNAYLTKKNGSNGGTISIRRTKTEVSTVDGVKVETRKRGRTVNIPSAEELAAQVKAA
                     QTQAAPVRPEQTAEDAAKARAEAATRAEARAKAEAEAAKLKAAKAGNKAKPAAQKPTE
                     AKAETAPVAAETKPAEESKAEKAQADKMPSKKPAEPKEKAAKPKHERNGKGKDAKKPA
                     KPAAPAVPQPVVSAEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAMKQQAEQQ
                     AKAAQEAKTGRQRPAKPAEKPQAAAPAVENKPVNPAKAKKEDRRNRDDEGQGRNAKGK
                     GGKGGRDRNNARNGDDERVRGGKKGKKLKLEPNQHAFQAPTEPVVHEVLVPETITVAD
                     LAHKMAVKGVEVVKALMKMGMMVTINQSIDQDTALIVVEELGHIGKPAAADDPEAFLD
                     EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQHIGAYHVET
                     PRGVITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIAHAKAAGVPM
                     VVAVNKIDKEAANPERIRQELTAHEVVPDEWGGDVQFIDVSAKKGLHIDALLEAVLLE
                     AEVLELTAPVDAPAKGIIVEARLDKGRGAVATLLVQSGTLKKGDMLLAGTAFGKIRAM
                     VDENGKSITEAGPSIPVEILGLSDVPNAGEDAMVLADEKKAREIALFRQGKYRDVRLA
                     KQQAAKLENMFNNMGETQAQSLSVIIKADVQGSYEALAGSLKKLSTDEVKVNVLHSGV
                     GGITESDVNLAIASGAFIIGFNVRADASSRKLAENENVEIRYYNIIYDAIDDVKAAMS
                     GMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVVKRDSHVRLIRNNVVIHTGE
                     LASLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDIVEVARSL"
BASE COUNT         2586 a         2823 c         2467 g         1875 t
ORIGIN      
        1 ttcttctctc ggcttatccg ccatttacga tttcaaactc aacgataaat tcgataaatt
       61 caaaccctat atcggtgcgc gcgtcgccta cggacacgtt aaacatcagg ttcattcggt
      121 ggaaagcaaa accacgattg ttaccactgc accaacggga ggtgctccaa agggaggcac
      181 tatcctacaa ggtccgaccc ccaaacctcc ctatcacgaa agcaacagca tcagcagctt
      241 gggtcttggt gtcatcgccg gtgtcggttt cgacatcacg cccaagctga ccttggacac
      301 cggataccgc taccacaact ggggacgctt gaaaaacacc cgcttcaaaa cccacgaagt
      361 ctcattgggc atgcgctacc gcttctgatt ccccgatacc gatgccgtct gaaccttcag
      421 acggcatgag acctttgcct gcgtacttgg tacgctggtc gcctccgaac atggcgcgac
      481 acccgacatt tccgccgaac gcatcgggcg tttcatgagc ccggtttaaa acgcatggaa
      541 aaatgccgtc tgaaagcctt tcagacggca ttttgtttga gattccgttt accaatggct
      601 gacaaacgct tccaaatcgg tatttttggg cttatgcgct tcctctgtcg gcgtgccgat
      661 catcatcagc ccgatgattt tatccttatc cgcacatccg aaagcctcac gcaacaaggg
      721 gctgttgacc cacattcccg ttatccacac attatcgaaa ccttgcgccg ttgccgccag
      781 ctgcaaggca tacgccgcac agcctgccgt cagcatctgc tcccattccg gcttcggctt
      841 ggcgactttc tggttgggcg caaacgttac cccgatgacc atcggcgcca tattgcccac
      901 tttttccgcc tttttcatcg catcgtcgcc gaaattcaat tcggcaaccg tttgcttcaa
      961 cacatcgcga aaacgttgca atcctacctc gccttgaatc acggtaaaac ggaaggggcg
     1021 catattgccg tgatcgggaa cttgggttgc cgcctgaaat atttgttcca actccgccgc
     1081 atcgggggcg gggtgcttca gctttttgga agatcggcgg ttcgtcaata attttaaagc
     1141 atccatatcg ttatactccg gtcatcggtc gggtgttcgg acacatatgc cgtccgaagg
     1201 cttcagacgg catatccggc atcagcgcgg acggcggcag gctgccaata tatccatttc
     1261 cttccgatag gtttggctgt tggaaatgtc catcagcccc aataccgtgc tgaaatagtg
     1321 gtcgtgcgaa tattcgtttt ccgccgcttt ttgtttgagg cattggaaat ctatgccccc
     1381 gtgttggcgg aaggctttgg aaaaccacat aaccatcggg atatgcgtct gcccggaagg
     1441 cgcgatggcg taaggcgcgg cgtgcaggta catcccgttt tcgcccaaac tttcgccgtg
     1501 gtcggaaaca taatgcacca cgctttccaa atcgtcgcgg ttttcaagtt tgcggataac
     1561 cttgtcgata aactggtcca catacaaaac cgtattgtcg taagtgttga ccagcgtggc
     1621 gcgggtgcat ttgttgattt cgttggtgtc gcaggtcggc gtgaatttgc gttcggcttc
     1681 ggtatagcgt tcgtaatacg tcggcccgtg gctgccgatg gtatgcagga ttaaaaccgc
     1741 gtctttatcg tttttgttga ggacttcgtc gaacttagtc agcaggatat tgtcgaggca
     1801 ctcgccgttg cggcagtatt cgggcaggtt gagcgaggta acgtcggtat tcggcacttt
     1861 gccgcacacg cccttgcagc cggaatcgtt ttccaaccaa gtaacttcca cgccggcgcg
     1921 ctgcacgatg tccagcaggt tgtcttggtg ttcggctttg atttcgtcat aatccgtgcg
     1981 gtcgaaggtt gagaacatac acggcaggga gtgcgcggtc gatgtgccgc agcttctgac
     2041 ctgcgggaaa ttgacaattt catcgccgcg cgcggcaagc agcggcgtag tttggcggct
     2101 gtaaccgttc aaaccccagt tggcggcacg cgtggtctcg cccacgacca gcaccacgaa
     2161 acggcgcagg ctgccggccg gccggttttg cacgaccgcc atatccaatt gcgtataagg
     2221 aatattggaa cgcttccaat ctttgtattt cgacacgccc gcgccgatga aattagatgg
     2281 cacaatcaga tgggttactg atttattgtt gcggaaaaac gaggcgtaat cctgatattg
     2341 caacattgcg atgcccaacg cgcacaaaaa ggaaacggcg gcaagcacaa ggcgcgtcaa
     2401 aagctcctta taccaaacgc ggtatttaac cttgacggcg atatacgcca gcgcgggcaa
     2461 tacgcccaaa catacaatcc acagcacata gcccggcgta atcaggcgcg cgctttcggc
     2521 agccgtagtt tgcaagacat tattcaacat cgacttgttg aaatagatat tgaaaaatat
     2581 ttcttggtaa gacaccgccg cactgataac caatatcaac ggaatcaata ccttatgcac
     2641 gaaaggcagg gcaatgacgt gaaaaacgaa attacttaaa aaaaacagca ccaccggcat
     2701 cgtatagagg aagatatccg ccccggtgcc gttaaaagga tgaagctcga caactttggc
     2761 aaaaaaggcg taattcaata ccagcgagga atacagggaa aggaaggcaa tcagcgcgga
     2821 agagccgagc ttcggcctca ggttcggttt tatcatttgg aatgtgtcgg ataagggttg
     2881 gaaaaggcat ccggcatttg gaatccggat tattgaaaaa gattcttaat tataaggcaa
     2941 cggagcaaag cagggcaaga aaacggcggc tgtgcggggg gttccgcccg ccattcaaac
     3001 gtccggcaga cataaaaaca tcgtaagcaa gattcgaacc ggtctgcaac cgcccctgcc
     3061 agaaaaacgg gcaaagcatt tcatattgga aaaacccggc cgcgccgccg acgggacagt
     3121 ccggcacaaa cagcatcacg ctcggattga aaaggacgga tagccgccgg cagcacaatc
     3181 ttaccacctc caaaacgccg ccggagaacg ccgaaacagc cgatgccgtc tgaagccgct
     3241 tcagacaaca tcgggacatc aaccgtaacg ccgttggaaa tcgcgcataa aatccgccaa
     3301 agcccgcacg ccttcaagcg gcatcgcatt ataaatgctg gcacgcatac cgccgacggt
     3361 tttatagccc ttaagcaggc acaagccctg caattcggct tccagcacaa aacggcggtc
     3421 aagctcctca tcccccgttt ggaacacgac attcatttta gaacgcgcat tcggacggat
     3481 acggttgata tagaaaccgc cgctgccatc tatcgtctca tacaaggttt gcgccttcag
     3541 ccgattgacc gcttcaattt ttttcacacc gccctgcgcc tgcagccagc ggaacaccag
     3601 ccccgacata taaatcgcgt aagttgacgg cgtgttgtac ataccgtcgc ggttcaaatg
     3661 cgaacggtag ttgaacacat cgggaatatc gttcggacaa cgctcgagca aatcctcacg
     3721 cacaatcacc accgtaaccc ctgccggccc gatgtttttc tgtgcgcctg cgtaaatcag
     3781 tccgtagtcg gcaacatcaa actcgcgcga caaaatctcg ctggacatat cgcacaccag
     3841 cggcggcatg ccttctgaaa ggcgcggcac ttcacggtat tgcagcccgt tgaccgtttc
     3901 attgacggca aaatggacaa acgccgaatc gggtgcaaca tcccacgttt ccacaggcgg
     3961 caggtcgaga tagtcgaact gctcgccgcc atgcgccgcc aaacggattt ccgtatcggt
     4021 caaacggctc atctgttcat aagcgatacg gctccagttg cccgttacca ccgcgtcggc
     4081 agtgcggaaa ccgtgtgcca gattcatggc tgccatatta aattgggttg ttgctccgcc
     4141 ctgcagaaac aatatcttat agttgtcagg cactttcaaa agctgcctca aatcctgttc
     4201 cgcatgatgc aggatgctca aaaacatttc cgaacggtgg ctcatcgcca tcacgggaaa
     4261 acccgtaccg ttgtagtcca acatttcctg ccgcgccgtt tccaacacgg cttcgggcaa
     4321 tacggcaggg ccggcggaaa aattgtaaat cggataaaga gacatgatgc agccctgatt
     4381 ctgaacaata acccgcctga ttttaggctt gcagcaggct ttgtgcaagg atgggaaata
     4441 cctgtcctcc gcccggcttc atgccgcccg aacacggaaa ataatatcaa tatattgatt
     4501 tacaaacata aaaatcatgt acgcgacaaa tagatacatt tgttttgtca acaatattca
     4561 cgatttccca ttacaaacct cccttacacc cgcttttttc cgtcccaaaa acacaaaata
     4621 aatcaacact ttcatttctc cgcaaaagcg gttataatca cgccgatttt tcaactttga
     4681 cgaaaaatgg ccacggggcc atttttttat tatgtacata gggagcagca tggatatcca
     4741 aaccatcctc gaaaaaaccc tgcccggcct gggctacgaa ctggtcgatt ttgaactgac
     4801 cgcgcaagga acattgcgcg tgttcatcga caaagaaggc ggcattaccg tcgaagactg
     4861 cgcaaccgtc agcaaccact tgagccgcgt cttcatggtt gaagacatcg actacaaaaa
     4921 cctggaaatt tccagccccg gactcgaccg ccccttgaaa aaagccgccg acttcgtgcg
     4981 ctttgccggt cagaatgcca aaatcaaaac ccgcctgccg atagacggtc agaaaaactt
     5041 tatcggtaaa atcgaaggct gcaaaaacga taccgttacc gtatccttcg acggcaaaac
     5101 cgtacaaatc gaattgggca acatcgacaa agcccgcctg cgccccgaat tcaaattcta
     5161 aaacacaaca atattggaga tgttcaaaat gagtcgtgaa atgttacagc tggcagaagc
     5221 actggcaagc gaaaaaaacg ttgatgcgga agtcgtcttc caagcactgg aattcgccct
     5281 gtctaccgcc gccaagaaaa aggcagaccg cgaacacatg gatgtccgcg tacaaatcaa
     5341 ccgcgacacc ggcgaatacc aaaccttccg ccgctggctg attgtcgccg atgaagacta
     5401 tacctatccc gatgtcgaaa aaaccatcga ggaaatccaa gaggaaattc ccggcactac
     5461 catccaaatc ggcgaatact acgaagagca gctgcccaac gaaggcttcg gccgccaagc
     5521 cgcgcaaacc gccaaacaaa tcatcctgca acgcatccgc gatgccgagc gcgagcagaa
     5581 tctgaacgag tttctcgccg tcaaagaaga catcgtgtcc ggcacggtca aacgcgtcga
     5641 acgccacggc atcatcgtcg aagtcgttgc cggcaaactg gacgcgctga ttccgcgcga
     5701 ccaaatgatt ccgcgcgaaa acttccgcag cggcgaccgc atccgcgccc tcttcctgcg
     5761 cgtcgaagaa atcggcaaca ccggccgcaa acaagtcatc ctgagccgta cttccggcga
     5821 tttcctcgtc aaactgtacg ccaatgaagt acctgaaatt gcagacggca tgcttgaaat
     5881 ccgcgctgtc gcccgcgacc cgggccagcg tgccaaagtc gccgtcaaag ccaacgacca
     5941 gcgcatcgat ccgcaaggca cctgtatcgg cgttcgcggt tcgcgtgtca atgccgtcag
     6001 caacgaattg tccggcgagc gcatcgacgt tgtcctttgg tcgcccgagc ctgcccaatt
     6061 cgtcatgagc gcgctctcac ccgccgaagt cagccgcatc gtcatcgacg aagacaaaca
     6121 cgccgtcgat gtcatcgttg ccgaagacca gctcgcgctc gccatcggac gcggcggtca
     6181 aaacgtgcgc cttgcttccg acctgaccgg ctggcagctc aacatcatga cttccgccga
     6241 ggcagacgaa cgcaatgcgg cagaagatgc cgccatccgc cgcctgttta tggatcactt
     6301 gaacgtggac gaagaaaccg ccgacgtact ggttcaggaa ggttttgcaa ccttggaaga
     6361 agtcgcctat gttcctgccg ccgaactgct tgccattgaa ggatttgacg aagaaatcgt
     6421 cgatatgctc cgcaaccgcg cccgcgatgc catcctgacc atggcgattg ccgccgaaga
     6481 aaaactgggc gaagtgtccg acgatatgcg caacctcgaa ggcatagatg ctgatatgct
     6541 ccgcagcctt gccgaagcag gcattactac ccgcgacgac ttggcagagc ttgccgtgga
     6601 cgaactgatt gaaatcaccg gtgtaaacga agaaaccgca aaagccgtca tcctgaccgc
     6661 acgcgaacac tggtttaccg aagacaaata aagggggtac agatgagtaa cacaaccgta
     6721 gaacaatttg ccgccgagct gaaacgcccc gtcgaagacc tgttgaaaca gttgaaagaa
     6781 gccggcgtca gcaaaaccgg cggcggcgat tccctgacgc tggacgacaa acagcttctg
     6841 aacgcctacc tgaccaagaa aaacggcagc aacggcggca ccatcagcat ccgccgcacc
     6901 aaaaccgaag tcagcaccgt tgacggcgta aaagtcgaaa cacgcaaacg cggacgcacc
     6961 gtcaacattc cttctgccga agaattggca gcacaggtaa aagccgccca aacccaagcc
     7021 gcacctgtcc ggccggagca gacggcagaa gacgcggcaa aagcccgagc cgaagctgcc
     7081 acacgtgcag aagcccgtgc caaggcagaa gcggaagcgg caaaactgaa agcggcaaaa
     7141 gcaggcaaca aagccaaacc tgccgcacag aaacccaccg aagcaaaagc cgaaaccgca
     7201 cccgttgcgg cggaaaccaa acccgccgaa gaaagcaaag cggaaaaagc ccaagccgac
     7261 aaaatgccgt ctaaaaaacc cgccgagccc aaagaaaaag ccgccaagcc gaaacacgag
     7321 cgaaacggca aaggcaaaga tgccaaaaaa ccagcgaaac ctgccgcacc tgccgtgccg
     7381 caacccgtgg tcagcgcgga agaacaggcg caacgcgatg aagaagcacg ccgtgccgcc
     7441 gcacttcgcg cccaccagga agccctgttg aaagagaaac aggaacgcca ggcacgccgc
     7501 gaagccatga aacaacaggc agaacaacag gcaaaagccg cacaggaagc caaaaccggc
     7561 agacagcgtc ccgccaaacc tgccgagaaa ccgcaggcag ccgcgccggc cgtcgaaaac
     7621 aaacctgtca atccggcaaa agcgaaaaaa gaagaccgcc gcaaccgcga tgacgaaggt
     7681 caaggccgca acgccaaagg caaaggcgga aaaggcggac gcgaccgcaa caatgcacgc
     7741 aacggcgacg acgagcgcgt acgcggcggc aaaaaaggca aaaaactcaa actcgagccg
     7801 aaccaacacg ccttccaagc accgaccgaa cccgtcgttc atgaagtttt ggttcccgaa
     7861 accattaccg ttgccgattt ggcgcacaaa atggcggtca aaggcgtgga agtggtcaaa
     7921 gccctgatga agatgggcat gatggttacc atcaaccaat ccatcgacca agacaccgcc
     7981 ctgattgtcg tcgaagaact cggacacatc ggcaaacccg ccgcagcgga cgaccccgaa
     8041 gccttcttgg acgagggtgc ggaagcagtg gaagccgaag cattgccgcg tccgcccgtt
     8101 gttaccgtga tgggtcacgt cgaccacggc aaaacctcgc tgctggacta catccgccgt
     8161 accaaagtgg tacagggcga agcgggcggc attacgcagc acatcggcgc gtaccacgtt
     8221 gaaacccctc gcggcgtgat taccttcttg gacaccccgg gtcacgaagc ctttaccgct
     8281 atgcgcgcac gcggtgcgaa agcaaccgac atcgtgattc ttgtggtcgc cgccgacgac
     8341 ggtgtgatgc cgcaaaccat cgaagcgatt gcccacgcca aagcggcagg cgtaccgatg
     8401 gtggttgccg tcaacaaaat cgataaagaa gccgccaacc cagagcgtat ccgccaagag
     8461 ctgaccgcac acgaagtcgt gcctgacgaa tggggcggcg atgtacagtt tatcgacgtt
     8521 tccgctaaaa aaggcctgca catcgatgca ttgctcgagg cagtcttgct cgaagccgaa
     8581 gttttggaac tgaccgcacc tgtcgatgcg cccgccaaag gcatcatcgt cgaggcgcgc
     8641 ttggacaaag gccgcggcgc ggttgccaca ttgctggttc aaagcggtac gctgaaaaaa
     8701 ggcgacatgc tgctggccgg tacggcattc ggcaaaatcc gcgcgatggt cgatgaaaac
     8761 ggcaaatcca ttaccgaagc cggtccgtcc atccccgtcg aaatcctcgg cttgtccgac
     8821 gtacccaatg cgggcgaaga cgcgatggta ttggcggacg agaaaaaagc gcgcgaaatc
     8881 gccctcttcc gccaaggcaa ataccgcgac gtgcgccttg ccaaacagca ggcggcgaag
     8941 ctggaaaata tgttcaacaa tatgggcgaa acccaggccc aatctttgtc ggtcatcatc
     9001 aaggcagacg ttcagggctc ttacgaggct ttggcgggca gcctgaaaaa actgtccacc
     9061 gacgaggtga aagtgaacgt gttgcacagc ggcgtgggcg gcattaccga atcggatgtc
     9121 aaccttgcca tcgcttcggg cgcgttcatt atcggcttta acgtgcgtgc agatgcctct
     9181 tcgcgcaaac ttgccgaaaa tgaaaacgtg gaaatccgct actacaacat catctacgat
     9241 gccatcgacg acgtgaaggc ggcgatgagc ggtatgcttt ccccggaaga gaaagaacag
     9301 gttaccggta cggtcgaaat ccgtcaggtc atctccgttt ccaaagtcgg caacattgca
     9361 ggctgtatgg ttaccgacgg cgtggtcaaa cgcgattccc atgtccgcct catccgcaac
     9421 aacgtggtta tccacacggg cgaactggct tcgttgaaac gctataaaga cgatgtaaaa
     9481 gaagtccgca tgggcttcga gtgcggtctg atgctcaaag gctacaacga aatcatggaa
     9541 ggcgaccaac tggaatgctt cgacatcgtc gaagttgccc gcagcctgta attcctttgc
     9601 aaataaaatg ccgtctgaag cgttcagacg gcaacgaaac gggttctgta tcatacagaa
     9661 cccgtttttt gtcgcaaatc ggcttcagac agccctcttg ccttatcccg atttgaatct
     9721 gacttgccat acaaacaggc ttcagacggc a
//
LOCUS       DAXHNP010000071         9729 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.071, whole genome shotgun sequence.
ACCESSION   DAXHNP010000071 DAXHNP010000000
VERSION     DAXHNP010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9729
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.071"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(188..523)
                     /locus_tag="ACFM5C_001233"
     CDS             complement(188..523)
                     /locus_tag="ACFM5C_001233"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6068933.1"
                     /translation="MNNVSEVIKEHHIFVLPSYYREGVPRSTQEAMAVGRAVITTDVP
                     GYRETVADKVNGFLIEPWNPRILAEKMIYFIENREAVRLMGNASYAIAKDKFDAEKVD
                     LKLLDILKA"
     gene            complement(520..1317)
                     /locus_tag="ACFM5C_001234"
     CDS             complement(520..1317)
                     /locus_tag="ACFM5C_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6068934.1"
                     /translation="MKIVFITTVASSIYGFRAPVIKKLIGKNHQVYAFVSEFSDNELD
                     IIREMGVTPVTYRSNRSGLNPFSDIKSTFLIFKELKKISPDLVFPYFAKPVIFGTFAA
                     KLAGVPRIVGMLEGLGFAFTPQPEGIPLKTKIIKGILIALYRIALPMLESLIVLNPDD
                     KDELTDKYGIKIKNIHILGGIGLDSRQYPYSEADIPDEKEPVKFLFIGRFLKEKGIDD
                     FIRAAEQVKDKYPDTVFTALGAIDKSRGGGAIWNGLPPAILSVSPVL"
     gene            complement(1623..2870)
                     /gene="fabF"
                     /locus_tag="ACFM5C_001235"
     CDS             complement(1623..2870)
                     /gene="fabF"
                     /locus_tag="ACFM5C_001235"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFC6068935.1"
                     /translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLAGKSGIGAITRFDAS
                     DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
                     GVNIGSGIGGLPSIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
                     MVSACTTGAHAIGNSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
                     TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
                     EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
                     KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
                     VAISNSFGFGGTNGTLVFKRFKG"
     gene            complement(3026..3262)
                     /gene="acpP"
                     /locus_tag="ACFM5C_001236"
     CDS             complement(3026..3262)
                     /gene="acpP"
                     /locus_tag="ACFM5C_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFC6068936.1"
                     /translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
                     MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
     gene            3494..4501
                     /locus_tag="ACFM5C_001237"
     CDS             3494..4501
                     /locus_tag="ACFM5C_001237"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFC6068937.1"
                     /translation="MYPLARRILFALDAEKAHHFTLDALYTVYKLGLIPVTGNRTKPV
                     KLMGMDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPKPQPGNPQPRLFRVPE
                     HQGIINRMGFNNHGIDTMIRNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
                     AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVYGKYVPLAVKIAPD
                     LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
                     KLLADHIDGKLPIIGVGGIMEGKDAADKIRLGATAVQVYSGLIYKGPALVKECLKALA
                     R"
     gene            4517..4696
                     /locus_tag="ACFM5C_001238"
     CDS             4517..4696
                     /locus_tag="ACFM5C_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068938.1"
                     /translation="MPSERTFCRSDGIFISFFRLPPLENPLRAALFETKQTPAANRTI
                     LIRSQSKSGGKLLNI"
     gene            4834..5157
                     /locus_tag="ACFM5C_001239"
     CDS             4834..5157
                     /locus_tag="ACFM5C_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068939.1"
                     /translation="MFKDELNEFIRLISDPESELDEWYLSDFKDEHIWEMQSYEAFSC
                     LREAVPYLFAYPRYGYELLEIISALKETSDTTELFYEPGIVPLLIDLYKEDSYLVNMV
                     KRIFK"
     gene            5244..5525
                     /locus_tag="ACFM5C_001240"
     CDS             5244..5525
                     /locus_tag="ACFM5C_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068940.1"
                     /translation="MENGQRNNRFPLEKRIFYLEHSGRYLMICALSDYSQNKHTVVMA
                     NFIYPDEKTDWRNLDDLFNELVLEELQASFMDWHPTVEEAISRHLEDFS"
     gene            5578..6051
                     /locus_tag="ACFM5C_001241"
     CDS             5578..6051
                     /locus_tag="ACFM5C_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2247 family protein"
                     /protein_id="HFC6068941.1"
                     /translation="MNLDLTAQKVRLSWKDILWGYGNKYLGWADVAAYARKMTLSDHD
                     ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
                     EKIYADFDYPEEIESFVRYMPPKDGYIPSAHTYEENIARLYSHWEHYLNNGGGQG"
     gene            6305..6640
                     /locus_tag="ACFM5C_001242"
     CDS             6305..6640
                     /locus_tag="ACFM5C_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068942.1"
                     /translation="MTVDKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLLSKQGDPDFQGFAEDALDEI
                     SLFIFKKRP"
     gene            6820..9510
                     /gene="glnE"
                     /locus_tag="ACFM5C_001243"
     CDS             6820..9510
                     /gene="glnE"
                     /locus_tag="ACFM5C_001243"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HFC6068943.1"
                     /translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
                     AFADWDKIRAEENEEELARQLRGLRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
                     NTALDFSYAYYQDMYGTPIGRYTKSPQHLSVVAMGKAGGYELNVSSDIDLIFIYPESG
                     DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
                     QYLITQGREWERYAWCKGRVVTPYPNDIKSLVRPFVFRKYLDYGAYEAMRKLHRQIHS
                     EVGKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTRETLEKLAESGIMP
                     SENVETLLAAYRFLRDVEHRLQYWDDRQTQTLPASPEQRQLLAESMGFDDYADFLNAL
                     NQHRNQVNRLFNEILSEPEEQTQSNSEWQWVWQDKPDEEERQGRLKEHGFDAETIATR
                     LDQIRHSHKYRHLSAHAQPRFDAVVPLFVQAAAAQSNPTDTLMRLLDFLENISRRSAY
                     LAFLNEHPQTLAQLAQIMGQSSWVAAYLNKYPILLDELISAQLLDTAFDWQALAAALS
                     DDLKACGGDTEAQMDTLRHFQHAQVFRLAVQDLAGLWTVESLSDQLSALADTILAAAL
                     LCAWADMPKKHRDTPQFAVVGYGKLGGKELGYASDLDLVYLYDDPHPEAGDVYSRLAR
                     RLTNWLSTATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
                     FICGTPEIQTAFDRIRTEILTAERDQTALADEIIEMREKMFPTHPPADSNVKYARGGV
                     VDVEFIVQYLILAHARKYPQLLDNYGNIALLNIATDCGLIDKTLAEQSRTAYRFYRRQ
                     QHNTKLRDAEKTEVSGELLAHYGNVRKLWREVFGEEAATA"
BASE COUNT         2432 a         2446 c         2525 g         2326 t
ORIGIN      
        1 aaacagcaac cctccgccgt cattcccacg aaagtgggaa tctagaaact caaagttgca
       61 agaatttatc ggaaatgacc gaaactcaac gaacctggat tcccgctttc gcgggaatga
      121 cgggggtgtg gcgggaatga cgggggttta tcagaaatga ccgaaactca aaagcgggca
      181 gccttgttta cgccttcaaa atatcgagca atttcaaatc gactttttcg gcatcgaatt
      241 tatctttggc aatcgcataa cttgcattcc ccatcaggcg gacggcttcc ctgttttcga
      301 taaaataaat cattttttcg gccaagatgc ggggattcca aggttcgatc aggaagccgt
      361 tgaccttgtc ggcgaccgtt tccctgtatc cggggacatc cgtcgtaatc actgccctgc
      421 cgacggccat tgcctcctga gtgcttcggg gaacgccttc cctataataa gacggcaata
      481 cgaatatatg atgttctttt atcacttcgg aaacattgtt cacaaaaccg gggaaacgga
      541 taatatcgcg ggcggcaagc cgttccaaat cgcccccccc ccgcgtgatt tgtcgattgc
      601 gcccaaagcg gtaaaaaccg tatcggggta tttgtcctta acctgttccg ccgcccgaat
      661 aaaatcatca atcccctttt ctttcagaaa tctgccgata aagaggaatt ttacgggttc
      721 tttttcatcg ggaatatccg cctcggaata aggatattgc cgcgaatcca gaccgattcc
      781 gcccaaaata tggatgtttt ttattttgat gccgtatttg tccgtcagtt cgtctttgtc
      841 gtcggggttt aatacaatca ggctttccaa catcggcagg gcaatgcggt ataaggcaat
      901 caagatcccc tttatgattt ttgtttttaa cggtatgcct tccggctgcg gggtaaatgc
      961 gaatcccaaa ccttccagca tcccgacgat tctgggcacg cctgccagtt ttgcggcaaa
     1021 agtgccgaaa atcacgggtt ttgcgaaata agggaaaacc aaatccggcg atattttttt
     1081 gagttcttta aagatgagga aggtggattt tatatcggaa aacgggttca gcccgctgcg
     1141 gtttgaacgg taggtaacgg gtgtaacccc catttccctg ataatatcca attcattatc
     1201 ggaaaactcc gatacaaagg catacacctg atggtttttg ccgattaatt ttttaatgac
     1261 gggggcgcgg aaaccgtaaa tgctggatgc gactgttgtg ataaaaacga ttttcataag
     1321 gcggacacct tgaatatgga ttggaaatgc ggtctgctac ggcagggttt catcctgtaa
     1381 cccagcaagg cttgggtttg cctgcgtatt atagtggatt aacaaaaacc ggtacggcgt
     1441 tgccccgcct tagctcaaag agaacgattc tctaaggtgc tgaagcacca agtgaatcgg
     1501 ttccgtacta tctgtactgt ctgcgtcttc gtcgccttgt cctgattttt gttaatcact
     1561 ataaaaatgc cgtctgaaac ggtttcagac ggcatttcga tgtcggcggc ggctttgcgg
     1621 aatcagcctt tgaagcgttt gaagaccagc gtgccgttgg tgccgccgaa gccgaaggag
     1681 ttggaaatgg caacgtcgat ttccgcgtcg cgcgcttcgt tggcgcagta gtccaaatcg
     1741 cagccggctt caacgtcttg ttcaaaaatg ttgatggtcg gcgggatttt gccgtcgtgt
     1801 atcgccaaaa tgctgtacac ggcctccacg ccgcccgccg cgccgagcag gtggccggtc
     1861 atggatttgg tcgagctgac gacggttttg taggcgtgtt cgccgaacgc gcgtttgagg
     1921 gctttggttt cgttggcatc gcccaagggg gtggacgtgc cgtgcgcgtt gacgtaatcc
     1981 acgtcttcgg gattgatgcc ggcatctttc agcgcgcggg taacggcaag ggcggggcct
     2041 tcttcgttcg gcgcggtgat atggtaagca tcggaactca tgccgaagcc gacgatttcg
     2101 gcgtagattt tcgcgccgcg ttttttggcg tgttccaatt cttccaacac caatatgccc
     2161 gcgccttcgc cgataacgaa gccgtcgcgg cctttgtccc acggacggga agcggtggcg
     2221 gggtcgtcgt tgcgggtgga gagggctttc atcgcggcaa aaccgcccac gcccaaagtg
     2281 ctgattgcgc cttccgcgcc gccggcaacc attatgtccg cgtcgccgta tttgatcagt
     2341 cgggcggaat tgccgatggc gtgcgcgccg gtggtacagg cggaaaccat cccgtagctc
     2401 gggccgcggt agcctttgag gatggtaacg tgtccggaaa tcaggttgat cagcgaaccg
     2461 gggataaaga aagggttgat tttgcgcgcg ccgccttcga ttacggcttt gccggtgacc
     2521 tcgatgctgg gcagtccgcc gatgccggaa ccgatgttca cgccgatgcg gtctttgtcg
     2581 aggttttcca catcgtccaa gcccgaatcg gcgattgcct gcaatgcggc ggcaatgccg
     2641 tagtggatga atacgtccat ccggcgcgct tctttcgcgc tgatgtattg tccgatgtcg
     2701 aaaccgcgca cttcgccggc gacacggctg ttgatgtcgg atgcgtcaaa gcgggtaatc
     2761 gcgccgatgc cgcttttgcc ggcgagcagg gtgtcccaag cctctgcgac agtgttgccg
     2821 acaggggaaa cctgacctaa gcctgtaatg actactcttc tctgactcat gataacctcg
     2881 ctgttggttg tcggaatggg ggcatatgcg gctgtcgtgc agatgccgtc tgtaatttgc
     2941 ggcaggggtt caaacagttt gccatataag ggaaaagcct ctattgcgcg gtgcagcaga
     3001 ggctgttgtg tcgggcgacg accggttagc cgttgtgggc attgatgtag tcgatagcca
     3061 gttggacggt ggtgattttt tcggcatctt cgtcggggat ttcgcagccg aatgcttctt
     3121 ccaaagccat aaccagctcc acggtgtcca aagaatccgc gcccaagtcg tcttggaaag
     3181 aagattcgtt tttcacgtcg gcttcgttta cgcccagttg ttcagcaaca atttttttaa
     3241 cttgttgttc gatgtttgac atatcagtcg ttcctttatg ccttgcggca ggttgtttaa
     3301 gggaaataaa tcggtggtat tgtaccgact tttaatagag ttttctatct aatgactatt
     3361 atatcaatat ttgccgattt gtacattttt gggtgcggcg ggttttgtcg ttcaagtttg
     3421 acctgtgtgc cgtatgtttg gcgggatttc ggttaaaatg gcggcatttc catctgaagc
     3481 agaaagccct gtcatgtatc cacttgcccg ccgcatcctg tttgcactcg atgccgaaaa
     3541 agcccaccac ttcacgctcg acgcgctcta cacggtttat aaattgggtc tgattcccgt
     3601 aaccggcaac cgtaccaaac ctgtaaaatt gatgggtatg gatttgccca accctgtcgg
     3661 acttgccgcc ggactcgaca aaaacggcga atacatcgac gcattgggcg cgctcggctt
     3721 tggtttcatc gaaatcggca cggtaacgcc caaaccgcag cccggcaacc cgcagccgcg
     3781 cctcttccgc gttcccgaac accaaggcat catcaaccgc atgggtttca acaaccacgg
     3841 tatcgacacc atgatacgca acatcgaaaa aagtaaattc agtggcgtat tgggcatcaa
     3901 catcggtaaa aacgcggtta cacccatcga aaacgctgcc gatgattatt taatctgcct
     3961 tgaaaaagcc tacgcacacg caagttacat taccgtcaat atttcctcgc ccaacaccaa
     4021 aaacctccgc gcgctgcaag gtggcgacga gttgagcgca ttgcttgagg ctttgaaaaa
     4081 caaacaggca cagcttgcct ctgtatacgg gaaatacgtt ccgctcgccg tcaaaatcgc
     4141 ccccgatttg gatgaagcac aaatcgaaga catcgcccac gttgtcaaat ccgtcgaaat
     4201 ggacggcatc atcgctacca ataccaccat cgacaaatca agtctcggca gccatccgct
     4261 cgcaggcgag cagggcggtt tgagcgggct gcccgttcat gaaaaaagta atcgggtgtt
     4321 gaagctgttg gcagaccaca tcgacggcaa gctgccgatt atcggcgtag gcggcattat
     4381 ggaaggcaag gatgcggcag ataaaatccg cttgggcgcg accgccgtcc aggtgtacag
     4441 cggattgata tacaaaggtc cggcattggt caaagaatgt ttgaaggctt tggcgcgatg
     4501 acgcgatccg cccaaaatgc cgtctgaacg cacgttttgc cgttcagacg gcattttcat
     4561 ttcctttttc cgcctgccgc cccttgaaaa tcccttacgc gccgccctgt ttgaaacaaa
     4621 gcaaacgccc gccgcgaacc ggacaatctt gatacgcagc caaagcaagt ccggcggtaa
     4681 gttgttaaat atataagcaa ttgataaaaa aaataatttt atgccgtggt ggacggtttg
     4741 agaaaacgca aaatatgaac ggcgttgaaa ttcatgatgt ggaaaataag gatacggcgg
     4801 ataatcaaaa gattttatat ttaaggattt gatatgttta aggacgaact aaatgaattt
     4861 atccgattga tatccgatcc ggaaagtgaa ttggatgaat ggtatttgag tgattttaaa
     4921 gatgaacata tatgggaaat gcaaagttac gaagcatttt catgtttgcg ggaagcagtc
     4981 ccctatttgt ttgcttatcc ccgatacggg tatgaactgt tggagataat ttccgcgtta
     5041 aaagaaacat ctgatacgac agaattattt tatgagccgg gtatcgtgcc tttgctgatt
     5101 gatttatata aagaagatag ttatctggta aatatggtca aacggatatt caaatgatga
     5161 aaggggcgcg ggcgtttgct tggcggaagg caggtaactc aatttgaagg acgcggaagc
     5221 cgatacgtta aaaaggatga aaaatggaaa acgggcaacg gaataaccgg tttcctttgg
     5281 aaaaacgaat tttttatctg gagcattcgg ggcggtatct gatgatttgc gccttatcgg
     5341 attattccca aaacaaacat actgtcgtta tggcaaattt catctatccg gatgaaaaaa
     5401 cggattggcg gaatttggat gatttattca atgagttggt tttagaggaa ttgcaggctt
     5461 catttatgga ttggcatccg actgttgaag aggcaatcag ccgtcatttg gaagactttt
     5521 cgtaacaggc gtcaatcgga aggggcggaa tgacggggca ggcaatcgga gtaaaaaatg
     5581 aaccttgatt taaccgcgca aaaagtccgt ctttcttgga aggatattct gtgggggtat
     5641 gggaataaat acttgggttg ggctgatgtg gcagcttatg cccgaaaaat gacgctttca
     5701 gatcatgatg aacgtgtgtt caaactatct ttaatcaaca aatccaatat tcttgaatta
     5761 aagcctgttc tggaagattt ggcttcggaa atgagggatt attcccctaa aaattggctg
     5821 tacgtcctct taagcgatgt attccataga aaagaagaat ttgaggatcc tttgggggaa
     5881 gttgaaaaaa tttatgcaga ttttgattat ccggaagaaa tagaatcatt tgtcaggtat
     5941 atgccgccca aagacggtta tattccttct gcccacacct atgaagaaaa tattgcccgg
     6001 ttatattctc actgggaaca ctatttgaac aacggcggag ggcagggtta aaaccggcaa
     6061 tccgatgccg tctgaagcat tatccggcct tcagacggca aacggattag agcggaagat
     6121 ttgaaagcgg gggcgggctg cattccggaa gcggcaaaac ccgaaccgcc cgcatcgttg
     6181 ccgataaacc gataaggaaa tcgttttgcc ggaccgggtg caaatgtttg ataacaatcc
     6241 tgccgcccgg caaaaatgct ttaaagaaag caggattggt taatttaaaa ggaaaaatta
     6301 aaaaatgacg gttgataagg aacaagtaga aaagatgatt tattctgaaa ataaacagag
     6361 tgttattgac ggtatgctcg gtatgacctt cagctcggag gaggatgaaa tcccctggat
     6421 ttccgagaag ttgacggagt tgtcgaaaca taaagacttg gatattgcca gattgtcatt
     6481 aacctgtttc ggacatctcg ccaggatgca tgaaaatatc ggcgattgcg ataaagtgat
     6541 tgctttattg ctctcaaaac aaggtgatcc ggattttcaa ggttttgccg aagatgcgtt
     6601 agacgagatt tctttattta tatttaaaaa gcgtccgtaa gcgcggatta aacctgtcaa
     6661 tccgatgccg tctgaagcgt tatccggctt tcagacggca tcgaaggttg ctatgatata
     6721 gtggcttgac tttaaaccgg tacggcatcc cctcgccctg tcctgatttg aagtgaatcc
     6781 gccatcatct tcctgccatt ttttcaaacg gaatccgaaa tgtccgacaa ccgcctcgac
     6841 accgcccgcc gccattccct cttcctcgcc cgccagctcg acaacggcaa actcaagccc
     6901 gaaattttcc tgccgatgtt ggacaaggtg ttgaccgaag cggatttcca agcctttgcc
     6961 gactgggaca aaatccgtgc ggaagaaaac gaggaagaat tggcgcggca gttgcgcggg
     7021 ttgcgccgtt atgtggtgtc gcagattatc gtgcgcgata tcaaccgcat cagcgatttg
     7081 aacgaagtaa cccgcacgat tacgctgttt gccgattttg ctgtgaatac cgcattggat
     7141 ttttcatacg cctattatca ggatatgtac ggcacgccga tcgggcgtta taccaaatcg
     7201 ccgcagcatt tgagcgtggt ggcgatgggc aaggcgggcg gctatgagtt gaacgtgtct
     7261 tccgacatcg atttaatttt tatctacccc gaatcgggcg ataccgacgg taggcgcgaa
     7321 cgcggcaatc aggaattttt caccaaagtc gggcagaaac tgattgcgtt gctgaatgac
     7381 attaccgccg acgggcaggt gttccgcgtc gatatgcggc tgcggccgga cggcgattcg
     7441 ggcgcgctgg tattgagcga aaccgcgctg gagcaatatt tgattacgca ggggcgcgaa
     7501 tgggaacgct acgcgtggtg caaaggccgc gtggtcacgc cgtatccgaa cgacatcaaa
     7561 tcgctggtgc gccccttcgt gttccgcaaa tatctggatt acggcgcgta tgaggcgatg
     7621 cgtaagctgc accgccaaat ccacagcgaa gtcggcaaaa aagggatggc ggacaacatc
     7681 aaactcggcg cgggcggcat ccgcgaagtc gaatttatcg cccagatttt ccagatgata
     7741 cgcggcgggc aaatgcgcgc gctgcaactg aaaggcacgc gggaaacgct ggaaaaactc
     7801 gccgaatcgg gcattatgcc gtctgaaaac gtcgaaaccc tgcttgccgc ctaccgcttt
     7861 ttgcgcgatg tcgaacatcg tttgcaatat tgggacgacc ggcaaaccca aaccctgccg
     7921 gcttcgcccg aacagcggca actgcttgcc gaaagtatgg gatttgatga ttacgccgat
     7981 tttttgaatg ctttaaatca acatcggaac caagtcaatc ggttgttcaa cgaaattctg
     8041 agcgaacccg aagaacaaac gcaaagcaac agcgaatggc aatgggtttg gcaggacaag
     8101 cccgacgaag aagaacggca aggccgtctg aaagaacacg ggtttgatgc cgaaaccatt
     8161 gccacgcggc tcgaccaaat ccgccacagc cataaatacc gccacctctc cgcacacgcc
     8221 cagccgcgtt tcgatgcggt tgtgccgctg ttcgtacagg cggcggcagc gcaaagcaac
     8281 ccgaccgata cattgatgcg gctgttggat tttctcgaaa acatcagccg ccgatccgcc
     8341 tatctcgcct tcctcaacga acatccgcaa accttggcgc aactggcgca gattatgggc
     8401 caaagttctt gggtggcggc gtatctgaac aaatatccga ttttgttgga cgaactcatc
     8461 agcgcgcagc ttttggatac cgcgtttgat tggcaggcgc tcgccgccgc cctttcagac
     8521 gacctcaaag cctgcggcgg cgatactgaa gcgcaaatgg acaccctgcg ccatttccaa
     8581 cacgcccaag tcttccgcct cgccgttcaa gacctcgccg gactgtggac ggtagaatcc
     8641 ctctccgacc agctctccgc ccttgccgac accatcctcg ccgccgccct gctgtgcgcg
     8701 tgggcggaca tgcccaaaaa acaccgcgac accccgcaat ttgccgtcgt cggctacggc
     8761 aagctcggcg gcaaagaact cggctacgcc tccgacctcg acttggtcta tctttacgac
     8821 gatccccatc ccgaagcagg cgacgtgtac agccgcctcg cccgccgcct gaccaactgg
     8881 ctttccaccg ccaccggcgc aggcagcctc tacgaaaccg acctgcgcct gcgccccaac
     8941 ggcgacgcag gtttcctcgc gcacagcatc gccgcctttg aaaaatacca gcgcgaaaac
     9001 gcgtggacgt gggaacacca gtcccttacc cgcgcccgct tcatctgcgg cacacccgaa
     9061 attcagacgg cattcgaccg catccgcacc gaaatcctta ccgccgaacg cgaccaaacc
     9121 gccttggcag acgaaatcat cgaaatgcgc gaaaaaatgt tccccactca tcccccagcc
     9181 gacagcaacg tcaaatacgc acgcggcggc gtggttgatg tcgaatttat cgtccaatat
     9241 ctgatacttg cccacgcccg aaaatatccg caactcttgg acaactacgg caacatcgcc
     9301 ctcttgaaca tcgccaccga ctgtggcctc atcgacaaaa cccttgcaga acaaagccgc
     9361 accgcctacc gcttctaccg ccggcagcaa cacaatacca aactgcgcga cgcagaaaaa
     9421 accgaagtaa gcggcgaatt gctggcacat tacggcaatg tcaggaaatt gtggcgggaa
     9481 gtgttcggcg aagaagcggc aaccgcctga ataaaaaatg ccgtctgaag cctgacaatc
     9541 tgggtttcag acggtatttt cgtaccgtgc cgttttaagg ttgcggcaga gctaaagcga
     9601 tttatcggga atggctgaaa cccaaaaacc ggattcctct ttcgcgggaa tgacgggatt
     9661 tcaggcttct gtttttgtgg gaatgatggg attttttatc caagcaaaaa tcaaaacaaa
     9721 caaataaga
//
LOCUS       DAXHNP010000072         9683 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.072, whole genome shotgun sequence.
ACCESSION   DAXHNP010000072 DAXHNP010000000
VERSION     DAXHNP010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9683
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.072"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(38..763)
                     /gene="aat"
                     /locus_tag="ACFM5C_001244"
     CDS             complement(38..763)
                     /gene="aat"
                     /locus_tag="ACFM5C_001244"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFC6068944.1"
                     /translation="MRIPLLAPDNYAFPDPAYALARCDGLVGVSRDLDAGRLLEAYRN
                     GVFPWFLRDGWFFWYAVGPRAVIVPERLHVPRSLEKTLRNCSYRVTVNGCFAEVVAHC
                     AAAVRPNQDGTWIAPEFQTAYLKLHEMGYAHSFECHYPDENGKTRLAGGFYGVQIGRV
                     FYGESMFALQPDASKIAFACAVPFLASLGVELIDCQQDTGHMRRFGSELLPFADFAER
                     LRMLNAVPLKEEIGRREVACKGL"
     gene            complement(833..1267)
                     /gene="fur"
                     /locus_tag="ACFM5C_001245"
     CDS             complement(833..1267)
                     /gene="fur"
                     /locus_tag="ACFM5C_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HFC6068945.1"
                     /translation="MEKFSNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRI
                     LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
                     EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
     gene            1494..1871
                     /locus_tag="ACFM5C_001246"
     CDS             1494..1871
                     /locus_tag="ACFM5C_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6068946.1"
                     /translation="MNKTLILVLSALFSLTACSVERVSLFPSYKLKIIQGNELEPRAV
                     AALRPGMTKDQVLLLLGSPMLRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
                     RTEGDVLQNAAEALKDRQNTDKP"
     gene            1881..2690
                     /gene="dapB"
                     /locus_tag="ACFM5C_001247"
     CDS             1881..2690
                     /gene="dapB"
                     /locus_tag="ACFM5C_001247"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFC6068947.1"
                     /translation="MTPLKIAIAGVNGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
                     LDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
                     FDDAGKAAIHTAAEQTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHK
                     VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
                     ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
     gene            complement(2804..3214)
                     /locus_tag="ACFM5C_001248"
     CDS             complement(2804..3214)
                     /locus_tag="ACFM5C_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068948.1"
                     /translation="MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFP
                     QEIPTPNYTDWVKIKFKQFSYLKFVYGYATKSQDINIDNTLELGELKQDDEILDYGGA
                     LELIGGRYDFPTAFRIDIVCREIELEFLDQEGFN"
     gene            complement(3216..3449)
                     /locus_tag="ACFM5C_001249"
     CDS             complement(3216..3449)
                     /locus_tag="ACFM5C_001249"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068949.1"
                     /translation="MKQHVLQKKGGEIVINGTSNNKYLRGIPNEGELARVGLRLKYNG
                     PLKEEFKQLKFHKSSRTNLDSKNLKLIVFEKVK"
     gene            complement(3470..4624)
                     /gene="lpxB"
                     /locus_tag="ACFM5C_001250"
     CDS             complement(3470..4624)
                     /gene="lpxB"
                     /locus_tag="ACFM5C_001250"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFC6068950.1"
                     /translation="MVDKKSPLIAVSVGEASGDLLGAHLIRAIRERCPQARFTGIGGE
                     LMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDF
                     NLGVAEKLKRTGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGR
                     AEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALL
                     LLERYPAARFLLPAATAATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAADAVLVTS
                     GTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQHDAV
                     PEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
     gene            complement(4690..5682)
                     /locus_tag="ACFM5C_001251"
     CDS             complement(4690..5682)
                     /locus_tag="ACFM5C_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6068951.1"
                     /translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
                     IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDA
                     LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSA
                     LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAH
                     TVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
                     ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKVGLPPDLAQFAVMLENGTKM"
     gene            6175..8934
                     /locus_tag="ACFM5C_001252"
     CDS             6175..8934
                     /locus_tag="ACFM5C_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HFC6068952.1"
                     /translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
                     IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQV
                     EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPN
                     GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
                     YFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAF
                     SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLR
                     DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
                     LGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLN
                     EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDE
                     SAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQA
                     APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
                     RNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETEMQTGKRRRNGSRSE
                     RSQTAPETAAVAETAVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
                     QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
                     ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAE
                     QARETAQTGGLVLIETDPAALKAWAAQPEVQTGRGLRRSEQPKPSEVATVPAEEMIQV
                     ETRQG"
BASE COUNT         2442 a         3075 c         2274 g         1892 t
ORIGIN      
        1 ccaccatatt tgaacctgac cgaagcataa gccgccatca aagccccttg cacgccactt
       61 cgcgccgccc gatttcctct ttcaacggca cggcgttcaa catccgcaga cgttcggcaa
      121 aatccgcaaa cggcagcagc tccgaaccga aacggcgcat atgccccgta tcctgctggc
      181 agtctatcag ttccacaccc aaagacgcga gaaacggcac ggcgcaggca aacgcgattt
      241 tcgacgcatc cggttgtaat gcgaacatcg attcgccgta aaacaccctg ccgatctgaa
      301 cgccgtaaaa cccgcccgcc aacctcgttt taccgttttc atcgggataa tggcactcaa
      361 acgaatgcgc gtatcccatt tcgtgcagct tcaaatatgc cgtctgaaac tcgggcgcaa
      421 tccaagttcc gtcctgattc gggcgcaccg ctgccgcaca atgcgcgacc acttccgcaa
      481 aacagccgtt gaccgtaacc cgatagctgc agttgcgtag cgttttctcc agcgagcgcg
      541 gaacgtgcag acgttcggga acaatcaccg cacgcggccc gaccgcatac caaaaaaacc
      601 aaccgtctcg caaaaaccaa ggaaacacgc cgttccgata cgcctcgagc agccgccccg
      661 cgtccaaatc cctgctcacg ccgaccagcc cgtcgcaccg tgccaaagca taggcaggat
      721 cgggaaaggc ataattgtca ggggcaagca gcggaatacg catggcagtt ctccaaaaac
      781 acagacggca tccaaaatca tgaatgccgt ctgaacaaca aaccgtccgg atttaacgtt
      841 tgcccttggc ctgacagtcg ctgcacacgc cgtacatata aagcgcgtga tcgacgatgc
      901 ggtagccgtt ttcctcggcg attttgtctt gcagggcttc gatttcggga ttgtggaatt
      961 ccgttacctc gccgcacttc acacagacga tatggtcgtg gtggtcgccc ttgtccaact
     1021 cataaaccgc cttgcccgtt tcaaaatggt ggcgttgcaa aatgcccgcc tgctcaaatt
     1081 gcgtcagcac gcgataaatc gtcgccacac cgatttccac accctcttcc aacaaaatac
     1141 ggtacacatc ctcggcactc aaatgctctt ccgcatgagt ctcgaacaaa tccaaaatct
     1201 tcaaacgcgg gccggtaact ttcagtccac tgtctttcag ttgcgcaatg ttgctgaatt
     1261 tttccataat attcaatatc cctgtaaaat aatagacgct ataatacgca atttcagcct
     1321 gcttgcccac tatcacacca tagcagtttg caatagcaaa accgcaacgg cggacgggca
     1381 gtcggacaca gacagggtga aataccgctt aagcgtatga ttatcgttcg cttttataaa
     1441 atattcaagc agtgctacac tagacatccc gatttgcaca gaaaggttct cccgtgaaca
     1501 aaaccctcat actcgtcctt tccgccctgt tcagcctgac cgcgtgcagc gtcgaacgcg
     1561 tttcactgtt cccctcgtac aaactcaaaa tcatacaggg caacgaactc gaaccccgcg
     1621 ccgttgccgc cctgcgcccc ggcatgacca aagaccaagt cctgctcctg ctcggcagcc
     1681 ccatgctgcg cgacgcattc cataccgacc gctgggacta taccttcaac acctcccgca
     1741 acggcatcat caaagaacgc agcaatctga ccgtctattt tgaaaacggc gtactcgtcc
     1801 gcaccgaagg cgacgtcctg caaaacgctg ccgaagccct caaagaccgc caaaacacag
     1861 acaaaccata aggaacacac atgacaccgc tcaaaatcgc tatcgccggc gtcaacggcc
     1921 gcatggggcg cgtattggtt gaagccgtca acaaccatcc cgacaccgtc ctttccggcg
     1981 cgctcgaaca ctcgggctca gaagccctcg ggctggacgc aggctacgcc gtcggactca
     2041 aaaccggcat cgccatttca gacgacgttg acgccgttct cgcacaaagc gacgtactca
     2101 tcgacttcac ccgccccgag cccaccctca aacacctgca aaaatgcgtt gaaaaacaag
     2161 tcaacatcat catcggcaca acaggcttcg acgatgcggg caaagccgct atccacactg
     2221 ccgccgaaca aacaggcatc gttttcgccg ccaacttcag cgtcggcgtc aacctcacct
     2281 tccacatcct cgacaccgtc gcacgcgtat taaacgaagg ctacgacatc gaaatcattg
     2341 aaggccacca ccgccacaaa gtcgatgccc ccagcggcac cgcgttacgc atgggcgaag
     2401 tcatcgccgg cgcgctcggc agagacctca aacaatgcgc cgtttacggc cgcgaaggcc
     2461 acaccggtcc gcgcgatccg tcgaccatcg gctttgccac cgtccgcgca ggcgacatcg
     2521 tcggcgacca caccgccctc ttcgccaccg acggcgagcg cgtggaaatc acccacaagg
     2581 ccagcagccg catgaccttt gccgccggtg ccgtccgcgc cgcagtttgg gtaaacggca
     2641 aaacgggttt gtacgatatg caggacgtac tcgggctgaa caaccgttaa cccccataca
     2701 aaatgccgtc tgaaaagata ttgttcagac ggcattttgc caacaggctc cgtatcggca
     2761 tatcaataaa gttgcttgcg cggcatgaca agctacggct cgtttaattg aaaccctcct
     2821 gatctaaaaa ttctaactct atttcccggc aaactatatc tatcctaaaa gcagtcggaa
     2881 aatcatacct accgcctatc aattccagcg cacctccata atccaagatt tcatcatcct
     2941 gctttaattc gccaagttcc aatgtattat cgatatttat atcttggctc tttgtagcgt
     3001 atccatagac aaatttcaga tagctgaact gcttgaattt aatttttacc cagtctgtat
     3061 aatttggtgt aggaatctct tgaggaaagt ccggataatc cacattctgg acgatgatat
     3121 ggaattcatc gtttttcaaa gtatagttta atagagtgcc ctcatatata tacagaaatt
     3181 gataatcttt ttttggaatg gtataagttg tcatattatt ttaccttttc aaaaacaatg
     3241 agtttaagat tttttgagtc caagttggtt ctactactct tatgaaattt cagttgttta
     3301 aactcttcct ttaacggccc attatatttt aaccttaatc ccactcgagc cagttctcct
     3361 tcatttggaa ttcctcttaa atacttattg tttgatgtgc cattaatcac aatttctccc
     3421 cccttttttt gtaatacgtg ctgcttcaag aagataatcc attaaccgct caacatcccg
     3481 cctcttccaa aaccgcgcgc gcggccaaat ccgccgtatc ttttttcaac agcaggtgca
     3541 acgccctgaa atcctgttgc agcgcggcaa ccttatcggg gtgttcgtac cagtccgcca
     3601 acgccgccgc cagtttttcc ggtacggcat catgttgaag cagctccggc acagcctcct
     3661 tacccaacag gatattcggc aggccgacat gcggcacttt gattttgcgt ttcacataag
     3721 cataagtcag cggcgaaatc ttgtagctga tgaccatcgg acgcttgcac agagccactt
     3781 ccaaagttgc cgtaccgctc gttaccagca ccgcatccgc cgccctgcac actgtttcag
     3841 actgtctgtc gattaccgtc agcggcaatc cggcaaactc cggccgctgc aaaacttccg
     3901 ccaaacgccg cttcgtcgcc gccgttgcgg caggcagcag gaagcgtgcg gcaggatagc
     3961 gttccaacaa caataatgcc gtctgaaaaa acaccggcgc catatagtcg atttcgctga
     4021 cgcggctgcc gggcagcagg gcgaatacgg ggatgccggc atccacgccc aaagttttcc
     4081 gcgccgtttc acggtcgtct tccaagggca taagctgcgc catcggatga ccgacaaact
     4141 ccgcacgtcc gcccgcatcg agataaagct gcggctccat cgggaacagg cacagcacgc
     4201 ggttgacctg atgcacgatt ttgcccacgc gttcccgccg ccacgcccac accgacggac
     4261 tgacataatg cacggtcgga atgcccgtcc gtttcagctt ttccgccaca cccaaattga
     4321 aatcgggcgc atcgataccg acaaagacat caggtttcaa cgacagcaaa tcccgtacca
     4381 gccccctgcg tatccgtaaa atttccggca gccgcctgac cacttcgaca aagccgcgca
     4441 ccgccagccg ctcctgatca taaaggctct cgaaaccttc cgccttcatc agttccccgc
     4501 cgataccggt aaaccgcgcc tgcgggcaac gctcgcggat ggcgcgtatc aggtgcgccc
     4561 ccaacaggtc gcccgacgct tcgccgacac tgacggcaat caaagggctt tttttatcaa
     4621 ccatattcgt tcttcttcac atactttcac gtcccgatgc cgtctgaagg cttcagacgg
     4681 catcggggtt cacattttcg tcccgttttc caacatcacc gcaaactgtg ccaaatccgg
     4741 cggcagcccc acctttaaca ccagcggctc gcccgtgagc ggatggttca ggtgcagctc
     4801 ggacgcgtgc aaaaacatcc gcttcaaacc caacttctgc aaacgacggt tcgcctgata
     4861 atcgccgtag cgttcgtcgc ccgcaatcgg acagccttga gattgcaggt ggacgcggat
     4921 ttggtgcgtg cgccccgttt tcaacgtcgc ccgcaccaaa gtcaggtgcg acagcccgac
     4981 accgtgcaaa atgccgtctg aaaaacggct taacacacgg aacaccgtat gcgccgactg
     5041 cccgtccgca ctgacgcgca ccatcttttc gccttgtgcg ccggtatatt tgaacagggg
     5101 cagtttgaca tggaaattgt cgtccggcag tttgcccacc cccagcgcaa ggtagatttt
     5161 tttggggtgg tcgttacgga tggcttcgtg aagtttgacg agcgcgctgc gtttcttcgc
     5221 caccatcaac aagccgctcg tatccttgtc caaacgatga accaactcca aatacttcgc
     5281 ctccggacgg gcgcggcgca actgttcgat aacgccgaaa ctcacgccgc tgccgccgtg
     5341 gacggcaacg ccggacggtt tgtcgatgac caaaagcgca tcgtcttcgt aaacaacgtc
     5401 aaacgcacgc gccggtacgg cggcacgcct ttcagacggc atttccttct ccgccacgcg
     5461 cacaggcgga atccgcaccg tatccccctc cgcaatacgg ctgtcgggtt tgcagcgttt
     5521 cttgttcaac cgcacctcgc cggcgcggat aatgcggtgg atatggctct tgggaacacc
     5581 cttgaggatt tttatcagat agttatcaag gcgttgaccc gcctcatgtt cggcaacccc
     5641 tatcaagctg accgaatctt tgcttatttc gtgcgttttc atctataatc cgaacatccg
     5701 tttcagcaaa aagcgcgccc gccgcgcctc ctgaaacggt ttactttaaa acggaatttt
     5761 atattaaaaa cgcactccgc aaagcatttt ccctgcgcct gttcccagcc ggcaggcgca
     5821 gaacgtaatc aagtttgaat tgattttgcc gtttcggcgc ggaagtaaga cggcagccgg
     5881 gcccaagtcc caaacgcaaa ccgcccaaaa cacaggcatc acgataacaa gaagaagccg
     5941 gcccccattt ttccgaccgc agcgttcgga acgcggcaga caaaccgccg catcgatctt
     6001 tatagccttc tgtatccgac ccttccgcac acggttctcc ggaacgtgca tccctgcgga
     6061 ttttcaactc aaaaactgat taccggtttt atccgaaaac atcggaaaac ccagccttac
     6121 ggaatgccga accgggcatg tgccgtctga acgccgcctg cccacgaggt gatcatgaaa
     6181 agaatgttat ttaacgcaac gcaggccgaa gagctgcgcg ttgccatcgt cgacggacaa
     6241 aacctgctgg atttggacat cgaaacgctg ggcaaagaac agcgcaaagg caatatctac
     6301 aaaggcatca ttacccgcat cgagccgtcg ctggaagcgt gtttcgtgga ttacggaacc
     6361 gaccgccacg gcttcttgcc gtttaaagaa gtctcccgct catacttcca agactacgaa
     6421 ggcggacgcg cgcgcatcca agacgtgctc aaagaaggca tggaagtcat cgtccaagtc
     6481 gaaaaagacg agcgcggcaa caaaggcgcc gcgctgacca ccttcatcag cctcgccgga
     6541 cgctatctgg tattgatgcc gaacaacccg cgcggcggcg gcgtatcccg ccgtatcgaa
     6601 ggtgaagagc gtcaagagtt gaaagccgcc atggcggaac tcgacattcc gaacggcatg
     6661 agcatcatcg cccgtaccgc cggcatcggc cgcagcgcgg aagagttgga atgggacttg
     6721 aactacctca aacaactctg gcaggcgatt gaagaagcag gaaaagcgca tcacgacccc
     6781 tacctgctct ttatggaaag ctcgctgctg atccgagcca tccgcgacta tttccgcccc
     6841 gacatcggcg agattttggt ggacaatcaa gaagtttacg accaagttgc cgagttcatg
     6901 agctacgtca tgccgggcaa tataggccgt ctgaaactct acgaagacca cacgccgctg
     6961 ttttcccgct tccaaatcga acaccaaatc gaaagcgcgt tttcgcgcag cgtcagcctg
     7021 ccctccggcg gcgcgatcgt catcgaccat accgaagccc tcgtctccat cgacgtgaac
     7081 tccgcacgcg ccactcgcgg cgcagacatt gaagacaccg cgttcaaaac caatatggaa
     7141 gccgccgaag aagtcgcccg acaaatgcgc ctgcgcgact tgggcggctt ggtcgtcatc
     7201 gacttcatcg acatggaaaa ccccaaacac cagcgcgatg tggaaaacgt cctgcgcgac
     7261 gcgctcaaaa aagaccgcgc ccgcgtgcag atgggcaaac tctcccgttt cggactttta
     7321 gaattgagcc gccaacgttt gaaaccggct ttgggcgaaa gcagccacgt cgcctgtccg
     7381 cgctgcgccg gcaccggcgt gattcggggc atcgaatcca ccgccctgca cgttttacgc
     7441 atcattcaag aagaagcgat gaaggacaac accggagaag tgcgcgcaca agtgcccgtc
     7501 gatgtcgcca ccttcctgct gaacgaaaaa cgcgccgagc tgtttgcgat ggaagagcgt
     7561 ttggatgtca acgtcgtcct gattccgaac atccacctcg aaaatccgca ctacgaaatc
     7621 aaccgcatcc gcaccgacga cgtagaagaa gacggcgaac cgagctacaa acgcgtcgcc
     7681 gagccggaag aagacgaatc cgccaaaccg ttcggcggcg aaaaagccaa agccgcccgt
     7741 cccgaacccg ccgtcaaagg cgtgcgccac accagccccg ccccgactgc cgcccccgag
     7801 aaaaaaacct cttggtggga cagcttcaaa gcatggctca aacgcatttt cggcggcagc
     7861 gaaacccaag ccgcgcccgc tgccgaaacc tccgaaaaac gcagcacggc aaaccgcagc
     7921 ggcagccgcg ccaacaaccg ccgccaaaac ccgcgccgca gcaaacgcga aggcagcaaa
     7981 gtagaagtcc gcgaagtggc aggcaaaact gccggacagg aagcgcgtgc cgacaaagcc
     8041 gaaacgcgca acaacggcaa ccgccgccgc aatgaacgcg gcgaccgtgc cgccgaacgc
     8101 gccaacgaag cggaaatcca aagccgcaac gtacagcctg ccgcaaccgt tgcagatgcc
     8161 gcaccgtccg aaaccgaaat gcaaaccggc aaacgccgcc gcaacggcag ccgcagcgaa
     8221 cgcagccaaa ccgcgccgga aaccgccgcc gttgccgaaa cagccgttca gacagcggaa
     8281 aacacgccgt ccgaaccgca taccgcagaa gacaaaggca gcaagcccaa atccgaacgc
     8341 aaccgccgcg aacgcgacag ccgcgacgcc aaagaacgcc gcgagcgcaa caatcagcgc
     8401 gaccgccgtc aaaacggcaa aaaacgcaat atcccgtctg ccgccaaaat cgagcagtac
     8461 ctgaatattc acgacaccgc cgacaaagtc cgttccgccg ccgcgcacgt tttcggcgaa
     8521 accgacgcaa acgcgccgat taccgtcagc attgccgatc cggttgcaga aagggatctt
     8581 ccgacagcat ctcccgccgt ttcaaacggc gacgcaccgg tttatgatgc ggcggaaaaa
     8641 atccgccgtg ccaccgccgc catcctgccc gaaggcgcga caccgaaagc cgaagcacag
     8701 gaaatgccgt ctgaaaccgc aacctttacg gctgcggcgg aacaggcacg ggaaaccgca
     8761 caaaccggcg gactcgtcct gatcgaaacc gaccctgccg cattgaaggc atgggcggca
     8821 caacccgaag tccaaaccgg acgcggtttg cgccgttccg aacagcccaa gccgtctgaa
     8881 gtcgcaaccg tccctgccga agaaatgatc caagtcgaaa cccggcaagg ctgaaccgac
     8941 ggcggcaaaa agaggttctg ttccgcagaa cctctttttt atatagattc ggatacctgc
     9001 aatgccgtct gaagcctcac cattcccatg attaccgcaa cctttcgtca ttcccgtgaa
     9061 aacgggaatc tagaacctca aactttcaaa taacctttga atattgccgc tgccttaagg
     9121 tctggattcc cacctgcgcg gaatgacggt ttagaagttg cccgaaacct caaaaaaaac
     9181 tgaaaccgaa caagccggat tcccgcaaca ttccgtcatt cccgtgaaaa cgggaatata
     9241 gaaccccaaa ctttcagata atctttgaat attgccgtcg cccaaaggcc tggattcccg
     9301 cctgcgtggg aatgacggcg gagggtggac gatgccgtct gaaacttcgc cattcccatg
     9361 attaccgcaa cctttcgtca ttcccgccac ctttcgtcat tcccgtgaaa acgggaatat
     9421 agaacctcaa actttcagat aatctttgaa tattgccgcc gcccaaaggt ctggattccc
     9481 gcctgcgcgg gaatgacggc ggagggtgaa cgatgccgtc tgaaacttca ccattcccat
     9541 gattaccgca acctttcgtc attcccgtga aaacgggaat ctagaacctc taaactttca
     9601 gataatcttt gaatattgcc gtcgcccaaa ggcctggatt cccgcctgcg cgggaatgac
     9661 ggtttagaag ttgcccgaaa cct
//
LOCUS       DAXHNP010000073         9649 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.073, whole genome shotgun sequence.
ACCESSION   DAXHNP010000073 DAXHNP010000000
VERSION     DAXHNP010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9649
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.073"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(774..881)
                     /locus_tag="ACFM5C_001253"
                     /pseudo
     CDS             complement(774..881)
                     /locus_tag="ACFM5C_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(1237..1905)
                     /locus_tag="ACFM5C_001254"
     CDS             complement(1237..1905)
                     /locus_tag="ACFM5C_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6068953.1"
                     /translation="MKNLAIFDLDNTLINTDSDHAWPQYLIKKGLVDAAETEAQNEKF
                     YRDYQNGCLDIDAFLKFHLAPLARYSKEELAEFHREFMAEYIIPHISPMQRMLVQSHQ
                     MAGDETLVISSTNEFIITPVCRLFGITNIIGTQLETGSDGRYTGNYIGTPSLKEGKIT
                     RLNQWLAERGETLQSYGKTYFYSDSKNDLPLLRLVSEPVAVNPDAELEKEAKEKGWPV
                     LNFK"
     gene            complement(1902..2570)
                     /gene="hda"
                     /locus_tag="ACFM5C_001255"
     CDS             complement(1902..2570)
                     /gene="hda"
                     /locus_tag="ACFM5C_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HFC6068954.1"
                     /translation="MNQLIFDFAAHDYPSFDKFLGTENAELVYVLRHKHGQFIYVWGE
                     EGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQAL
                     LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA
                     SMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQ
                     QETQ"
     gene            complement(2675..3265)
                     /locus_tag="ACFM5C_001256"
                     /pseudo
     CDS             complement(2675..3265)
                     /locus_tag="ACFM5C_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707572.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3475..4192)
                     /locus_tag="ACFM5C_001257"
                     /pseudo
     CDS             complement(3475..4192)
                     /locus_tag="ACFM5C_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173203.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
     gene            4414..4617
                     /locus_tag="ACFM5C_001258"
     CDS             4414..4617
                     /locus_tag="ACFM5C_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HFC6068955.1"
                     /translation="MKKKQESMTDWHRADIVARLKKAGWSVRALSIEANLAPNTLGKA
                     LDAPYLKGERIIAAAIGVPAEEI"
     gene            4739..6727
                     /locus_tag="ACFM5C_001259"
     CDS             4739..6727
                     /locus_tag="ACFM5C_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFC6068956.1"
                     /translation="MKISASDIAKLGIPSLPTDRQGIEYHAKKNNWQHCFEQKGRGRP
                     KKLYEIASLPAEIRAAIMKRQSDELAEKMPKMLPQVRPGTAMSAQALAEAAKLLNEKQ
                     RSVADARCAVVAAVLGIKYEYDCSAKAAVAQFLGLLAEGKLDAVTLGNLEKANDRSRS
                     AKVGERTLDGWISAYLKAENAIERLVALAPKTTKAVKPIESYGWLPMFMRFHNIPSAP
                     KLAHSYRRFVQWAEAENMPVNDVPNLSMVRRVWDKLPLIMQERGRKTGAAYKSLLPYV
                     KRDWGALKPNDVWIGDGHSFKAKVAHPVHGRPFKPEVTVIIDGCTRFVVGFSVSLAES
                     CVAVSDALRIGVKHFGLPIIYYSDNGGGQTGKTIDHEITGITSRLGIRHETGIAGNPQ
                     GRGIIERWWKDNLIEMARQYETFAGAGMDSSTKNLMYRKMESAFNALEKGKDLTEEQQ
                     KYLKKLPSWSRFIADVVKCIDDYNNRPHGELPRHPDGGHYSPKAYREIRLEQDGIAPD
                     MLSAEELATMFMPQEVRKVQRGWLDLFSNSYFSTELAEYHKDEVRVSYDLSDASAVNV
                     FDMDGKFITKAQANGNTREAFPTARIDQLAEKRRKGKIKRAENAIKLANAEVNPALEQ
                     AAAWDELGHLGGNVIEAEYAVLPKTGTDDGIFLFEADM"
     gene            complement(6794..7051)
                     /locus_tag="ACFM5C_001260"
     CDS             complement(6794..7051)
                     /locus_tag="ACFM5C_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HFC6068957.1"
                     /translation="MKEFPDLEKRLIMLEVAVQDLEERSLTDSFVLAWLLQRITRQEP
                     TSIEQVRSFLQAQAKTFEPDSVQREHLESLLEIVESAQGLA"
     gene            7097..7855
                     /locus_tag="ACFM5C_001261"
                     /pseudo
     CDS             7097..7855
                     /locus_tag="ACFM5C_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241524.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            7829..8269
                     /locus_tag="ACFM5C_001262"
     CDS             7829..8269
                     /locus_tag="ACFM5C_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HFC6068958.1"
                     /translation="MAKAALPDAVKHLLPDSVQALITVIGFNETLELVRLMGGTTYPL
                     RQGYTKNSQSRVAYLEEIIGSEAAGRLVEAMAPCNLFIPRCETALYELRNRKIRSQFD
                     RQTAGGTPAYEAVNDLALAHRLSDRHVWRILKQADKEAEQENLF"
     gene            8316..8792
                     /locus_tag="ACFM5C_001263"
     CDS             8316..8792
                     /locus_tag="ACFM5C_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068959.1"
                     /translation="MKKFYFVLLALGLAACGQEQSQKADAEQYFFANKYQFADEKQAF
                     YFERAARFRVLQQGLGGDFERFLKGEIPNQENLAKYRENITQAVAYYADTNGDDDPYR
                     VCKQAAQDAEILMKSMVTSGGGGTTDLDKESYQNYRKSMQECRKTITEAEANLPKK"
     gene            8935..9480
                     /locus_tag="ACFM5C_001264"
     CDS             8935..9480
                     /locus_tag="ACFM5C_001264"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6068960.1"
                     /translation="MSKIICLTAGHSNTDPGAVNGSDREADLAQDMRNIVASILRNDY
                     GLTVRTDGEGKGNMPLRDAVKLIRGSDVAIEFHTNAAANKTATGIEALSTPKNKRWCQ
                     VLGKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTT
                     KWGICRAIADAIAMELGATKV"
BASE COUNT         2531 a         2011 c         2662 g         2445 t
ORIGIN      
        1 acaaaaacag aaacctaaga ttcatcattc ccgccgggaa tctggttttt tgaaatccgg
       61 ttgtttggga taaattctcc ggctttgatt ttctgttttt ccgataacgc cataactttg
      121 aaatttcgtc attcccgcgc aggcgggaat ccagacctgt cggcacggaa acttatcggg
      181 aaaaaaagtt tctttagatt ttacgtccta gattcccact ttcgtgggaa tgacgggatg
      241 tgggtttttg tgcggatttg aaccggtaag ggtggtgtgg gattggtggt ttacttagga
      301 tcttttggat tgtattttgt atatatattt acttgttgat aaaagataaa ataaaattag
      361 aaactaaaag tgagaaaaaa ttaataataa tagggatgta taaatgtaaa ggctccgttt
      421 catagctaag gttatctgaa tatatggaaa aaaagtaaaa gtccataaaa gtaaaatata
      481 tagataatac taatgataat agaattatca ctttcctaga gtaaggataa tattttttta
      541 tgataaaaaa atataaaata ggataaataa ttgccatata gatagatttt gtagcaaaat
      601 taaaaataaa taataaaaat aatgtaataa agtatatttt ttggctatga aataaaattg
      661 tacataattg aacgagcaga tcaaaaaatg aactacatat aacaataaat aataacatat
      721 ttaccatact aaatttaata ggtctcatta tcatatttaa taaccacttc atagtatagt
      781 ggattaaatt taaaccagta cagcgttgcc tcgccttgcc gtactatctg tactgtctgc
      841 ggctttgtcg ccttgtcctg atttaaattt aatccactat aaatgcagag tgggtggaaa
      901 cactcacttt atggtttgct acgctctgct caattagcaa cccgataacc caatatggat
      961 aatagggtaa ttaatccaat ctaatttgtc agcatccgtt aatttattgc aaaataaagt
     1021 attgaattat gtcgggtgca aatgacgaaa tataagtttc cgtgcggacg gatcaagatt
     1081 cccactttcg tgggaatgac ggtggaaaga ttgttgtttt tcccgatgaa ttcctgtgtt
     1141 ttttgttttt ccggataaat tcctgtggct ttgagttttt tggatttcag cctcaatgcc
     1201 gtctgaacgc cgaatcgggc ttcagacggc attgcgtcat ttgaaattca aaaccggcca
     1261 gcctttttct ttggcttctt tttccagctc ggcatcgggg ttgacggcga cgggttcgct
     1321 gacaaggcgc agcagcggca agtcgttttt ggagtcgctg taaaaatagg ttttgccgta
     1381 gctttggagc gtttcgccgc gttcggcaag ccattggttc aggcgggtga ttttgccttc
     1441 tttgaggctg ggcgtgccga tgtaattgcc ggtgtagcgg ccgtcagaac cggtttcgag
     1501 ttgtgtgccg atgatgttgg tgatgccgaa aaggcggcag acgggggtga tgatgaactc
     1561 gttggttgag gaaatcacaa gggtttcgtc gcctgccatt tggtggctct gcaccagcat
     1621 acgctgcata ggcgagatgt gggggatgat gtattccgcc ataaattcgc ggtgaaattc
     1681 cgccagctct tctttgctgt aacgagcgag cggggcgagg tggaatttga ggaatgcgtc
     1741 gatgtcgagg cagccgtttt ggtagtcgcg gtagaatttt tcgttttgcg cttcggtttc
     1801 ggcagcgtca accaagcctt ttttgatgag gtattgcggc caggcgtggt cggaatcggt
     1861 gttgatgagg gtgttgtcga ggtcgaagat ggcgaggttt ttcattgggt ttcctgttgt
     1921 ttcaaaagct ggcgcaaaag cggcagggtg atgcgtttgc ccattgtgac ggcgtagttg
     1981 tccagcgtgt cgagcatcat catcaggctg tccatatcgc gccgccagtg tttgagcagg
     2041 tattcgaaaa tttcggaatc gacggttact tggcgtgccg ccgccatact ggcgagcgcg
     2101 tcgatttttt cttggtcggt taagggcttg acttcgtaaa cgaggcagta cgccatacgc
     2161 gtccgcaaat cttcgcggat gacgagctgc tggggcgtgt attccgaacc gagcagcaaa
     2221 aagcctttgc cgctgttgcg gaagcggttg aagatggaaa aaagcagggc ttgttcttcg
     2281 ttgcccagct tttcgacttg atcgacggcg aggtattccg cctcgaacgc ggcatcggtc
     2341 agcggcatgg aggcggcatc gatataggcg gcgtttttgc cggcttcgag cgcctgtgcg
     2401 acccacgcct gcaaaagatg gcttttgccc gcaccttctt caccccagac atagataaac
     2461 tgtccgtgtt tgtgtcggag gacatagacc agttccgcgt tttccgtgcc gaggaatttg
     2521 tcgaaactcg gatagtcgtg tgcggcaaag tcgaaaataa gctggttcac ggttcggcat
     2581 tccgaggggt ggtaaacggg tttattgtac gttgttttcg cgtgctttat caatttgaaa
     2641 aatgccgtct gaaaacggct tcagacggca tcgttcaacc gcaggcaacg ttgccgacat
     2701 cgaggtgcat attgtggaac gcgttgagcg tgctgcggtg gccgatgctg atgatgatgc
     2761 tgtcgggcag tttttgtttc agtgcgcggt agagcagggc ctcggtcggt tcgtccaaag
     2821 cggcggtggc ttcgtcgagc aggacgattt tgggcttgga aagcagggcg cggacgaagg
     2881 cgacgcgttg cagttcgccc ggggagagtt tgtgctgcca gtcgtctgtt ttgtccaatt
     2941 tgtcaatcag ataacccaag cggcaggtgt tcatggcttc ggctaactcg ggatgctgtt
     3001 tgtcgatgtc cggataacaa accgcgtcgc gcaggctgcc ctgtgccgtg tacgggcgtt
     3061 gcggcaggga gaggatgtct tgatgcggcg gacggctgac tttgccgctg ctgccgaacg
     3121 gccaaagccc agccagcgcg cgcagcagcg aggttttgcc gcaaccgctc gggccgcgta
     3181 tcagcagcga atcgccgctt ttgagtttga tgttgatgcc gtccaataaa acttcgccgt
     3241 tgtggcggaa cagggcgacg ttttcctgtg ggggactgtt agtttttgca caaggaacaa
     3301 atagagtaaa aaaacgctga aatcttcgga agacgtggat ttcggcgttt ttttgtatcc
     3361 ggaaaagtta cgccagcttt ttcacaaaac cgcgccggaa tgcgcggttt tctgtttaaa
     3421 gctgacgaga ttagggaatt tttaaaactg ttttaagagg tttttaaaat ggatttaatc
     3481 aatactccgg ccataccact caacacggcc tatgatggcg atgtcgtctt gggcattgct
     3541 caaatctatt tcaaacggtg cgtaacgtgg attttcagac gttacaagca gtttgcccgg
     3601 tatacgttgc acacgtttga caaagaggtc attgcctata cgcaagacat ataggccgtc
     3661 acgcgggtca gtttcggcgt ggttgatgag aatggaatcc ccatgattga gcacgccctc
     3721 cattgaatcg cctttaacgg taattacaga cagtttttcc ggctgtttgg tcacatagtt
     3781 gtcaatccaa tatttccgga aagccaagca gaataaaggt tcttcgccga agactggtgc
     3841 gccataccct gctgctgcgg ctacgttgta gcgcggcacg aatacaaact cggacaggtc
     3901 gacgattgcc catagtgtcg gtgattccat cagaatttct acttacagag aatgctccgg
     3961 cgttttccgg cctggcttta tcgagatacg gcaagccttt tccggtcagc agccagttta
     4021 aatcacaacc ggtaacttct tgaattttta ctaggtaatc ggctgttggg atagctccct
     4081 ctttccaaac tctattaaat ccagaagccg acatttctat tttgttatag atgtcagatg
     4141 gcttagcccc atgaggccaa agaaatttga gcctatctaa aaaagtatcc atagtaatcc
     4201 taatttaact catttaagca aaacattaag caaaaaaaga aactcttttg cttaaataag
     4261 attactcaaa taatcaatat tttgtaaaaa taattacgtt tttgagaaaa tattttagca
     4321 aaagagtttc atgaagctgt tttgctaaat gtaattcact catttgctaa atgacggcgg
     4381 ttaataaacc tacttaatta aggaattgcg agaatgaaaa aaaagcaaga aagcatgact
     4441 gattggcatc gtgctgacat tgtggctcgt cttaaaaagg caggctggtc tgtgagagcg
     4501 ttatctatcg aggctaattt agcaccaaat acattaggga aagctttaga tgctccttat
     4561 ctgaaaggcg aaagaatcat tgcagcagcg attggagtac ccgcagaaga aatctagcca
     4621 tctcgttttg agaaacgaaa ccataagcca accttcccaa gatctataaa tagataactg
     4681 ttttgctaaa tagttccaaa agagtaccgc atttaagcaa aaatagaaag cggaaaaaat
     4741 gaaaatatct gcatctgata ttgcgaaatt aggaattccg agcctaccaa ctgatagaca
     4801 agggattgaa taccatgcca agaaaaataa ttggcaacac tgttttgagc aaaaaggaag
     4861 aggccgtcct aaaaaactgt atgaaatcgc ttccctccct gccgaaatcc gagcagccat
     4921 catgaaacgg cagtcggacg agctggcgga gaagatgccg aaaatgctgc cccaagtcag
     4981 accggggacg gcgatgtcgg ctcaggcact ggctgaagcg gccaagctgt tgaacgagaa
     5041 acaacggtcg gtggcggatg cgcgatgtgc ggtggtggcg gcggtattgg ggattaaata
     5101 cgaatacgat tgctctgcca aggctgcggt ggctcagttt ttgggcttgc tggcagaagg
     5161 taaattggac gcggtcacgc ttgggaactt ggaaaaggcc aatgaccgca gccggtcggc
     5221 gaaggttggc gaacgtactt tagacggctg gatttctgct tatttgaaag cggaaaacgc
     5281 gatagagcgg ttggttgctt tggctccgaa gacgacgaag gcggtcaagc cgattgagag
     5341 ctacggttgg ttgccgatgt ttatgcggtt tcacaacatc ccttcggctc cgaaactggc
     5401 gcacagctac cgccggtttg tgcagtgggc ggaagcggaa aatatgccgg tcaatgatgt
     5461 gcctaatttg agtatggtgc ggcgcgtttg ggacaagctc ccgctaatta tgcaggagcg
     5521 cggcaggaaa acgggggcgg cttataaatc gctgctgcct tatgtgaaac gtgattgggg
     5581 ggctttgaag ccgaacgatg tttggatcgg cgacggccac agctttaagg cgaaggtggc
     5641 acaccctgta cacggcaggc cgtttaagcc ggaagtgacg gtgattattg atggttgtac
     5701 gcggtttgtg gtcgggtttt cggtttcgtt ggctgaaagt tgtgtggcgg tatcggatgc
     5761 tctgcgtatc ggggtcaagc attttggttt gccgattatc tattactcgg ataacggcgg
     5821 cggccaaacc ggcaagacga tagaccatga aatcacgggt attacgtccc gactgggtat
     5881 ccgccatgaa acgggtatcg cgggcaaccc gcaaggtcga ggcatcatcg agcgatggtg
     5941 gaaagacaat ctgattgaga tggcgcgcca gtatgagacg tttgcgggcg caggaatgga
     6001 cagtagcacg aagaatctga tgtaccgcaa gatggaaagt gcgtttaacg ctttggaaaa
     6061 aggcaaggat ttaacggagg aacagcaaaa atatttgaaa aaactgccga gctggtcgcg
     6121 ttttatcgcg gatgtggtca agtgtatcga tgattacaac aaccgtccgc acggcgagct
     6181 gccccgacat ccggacggcg ggcattattc gccgaaggct tatcgggaaa taaggctgga
     6241 acaggacggt atcgcgccgg atatgttgtc ggcggaagag ctggcgacga tgtttatgcc
     6301 gcaggaagtg cgaaaggtac agcgcggttg gctggatttg ttcagcaact cttatttctc
     6361 aaccgagctg gcggagtatc acaaagacga ggtacgggtc agctacgatt tgagcgatgc
     6421 gtcggcggtc aatgtgtttg atatggacgg caagtttatt actaaggcgc aggccaacgg
     6481 caatacccgc gaggctttcc cgacagcgcg tatcgaccaa ctggcggaaa aacgccgaaa
     6541 aggcaaaatc aagcgggcgg aaaatgcaat caagctcgcg aatgcggaag tcaatccggc
     6601 actggaacag gcggcagctt gggacgagct gggacatttg ggcggaaacg tcatcgaggc
     6661 ggagtatgcg gtattgccga aaacgggcac ggacgacggg attttcttgt ttgaggcgga
     6721 tatgtaaagg aaaacatgat ggaaaaacag aaaaatgcgg cgttttcggc cgagcttgtt
     6781 gaaaaattga aactcaagcg agcccttggg cggattcaac gatttcaagc aaagattcaa
     6841 ggtgttcccg ctgaacggaa tcaggctcaa acgtttttgc ctgcgcttga aggaaactgc
     6901 gaacctgctc aatcgaagtc ggctcttgac gggtaatccg ctggagcagc caggcaagta
     6961 cgaaggaatc ggtaagcgac ctttcttcca agtcttgaac ggcgacttcc agcatgatca
     7021 ggcgtttttc caaatcggga aactctttca tttcagacgg cctttaaagg ttgtttaaaa
     7081 ctcaaggata ttaaaaatga aacaaattaa tcaagcatta caacaaaaac tggttgaatt
     7141 taaagaaaaa tcgggtatga accaaaccca actggcacgc ggtatcgata cttcgccggc
     7201 atccatcagt atgtatctga acggcactta tgcggaaaaa ggcggcaatt atgaaaccat
     7261 cgagacgaaa atcgaggcgt ttttggagat gcagaaaagt aaggcgcgac gcgaagaact
     7321 ggtgttgggt tttgtagcga ctaagacgac ccgccgaatc gcggaagtga tgcgcaatgc
     7381 gcacgaaggc ggcgaaacag tggtgatcta cggtcaggcg ggattgggaa agactcaggc
     7441 ggtcaaaaac tactgcgaga aaaacccagc ggccatcttg attgaggcta atccgagctt
     7501 tacggctttg gtcttgatgc gcaagttggc gacggcggcg aaggtatcgg cgatgggcag
     7561 cctgaatgat ttgtttgagt ctgtatctga ccgcctgcgc gattcgggcc gtctgattgt
     7621 ggtcgatgaa gcggaaaacc tgcccttgcg cgcccttgag attatccgcc gactgcatga
     7681 tgaaacgggc tgcggcttgg tgttgagcgg tatgccccga ctggtggcca acctgcgcgg
     7741 taagcatggc gagctggtgc aactttatag ccgcgtgtct gttgcgctga atttgggcga
     7801 atctttgccg gatgacgagc tctttgagat tgcgaaagcg gctttgcctg atgcggtcaa
     7861 gcatctgctc cctgatagtg tacaagcgtt gattacggtc atcgggttta atgaaacgct
     7921 ggagctggtg cgcctgatgg gcggtacgac ttatcctttg cggcagggtt atacgaaaaa
     7981 cagtcaatcc cgtgttgcat acttggaaga gattatcggc agtgaggcgg ccggtcggct
     8041 ggtggaggca atggctccgt gcaatctgtt tataccccgt tgcgagacgg ccttgtatga
     8101 gttgcgaaac cgtaaaatcc gcagtcagtt tgaccggcag acggcaggcg gtacccctgc
     8161 ttatgaggcc gttaacgatt tggccttggc acaccgccta agcgaccgcc atgtgtggcg
     8221 aattttaaag caggcggata aggaagcgga gcaggagaat ttgttttaga atggaatgcc
     8281 atgcagatgt atggcatttt attttggaga aaaatatgaa aaagttttat tttgtgctgc
     8341 tggcgttggg tttggcagcg tgtgggcaag aacaatcgca gaaagctgat gcggagcagt
     8401 atttttttgc caataaatat caatttgcag atgagaaaca ggctttttat tttgaacgcg
     8461 ccgcccgttt ccgtgtattg caacaaggcc ttggcgggga ttttgagagg tttttaaaag
     8521 gagaaatacc taatcaagaa aatcttgcaa agtatcgtga aaatattact caagcagtcg
     8581 cttattatgc ggacacgaat ggagatgatg acccataccg cgtctgcaaa caggctgcgc
     8641 aagatgcaga aatcctgatg aagagtatgg taacaagcgg tggaggcggt acaactgatt
     8701 tagataagga aagttatcaa aattaccgaa aatcaatgca agaatgccgt aaaacaataa
     8761 cggaagctga agccaatttg ccgaaaaaat aaaataaacg attctaaggc cgtctgaaca
     8821 acaggcggct tttttgttgc ctactgacac tgtttcgccc gctgcaaaag ccatgccgtt
     8881 tgaaaatgta agcctctgaa agtgcatttt aatctgattt tgagggaggc tttaatgagc
     8941 aaaattattt gtctgactgc cggacacagt aacaccgacc cgggcgcagt caacggcagc
     9001 gaccgtgagg cggacttggc gcaggatatg cgcaacattg tggcttcaat cctgcgtaac
     9061 gattacggcc tgaccgtacg caccgacggc gaaggcaaag gcaatatgcc cttgcgcgat
     9121 gcggtcaagc tgattcgcgg ctcggatgtg gcgattgagt tccacaccaa tgcggcggcg
     9181 aacaaaacgg cgacaggcat cgaagccttg tccacgccga aaaataaacg ctggtgtcag
     9241 gtgctgggca aagccgttgc caagaaaacc ggctggaaac tgcgcggcga agacggcttt
     9301 aagccggata acgcagggca acattcgcgc ctggcttatg cgcaggcagg cggcattgtg
     9361 tttgagccgt tttttatcag taacgacact gatttggcct tgtttaagac gaccaaatgg
     9421 ggcatctgcc gcgcgattgc ggacgcgatc gcgatggaat tgggagcgac gaaggtatga
     9481 aaaagtcttt gattgcttta tgtgttgccc attgtgcaaa gttgaaaaac gattttggcg
     9541 taccaccgtt acctgaaatc aaaatcacgc caagccctgt tcgggtaggc tctttgaaac
     9601 aacatccgag cctgcgcttg ggtaaatcag gcgtggcagc cgcgaaacg
//
LOCUS       DAXHNP010000074         9480 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.074, whole genome shotgun sequence.
ACCESSION   DAXHNP010000074 DAXHNP010000000
VERSION     DAXHNP010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9480
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.074"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            44..354
                     /locus_tag="ACFM5C_001265"
                     /pseudo
     CDS             44..354
                     /locus_tag="ACFM5C_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684347.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(411..1469)
                     /gene="trpD"
                     /locus_tag="ACFM5C_001266"
     CDS             complement(411..1469)
                     /gene="trpD"
                     /locus_tag="ACFM5C_001266"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFC6068961.1"
                     /translation="MITPQQAIERLISNNELFYDEMTDLMRQIMSGKVPPEQIAAILT
                     GLRIKVETVSEITAAAAVMREFAAKVPLEDAEGLVDIVGTGGDGAKTFNISTTSMFVA
                     AAAGAKVAKHGGRSVSSSSGAADVVEQMGANLNLTPEQVAQSIRQTGIGFMFAPNHHS
                     AMRHVAPVRRSLGFRSIFNILGPLTNPAGAPNQLLGVFHTDLCGILSRVLQQLGSKHV
                     LVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRRNLDEIKVANTQESL
                     LKMNEVLEGREGAARDIVLLNTAAALYAGNVAASLSDGISAAREAIDSGRAKSKKEEF
                     VGFQPQQRCHFLGKMELG"
     gene            complement(1533..2123)
                     /locus_tag="ACFM5C_001267"
     CDS             complement(1533..2123)
                     /locus_tag="ACFM5C_001267"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFC6068962.1"
                     /translation="MLLFIDNYDSFTYNIVQYFAELGQEVAVRRNDDITLEEIEALNP
                     QYLVIGPGPCSPKEAGISVAAMRHFAGRLPIMGVCLGHQTIGEAFGGRIVRAKTLMHG
                     KVSPVSHSGKGMFKGLPNPVTCTRYHSLVIERGTLPECLEITAWTEDGEIMGVRHKEY
                     AVEGVQFHPEALLTEHGHDMLNNFLIEFQNFKPQKI"
     gene            2544..4820
                     /gene="znuD"
                     /locus_tag="ACFM5C_001268"
                     /gene_synonym="tdfJ"
     CDS             2544..4820
                     /gene="znuD"
                     /locus_tag="ACFM5C_001268"
                     /gene_synonym="tdfJ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_118820519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc receptor ZnuD"
                     /protein_id="HFC6068963.1"
                     /translation="MAQITLKPIVLSILLISTPLLVLAHETEQSVDLETVSVVGKSRP
                     RATSGLLHASTSSDKIISGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTG
                     RRIKVLNHHGETGDMADFSPDHAIMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVTD
                     GKIPEKMPENGVSGEAGLRLSSGNLEKLTSAGINIGLGNNFVLHTEGLYRKSGDYAVP
                     RYRNLKRLPDSHADSQTGSIGLSWVGEKGFIGVVYSDRRDQYGLPAHSHEYDDCHADI
                     IWQKSLINKRYLQLYPHLLTEEDIDYDNPGLSCGSHDGDGAHAHTHSGRPWIDLRNKR
                     YELRAEWKQPLPGFEALRVHLNRNDYHHDEKAGDAVENFFNNKTHNARIELRHQPIGR
                     LKGSWGVQYLGQKSSALSAIPETVQQPMLIDNNVRHYSFFGVEQANWDNFTLEGGVRV
                     EKQKASIRYDKALIDRENYYNQPLPDLGAHRQTARSFALSGNWYFTPHHKLSLTASHQ
                     ERLPSTQELYAHGKHVATNTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNHF
                     GNYIYAQTLNDGRGPKSIEDDSEMKLVRYNQSGADFYGAEGEIYFKPTPRYRIGVSGD
                     YVRGRLKNLPSLPGREDAYGNRPFIAQDDQNAPRVPAARLGFHLKASLTDRIDANLDY
                     YRVFAQNKLARYETRTPGHHMLNLGANYRRNTRYGEWNWYIKTDNLLNQSVYAHSSFL
                     SDTPQMGRSFTGGVNVKF"
     gene            complement(5481..6278)
                     /locus_tag="ACFM5C_001269"
     CDS             complement(5481..6278)
                     /locus_tag="ACFM5C_001269"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFC6068964.1"
                     /translation="MNRLYPHPIIAREGWPIIGGGLALSLLVSMCCGWWSLPFWVFTV
                     FALQFFRDPAREIPQNPEAVLSPVDGRIVVVERARDPYRDVDALKISIFMNVFNVHSQ
                     KSPADCTVTEVVYNKGKFVNADLDKASTENERNAVLATTASGREITFVQVAGLVARRI
                     LCYTQAGAKLSRGERYGFIRFGSRVDMYLPVDAQAQVAIGDKVTGVSTVLARLPLAAP
                     QIESEPESEPALQTAPVETAATPSAEQRQIEAAAAKIQAAVQDVLKD"
     gene            6433..9279
                     /gene="uvrA"
                     /locus_tag="ACFM5C_001270"
     CDS             6433..9279
                     /gene="uvrA"
                     /locus_tag="ACFM5C_001270"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFC6068965.1"
                     /translation="MCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVITGLS
                     GSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTS
                     HNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHNLPLSSQTVSQMVDAVLKLPEDTRVM
                     ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRV
                     KVKADIKQRLAESFETALRHGNERALAIEMDSGEEHWFSARFACPVCSYSLPELEPRL
                     FSFNNPMGSCPTCDGLGNTNFFDSEKVVAHPELSLASGAIDGWDKRNQFYFQMIQSLA
                     RHYGFDVQAAWETLPAKIKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLER
                     RYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHR
                     FFETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLAS
                     QIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAIREADFV
                     VDMGPGAGEHGGNVLIADTPENVAKCENSVTGQYLSGKKSIAVPSERTPVNPDRMLIL
                     KGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYD
                     DIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPLSRERGYNVGRFS
                     FNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLD
                     MTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRD
                     TGRTLYILDEPTTGLHFADIALLLEVIDRLKGKGNSIVIIEHNLDVIKTADWIVDLGP
                     EGGDGGGRIIASGSPEEVAKVKGSYTGKYLKNIL"
BASE COUNT         2415 a         2738 c         2212 g         2115 t
ORIGIN      
        1 cgttaatttt tgttaatcgt cccttcttag ggacgcaata tataaggttt ataccgtcgt
       61 tgttcctaat gcgcaatcag cgacattgtt gccaattatc cgaaagaaag ttaagcctga
      121 tggcattgta tacacggata cctttcgtag ttatgatgtg cttgatatta gtgaatttag
      181 ccatttacgt aagtttaacg gcattcccaa agagcatttg gggctgcatt taaagaaatg
      241 ccaatggcat tttaaataga atctcaaatt cagattttaa gacaattagt taatgggaat
      301 ttggtctggt tatctagtac agccccaagt ttttatataa aaacagtttg gtaagttctc
      361 ttcgtgaagt gcttatgttt tgccacaaaa gttccataat catggcggca tcacccaagc
      421 tccatctttc caagaaaatg gcatctttgt tgtggttgaa aaccgacaaa ctcctctttt
      481 ttcgatttgg ccctgcctga atcgatggct tcccgtgcgg cagatatgcc gtctgaaagc
      541 gaagcagcga catttccggc atacagggcg gcggcggtgt tgagcaatac gatatcgcgc
      601 gcagcccctt ctcttccttc cagcacctca ttcattttca acaaagattc ctgagtattg
      661 gcaactttga tttcatccaa attgcggcgg gtttcgatac cgaaatcttc tgggcggatg
      721 tcgtattcgc tgatttttcc gtctttgagc tcggcaacgc gtgttttgcc cgtcagtgta
      781 atttcatcca aaccgccctc cccgcaaaca accaaaacat gcttggagcc gagctgttgc
      841 aatactctgg aaaggatgcc gcacaaatcg gtgtggaaca cgcccaaaag ctggttcggc
      901 gcgcccgcag gattcgttaa cggacccaat atgttgaaaa tacttcggaa accgagcgaa
      961 cgtcgtaccg gggcgacatg gcgcatggca ctgtggtgat tgggggcgaa cataaaccct
     1021 ataccggtct gcctgatact ttgggcaacc tgttcgggag tcaggttgag gtttgccccc
     1081 atctgctcca ccacgtccgc cgcgccgctg gaggaagaga ccgaccggcc tccgtgtttg
     1141 gcaaccttcg cgcctgccgc tgcggcaaca aacatcgaag tcgtcgaaat attgaaggtt
     1201 ttcgcgccat ccccgcccgt accgacgata tcgaccagcc cttccgcatc ctccagcggc
     1261 acttttgccg caaactcgcg catcacggcg gcggcagcgg taatctcgga aacggtttca
     1321 accttgatac gcaagccggt caaaatcgcc gcaatttgtt cgggcggcac ttttccgctc
     1381 ataatctgac gcatcaagtc ggtcatttca tcgtaaaaca actcgttatt gctgattaat
     1441 cgttcgatgg cctgttgcgg tgtaatcatt ttttgtcctc cgttcaatat tcggacgaaa
     1501 atgccgtctg aagggcttca gacggcatca cgtcagattt tttgcggttt gaagttttga
     1561 aattcgatta aaaaattgtt taacatatca tgtccgtgtt cggtcaagag ggcttcaggg
     1621 tggaattgta ccccctcaac ggcatattcc ttatggcgca cgcccataat ctcgccgtct
     1681 tccgtccatg ccgtgatttc caaacattcg ggcagcgtgc cgcgttcgat aacgaggctg
     1741 tgataacgcg tacaggtaac cggattgggc aaacccttaa acatcccctt gcccgaatgg
     1801 gacacgggcg acaccttacc gtgcatcagc gttttggcgc ggactatcct gccgccgaac
     1861 gcctcgccta tcgtctgatg cccgaggcac acacccataa tcggcagcct gccggcgaaa
     1921 tggcgcatcg ccgccacgga aatccccgct tctttgggcg aacacggacc gggtccgata
     1981 acgagatatt gcggattcaa tgcctcgatt tcctccaacg taatatcatc gttgcggcgc
     2041 acggcaactt cctgccccaa ttctgcgaaa tactggacga tgttgtaagt aaaactgtcg
     2101 taattgtcga taaacaaaag cattttgtga ttaacctatt gatttataat ttatttatta
     2161 ttaactgcat tttcgatacc cccattcata ccccttatat cttagcgtgc ccgatgcgcc
     2221 ctcgtgaatc tggcgcagag cctcgcgttc tgacgagtac gccattttgc caccttttcg
     2281 agcgttcggg aacgtgccgt ttttatgcac tcataaattt tggttatccc gcagccgaac
     2341 ataatggaca aacacaacgg aatccgcatc aacatcaacc gcgcccccga atgacggagg
     2401 atacaaatgg acaccgcctg atgccgcaac cgtgtcattt gaaaaacttt tgcctatgcc
     2461 ctctgagtgt tctcaaaatc ttatgatata aaaaatgcaa tgttatataa taacaaactt
     2521 ttaaaatgcg aagagaagcc aaaatggcac aaattacact caaacccatt gttttatcaa
     2581 ttcttttaat cagcacaccc ctcctcgtcc tagcgcatga aaccgagcag tcggtggact
     2641 tggaaacggt cagcgtcgtc ggcaaaagcc gtccgcgtgc cacttcgggg ctgctgcacg
     2701 cttcgacctc ctccgacaaa atcatctccg gcgatacctt gcgccaaaaa gccgtcaact
     2761 tgggcgatgc tttggacggc gtaccgggca ttcatgcctc gcaatacggc ggcggcgcgt
     2821 ctgctcctgt cattcgcggt caaacgggca ggcggattaa agtgttgaac catcacggcg
     2881 aaacaggcga tatggcggat ttttcgcccg atcacgccat tatggtagat accgccttgt
     2941 cgcaacaggt cgaaatcctg cgcgggccgg ttacgctctt gtacagctcg ggcaatgtgg
     3001 ccggtttggt cgatgttacc gatggaaaaa tccccgaaaa aatgcctgaa aacggcgtat
     3061 cgggcgaagc cggattacgt ttgagcagcg gcaatttgga aaaactgaca tccgcaggca
     3121 tcaatatcgg tttgggcaac aacttcgtgc tacataccga aggcttgtac cgcaaatcag
     3181 gcgactacgc cgtaccgcgt taccgcaatc tgaaacggct gcccgacagc cacgccgatt
     3241 cgcaaacagg cagcatcggg ctgtcttggg ttggcgaaaa aggctttatc ggcgtggtgt
     3301 acagcgaccg cagagaccaa tacggcctgc ctgcccacag ccacgaatac gatgattgcc
     3361 acgccgacat catttggcaa aagagtttga ttaacaaacg ctatttgcag ctttatccgc
     3421 acttgttgac cgaagaagac atcgattacg acaatccggg tttgagctgc ggttctcacg
     3481 acggtgacgg tgcacacgca cacacccaca gcggcagacc gtggatagac ctgcgcaaca
     3541 aacgctacga actccgtgcc gaatggaagc agccgctccc cggttttgaa gccctgcgcg
     3601 tacacctgaa ccgcaacgac taccaccacg acgaaaaagc aggcgatgca gtagaaaact
     3661 tcttcaacaa caaaacacac aacgcccgta tcgagttgcg ccaccaaccc ataggccgtc
     3721 tgaaaggcag ctggggcgtg caatatttgg gacaaaaatc cagcgcactt tccgccattc
     3781 ccgaaaccgt ccaacaaccg atgttgattg acaacaatgt gcgccattac agctttttcg
     3841 gtgtagaaca ggcaaactgg gacaacttca cgcttgaagg cggcgtacgc gtggaaaaac
     3901 aaaaagcctc catccgatac gacaaagcat tgattgatcg ggaaaactac tacaaccagc
     3961 ccctacccga tctcggcgcg caccgccaaa ccgcccgctc attcgcactt tcgggcaact
     4021 ggtatttcac gccgcaccac aaactcagcc tgaccgcctc ccatcaggaa cgcctaccgt
     4081 caacgcaaga gctgtacgca cacggcaaac acgtcgccac caacactttt gaagtcggca
     4141 acaaacacct caacaaagag cgttccaaca acatcgaact cgcgctgggc tacgaaggcg
     4201 accgctggca atacaatctg gcactctacc gcaaccattt cggcaactac atttacgccc
     4261 aaaccttaaa cgacggacgc ggccccaaat ccatcgaaga cgacagcgaa atgaagctcg
     4321 tacgctacaa ccaatccggt gcggacttct acggcgcaga aggcgaaatc tacttcaaac
     4381 cgacaccgcg ctaccgcatc ggcgtttccg gcgactatgt acgaggccgt ctgaaaaacc
     4441 tgccttccct acccggcagg gaagatgcct acggcaaccg tcctttcatc gcacaggacg
     4501 accaaaatgc cccccgtgtt ccggctgcgc gcctcggctt ccacctgaaa gcctcgctga
     4561 ccgaccgtat cgatgccaat ttggactact accgcgtgtt cgcccaaaac aaactcgccc
     4621 gctacgaaac gcgcacgccc ggacaccata tgctcaacct cggcgcaaac taccgccgca
     4681 atacgcgcta tggcgagtgg aattggtaca tcaaaaccga caacctgctc aaccaatccg
     4741 tttacgccca cagcagcttc ctctctgata cgccgcaaat gggtcgcagc tttaccggcg
     4801 gcgtgaacgt gaagttttaa aactagatag gcaaacaaaa aaggttttca gacggcattc
     4861 tgaaaacctt ttttcttttt aatcaatttg ttaggaaata tgacaaagac aaagaacaaa
     4921 ccactatgcc atcattccca tttttttgtt tcatcattct tgctttcacg ccgtcattct
     4981 cgcaaaagca gaaacccatc attcccgcgc aggcgggaat ccaattcatt cggtttcagc
     5041 cgtttccgat aaatcgcctt agcatttggg ttctagattc ccactttcgt gggaatgacg
     5101 gcgtaaaggt ttctgttttt taagtgttag gtaactaata agtcgtcatt cccgcgcagg
     5161 cgggaatcca attcgttcgg tttcagccgt ttccgataaa tcgccttagc atttgggttc
     5221 tagattccca ctttcgtggg aatgaggcgg aaaggtttct gttttttaag ttttaggtaa
     5281 ctaataagtc gtcattcccg cgcaggcggg aatacaattc gttcggtttc tgttatttct
     5341 gataaatcac cgtaacgtta agttcccaga tttccacttt cgtgaacata acggtgtgaa
     5401 cattagcaaa aattcaaaaa accaaacttc ctcattcgtg tgaatgatgg tactgatatt
     5461 ttctatttca gttcgcaaaa ttaatctttc aacacatctt gcacagccgc ctgaatctta
     5521 gccgccgctg cctcgatttg ccgttgttcg gcagatgggg ttgccgctgt ttcaaccgga
     5581 gcagtttgta aagcaggctc agattcaggc tcggattcga tttgcggcgc agccagcggc
     5641 aaacgcgcca atacagtgct gacgccggtt actttatcgc caatcgccac ttgcgcctgc
     5701 gcatcgacag gcagatacat atccacgcgc gaaccgaagc gaataaagcc atagcgttcg
     5761 ccgcgggaca gtttcgcacc tgcttgggtg tagcacaaaa tacggcgcgc caccaaaccg
     5821 gccacttgaa caaaagtaat ttcacgacca gaagccgtcg tcgccaaaac cgcgttgcgt
     5881 tcgttttccg tgctggcttt gtccaaatcc gcatttacga atttgccttt gttatagacc
     5941 acttccgtta ccgtacaatc ggcaggcgat ttttgcgaat gcacgttgaa cacgttcata
     6001 aaaatactga ttttcaaagc atcgacatca cgatacggat cgcgtgcgcg ctcgaccacc
     6061 acaatgcggc cgtcaacagg gctcaacacc gcttcaggat tttgcggaat ctcacgcgca
     6121 gggtcgcgga aaaactgcaa tgcaaatacg gtaaacaccc aaaacggcaa agaccaccag
     6181 ccgcagcaca tcgacaccag caggctcaaa gccaaaccgc cgccgataat cggccagccc
     6241 tcacgggcga taatcgggtg ggggtaaaga cggttcattt gtcatccttc tattcaagcg
     6301 ggttaaaatt gccgccatta taacggaatc cgccgcattc cgccgacaaa tgccgtctga
     6361 acgcggcttc agacagcatc cgagaaagtg ctacaatatc ggttttcctt tatttttcag
     6421 gcggcatcca ttatgtgcaa ccatcatccc cgacattcgc acgacaacga caccatccgc
     6481 atacgcggcg cacgcacgca taatttgaaa aacatcgatt tggacattcc gcgccacaag
     6541 ctcgtggtca taacaggatt gtcaggcagc ggcaaatcat cgctggcatt tgacacgctg
     6601 tatgccgaag ggcagcggcg ttatgtcgag agcctttccg cctatgcccg tcaattttta
     6661 cagatgatgg acaaacccga tgtcgatttg atcgaaggcc tctcgcccgc gatttccatc
     6721 gagcaaaaat ccaccagcca caatccgcgt tccaccgtcg gcacggtaac tgaaatccac
     6781 gattacctgc gccttttgta cgcccgcgtc ggcacgccgt attgccccga acacaatctg
     6841 ccgctatcca gccagaccgt gtcgcagatg gttgatgccg tgttgaagct gccggaagac
     6901 acgcgcgtga tgattctggc gccggcggta cgcgagcgta aaggtgagtt tgtcgatttc
     6961 tttgccgact tgcaggcgca gggctttgca cgggtgcgag tggacggcga ggtctatcag
     7021 cttgacgaag tgccgaagct ggaaaaaaac atcaagcaca atatcgatgt cgtcatcgac
     7081 cgcgtgaaag taaaagctga catcaagcaa cggctggcag aaagttttga aaccgctctg
     7141 cgccacggca acgaacgcgc actggcgata gagatggaca gcggcgaaga gcattggttt
     7201 tccgcgcgtt tcgcctgccc cgtatgttcg tacagcctgc ccgaattgga gccgcgcctc
     7261 ttttcgttca acaacccgat gggctcctgc ccgacttgcg acggcttggg taacaccaat
     7321 ttcttcgact ccgaaaaagt ggtcgcgcat cccgaattgt cgctggcttc gggcgcgatt
     7381 gacggctggg acaagcgcaa ccagttctat ttccaaatga ttcagtcgct ggcgcggcat
     7441 tacggtttcg acgtgcaggc tgcttgggaa accctacctg caaaaatcaa aaaagtcgtg
     7501 ttgcacggct cgggcaaaga agtcattgat ttcacttacc tgtccgaacg cggcaccacc
     7561 ttcaaccgca gccacgcctt cgaaggcatc atccccaatc tcgaacgccg ctaccgcgaa
     7621 accgacagcg aaaccgtgcg cgaaaaactg cgcgaatacc aaaaccaccg cgcttgcccg
     7681 agctgcggcg gcgcacgttt gcgcaaagaa gcccgctacg tttacgtcgg cggcgagccg
     7741 ttgcacgaag tttccgcctg gccgctgacc aaaacccacc gattctttga aacgctggat
     7801 ttggacggca acaaaaaaca aatcgccgaa aaaatcctca aagaaatcac cgaacgtctc
     7861 ggctttttga ttaatgtcgg gctggattac ctgaatctct cccgttccgc cgaaaccctt
     7921 tccggcggcg aagcccagcg catccgcctc gccagccaaa tcggcagcgg cctgaccggc
     7981 gtgatgtacg ttttggacga accctccatc ggcctgcacc agcgcgacaa cgaccgcctg
     8041 cttgccaccc tcaaacgcct gcgcgatttg ggcaacagcg tcatcgtggt cgaacacgac
     8101 gaagacgcca tccgcgaagc cgatttcgtc gtcgatatgg gcccgggcgc aggcgaacac
     8161 ggcggcaacg tattgattgc cgacacgccc gaaaacgtcg ccaaatgcga aaactccgtt
     8221 accggacaat acctcagcgg caaaaaatcc attgccgtgc cgtctgaacg cacgccagtc
     8281 aatcccgacc gaatgctcat cctcaaaggc gcgcgcggca acaacctcaa aaacgttacc
     8341 cttgagctgc cgctcggttt gattacctgc atcaccggcg tatccggcag cggcaaatcc
     8401 accctgatta acgacaccct cgccaaaatc accgcccgcg aactcaaccg cgcccaagaa
     8461 gaacccgccc catacgacga catccgcggc ctcgaacacc tcgacaaagt catcaacgtc
     8521 gaccaatccc ccatcggccg caccccgcgc tccaaccccg ccacctacac cggcctgttc
     8581 acccccatcc gcgaactctt cgccggtgta cccctctcgc gcgaacgcgg ctacaacgtc
     8641 ggcagattct ccttcaacgt caaaggcggc cgctgcgaag cctgccaagg cgacggcgtc
     8701 atcaaagtcg aaatgcactt cctgcccgac gtgtacgtcc cctgcgaagt ctgccacggc
     8761 aaacgctaca accgcgaaac gctcgaaatc caatacaaag gcaaaaacat cagccaagtc
     8821 ctcgacatga ccgtcgaaga agcccgtgaa tttttcgacg ccgtccccac cgtatcgcgc
     8881 aaactgcaaa ccttgatgga cgtaggctta ggctacatcc gtctcggcca atccgccacc
     8941 accctctccg gcggcgaagc ccagcgcgtc aaactcgcct tggaactctc caaacgcgac
     9001 accggcagaa cgctctacat cctcgacgaa cccaccaccg gcctacactt cgccgacatc
     9061 gccctgctgc tggaagtcat agaccgtctg aaaggcaaag gcaactcgat agtgattatc
     9121 gagcataatc tggatgtgat taaaaccgcc gattggattg tggacttagg gccagaaggc
     9181 ggcgacggcg gagggaggat tattgcttca ggtagcccgg aggaagtggc gaaggttaag
     9241 gggagttata ctgggaagta tttgaagaat atactttaaa aaacgggatg gtttaaacca
     9301 tcccgttttt ttattccttc tgttttcgat tttgtttggc tttgaagcta tcaaaaataa
     9361 tgctaaatcc caaacaggtg aacattaaag gcatccccca tttcatatcc gaagaaataa
     9421 cattaaacat ttctaataat gtaagaatgc ctgataaagc tataaaaata cctaaaaaca
//
LOCUS       DAXHNP010000075         9463 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.075, whole genome shotgun sequence.
ACCESSION   DAXHNP010000075 DAXHNP010000000
VERSION     DAXHNP010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9463
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.075"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            277..1095
                     /gene="opc"
                     /locus_tag="ACFM5C_001271"
                     /gene_synonym="opcA"
     CDS             277..1095
                     /gene="opc"
                     /locus_tag="ACFM5C_001271"
                     /gene_synonym="opcA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Opc"
                     /protein_id="HFC6068966.1"
                     /translation="MKKTVFTYAMIALTGTAAAAQELQTANEFTVHTDLSSISSTRAF
                     LKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSKKNIINLETDENKLGKTKNVKLPT
                     GVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKV
                     HADLLSQLGNGWYINPWSEVKFDLNSRYKLNTGVTNLKKDINQKTNGWGFGLGANIGK
                     KLGESASIEAGPFYKQRTYKESGEFSVTTTSGDVSLTIPKTSIREYGLRVGIKF"
     gene            1259..1903
                     /locus_tag="ACFM5C_001272"
     CDS             1259..1903
                     /locus_tag="ACFM5C_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6068967.1"
                     /translation="MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVT
                     PLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDS
                     KIFRREYLDKTRRFYEKHGGKTIIIARFVPIVRTFAPFVAGMGKMHYAKFIRYNIIGG
                     FLWVILFSYAGYFFANFPIVKNNLGLVMGGIIIISILPGAVEIARAKLAVKSKR"
     gene            1922..3832
                     /locus_tag="ACFM5C_001273"
     CDS             1922..3832
                     /locus_tag="ACFM5C_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6068968.1"
                     /translation="MNILSVENASFAVGHVALLDKTSFQLDSGEKIGLIGRNGAGKSS
                     FLKILAGLQKLDDGQIIVQNNLKIVYVPQESFFDKDATVFDTVAEGLGKIRDLLRRYH
                     RVGHELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGG
                     QKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDN
                     IATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEA
                     RRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHTSFAYGGKVI
                     MDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRS
                     ALNENETVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLL
                     LAKLFTRPANILVLDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSL
                     VFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKE
                     QRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERW
                     ELLETKQNGNAV"
     gene            3853..4218
                     /locus_tag="ACFM5C_001274"
     CDS             3853..4218
                     /locus_tag="ACFM5C_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068969.1"
                     /translation="MFKRPEEIIVLILAVLWIAGTYFLAALFGADAYTVLKITALTLL
                     WSAASFLLWQKNLSRHIWPLLLGCLTACWWPYLNQSVAPGSLPWYASWTFKTILALIP
                     VTAGYLFKWKQYRQRKTKP"
     gene            4329..5804
                     /gene="trpE"
                     /locus_tag="ACFM5C_001275"
     CDS             4329..5804
                     /gene="trpE"
                     /locus_tag="ACFM5C_001275"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HFC6068970.1"
                     /translation="MISKQEYQAQAAQGYNRIPLVQELLADLDTPLSLYLKLANRPYT
                     YLLESVVGGERFGRYSFIGLPCSHYLKASGKHVDVYQNGEIVEQHDGNPLPFIEAFHN
                     RFKTPEIPSLPRFTGGLVGYFGYETIYNFEHFAHRLKNTTKADPLGTPDILLMLSQEL
                     AVIDNLSGKIHLVVYADPSQPDGYERARERLEDIRTQLRQSCAIPLSLGSKHTEAVSE
                     FGEEPFKACVNKIKDYIFAGDCMQVVPSQRMSMEFTDSPLALYRALRTLNPSPYLFYY
                     DFGDFHIVGSSPEILVRRERNDVIVRPIAGTRLRGKTPAEDLANEQDLLSDAKEIAEH
                     VMLIDLGRNDVGRISKTGEVKVTDKMVIEKYSHVMHIVSNVEGRLKDGMTNMDILAAT
                     FPAGTLSGAPKVRAMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNTL
                     YVQSGAGVVADSDPASEWQETQNKARAVIHAAQMVQEGLDK"
     gene            5801..6347
                     /locus_tag="ACFM5C_001276"
                     /pseudo
     CDS             5801..6347
                     /locus_tag="ACFM5C_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242626.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
     gene            6344..7480
                     /locus_tag="ACFM5C_001277"
     CDS             6344..7480
                     /locus_tag="ACFM5C_001277"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HFC6068971.1"
                     /translation="MKNISLSPPATLGILGGGQLGRMFTVAAKTMGYKVTVLDPDPNA
                     PAAEFADRHLCAPFNDQTALDELAKCAAVTTEFENVNADAMRFLAKHTNVSPSGDCVA
                     IAQNRIQEKAWIRKAGLQTAPYQAVCKAEDITEASAQFLPGILKTATLGYDGKGQIRV
                     KTVDELKAAFAEHGGVDCVLEKMVDLRGEISVIVCRLNNDNVQTFDPAENIHENGILA
                     YSIVPARLSADIQQQARQMAQRLADELNYVGVLAVEMFVVGDTHELVVNEIAPRPHNS
                     GHHTVDACAADQFQQQVRLMCNLPPADTKLLSSCCMANILGDVWQEDGGEPDWFPLQS
                     RPDAHLHLYGKKTAHKGRKMGHFTVLTTDSDTAFQEAKKLHQSL"
     gene            7527..8009
                     /locus_tag="ACFM5C_001278"
     CDS             7527..8009
                     /locus_tag="ACFM5C_001278"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6068972.1"
                     /translation="MNLLTLLRPATVQDCKDIFKVHLHSVQYTCILSYNEHALKVWEG
                     LLNTESYLPTISDPDKALWVAEYKGNIQGFFQIDCQEAQLDALYVHPLFHNLGLGTAL
                     LHQAETIAHKSGLSFLKLYASLNSVPFYLLNRYESLGSAVLQLDPSIKIKCELMRKHL
                     "
     gene            8115..9170
                     /locus_tag="ACFM5C_001279"
     CDS             8115..9170
                     /locus_tag="ACFM5C_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6068973.1"
                     /translation="MKTYAPALYTAALLTACSPAADSNHPSGQNAPANTESDGKNITL
                     LNASYDVARDFYKEYNPLFIKTYQSEHPGTSVSIQQSHGGSSKQALSVANGLQADVVT
                     MNQSSDIDLLEKKGLVEKGWQQALPDHAAPYTSTMVFLVRKNNPKQIRDWNDLAKDGV
                     NIVIANPKTSGNGRYAFLGAYGYGLKATNGNEQEAQKLVASILKNTPVFENGGRAATT
                     TFTQRNIGDVLITFENEANYVSKKLTQGQFEIVYPSYTISAESPVAVVNSVVAKKGTQ
                     KTARAYLEYLWSEPAQELAASLYLRPRNPEVLARHKADFPDLDTFSPEEKFGGWDNIM
                     KTYFADGGIFDRLTAQK"
     gene            9167..9364
                     /locus_tag="ACFM5C_001280"
     CDS             9167..9364
                     /locus_tag="ACFM5C_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068974.1"
                     /translation="MTAMPSEPPFRRHSTHQNRKTAPKIIITRHNGKPDTKPNTAAKM
                     PSEAVGATILIWGITFLNHPF"
BASE COUNT         2636 a         2684 c         2084 g         2059 t
ORIGIN      
        1 ccgtgttggg ttctagattc ccgcctgagc gggaatgacg gcggcgggtt tctgtttttc
       61 cgataaatac acacaaacta aaatttcgtc attcccataa aaaacagaaa accaagtgag
      121 aataacaatt cgttgtaaac aaataactat ttgttaattt ttattaatat atgtaaaatc
      181 cccccccgaa agcttaagaa tataattgta agcgtaacga ttatttacgt tatgttacca
      241 tatccgacta caattcaaat tttagaggtt ttaactatga aaaaaacagt ttttacatat
      301 gccatgatcg ccctgaccgg tactgccgcc gctgcacaag agcttcaaac cgctaatgag
      361 tttaccgtcc acaccgacct ctcttccatt tcttcaactc gtgctttcct gaaagaaaaa
      421 cacaaagctg ccaaacacat cggcgtgcgt gctgatattc cttttgatgc caaccaaggc
      481 atccgcttgg aagccggttt cgggcgcagc aaaaaaaata ttattaattt ggaaacagat
      541 gagaacaagc tgggtaagac taaaaatgta aaactgccca ccggcgttcc tgaaaaccgt
      601 atcgatcttt acacaggcta cacctacacc caaacgttaa gtgattcttt aaatttccgt
      661 gtgggtgccg gcttgggttt tgaatcttca aaagacagca ttaaaaccac caagcatacg
      721 cttcacagca gccgtcagtc gtggttagcc aaagttcacg cggatttgct ttcccaactg
      781 ggtaacggct ggtatatcaa cccttggtct gaagtgaaat ttgacctcaa ttcccgctat
      841 aaattaaaca ccggcgttac caatctcaaa aaagacatca atcaaaaaac caacggctgg
      901 ggctttggat tgggtgcaaa tattggtaaa aaactgggcg aatccgccag catcgaggcg
      961 gggccgttct acaaacaacg cacttacaaa gaatccggcg agtttagtgt aacaaccacg
     1021 agtggcgacg tatcgctcac catcccgaaa accagtattc gtgaatacgg cttgcgcgtc
     1081 ggcataaaat tctgatgatt tgaaatcatc attgtcgctt taaatgccaa accgcaaact
     1141 attttggttt gcggttttta cgtgaaatga atttgaatag ccgatgccgt ctgaaacttt
     1201 tcagacggca tttttccaat cggttaaaat acgcggtttg tttttttagg aacgcaccgt
     1261 gcttgcctcc gccatcgact tcatcctcca tatcgaccaa cacctgctcg cgctgtcggc
     1321 gcaatacggt gtgtggattt atgcgattct gtttttgatt gttttttgcg aaaccggcct
     1381 gattgttacg cccttactgc ccggcgattc gctgctgttt gccgccggcg ggattgccgc
     1441 gctgggcggt atggatattc atttgatggt tgcattatta agccttgccg ccatactcgg
     1501 cgacgcgctc aattttactg tcggtaagta tttcggcggc aggctgttcg ccaatcccga
     1561 ttctaaaatc ttccgacgcg aatatctcga taaaacccgc cgtttttacg aaaaacacgg
     1621 cggcaaaacg attatcatcg cgcgcttcgt gcccatcgtc cgcaccttcg ccccctttgt
     1681 cgccggcatg ggcaaaatgc attatgcaaa atttatccgc tataacatca tcggcggctt
     1741 cttgtgggtt atcctgtttt cttatgcagg ctatttcttt gccaacttcc ccatcgtaaa
     1801 aaacaatctg ggcttggtga tgggcggcat cattattatt tccatcctgc cgggtgcagt
     1861 tgaaattgcc cgcgccaaac ttgcggtaaa atccaaacgg taactgttga gaatttgtat
     1921 catgaatata ttatccgtag aaaacgcttc ctttgccgtc ggccatgtcg ccctgctcga
     1981 caaaacgtcc ttccaactcg acagcggcga aaaaatcggc ttaatcggac gcaacggtgc
     2041 gggtaagtct tcgtttttaa aaatcctcgc cggtttgcaa aagctcgacg acgggcagat
     2101 tattgttcaa aacaacctca aaatcgttta tgtaccgcag gaatcctttt ttgataagga
     2161 cgcaaccgta tttgataccg ttgccgaagg tttgggtaaa attcgcgatt tattgcgccg
     2221 ttaccaccgc gtcggtcatg agttggaaaa cggttcgggt gaggctttgt tgaaagaact
     2281 caacgaatta caacttgaaa tcgaagcgaa ggacggctgg aagctggatg cggcagtcaa
     2341 gcagactttg ggcgaactcg gtttgccgga aaacgaaaaa atcggcaacc tttccggcgg
     2401 tcagaaaaag cgtgtcgcct tggcgcaggc ttgggtgcag aagcccgacg tattgctgct
     2461 ggacgaaccg accaaccatt tggatattga cgcgattatc tggttggaaa acctgctcaa
     2521 ggcgtttgaa ggcagcttgg tcgtgattac ccacgaccgc cgttttttgg ataatatcgc
     2581 tacgcggatt gttgaacttg accgcggcat tctacgttcc tatcccggct cgttctctaa
     2641 atacagtgag aaaaaagcgc aagagttggc agtcgaggcg gaacataacc gcttgtttga
     2701 caaatttcat gctcaggaag aagcgtggat acgcaaaggc atcgaagcgc gacgtacccg
     2761 taacgaagga cgcgtgcgcc gtttggaaga gctgcgccgc caacgtgcag aacgccgcaa
     2821 cgtgcaggga caggtcaact ttaagctcga tagcggtgag aaaagcggca aaatcatcgc
     2881 cgaattggaa cacacttcgt ttgcctatgg cggcaaagtc attatggaca aattctccgc
     2941 catcttgcag cgtggcgaca aaatcggctt aatcggccca aacggtatcg gcaaaaccac
     3001 cttcctcaag ctgattttgg gcgaattgca gccgacctac ggcagaatcc gtatcggcag
     3061 caagcaggaa gtcgcctatt tcgaccagtt ccgcagcgcg ttgaatgaaa acgaaaccgt
     3121 gttttacacg ctcggacagg gcaatgatta cgttgaagtc ggcggtaaga aaaagcatgt
     3181 gatgagctat ttagaagatt tcctgttccc ccctgcccgc gcgcaaagtc ctgtttcttc
     3241 actctccggc ggcgaacgca accgcctttt gctggcaaaa ctctttaccc gtcccgccaa
     3301 tattttggtc ttggacgaac cgaccaatga cttggacatc gacacccaag agctgctcga
     3361 agacctgttg cgcgattatc aaggcacggt attccttgtc tcgcacgacc gtatgttcct
     3421 cgataacgtg attacccaaa gccttgtttt tgaaggaaat ggaaggttaa aagaatatat
     3481 cggcggctat caggactaca tcgacgcaaa atcacgcgaa gcgaagattc agacggaatc
     3541 cgcacccaaa acagccgatg ccgaaccggt gaaagaaaaa cccaaagcca accgcacggt
     3601 caaactgtcc tacaaagaac agcgagaact cgatgccctg cccgacgaaa tcgccgcctt
     3661 ggaagccgaa caggcagaaa tcaacgcgca gctttccgat cccgaaatct tcaaagatta
     3721 cgaaaaagcc ggcgcactgc aaagccgcgc cgaagaaatc gaaatgctgc ttttggaaaa
     3781 gctggaacgc tgggagctgc tggaaaccaa acagaacggc aatgccgtct gaaatcaaac
     3841 aggaagaaaa aaatgttcaa acgacctgaa gaaatcatcg tcctgatact tgccgtcctc
     3901 tggattgccg gtacgtattt tctcgccgcc ctgtttggag cggacgctta taccgtgtta
     3961 aaaatcactg cccttaccct gctttggtct gccgcatcat tcctcctttg gcaaaaaaac
     4021 ctcagccggc atatctggcc gctgctgctc ggctgcctga ctgcctgttg gtggccgtat
     4081 ctgaatcaat cggtcgcacc cggttcttta ccttggtatg catcatggac gttcaaaacc
     4141 atcttagccc tgattcccgt aaccgcaggt tatctgttta aatggaaaca ataccggcag
     4201 cgcaaaacaa agccgtaagc ccgtcttttt cagacggcat ctccggtcag actgtcaaca
     4261 attccgataa aatgctatac tcgcgcccgt tgccgcgccg tccgaaaccg ccctttggga
     4321 aagcagaaat gatcagcaaa caagaatacc aagcccaagc cgcccaaggc tacaaccgca
     4381 tcccgctcgt gcaagaactc cttgccgatt tggatacgcc gctttccctc tatctcaaac
     4441 tcgccaaccg cccctatacc tacctgctcg aatccgttgt cggtggcgaa cgtttcggcc
     4501 gctattcttt tatcggcctg ccttgcagcc actatctcaa agccagcggc aaacacgtcg
     4561 atgtttatca aaacggcgaa attgtcgagc aacacgacgg caaccccctg ccctttatcg
     4621 aagccttcca caaccgcttc aaaacacccg aaatcccaag cctgccgcgc tttaccggcg
     4681 gactggtcgg ctacttcggt tacgaaacca tctacaattt tgaacacttc gcccaccgcc
     4741 tgaaaaacac caccaaagcc gacccgctcg gcacgcccga catcttgctg atgctgtcgc
     4801 aagaattggc ggtgatcgac aatttgagcg gcaaaatcca tctcgtcgtt tacgccgatc
     4861 cgtcgcagcc cgacggctac gaacgcgccc gcgaacgcct cgaagacatc cgcacccagt
     4921 tgcgccaaag ctgcgccatc ccgctctcgc tcggcagcaa acacaccgaa gccgtcagcg
     4981 aattcggcga agagccgttc aaagcctgcg ttaacaaaat caaagactac atcttcgcag
     5041 gcgactgcat gcaggttgtc cccagccagc gcatgagcat ggaattcacc gacagcccgc
     5101 tcgccctcta ccgcgccctg cgtacgctca acccttcgcc ttatctcttt tactacgatt
     5161 tcggcgattt ccacatcgtc ggctcctcgc ccgaaatcct cgtccgacgc gaacgcaacg
     5221 acgttatcgt ccgccccatc gccggcacgc gcctgcgcgg caaaaccccc gccgaagacc
     5281 ttgccaacga acaagatttg ttaagcgatg ccaaagaaat cgccgaacac gtcatgttga
     5341 ttgacttagg acgcaacgac gtcggccgca tcagtaaaac cggcgaagtc aaagttaccg
     5401 acaaaatggt gattgaaaaa tactcccatg taatgcacat cgtttccaac gtcgaaggcc
     5461 gtctgaaaga cggcatgacc aacatggaca tcctcgccgc taccttccct gccggcacac
     5521 tctccggcgc acccaaagtc cgcgccatgg aaatcatcga agaagtcgaa ccgagcaaac
     5581 gcggcatcta cggcggtgcc gtcggcgtat ggggtttcaa caacgacatg gatttggcaa
     5641 tcgccatccg caccgccgta gtaaaaaaca acacgctata cgtccaaagc ggcgcgggcg
     5701 tggttgccga ctccgatccg gcctccgaat ggcaggaaac acaaaacaaa gcccgagccg
     5761 tcatacacgc cgcgcaaatg gtacaggaag ggttggataa atgacttatg aaaaacttta
     5821 tgagcttcgc caaacactca gaccgactac caaagacggt ctctatacag ataatgaaaa
     5881 aaatcgagaa atcctaacgg ttagatggag cggcaacaca gaaaatccta aaaatttctc
     5941 agctgtcgct ataggaatta atccaagtaa agcaaatgat gaaagaagcg acaaaaccct
     6001 tacccaactt gcacgtttct tggatatgta cggttttacc aacttcaaaa tgttaaatat
     6061 tttttccagt tactctacac agcaaacagg aattaggaca aacacccaaa ccgatttttc
     6121 caaatttaaa ggatgtttgg aagatgctga tatgattatt cttgcatggg gtacagaccg
     6181 cggtgcttat aaggatgaaa aaaaacagaa tactggaatt tctaaaagca gaaaaattta
     6241 tggaaaaagt attctgtatt tctgaaactg gtaattccag cgatacaaga catccgtcaa
     6301 gaattagtta tagctatcaa cttgtacaat ttgaagagtc agcatgaaaa acatatctct
     6361 ttctccgccc gccacgctcg gaatcctcgg cggcggacaa ttaggcagaa tgtttaccgt
     6421 tgccgccaaa accatgggct acaaagtaac cgtactcgac cccgatccga acgctccggc
     6481 ggcggaattt gccgaccgcc atttgtgcgc gccgtttaac gaccagaccg cgttggacga
     6541 gttggcaaaa tgcgcggcgg ttacgaccga atttgaaaac gtcaatgccg acgcgatgcg
     6601 ttttctggca aaacatacca acgtttcccc cagcggcgac tgcgttgcca tcgcgcaaaa
     6661 ccgcattcag gaaaaggcat ggatacgcaa agcaggtctg caaaccgcgc cgtatcaagc
     6721 agtttgcaaa gccgaagaca tcactgaagc aagcgcgcaa ttcctgcccg gtattctgaa
     6781 aacggccact ttgggctacg acggcaaagg tcaaatccgc gtcaaaacgg tggacgaact
     6841 caaagccgcg tttgccgaac acggcggcgt ggattgcgtt ttggaaaaaa tggtggattt
     6901 gcgcggcgaa atttccgtta tcgtatgccg tctgaacaat gacaacgtgc aaactttcga
     6961 tcctgccgaa aacattcacg aaaacggtat cctcgcctac tccatcgtcc cagcccgact
     7021 gagtgccgac attcagcaac aggcgcgaca aatggcgcag cgtttggccg atgaattgaa
     7081 ctacgtcggc gtattggcgg tagaaatgtt tgttgtcggc gacacgcatg aattggtcgt
     7141 caacgaaatc gcgccgcgtc cgcacaattc cggccaccat accgtcgacg cctgcgcggc
     7201 agaccaattc cagcaacagg tccgcctgat gtgcaacctg ccacctgctg acaccaaatt
     7261 gctgagttct tgctgtatgg cgaatatttt gggcgacgtt tggcaggaag acggcggcga
     7321 accggattgg tttcccctgc aaagccggcc ggacgcgcac ctgcaccttt acggcaaaaa
     7381 aaccgcgcac aaagggcgga aaatgggaca ctttaccgtt ttaaccaccg attcggacac
     7441 cgcatttcaa gaagcaaaaa aactgcatca gtccctataa tccgaccaac ggcacagatg
     7501 ccgtctgaag ccgccgacat actgccatga acctgctgac actgttacgc cccgccaccg
     7561 tgcaagactg caaagacatc ttcaaagtcc acctgcactc cgtccaatac acctgcatcc
     7621 tcagctacaa cgaacacgcc ctaaaagtat gggaaggctt gttaaacaca gaaagctacc
     7681 tgccgaccat ttccgatccc gacaaagcac tttgggttgc cgaatacaaa ggcaacatac
     7741 agggattttt ccaaatcgac tgccaagaag cacaactcga tgcactttac gtccaccccc
     7801 tgttccacaa cctcggactg ggcactgccc tgcttcatca ggcggaaacc atcgcccaca
     7861 aatctggttt gagctttctg aaactctacg catcgctcaa ctccgtcccg ttttaccttc
     7921 tcaaccgcta cgaatcgctc ggttcggcag tattgcagct tgaccccagc atcaaaatca
     7981 aatgcgaact gatgcggaaa cacctctgat ccgtccttat aaccaaaact gataatcttc
     8041 aaatcaaaca ttatttccac aagcgcagac agccgtataa agttgcccca tctaccaacc
     8101 gacaggacaa gcatatgaaa acctacgcac cggcactcta taccgcagcc ctgctcaccg
     8161 cctgcagccc cgcagccgat tcaaaccatc cgtccggaca aaatgccccg gccaataccg
     8221 aatccgacgg aaaaaacatt accctgctca acgcctcata cgatgtggca cgggattttt
     8281 acaaagaata caacccctta tttatcaaaa cataccaatc cgaacacccc ggcacatccg
     8341 tcagcatcca acagtcccac ggcggctcca gcaaacaggc attatccgta gccaacggcc
     8401 ttcaagccga tgtcgtaacc atgaaccaat cctccgacat cgacctgctc gaaaaaaaag
     8461 gactggtaga aaaaggctgg caacaagccc tccccgacca cgccgcgccc tacaccagca
     8521 ctatggtttt ccttgtccga aaaaacaacc ccaaacagat ccgcgattgg aacgaccttg
     8581 ccaaagacgg cgttaacatc gtcatcgcca atcccaaaac ctcgggcaac ggacgctacg
     8641 ccttcctcgg cgcatacggt tacggtctga aagccaccaa cggcaacgaa caggaagccc
     8701 aaaaactcgt cgcatccatc ctcaaaaaca cccccgtttt tgaaaacggc ggacgcgccg
     8761 ccaccaccac cttcacacaa cgcaacatcg gcgacgtact cattactttt gaaaacgaag
     8821 ccaactacgt cagcaaaaaa ctgacccaag gacagtttga aatcgtctat ccgagctaca
     8881 ccatttccgc cgaaagcccc gtcgccgtcg tcaacagcgt cgtcgcgaaa aaaggcacgc
     8941 aaaaaaccgc ccgcgcctat ctcgaatacc tttggagcga accggcgcaa gaactcgccg
     9001 cctcactcta cctgcgcccc cgcaaccccg aagtattggc aagacacaaa gccgacttcc
     9061 cagacttaga caccttctct cccgaagaaa aattcggcgg atgggacaac atcatgaaaa
     9121 cctacttcgc tgacggcggc atattcgacc gcctgaccgc acaaaaatga ccgctatgcc
     9181 gtctgaaccg cctttcagac ggcattccac acatcaaaac agaaaaaccg cgcccaaaat
     9241 catcatcaca agacacaacg gcaaaccgga tacaaaaccc aacaccgccg ccaaaatgcc
     9301 gtctgaagcc gtcggcgcaa ccatccttat ctggggcata actttcctta accatccctt
     9361 ttgacagcca aataaacagt gcttttgcct gtcagaaaca aaaccaatat tttgcagttc
     9421 gtatcggaac atttatagtg gattaacaaa aaccagtaca gcg
//
LOCUS       DAXHNP010000076         9442 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.076, whole genome shotgun sequence.
ACCESSION   DAXHNP010000076 DAXHNP010000000
VERSION     DAXHNP010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9442
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.076"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(144..1586)
                     /gene="aldA"
                     /locus_tag="ACFM5C_001281"
     CDS             complement(144..1586)
                     /gene="aldA"
                     /locus_tag="ACFM5C_001281"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HFC6068975.1"
                     /translation="MKQLAMYINGRFENDFNGEWRDVLNPSTEEAIAREPKGGRADVD
                     RAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERADELTDTIVAEGGKTKDLARVEV
                     MFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVIAGILPWNFPFFLIARKM
                     GPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQ
                     VDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVG
                     NTGQICNCAERVYVHSSLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVK
                     AVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSA
                     FDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAG
                     WKKSGIGGADGKHGLEEYLQTQVVYLETDI"
     gene            complement(1621..1821)
                     /locus_tag="ACFM5C_001282"
     CDS             complement(1621..1821)
                     /locus_tag="ACFM5C_001282"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068976.1"
                     /translation="MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYA
                     DIVASRLNISKETCTVIYLGIN"
     gene            complement(1830..2219)
                     /locus_tag="ACFM5C_001283"
     CDS             complement(1830..2219)
                     /locus_tag="ACFM5C_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6068977.1"
                     /translation="MLYKCKIKKLDNTIEEAVLIEINGYELHCFISYCPFKIFENQFY
                     EVELSYEIFNDYILDKSTSNIGFRKIDDSFKYEITAELKNNHLTLQNIQFEEDEYLIN
                     YSYLDNCLVTLTVDRISVSFIREIQAA"
     gene            complement(2427..3344)
                     /locus_tag="ACFM5C_001284"
     CDS             complement(2427..3344)
                     /locus_tag="ACFM5C_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6068978.1"
                     /translation="MEKAEHLNSSRFVNLVKSGGGSYVEGSYRFDTLSNGISIHGGTV
                     TARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDADGGKIVLIAVGEEVLFSRY
                     LYRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNLSPNLRGSAASCLKAVPK
                     GHLGETLRREADVLRLLSDLWDTVSDGIGPAAGQTAEADAMPSEDFNRTLNAAFADGA
                     HQVNRLTDALNISERTLQRRMRDHFGITASEWLHHKQMQHALYLLQNGGKSIGETAYL
                     CGYRHVSSFTQAFRQYFGSTPAETKKENR"
     gene            3516..4316
                     /locus_tag="ACFM5C_001285"
     CDS             3516..4316
                     /locus_tag="ACFM5C_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6068979.1"
                     /translation="MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSG
                     KTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFD
                     NIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALD
                     PEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAH
                     GEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG"
     gene            4365..5141
                     /gene="mlaE"
                     /locus_tag="ACFM5C_001286"
     CDS             4365..5141
                     /gene="mlaE"
                     /locus_tag="ACFM5C_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HFC6068980.1"
                     /translation="MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVR
                     QVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLA
                     AILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIF
                     NVAGIFGAYLVGVTWLGLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQ
                     GFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD"
     gene            5192..5686
                     /gene="mlaD"
                     /locus_tag="ACFM5C_001287"
     CDS             5192..5686
                     /gene="mlaD"
                     /locus_tag="ACFM5C_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HFC6068981.1"
                     /translation="MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGGSDKTYAVY
                     ADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQIL
                     TSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
                     KAAE"
     gene            5723..6313
                     /locus_tag="ACFM5C_001288"
     CDS             5723..6313
                     /locus_tag="ACFM5C_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HFC6068982.1"
                     /translation="MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKS
                     GDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
                     MLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAI
                     EGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK"
     gene            6370..6648
                     /locus_tag="ACFM5C_001289"
     CDS             6370..6648
                     /locus_tag="ACFM5C_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HFC6068983.1"
                     /translation="MHTELNNGTLHISGDVTVKTLTAAAFTRFRQQCRLKDTRAVDLS
                     GVGRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS"
     gene            6645..7472
                     /locus_tag="ACFM5C_001290"
     CDS             6645..7472
                     /locus_tag="ACFM5C_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFC6068984.1"
                     /translation="MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQAD
                     RYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGIN
                     TTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGIT
                     SVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRA
                     RQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP"
     gene            7597..7959
                     /locus_tag="ACFM5C_001291"
     CDS             7597..7959
                     /locus_tag="ACFM5C_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ"
                     /protein_id="HFC6068985.1"
                     /translation="MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSY
                     LVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVIT
                     DLEHEPLAREAFQPINLN"
     gene            7959..8342
                     /locus_tag="ACFM5C_001292"
     CDS             7959..8342
                     /locus_tag="ACFM5C_001292"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6068986.1"
                     /translation="MKLTVRNYHLDGYGHVNNARYLEFFEEARWAFFEERGLLHELAG
                     LILIVARIDIRYSRPAVEGDVLQFSCRLKTPGTRRIVLTQTITLPNGKTAAEADITLM
                     PVHAATQRTVSLPATLARALEALSE"
     gene            8339..8827
                     /locus_tag="ACFM5C_001293"
     CDS             8339..8827
                     /locus_tag="ACFM5C_001293"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin family protein"
                     /protein_id="HFC6068987.1"
                     /translation="MKKILTAAVVALIGILLAIVLIPDSKTAPAFSLPDLHGKTVSNA
                     DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVK
                     DYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAL
                     AQ"
     gene            complement(8908..9036)
                     /locus_tag="ACFM5C_001294"
     CDS             complement(8908..9036)
                     /locus_tag="ACFM5C_001294"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HFC6068988.1"
                     /translation="MAGVTVGRGSVVGAGAVVTKDIPPYSLAAGNPAVVKKNLPEG"
     gene            complement(9042..9422)
                     /locus_tag="ACFM5C_001295"
     CDS             complement(9042..9422)
                     /locus_tag="ACFM5C_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-o"
                     /protein_id="HFC6068989.1"
                     /translation="MGSKFFFLLLRFAGSVLPPSHMRGIGIVGRRVRGFLARRVSPHI
                     GRGVNIERGAYVFPDTVLGDGSGIGANCEICRGPVVGKNVMMKPECLFYSNNHKFDRS
                     KNALRATRKSVRLRWRTMSGRGAG"
BASE COUNT         2171 a         2641 c         2381 g         2249 t
ORIGIN      
        1 cggcttcgtt taaatttaat ccgctataca aagacaaaaa catcgacctc ggtcatgact
       61 gattgccggt gaaactgtaa aaatgccgtc tgaacctgaa aacgggttca gacggcattt
      121 tctatcgggg ttttaaagcg gcattaaatg tcggtttcca gataaacgac ttgggtttgc
      181 agatattctt ccaaaccgtg tttgccgtcc gcgccgccga tgccggattt tttccagccc
      241 gcgtggaagc cttgcatggc ttcaaagttt tcgcggttga tgtaggtttc gccgaattgc
      301 aggcggcggg taacgtagaa ggcttcgttt aaattagtcg tataaacaga actggtcaga
      361 ccaaactcgc aatcgttagc cagtgcgatg acttggtcaa gcgtgtcgaa agcggaaacg
      421 ggcagcacgg ggccgaaggt ttcttctttc ataatgtcca tactgttgtc ggtgtcggtc
      481 agcagggtcg gctcgaagaa ataaccgcgt ccttcggcgc gtttgccgcc gcagaccagt
      541 ttcgcacctt gtttgactgc ccgttccact ttttcggcaa cggctttgac ggcgcgctct
      601 tcaatcagcg gacccatttc cagcgcgcct gcttcggctt cggcagggtt gccgtagcgc
      661 acgcctttca tggcggcagt cattttttca atgaatgcgt ctttcagact gctgtggaca
      721 taaacgcgct cggcgcagtt gcagatttga ccggtgttgc cgacacgcga agccaagatg
      781 gatttcaccg ccaaatccaa atccgcgtct ttcaaaacga tggcgggggc tttgccgccg
      841 agttccaacg aaactttggt gatgttggcg gaagcggctt ccatcacttg gcggcccgct
      901 tcgacggagc cggtcaggct gaccatatcg acttgcggat gggcggacaa ggcattgccg
      961 atttccgcac ccggaccgtt caccacgttg aacacgcctg cgggcaatcc gaccgcatcg
     1021 acgatttcgg cgaagatgtg gcagttgatc ggggttacgc tgctgggttt gacaacgatg
     1081 gtgttgcccg ttactaaggc gggacccatt ttgcgggcaa tcaggaagaa agggaagttc
     1141 cacggcaaaa tgccggcaat tacgcccagc ggacgtttga acaataaaat gttttcgcgc
     1201 gggcggtcgc tttggatgat ttcgccttcg taacggcgcg cccattcggc ttggtaatcg
     1261 agatagtcgg cggtgaacat cacttccacg cgcgccaagt ctttggtttt gccgccttcg
     1321 gcaacgatgg tgtcggtcag ctcgtcggcg cgttcgcgta tgccttgggc gattttgcgc
     1381 aaatacgcgc cgcgttcgac cgcaggcaga cgctcccaag ccggttgcgc cgcacgcgcc
     1441 gccgctacgg cgcggtcaac gtccgccctg ccgcctttgg gttcgcgggc gatggcctct
     1501 tcggtggacg ggttcaatac gtcgcgccat tcgccgttga aatcgttttc aaagcgtccg
     1561 ttgatgtaca tggccaattg tttcatttcg ggttctccag ttttgtagtc agatgtagtt
     1621 ttagtttatt cccaaataaa ttaccgtaca agtttctttt gaaatgttta gacgagaagc
     1681 tactatgtct gcatattgtt ctgctaattt atattcactc gaatgcaact gccgattatt
     1741 ccaatctgca ttcgcaccag taaaagcccc agcattgccg cctgtggcat aaccaatcgc
     1801 taaactgcca acggtatcca caacaggttt caggctgcct gaatttctct aataaatgaa
     1861 acacttattc tatcaaccgt taatgtaacc aaacaattat caagataaga gtagtttatt
     1921 aaatactcat cttcttcaaa ttgtatattt tgtagggtta gatgattatt ttttaattct
     1981 gccgttattt catacttgaa actatcatct atttttctaa atccaatatt tgaagttgat
     2041 ttatccagta tgtaatcatt aaagatttca taggataatt ccacttcata aaattgattt
     2101 tcaaatattt tgaatgggca gtacgatata aaacaatgta gttcataacc atttatttca
     2161 atcaatactg cctcttcaat ggtgttatct aactttttga ttttacattt atataacatt
     2221 tatcttgcct ttggataaat tgttttgttt tttggattgt tattcaaagt tctccaaaag
     2281 tcttttcctg attttgtatg tatcgtggta atactaccat tttcattggt tccaacaaaa
     2341 ataaatttag attgaccttt ggaatcagta cccaaaaact gaacatatcc agacatgcgg
     2401 atttcgggtt ttaaatcaaa tgcggcttat cggttttctt ttttggtttc cgcaggcgtg
     2461 ctgccgaaat attgcctgaa tgcctgagta aagctggaaa cgtggcggta gccgcacaaa
     2521 tacgcggttt cgcctatgct tttgcccccg ttttgcaaca ggtagagcgc gtgctgcatt
     2581 tgtttgtggt gcagccactc gcttgcggta ataccgaaat ggtcgcgcat acggcgttgc
     2641 agcgtccttt cactgatgtt cagcgcgtct gtcagccggt tgacttggtg tgcgccgtcg
     2701 gcaaacgcgg catttagggt gcggttgaag tcttcagacg gcatagcgtc tgcttccgcc
     2761 gtttgccccg ccgccggccc gatgccgtct gaaaccgtgt cccacaagtc cgacagcagc
     2821 cgcaaaacgt ccgcctcgcg gcgcaatgtt tcgcccaaat gcccctttgg gacagctttc
     2881 aggcaggatg ccgccgagcc gcgcaggttt ggggacaaat tccatattct gaccggttcg
     2941 cggtaaagca ggggtgcgaa acgcgcatac tccggacgca gcagccattg ttccatacct
     3001 ttaatggtca ttttgaccgt tttgccgcct cggtaaagat agcggctgaa caggacctct
     3061 tccccgacag caattaggac gatcttgccg ccatccgcat cgatttggaa gcggcggcgg
     3121 ttgatgccga agtccaaact gccttccagc aagagcacga acgacacata aggttcggcg
     3181 aggcggctgc tgcaaaaatc gcaccgtgcc gttaccgtgc cgccgtggat ggaaatgccg
     3241 ttggacaaag tatcgaaacg gtagctgccc tccacatagc tgccgccgcc gcttttgacc
     3301 agattgacga accggctgct gttcaaatgt tctgcttttt ccatagtttt ctgataaagg
     3361 ttatcatttg aaagataaca tttttcgcca cagcaaacaa tccgccgcca caacggcatt
     3421 ttcacaacat ttaccgtccg tatgccgtct gaaaattgcc cgtcttcccg ataagcctta
     3481 aaatacacgc cgtcaaacct accgtccgtc cgtacatgag cccatccccc tttatcgaaa
     3541 tgaaagacgt cgccttcgcg tatggcgacc gcccgattct gaagaacatc aatttcagca
     3601 ttccgcaagg caattttgct gccgtaatgg gcggttcggg cagcggcaaa accacgctga
     3661 tgcgactgat tacaggacag attcgtccgc agtccgggca ggttttgatt gaaggacggg
     3721 atttggcggg cttttcggct gacgagttgt atgaacaccg ccgccgtatg ggcgtattgt
     3781 tccaacacgg cgcgctgttt accgatttgt ctgtatttga caatattgct tttccgatgc
     3841 gcgaactgac gcgcctgccg gaagcggtga ttcgagattt ggttttgttg aaactgaacg
     3901 cggtcgggct gcgcggcgtg gaaaacctga tgccgtccga gttgtccggc gggatgtcgc
     3961 gccgcgtcgc gcttgcccgc acaatcgcgc tcgatcccga aattatgttg tacgacgagc
     4021 cgtttaccgg tctcgatccg atttccttgg gcgtgattgc ccacttgatc agccgcgtca
     4081 acaaggcttt gcgttcgacc agtattatgg tcacgcacga cattgaaaaa tctttggaaa
     4141 tcgtcgatca ggtgattttc ttggcgcacg gcgaaattat gttctccggc tcgccgcagg
     4201 aaatgcgcga actggattcg ccttgggtgc gccagtttgt cggcgggctg gcagacggcc
     4261 ccgtggcata ccgttatccg gcgcaaacgt cgttgcagca ggatttgctc gggtaaattg
     4321 agccggtgcc gtctgaaacc gttgaacttt acatatagaa atttatgaat tttatccgtt
     4381 ccgtcggggc gaaaaccctc ggccttattc aatccctcgg cagtattacg ctgtttctgc
     4441 tgaacattct ggcgaagtcc ggtacggctt tcgtccgtcc gcgcctgagc gtgcgccaag
     4501 tgtattttgc cggcgtgctg tcggtgctga ttgttgccgt ttcggggctg ttcgtcggca
     4561 tggtcttggg tttgcagggc tatacgcagt tgtcgaaatt caaatccgcc gatattttgg
     4621 gctatatggt tgcggcttcg ctgttgcgcg aactgggtcc ggtgttggcg gcgattctgt
     4681 ttgccagcag cgcgggcggt gcgatgacca gcgaaatcgg tttgatgaaa acgaccgaac
     4741 agctcgaagc gatgaacgtg atggcggtaa accccgtcgc ccgagtggtt gcgccgcgct
     4801 tttgggcggg cgtgttttcc atgccgcttt tggcttcgat tttcaacgtg gcgggtattt
     4861 tcggcgcgta tttggtcggt gtaacctggc tgggcttgga cagcggtatt ttctggtcgc
     4921 aaatgcagaa caatatcacg atacattacg atgtaatcaa cggtctgatt aaatccgccg
     4981 cgttcggcgt ggcggtaacg ctgattgccg tgcatcaggg cttccattgc gtcccgactt
     5041 cggaaggcat tttgcgcgcc agcacgcgca cggtggtttc gtccgccctg acgattttgg
     5101 cggtcgattt tatattgacc gcgtggatgt ttacagattg acaggccgtc tgaagacgaa
     5161 acgcggaaca tcggatattc aaggaacttt aatgaaaaag aacatattgg aattttgggt
     5221 cggactgttc gtcctgattg gcgcggcggc ggttgccttt ctcgctttcc gcgtggccgg
     5281 cggtgcggcg ttcggcggtt cggacaaaac ctacgccgtt tatgccgatt tcggcgacat
     5341 cggcggtttg aaggtcaatg cccccgtcaa atccgcaggc gtattggtcg ggcgcgtcgg
     5401 cgctatcgga cttgacccga aatcctatca ggcgagggtg cgcctcgatt tggacggcaa
     5461 gtatcagttc agcagcgacg tttccgcgca aatcctgact tcgggacttt tgggcgagca
     5521 gtacatcggg ctgcagcagg gcggcgacac ggaaaacctt gctgccggcg acaccatctc
     5581 cgtaaccagt tctgcaatgg ttctggaaaa ccttatcggc aaattcatga cgagttttgc
     5641 cgagaaaaat gccgacggcg gcaatgcgga aaaagccgcc gaataaacgt atgccatcat
     5701 attcaaacta ggacacttaa tcatgaaaaa atcctccctc atcagcgcat tgggcatcgg
     5761 tattttgagc atcggcatgg catttgccgc tcctgccgac gcggtaaacc aaatccgtca
     5821 aaacgccact caagtattga gcatcttaaa aagcggtgat gccaacaccg cccgccaaaa
     5881 agccgaagcc tatgcgattc cctatttcga tttccaacgt atgaccgcat tggcggtcgg
     5941 caacccttgg cgcaccgcgt ccgacgcgca aaaacaagcg ttggccaaag aatttcaaac
     6001 cctgctgatc cgcacctatt ccggcacgat gctgaaatta aaaaacgcca acgtcaacgt
     6061 caaagacaat cccatcgtca ataaaggcgg caaagaaatc atcgtccgcg ccgaagtcgg
     6121 cgtacccggg caaaaacccg tcaacatgga cttcaccacc taccaaagcg gtggtaaata
     6181 ccgtacctac aacgtcgcca tcgaaggcgc gagcctggtt accgtgtacc gcaaccaatt
     6241 cggcgaaatc atcaaagcga aaggcgtgga cggactgatt gccgagttga aggctaaaaa
     6301 cggcagcaag taatccataa gccatgccgc cagactgaag atggcatgga ttttttccta
     6361 ccgaacacta tgcatacaga actcaacaac ggaacactgc acatcagcgg cgacgtaacc
     6421 gtcaaaaccc tgaccgccgc cgcctttacc cgcttcagac agcaatgtcg tctgaaagac
     6481 acccgcgcgg ttgatttgag cggcgtcgga cgcgccgatt ccgcctgcgt gtcgctgctg
     6541 ctcgaagtgc tgcgcggttg caaaggcagc gtcaggctga ccggcattcc cgaatccgtg
     6601 cgcgcgctgt ccgaactgta cgaaatcaaa gactggctga aatcatgaaa aaaaccgcct
     6661 atgccttcct cctgctgatc gggttcgctt ccgcccctgc atttgccgaa acccgccccg
     6721 ccgaccctta tgaaggctac aaccgcgccg ttttcaaatt caacgaccaa gccgaccgct
     6781 acattttcgc ccctgccgcg cgcggctacc gcaaagttgc gccgaaaccc gtccgcgccg
     6841 gcgtgtccaa tttttttaac aacctgtgcg acgtggtcag cttcggcagc aatatcttgc
     6901 gcttggacat caaacgcgca agcgaagacc ttgtccgcgt cggcatcaac accactttcg
     6961 gtttgggcgg gcttatcgac atcgccggcg cgggcggcat tcccgacaat aaaaacacct
     7021 tgggcgacac gtttgcttcg tggggatgga aaaacagcaa ttatttcgtg ttgcccgtct
     7081 tagggccgtc caccgtccgc gacgcgctcg gcacgggtat tacctccgtt tattcgccca
     7141 agaatatcgt cttccgcacc cctgtcggac gctggggcac gactgccgta tccgccgtca
     7201 gtacgcgcga aggtctgctc gatttgaccg acagtctgga cgaagccgcc atcgacaaat
     7261 acagctacac gcgcgacctc tatatgaaag tccgtgcgcg gcagaccggt gcaacacctg
     7321 ccgaaggtac ggaagataac atcgacatcg acgaattggt cgaaagtgcc gaaaccggcg
     7381 cggcggaaac tgccgttcaa gaagattccg tatccgaaac acaggcagaa gcagcagggg
     7441 aagccgaaac gcaacctgga acacaacctt aaagccatgc cgtctgaaaa tccgtgttcg
     7501 gacggcattc ccttctgtcg gaacggacag tccgaaacca cagattgggc tataatctct
     7561 tttttgcgca taccgcgcga cagcaaagga aaaaccatgt acgaagtcaa ccgcagcgta
     7621 ttcgtcctca tccctttaga acctttttgg aactggctgc aaaccctgcc gggcaaccac
     7681 ctcgacggac tgactcttga agacatccaa gccgacgcca attcctacct tgtccgcccg
     7741 tgcgaaaccg ccgacgaagt atgggacgaa atcgaagccc gttttgaaga cattttcgcc
     7801 gccgaacttg ccgactggtg cgaagacgaa cgcgagtggc ctgcgctcga tgccgacatt
     7861 ttcaacgaat ggttcgacat ccagctttct accgtcatca ccgacctcga acacgaaccg
     7921 cttgcccgcg aagccttcca acccatcaac ctgaactgat gaagctgacc gtccgcaact
     7981 accatctcga cggctacggc catgtcaaca atgcgcgcta cctcgaattt ttcgaagaag
     8041 cgcgctgggc gttttttgaa gaacgcggac tgctgcacga gttggcaggc ctcatactga
     8101 ttgtcgcccg catcgacatc cgatacagcc gccccgccgt cgaaggcgac gtattgcagt
     8161 tttcatgccg cctgaaaacc cccggcacgc gccgtattgt gctgacccag acgattacac
     8221 tgccaaacgg caaaaccgcc gcagaagccg acatcaccct gatgcccgtc cacgccgcca
     8281 cacaacgcac cgtcagcctg cccgccaccc ttgcccgcgc attggaagcc ttgtccgaat
     8341 gaaaaaaata ctcaccgccg ccgtcgtcgc actgatcggc atcctccttg ccatcgtcct
     8401 catccccgac agcaaaaccg cgcccgcctt ctccctgccc gacctgcacg gaaaaaccgt
     8461 ttccaacgcc gacctgcaag gcaaagtaac cctgattaat ttttggtttc cctcctgtcc
     8521 gggttgtgtg agcgaaatgc ccaaaatcat taaaacggca aatgactata aaaacaaaaa
     8581 cttccaagtc cttgccgtcg cccagcccat cgatccgata gaaagcgtcc gccaatatgt
     8641 caaagactac ggtttgccgt ttaccgtcat gtatgatgcg gacaaagctg tcggacaggc
     8701 gttcggtaca caggtttatc cgacttccgt ccttatcggc aaaaaaggcg aaatcctcaa
     8761 aacttatgtc ggcgaacccg atttcggcaa actctaccaa gaaatcgata ccgcgctggc
     8821 gcaatagcga tgccgtctga agcgcaaaaa acagaaacga tgttcctgtt ttttcagatc
     8881 atccgccccg acacgttcag acggcattca accttccggc agattctttt tcaccactgc
     8941 cggattgcct gccgccaaag agtagggcgg aatgtctttt gtaaccaccg cgcctgcgcc
     9001 cacgaccgaa ccgcgtccga cggttacgcc cgccattaca atcaccctgc gccccggcca
     9061 gacatcgtcc tccaacgtaa tcggacggat ttccgtgtag ccctcaaagc gttttttgaa
     9121 cggtcaaact tgtggttatt tgaataaaac agacattccg gcttcatcat cacatttttg
     9181 ccgaccaccg gcccacggca gatttcacag tttgccccga tgcccgagcc gtcgcccaaa
     9241 accgtatccg gaaacacata cgccccgcgt tcgatattga ccccgcgtcc gatatgcgga
     9301 gaaacccgcc gcgccaaaaa accgcgtacc cgtctgccga cgatgccgat gccgcgcata
     9361 tgtgacggcg gcaacaccga accggcaaaa cgcagcagca ggaaaaagaa ttttgatccc
     9421 atcaaacctc cctcaaaaga ac
//
LOCUS       DAXHNP010000077         9320 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.077, whole genome shotgun sequence.
ACCESSION   DAXHNP010000077 DAXHNP010000000
VERSION     DAXHNP010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9320
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.077"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            163..1506
                     /locus_tag="ACFM5C_001296"
     CDS             163..1506
                     /locus_tag="ACFM5C_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HFC6068990.1"
                     /translation="MIKIKKGLNLPIAGRPEQVIYDGPVITEVALLGEEYAGMRPSMK
                     VKEGDAVKKGQVLFEDKKNPGVVFTAPVSGKIAAIHRGEKRVLQSVVIAVEGNDEIEF
                     ERYAPEALANLSGEEVRRNLIQSGLWTALRTRPFSKIPAVDAEPFAIFVNAMDTNPLA
                     ADPVVVIKEAAEDFRRGLLVLSRLTERKIHVCKAAGADVPSENAANIETHEFGGPHPA
                     GLSGTHIHFIEPVGANKTVWTINYQDVIAIGRLFATGRLNTERVIALGGSQVNKPRLL
                     RTVLGAKVSQITAGELVDADNRVISGSVLNGAITQGAHDYLGRYHNQISVIEEGRSKE
                     LFGWVAPQPDKYSITRTTLGHFLKNKLFKFTTAVNGGDRAMVPIGTYERVMPLDILPT
                     LLLRDLIVGDTDSAQALGCLELDEEDLALCSFVCPGKYEYGPLLRKVLETIEKEG"
     gene            1509..2741
                     /locus_tag="ACFM5C_001297"
     CDS             1509..2741
                     /locus_tag="ACFM5C_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HFC6068991.1"
                     /translation="MGLKHFLEKIEPHFLPGGKHEKWYALYEAAATIFYTSGAVTRKA
                     AHVRDALDSKRMMILVWLALFPAMFYGMYNVGAQAFGALTPDLLQQSIANDWHYALAN
                     ALGINMSSEAGVLGKMLFGAIYFLPIYATVFIVGGFWEVLFATVRKHEINEGFFVTSI
                     LFALIVPPTLPLWQAALGISFGVVVAKEVFGGTGKNFMNPALAGRAFLFFAYPANLSG
                     DAVWTAVDGYSGATALAQWAAHGADGLKNAVTGQTITWMDAFIGKLPGSIGEVSTLAL
                     LIGGAFIVFARIASWRIIAGVMIGMIAMSSLFNFIGSDTNAMFAMPWYWHLVVGGFAI
                     GMLFMATDPVSASFTNVGKWWYGALIGVMCVLIRVVNPAYPEGMMLAILFANLFAPIF
                     DYFVAQANIKRRKARSNG"
     gene            2734..3510
                     /locus_tag="ACFM5C_001298"
     CDS             2734..3510
                     /locus_tag="ACFM5C_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HFC6068992.1"
                     /translation="MAKKFDKDSFSGTLIVVLAVSLICSIIVAGAVVGLKPIQEKQKL
                     QDKQGYILSVAGLMDKNTDISKTFAERIEQRVVDLATGEYVADAPKDFSARVAGKDPA
                     QSIQIKPEDDLAGIKSRAKYTEVYLVKGEDGKIGQIILPMHGNGLWSVMYGFVAIQPD
                     GNTINGITYYEQGETPGLGGEIGNPLWQQKFVGKKLFDGQGKLALHVGKGAGSDKEHG
                     VDALSGASLTSKGVQGSFAYWFGENGYIPYLNKLKSAGAQ"
     gene            3510..4136
                     /locus_tag="ACFM5C_001299"
     CDS             3510..4136
                     /locus_tag="ACFM5C_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HFC6068993.1"
                     /translation="MADMKRLKHLMFSPFINNNPIALQVLGICSALAVTTKLQTAIVM
                     GISVALVTGFSSFFISLVRNYIPNSIRIIVQMAIIASLVTLVDQLLQAFAYELSKQLS
                     VFVGLIITNCIVMGRAEAFAMKEPPLESLIDGIGNGAGYGIMLLVVATVRELIGSGKL
                     LGYTVFQTVQDGGWYQTNGLFLLAPSAFFIIGFLIWGLRTWKPEQAEE"
     gene            4140..4733
                     /gene="nqrE"
                     /locus_tag="ACFM5C_001300"
     CDS             4140..4733
                     /gene="nqrE"
                     /locus_tag="ACFM5C_001300"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HFC6068994.1"
                     /translation="MEHYLSLFIKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGVA
                     VIFVLGLSVPVNQLVYSLLKDGAIVEGVDLTFLKFITFIGVIAALVQILEMFLDKFVP
                     ALYNALGIYLPLITVNCAIFGAVSFMAQREYNFGESVVYGFGAGLGWMLAIVALAGIT
                     EKMKYSDAPKGLKGLGITFIAAGLMAMAFMSFSGIQL"
     gene            4747..5964
                     /gene="nqrF"
                     /locus_tag="ACFM5C_001301"
     CDS             4747..5964
                     /gene="nqrF"
                     /locus_tag="ACFM5C_001301"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HFC6068995.1"
                     /translation="MEIILGIVMFTVIVLVLALMILFAKSKLVSEGDITIKVNGEKEL
                     TMPAGGKLLGALANEGIFIPSACGGGGSCGQCRVVVKSGGGDILPTELSHISKREARE
                     GCRLSCQVNVKTDMDIEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFR
                     AGGYIQIEAPSHTVAYKDFDIPKEYHEDWDKYNLWQYVSKVDEPILRAYSMASYPEEK
                     GIIMLNVRIATPPPRVPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFI
                     GGGAGMAPMRSHIFDQLKRLNSKRKITFWYGARSKREMFYVEDFDQLAAEFPNFTWHV
                     ALSDPLPEDNWDGYTGFIHNVVYENHLKNHEAPEDCEFYMCGPPIMNQSVIKMLKDLG
                     VEDENILLDDFGG"
     gene            6116..7171
                     /locus_tag="ACFM5C_001302"
     CDS             6116..7171
                     /locus_tag="ACFM5C_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6068996.1"
                     /translation="MPSETRLPNFIRALIFALGFIFLNACSEQTAQTVTLQGETMGTT
                     YTVKYLSNNRGKLPSPAEIQKRIDDALKEVNRQMSTYQPDSEISRFNQHTAGKPLRIS
                     SDFAYVTAEAVRLNRLTHGALDVTVGPLVNLWGFGPDKSVTREPSPEQIKQAASYTGI
                     DKIILKQGKDYASLSKTHPKAYLDLSSIAKGFGVDKVAGELEKYGIQNYLVEIGGELH
                     GKGKNARGEPWRIGIEQPNIVQGGNTQIIVPLNNRSLATSGDYRIFHVDKNGKRLSHI
                     INPNNKRPISHNLASISVVADSAMTADGLSTGLFVLGETEALKLAEREKLAVFLIVRD
                     KGGYRTAMSSEFEKLLR"
     gene            7197..7412
                     /gene="nqrM"
                     /locus_tag="ACFM5C_001303"
     CDS             7197..7412
                     /gene="nqrM"
                     /locus_tag="ACFM5C_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HFC6068997.1"
                     /translation="MKTLLLTFGIFLTVIIGMAVGYIFSKRSIKGSCGGITALGMKKM
                     CDCDTPCDTLQKKLDEEKQAGGIRVDR"
     gene            complement(7536..8114)
                     /gene="grpE"
                     /locus_tag="ACFM5C_001304"
     CDS             complement(7536..8114)
                     /gene="grpE"
                     /locus_tag="ACFM5C_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFC6068998.1"
                     /translation="MSEQTQQQNSEEAVENVEAVETVETVGNADGVQEQAAAEPAYED
                     LQARIAELEAQLKDEQLRALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEM
                     ALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQ
                     EPNTVVGVMKKGYTLSDRVLRPAMVTVAQKEA"
     gene            8298..9116
                     /gene="cysE"
                     /locus_tag="ACFM5C_001305"
     CDS             8298..9116
                     /gene="cysE"
                     /locus_tag="ACFM5C_001305"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFC6068999.1"
                     /translation="MKKDHLNTTGFDLWHTIREETAAAVSAEPMLASFLHQTVLRHES
                     LGSVLAYHLSSKLGSPIMDVRALFEIYQQALGSDTQIGKCVEADLKAIYERDPACDEY
                     SLPLLYFKGFHAIQAHRINHRLYLDGRKTLAYFLQNRMSEVFGVDIHPAARFGYGLML
                     DHATGFVAGETAVLGNNISILHGVTLGGSGKEGGDRHPKIGDGVMIGANASILGNIRI
                     GSNAKIGAGSVVVSDVPPSITVVGVPAKPVARSLKTPSADMDQNIQFTEIDFMI"
BASE COUNT         2262 a         2585 c         2301 g         2172 t
ORIGIN      
        1 acagcttccg caaggaaaaa agcagcaaat ctgacaaaca ggtacaattc ctgatagaat
       61 ctaacacttt gctacattaa tttattcaat gcttttgatg ccacgcgaca cggtatcaaa
      121 acacgccgtt tttaccttaa ccatcacaag taatgcaaat atatgattaa aatcaaaaaa
      181 ggtctaaacc tgcccatcgc gggcagaccg gagcaagtca tttatgacgg gcccgtcatt
      241 accgaagtcg cgttgcttgg cgaagaatat gccggtatgc gcccctcgat gaaagtcaag
      301 gaaggcgatg ccgtcaaaaa aggccaagtg ctgtttgaag acaaaaagaa tccgggcgtg
      361 gtgtttaccg cgccggtttc aggcaaaatc gccgccatcc atcgcggcga aaagcgcgtg
      421 cttcagtcgg ttgtgattgc cgttgaaggc aacgacgaaa tcgagttcga acgctacgcg
      481 cccgaagcgt tggcaaactt aagcggcgaa gaagtgcgcc gcaatctgat tcaatccggt
      541 ttgtggactg cgctgcgtac ccgtccgttc agcaaaatcc ctgccgtcga tgccgagccg
      601 ttcgccatct tcgtcaatgc gatggacacc aatccgctgg cggcagaccc tgtggttgtg
      661 atcaaagaag ccgccgagga tttcagacga ggtttgctgg tattgagccg tttgaccgag
      721 cgtaaaatcc atgtgtgtaa ggcagctggc gcagacgtgc cgtctgaaaa tgctgccaac
      781 atcgaaacac atgaattcgg cggcccgcat ccggccggtt tgagtggcac gcacattcat
      841 ttcattgagc cggtcggtgc aaacaaaacc gtttggacca tcaattatca agatgtaatt
      901 gccatcggac gtttgtttgc aacaggccgt ctgaacaccg agcgcgtgat tgctttgggt
      961 ggttctcaag tcaacaaacc acgcctcttg cgtaccgttt tgggtgcgaa agtatcgcaa
     1021 attactgcgg gcgaattggt tgacgcagac aaccgcgtga tttccggttc ggtattgaac
     1081 ggcgcgatta cacaaggcgc gcacgattat ttgggacgct accacaatca gatttccgtt
     1141 atcgaagaag gccgcagcaa agagctgttc ggctgggttg cgccgcagcc ggacaaatac
     1201 tccatcacgc gtacgaccct cggccatttc ctgaaaaaca aactcttcaa gttcacgaca
     1261 gccgtcaacg gtggcgaccg cgccatggtg ccgattggta cttacgagcg cgtaatgccg
     1321 ctggacatcc tgcctaccct gcttttgcgc gatttaatcg tcggcgatac cgacagcgcg
     1381 caggcattgg gttgcttgga attggacgaa gaagacctcg ctttgtgcag cttcgtctgc
     1441 ccgggcaaat acgaatacgg cccgctgttg cgtaaggtgc tggaaaccat tgagaaggaa
     1501 ggctgattat gggcttgaaa cattttctgg aaaaaatcga accgcacttc ctgccgggcg
     1561 gcaaacatga aaaatggtat gccctctacg aagctgcggc gacgattttc tatacatccg
     1621 gtgcggtaac gcgcaaagcg gcacacgtcc gcgatgcgct cgactccaaa cgcatgatga
     1681 ttttggtgtg gctggctttg ttccctgcca tgttctacgg tatgtacaac gtcggcgcac
     1741 aggcattcgg tgcgttaacg cccgatttgc tgcaacaaag catcgccaac gactggcatt
     1801 acgcccttgc caacgctttg ggcatcaata tgtcgtctga agcgggcgtg ttgggcaaaa
     1861 tgctgttcgg cgcgatttac ttcctgccga tttacgcgac cgtatttatt gtcggcggtt
     1921 tctgggaagt tttgttcgcc accgtgcgca aacatgaaat caacgaaggt ttctttgtta
     1981 cctcgattct gtttgcctta atcgttccgc ccacgctgcc gctgtggcag gcagctttgg
     2041 gtatttcttt cggcgtggtg gttgcgaaag aagtattcgg cggtacaggt aaaaacttca
     2101 tgaaccctgc gctggcaggc cgtgccttcc tgttcttcgc ctaccctgcc aacttgagcg
     2161 gcgatgcggt ttggacggcg gttgacggct attccggcgc aaccgcgctg gcgcaatggg
     2221 cggcacacgg tgcagacggc ctgaaaaacg ccgtaaccgg tcaaaccatc acttggatgg
     2281 atgcgtttat cggcaaactg cccggctcca tcggcgaagt atccactttg gcactcttaa
     2341 tcggcggcgc gtttatcgtg tttgcccgca tcgcttcttg gcgcattatt gccggcgtga
     2401 tgatcggtat gattgccatg tcttcgctgt tcaacttcat cggttcggac accaacgcta
     2461 tgtttgctat gccttggtac tggcatttgg tcgtcggcgg cttcgccatc ggtatgctgt
     2521 ttatggcaac cgaccccgtt tctgcttcct ttaccaatgt cggcaaatgg tggtacggcg
     2581 cgctaatcgg tgtgatgtgc gtattgatcc gtgtggtcaa tccggcttac cccgaaggca
     2641 tgatgttggc gattctgttt gccaacctgt ttgccccgat tttcgactat ttcgtcgcac
     2701 aagcgaacat caaacgcaga aaggcgcgca gcaatggcta agaaattcga taaagacagc
     2761 ttcagcggca cgctgattgt cgtgttggcg gtcagcctga tttgttccat catcgttgct
     2821 ggtgcggtcg tcggtttgaa acccatccaa gagaaacaaa aactccaaga caaacaaggc
     2881 tatatcttga gcgtagccgg tttgatggat aaaaacaccg acattagcaa aacctttgcc
     2941 gagcgtatcg agcaacgtgt tgtcgatttg gcgaccggcg aatatgtcgc tgatgcgcct
     3001 aaagacttca gcgcacgcgt tgccggcaaa gaccctgccc aaagcatcca aatcaaacct
     3061 gaagacgatt tggcaggcat caaaagccgt gccaaataca ccgaggttta tttggtaaaa
     3121 ggcgaagacg gcaaaatcgg ccaaatcatc ctgccgatgc acggcaacgg tttgtggtcg
     3181 gtcatgtacg gctttgtcgc catccaaccc gacggcaaca ccatcaacgg cattacctac
     3241 tacgagcaag gcgaaacccc gggcttgggc ggcgaaatcg gcaatccttt gtggcagcaa
     3301 aaattcgtcg gcaaaaaact gtttgacgga caaggcaaac tcgccctgca cgtcggcaaa
     3361 ggcgcgggtt cggacaaaga acacggcgta gatgccctct ccggtgcatc gctgacatcc
     3421 aaaggcgtgc aaggttcgtt cgcctactgg ttcggcgaaa acggctatat cccctacctg
     3481 aacaaattga aatcagcagg agcgcaataa tggctgatat gaaacgcttg aaacatttga
     3541 tgttttcacc ctttatcaac aacaacccga ttgccttgca ggttttgggt atttgttcgg
     3601 ctttggcggt taccaccaaa cttcagacgg ccatcgtgat gggtatttcc gtagctttgg
     3661 taaccggttt ttccagcttc ttcatttcgc tggtacgcaa ctacatcccc aacagcatcc
     3721 gtattatcgt gcaaatggcg attatcgcgt cgctggttac gctggtcgac caactcttgc
     3781 aggcatttgc ctacgaattg tccaaacagc tttccgtatt cgtcggtctg attattacca
     3841 actgtatcgt gatgggccgc gccgaagcat ttgcgatgaa agagccgccg ctggaaagcc
     3901 tgatcgacgg catcggcaac ggcgcgggct acgggataat gctgcttgtc gtcgccaccg
     3961 tccgcgaact gattggctcg ggcaaactct tgggctacac cgttttccaa accgtgcagg
     4021 acggcggctg gtatcagacc aacggcttgt tcctgctcgc ccccagcgcg ttcttcatca
     4081 tcggcttttt gatttgggga ctgcgtacct ggaaacccga acaggcggag gaataagcta
     4141 tggaacacta tttgagcctc ttcatcaaat ccgtcttcat tgaaaatatg gcactatcct
     4201 tctttttggg tatgtgcacg tttttggcgg tatccaaaaa agtatccacc gcattcggtt
     4261 tgggtgtggc ggtaattttc gtactcgggc tgtccgtccc tgtcaaccaa ctcgtttact
     4321 cgctgctcaa agacggcgcg attgtcgaag gcgtggattt gacctttttg aaattcatca
     4381 ccttcatcgg cgtgattgcc gctttggtgc agattttgga aatgttcttg gataaattcg
     4441 tccccgccct ctataacgca ttgggcatct acctgccgct gattaccgtg aactgcgcga
     4501 ttttcggcgc cgtatcgttt atggcgcaac gcgaatacaa cttcggcgaa tccgttgtat
     4561 acggcttcgg cgcgggcttg ggctggatgt tggcgattgt cgctttggcg ggcattaccg
     4621 aaaaaatgaa atattcggac gctcccaaag gcctcaaagg cttgggcatt acctttatcg
     4681 ccgccggcct gatggcgatg gcgtttatgt cgttctccgg catccagtta taagaaaggg
     4741 atcggtatgg agattatttt aggtatcgtg atgtttaccg tcatcgtttt ggttttggca
     4801 ctgatgattc tgtttgccaa atccaaactg gtcagcgaag gcgacatcac catcaaagtc
     4861 aacggcgaaa aagagctgac gatgcccgcc ggcggcaaac tcttgggcgc gcttgccaac
     4921 gaaggcatct ttatcccctc cgcctgcggc gggggcggtt cgtgcggaca atgccgcgtc
     4981 gtcgtaaaaa gcggcggcgg cgacatcctg ccgaccgagc tgtcccacat cagcaaacgc
     5041 gaagcacgcg aaggctgccg tctgtcttgt caggtcaacg tcaaaaccga catggacatc
     5101 gaagtccccg aagaagtgtt cggcgtgaaa aaatgggaat gcaccgtcat ctccaacgac
     5161 aacaaagcca cgttcattaa agaactcaag cttgccattc ctgaaggcga agaagttcct
     5221 ttccgcgccg gcggctacat tcaaattgaa gccccttctc acactgttgc ctacaaagac
     5281 ttcgacattc ctaaggaata ccacgaagac tgggacaaat acaatctgtg gcaatacgtt
     5341 tccaaagtgg atgagccgat tttgcgcgcc tactctatgg cttcgtatcc tgaagaaaaa
     5401 ggcatcatta tgctgaacgt gcgtatcgcc acgccgcccc cgcgcgtacc cgatgcgcct
     5461 ccgggacaaa tgtcttccta catctggtcg ctcaaacccg gcgacaaagt tacgatttcc
     5521 ggcccgttcg gcgaattttt cgccaaagac accgatgccg aaatggtatt tatcggcggt
     5581 ggtgcgggta tggctccgat gcgttcccac attttcgacc agttgaaacg tttgaactcc
     5641 aaacgcaaaa ttaccttctg gtatggcgca cgttccaaac gcgagatgtt ctatgtcgaa
     5701 gactttgacc aactcgcagc agaattcccg aacttcacgt ggcacgtcgc cctgtccgat
     5761 ccactgccgg aagacaactg ggacggctac acaggcttca ttcacaacgt ggtttacgaa
     5821 aaccatctga aaaaccacga agcgccggaa gactgcgaat tttatatgtg cggcccgccg
     5881 attatgaacc agtccgtcat caaaatgctc aaagacttgg gtgtggaaga cgaaaacatc
     5941 ctcttggacg atttcggcgg ttaaatattc ggcttcaaac acaaaaggaa gaaacctcgg
     6001 tttcttcctt tttttatccg ataccgtccg aacacctttc agacggcatc aacataaaaa
     6061 cataccggcc gttttgcgat ataattcaag ccatttgcca agactatcaa acactatgcc
     6121 gtctgaaaca cgcctgccga actttatccg cgccttgata tttgccctgg gttttatctt
     6181 cctaaacgcc tgttcggaac aaaccgcgca aaccgttacc ctgcaaggcg aaacgatggg
     6241 cacgacctat accgtcaaat acctttcaaa taatcggggc aaactcccct cccctgccga
     6301 aatacaaaag cgcatcgatg acgcgcttaa agaagtcaac cggcagatgt ccacctatca
     6361 gcccgactct gaaatcagcc ggttcaacca acacacagcc ggcaaacccc tccgcatttc
     6421 aagtgacttc gcatacgtta ccgccgaagc cgtccgcctg aaccgcctga cgcacggcgc
     6481 actggacgta accgtcggcc ccttggtcaa cctttgggga ttcggccccg acaaatccgt
     6541 tacccgtgaa ccgtcgccgg aacaaatcaa acaggcggca tcttatacgg gcatagacaa
     6601 aatcattttg aaacaaggca aagattacgc ttccttgagc aaaacccacc ccaaggccta
     6661 tttggattta tcttcgattg ccaaaggctt cggcgttgat aaagttgcgg gcgaactgga
     6721 aaaatacggc attcaaaatt atctggtcga aatcggcggc gagttgcacg gcaaaggcaa
     6781 aaacgcgcgc ggcgaaccgt ggcgcatcgg tatcgagcag cccaatatcg tccaaggcgg
     6841 caatacgcag attatcgtcc cgctgaacaa ccgttcgctt gccacttccg gcgattaccg
     6901 tattttccac gtcgataaaa acggcaaacg cctctcccat atcatcaacc cgaacaacaa
     6961 acgacccatc agccacaacc tcgcctccat cagcgtggtc gcagacagtg cgatgacggc
     7021 ggacggcttg tccacaggat tattcgtatt gggcgaaacc gaagccttaa agctggcaga
     7081 gcgcgaaaaa ctcgctgttt tcctgattgt cagggataaa ggcggctacc gcaccgccat
     7141 gtcttccgaa tttgaaaaac tgctccgcta aacatacaaa ccgattagga aacaccatga
     7201 aaaccctgct ccttaccttc ggcatcttcc tgaccgtcat catcggtatg gcggtcggct
     7261 atattttctc caaacgcagc atcaaaggca gttgcggcgg cattactgcc ttgggtatga
     7321 aaaaaatgtg cgactgcgac acaccttgcg acaccctgca aaagaaactg gatgaagaaa
     7381 aacaggcagg cggcatacgg gttgaccgtt aacgccgaaa caaaatgccg tctgaagccc
     7441 gacaggcggg ttcagacggc attgccgctt tacttcgatc ggtttatacg caaaacgcgc
     7501 ttcaggaaat aaatcagatt attccccaga cgccttcagg cttccttctg tgccaccgta
     7561 accatagccg ggcgcaacac gcggtcggac agcgtataac ccttcttcat cacacccacc
     7621 acggtattcg gctcctgttc gcttgccacc gcctgcatcg cctgatggat attcggatcg
     7681 agcttatcgc ccgctttagg gttgatttcc ttgatttgcg tagcatcaaa tgctttctgc
     7741 aactcgttca aagtcatctg cacgcccatt ttcagcgcat cgaaattgcc gctctgatcc
     7801 aaaagcgcca tttccagata atccttgacc ggcagcattt ccacggcaaa cttctgtccg
     7861 gcgaacttgt gcgtatccgc aatttcctgc tggtggcggc ggcgcaggtt ttgctcgttt
     7921 gccaaagcgc gcagctgctc gtctttcaac tgcgcttcca gctcggcaat ccgcgcctgc
     7981 aaatcctcat aagccggctc tgcggcagcc tgttcctgca caccgtccgc atttcctact
     8041 gtctcgacgg tttccaccgc ctccacattt tcaaccgctt cttcactgtt ttgctgctgt
     8101 gtctgttcgc tcatatcgta tcccttaaaa caaattggaa atcaaaatcc agttattacc
     8161 cgcgcaagat aaggacattt tcaagaaact tcaagcaaaa gcagagaatt tcaaattcat
     8221 tttcaaatcc cctaccgaaa aaataatata gacggtaaga tactgccgac catatcgatt
     8281 ttcaaacgtc atcactcatg aaaaaagacc atttaaacac aaccggtttc gacctctggc
     8341 acaccatccg cgaagaaacc gcggccgcgg tctccgccga accgatgctg gcaagttttt
     8401 tgcaccaaac cgtgttgcgc cacgagtccc tcggctccgt ccttgcctac cacctttcca
     8461 gcaaactcgg cagcccgatt atggacgtgc gcgcgctgtt tgaaatctac cagcaggcgt
     8521 tgggcagcga cacccaaatc ggcaaatgcg tcgaagcaga cttaaaagcc atctacgaac
     8581 gcgatcccgc ctgcgacgaa tattcgctgc cgcttttata tttcaaaggc ttccacgcga
     8641 ttcaggcaca ccgcatcaac catcggctgt atctcgacgg gcgcaaaacg ctggcgtatt
     8701 tcctgcaaaa ccgtatgtcc gaagtattcg gcgtggacat ccatcccgcc gcccgtttcg
     8761 gatacgggct gatgctcgac cacgccaccg gctttgttgc cggcgaaacc gccgtgttgg
     8821 gcaacaatat ttcgattttg cacggcgtaa cgctcggcgg ttcgggcaaa gaaggcggcg
     8881 accgccaccc taaaatcggc gacggcgtga tgatcggcgc aaacgcctcg atattgggca
     8941 atatccgcat cggcagcaat gccaaaatcg gggcgggcag cgtcgtggtt tcagacgtgc
     9001 cgccgtccat cacggttgtc ggcgtacccg ccaaacccgt ggcgcgatcg ctcaaaacac
     9061 cgtcggcgga tatggatcaa aatatccagt ttaccgaaat cgactttatg atttgaatat
     9121 ccgcaccaat gccgtctgaa acgccaaacg ggcttcagac gacattgccc gcttcaagcc
     9181 tgcgccttga tatgccgccg atgtcggcac ttgccagtcg gacaaaatgc cttttattca
     9241 atacacccga ttcccacgca accggaaata tagtggatta acaaaaatca ggacaaggcg
     9301 acgaagccgc agacagtacg
//
LOCUS       DAXHNP010000078         9299 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.078, whole genome shotgun sequence.
ACCESSION   DAXHNP010000078 DAXHNP010000000
VERSION     DAXHNP010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9299
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.078"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(91..1371)
                     /locus_tag="ACFM5C_001306"
     CDS             complement(91..1371)
                     /locus_tag="ACFM5C_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFC6069000.1"
                     /translation="MENSLKEAALKFHELPVPGKISVTPTKSLATDKDLALAYSPGVA
                     APCMEIHADPQNAYKYTAKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKGVLFKKFA
                     GVDVFDIEIDEKDPQKLVDIIAALEPTFGGINLEDIKAPECFYIERELRKRCKIPVFH
                     DDQHGTAIITAAAVLNALRFTGRKIEEATLVCSGAGAAAIACLNQLLDLGLKRENVTV
                     CDSKGVIYQTREDKDRMDESKKFYAVEDNGQRVLADAVKGKDIFLGLSGANLLTPEML
                     NTMNEKPIVFAMANPNPEILPPLAKETRPDVVIGTGRSDFPNQVNNVLCFPFIFRGAL
                     DVGATTINEEMKRACVYALADLAMEEVTEEVVAAYGKKFEFGAEYLIPTPFDSRLLPR
                     VATAAAKAAMESGVATRPIADLEAYAAKLSEWKL"
     gene            complement(1593..2213)
                     /gene="tmk"
                     /locus_tag="ACFM5C_001307"
     CDS             complement(1593..2213)
                     /gene="tmk"
                     /locus_tag="ACFM5C_001307"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFC6069001.1"
                     /translation="MKPQFITLDGIDGAGKSTNLAVIKAWFERRGLPVLFTREPGGTP
                     VGEALREILLNPETKAGLRAETLMMFAARMQHIEDVILPALSDGIHVVSDRFTDATFA
                     YQGGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMVRIGQSREKDRFEQEQAD
                     FFMRVRSVYLNRAAACPERYAIIDSNRSLDEVRNNIEKVLDGHFGC"
     gene            complement(2273..3268)
                     /gene="mltG"
                     /locus_tag="ACFM5C_001308"
     CDS             complement(2273..3268)
                     /gene="mltG"
                     /locus_tag="ACFM5C_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFC6069002.1"
                     /translation="MLRKLLKWTAVFLTVSAAVFAALLFVPKDNGRAYRIKIAKNQGI
                     SSVGRKLAEDRIVFSRHVLTAAAYVLGVHNRLHTGTYRLPSEVSAWDILQKMRGGRPD
                     SVTVQIIEGSRFSHMRKVIDATPDIGHDTKGWSNEKLMAEVAPDAFSGNPEGQFFPDS
                     YEVDAGSSDLQIYQTAYKAMQRRLNEAWESRQDGLPYKNPYEMLIMASLIEKETGHEA
                     DRDHVASVFVNRLKIGMRLQTDPSVIYGMGAAYKGKIRKADLRRDTPYNTYTRGGLPP
                     TPIALPGKAALDAAAHPSGEKYLYFVSKMDGTGLSQFSHDLTEHNAAVRKYILKK"
     gene            3352..3924
                     /gene="ampD"
                     /locus_tag="ACFM5C_001309"
     CDS             3352..3924
                     /gene="ampD"
                     /locus_tag="ACFM5C_001309"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HFC6069003.1"
                     /translation="MDNPATAPWQDGWLQSVRHIPSPNFSPRETGETVSLIVLHNISL
                     PPFEYGTDAVEKLFANRLDPDGHPFFSLIHTLRVSSHFLIKRDGETVQFVSCDNMAYH
                     AGVSSFRGREKCNAFSIGIELEGCDFEPFTEAQYRSLEALLDAICRRYPITAVTGHQD
                     IAPGRKTDPGHFFDWRRIRGKGFPVDRNAV"
     gene            4118..5404
                     /locus_tag="ACFM5C_001310"
     CDS             4118..5404
                     /locus_tag="ACFM5C_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA C-terminal
                     FtsZ-binding domain-containing protein"
                     /protein_id="HFC6069004.1"
                     /translation="MIYIVLFLAAVLAVVAYNMYQENQYRKKVRDQFGHSDKDALLNS
                     KTSHVRDGKPSGGSVMMPKPQPAVKKTAKLQDPAMRNLQEQDAVYIAKQKQAKASPFK
                     TEIETALEESGIIGNSAHTVSEPQTGHSAPKPADAPAKPVPVPQTPAKPLITLKELSK
                     VELPWFDVRFDFISYIALTEAKELHALPRLSNRCRYQIVGCTMDDHFQIAEPIPGIRY
                     QAFIVGIQAVSRNGLASQEELSAFNRQVDAFAQSMGGQTLHTDLAAFIEVASALDAFC
                     ARVDQTIAIHLVSPTSISGVELRSAVTGVGFVLEDDGAFHYTDTSGSTMFSICSLNNE
                     PFTNALLDNQSYKGFSMLLDIPHSPAGEKTFDDLFMDLAVRLSGQLNLNLVNDKMEEV
                     STQWLKDVRTYVLARQSEMLKVGIEPGGKTALRLFS"
     gene            5552..8077
                     /gene="ligA"
                     /locus_tag="ACFM5C_001311"
     CDS             5552..8077
                     /gene="ligA"
                     /locus_tag="ACFM5C_001311"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFC6069005.1"
                     /translation="MNPNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEY
                     YTLDAPSVPDAEYDRLFRELEALELNHPKFKLPDSPTQRVGGEPLAGFAEVRHEVPML
                     SLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL
                     VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQ
                     AENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARRQGGFVAEEHIQELAYF
                     QKLGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQHELGFI
                     SRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQ
                     DEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDLFAEA
                     PAANQTQSVPLYKPYRLPTHCPICRSEIEREEGEAVARCSGGMLCQAQRAQGLIHFAS
                     RKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEG
                     SSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGT
                     LERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIPP
                     ARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQNAA
                     LLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK
                     VSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG"
     gene            8134..>9299
                     /gene="hemW"
                     /locus_tag="ACFM5C_001312"
     CDS             8134..>9299
                     /gene="hemW"
                     /locus_tag="ACFM5C_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFC6069006.1"
                     /translation="MHTISFPNRTRLTALPPLSLYIHIPWCIKKCPYCDFNSHSLKNG
                     LPEAAYIDALLTDLQLELPNIWGRPVETIFFGGGTPSLFQAESIDRLLSGVRSLLRLQ
                     PEAEITLEANPGTFEIEKFQGFKDAGITRLSIGVQSFNDDMLSRLGRVHNGKEALTAI
                     DTALKLFDKVNIDLMYALPNQTVQTALDDVQTAIATGATHISAYHLTMEPNTPFGHTP
                     PKGLPQDEAALDIEDAVHGALESAGFVHYETSAFAKPAMQCRHNLNYWQFGDYLGIGA
                     GAHGKISYPDRIERTVRRRHPNDYLALMQNRPSEAVERKTVAAEDLPFEFMMNALRLT
                     DGVPAAMLQERTGVPSAKIMAQIETARQKGLLETDPAVFRPTEKGRLFLNDLLQ"
BASE COUNT         2185 a         2815 c         2341 g         1958 t
ORIGIN      
        1 ttgtcctgat ttttgttaat ccactatatc aatctgacag caaaatgccg cctgaaaaca
       61 gttcagacgg cattttaaac cgcaaacggc ttacagcttc cattcgctca gcttggcagc
      121 gtaagcttcc aaatctgcaa tcggacgggt tgccacgccg ctttccatcg ctgctttggc
      181 ggcagccgta gcaacgcgcg gcagcaggcg ggaatcgaac ggagtcggaa tcaggtattc
      241 cgcgccgaat tcaaatttct taccgtaagc ggcaaccact tcttcggtta cttcttccat
      301 cgccaaatcc gccaaagcat acacgcaggc gcgtttcatt tcttcgttga tggtcgtcgc
      361 gccgacatcc aacgcaccgc ggaagatgaa cgggaagcac aatacattgt tgacttggtt
      421 cgggaagtcg gagcggccgg taccgataac cacgtccgga cgggtttctt tcgccagcgg
      481 cggcaggatt tccggattcg ggttggccat ggcgaacacg atgggttttt cgttcatcgt
      541 gttcaacatt tcgggggtca gcaggttcgc gccggagagg cccaagaaga tgtctttacc
      601 tttgacggca tcggcaagta cgcgctggcc attgtcttca acggcgtaga attttttgga
      661 ttcgtccatg cggtctttgt cttcgcgggt ttggtaaatc acgcctttgg agtcgcaaac
      721 ggtcacgttt tcgcgtttca agcccaaatc cagcaattgg ttcaagcagg caatcgcggc
      781 cgcacctgcg ccggaacaca ccaaagtcgc ttcttcgatt ttacggccgg taaaacgcag
      841 ggcgttcaat acggcggcgg cggtaatgat ggccgtgccg tgctggtcgt cgtggaatac
      901 ggggattttg cagcgtttgc gtaattcgcg ttcgatgtag aaacactcgg gtgctttgat
      961 gtcttcgagg ttgatgccgc cgaaggtcgg ctctaaagcg gcgatgatgt ccacgagttt
     1021 ttgcgggtct ttttcatcga tttcgatgtc gaacacgtcc acaccggcga attttttgaa
     1081 caatacgcct ttaccttcca tcacgggttt gcccgccagc gcgccgatgt cgcccaagcc
     1141 caaaacggcc gtaccgttgg aaatgacggc gaccaagttg cctttggcgg tgtatttgta
     1201 ggcattttgc ggatcggcat ggatttccat acaaggagcg gctacgcccg gagagtacgc
     1261 caacgccaaa tctttgtcgg tcgccaaaga tttggtcggg gtaacggaaa ttttgcccgg
     1321 aacgggtaat tcgtggaact tgagggcggc ttctttcaat gagttttcca tgtgtcaatc
     1381 ctgttgcgag aaaaagattt gaatcggact gtccgaaacg ctttcgggtc atcatgttac
     1441 gggcggttcg ttaatattgc cgacgcatcc tgccttgtaa ccgagcgtaa ttctatcatg
     1501 ccgaaagttt ggcgcatacc gccattttca cctgcggcac tgccgtttga ttttcggcgc
     1561 gggtggatgc gcttgtttca atatttgccg cattaacagc cgaaatgtcc gtccaacact
     1621 ttttctatgt tgtttctgac ttcatccaag ctgcggttac tgtcgataat ggcgtaccgt
     1681 tcgggacagg cggcggcacg gttcagataa acgctgcgca cacgcatgaa gaaatctgcc
     1741 tgttcctgct cgaaccggtc tttctcgcgc gactgtccga tacgcaccat cgacacttcc
     1801 agcggcacat ccaacagcag ggtcaaatcg gggcgcaaac cgccctgcac ccaatgttcc
     1861 aaaatttcaa tgtcttcaga cggcatcccc cgcccgccgc cctgataggc gaaggttgcg
     1921 tcggtaaaac ggtcggacac gacatggatg ccgtctgaaa gtgcaggcaa tatcacgtct
     1981 tcaatatgct gcattctggc ggcaaacatc atcagtgttt ccgcacgcaa accggctttg
     2041 gtttcagggt tgagcaggat ttcgcgcaag gcctcaccga ccggcgttcc gcccggctcg
     2101 cgcgtgaaca gcacgggcag ccccctccgt tcaaaccatg ccttgatgac ggcaaggttg
     2161 gtggattttc cggcaccgtc tatgccgtcc aaagtgatga attgcggttt catgcttgca
     2221 gttccggtaa gggtatgccg tctgaaaaca caaacttttc agacggcatg gtttattttt
     2281 tcaaaatata tttgcggacg gcggcgttgt gttcggtcaa atcatggctg aactggctca
     2341 agcccgtgcc gtccattttg gacacgaaat acaggtattt ttcaccggac ggatgggcgg
     2401 cggcatcgag tgccgccttg ccgggcagcg caatcggggt tggcggcaga ccgccgcgcg
     2461 tgtaggtgtt gtacggcgtg tcgcggcgca ggtcggcttt acggattttg cccttgtatg
     2521 ccgcacccat gccgtaaatc acggacgggt cggtttgcag gcgcataccg attttcagcc
     2581 ggttgacgaa gacggaagcg acatggtcgc ggtcggcttc atgccccgtt tccttttcga
     2641 taaggctcgc cataatcagc atttcataag ggtttttata aggcagcccg tcctgcctgc
     2701 tttcccatgc ctcgttcaga cggcgttgca tcgccttgta ggcggtttgg taaatctgca
     2761 aatcgctgct acccgcgtca acttcgtagc tgtcggggaa aaactgccct tcaggattgc
     2821 cgctgaaggc atcaggggca acttccgcca tcagtttttc attgctccag cctttggtgt
     2881 cgtgtccgat gtcgggcgtt gcgtcgatga ctttcctcat atgcgaaaaa cgcgaacctt
     2941 cgataatctg cacggtaacg gaatccggcc tgccgccgcg cattttctgc aagatatccc
     3001 aagcagacac ttccgaaggc aatctgtacg tccccgtatg cagcctgttg tgcacaccca
     3061 aaacgtaggc cgccgccgtc aaaacatgcc tgctgaacac gatgcggtct tcggcaagtt
     3121 tcctgccgac cgacgaaata ccctggtttt tggcaatttt aattcggtat gccctgccgt
     3181 tgtctttagg gacgaaaagc agcgcggcga aaacggctgc cgatacggtc aaaaaaacgg
     3241 cagtccattt caacaatttt ctcaacatgg taggattccc aatatcggaa tacatcttaa
     3301 aattcgggcg acagtataac ccaaattacc ccataagaca gaaaggacat catggacaat
     3361 cccgctacgg caccctggca ggacggttgg ctgcaaagcg tgcgccacat tccgtcgccg
     3421 aatttcagcc cgagggaaac gggggaaacg gtttccctga tcgtgttgca caacatttcg
     3481 ctgccgccgt tcgaatacgg cacggatgcg gtggaaaagc tgtttgccaa ccggctcgac
     3541 cccgacggac atccgttctt cagcctgata cacactttgc gcgtatccag ccatttttta
     3601 atcaaacgcg acggcgaaac ggtacagttc gtttcctgcg acaatatggc ataccatgcc
     3661 ggcgtatcct cgtttcgcgg acgggaaaaa tgcaacgcat tttccatcgg catcgaactg
     3721 gaaggctgcg atttcgaacc ctttaccgaa gcgcaatacc gttcgctcga agccttgttg
     3781 gacgcaatct gccgccgcta ccccatcacg gcggtaacgg ggcaccaaga catcgcgccc
     3841 ggccgcaaaa ccgaccccgg tcattttttc gactggcggc ggatacgggg gaaagggttt
     3901 cccgtggaca gaaatgccgt ctgaaaacca cagattttag acggcatttc ggaaaatttc
     3961 cgcttatttc gacacactgc tgtcagaccc tgcaattttc gttataattc aaacgttata
     4021 accggccgtt ccgtcagact gccggaaacg caagcccgat ttaaccgcag tacccgcact
     4081 ttgcgcatcc tgcatcccga aatttaaagt gattgccatg atttacatcg tactgttcct
     4141 cgccgccgtc ctcgccgttg tcgcctacaa tatgtatcag gaaaaccaat accgcaaaaa
     4201 agtgcgcgac cagttcgggc actccgacaa agatgccctg ctcaacagca aaaccagcca
     4261 tgtccgcgac ggcaaaccgt ccggcgggtc agtcatgatg ccgaaacccc aaccggcggt
     4321 caaaaaaacg gcaaaactcc aagaccctgc tatgcgcaac ctgcaagaac aggatgccgt
     4381 ctacatcgcc aagcagaaac aggcaaaagc ctccccgttc aaaaccgaaa tcgaaaccgc
     4441 cttggaagaa agcggcatta tcggcaactc cgcccacacc gtttccgaac cccaaaccgg
     4501 acattccgca ccgaaacctg ccgacgcgcc ggcaaaaccc gttcccgttc cgcaaacgcc
     4561 ggcaaaaccg ctgattacgc tcaaagagct gtcaaaagtc gaactgccgt ggtttgacgt
     4621 gcgcttcgat ttcatctcct atatcgcgct gaccgaagcc aaagaactgc acgcactgcc
     4681 gcgcctttcc aaccgctgcc gctaccagat tgtcggctgc accatggacg accatttcca
     4741 gattgccgaa cccatcccgg gcatccgcta tcaggcattt atcgtgggta ttcaggcagt
     4801 cagccgcaac ggacttgcct cgcaggaaga actctccgca ttcaaccgcc aggtggacgc
     4861 attcgcacaa agcatgggcg gtcagacgct gcacaccgac cttgccgcct ttatcgaagt
     4921 ggcttccgca ctggacgcat tctgcgcgcg cgtcgaccag accatcgcca tccatttggt
     4981 ttccccgacc agcatcagcg gcgtagaact gcgttccgcc gtaacgggcg tgggtttcgt
     5041 cctggaagac gacggcgcgt tccactatac cgacacgtcg ggctcgacca tgttctccat
     5101 ctgctcgctc aacaacgagc cgtttaccaa cgcccttttg gacaaccagt cctacaaagg
     5161 cttcagtatg ctgctcgaca tcccgcactc tccggcaggc gaaaaaacct tcgacgattt
     5221 gtttatggat ttggcggtac gcctgtccgg ccagttgaac ctgaatctgg tcaacgacaa
     5281 aatggaagaa gtttcgaccc aatggctcaa agacgtgcgc acttatgtat tggctcgtca
     5341 gtccgagatg ctcaaagtcg gtatcgaacc gggcggcaaa accgccctgc gcctgttctc
     5401 ctaaaatcga atgcaatcaa agcggatatg tcgttacggc atatccgctt tttttcgggt
     5461 aaaattcagc tgttttcaac ctatcatttt tcagacgacc tttgcccgtt tcatcccgta
     5521 tcagacaaag gtcgtctgaa aaccttctct catgaatcca aactcaaaac ataacactaa
     5581 ctttaccaat cttcttaaac cgtctgatag tgatataaaa caatttgccg cacaacacat
     5641 ccgccacctc accgacctcc ttaaccgcta cgcctacgaa tactacaccc tcgacgcgcc
     5701 cagcgtaccc gatgccgaat acgaccgcct gttccgcgaa ctcgaagccc tcgagctgaa
     5761 ccatcccaaa ttcaaactgc ccgacagccc gacccagcgc gtcggcggcg agcctttggc
     5821 gggatttgcc gaagtacgcc acgaagtgcc gatgctgtcg ctgaccaacg ctttttcccc
     5881 gcaagatgaa aacggcgtgt tcgaccatgc cgaaatgtac gccttcgacc aacgcgtgcg
     5941 cgacggcttg gacggcggca aacccgaata cgttatcgaa cccaaattcg acggcctcgc
     6001 catcagcctg ctctaccgcg acggcgtatt ggtgcaggcg gcaacgcgcg gcgacggcac
     6061 gacgggcgaa gacgttaccc aaaacatcaa aaccgtatcc aacatcccct tgcggctgca
     6121 cggcgaaaat acgcccgaac tcatcgaagt acgcggcgaa gtgctgatgc aaaaagccga
     6181 ttttgccgcc ctcaataaaa gacaagccga aaacgggcaa aaaccctttg ccaatccgcg
     6241 caacgccgct gccggcagcc tgcgccaact cgattcgcgc atcaccgcgc aacgcaaact
     6301 gcactttttc ccctactccg tcgcccgccg gcaaggcggt ttcgtcgcgg aagaacacat
     6361 ccaagaactc gcctatttcc aaaaactcgg cttcagcctg cctaacggca atttcggctg
     6421 cttcaaaaat atcgacgaag tattggcgtt ttatgaacaa atgcagcaga aacgccccga
     6481 actgccctat gaaatcgacg gcatggtcgt caaagtcaac agcttggcgc aacagcacga
     6541 actcggcttc atctcccgcg cgccgcgttg ggcggttgcc cacaaattcc ctgccgaaga
     6601 agccctgacc attgtcgaag cgattgacgt gcaaatcggc aggacgggcg cggtaacgcc
     6661 ggttgcccga ttacagcccg tattcgtcgg tggcgtaact gttaccaacg ccaccctgca
     6721 caatcaggac gaagtatcgc gcaaagacgt tcgcgtcggc gataccgtcg tcgtgcgccg
     6781 cgctggagac gtgattcccg aagtcgtgcg tgtgattttt gaacgccgcc cgatgcagga
     6841 aaccgccgtt gctgtttcag acggcatcgg gcatcggcag gacgatttgt ttgccgaagc
     6901 accggctgca aaccaaaccc aatccgttcc gctctacaag ccctaccgcc tgccgaccca
     6961 ttgccccatc tgccgcagcg aaatcgaacg cgaagaaggt gaagccgtcg cccgatgcag
     7021 cggcggcatg ctttgtcagg cacaacgcgc gcaaggctta atccacttcg cctcgcgcaa
     7081 agcgatggac atcgacggct tgggtgaaaa acaaatcgaa cagcttgtcg cccaagacct
     7141 cgtccgccac ttcgccgacc tctaccgcct cgatattccg accctgcaaa aaatgaagga
     7201 aacggcggac aaaaccgttg ccgaatcgga tcaaatgccg tctgaaggca gttcggtcgg
     7261 cgcgtcgggc aaacataaaa aacaaccgac caagtgggcg gaaaacatcc tcgcaggcat
     7321 agaatccggc aaaacgcccg aactcgcgcg cttcctgttc gcactcggca tccgccacgt
     7381 cggcgaacgc accgccaaaa cgctggcgca ggcattcggc acattggaac gcgtccgccg
     7441 cgcccccgaa cccgtcctcg cctgcctgcc cgacatcggt acggtagtgg cgcattccat
     7501 tgcccacttc ttcgcccaag ccgaacagca ggcgatgata gacgaactgc tcgccgcagg
     7561 cgttgccccg caaacccaag ccgttaccat cccgcccgcc cgccacgccg aaccgcaacg
     7621 ctggatcgcc cgcctgcccg acttcaaaat tagcgaaaac aaagcccaag ccttatggga
     7681 actcgctggt aaaaacatag aaggtctaca aaacgacaaa gccctccccg ccgactggca
     7741 agcatggcgc agcgaaccac aaaacgccgc cctgctcgaa aacctaaaaa ccttcttcgc
     7801 gcaaatgccg tctgaagacg aggcggcgca aggttcagac ggcatcaata aagccgtagc
     7861 aggcaaaacc tttgtattaa ccggcaccct gcccacgctc aaacgcgacc aagcccaatc
     7921 cctaatcgaa gccgcaggcg gcaaagtttc cggcagcgtg tccaaaaaaa ccgactacgt
     7981 cgtcgccgga gaagccgcgg gcagcaagct ggaaaaagcc aatgccttgg gcgtttccgt
     8041 cctcagcgaa gccgaactgc ttaccctgct cggctgaacc tatgccgtct gaaccgcctt
     8101 cagacggcat tgtccacttt tccgaaccac accatgcaca ccatttcctt tccaaaccgc
     8161 acccgactca ccgccctgcc gcccctgtcg ctttacatcc acatcccgtg gtgcatcaaa
     8221 aaatgcccgt attgcgactt taattcccac agcctgaaaa acggattgcc cgaagccgcc
     8281 tatatcgacg cgctgctgac cgacttgcag ctcgaattgc ccaatatttg gggcaggccg
     8341 gtggaaacga tctttttcgg cggcggtacg cccagcctgt ttcaggcgga atcgattgac
     8401 cgtttattga gcggcgtgcg ttcgctgttg cgcttgcagc cggaagcgga aattaccttg
     8461 gaagccaatc cggggacatt tgaaatcgag aagtttcaag gatttaaaga cgcaggcatc
     8521 acgcggcttt ctattggtgt acagagtttc aacgacgata tgctctcaag gctggggcgc
     8581 gtccacaacg gcaaggaagc cttaaccgct atcgataccg ccttgaaatt atttgataaa
     8641 gtcaatatcg acttgatgta tgccctgccg aaccaaaccg ttcagacggc attggacgac
     8701 gtacaaaccg ctatcgctac gggcgcgacc cacatcagcg cgtatcatct gacgatggaa
     8761 ccgaacacgc cgttcggtca tacgccgccg aaaggtttgc cgcaagacga agccgccctc
     8821 gacatcgaag acgcggtaca cggcgcgctg gaaagcgcgg gttttgtcca ctacgaaaca
     8881 tcggcttttg cgaaaccagc catgcagtgc cgccacaatt tgaactactg gcagttcggc
     8941 gattatttag gcataggcgc gggcgcgcac ggcaaaattt cctatcccga ccgcatcgag
     9001 cgcaccgtcc gccgccgcca ccccaacgac tacctcgcct taatgcaaaa ccgaccgagc
     9061 gaagccgtcg aacgcaaaac cgtcgccgcc gaagatttgc cgtttgagtt catgatgaac
     9121 gccctgcgcc tgaccgacgg cgtacccgcc gcgatgttgc aggaacgcac gggcgtaccg
     9181 agtgccaaaa tcatggcgca aatcgaaaca gcaaggcaaa aaggcctgct ggaaaccgac
     9241 cccgccgtat tccgcccgac cgaaaaagga cgcttgtttt taaacgattt gctgcaatg
//
LOCUS       DAXHNP010000079         9206 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.079, whole genome shotgun sequence.
ACCESSION   DAXHNP010000079 DAXHNP010000000
VERSION     DAXHNP010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9206
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.079"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            90..299
                     /locus_tag="ACFM5C_001313"
     CDS             90..299
                     /locus_tag="ACFM5C_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFC6069007.1"
                     /translation="MPYVNIKVTGGKEAPTAAQKAELIGGVTELLARVLGKNPETTVV
                     VIDEVDTDNWGIGGKSVSERRKEGR"
     gene            388..1602
                     /locus_tag="ACFM5C_001314"
     CDS             388..1602
                     /locus_tag="ACFM5C_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HFC6069008.1"
                     /translation="MDKFPKSAKLDHVCYDIRGPVHKKALQLEEEGNKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTSQGYCDSKGLYSARKAIVHYYQTKGLRDITVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPAPDYPLWTAAATLAGGTVRHYLCDEENGWFPNLAD
                     MEAKITPKTKAIVVINPNNPTGAVYSREILLEIAELARKHGLIIFADEIYDKILYDGA
                     VHHHIAALAPDLLTVTFNGLSKAYRVAGFRQGWMVLNGPKHHAKGYIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNRAWELVNQIPGVSCVKPMGAMYM
                     FPKIDTEMYRIHDDMKFVYDLLVREKVLLVQGTGFNWIKPDHFRIVTLPYVHQIEEAM
                     GRLARFLQTYRQ"
     gene            complement(1689..4268)
                     /gene="clpB"
                     /locus_tag="ACFM5C_001315"
     CDS             complement(1689..4268)
                     /gene="clpB"
                     /locus_tag="ACFM5C_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HFC6069009.1"
                     /translation="MRYDKLTAKFQQALAEAQSLALAADGSYLEAGFVLKALLDDQNS
                     GAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGDIMPSRELQAVLNLMDKAATKRG
                     DAYIASELFLLALVQQNDATGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
                     LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIF
                     IDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAID
                     LIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEING
                     LQKEYADLDEIWKAEKAISDGAANIKKQIDEVKIKIEQAKRQGDLALASKLMYEDLEH
                     LEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGERDKLLKM
                     EEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAG
                     FLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDE
                     VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMGTQDYEAV
                     KEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLTV
                     SDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEADGDRL
                     KFA"
     gene            4529..5539
                     /gene="trpS"
                     /locus_tag="ACFM5C_001316"
     CDS             4529..5539
                     /gene="trpS"
                     /locus_tag="ACFM5C_001316"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFC6069010.1"
                     /translation="MSKKRVLTGVTTTGIPHLGNYVGAIRPAVRAAQNPDTESFLFLA
                     DYHGIIKCHEPEMIHQSTQAVAATWLACGLDPERTTFYRQSDIPEVMELNWILTCITA
                     KGLMNRAHAYKAAVQANAENGQEDPDFGVEMGLFSYPILMTADILMFNANEVPVGRDQ
                     IQHVEMARDIAGRFNHRFRELFTLPEVKIDENVELLVGLDGRKMSKSYGNTIPLWEND
                     KKTQKSVNKIITNMKEPGEPKQPDESPLFEIYKAFSTPSETVEFTKMLADGLAWGEAK
                     KLLAAKINAELAEPRERYNELTADPSQIEEILQAGAQKARKEARELLDKVRDAVGIRP
                     LK"
     gene            5545..5886
                     /locus_tag="ACFM5C_001317"
     CDS             5545..5886
                     /locus_tag="ACFM5C_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069011.1"
                     /translation="MPSEPLKGLPEQNVVRLTGKHPNDLEAVVGKCMETDGKGAPSGW
                     AANGVCHTLFAKLVGNIAEDGGKLTDYLISHSALQPYQAGKSGYAAVQNGRYVLEIDS
                     EGAFYFRRRHY"
     gene            6208..6531
                     /locus_tag="ACFM5C_001318"
     CDS             6208..6531
                     /locus_tag="ACFM5C_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069012.1"
                     /translation="MKKLLIAAMMAAALAACSQEAKQEVKEAVQAVESDVKDTAASAA
                     ESAASAVEEAKDQVKDAAADAKASAEEAVTEAKEAVTEAAKDTLNKAADATQEAADKM
                     KDAAK"
     gene            complement(6740..8248)
                     /gene="ppx"
                     /locus_tag="ACFM5C_001319"
     CDS             complement(6740..8248)
                     /gene="ppx"
                     /locus_tag="ACFM5C_001319"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006798 - polyphosphate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HFC6069013.1"
                     /translation="MTTHPANVLASVDLGSNSFRLQICENNNGQLKVIDSFKQMVRFA
                     AGLDEQKNLSAASQEQALDCLAKFGERLRGFRPEQVRAVATNTFRVAKNIADFLPKAE
                     AALGFPIEIIAGREEARLIYTGVIHTLPPGGGKMLVIDIGGGSTEFVIGSTLNPDITE
                     SLPLGCVTYSLRFFQNKITAKDFQSAISAARNEIQRISKNMRREGWDFAVGTSGSAKS
                     IRDVLAAEMPQEADITYKGMRALAERIIEAGSVKKAKFENLKPERIEVFAGGLAVMMA
                     AFEEMKLDRMTVTEAALRDGVFYDLIGRGLNEDMRGQTVAEFQHRYHVSLNQAKRTAE
                     TAQTFMDSLCHAKNVTVQELALWQQYLGRAAALHEIGLDIAHTGYHKHSAYILENADM
                     PGFSRKEQTILAQLVIGHRGDMKKMSGIIGTNEMLWYAVLSLRLAALFCRSRQDLSFP
                     KNMQLRTDTESCGFILRIDREWLERHPLIADALEYESVQWQKINMPFKVEAV"
     gene            complement(8364..9206)
                     /locus_tag="ACFM5C_001320"
                     /pseudo
     CDS             complement(8364..9206)
                     /locus_tag="ACFM5C_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714481.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
BASE COUNT         2111 a         2397 c         2437 g         2261 t
ORIGIN      
        1 cgatttgaat ttttcagaaa atgaagcgga cgtttgggcg gaggcaactt gtttgataag
       61 atagcaatat tttaaaacgg agaaagatca tgccttatgt caatattaaa gtaaccggcg
      121 gcaaggaagc accgactgcc gcgcaaaaag cggaactgat cggcggcgta accgaattgc
      181 tggcacgcgt gctgggcaaa aatcccgaaa caacggttgt cgtgattgac gaagtggata
      241 ccgataactg gggaataggc ggcaaaagcg tcagcgaacg gcgcaaagag ggcaggtaaa
      301 aagcctgaaa atctcggttt gatgctttaa attccgcgtg aaaaagagta cattcccacc
      361 cattgcccaa aatttacgga acacatcatg gataaatttc ccaagtctgc aaagctcgat
      421 cacgtctgtt acgacatacg cgggccggtt cacaaaaaag cccttcagtt ggaagaggag
      481 ggcaataaaa tccttaaact caatatcggc aaccctgcgc cgttcggctt tgaagcccct
      541 gatgaaatct tggtcgatgt catccgcaac ctgccgactt cgcaaggcta ttgcgattct
      601 aaagggctgt attccgcccg caaagccatt gttcactact atcagaccaa aggtttgcgc
      661 gatattacgg taaacgatgt ctatatcggc aacggcgtgt ccgagctgat tacgatgtct
      721 atgcaggcat tgctcaacga cggcgacgaa atcctgattc ccgcgcccga ctaccctttg
      781 tggacggcgg cggcaacgct tgcgggcggt acggtacgcc attatctgtg cgacgaagaa
      841 aacggctggt tccccaacct tgccgatatg gaagccaaaa tcacgcccaa aaccaaagcc
      901 atcgtcgtca tcaatcccaa taatccgaca ggcgcggtgt acagcaggga aatcctgttg
      961 gaaatcgccg aactggcgcg caagcacggt ttgattattt tcgccgacga gatttacgat
     1021 aaaatccttt atgacggcgc ggttcaccac cacatcgccg cgcttgcccc cgaccttttg
     1081 acggtaacgt tcaacggttt gtccaaagcc taccgcgtcg ccggcttccg ccaaggctgg
     1141 atggtgctca acgggccgaa acatcatgca aaaggttaca tcgagggttt ggatatgctc
     1201 tcgtctatgc gcctgtgtgc caatacgccg atgcagcacg cgattcagac ggcattgggc
     1261 ggctatcaga gcatcaacga attcattttg cccggcggac ggcttttgga acagcgtaac
     1321 agggcgtggg aattggtcaa tcagataccc ggcgtatcct gcgtcaaacc gatgggcgcg
     1381 atgtatatgt tcccaaaaat cgataccgaa atgtaccgta tccacgatga catgaaattc
     1441 gtttacgatt tgctggtgcg cgaaaaagtc ttgctggtac agggaacggg gtttaattgg
     1501 attaaacctg accatttccg cattgtcacg ctgccttacg tccatcagat tgaagaggcg
     1561 atgggcaggt tggcaagatt cctgcaaacc taccgccaat aaggggacgg tttgtctgcc
     1621 gaggataaaa aatgccgtct gaaacggaga ttcccgtttc agacggcatt ttcaacagca
     1681 ggaacgaatc aggcaaattt cagtctgtcg ccgtcggctt ctaccctgat ttcgctttcg
     1741 ggcgcatagt ttccggcaag cagggctttt gccagcgggt tttcgatttc cgactggatg
     1801 gcgcgtttga gcggacgtgc gccgtaaatc gggtcgaaac cggctttggc gatgatgtcc
     1861 agagcggcat cggaaacagt caggcggagg ttttgttttt ccaaacgttt ttccaagcct
     1921 ttgagctgga ttttcgcaat gttgcggata ttatcctgat ccagtccgtg gaacacgacc
     1981 acttcgtcga tgcggttgat catttcagga cggaaatgct ctttcacatc ctccatcaca
     2041 acttctttca cggcttcgta gtcctgcgtg cccatttgtt ggatgtgctg gctgccaatg
     2101 ttggaagtca tcacaatcac ggtgttttta aaatctaccg tcctgccttg tccgtcggtc
     2161 aaacgaccgt catccaaaac ttgcagcagg atattgaaca cgtcgggatg ggctttttcc
     2221 acttcgtcca aaagaatcac gctgtacggt ttgcggcgga cttgctcagt caggtagccg
     2281 ccttcttcgt agccgacata gcccggaggc gcgccgatta agcgggcaac ggcgtgtttt
     2341 tccatatatt cggacatatc gatacgaatc agatgatctt cactgtcaaa caggaagcct
     2401 gccaatgcct tacacaattc ggtcttaccc acgccggtcg ggcctaagaa caggaagctg
     2461 ccgtaaggtt tgttcggatc ggcaagaccg gaacggctgc ggcggatagc gtcggacacg
     2521 gcacgcacgg cttcatcttg accgaccacg cggcggtgca atacttcttc catcttcagc
     2581 agtttgtcgc gttcgccttc catcattttg gacacgggaa taccggtcat acgggaaaca
     2641 acttctgcga tttcctccgc gccgacatta ttacgcaaga gtttgtttgc cggttttgtg
     2701 ctgtccgtat ctgcccgttc ggcggctgca cgctgttttt ccaaatgctc caaatcttca
     2761 tacatcaatt ttgaagccag tgccaaatcg ccttgccgtt ttgcctgttc gattttaatt
     2821 ttgacttcgt caatttgttt cttaatatta gcagcaccgt ctgaaattgc tttttcggct
     2881 ttccagattt cgtctaaatc ggcgtattct ttttgcagac cgttgatttc ctcgtctatc
     2941 agttccaaac gttttttgct ggcatcgtct ttttcttttt caacgtgtgc cttttccatc
     3001 cgaagctgaa tcagacggcg gtcgattttg tccattgctt ccggcttggt ttctttttcc
     3061 atcttgacac ggctggcggc ttcatcaatc aaatcaatcg ctttgtcggg caggaagcgg
     3121 tcggtgatgt agcggtcgct caactccgct gcggcaacga tagcagggtc ggtaatatcg
     3181 ataccgtggt ggatttcata acgctcctgc aaaccgcgca agatggcgat ggtgtcttcc
     3241 acgctgggct cgccgaccaa tactttttgg aagcggcgtt cgagtgccgc gtctttttcg
     3301 atgtattggc ggtattcgtc caaggtggtc gcgccgatac agtgcagttc gccccgcgcc
     3361 aaggccggtt tcagcatatt gcccgcgtcc atcgcgccgt cggttttgcc cgcgccgacc
     3421 aaagtatgga tttcatcaat gaaaatcaga gtgttgccgt cgtctttcgc caaatcgttc
     3481 aacacgcctt tcaagcgttc ttcaaattcg ccacggtatt tcgcgccggc aatcaatgcc
     3541 gccaagtcca gaaccaaaag gcgtttgttg cgcagggatt cgggtacttc gccgttgacg
     3601 atgcgttgcg ccaagccttc gacaatggca gttttaccca cgcccggttc gccaatcagc
     3661 acggggttgt ttttggtgcg gcgttgcaat acctgaattg cacggcggat ttcgtcgtca
     3721 cgaccgataa cggggtcgag cttaccgtcg cgggcgcgtt gggtcaaatc gagcgtatat
     3781 tttttcagcg catcgcgttg gtcttcggca ttggcatcgt tcacgttttg tcctcctcgt
     3841 accgcatcga ttgcggcatt aatgttttgt tcggtcgcgc cggcttcttt caaaattttg
     3901 ccggttgcat cgttctgctg caccaaggcg agcaggaaaa gttcgctggc gatataggca
     3961 tcgccgcgtt tggttgctgc tttgtccatc aggttcaaca ccgcctgcaa ttcgcggctg
     4021 ggcataatgt cgccgccctg tccggatact ttcggcaggc tgttcaaatg ctgctgcaaa
     4081 cgctgtttca cctgcggcac gttcacgccc gcatgagcca agagcgcggc agcaccgctg
     4141 ttttggtcgt caagcagggc tttcagcaca aagcccgctt ccagatagct gccgtccgca
     4201 gccaacgcca aactctgagc ttctgcaagg gcctgttgga atttggcggt taatttgtcg
     4261 tatcgcattt ttgtttcctt ttcaaaatgt ccgctgtcga agcctatatg tgcataattg
     4321 tggataactc aagttctgtt ttctgttttt ctatatttaa ttcgatatat cattgaattt
     4381 aaagtatata aaaatgtata ataatgtgta taactatatc ttcttaatat ggaaaagtct
     4441 gttgtcggct ggatgtaggt ggcaaatcgg gtataatcgg cgcatctttt tccctttcag
     4501 acggcattga tgccgcaagg acatttttat gagcaaaaaa cgagttctga ccggcgtaac
     4561 caccaccggc atcccgcatc tgggcaacta cgtcggtgct atccgccccg ccgtccgcgc
     4621 ggcgcaaaac cctgataccg aatccttcct cttcctcgcc gattaccacg gtatcatcaa
     4681 atgccacgag ccggagatga ttcaccaatc cacccaagcc gttgccgcca cttggcttgc
     4741 ctgcggactc gaccccgagc gcaccacctt ctaccgccaa agcgacattc ccgaagtgat
     4801 ggaattgaac tggattctga cctgcatcac cgccaagggt ttgatgaacc gcgcccacgc
     4861 ctacaaagcc gccgtgcagg caaatgcgga aaacgggcag gaagaccccg atttcggcgt
     4921 ggaaatgggt ttgttcagtt atccgattct gatgactgcc gatattctga tgttcaacgc
     4981 caacgaagtc cccgtcgggc gcgaccaaat ccaacacgtc gaaatggcgc gcgacatcgc
     5041 cggccgcttc aatcaccgct tccgagaact cttcaccctg cccgaagtga aaatcgacga
     5101 aaacgtcgaa ctcttggtcg gtttggacgg acgcaaaatg tccaaatcct acggcaacac
     5161 cattccgctt tgggaaaacg acaaaaaaac ccaaaaatcg gtcaacaaaa tcatcaccaa
     5221 tatgaaagag ccgggcgagc cgaaacagcc cgacgaaagc ccattgtttg aaatctacaa
     5281 agccttctcc acgccgtctg aaacggtgga atttacgaaa atgcttgccg acggcctggc
     5341 ttggggcgag gcaaaaaaac ttttggcggc gaaaatcaac gccgaactcg ccgaaccgcg
     5401 cgaacgctac aacgagctga ccgccgaccc ttcgcaaatc gaagagattt tacaggcagg
     5461 tgcgcaaaaa gcgcgtaaag aagcacgcga attgttggac aaagtacgcg atgcggtcgg
     5521 catccgcccg ttgaaataaa cccgatgccg tccgaacctc ttaaaggctt gccggaacaa
     5581 aacgtcgtcc ggctgaccgg caagcatccc aacgacttgg aagccgtcgt cggcaaatgt
     5641 atggaaaccg acggaaaggg cgcgccttcg ggctgggcgg caaacggcgt gtgccatacc
     5701 ttgtttgcca aactggtggg caatatcgcc gaagacggcg gcaaactgac ggattacctg
     5761 atttcgcatt ccgccctgca accctatcag gcaggcaaaa gcggctatgc cgccgtgcag
     5821 aacggacgct atgtgctgga aatcgacagc gaaggggcgt tttatttccg ccgccgccat
     5881 tattgaggta ttcggacatc ccggaatata tttgggtttt tcaaaccctg cgggaaaaaa
     5941 gtccgcaccg tcgggaaact caaaaggagg gggatatgtg ttacaatttt ccgaactgtt
     6001 ttcataaaat agttttcgga cgtgtttcaa tatggcattg atgccgcctt attgttcgag
     6061 aaaaaaaacc tttatattta aatataatgg gttttaacta aacgggaaac cgttttctct
     6121 ccggccgatg ggcaaaatca gccgattgat ggaacacggt ccgattttta agcaaaacct
     6181 taatcaacaa ctcaagaagg ataagacatg aaaaaattat tgattgccgc aatgatggcg
     6241 gctgccttgg cagcttgttc gcaagaagcc aaacaggagg ttaaggaagc ggttcaagcc
     6301 gttgagtccg atgttaaaga cactgcggct tctgccgccg agtctgccgc ttctgccgtc
     6361 gaagaagcga aagaccaagt caaagatgct gcggctgatg caaaggcaag tgccgaggaa
     6421 gctgtaactg aagccaaaga agctgtaact gaagcagcta aagatacttt gaacaaagct
     6481 gccgacgcga ctcaggaagc ggcagacaaa atgaaagatg ccgccaaata atttgttgcc
     6541 ttggcaaaaa tgatgggatg ccgcctgccg gcaacccaaa cgaaaccgcc tgaagatttt
     6601 caggcggttt ttgggttatg tgccccttgt tttttacgcc tgcatgaccg ttccgagcag
     6661 atgtgccgcg catatcggga tgttgcggac aggcaaatgc cgtctggaca gggtttggac
     6721 ggcatttgtt ccgtaaggtt cagacggcct cgactttaaa cggcatattg attttttgcc
     6781 attggacgct ttcatattcc aatgcgtcgg caatcagggg gtggcgttcc agccattccc
     6841 tgtcaatacg caggatgaag ccgcagcttt ccgtatccgt gcgcaactgc atgtttttcg
     6901 ggaaagacag gtcttggcgc gaacggcaga acagtgcggc aaggcgcagc gacaaaacgg
     6961 cataccacaa catttcgttg gtgccgatga tgccgctcat ttttttcata tcgccgcgat
     7021 gaccgatgac cagttgggca agtatggtct gttctttgcg tgagaaaccc ggcatatcgg
     7081 cgttttcgag gatgtaggcg gaatgcttgt gatagccggt gtgggcgatg tccaaaccga
     7141 tttcgtgcag cgcggcggcg cgtccgagat actgttgcca caaggcaagc tcttgaaccg
     7201 taacattttt agcgtggcag aggctgtcca taaaggtttg cgcggtctcg gcggtgcgtt
     7261 tcgcctgatt gaggctgacg tggtagcggt gttggaactc ggcaaccgtt tgtccgcgca
     7321 tatcttcgtt taaaccgcgc ccgatcaaat cgtaaaacac gccgtcgcgc agggcggctt
     7381 cggttacggt catcctgtcg agtttcattt cttcaaacgc cgccatcatc acggcaagtc
     7441 cgccggcaaa aacttcgatg cgttccggtt tcaggttttc aaatttggcc tttttgaccg
     7501 aaccggcttc gatgatgcgt tcggcgaggg cgcgcatgcc tttgtaggta atgtccgcct
     7561 cttggggcat ttcggcggca agcacgtcgc ggatggattt tgccgaaccc gatgtgccga
     7621 cggcgaaatc ccaaccttcg cgcctcatat ttttgctgat gcgctggatt tcgttgcggg
     7681 cggcggaaat ggcagattgg aagtctttgg cggtgatttt gttttggaag aagcgcaggc
     7741 tgtaggttac gcagcccaag ggcaggcttt cagtaatgtc gggattcagc gtcgagccga
     7801 tgacaaattc tgtcgaaccg ccgccgatgt cgataaccag cattttgccg ccgcccgggg
     7861 ggagggtgtg gatcacgccg gtataaatca gccgcgcctc ttcgcgcccg gcgatgattt
     7921 cgatggggaa acccagtgcc gcttcggcct tgggaaggaa atctgcgatg tttttggcga
     7981 cgcggaatgt attggttgcc acggcgcgca cctgttcagg gcggaagccg cgcaggcgtt
     8041 cgccgaattt tgccaggcag tccaaagcct gttcttggga agcggcactc aggtttttct
     8101 gttcgtccag accggcggcg aagcgcacca tctgtttgaa cgaatcgata acttttaatt
     8161 gtccgttgtt gttttcgcaa atctggaggc ggaaactgtt ggaacccaaa tcgacggagg
     8221 cgaggacgtt tgcgggatgg gtggtcatgg tggataccgg tgggggaaaa acgcaatgtt
     8281 actctgacgg cgcaggcgtt gacaataaat gatgcggcgg tttttgattc tgcccacgga
     8341 tgttgccgac ggcatttttg cgcttatttg aaatcctttt ccacgctcat gaaaatctgc
     8401 gtgtttttgc gtgtgtaaaa acttttcata ttgctgtcga ttttcagata gcggaaattg
     8461 agttgcggcg taaagccctt ccaagagatt ttgtcgtgcc acaacgacag gtttgcctga
     8521 tattcgtggt ctttgcgcgg gaagcggtac acaatggtcc cgggtgcgtc aaacatcctg
     8581 cgggtatagc gcaggtttgc ccgcagaccc aagcccgccg tcgaacgttt tgactgcgcc
     8641 gacacgcaaa cccttgcgga cggaagcctg ttccgcctct ttcgtcatgt tgtgcgacca
     8701 gtccgcaccg ccgtaaagca gccagtcttt cggcgcggaa tacatcagcg tcgcgcccgc
     8761 cagcggcata tggctgtcgt atcgggcggc ggtgcggtct tcctgataac gcttccacat
     8821 attgcccacg ttcagcgtca gccgccagcg ttcgctcaag cgtcgggaga aatcggcatt
     8881 gaagccgccg acgaaattgt atcggctgcc gcctaagagg ttttgcccga taaacggcac
     8941 gatgccgaac gagcgcgtta ccgaacgatt tttatagccg agcgacaggc gcaggcactg
     9001 ttcgctgaaa tctttgttat cccaataatg cacgccgccg ccgctgatgc cgccgtagag
     9061 gaaatgatgc ccgcccgcat tgatttcgcg cgacacgcct aagccctagc gcaaaccgtg
     9121 tgccttttgc ggcaggctgt cggcggtttt cgtccagctt ctgcccgcaa attcaatcgt
     9181 ttttttggac gaagcgttgt ttatag
//
LOCUS       DAXHNP010000080         9195 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.080, whole genome shotgun sequence.
ACCESSION   DAXHNP010000080 DAXHNP010000000
VERSION     DAXHNP010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9195
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.080"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(86..280)
                     /locus_tag="ACFM5C_001321"
     CDS             complement(86..280)
                     /locus_tag="ACFM5C_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HFC6069014.1"
                     /translation="MKHKLASWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTK
                     LQFQDYCRKRRCGANGGRCC"
     gene            complement(270..2351)
                     /locus_tag="ACFM5C_001322"
     CDS             complement(270..2351)
                     /locus_tag="ACFM5C_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFC6069015.1"
                     /translation="MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISV
                     YCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPG
                     VIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKI
                     GEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLT
                     PRDYLSTFLKIGTIAALALGIVIVNPALQMPAVTHFIDGSGPVFSGALFPFLFITIAC
                     GAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAM
                     NSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMA
                     HIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTD
                     SIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLI
                     KMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEILAP
                     AKDIGEMAQIIFNDKINAGLTILFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYR
                     DGKQPEAQSEA"
     gene            2828..3208
                     /locus_tag="ACFM5C_001323"
     CDS             2828..3208
                     /locus_tag="ACFM5C_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HFC6069016.1"
                     /translation="MNIRFFALTVPVLSLAACAVPEAYDDGGRGHMPPVQNQAGTDDF
                     RAFSCENGLSVRVRHLDSGKVALRLDGRRAVLSSDVAASGERYTAEHGLFGNATEWHQ
                     KGGEAFFGFTDAYGNSVETSCRAR"
     gene            complement(3341..3835)
                     /locus_tag="ACFM5C_001324"
     CDS             complement(3341..3835)
                     /locus_tag="ACFM5C_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contact-dependent growth inhibition system
                     immunity protein"
                     /protein_id="HFC6069017.1"
                     /translation="MIFKQNQNYWTVFYTNEEALIVQTCSGLGLTAIDHLYPPHILPL
                     DTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKTRR
                     ALFKNMMSVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLKLAL
                     SRCR"
     gene            3972..4136
                     /locus_tag="ACFM5C_001325"
     CDS             3972..4136
                     /locus_tag="ACFM5C_001325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069018.1"
                     /translation="MYKKVFFLNDRDCARAIFRHRPDVALPDRMLQTASEGFAVLEYE
                     DDNVREIDGI"
     gene            4169..5602
                     /locus_tag="ACFM5C_001326"
     CDS             4169..5602
                     /locus_tag="ACFM5C_001326"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HFC6069019.1"
                     /translation="MNEYYQLIKHPDISLSPISDGIGVGNPATGEILAYVRNTGSDKL
                     KNLIQKAAAAQKLWAAKTALERADILWRWYFLVKENKEALARLMTMEQGKSLTESRGE
                     IDYAASFVRWFAEEARRIDGDVLTSVKASQKLVVLKQPVGVTAAITPWNFPSAMIARK
                     AAPALAVGCAMIIKPASLTPLSAYALASLAYEAGIPQDLLPVVSGRASEIGREFATNP
                     IIRKISFTGSTEVGAKIFADSAADIKKLSLELGGNAPFIVFDDADLDKAVEGALASKF
                     RNSGQTCVCTNRVYAQSGIYDEFCRKLSEKVAELKLGNGLEDGVNQGPLIEEKAVEKV
                     EQHIADALAKGASCLTGGKRSALGGTFFEPTVLSGVTAQMAVAREETFGPLCPVFRFE
                     TEAEVIEAANNTEYGLAAYLFTADTARQWRVGEALEYGMVGINTGLISNEAAPFGGVK
                     RSGLGREGSKYGADEYLELKYLCMDVG"
     gene            5711..6499
                     /locus_tag="ACFM5C_001327"
     CDS             5711..6499
                     /locus_tag="ACFM5C_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimb protein"
                     /protein_id="HFC6069020.1"
                     /translation="MMENGKTVPRWRFALKSAGWHLLISLSVAGLAALLVFKVWYPYP
                     YAELTGGLSLYQLVVAVDIVCGPLLTLILASPKKKTKARMVDFSMVGIIQLAALVYGL
                     HSVSLARPVIEAFEKDRINVVTAAEVAVEDLHKAPEGLQSLSWFGIRRIALKEPEDAD
                     EKNKTLDLSLKGIEPSMRPDRWLPYSDKEAEKIRKHLKPLKVLADARKTTVADILKQA
                     GLAEGEELYYLPFTSSRQKEWIVITDKEGNTKGYAPIDGFIITP"
     gene            6867..8423
                     /locus_tag="ACFM5C_001328"
     CDS             6867..8423
                     /locus_tag="ACFM5C_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HFC6069021.1"
                     /translation="MDFSWLAEPHTWIGFATLLVLEVVLGIDNLVFVAILANKVQPAR
                     RDRARIIGLGLAVVIRIIMLAFMAHIITLTEPLFQIGGLAVSGKDMIMLAGGIFLLYK
                     ATTELHERLEGHNRFTVADNQKKHAPFWGVVAQILILDAVFSIDSVITAVAMVDHIVV
                     AMGAVVVAMAVMISASKLLTEFVDRHPTVVMLCLGFLLMIGFSLIAEAFHFHIPKGYL
                     YAAIGFSILIELFNQISQRNSRKNDYIGSSWRKRTAENVLGMMGIRESVLADAGGESG
                     DDAHFEENEKSMIRSVLTLAERPIMGVMIPRRDIERLDISQSREEQCAQLQNTPYSRL
                     LVVGKAGVDEPLGYINKKDLLSQLLETGGLDIQTALRQPLVLPDGTTALGALELFRQS
                     SADYALVVDEFGAVLGMVTMKDLLETIAGEFPEEFEREEEPAVQGNPDESLTVEGALE
                     YVELASQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE
                     RVKITKLPEE"
     gene            8440..9186
                     /gene="surE"
                     /locus_tag="ACFM5C_001329"
     CDS             8440..9186
                     /gene="surE"
                     /locus_tag="ACFM5C_001329"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFC6069022.1"
                     /translation="MNVLISNDDGYLSEGIAVLARVTAEFANVRVVAPERDRSGVSNS
                     LTLERPLQLKQAQNGFYYVNGTPTDCIHIGQSVFSDFQADFVFSGINRGANMGDDTLY
                     SGTVAAATEAYLMGIPAVAFSLNDASGRYWATAEKALWTLLAHFFKTPPQFPILWNIN
                     IPAVAPEDVRGIKIARLGRRHHGQNVIPARNPRGEQIYWIGPVGRVSDKEEGTDFGEC
                     GAGFITVTPLQIDLTAYPDMAETAVFWHAD"
BASE COUNT         2156 a         2311 c         2607 g         2121 t
ORIGIN      
        1 cgccttgtcc tgatttttgt taatccacta tattataaaa attccgtctg aagtggcgtt
       61 cagacggaat ttgtttcaag caggcttaac agcagcgtcc gccgtttgcg ccgcaacggc
      121 gcttgcggca gtagtcttga aattgcagct tggtcatcac gggggcgttg ggattatgtt
      181 tgcgctgctg tgcaacgtag ttttcataat caggcacgcc tgccatcaag tttgccgtca
      241 gcttgatggt tttccaccaa gacgcgagct tatgcttcac tttgtgcctc cggctgcttg
      301 ccgtcgcggt acaccgccgg gatttctttg gcggtcggcc agccgacttt gcgtgctttg
      361 agggcggtac gcaaaccgta cgcggcgaca atcacgacaa ccgacaagaa gaggatggtc
      421 agaccggcat taatcttgtc gttgaagatg atttgcgcca tttcgccgat gtctttggca
      481 ggcgcaagga tttcgttttt agccaatgcg tcgctgtatt tgccggcgtg ggcaaggaag
      541 ctgatgcgcg ggtcgctgtg gaacagtttt tgcaggccgg cgtagcaggt tacgaacagt
      601 acgccgacgg cgggaacgag taccacccag acataacggt cgcgtttcat cttaatcagc
      661 accacggcgc acataatcaa ggctacgcct gccagcattt ggttggcgat gccgaacaaa
      721 ggccagagcg agttgatgcc gcccaacggg tcggtcacgc ccgtgtagag gaagtagccc
      781 cacaatgcca cggcgaagaa ggtcgcaatc aggttggcgg ggatggagtc ggtgttgccg
      841 aaaggtttgt agaagatgct gcccaagtct tgaatcataa aacgtgcgac gcgcgtaccg
      901 gcatcgacgg cggtcaggat gaacaaggct tcaaacaata gggcgaagtg ataccagaac
      961 gccatcatcg cctcgcccgg aatcaggcgg ctcataatgt gcgccatacc gactgcgagg
     1021 gtgggcgcac cgcctgcacg ggaaaggatg gtgttttcgc ccacttcctt agcggtgtgc
     1081 aacagggttg ccgcatcgac agggaattgc agcttggtgg taatcacttc ggcggcggta
     1141 ttggcatccg taccgatcag ggcggcaggg ctgttcatgg cgaagtacac gccgggatca
     1201 agcgatgcgg cggcggcaag cgccataatg gctacgaaac tttccatcaa cataccgccg
     1261 taaccaatca tacggacgtg ggtttcgttt tccagcattt tcggcgtggt gccggaggaa
     1321 atcagcgcgt ggaagcccga aaccgcaccg caggcgatgg tgatgaagag gaacgggaac
     1381 aatgcgcctg agaataccgg acccgaaccg tcgataaagt gggttacggc aggcatttgc
     1441 aaagcgggat tgacgatgac gatgcccaaa gccaaggccg caatcgtacc gattttcagg
     1501 aaggtggaga gatagtcgcg cggagtgagc agcaaccata cgggcaatac ggaggcgaca
     1561 aagccgtaaa tcataatcgc ccaagtgagc tggatgccgt caaggtcgaa ccaatgtccg
     1621 atggaacttt tcgccacatc ttcgccgtaa attaccgcca gcatcagcaa aataaagccg
     1681 acgatggaaa tctcgccgat tttgcccgga cggatatagc gcgtgtaaat acccataaac
     1741 agggcaatcg gcatagtggc ggcgatggtg aacgtacccc aagggctgtg aaccagtgct
     1801 tttacgacaa tcaacgccaa caccgccata atgatgacca taatcatcaa aataccgatg
     1861 gaggcaatca cgccggggac agtgccgagt tcctgtttca caatatcgcc caaagactta
     1921 ccatcgcggc gcatagagac gaacaagacc atcatatcct gtaccgcgcc ggcaaatacc
     1981 acgccgaaga taatccacaa agtaccgggc aggtaaccca tttgcgccgc caaaaccggg
     2041 ccgaccaagg ggcccgcgcc cgcaatcgcg gcaaagtggt gtccgaacaa tacgcccttg
     2101 tgcgtcggaa cgtagtccaa gccgtcgttg tggcgttctg ccggagtcag gcggttagga
     2161 tcgagccgca tcacgcggtt ggcgatgtag aggctgtaaa aacggtaggc gatgcagtaa
     2221 acggatatgg cggcggtgac catccatacc gcgctgacct gttcgcctcg gctgagggcc
     2281 agagtggtaa aggatgctaa gccgaccagt accactatgc cccaaatgag gaaggttttg
     2341 agtgatttca tcgaataaat ccttatctca cactgtcgga atatgcctga acggcgggaa
     2401 acggccgaac catctgccgg cacgggcaca aaccggagtc tgaatgattg acgaagtatg
     2461 aaacagtgcg cttgtcggga tttgtgcctt atgcccgcat caaacagtgc agggatgcgg
     2521 gcgcacaaaa cgttaaacgc cgaatatgat tttaacgcaa attagcacac tgatagcggt
     2581 ttttacttgg aatttggaaa aaatttacat tcctccgtgc ggacagggag gttcagacgg
     2641 catcgtcagg caaaaggcgg cgccggaaga cgggtaaaga aggggcgcgc aatccggatt
     2701 attgattcat cgcgggtaaa ttctggttat cgggcttgtg tgtttgcgcg tccgtttata
     2761 gtatggcgtt gccgcagctt ggaatcaggg cggttgtttc atatcttatt tttattgggg
     2821 agcttttatg aatatcaggt ttttcgcgct gaccgtaccg gttttgtctt tggcggcctg
     2881 tgccgtgccg gaggcgtatg atgacggcgg acgagggcat atgccgcctg ttcaaaacca
     2941 agccggcacg gacgattttc gggcgttttc ctgcgagaac ggtttgtctg tgcgggtccg
     3001 ccatttggac agcggcaaag tcgcgttgcg gctagacggc aggcgtgccg tcctctcttc
     3061 cgacgttgcc gcatccggag aacgctatac cgccgaacac ggtttgttcg gaaacgcaac
     3121 cgagtggcac cagaaaggcg gcgaagcctt tttcggcttt accgatgcct acggcaattc
     3181 ggtcgaaact tcctgccgcg cccgttaaac ggggcagcct gtttgaaccg ccgtccggat
     3241 ttttcgggcg gttttttgta ccggttttgt tttggccgtc ggctggttcc ggcggttttc
     3301 gggcgtggcg gattattttt cgttttgttc cgggtttatt ctatcggcag cggctcaatg
     3361 ccaactttaa acctgctccg atttcttcag ggctgttatc caatgataaa atgacatcgt
     3421 ctgcatcaat ggcatcccac gcttccagct tgacatggcg gctcgggctg attttcaggc
     3481 agccgttgtg cagccaaata tccacgctca tcatgttttt aaatagggcg cgtctggttt
     3541 tatagcccaa gttcccgcat agcttggcaa cccaatcctc atagcgttgc cgaatttttt
     3601 cggtatcaaa aaaatcttgg tcttctggac tgtcataaac gaaagtcctg ctgtttgcca
     3661 atgcttgcaa gaccgttgtg cctaaagttt cattgtcggt atccaatggc aggatatgag
     3721 ggggatatag gtggtctatt gccgttaatc ccaaacctga acatgtttga acaatcagag
     3781 cttcttcatt cgtataaaaa actgtccaat aattttgatt ctgtttaaaa atcattattt
     3841 tatctccgta attttgactg taatgttttg acttttgcca tactctacca cacgttgcaa
     3901 ctgcaatctt tgctccttat atattgcacc ccatcaaagg gctgcattac ttttctttct
     3961 aaagattacc attgtataaa aaagtatttt tcttaaacga cagggattgc gcccgcgcca
     4021 tattcagaca ccgcccagat gttgcgctgc ccgatcggat gcttcagacg gcatcggaag
     4081 ggtttgcagt tttggaatat gaagatgata atgtccgcga gattgacggc atttgaaagc
     4141 ggttattccg cataccggag gacacgaaat gaacgaatat taccaattaa tcaagcatcc
     4201 cgatatttcc ctttccccga tttcagacgg catcggggtc ggcaatccgg caacgggcga
     4261 aattttggcg tatgtccgca atacgggttc ggacaaactg aaaaacctga ttcaaaaggc
     4321 ggcggcagcg caaaaattat gggcggcgaa aactgctttg gaacgcgccg acatattgtg
     4381 gcgttggtat tttttagtta aagaaaacaa agaagcactg gcgcgcctga tgacgatgga
     4441 gcagggcaaa agcctgaccg agtcgcgcgg cgaaattgat tatgcggctt cgtttgtgcg
     4501 ctggtttgcc gaagaggcgc ggcggattga cggcgatgtg ttaacgagtg taaaagcgtc
     4561 gcaaaaactg gttgtgttga aacagcctgt cggcgttacc gccgcgatta cgccgtggaa
     4621 cttcccatct gcaatgattg cgcgcaaggc tgcgcctgct ttggcggtgg gttgcgcgat
     4681 gatcatcaaa cccgcatcgc tcacgccttt gagtgcgtat gccttggctt cgttggctta
     4741 cgaagcgggc ataccgcagg atttgttgcc cgtcgtcagc ggccgcgcat cggaaatcgg
     4801 ccgtgaattt gccacgaacc cgattatccg caaaatcagc ttcaccggtt cgaccgaagt
     4861 cggcgcgaaa atttttgccg acagcgcggc ggacattaaa aaactcagtt tggaactggg
     4921 cggcaacgcg ccgtttatcg tgtttgacga tgccgatttg gacaaagccg tcgaaggtgc
     4981 gctcgccagc aagttccgca acagcggtca gacctgcgtc tgcaccaacc gcgtttacgc
     5041 ccaatccggc atttacgacg aattttgtcg caaattgagt gaaaaagtag ccgagctcaa
     5101 attgggcaac ggcttggagg atggcgtcaa ccaagggccg ctgattgagg aaaaagcggt
     5161 ggagaaagtc gagcagcaca tcgccgacgc gcttgctaaa ggtgcaagct gcctgaccgg
     5221 cggcaaacgc agcgcgttgg gcggaacgtt ttttgagccg accgtcttaa gcggcgtaac
     5281 ggcgcaaatg gcggtggctc gcgaagaaac cttcgggcct ttgtgtccgg tattccgttt
     5341 tgaaaccgaa gccgaagtca ttgaggctgc gaacaatacg gaatacggtt tggctgctta
     5401 cctttttacc gctgacaccg cacgccagtg gcgcgtcggc gaagcattgg aatacggtat
     5461 ggtcggcatc aatacgggct taatcagtaa tgaagcggca ccgttcggcg gcgtgaaacg
     5521 cagcggtttg ggacgtgaag gcagcaaata cggtgcggac gaatatctgg aattgaaata
     5581 tctgtgtatg gatgtcgggt gacggatgcc gtctgaacgg cagggtttca gacggcgccg
     5641 cattttaagc agtctctatc tgttgtacaa tgcgccctgt ttttacggtt atttttgatt
     5701 tgaacaagat atgatggaaa acggaaaaac agtcccgaga tggcgttttg ccttgaaaag
     5761 tgcgggctgg catctcttaa tcagcctgtc ggttgcaggg ctggcggcat tgctggtttt
     5821 taaggtttgg tatccttatc cttatgccga gctgacggga gggctgtcgc tttatcagct
     5881 ggtggtggct gtcgatattg tatgtggtcc gctgctgact ttaattttgg caagcccgaa
     5941 gaaaaagaca aaggcacgca tggtcgattt ttccatggtc ggcatcatcc agctggcggc
     6001 tttggtgtac ggtctgcaca gcgtttcttt ggcgcgccct gtgatagagg cgtttgaaaa
     6061 agacaggatt aatgttgtga ccgccgccga agtggcggtt gaagatttgc acaaagcgcc
     6121 ggaagggctg caaagcctgt cgtggttcgg catccgccgc attgcattga aagaacctga
     6181 ggatgcggat gagaagaaca agacgctgga tttgtccctg aaaggtatcg agccgagtat
     6241 gcgtcccgac cggtggctgc cgtattccga caaggaagca gaaaaaatcc gcaaacatct
     6301 gaaaccgctg aaagtcttgg cggatgcgag aaaaacgacg gttgcggaca ttctgaaaca
     6361 ggcaggtctc gccgaagggg aggagctgta ttacctgccg tttaccagca gcaggcagaa
     6421 agagtggata gtcattaccg ataaagaggg caacaccaaa ggctacgcgc cgatagacgg
     6481 cttcatcatc accccttaag cgttgggact ccgtccgcac tcgaacatcc gttcttcgcg
     6541 gcggtagaat cagactgtat ttgagagggg cgcaacccct caatcagggc aacacatagg
     6601 ggaaggcttt atgtgccgtc cgtgtgttga aacatttcaa aataagctca tgccgtccga
     6661 acatcctttc agacggtatg gcattttgcc attgccccga taagctgtta aactatttaa
     6721 attatttcga ccgaaggtac acgcacatga aagaccccga gcagagcagc aagcccgccc
     6781 gccgtttttt gtgcgtaccg tctgttcagg cagcttgagc gcttcaggct gccttttcgc
     6841 gtttgaactt gaggaatacg aaaatcatgg atttcagttg gttggcagaa ccgcatacct
     6901 ggataggttt tgccacgctt ttggtgttgg aagtcgtatt ggggatagac aaccttgtct
     6961 ttgtggcgat tttggcaaac aaggtccagc ccgcacggcg cgaccgcgca cggattatcg
     7021 ggctggggct ggcagtcgtc atccgcatca ttatgcttgc ttttatggcg cacatcatca
     7081 cgctgaccga gccgctgttc caaatcggcg gcctcgccgt ttccggcaag gacatgatta
     7141 tgctcgcggg cggtattttc ctgctttaca aagccaccac cgaactgcat gaacgcctcg
     7201 aagggcacaa ccgttttact gttgccgaca accaaaaaaa acacgcgccg ttttggggcg
     7261 tggtcgcgca aatcctgata ctggatgccg tgttttccat cgattcggtc attactgcgg
     7321 tggcgatggt cgatcatatc gtcgtggcga tgggtgcggt cgtcgtcgca atggctgtaa
     7381 tgatttctgc cagcaaactc ttgaccgaat ttgtcgacag acaccctacc gtcgtgatgc
     7441 tctgccttgg ttttttgttg atgatcggtt tcagcctgat tgccgaagcc ttccatttcc
     7501 acattcccaa aggctacctc tacgccgcca tcggcttctc gattttaatc gaactgttta
     7561 accagatttc ccagcgcaac agccgcaaaa acgactacat cggcagctcg tggcgcaaac
     7621 ggactgctga aaacgttttg ggtatgatgg gcatacgcga aagcgtgctt gccgacgcgg
     7681 gcggcgaatc cggggacgac gcgcattttg aagaaaacga aaaatcgatg atacgcagcg
     7741 tgctgacgct tgccgaacgc ccgattatgg gggtgatgat cccacgccgc gacatcgaac
     7801 ggctggacat ttcccaaagc cgcgaagaac agtgtgccca actgcaaaac acgccttaca
     7861 gccgcctgct cgttgtcgga aaggcgggcg tggacgaacc tttgggctac atcaacaaaa
     7921 aagacctgct gtcccaactg ctggaaacag gcggtctcga cattcagacg gcattgcgcc
     7981 agccgctcgt cctacccgac ggcacgaccg ccttgggcgc gctcgaactc ttccgccaaa
     8041 gcagcgcgga ttatgctttg gtggtggacg agttcggcgc ggtattgggc atggtaacca
     8101 tgaaagacct gctcgaaacc atcgcaggcg agttccccga agaatttgag cgcgaagaag
     8161 aaccagccgt tcaggggaat cccgatgaaa gcctgacggt ggaaggcgcg ttggaatatg
     8221 tggagctggc atcccaactc aatctgccgc agcaggagga agatgccgat ttccatacgg
     8281 ttgccgggct gattatggaa gaattgcaaa ccatccccga tgtcggcgat tttgccgatt
     8341 tccacggctg gcggtttgaa gtggtcgaaa aagaagggca gcgcatcgag cgggtcaaaa
     8401 tcaccaaatt gcccgaagaa taagcattca ggatagaaaa tgaacgtttt gatttccaac
     8461 gacgacggct acctctccga aggtattgcc gttttggcgc gcgttacggc ggaatttgcc
     8521 aacgtcaggg tggttgcgcc cgaacgcgac aggagcgggg tcagcaattc gctgacgctg
     8581 gaacgccctt tgcagttgaa acaggcgcaa aacgggttct actatgtcaa cggcacgccg
     8641 accgactgca tccacatcgg gcagtctgta ttttcggatt ttcaggccga ttttgtcttt
     8701 tcgggcatca accggggcgc gaatatgggg gacgacacgc tttattcggg gacggttgcg
     8761 gcggcaaccg aagcctacct tatgggcata cccgctgtgg cgttttcctt aaacgacgct
     8821 tccggacgct attgggcaac cgcagaaaag gcactgtgga cattgttggc gcattttttc
     8881 aaaacccccc cgcagttccc tattttgtgg aacatcaata tccccgccgt cgcgccggaa
     8941 gatgtgcggg gcattaaaat cgcccgtttg ggcaggaggc atcacggtca gaacgtcatc
     9001 cccgcgcgca atccgcgcgg cgaacagatt tattggatag gcccggtagg cagggtttcc
     9061 gacaaagaag agggaacgga tttcggtgaa tgcggcgcag gtttcattac cgtaacgccg
     9121 ctgcaaatcg acctgaccgc ctatccggac atggcggaaa cagcggtgtt ctggcatgcg
     9181 gactgaccgt ttcat
//
LOCUS       DAXHNP010000081         9036 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.081, whole genome shotgun sequence.
ACCESSION   DAXHNP010000081 DAXHNP010000000
VERSION     DAXHNP010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9036
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.081"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            332..775
                     /locus_tag="ACFM5C_001330"
                     /pseudo
     CDS             332..775
                     /locus_tag="ACFM5C_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694496.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(983..2368)
                     /gene="pntB"
                     /locus_tag="ACFM5C_001331"
     CDS             complement(983..2368)
                     /gene="pntB"
                     /locus_tag="ACFM5C_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008750 - proton-translocating NAD(P)+
                     transhydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HFC6069023.1"
                     /translation="MSSGLVTAAYIVAAILFIFSLAGLSKQETAKQGCYSGIAGMAVA
                     LFVTVFSDNTHGLGWIIIAMLIGAAIGIYKAKKVEMTEMPELIALLHSFVGLAAVLVG
                     FNSYIAPGNVSHDMHTIHLVEVYLGIFIGAVTFTGSLVAFGKLNGKISSSPLQLPAKH
                     KLNALALAVSFVLLLVFVGIDGSGFILLIMTLIALAFGWHLVASIGGADMPVVVSMLN
                     SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFVSVIAGGFGSDSG
                     TLSSGSQEIGEYREVKAADIAEMLKGANNVIITPGYGMAVAQAQYPVAEITELLRKNG
                     TEVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVN
                     PAAQTDPNSPIAGMPVLEVWKAKEVVVFKRSMNTGYAGVQNPLFFNENSVMCFGDAKK
                     TVDDILSELKK"
     gene            complement(2448..2831)
                     /locus_tag="ACFM5C_001332"
     CDS             complement(2448..2831)
                     /locus_tag="ACFM5C_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HFC6069024.1"
                     /translation="MTFAYWCILIAYLLPLFCAAYAKKAGGFRFKDNHNPRDFLARTQ
                     GTAARAHAAQQNGFEAFAPFAAAVLTAHATGNAGQATVNTLAGLFILFRLAFIWCYIA
                     DKAALRSLMWAGGFVCTVGLFVAAA"
     gene            complement(2835..4376)
                     /locus_tag="ACFM5C_001333"
     CDS             complement(2835..4376)
                     /locus_tag="ACFM5C_001333"
                     /EC_number="7.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HFC6069025.1"
                     /translation="MKIGIPRESLSGETRVACTPATVALLGKLGFETVVESGAGLAAS
                     LDDAAYQTAGATVADKAAVWACPLIYKVNAPSEQELPLLNEGQTIVSFLWPRQNEALV
                     EALRAKKVNALAMDMVPRISRAQALDALSSMANISGYRAVIEAANAFGRFFTGQITAA
                     GKVPPAQVLVIGAGVAGLAAIGTANSLGAVVRAFDTRLEVAEQIESMGGKFLKLDFPQ
                     ESGGSGDGYAKVMSDEFIAAEMKLFAEQAKEVDIIITTAAIPGKPAPKLITKEMVESM
                     KSGSVIVDLAAATGGNCELTRPGELSVTGNGVKIIGYTDMANRLAGQSSQLYATNLVN
                     LTKLLSPNKDGEITLDFEDVIIRNMTVTRDGEITFPPPPIQVSAQPQQTSSEKAAPAA
                     KPEPKPVPLWKKLAPAVIAAVLVLWVGAVAPAAFLNHFIVFVLACVIGYYVVWNVSHS
                     LHTPLMSVTNAISGIIVVGALLQISQGNGFVTLLAFIAILIASINIFGGFAVTRRMLN
                     MFKKG"
     gene            4666..5499
                     /gene="serB"
                     /locus_tag="ACFM5C_001334"
     CDS             4666..5499
                     /gene="serB"
                     /locus_tag="ACFM5C_001334"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFC6069026.1"
                     /translation="MPHALVLQFPSAEVLPSDFPSRLPEPDCADEKRMRFIVEEGFSL
                     SEKDAALLGSRQIDHAVLPDMDFGELGLIVSDMDSTLITIECVDEIAAGVGLKDKVAE
                     ITERSMRGELDFEQSLRSRVALLAGLDERVLADVYENILKLSPGAEFLLDECKRHDVK
                     FLLVSGGFTFFTERLQQRLGFEYQHANVLEIENGRLTGRLKGRIIDAQAKADLLLEYR
                     SRLGLQPHQVLAMGDGANDILMLKETGIGVAYRAKPKVRAAADVCINFGGLERVRGLF
                     R"
     gene            5565..6788
                     /locus_tag="ACFM5C_001335"
     CDS             5565..6788
                     /locus_tag="ACFM5C_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6069027.1"
                     /translation="MGRRKLWFALAAAGVIGGLVGIVLTELMHFIQHTAYGYGADGAY
                     ISFREGVARASEGRRLGVLILCGMLAGGGWWLLKRFGKPQIEIKAALKQPLQGLPFLT
                     TVFHVLLQIITVGLGSPLGREVAPREMTAAFAFAGGRRLGLDEDEMRLLIACASGAGL
                     AAVYNVPLASTLFILEAMLGVWTQQAVAAALLTSVIATAVARIGLGDVQQYHPANLTV
                     STSLLWFSAVIGPILGATAVFFQRTAQKFPFIKRDNIRIILLAVCMFALIGVISVWFP
                     EVLGNGKAGNQLTFSGLTGWQYALELAAVKWPVVLMALAAGAYGGLITPSMMLGSTVS
                     FAAAAAWNSVFPAMPSESAAVVGAAVFLGVSLKMPLTAIVFVLELTYAPLSLLLPLCI
                     GMAGALGTSGKMGFK"
     gene            6948..8528
                     /gene="purH"
                     /locus_tag="ACFM5C_001336"
     CDS             6948..8528
                     /gene="purH"
                     /locus_tag="ACFM5C_001336"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFC6069028.1"
                     /translation="MSVIKRALISLSDKAGAVEFAQTLHKLGVEILSTGGTAKLLADA
                     GVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLDEHVAKMEEHGIGNIDLVCV
                     NLYPFAATIAKPGCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAEME
                     ANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDDVLSGQPQIGEFPSRFNQSW
                     IKVQDMRYGENPHQRAAFYRDIYPAAGSLAAYKQLQGKELSYNNIADADAAWEAVKSF
                     DAPACVIVKHANPCGVAVAADTLTAYKLAYVTDTTSAFGGIIAFNREVDGETVKQITD
                     NQFMEVLMAPKFTAEALEIAAAKKNVRVLEVPLEAGANRFELKRIGGGLLVQTPDIHR
                     ISRADLKVVSKRQPTEQEWNDLLFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDS
                     TRIAARKAQDANLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDA
                     ADEHGIAMVVTDVRHFRH"
BASE COUNT         2064 a         2420 c         2532 g         2020 t
ORIGIN      
        1 actcattagt tacctaaaac ttaaaaagca gaaaccttta cgccgtcatt cccacgaaag
       61 tgggaatccg ggaacttaac gttacagtga tttatcggaa acggctgaaa ccgaatgaat
      121 tggattcccg cctgcgcggg aatgacgaat ccatccgtac ggaaacctgc accacgtcat
      181 tcccacgaac ctacattccg tcattcccac gaaagtggga atccaggacg aaaaatctcc
      241 agaaaccgtt ttacccgata agtttccgca ccgacaggtc tggattcccg cctgcgcggg
      301 aatgacgatg caggtatttc tgacgattcc cggctatgat gttgaggcag aaatcgaaaa
      361 attcgtttgg atggatgctg tgatttggca gatgccgggc tggtggatgc acgagccttg
      421 gacagtgaaa aaatacatag acggagtatt aaccgctgga cacggcaaac tctaccaaag
      481 cgacggcaga cacagcgtca atccgactga gggctacggc acaggcggct tgttgcaagg
      541 caaaaaacat atgctttcac tgacttggaa tgcgccgatt gaggcgttta cccgcgaagg
      601 cgatttcttt gaaggcaaag gcgttgatgt tttgtatatg cacttccaca aagccaacga
      661 gtttttgggt atgacccgcc tgccgacatt cttatgtaac gatgtggtta aaaatccgca
      721 agtggaaaaa tacttggcag attatcaggc acacttggaa aaagtgttcg gctaattaaa
      781 aatccatctt caacacggag atggattttg tttgtttcgt tgattttgtg tcagtttcag
      841 atgtaggtgc ttattcggac gggccgtctg aaaatgtttg ccccaatgca aaaaaatcac
      901 tgcaaacctt cataaacggg gtttgcagtg attttttcaa atcaaacaga ttgaaaacct
      961 gcgccgaatt gttcagacgg cattattttt tcagttcgga cagaatgtca tctacggttt
     1021 tcttcgcatc tccgaaacac atcacgctgt tttcgttgaa gaacagtggg ttttgtacac
     1081 ctgcgtagcc ggtattcatc gagcgtttga agacgacgac ttcttttgcc ttccacactt
     1141 ccaacacggg catacccgca atcgggctgt tcgggtcggt ttgggcggcg gggttgacgg
     1201 tgtcgttcgc accgatgacc aagaccacat cggtttcggg gaagtcgtcg ttgatttcgt
     1261 ccatttccaa aacgatgtcg taggggactt tggcttcggc gagcagtacg ttcatatgac
     1321 cgggcaggcg gccggcgacg gggtggatgc cgaagcgtac ttcggtgccg tttttacgta
     1381 aaagctcggt gatttcggca acggggtatt gcgcttgtgc gactgccata ccgtagcccg
     1441 gggtaatgat gacattgttt gcgcctttca gcatttcggc aatatcggca gctttgactt
     1501 ctcggtattc ccctatctct tggctgccgg aagataatgt gccgctgtcg ctgccgaaac
     1561 caccggcaat taccgagaca aacgagcggt tcatggcttt gcacataatg taggacagaa
     1621 tcgcgccgct tgagccgacc agcgcgccgg taacgatgag caggtcgttg gagagcatga
     1681 agcctgccgc tgcggccgcc cagccggagt aggagttgag catggacacg accacgggca
     1741 tatctgcgcc gccgatggag gcaaccaagt gccagccgaa tgcgagggca atcagggtca
     1801 taatcagcag gatgaagccg ctgccgtcaa tgccgacaaa tacgagcagc aacacaaacg
     1861 atacggcaag tgccagtgcg ttgagcttgt gtttggcggg cagttgcagc gggctgctgc
     1921 tgattttgcc gttgagtttg ccgaatgcga ccagcgagcc ggtaaaggtt accgcgccga
     1981 tgaagatgcc taaatacact tcgaccagat ggatggtgtg catatcgtgc gaaacgttgc
     2041 ccggcgcgat atagctgttg aagccgacca aaaccgccgc taggccgacg aagctgtgca
     2101 gcagggcaat cagttcgggc atttcggtca tttccacctt tttggctttg tagatgccga
     2161 ttgccgcgcc gatgagcatg gcgatgatga tccagcccag tccgtgggta ttgtcggaaa
     2221 aaacagttac aaaaagggcg accgccatac cggcgatacc ggaatagcag ccctgtttgg
     2281 cggtttcctg cttggacagc cccgccagcg aaaagataaa taaaattgcg gcaacgatat
     2341 acgccgctgt tacgagtcct gaagacatgg aaattctccg attttcgatg atttgttttc
     2401 aatgccgtct gaaaaattga cgttcgtgtt ttcagacggc atctgtttca agcagccgcg
     2461 acaaacagcc cgacggtgca gacaaatccg cccgcccaca tcagcgagcg caatgctgct
     2521 ttgtcggcga tgtagcacca gataaaggcg aggcggaaca ggatgaacag gccggcaagc
     2581 gtgttgacgg ttgcttgtcc ggcattgccg gttgcatgtg ccgtcaaaac ggcggcagca
     2641 aacggtgcaa aggcttcaaa accgttttgc tgcgcggcgt gggcacgggc ggctgtgcct
     2701 tgcgtgcgcg ccagaaaatc gcgcggattg tggttgtctt taaaccggaa tccgcccgct
     2761 tttttggcat acgccgcaca aaaaagcggc aataggtagg caatcagaat acaccaatag
     2821 gcgaaagtca tggcttaccc tttcttaaac atattcagca tacgccgtgt taccgcaaag
     2881 ccgccgaaga tgttgatgct ggcaatcagg atggcgatga aggcaagcag ggtaacgaag
     2941 ccgttgcctt ggctgatttg cagcagcgcg ccgacgacga tgatgccgga gatggcgttg
     3001 gtcacggaca tcagcggggt atgcagcgag tggctgacgt tccagacgac gtagtagccg
     3061 atgacgcagg cgaggacgaa cacgatgaag tggttcaaaa atgctgcggg cgcgaccgcg
     3121 ccgacccaca gcaccaacac ggcggcgatg acggcgggcg cgagtttctt ccacagggga
     3181 acgggtttcg gctccggctt ggcggcaggc gcggcttttt cagacgacgt ttgctgcggc
     3241 tgggcggaaa cttgaatcgg cggaggcggg aaggtgattt cgccgtcgcg ggtaacggtc
     3301 atgttgcgga taatcacgtc ttcgaagtcc aacgtgattt cgccgtcttt gttcgggctt
     3361 aacagcttgg tcaggttgac caagttggtg gcgtaaagct gggaagactg tccggcaagg
     3421 cggtttgcca tgtcggtgta gccgatgatt ttcacgccgt tgccggttac ggacaattcg
     3481 cccgggcggg tgagttcgca gttgccgccc gtcgccgccg ccaaatcgac gatgacggag
     3541 ccggatttca tgctttccac catttctttg gtaatcagct tgggcgcggg tttgcccgga
     3601 atggcggcgg tagtgatgat gatgtccact tcttttgcct gctcggcaaa gagcttcatc
     3661 tcggcggcga taaattcgtc gctcatcact ttggcgtagc cgtcgccgct gccgcccgat
     3721 tcttgcggga agtcgagttt caggaacttg ccgcccatcg attcgatttg ttccgccact
     3781 tccaagcggg tatcgaacgc gcgtaccact gcgccgagcg agtttgccgt accgatcgcc
     3841 gccaaacccg ccacacctgc accaatcacc aaaacctgcg cgggcggcac tttgccggcg
     3901 gcggtaattt gaccggtgaa gaaacggccg aaggcgttgg cggcttcaat cacggcgcgg
     3961 tagccgctga tgtttgccat tgaagacaaa gcgtccaaag cctgcgcgcg cgaaatgcgg
     4021 ggcaccatat ccatcgccag cgcgttcact ttcttggcgc gcaaggcttc gaccaaagcc
     4081 tcgttttggc gcggccacag gaagctgacg atggtttgac cttcgttcaa aagcggcagt
     4141 tcctgttcgg acggcgcgtt gaccttataa atcaaagggc aggcccaaac cgccgctttg
     4201 tcggcaacgg ttgcgcctgc tgtttggtaa gcggcatcgt ccaaacttgc cgccaaacct
     4261 gcaccgcttt cgacaacggt ttcaaagccc agtttgccca acagggcaac ggtggcgggc
     4321 gtgcaggcga cacgggtttc gccggataat gactcgcgtg ggataccgat tttcatctct
     4381 gaatcctttt tcgggttgtt tatatgtatc gtgggttaaa tttaaatcgg ggcagggcgg
     4441 agcaacgccg taccggttta aagccgactc acttcaaatg ttaatatatt ttagataatc
     4501 cccttataac gaattttcat caggctggca atagttgcgg cattttcccg tgttgtccga
     4561 cacatactgc cgtttgcgtt tgaagtcatt ttccgattgc agtcccgccc gccgtaacat
     4621 tctttgccgt ttcactatat aatccgcatt ttttgagccg ccgttatgcc gcacgccctc
     4681 gtcctccaat ttccctccgc cgaagtcctg ccttccgact tcccctcacg cctgcccgaa
     4741 cctgattgcg ccgatgaaaa gcgtatgcgt tttatcgttg aagaagggtt ttctttaagc
     4801 gaaaaagacg cggcgttgct tggcagccgt caaatcgacc acgccgtgtt gccggatatg
     4861 gatttcggcg aactcggttt gattgtcagc gatatggatt cgacgctgat taccatcgaa
     4921 tgcgtcgatg aaattgcggc aggcgtgggt ttaaaagaca aagtagcgga aattaccgag
     4981 cgttcgatgc gcggcgaact cgatttcgaa cagtctttac gcagccgcgt cgcgctgttg
     5041 gcgggattgg acgaacgggt tttggcggat gtttatgaaa acattttgaa gctctcgccc
     5101 ggtgcggaat ttttgttgga cgaatgcaaa aggcacgatg tgaaattcct gctggtgtcg
     5161 ggcggcttca cgttttttac cgaaaggctg caacaacgcc tcggcttcga ataccagcac
     5221 gccaatgttt tggaaattga aaacggcagg ctgaccggcc gtctgaaagg tagaatcatc
     5281 gacgcgcagg caaaggcaga tttattgctc gaataccgca gccgcctcgg attgcagcca
     5341 catcaggtgt tggcgatggg cgacggtgcg aacgatattc tgatgctcaa agaaacgggc
     5401 ataggcgtgg cttaccgtgc caaaccgaaa gtgcgggcag ccgccgatgt ctgtatcaac
     5461 ttcggcggtt tggagcgtgt acgcggcctg ttcaggtagg cggataggaa acggatgtcg
     5521 tctgaaaaac gtgttcagac ggcatttgaa cggcaggaac gacagtggga cgcagaaaac
     5581 tttggtttgc cctggcagca gcaggcgtta tcggcggttt ggtcggcatt gtgctgacgg
     5641 aactgatgca cttcatacag catacggcat acggttatgg cgcggacggt gcgtacatct
     5701 cgttccgcga aggtgtggcc cgtgcttcgg aagggcggcg tttaggcgta ttgattctgt
     5761 gcggtatgtt ggcaggcggc ggctggtggt tgctcaaacg tttcggtaag ccgcaaatcg
     5821 aaatcaaagc cgccttgaag cagccgttgc aggggctgcc gtttctgacg acggttttcc
     5881 atgttctgct gcaaatcata acggtcggac tcggttcacc gctcggacgg gaagtcgccc
     5941 cgcgtgaaat gactgccgcg ttcgcttttg ccggcggcag gcggttgggt ttggatgaag
     6001 acgaaatgcg gctgctgatt gcttgcgctt cgggtgcggg tttggcggcc gtgtataacg
     6061 tgccgctcgc ctccacactt tttatcctcg aagccatgct gggcgtgtgg acgcagcaag
     6121 ccgtcgccgc cgcattgctg acttccgtca tcgccaccgc cgtcgcgcgc atcggcttag
     6181 gcgacgtgca gcaatatcat ccggctaacc ttaccgtcag cacctcatta ctttggtttt
     6241 ccgccgtcat cggcccgata ctgggcgcaa ccgccgtctt tttccagcgc acagcccaaa
     6301 agtttccctt tatcaagcgc gacaatatta gaatcattct cttggcagtc tgcatgtttg
     6361 cgctcatcgg cgtgatttcc gtttggtttc ccgaagtttt gggcaacggc aaagcaggca
     6421 accaactgac ttttagtggt ttgaccggtt ggcaatacgc tttggaactt gccgccgtca
     6481 aatggccggt cgtcttgatg gcgctggcgg caggcgcata cggcggactg attacgccgt
     6541 cgatgatgct tggcagcacc gtttcttttg ctgccgccgc cgcgtggaac agtgttttcc
     6601 ccgcaatgcc gtctgaaagc gcggcagtcg tcggagcggc ggtgtttctc ggcgtatcgc
     6661 tcaaaatgcc gctgaccgcc attgtgttcg tattagaact gacctacgcg ccgctgtccc
     6721 tgctgctgcc tttgtgcatc ggcatggcgg gggcattggg aacatcggga aaaatgggct
     6781 tcaaatgaat gtcgacaaat gccgtctgaa aggttttcag acggcatttc tttgtaaatt
     6841 gtcaacaata tctgcaaaaa tctactgcca aaaaactgaa aatagcggat aataccgccc
     6901 cgaaaaagtt cccctttccc catccaactg tcagaaaagg aagcccaatg tccgtcatca
     6961 aacgtgccct gatcagcctg tccgacaagg caggcgcggt cgaatttgcc caaaccctgc
     7021 acaagctcgg tgtcgaaatc ctctccaccg gcggcacggc gaaactgctt gccgatgcgg
     7081 gcgttcccgt gattgaagtc gccgactata ccggcttccc cgaaatgctc gacggccgcg
     7141 tgaaaacgct gcatccgaaa atccacggcg gtattttggg tcggcgcgat ttggacgaac
     7201 acgttgccaa gatggaagaa cacggtatcg gcaacatcga ccttgtgtgt gtcaacctct
     7261 accccttcgc cgccaccatt gccaagcccg gctgcacgct ggaagacgcg attgaaaaca
     7321 tcgacatcgg cggcccgacc atggtgcgtt ctgccgcgaa aaactggaaa cacgtcgcca
     7381 tcgttaccga cacagccgat ttcccggcca tagctgccga aatggaagcc aacaacggcg
     7441 cattgagcga caaaacccgc ttcaacctct cacgcaaagc attcagccat accgcccaat
     7501 acgacggcat gatttccaac tacctgacct cgctttcaga cgacgtcttg agcggccagc
     7561 cccaaatcgg cgaattccca agtcggttca accaaagctg gattaaagtg caagacatgc
     7621 gctacggcga aaatccgcac caacgcgccg cgttctaccg cgatatttac cccgccgcag
     7681 gcagcctcgc tgcatacaaa caactgcaag gcaaagaatt gtcctacaac aacatcgccg
     7741 atgccgatgc cgcatgggaa gccgtcaaat cctttgacgc accagcctgt gtgattgtga
     7801 aacacgccaa tccgtgcggc gtcgccgttg cagccgatac attgaccgcc tacaaactcg
     7861 cctacgtcac cgacaccacc agcgcgttcg gcggcatcat cgccttcaac cgcgaagtgg
     7921 acggcgaaac cgtcaaacag attaccgaca accagtttat ggaagtcttg atggcgccga
     7981 agtttaccgc cgaagccctc gaaatcgccg ccgccaagaa aaacgtgcgc gtattggaag
     8041 tgccgcttga ggcaggcgca aaccgcttcg aactcaaacg catcggcggc ggactgttgg
     8101 tacaaacccc cgacatccac cgcatcagcc gcgccgattt gaaagtcgtc tccaaacgcc
     8161 aaccgaccga gcaggaatgg aacgatttgc tgtttgtctg gaacgtcgcc aaatacgtca
     8221 aatccaacgc catcgtcttc ggcaaaggcg gtcaaaccta cggcatcggc gcaggtcaaa
     8281 tgagccgcgt ggacagcact cgcatcgccg ctcgcaaagc gcaagatgcc aatctcgacc
     8341 tcaatggcgc atgtgccgct tccgatgctt tcttcccctt ccgcgacggc gtagatgtca
     8401 ttgccgagca gggcatcaaa gccatcatcc atccggcagg ctccatgcgc gatcaggaag
     8461 tcttcgacgc agcggacgaa cacggcatcg ccatggtcgt aaccgacgtg cgccacttcc
     8521 gccattaacg cagatgaaca aggcaatgcc gtctgaaggg ctttcagacg gcattttgcg
     8581 ctattttgtg aaggtaggga tgacggttcg ggtattcctg acagggtgga ttttcaaggt
     8641 gttgtatagg gtgtaggagg attcgtaaaa ggtgggatgc agggtgtgct tcagcccgct
     8701 gcatcaaaaa tttttggaga accggcggga gtcggcggtt ttggtttcgg cggggacggt
     8761 ggaaatgggt aacattgacg gaatcgacgg aagcggtggg ctgaagccca cccttgtata
     8821 ttggaatcac tgtatcatag caacaaaccg cccggccgcc acccgcgccc acccaaggca
     8881 cacaaccgtt gcgtagcaca gggagcggca gggcaaccca tcgacacaac cggacagttg
     8941 ccggacaaca caaccgaatg caaggcaggt ttatgatgag tacccaatac cattacgcag
     9001 gtatagtgaa ttaaatctaa accagtacag cgttgg
//
LOCUS       DAXHNP010000082         8886 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.082, whole genome shotgun sequence.
ACCESSION   DAXHNP010000082 DAXHNP010000000
VERSION     DAXHNP010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8886
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.082"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(58..1851)
                     /locus_tag="ACFM5C_001337"
     CDS             complement(58..1851)
                     /locus_tag="ACFM5C_001337"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFC6069029.1"
                     /translation="MQLDIDRLVAYFGGVNALAEALKQHDPENAATTAAIYKWRTRGS
                     LPLAQLQKLTALAEAQGRPLDLNAFLQKNESLERTEMTQANRVIIFDTTLRDGEQSPG
                     AAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTVCSLSRAIE
                     RDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV
                     EFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNG
                     GKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRH
                     DLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRET
                     YEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKELADKK
                     REIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRASATG
                     SGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADTD
                     VLVATAKAYLSALSKLEFSAAKPKAQGSGTI"
     gene            2090..3199
                     /gene="proB"
                     /locus_tag="ACFM5C_001338"
     CDS             2090..3199
                     /gene="proB"
                     /locus_tag="ACFM5C_001338"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFC6069030.1"
                     /translation="MKYKRIVFKVGTSSITHSDGSLSRGKIQTITRQLAALHHAGHEL
                     VLVSSGAVAAGFGALGFKKRPAKIADKQASAAVGQGLLMEEYTANLSSDGIVSAQILL
                     NRTDFADKRRYQNAGGALSVLLQRRAIPIINENDTVSVEELKIGDNDTLSAQVAAMIQ
                     ADLLVLLTDIDGLYTGNPNSNPDAVRLDRIEHINHEIIEMAGGAGSSNGTGGMLTKIK
                     AATIATESGVPVYICSSLKPDALAEAADNQADGSFFVPRAKGLRTQKQWLAFYSESRG
                     GVYVDEGAEHALSEQGKSLLMSGVAGIEGHFSRMDTVTVYSNATKQPLGKGRVLFGSA
                     AAEDLLKSRKAKGVFIHRDDWISITPEIRLLLTEF"
     gene            3212..4474
                     /locus_tag="ACFM5C_001339"
     CDS             3212..4474
                     /locus_tag="ACFM5C_001339"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFC6069031.1"
                     /translation="MSNTQKQLALAKAAKKSVNTADTEEKNRALLAMADSLEAAAADI
                     LAANRLDLEAAAGKIPESMTDRLLLDGKRICAMADGIRAVAALPDPVGEILETSTLPN
                     GLEIVKKRVAMGVIGIIYESRPNVTSDAAALALKSGSAVVLRSGKDAFQSARAIVAAL
                     KAGLAQTRIDPDALQLIEDTGREGSYEMMRAKDYLDLLIPRGGAGLIRAVVENAVVPV
                     IETGTGIVHIYIDKDADWDKALRIVYNAKTSRPSVCNSMEVLLVHEDIAADFLPKLER
                     LLVRDRIKAGLPPVRFRLDPQAARHIGGEAAGADDFDTEFLDYILAVKTVASVEEAVG
                     HIETHGTHHSDGIVTENRHAADYFTTHIDSAAVYVNASTRFTDGGEFGLGCEMGISTQ
                     KLHARGPMGLKELTSYKYIIRGVGQVRE"
     gene            complement(4546..7578)
                     /locus_tag="ACFM5C_001340"
     CDS             complement(4546..7578)
                     /locus_tag="ACFM5C_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6069032.1"
                     /translation="MFWIVLIVILLLALAGLFFVRAQSEREWMREVSAWQEKKGEKQA
                     ELPEIKDGMPDFPELALMLFHAVKTAVYWLFVGVVRFCRNYLAHESEPDRPVPPASAN
                     RADVPTASDGYSDSGNGTEEAETEEAEAAEEEAADTEDIATAVIDNRRIPFDRSIAEG
                     LMPSESEISPVRPVFKEITLEEATRALNSAALRETKKRYIDAFEKNETAVPKVRVSDT
                     PMEGLQIIGLDDPVLQRTYSRMFDADKEAFSESADYGFEPYFEKQHPSAFSAVKAENA
                     RNAPFRRHAGQAEAKSPDVSQGQSVSDGTAVRDACRRVSVNLKEPNKATVSAEARISR
                     LIPESRTVVGKRDVEMPSETENVFTETVSSVGYGGPVYDEAADIYIEEPAAPDAWVVE
                     PPEVPKVPMPAIDIPPPPPVSEIYNRTYEPPTGFEQAQRSRIAETDHLADDVLNGGWQ
                     EETAAIADDGSEGAAERSNGQYLSETEAFGHDSQAVCPFENVPSERPSCRVSDTEADE
                     GAFPSEETGAVSEHLPTTDLLLPPLFNPEATQTEEELLENSITIEEKLAEFKVKVKVV
                     DSYSGPVITRYEIEPDVGVRGNSVLNLEKDLARSLGVASIRVVETILGKTCMGLELPN
                     PKRQMIRLSEIFNSPEFAESKSKLTLALGQDITGQPVVTDLGKAPHLLVAGTTGSGKS
                     VGVNAMILSMLFKAAPEDVRMIMIDPKMLELSIYEGIPHLLAPVVTDMKLAANALNWC
                     VNEMEKRYRLMSFMGVRNLAGFNQKIAEAAARGEKIGNPFSLTPDDPEPLEKLPFIVV
                     VVDEFADLMMTAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI
                     AFQVSSKIDSRTILDQMGAENLLGQGDMLFLPPGTAYPQRVHGAFASDEEVHRVVEYL
                     KQFGEPDYVDDILSGGGSEELPGIGRSGDGETDPMYDEAVSVVLKTRKASISGVQRAL
                     RIGYNRAARLIDQMEAEGIVSAPEHNGNRTILVPLDNA"
     gene            7743..8423
                     /locus_tag="ACFM5C_001341"
     CDS             7743..8423
                     /locus_tag="ACFM5C_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HFC6069033.1"
                     /translation="MIFQTVWFSDMVLSVSWIVLILILAASAPSAFRSLARYRSALPL
                     CTVIFSAAWCLNASAGGGQLAQMNYHLLAVNLVALMVGTSAAFWLAALLMLPYCLLFA
                     GSAGAYPPNALVLILPALAVNRLSRMLVNRLPPNIFIFIFVNGFLASAAGILLTGLVL
                     TGILDAANAFPSEILWTTALPVFILLAWAEAFLSGISTAIFVALKPHWINTFDDNRYL
                     KSDRGIWR"
     gene            8452..8811
                     /locus_tag="ACFM5C_001342"
     CDS             8452..8811
                     /locus_tag="ACFM5C_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFC6069034.1"
                     /translation="MLSNIIPLSIGAALGATARWLLNLAVPAAMSPATGNLFANWTGA
                     LLIGIFAETINHPQWKLLLITGFLGSLTTLSGFSLETVTLLQSNRPASALANIFLHTA
                     GSLLLTWLGLKIGAAVK"
BASE COUNT         1901 a         2533 c         2376 g         2076 t
ORIGIN      
        1 gccgcaatgc cgtctgaagc ctttttatgc ttcagacggc atcgtctgtt ttcacgctca
       61 aatcgtaccg ctgccttgcg ctttcggttt ggcggcacta aattccagct tgctcaaagc
      121 ggaaaggtag gctttggcgg tggcgaccaa aacgtcggta tccgcgccct gaccgttgac
      181 gacgcggttg ccgcgcgcca gacggacgct ggtttcgccc tggctttccg taccttgcgt
      241 gacggcgttg acggaataaa tctgcaaagc cgcgccgctt tgcgccacgc tttcaatcgc
      301 tttgaaaatc gcatccacgg ggccggagcc tgtggcggaa gcgcgttttt cttcgccttt
      361 gatgctgaac acgatgtcgg cgcgcggctc ttcgccggtt tcggtgctga ttttttggga
      421 gatgaatttg tagctctcgg cattcatgct gcccatttcg tcggatacca gtgcgtgcag
      481 gtcttcatcg aagatttcgc gttttttgtc ggcgagttct ttgaagcggg caaacgcggc
      541 gttcagtgcc tcttcgcttt ccaactcgat gcccaaatcc gccagcttgg ttttgaaggc
      601 gttgcggccg gacaatttgc ccaagctcaa acggtttgtt gcccagccga ccgattcggc
      661 ggacataatc tcgtaagttt cgcggtgttt cagcacccca tcctgatgga tgcccgattc
      721 atgcgaaaag gcattggcac cgacaatggc tttgttgggc tgcacgggat agcccgtaat
      781 agtggacacc agtttggacg aaggcacgat ttgcgtggta tcgatgccgg tttccaagcc
      841 gaacaagtcg tggcgcactt tcaacgccat cacgatttct tcaaccgaag cattgcctgc
      901 acgttcgccc aagccgttga cagtacattc cacctgacgt gcgccgcctt ttaatgcggc
      961 aagcgaattg gcaaccgcca agcccaaatc attgtggcag tgtgccgacc aaacgacttt
     1021 gccgccgttg ggcgttttgg caatcagttc gcggaaaaat tcttcggttt tgtacgggat
     1081 ggaatagccg acggtatcgg gaatattgat ggtggtcgcg cccgcttcaa tcaccgcgcc
     1141 gcagatttcg gcaaggaaat cgatttccga acgcaacgcg tcttcgcagg aaaattccac
     1201 atcgtcggtg tattcacgag cgattttcac cgctttgacc gccgcctcaa tcacctgctt
     1261 cggcttcatc ttcaatttgt actccatatg gatggggctg gtggcgatga aggtgtggat
     1321 gcgttttttc ggcgcgggcg caacggcctc acccgcctga cggatgtccc gctcgatggc
     1381 gcgggacaat gaacagaccg ttgatttggt aatggttttc gcaatcgcat tgaccgcctc
     1441 gaaatcgccc gggctggcag cggcaaaacc cgcttcgatg atgtccacac ccaatttttc
     1501 cagctggcgg gcgacgcgga ttttttcctc tttggtcata gcggcgccgg gcgactgctc
     1561 gccgtcgcgc agggtggtgt cgaaaatgat aacgcggttg gcctgtgtca tttctgttct
     1621 ctccagagat tcgttttttt gtaaaaaagc attcaaatcc agcggcctgc cttgcgcttc
     1681 cgccaacgcg gtcagctttt gcagttgcgc cagaggcagc gagccgcgcg tgcgccattt
     1741 atagatggcg gcggtcgtcg cggcattttc gggatcgtgc tgtttcaacg cttcggcaag
     1801 cgcgttcacg ccgccgaaat aagcaaccaa gcggtctata tctaattgca tggtagtcct
     1861 tgtctaaaat caatctgccc gcagcagaaa tatggacagg attatacgca ttttagacaa
     1921 aacggcaata tcaatttgaa aaaatctcaa taactcatca tagattttat taattttata
     1981 cattttgtct attttattgc aggcccagcg caattgttga caattgcggc agaacagggc
     2041 aaattcgaca gcaacaaacc aaacgctaca aacgcaaaga acagaaacaa tgaaatacaa
     2101 gagaatcgta tttaaagtcg gcacatcttc gattacccat tcggacggca gcctctcgcg
     2161 cggcaaaatc caaaccatta cccgccagct tgccgcattg catcatgcgg gacacgagct
     2221 ggtcttggtt tcatccggcg cggttgcggc agggttcggt gcgctgggtt tcaaaaaacg
     2281 tccggccaaa atcgccgaca aacaggcttc cgccgccgtc gggcaggggc tgctgatgga
     2341 agaatatacg gcaaacctgt cttcagacgg catcgtgtcc gcgcaaatcc tgctcaaccg
     2401 caccgacttt gccgacaaac gccgctacca aaatgccggc ggcgcgcttt ccgtgctgct
     2461 gcaacgccgc gcgattccca ttattaatga aaacgacacg gtttcggttg aggagttgaa
     2521 aatcggcgac aacgacacat tgagtgcgca agtggcggcg atgatacagg cagacctctt
     2581 ggtgctgctg accgacatag acggtcttta cacgggcaac ccgaacagca atcccgatgc
     2641 cgtacggctg gacagaatcg aacacatcaa ccatgaaatc atcgaaatgg caggcggcgc
     2701 gggctcgtca aacggcacgg gcggtatgct gaccaaaatc aaagcggcga cgattgcgac
     2761 cgagtccggc gtaccggtct atatctgttc ctcgctcaaa cccgatgcgc ttgccgaagc
     2821 ggcagataat caggcggacg gctcgttttt cgtcccccgc gccaaaggtt tgcggacgca
     2881 gaagcaatgg ctggcgttct attccgaaag ccggggcggc gtttatgtgg acgaaggtgc
     2941 ggaacacgct ttgtccgaac agggaaagag cctgctgatg tcgggcgttg ccggaatcga
     3001 agggcatttt tcccgtatgg acaccgtaac cgtgtacagc aacgcaacca aacagccttt
     3061 gggcaaaggg cgcgtccttt tcggctctgc cgccgccgaa gacctgctca aatcgcgcaa
     3121 agcgaaaggc gtgttcatcc atcgggacga ttggatttcc atcacgcccg aaatacgcct
     3181 gcttctgacc gaattttaga aaaggaaacc catgtcaaac acacaaaaac agcttgccct
     3241 tgccaaagcg gcaaaaaaat ccgtcaacac ggcggatacg gaagaaaaaa accgcgcgct
     3301 gcttgctatg gcggacagtc tggaagcggc ggcggcagat attttggcgg caaaccgttt
     3361 ggatttggaa gcggcggcag gcaaaattcc cgaaagcatg accgaccgcc ttttgttgga
     3421 cggcaaacgc atttgcgcga tggcggacgg catcagggcg gttgccgcgc tgcccgaccc
     3481 cgtgggcgaa atactggaaa cctcgactct gcccaacggc ttggaaatcg tcaaaaagcg
     3541 tgtggcgatg ggcgttatcg gcattattta cgaaagccgc ccgaacgtta cgtccgatgc
     3601 ggcggctttg gcactgaaaa gcggcagcgc ggtcgtactc cgcagcggca aagatgcatt
     3661 ccaatccgca cgcgccatcg ttgccgcact caaagccggt ttggcgcaaa cccgcatcga
     3721 ccccgacgcg ctccagttga ttgaagacac cgggcgtgag ggcagttacg aaatgatgag
     3781 ggcgaaagat tatctagacc tgctgattcc gcgcggcggg gcggggctga tacgggcggt
     3841 ggttgaaaat gccgtcgtgc cggttattga aacggggacg ggcatcgtcc acatttatat
     3901 cgacaaggac gcggattggg acaaggcgct ccgtatcgtg tacaacgcca aaaccagccg
     3961 tccgtccgtg tgcaactcga tggaagtgct gctggtgcat gaagacattg ctgccgactt
     4021 cctgcccaag ctcgaacggc tgttggttcg cgaccgtata aaagccggac tgccgcccgt
     4081 ccgcttccgt ttggatccgc aggcggcacg gcatatcggc ggcgaagcgg cgggtgcaga
     4141 cgatttcgat accgagtttt tagactacat cctcgccgtg aaaaccgtcg cttcggtcga
     4201 agaggcggtc gggcacatcg aaacgcacgg cacgcaccat tcagacggca tcgttaccga
     4261 aaaccgccac gctgcggact atttcacgac ccatatcgat tctgccgccg tgtatgtcaa
     4321 cgcgtccacg cgctttaccg acggcggcga attcggcttg ggttgcgaaa tgggcatctc
     4381 cacgcaaaaa ctccacgccc ggggtccgat gggtttgaaa gagctgacaa gctataaata
     4441 catcattcgg ggcgttgggc aggtcaggga ataatccgca ttcaaacgtc cgataaaaat
     4501 gccgtctgaa acagtcttca gacggcattt ccatttgcaa aaaaatcaag cattgtccaa
     4561 ggggacgaga atcgtacggt tgccgttgtg ttccggcgcg gatacgatgc cttccgcctc
     4621 catctggtca atcagccgcg cggcgcggtt gtagccgata cgcaatgcgc gctgcacgcc
     4681 agaaatgctg gctttgcgcg ttttcaaaac aacggacacg gcctcatcgt acatcggatc
     4741 ggtttcgccg tcgccgctgc gcccgatgcc gggcagctct tcgctgccgc cgccgctcaa
     4801 aatatcgtca acatagtccg gttcgccaaa ctgcttcaga tattcgacca cgcggtgcac
     4861 ctcttcatcc gaggcaaacg cgccgtgaac gcgctgcgga taggcagtac ccggcggcag
     4921 gaacagcata tcgccctgac cgagcaggtt ttccgcgccc atttggtcga gaatcgtgcg
     4981 gctgtcgatt ttgctggaca cttggaacgc gatacgcgtc gggatgttcg ccttaatcag
     5041 acccgtgatg acatcgacgc tggggcgttg tgtggcaagg ataagatgga tgcctgccgc
     5101 gcgggctttt tgggcgaggc gggcaatcag ttcctcgatt ttcttgcctg ccgtcatcat
     5161 caaatcggca aactcatcga ccaccaccac gataaacggc agtttttcca aaggttcggg
     5221 atcgtcgggc gtgaggctga acgggttgcc gattttctcc ccccttgctg cggcttcggc
     5281 gattttttga ttgaaacccg caagattgcg cacgcccata aagctcatca ggcggtagcg
     5341 tttttccatt tcgttaacac accagttcag cgcgtttgcc gccagcttca tatcggtaac
     5401 gacaggggcg agcaggtgcg ggatgccttc gtaaatgctc aattccagca ttttcggatc
     5461 gatcataatc atacgcacgt cttccggcgc ggctttgaaa agcatagaca gaatcatcgc
     5521 gttgacaccc accgatttgc ccgaaccggt cgtgccggca accagcaaat gcggtgcttt
     5581 gcccaagtcg gttacgacgg gctgtccggt gatgtcctga ccgagcgcga gcgtcagctt
     5641 ggatttggat tcggcaaact cgggcgaatt gaagatttcg ctcaggcgta tcatttggcg
     5701 tttcgggttc ggaagttcca aacccataca ggttttgccg aggatggttt cgacaacgcg
     5761 gatggaagcc acgccgagcg aacgcgccaa gtctttttcc agatttagaa cggaattgcc
     5821 gcgcacgccg acatcgggtt cgatttcata acgcgtaatc acggggccgg aataagaatc
     5881 gacaaccttg accttgactt tgaactccgc caatttttct tcgatggtga tgctgttttc
     5941 caacagttct tcttcggttt gcgtcgcctc gggattgaac agcggcggca gaagcaggtc
     6001 ggttgtcggc aggtgttcgg ataccgcacc ggtttcttca gatgggaacg ccccttcatc
     6061 cgcttccgta tccgataccc ggcaggacgg gcgttcagac ggcacatttt caaacggaca
     6121 aaccgcctga ctgtcatgcc cgaacgcttc ggtttccgac agatattgcc cgtttgaccg
     6181 ctctgccgca ccttcactgc cgtcatctgc aatagcggcg gtttcctcct gccaacctcc
     6241 attcaaaaca tcatcggcaa gatggtcggt ttcagcaatg cggctgcgtt gcgcctgctc
     6301 gaatcctgtc ggcggctcat aggtacggtt gtagatttcc gatacgggag gcggcggcgg
     6361 aatatcgatt gcgggcatgg gaactttcgg cacttcgggt ggttcgacca cccaagcatc
     6421 gggcgcagca ggttcttcaa tatagatatc ggcagcttca tcataaaccg gaccgccgta
     6481 tcccacagac gaaacggttt ccgtgaaaac attttcggtt tcagacggca tttcgacatc
     6541 ccgtttcccg acaaccgtcc gactttccgg aatcaggcgc gaaatccgcg cctccgcaga
     6601 aaccgttgcc ttgttcggtt ctttcaaatt gacggaaacg cggcggcagg catcgcggac
     6661 ggctgtgccg tctgaaacgg actgtccttg ggaaacatcc ggggattttg cctccgcctg
     6721 ccctgcatga cggcggaacg gcgcattccg tgcattttcg gctttgactg cagaaaaggc
     6781 agacggatgc tgcttctcaa aatacggctc aaatccgtaa tccgcagact cggaaaacgc
     6841 ttctttgtcc gcatcgaaca tacgggaata cgtgcgttga agcacagggt cgtccaaacc
     6901 gataatctgt agcccttcca tcggggtatc ggacacgcgg actttgggga ccgctgtttc
     6961 gtttttctca aatgcatcga tatagcgttt tttcgtttcc cttaaagccg cgctgtttaa
     7021 agcacgcgtt gcttcttcca aagtgatttc cttaaaaacc ggacggacgg gcgaaatttc
     7081 gctttcagac ggcatcaacc cttcagcaat actccggtcg aatgggatgc ggcggttgtc
     7141 gattacggca gttgcaatgt cttccgtatc ggcagcctct tcctccgcag cttctgcttc
     7201 ttccgtttcc gcttcttccg tcccgtttcc actgtctgaa tatccgtcgg atgcggtcgg
     7261 aacatccgca cggtttgcag aagcaggcgg aacgggcctg tccggttcgg attcgtgcgc
     7321 cagatagttt cggcagaaac ggacgacacc gacaaacagc caatacactg ccgttttgac
     7381 ggcatggaaa agcatcaggg caagttcggg aaaatcgggc ataccgtctt tgatttcagg
     7441 cagctccgcc tgtttttccc ctttcttttc ctgccacgca gaaacctcgc gcatccactc
     7501 gcgttcggat tgtgcgcgga caaaaaacaa gccggcaagc gcaagcaaca aaataacgat
     7561 caaaactatc caaaacatat gccgtttccc gcaagacaaa cgattaaacg ggtttatttt
     7621 aacgtgtttc catcccaaaa aaaacaaccg gtcggcaatt ctgccgaaac cgattcggct
     7681 ttcggtttgc ccccgccgac agtataatag ccgtcctttc ccttaatctt tgcggcattg
     7741 ccatgatttt ccaaacagtc tggttttcag atatggtact gtcggtttcg tggattgtcc
     7801 ttatcctgat actggcagct tccgcgccgt ccgcattccg ctcgcttgcc cgctaccgtt
     7861 ccgcccttcc cctgtgtacc gtaatttttt ccgcagcatg gtgtctgaac gcctctgccg
     7921 gcggcggaca gcttgcccag atgaactacc atctgctcgc cgtcaatctg gttgcactga
     7981 tggtgggcac ttccgccgcc ttttggcttg ccgcgctgct gatgctgccc tactgcctgc
     8041 tgtttgccgg ttctgccggc gcatatccgc cgaacgcttt ggtgctgatt ctgcccgcgc
     8101 ttgccgtcaa ccgcctgtcg cgtatgctgg tcaaccgcct gccgcccaat attttcatct
     8161 ttattttcgt caacggcttt ctcgcttccg ccgccggcat tctgttgacc gggctggtgc
     8221 tgaccggtat tttggatgct gcaaacgctt ttccgtccga aatattgtgg acgaccgccc
     8281 tgcccgtctt tattctgctg gcgtgggcgg aagccttcct cagcggcatt tcaactgcca
     8341 tatttgttgc actgaagccc cattggatca acactttcga cgacaaccgc tatctgaagt
     8401 ccgaccgcgg catatggcgg tagccttcag acggcatagg cagacaaaac catgctttcc
     8461 aacatcatcc ccctttccat cggtgcggca ctcggtgcaa cggcgcgttg gctgctcaac
     8521 ctcgccgttc ctgccgccat gtctcccgcc acgggcaacc tgtttgccaa ctggacgggc
     8581 gcgctgctca tcggcatctt tgccgaaacc atcaatcacc cgcaatggaa gctgctgctg
     8641 attaccggtt ttctcggcag cctgaccacg ctttccggat tttcactgga aaccgtaacc
     8701 ctgctccaat cgaatcgtcc tgcttcagca cttgccaata ttttcctaca cacggcaggt
     8761 tcgctgctgc tgacttggct cgggctgaag ataggggcgg cagtcaaata accgcaacaa
     8821 attgcctccc tttgttttga cataatctat aaattagctt cgcttgttta aatactggct
     8881 gtgcca
//
LOCUS       DAXHNP010000083         8766 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.083, whole genome shotgun sequence.
ACCESSION   DAXHNP010000083 DAXHNP010000000
VERSION     DAXHNP010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8766
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.083"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..442
                     /gene="rfbC"
                     /locus_tag="ACFM5C_001343"
     CDS             <1..442
                     /gene="rfbC"
                     /locus_tag="ACFM5C_001343"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6069035.1"
                     /translation="WFKTQVCERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVG
                     EVFDVAIDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDTTELTYKCTDY
                     YKPEAEQVLIWNDPAIGIDWPLQGEPNLSPKDLAGKVLAEAVTF"
     gene            466..2580
                     /locus_tag="ACFM5C_001344"
     CDS             466..2580
                     /locus_tag="ACFM5C_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFC6069036.1"
                     /translation="MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEF
                     HIYKDGKGAEAVVGWGLRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSI
                     VYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQTMDFILQHHLSKYNHAPELSD
                     DHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPD
                     VLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTT
                     FGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSL
                     FDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVK
                     LSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSI
                     YFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTV
                     ILVPGQVEDDASIRYGSPKIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISP
                     EDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLT
                     QDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNN
                     GLHRGCFAKKLGKIKQLYRSFK"
     gene            2717..3976
                     /locus_tag="ACFM5C_001345"
     CDS             2717..3976
                     /locus_tag="ACFM5C_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFC6069037.1"
                     /translation="MKQTVLQNNLQNLLESAENILLLQGPVGDFFLRLADWLTENGKT
                     VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYIVQHHIQAVVCFGDTRPYHV
                     IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
                     EAPTPVRGGFMPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
                     YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
                     ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVPLPVFLRHGLGMVTI
                     NSTSGLSGLIHNMPVKVLGRAHYDIPGMTDQNTLAEFWNHPTPPDKELFHAYRMYHLN
                     VTQINGNFYSQVFFPNKNTSDSSTPTT"
     gene            4346..5752
                     /locus_tag="ACFM5C_001346"
     CDS             4346..5752
                     /locus_tag="ACFM5C_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6069038.1"
                     /translation="MTAAPDILYRQAAALLEQSNTAQALPLLQQAAEQGYAEAAFVLG
                     NHLLQNGQPEQALSWLEAAAAQRHPKALFSLLQQREHNGTPTGQLLNDYAWLGEQGHS
                     EAQLILMRYHAQRNDPQSLYWAELAAARYAAPAYYHLARHHQRQGDVETAIEQYEKAA
                     ALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEPAAQAGHIAAQTLLADLLAAQRKPE
                     ALEWYRRAADKEQAEAQSKLAQYALTGELSERDPFQAARYAKAAAEKNHPEALKIMGD
                     LYRYGLGIKADNHIAHDYYHRAAALGSAAAAQKLISDAALYHPQQYEQIKTAALQQQQ
                     TETIYRLAEAQACAIGRPADYNAARKNYMEAAGFHHKNAAAALGRIYHYGLGTAQDPR
                     AAAHWYAIAAEQNHPSAQYHLACFYYHGQGVGCHVPTACYWLQAAIGNGHTSAESLIS
                     LLEQWRREAHHAIGQKAV"
     gene            5970..7184
                     /gene="gltS"
                     /locus_tag="ACFM5C_001347"
     CDS             5970..7184
                     /gene="gltS"
                     /locus_tag="ACFM5C_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HFC6069039.1"
                     /translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
                     VAAIILFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
                     GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
                     LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
                     AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
                     DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
                     GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
                     AILTGFVNFFKG"
     gene            7283..8299
                     /locus_tag="ACFM5C_001348"
     CDS             7283..8299
                     /locus_tag="ACFM5C_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6069040.1"
                     /translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
                     LTQEARSFAHEDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
                     TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
                     GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
                     AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
                     LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
                     YSID"
     gene            8310..8507
                     /locus_tag="ACFM5C_001349"
     CDS             8310..8507
                     /locus_tag="ACFM5C_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069041.1"
                     /translation="MNTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAA
                     RLGENGFTEEQMENIANLFGR"
     gene            8525..8674
                     /locus_tag="ACFM5C_001350"
     CDS             8525..8674
                     /locus_tag="ACFM5C_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069042.1"
                     /translation="MPSETLLSVSDGILTNTVRRRKTAVFSCVSYADVSTHKTAHKAL
                     PYVPS"
BASE COUNT         2253 a         2565 c         2036 g         1912 t
ORIGIN      
        1 gtggtttaaa acccaagtct gcgaacgcac cttcgtgcag gaaaaccact ccaaatccgg
       61 caaaggcgta ttgcgcggcc tgcactacca aaccgaaaac acacaaggca aactcgtacg
      121 cgtagttgtc ggcgaagtgt tcgacgtggc catcgatatg cgcgaaggtt cgccgacttt
      181 cggcaaatgg gcgggcgcaa ccctgtccgc gcaaaaccaa tgccagcttt ggatacccga
      241 aggcttcgca cacgggtttt acgttttgag cgacacgacc gaacttacct acaaatgcac
      301 ggactattac aagcctgaag ccgaacaggt tttaatatgg aacgacccgg caatcggcat
      361 cgactggccg ctacaaggcg agccgaacct gtcgcctaaa gacttggcag gcaaagtatt
      421 ggccgaagca gtcacgtttt aagactattc aggccgtctg aaagaatgtt cctcttttca
      481 gacggcctac aatccattaa taacaataat cgacgaaaac gcattgtgaa aaacgcctac
      541 atcccctctc gtggcatccg caaaatcccc catctctcca ccctattgcc cgagtttcat
      601 atctacaaag acggaaaagg agcagaggct gttgtcggct ggggtttgcg cccgacgaca
      661 cacaaagcgc gtgcttttgc caccgaacac cagcttccct ttattgcttt ggaagacggc
      721 tttttacgct cgctcggact gggcgtctcc ggttatcccc cctactccat cgtctatgac
      781 gacatcggca tctactacga cactacccgc ccttctcgtt tggaacaact gattcttgcc
      841 gccgatacca tgccgtctga aaccttggct caggcgcaac agacgatgga tttcatcctg
      901 caacaccacc tgtccaaata caaccacgcg cccgaacttt cagacgatca tcctttacgc
      961 tccccatcca agcctgaaac ggtcctcatt atcgaccaaa ccttcggcga tatggccatc
     1021 caatatggcg gcgcagacgc ctctacgttt gaactgatgt ttcagacggc cttgaatgaa
     1081 aacccgcaag ccgatatctg ggtaaaaacc catcccgatg ttttgtgcgg caaaaaacaa
     1141 ggctatctga cccaactggc gcagcaacac cgcgtccatc ttctggcaga agacatcaac
     1201 ccgatttctt tgttgcaaaa cgtcgataaa gtttattgcg ttacctcgca aatgggtttt
     1261 gaggcacttt tgtgcggcaa gccgctgacc accttcggcc tgccgtggta tgccggatgg
     1321 ggtgtaagcg acgaccgcca tcctgaaatc aaccgccttg ttcaaaccca acgccgcgcc
     1381 acccgcaact tgctgcagct cttcgccgca gcctatctgc aatacagccg ctacctcaac
     1441 cccaataccg gcgaagcagg cagcctcttt gatgtcatcg actatctggc gacggtcaaa
     1501 cgtaaaaacg acaaattgcg tggcgagtta tattgcgtcg gtatgtcttt gtggaaacgc
     1561 gcggttgcca aaccgttctt taacgtaccc tcttgccgtc tgaaatttat ctcttccacc
     1621 caaaaactgg caagggtcaa actgtccgac gatgcacgca tccttgcctg gggcaacggc
     1681 aaagaggcca tcgtccgctt tgccgaacaa caccacatcc ccctgctgcg catggaagac
     1741 ggctttatcc gctcggtcgg actcggctcc aacttagtgc cgccgctgtc gctcgttacc
     1801 gacgatatga gcatttattt caatgccgaa accccgtccc gtcttgaata catcctacaa
     1861 aaccaaaact tcgacgatca agactttcag acggccttga agctgcaaaa aatgctgacc
     1921 gaaaaccaca tcagtaaata caacgtcggc agctcagact tcaccgcccc gtcaaccgac
     1981 aaaaccgtga tcctcgttcc cggccaggtt gaagatgatg cgtctatccg ctacggttcg
     2041 cccaaaatct atcgcaatct ggatttgctc cgtaccgtac gcgaacgaaa ccccaatgcc
     2101 tatatcatct acaaaccgca tcccgatgta gtcagcggta accgcatcgg ccatatttcc
     2161 cctgaagatg ctgcacgata tgccgaccaa accgccgaac aagccgacat cctgacctgt
     2221 ctccaatacg cagacgaaat acataccatg acttcgctga ccggttttga agccttgttg
     2281 cgcggcaaaa aagtcagctg ctacggcctg cctttttacg caggctgggg gcttacccaa
     2341 gatctgctcc ccatcccgcg ccgtagccgc agacttgagc tttggcagct gattgccggc
     2401 acgctcatcc actatcccga ctacatccac cccgaaaccc atcaggccat aaatgcagaa
     2461 accgcagccc aaatcctgat acgacaaaaa aatatgcaaa aaaacaacaa cggattacat
     2521 cgcgggtgct ttgccaaaaa attaggtaaa atcaaacaac tatatcgatc tttcaaataa
     2581 ataccatcaa agttaacgat gcgtcataaa cttgcctcta ttgcggcatc attgcctttg
     2641 catcgttaat tctcttggcg tatgcttgaa agttcaacct aaaactatta cataaaaaac
     2701 aaaaccacat tgcaacatga aacagaccgt cctccaaaac aacctgcaaa acctgctcga
     2761 aagcgcagaa aatatcctgc tgcttcaagg tcctgtcggc gatttttttc tgcgccttgc
     2821 cgactggctg actgaaaacg gcaaaaccgt acataaattc aactttaatg caggcgacga
     2881 ctatttttat ccgcccactc aagcgcatac cgttgttttt aacgacaact acgatgcctt
     2941 tcctgaattt ttgcaagaat acatcgttca acatcacatc caggcggttg tctgctttgg
     3001 cgacacacgc ccttatcacg tcattgcaaa acgcattgca aacgaaaacc aagccagttt
     3061 ctgggcgttt gaagaaggct atttccgccc ctactacatc acattagaaa aagacggcgt
     3121 caacgcattt tcaccgttgc cgcgccgtgc cgactttttt cttgaacaat tccccaaact
     3181 ggcccagcaa gaatatgaag cgccaacgcc ggtacgcggc gggtttatgc ccatggcaaa
     3241 aaacgctatc cgttactata tcgagttgtt ccgcaatcca cgcaaatacc ccgactacat
     3301 ccaccaccgc gcacccaatg ccggccatta cctcaaaccg tggtcgctct ccatcctcaa
     3361 gcgtttgaac tactatattg aagacatcca aatcgccaaa cgtgtggaag caggcaaata
     3421 cggcaagttt tttattgttc ccttacaggt attcaacgac agccaagtcc gtatccattg
     3481 cgactttccc agcgtccgca gcttcctgct ccatgttttg agttcatttg ccgagcacgc
     3541 gcctgccgat accaacatca tcatcaagca tcatccgatg gaccgcggtt ttatcgacta
     3601 ctggcgcgac attaaacgct ttatcaaaga acaccccgaa ctcaaaggcc gcgtgattta
     3661 tgtccatgat gtccccctgc ccgttttcct gcgccacggt ctcggcatgg ttaccatcaa
     3721 cagcaccagc ggcctgtccg gcctgattca caatatgcct gtcaaagtgc tcggccgtgc
     3781 ccattacgac attcccggca tgactgacca aaataccttg gcagaatttt ggaatcatcc
     3841 gacaccgcct gacaaagagc tgttccatgc ctaccgaatg taccacctca acgtgaccca
     3901 aattaacggc aacttctaca gtcaggtctt ttttcctaac aaaaacacat ccgactcttc
     3961 cacaccaaca acctaacttg gcgaaagaaa agctcaggcc gtctgaaata tttttcagac
     4021 ggcctgaagc aatcaatacc ttagctactg ccatgtaaat aaaacacaaa aacctgcatt
     4081 tatcattaac aataaattac aaaaacagta taatgaccga gctgccatga gcgcataccg
     4141 actcaacctg agccctttgt aacacacaaa atatggatat atccctaggc aaaacaatat
     4201 aacaagccaa acatcctaaa gataagccgg caaggcaata cactctataa aactatgccg
     4261 agcaaaattt ttacaaagcc ctcaaccggt atcgccgccc atatgccgca gcatccgtct
     4321 tccactttat atccgcccgc aaaccatgac cgccgctcct gatatcctct accggcaagc
     4381 cgccgccctt ttggaacaat ccaataccgc ccaagccctg cccctgttgc aacaggcggc
     4441 agagcaaggt tatgcggaag ctgctttcgt attgggcaac catctgctgc aaaacggcca
     4501 accggagcag gcactttcat ggttggaagc cgccgcggcc caacgccatc ccaaagcact
     4561 cttctccctg ctgcaacaac gcgaacacaa cggcaccccg accggacagc ttctcaacga
     4621 ctatgcctgg ctgggtgagc aggggcactc agaagcccaa ttaatcctca tgcgttacca
     4681 cgcgcaacgc aacgatccac aatcgctcta ctgggcggaa cttgctgccg cccgatatgc
     4741 cgcacctgcg tattaccatc tggcacgcca tcatcaacgc caaggcgacg ttgaaacagc
     4801 catcgaacaa tacgaaaaag cggcagcact cggcgtaact gccgcctgct ggcaacttgg
     4861 tcaaatctac ttctacggta caggtgtcag ccccaaccac gcacaagccg aacactatct
     4921 cgaaccagcc gcacaagccg gccacatcgc cgcacaaacg ctgctggctg accttcttgc
     4981 cgcccaacgc aaacctgaag ccttggaatg gtatcgtcgt gccgccgata aggaacaagc
     5041 ggaagcacag tctaagctgg cccaatacgc cctgaccggc gaactttccg aacgcgatcc
     5101 gttccaagcg gcacgatatg ccaaagccgc tgccgagaaa aaccatcctg aagccctgaa
     5161 aatcatgggc gacctctacc gctacggcct cggcatcaaa gctgacaacc atatcgcgca
     5221 cgattactac caccgtgctg ccgcgctggg ttctgccgcc gcagcacaaa aactcatcag
     5281 cgacgccgcg ctgtaccatc cgcaacaata cgaacaaatc aaaactgccg ccctgcaaca
     5341 acaacaaacc gaaaccatct accgtttggc ggaagcacaa gcctgcgcca tcggccgtcc
     5401 cgccgactac aatgccgcgc gaaaaaatta catggaagct gccgggttcc accataaaaa
     5461 cgcagcggca gccttaggcc gcatctacca ttacggcctc ggtacggcgc aagatcctcg
     5521 ggcggctgca cactggtacg ccattgctgc cgaacaaaac cacccttccg cccaatacca
     5581 cctcgcctgt ttttactatc acgggcaagg tgtcggctgt catgttccga ccgcctgcta
     5641 ctggctgcag gccgccatcg gcaacggcca cacttcggcc gaatcattaa tatccctatt
     5701 agaacaatgg cgacgcgaag cacaccatgc catcggacaa aaggccgtct gaaaagattt
     5761 acactcgcat tttttgacaa tctttaacta ttcccctaat atttgccagt tatttttcac
     5821 ggacacgcca ttgttttcat ttctttctga aaacaccttg tccgcgcatc aataccatga
     5881 cactcggcgg ataacgccaa gcgttgaaac acactacatc cggaacaaaa acggatgctc
     5941 ggaaaaatat ttctaggagg tgaaacaaca tggaatggga attcaacagt tattacacac
     6001 tgattgccgc cacgctcgtg ttgctggttg gtaaatttct ggttcaaaaa atcaaattct
     6061 tacgagactt caatattccc gagccggtcg ctggcggttt ggttgccgcg attatcctgt
     6121 ttgcgctgca cgaggcgtac ggcgtgagct tcaaatttga gaaaccgctg caaaatgcgt
     6181 ttatgctgat ttttttcacg tccatcggct tgagcgcgga tttttcccgt ttgaaggcgg
     6241 gcggtttgcc gctggtggtt tttaccgcga ttgtgggcgg atttatcttg gtgcaaaact
     6301 ttgtcggggt cggactggct acggctttgg gtttggaccc gctcatcggt ctgattaccg
     6361 gttcggtgtc gctgacgggc ggacacggta cgtcaggtgc gtggggacct aattttgaaa
     6421 cgcaatacgg cttggtcggc gcaaccggtt tgggtattgc atcggctact ttcgggctgg
     6481 tgttcggcgg cctgatcggc gggccggttg cgcgccgcct gatcaacaaa atgggccgca
     6541 aaccggttga aaacaaaaaa caggatcagg acgacaacgc ggacgacgtg ttcgagcagg
     6601 caaaacgcac ccgcctgatt acggcggaat ctgccgttga aacgcttgcc atgtttgccg
     6661 cgtgtttggc gtttgccgag attatggacg gcttcgacaa agaatacctg ttcgacctgc
     6721 ccaaattcgt gtggtgtctg tttggcggcg tggtcatccg caacatcctc actgccgcat
     6781 tcaaggtcaa tatgttcgac cgcgccatcg atgtgttcgg caatgcttcg ctttcgcttt
     6841 tcttggcaat ggcgttgctg aatttgaaac tgtgggagct gaccggtttg gcggggcctg
     6901 taaccgtgat tcttgccgta caaaccgtgg tgatggtttt gtacgcgact tttgttacct
     6961 atgtctttat ggggcgcgac tatgatgcgg cagtattggc tgccggccat tgcggtttcg
     7021 gcttgggtgc aacgccgacg gcggtggcaa atatgcagtc cgtcacgcat actttcggcg
     7081 cgtcgcataa ggcgtttttg attgtgccta tggtcggcgc gttcttcgtc gatttgatta
     7141 atgccgcgat tctcaccggt tttgtgaatt tctttaaagg ctgattttcc gcctttccga
     7201 caaagcacct gcaaggttta ccgcctgcag gtgcttttgc tatgatagcc gctatcggtc
     7261 tgcaccgttt ggaaggaaca tcatgtatcg gaaactcatt gcgctgccgt ttgccctgct
     7321 gcttgccgct tgcggcaggg aagaaccgcc caaggcattg gaatgcgcca accccgccgt
     7381 gttgcaaggc atacgcggca atattcagga aacgctcacg caggaagcgc gttctttcgc
     7441 gcacgaagac ggcaggcagt ttgtcgatgc cgacaaaatt atcgccgccg cctacggttt
     7501 ggcgttttct ttggaacacg cttcggaaac gcaggaaggc gggcgcacgt tctgtatcgc
     7561 cgatttgaac attaccgtgc cgtctgaaac gcttgccgat gccaaggcaa acagccccct
     7621 gctgtacggg gaaaccgctt tgtcggatat tgtgcggcag aagacgggcg gcaatgtcga
     7681 gtttaaagac ggcgtattga cggcagccgt ccgcttccta cccgtcaaag acggtcagac
     7741 ggcatttgtc gacaacacgg tcggtatggc ggcgcaaacg ctgtctgccg cgttgctgcc
     7801 ttacggcgtg aagagcatcg tgatgataga cggcaaggcg gtgaaaaaag aagacgcggt
     7861 caggattttg agcggaaaag cccgtgaaga agaaccgtcc aaacccacgc ccgaagacat
     7921 tttggaacac aatgccgccg gcggcgatgc gggcgtaccc caagccgcag aaggcgcgcc
     7981 cgaaccggaa atcctgcatc ccgacgacgg cgagcgtgcc gataccgtta ccgtatcacg
     8041 gggcgaagtg gaagaggcgc gcgtacaaaa ccagcgtgcg gaatccgaaa ttaccaaact
     8101 ttggggagga ctcgataccg acgtgcaaaa agagttggtc ggcgaacaac gcaagtgggc
     8161 gcaggaaaaa atcagcaact gccgacaagc cgccgcgcag gcagaccggc aggaatacgc
     8221 cgaatacctc aagctgcaat gcgacacgcg gatgacgcgc gaacggatac agtatcttcg
     8281 cggctattcc atcgattagg ggcaaaccga tgaataccgt cccaaaaagc aggattcccg
     8341 tcaaaccgct gcccgaaaaa accacagacg aagccaaagt cgaaaaatgg cggcagctcg
     8401 gtgcggaaca cggtttgtcg ggcgaatggg cagttgccgc cagattgggc gaaaacggtt
     8461 ttaccgaaga acagatggaa aatatcgcca acctgttcgg cagataaaga gaaaattgac
     8521 ggaaatgccg tctgaaaccc tgttgtcggt ttcagacggc attttgacca atacggtacg
     8581 caggcgcaaa acagccgtct tttcctgcgt ttcctatgct gatgtttcaa cacacaagac
     8641 ggcacataaa gcgttgccct atgtgccgtc ctgattcgga aggggttacg cccctcccaa
     8701 atatagtgga ttaacaaaaa ccagtacggc gttgcctcgc cttagctcaa agagaacgat
     8761 tcttta
//
LOCUS       DAXHNP010000084         8696 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.084, whole genome shotgun sequence.
ACCESSION   DAXHNP010000084 DAXHNP010000000
VERSION     DAXHNP010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8696
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.084"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            191..1726
                     /locus_tag="ACFM5C_001351"
     CDS             191..1726
                     /locus_tag="ACFM5C_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6069043.1"
                     /translation="MSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGG
                     GAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVI
                     CIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAG
                     VWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWS
                     KLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAG
                     IGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAG
                     VTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFV
                     NTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFK
                     DTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQG
                     EEK"
     gene            1723..1815
                     /locus_tag="ACFM5C_001352"
     CDS             1723..1815
                     /locus_tag="ACFM5C_001352"
                     /inference="COORDINATES: protein motif:HMM:NF033493.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HFC6069044.1"
                     /translation="MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE"
     gene            complement(1851..3095)
                     /gene="lysA"
                     /locus_tag="ACFM5C_001353"
     CDS             complement(1851..3095)
                     /gene="lysA"
                     /locus_tag="ACFM5C_001353"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFC6069045.1"
                     /translation="MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAELS
                     PLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDATKTIFSGVGKNEAE
                     IEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKA
                     NKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA
                     EGIVLEHLDLGGGVGIVYQDENVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGS
                     LLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKDIEPLTANIVGPIC
                     ETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVDGNEYRLIRRR
                     ETLEQQMANELACLQAEHQNAV"
     gene            complement(3106..3276)
                     /locus_tag="ACFM5C_001354"
     CDS             complement(3106..3276)
                     /locus_tag="ACFM5C_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6069046.1"
                     /translation="MKYGVFFAAATALLLSACGYKGDLYLPKEGDTARFGAIQTGLQL
                     QNKPQSAPQTRK"
     gene            3347..3670
                     /gene="cyaY"
                     /locus_tag="ACFM5C_001355"
     CDS             3347..3670
                     /gene="cyaY"
                     /locus_tag="ACFM5C_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HFC6069047.1"
                     /translation="MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAEN
                     GTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDGRDFYDVLNEALSAASGEAV
                     EIEEL"
     gene            3697..4713
                     /locus_tag="ACFM5C_001356"
     CDS             3697..4713
                     /locus_tag="ACFM5C_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HFC6069048.1"
                     /translation="MNTRPFYFGLIFIAIIAILANYLGNTDFSHHYHISALIIAILLG
                     MAIGNTIYPQFSTQVEKGVLFAKGALLRTGIVLYGFRLTFGDIADVGLNAVVTDAIML
                     ISTFFFTALLGIRYLKMDKQLVYLTGAGCSICGAAAVMAAESVTKAESHKVSVAIAIV
                     VIFGTLAIFTYPLFYTWSQDLINAHQFGIYVGSSVHEVAQVYAIGENINPIVANTAVI
                     SKMIRVMMLAPFLLMLSWLLTRSDGVSENTSHKITIPWFAVLFIGVAIFNSFDLLPKE
                     LVKLFVEIDSFLLISSMAALGLTTQASAIKKAGLKPFVLGILTYLWLVVGGFLVNYGI
                     SKLI"
     gene            4739..5158
                     /locus_tag="ACFM5C_001357"
     CDS             4739..5158
                     /locus_tag="ACFM5C_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HFC6069049.1"
                     /translation="MAQLPLYRTAEIENFTVGTPEVLESFSKHIPYGVVFEDDGDTGY
                     FYAASQDGILDALHIYNVEDVSDKHIPNHVLILWDDACTIAALCINDYIHAVYDFVEQ
                     AGYCRNGFPEAQGEWPKVTDRVLDDELQDKILSRKPT"
     gene            5180..5686
                     /gene="luxS"
                     /locus_tag="ACFM5C_001358"
     CDS             5180..5686
                     /gene="luxS"
                     /locus_tag="ACFM5C_001358"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFC6069050.1"
                     /translation="MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPN
                     KEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVAD
                     AWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
                     LDEGLLNA"
     gene            5831..8623
                     /gene="polA"
                     /locus_tag="ACFM5C_001359"
     CDS             5831..8623
                     /gene="polA"
                     /locus_tag="ACFM5C_001359"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFC6069051.1"
                     /translation="MSNRPTLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNML
                     RRLRADYVHDYCAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGW
                     PVLVIPQVEADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDI
                     EGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAE
                     IKGKVGENLRAALQRLPLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLVVDFKR
                     WGFRTWLKEAESRMHEAADGDLFGSDSIGEQAALNAEVPSEKQPELAPTPEKLDYQAV
                     TTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTA
                     APEQIDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYII
                     ESHLGHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRL
                     EAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLEQ
                     EAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP
                     KIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIR
                     TAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITAFQNGEDVHRRTAAE
                     VFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKTFIDRYFARYPGV
                     AEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLI
                     KRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDV
                     PLVAEVGVGENWEEAH"
BASE COUNT         2028 a         2280 c         2295 g         2093 t
ORIGIN      
        1 aaatttttcg ttttcaagcc ttcaccgctt gccatcagcg ttaaattttt ttacgataag
       61 cacatagatt gtaaacaatc ggccacaagc cggtttgttt tttcagaaga cattatccct
      121 gtcagacgct atttctatat atttcgccta taatggcttg tttttaataa ataattcaag
      181 aggtatcaac gtgtctgatt ccaagacgaa agaacgcgcc acattcggca cgcgccgcgc
      241 gtttatgatt gccgccatcg ggtccgccgt cggcttgggc aatatttggc gtttccccta
      301 tattgctttt gaaaacggcg gcggcgcgtt catcctgccc tatctggtcg cgcttctgac
      361 ggcgggcatc ccgctgctgc tgctcgatta tgccatcggc caccgttacc gtggttctgc
      421 gcccttggct ttccgccgcc tcggacgatg gtttgagccg gtcggctggt ggaacgtgat
      481 gaccaatatc gtcatctgca tctattacgc ggtaattatc ggttgggcgg caagctatac
      541 ctattattcg gtcaacgccg cctggggtgc ggatccgcag ggttttttct ttaaggactt
      601 cctgcaaatg gcgggcccgg aagccttggg tttggatttt gtcggcaaag tcgccggtcc
      661 tttggcgggc gtgtgggttt ttaccgccgc cattatggcg ttgggcgtgc aaaagggcgt
      721 ggcgcgcgcc tcgtcgttct ttatgccgct gcttttggtg atgtttttga ttatggtcgg
      781 catttcacta accctgccgg gtgcggcaaa gggcttggac gcattgttta cgcccgactg
      841 gtcgaaactc gccgattcca aggtctgggt ggcggcatac gggcagattt tcttttcgct
      901 ttccatctgc ttcggcatta tggttaccta ttcttcttat ttgaagaaaa aaaccgactt
      961 gggcggaacg gggctggtgg tcggttttgc caacagcagc tttgaactgc tcgcgggcat
     1021 cggcgtgttt gccgcattgg gctttatggc gcaggcgggc ggtaaggcgg tcaacgaggt
     1081 tgcctcaggc ggcatcggtt tggcgtttat cgcctttccg accattatca accaggcacc
     1141 gatgggctgg ctgatcggca tattgttttt cggttcgctg gtattcgccg gcgttacgtc
     1201 gatgatttcc atccttgaag tgattgtggc ggcgattcag gacaagctga acatcgggcg
     1261 cgtcaacgcc acgctgctgg tctgcattcc gatgggcatt gtttccacgc tgctgttcgg
     1321 tacggcgacg gggctgccgg ttttggacgt gatggacaaa ttcgtcaaca cctacggcat
     1381 tgttgccgcc ggctttgttt atgttgccgc catcatcatc agcggcaggc tgccggaatt
     1441 acgcaagcac ctgaacgctt tgtcctccat ccgcatcggc ggcttgtgga cggtctgcgt
     1501 cgtggttacc gtcgtgatgc tcggctatat gctgtttaaa gataccagcg gcctgatgga
     1561 gaaaaattac gaaggttatc cggatggttt cctcagtatt ttcggctggg ggatgtcggc
     1621 ggcgttggtc gtgttcgggc tgctgctgtc gttgctgcct tggaaacacg gtcaggattt
     1681 caacgtcaaa gacgaacacg aacatgaaca aggagaagaa aaatgagtac ttccgccatt
     1741 gtgatgatga ttgtctcaat cgtgataatc tggggagggc tgctgctttc cctgttaagg
     1801 ctgccgaacg agtaagcctt tagagcgtta aaaatgccgt ctgaaccgct tcagacggca
     1861 ttttgatgtt cggcttgcag gcaggcgagt tcgtttgcca tttgctgttc caaggtttcg
     1921 cgccggcgga tgagtcggta ttcgttgccg tccaccaaca cctctgccgc acggttgcgc
     1981 gcgttgtaat tgctcgccat actggctccg tatgcgcccg cgctgcggat aagcagcaaa
     2041 tcgccttctt cgcaggcgat ggtgcggtct ttgccgagga agtcgccggt ttcgcaaatc
     2101 ggaccgacga tgttggcggt cagaggctca atgtctttgg tttcgaccgc ctcgatgtga
     2161 tgataggcat cataaagcgc cgggcgcatc aaatcgttca tcgccgcatc gaccatcaca
     2221 aagtttttct cttcgccgta tttgacgaat tcgacgcgtg tcagcagcga acctgcgttg
     2281 ccgaccaagc tgcggccggg ctcaagaatg agtttcagac ggcgtgtgcc gatcagtttt
     2341 tgaacggctt gggcatacgc gcccaaatca ggcacatttt cgtcttggta aacaatgccg
     2401 acgccgccgc ccaagtccaa gtgttccaac acaatgcctt cggcggcaag cgcgtcaacc
     2461 aaaatcaaaa tgcgctcgca ggcttcgacc agcgggctta agtcggtcag ttgcgaaccg
     2521 atgtggcagt cgatgccgat gattttcaaa ttgggctgtt gtgcggcatg gcggtaggct
     2581 tcgagcgcgt cggcgtaggc aatgccgaat ttgttggctt tcagacctgt ggagatgtag
     2641 ggatgggttt tcgcatcgac atcgggattg acgcgtaggg agacggacgc ggttttgccc
     2701 aaacgcgcgg caaccttttg aatacggtcg atttcgggaa tgctttccat attgaagcat
     2761 ttcacgcctg cattcagcgc gaactcgatt tccgcctcgt ttttgcccac gccggaaaaa
     2821 atcgttttcg tcgcgtcgcc gcctgccgcc aaaacgcgtg ccaattcgcc gccggacaca
     2881 atgtcaaaac cgctccccaa agaagcaaag tgtttgatga tgctcaggtt gccattggct
     2941 ttaaccgcat agcagacgag cggggagagc tcggcaaagg cagtttggta gtgttcaaat
     3001 gcttcggtca gcgcggattg gctgtacaca taaagcggtg tgccgaatgc ttcggcaagg
     3061 cgggggtagg ggacttgttc gcaaaacagg gtcatatctt cgttttcatt ttcgggtttg
     3121 tggggcggat tgcggtttgt tttgaagctg caaaccggtt tggattgcgc cgaaacgcgc
     3181 cgtatcgcct tctttgggca ggtagaggtc gcctttgtaa ccgcaggcgg aaagcaggag
     3241 ggcggttgcc gccgcaaaaa atacgccgta tttcatcggt aaacttcctt cataagcgcg
     3301 aatgtggcaa gattcggtat cttaaacaaa aaccacacaa aaagccatga tgaccgaaag
     3361 cgagtttatc cgcgcgagcg aagcattatt tgaacacatc gaagaccaaa tcgacgaaaa
     3421 cggctgggat ttcgactgcc ggtttgccgg aaacgtcctg accatcgaag ccgaaaacgg
     3481 cacgcaaatc atcgtcaacc gccacacgcc caaccaagaa ttatggattg ccgccaaaag
     3541 cggtggctac catttcgccg aacaaaacgg caaatggctg gcaacgcgcg acggacggga
     3601 tttttacgac gttttaaacg aagccctgag cgcggcttcg ggcgaagcgg tagagattga
     3661 ggaattgtga tttgggtgtt atcacggaaa gaaaaaatga acacacgtcc cttttatttc
     3721 ggacttatat ttatcgcgat tattgctata cttgctaact atttaggaaa cactgatttt
     3781 tcccatcatt atcatatcag tgctttaatt attgctatct tgctgggaat ggcaatcggc
     3841 aataccattt atccgcaatt ttcaacacaa gtggaaaaag gtgttttgtt tgccaaaggc
     3901 gcgcttcttc gcactggcat tgtgttgtat ggttttcgcc tcacttttgg cgatattgcc
     3961 gatgtaggat taaatgcggt tgtcactgat gcaatcatgc taatttcaac cttctttttt
     4021 accgcacttt taggcattcg ttatctaaaa atggataaac aattggttta tctcactggg
     4081 gcaggttgca gcatttgcgg tgcggcagcg gttatggcgg cagagtctgt taccaaagca
     4141 gaatcccata aagtttcagt ggcgattgcc atagtggtca ttttcgggac gcttgctatt
     4201 tttacttacc ccttgttcta cacgtggtca caagatttaa ttaacgccca tcaattcggt
     4261 atttatgttg gttctagtgt acacgaagtg gctcaagtgt atgcgattgg ggaaaatatt
     4321 aatcctatcg tggcgaatac tgccgtcatt tccaaaatga tccgagtgat gatgctcgcc
     4381 ccctttttat taatgctttc ttggttatta acacgtagtg atggggtatc agaaaatacc
     4441 tcacacaaaa ttacaattcc ttggtttgct gtacttttta ttggtgttgc catttttaat
     4501 tcttttgatt tattaccaaa agaactcgtg aaattattcg ttgaaatcga ttctttctta
     4561 ttaatttcat caatggctgc gcttggctta acgacgcaag caagcgcaat caaaaaggca
     4621 ggattaaaac cgtttgtttt aggaatacta acttatttat ggctagtggt tggtggattt
     4681 ttagtgaact atggaatatc aaaattaata taaaattcac taaagagagc gttacccaat
     4741 ggcacaatta cccctgtatc ggactgccga aatcgaaaat tttactgtcg gcacgcccga
     4801 agttttagaa tcattttcca aacatatccc ttatggtgtt gtctttgaag acgacggcga
     4861 cacaggctac ttctatgccg cttcgcaaga cgggatttta gatgccttgc acatttacaa
     4921 tgtcgaagat gtatccgata aacatatccc caatcatgtc ttgattttat gggatgatgc
     4981 ctgcaccata gccgcattgt gtatcaacga ctacattcat gccgtctatg attttgtcga
     5041 acaggcagga tattgccgca acggcttccc tgaagcacaa ggcgaatggc cgaaagtcac
     5101 agaccgcgta ttggacgatg aattgcagga caaaatccta tcccgaaaac ctacataacc
     5161 tactcaaaag gataacccaa tgcccctact agacagtttc aaagtcgatc acacccgtat
     5221 gcacgccccc gccgtacgcg tggcgaaaac catgaccacg cccaaaggcg acaccattac
     5281 cgtattcgac ctgcgtttct gcgtgcccaa caaagaaatc ctgcccgaaa aaggcatcca
     5341 cacgctggag catttgttcg ccggttttat gcgcgaccac ttgaacggca acggcgtgga
     5401 aattatcgac atttccccga tgggctgccg caccggtttc tacatgagcc ttatcggcac
     5461 gccttccgaa cagcaggtcg ccgatgcatg gctcgcctcg atgcaggatg tgggcaatgt
     5521 caaagaccaa agcaaaatcc ccgagttgaa cgaataccaa tgcggcactt atcaaatgca
     5581 ctcgctcgcc gaagcgcagc aaatcgcgca aaacgtgttg gcgcgcaaag tggcggtgaa
     5641 caaaaacgaa gagctgacgc tggatgaagg gctgctgaac gcctaatccg ccaaaaatgc
     5701 cgtctgaaca agggtttcag acggcatttg ccttttccgt tataatccgg ggttgtgcgg
     5761 ggtcgggttt taagccggca tcgtccttcc ctattttttc tgtcccttat cggttttaag
     5821 cgggtttttt atgtccaaca gacctacact cctcctcgtt gacggctcgt cctacctcta
     5881 ccgcgcgtat cacgcgatgg cgcagttgac cgcgcccgat ggtgcgccga cgggcgcgat
     5941 gtatggcgtg ttgaacatgc tgcgccggtt gcgggcggat tatgtgcatg attattgcgc
     6001 ggtggtgttt gatgcgaagg gcaagaattt ccgccacgag atgttccccg actacaaggc
     6061 gacgcgcccg ccaatgccgg acgatttgcg tcctcaagcg gaagccttgc cggatttggt
     6121 gcggttgata ggctggccgg tgctggtgat tccgcaagtc gaagcggatg acgtgattgg
     6181 cacgctggcg gcaatggcag gcgaagcagg ttggaatgtg gtggtgtcca ccggcgataa
     6241 ggacatggcg cagttggtga acgaacgcgt aacgctggtg aacacgatga gcggcgaaac
     6301 gctggacatt gaaggtgtga aggcgaaatt cggcgtgcgc cccgaccaaa tccgcgatta
     6361 tctcgcgctg atgggcgaca aggtggacaa cgtgccgggc gtggaaaagt gcggcccgaa
     6421 aacggcagtg aaatggctgg aagcctacgg ctcgctggcg ggcgtgatgg aacacgcggc
     6481 ggaaatcaag ggcaaagtgg gcgagaatct gcgtgccgcc ctgcagcgcc tgccgctgtc
     6541 gtatgatttg gtgacgatta aaaccgatgt ggacttgcac accgaacttt cagacggcat
     6601 cgaaagcctg cgccgtaccg cgccgaaatg ggcgcaactg gttgtcgatt tcaaacgctg
     6661 gggcttccgc acctggctga aagaagcgga aagtcgtatg cacgaagcgg cggacggtga
     6721 tttgttcggc agcgacagca tcggcgagca ggcggctttg aatgcggagg tgccgtctga
     6781 aaaacaaccc gaacttgccc cgacccccga aaaactggat tatcaagccg ttaccaccga
     6841 agcgcagctt gccgccttgt tggacaaact gtcgcaggcg gacacaatcg gcatcgatac
     6901 ggaaaccacg tcattagacg cgatgaacgc ctcgttagtc ggcatcagca tcgcgttcca
     6961 agcaggcgaa gcgatttaca tccccgtagg gcacagcctg accgctgcac ccgaacagat
     7021 tgatttgcaa gacgtattag gccgtctgaa accgcatttg gaaaaccccg ccctgaaaaa
     7081 aatcgggcaa aacctcaaat acgaccaaca cgttttcgcc aactacggca ttgccttaaa
     7141 cggcattgcc ggcgacgcga tgcttgcttc ctacatcatc gaaagccacc tcggacacgg
     7201 cttggacgaa ttgtccgaac gctggctggg cttggaaacc attacctacg aatcgctgtg
     7261 cggcaaaggc gcgaagcaaa tcagttttgc cgatgtcgcc atcggacagg cgaccgaata
     7321 cgccgcccaa gacgccgatt tcgccctgcg cctcgaagcg catctgcgtg cgcaaatgga
     7381 cgccaaacag cttgaaatgt atgaaaaaat ggagctgccc gtcgcgcagg tattgtttga
     7441 aatggaacgc aacggcgtgc aaattgatcg cgccgaactc tcccgccaaa gcgcggaact
     7501 cggcgcagag ctgatgaagc tcgaacaaga agcctatgcc gtcgcaggcc agccgtttaa
     7561 cctcaactcg cccaaacagc tccaagaaat cctgttcgac aaaatgggca ttcccaccaa
     7621 aggcctgaaa aaaaccgcca aaggcggcat ttccaccaac gaagccgtgc tcgaacagct
     7681 cgcacccgac taccccctgc ccaaaatcat cctgcaaaac cgcagcctgg cgaagctcaa
     7741 atccacctac accgacaaac tgcccgaaat gatttccccc aaagacggcc gcgtgcatac
     7801 cacctacgcc caagccgtcg ccattaccgg ccgtctcgcc agcaacaacc ccaacctgca
     7861 aaacatcccc atccgcaccg ccgaaggccg ccgcgtgcgc cgcgccttta ccgcaccgca
     7921 aggcagcgtc atcgtttccg ccgactattc ccaaatcgag ctgcgcatca tggcgcacct
     7981 ctccggcgac aaaaccctga ttaccgcgtt ccaaaacggc gaagacgtac accgccgcac
     8041 cgccgccgaa gtgttcggca ttgcccccga aaacgtctcg tccgaacaac gccgctacgc
     8101 caaaaccatc aacttcggtc tcatttacgg catgggccaa tacggcctcg ccaaatcatt
     8161 gggtatcgac aacatctccg ccaaaacctt catcgaccgc tacttcgccc gctaccccgg
     8221 cgtcgccgaa tacatgcagc gcaccaaaga acaagccgcc gcccaaggct tcgtcgaaac
     8281 cctgtttggc cgccgcctct acctgcccga catccgcaac aaaaacgcca acgcccgcgc
     8341 cggagccgaa cgcgccgcca tcaacgcccc catgcaaggc accgcctccg accttatcaa
     8401 acgcgccatg atagacgtgt cccgctggct ggtttcagac gacctgaaga gcaaactgat
     8461 tatgcaggtg catgacgaac tggtgctgga agtcgttgaa accgaactgg attttgtcaa
     8521 agaaaaactg ccgcagatta tggcgaaagt gggcggcgga ttattggatg taccgctggt
     8581 ggctgaggtt ggcgtagggg agaattggga agaggcacat tgattgaaag gtgttattat
     8641 gctatcttta tttaaataaa atttaatttt tggtatattt tttctaaatg ttccta
//
LOCUS       DAXHNP010000085         8562 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.085, whole genome shotgun sequence.
ACCESSION   DAXHNP010000085 DAXHNP010000000
VERSION     DAXHNP010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8562
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.085"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(77..595)
                     /locus_tag="ACFM5C_001360"
     CDS             complement(77..595)
                     /locus_tag="ACFM5C_001360"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase, GntK/IdnK-type"
                     /protein_id="HFC6069052.1"
                     /translation="MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRD
                     KMGAGIPLTDEDRYPWLGNLRDWMTKQAQNGANHTIVTCSALKRGYRDILRGAEGKAA
                     FIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEA
                     DILNWVASENLL"
     gene            complement(615..2000)
                     /locus_tag="ACFM5C_001361"
     CDS             complement(615..2000)
                     /locus_tag="ACFM5C_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HFC6069053.1"
                     /translation="MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSL
                     LTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIR
                     MFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFS
                     VMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVP
                     ELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTA
                     KTIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGG
                     VLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAA
                     GFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIG
                     FALSALLFAIV"
     gene            2239..3780
                     /locus_tag="ACFM5C_001362"
     CDS             2239..3780
                     /locus_tag="ACFM5C_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6069054.1"
                     /translation="MDGRRWAVWGAFALLPSAFLAVMVVAPLWAVAAYDGLAWRAVLS
                     DAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV
                     AGVGVLALFGADGLLWRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTAR
                     TLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL
                     VMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLL
                     AFAAEVLSVCCLFPLLAIVVKAWSAGESWRVLMESETWQAVWNTLRFSAAAVFAAAVL
                     GVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPF
                     VAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEF
                     AATLFLSRPEWQTLTTLIYAYLGRAGEDNYARAMVLTLLLSAFALGIFLLLDNGEGGK
                     QTETL"
     gene            3809..4408
                     /locus_tag="ACFM5C_001363"
     CDS             3809..4408
                     /locus_tag="ACFM5C_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class carbonic anhydrase"
                     /protein_id="HFC6069055.1"
                     /translation="MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARII
                     GLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQ
                     GLNAEEFLGRVRESQIPEDRIETLRYAGIDLDGWLTGFDNVEDSVRHTVDLIRNHPLM
                     PRHIAVHGLVIHPVTGKLTLVVDGSVSDGMDLSEGMETS"
     gene            4405..5010
                     /gene="nadD"
                     /locus_tag="ACFM5C_001364"
     CDS             4405..5010
                     /gene="nadD"
                     /locus_tag="ACFM5C_001364"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HFC6069056.1"
                     /translation="MKKIGLFGGTFDPIHNGHLHIARAFADEIGLDAVVFLPTGGPYH
                     KDAASASAADRLAMVELATAEDARFAVSDCDIVRRGETYTFDTVQIFRQQFPSAQLWW
                     LMGSDSLMKLHTWKKWQMLVRETNIAVAMRQGDSLHQTPRELHAWLGNALQDGSVRIL
                     SAPMHNVSSTEIRRNLAGQGVSDGIPPAAARYIREHGLYEK"
     gene            5069..5455
                     /gene="rsfS"
                     /locus_tag="ACFM5C_001365"
     CDS             5069..5455
                     /gene="rsfS"
                     /locus_tag="ACFM5C_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFC6069057.1"
                     /translation="MNEQELQDLQKMVGVAVNALEDIKAKDISVLETQDKTSLFARMI
                     IASGDSTRQVKALANNVAVDLKEAGFEILSTEGDSGEWTLVDAGDLVVHVMLPAVRDF
                     YDIDTLWGGEKPSFHAGMQKPWHAAD"
     gene            5509..5979
                     /gene="rlmH"
                     /locus_tag="ACFM5C_001366"
     CDS             5509..5979
                     /gene="rlmH"
                     /locus_tag="ACFM5C_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFC6069058.1"
                     /translation="MNITVLAVGTKMPRWVDEAVAEYAKRFGRDVAYALKEIKPEKRG
                     AGVNAAQGMAAEEKRILEAVPQGAFLVVLDERGKAPTSVELAEHLKSWRQNGEHVCFV
                     IGGADGMTDRLKQQARMMMRLSSLTLPHGMVRVLLTEQLYRAVSILHNHPYHRE"
     gene            6052..6318
                     /locus_tag="ACFM5C_001367"
     CDS             6052..6318
                     /locus_tag="ACFM5C_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HFC6069059.1"
                     /translation="MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTR
                     HQTMLINENRLSLADPRAREYLAQQMEQYFFGDGADAVQGYVPQ"
     gene            6475..7158
                     /locus_tag="ACFM5C_001368"
     CDS             6475..7158
                     /locus_tag="ACFM5C_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HFC6069060.1"
                     /translation="MQHDVYDYTAHTVSKNTVLQKTYRLLGFSFIPAAAGAALAANAG
                     FNFYAAFGSRWIGFAVVLAFFYGMIHFIEKNRYSNTGVTLLMVFTFGMGVLIGPVLQY
                     ALHIADGAKIVGIAAAMTAAVFLTMSALARRTRLDMNALGRFLTVGAVILMVAVVANL
                     FLGIPALALTISAGFVLFSSLMIMWQVRTVIDGGEDSHISAALTLFISLYNIFSSLLN
                     ILLSLNGED"
     gene            7282..7794
                     /gene="coaD"
                     /locus_tag="ACFM5C_001369"
     CDS             7282..7794
                     /gene="coaD"
                     /locus_tag="ACFM5C_001369"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFC6069061.1"
                     /translation="MLPNTPRRAVYAGSFDPPTLGHLWMIRQAQSMFDELIVAIGINP
                     DKRSTYTVAERQDMLCDITKMFPNVRTDVFENRFLVHYAREVDAGFIVRGIRSASDYE
                     YERSMRHINSDLAPEISTVFLMPPREIAEVSSTMVKGLVGPEGWTETIHRYVPQAVYE
                     KILAEHQHEN"
     gene            7826..8479
                     /locus_tag="ACFM5C_001370"
     CDS             7826..8479
                     /locus_tag="ACFM5C_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HFC6069062.1"
                     /translation="MLEILFRHQDFVAINKPGGISVHQDSGETGLARTLAIQLGVERV
                     WLLHRLDKQTSGILLFALNRESASALSGQFAGKSIKKTYLALSDRKPSKKQGWIKGGM
                     EKSRRGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLGSPIL
                     GDSLYGGTESETMFLYAWKIQFAYQNRQIEIVAPLKNEWQTENISHALEEFYMAKAG"
BASE COUNT         1851 a         2274 c         2508 g         1929 t
ORIGIN      
        1 aatgtaatcc attctgttcc cgatgtttat gccgtctgaa acccatcctg tgtcgggctt
       61 cagacggcat attgcttcaa agcaggtttt ccgaggcaac ccagttcaga atatcggctt
      121 cgaccgcttc gggcgtgccg gggttggcga ttttgacccc gtattcgcct tcgcccagtt
      181 cctcgaggat ttccagttgc gaatcgagca tccctgcttt catataatgt cctttgcgcg
      241 acatcatgcg ctcgaggttg atgtcttgcg gcggactgag gtggatgaag gcagctttgc
      301 cttcggctcc gcgcagaatg tcgcggtagc cgcgtttgag ggcggaacag gttacgatgg
      361 tgtggttcgc accgttttgc gcctgtttcg tcatccagtc gcgcagattg cccaaccacg
      421 gatagcggtc ttcatcggtc agcggaatac ccgcgcccat cttgtcgcgg ttggcttggg
      481 tgtggaactc gtcgccttcg gcatagggac attgaccgag gtgtttctgc agggacagcg
      541 cggcggtggt cttgccgcag ccgcatacgc ccataacgac aaaatgcgta gtcatttact
      601 atcctttccg tctgtcagac gatggcgaac agcagtgcgg acaaggcaaa gccgatgagt
      661 gcgatgaggg tttggttgac cgtccaggtt ttcagcgtgg tcggtacgtc catgtccaag
      721 aggcggccga ccagccagaa gccggagtcg ttgaagtggc tgcaaccgac cgaacctgcc
      781 gccgttgcca atacgataca ggcgagctgc cagtcggtaa agccggcggc ggcaacggca
      841 ggagccatca gcgcggcggc ggtggtcagg gcgacggttg ccgaaccttg cgcgatacgc
      901 agtgccaagg cgacaaggaa acagcccaaa aggacgggaa tgcccaaatc cgccatgctg
      961 tcggcgagtg ccttgccgat gccggaagcg cgcaaaacgc cgccgaacat accgcccgcg
     1021 ccggtaatca gaatcacgga acagacgggg gcgagtgcgc cgtccacggt tttttccaac
     1081 gcgctgccgc tttcgccgcg tttgcgtccc aagacaaaca gtgcgaccaa tacggaaatc
     1141 agaagggcga tcggtgtcga accgattgtt tttgccgtct gaacccaggt ttcgtccgca
     1201 cttacgagtt tttcgctgat gagggccgat acgccggtat tcaggaaaat cagcagcatg
     1261 ggaatcagca tgatggcgac gaccgttcct gctttggcag gttctttcgg caggtcgttg
     1321 tcttgcgtgc cgccgctgag cagttcggga acgggaacat ggatggtgcg ccccaacact
     1381 ttgccgagca tatagccgct gaaataccat gtgatgaagg cggtcggcag acccaaaatc
     1441 aaaacttggc cgatgttcgc gccgtaaaat tcggaagcgg caatcgggcc cggatggggc
     1501 ggcaggaaga cgtgcatgac ggaaaatgcg ccgatggagg caagcgcgaa gggcagtacg
     1561 tcctgtttca tgcgccgtgc ggtggcgaac acgatgggca gcatgacgat tagtccggca
     1621 tcgaagaaaa tcgggaagcc gaaaatcagc gaggcaacgc ccagcgcgaa cggtgcgcgt
     1681 ttttcgccga acatccggat cagcgcgtcc gccagcgact gtgcgccgcc ggatgtttcg
     1741 accaaacgtc cgagcatcgc gcccaggccg accagaagcg ccacgccgcc gagcgtgccg
     1801 ccgaagtttt tgaccagtac gtcgttgaca atgctgcctg tgggcaaacc ggttgccaaa
     1861 gccgtcagca ggctgacgat gaccagtgtc agcagcgcgt ggatgcggaa tttgacgatt
     1921 aaaatcagaa tgaggatgat tgccgccgcc gaaatgccca acagggtttg cgcggacagc
     1981 gtctgtgtcc agccgtccat ttgtaaagcc tttctctgta ataaaagtac aaaattgtca
     2041 ggttttttta agttgtgcga aaacgatagc acaaatcggg cggtaagttg tttgtctgaa
     2101 gttatattcc tgtttatttg aacgatttat ttcagacggc gggaggaagg cggatacggt
     2161 atgtagtcgg attgaaatat acggtatgtg gggcttttgg gtacaatcgc aacatcagtg
     2221 tttcaagtgg ggaaggcgat ggatggacgg cgttgggcgg tatggggtgc ttttgccctg
     2281 ctgccttcgg cttttttggc ggtaatggtc gttgcgcctt tgtgggcggt ggcggcgtat
     2341 gacggtttgg cgtggcgcgc ggtgctgtcg gatgcctata tgctcaaacg tttggcgtgg
     2401 acggtatttc aggcagcggc aacctgtgtg ctggtgctgc ctttgggcgt gcctgtcgcg
     2461 tgggtgctgg cgcggctggc gtttccgggg cgggctttgg tgctgcgcct gctgatgctg
     2521 ccttttgtga tgcccacgtt ggtggcgggc gtgggcgtgc tggctctgtt tggggcggac
     2581 ggcctgttgt ggcgcggacg gcaggatacg ccgtatctgt tgttgtacgg caatgtgttt
     2641 ttcaaccttc ctgtgttggt cagggcggcg tatcaggggt ttgtgcaagt gcctgcggca
     2701 cggcttcaga cggcacggac gttgggcgcg ggggcgtggc ggcggttttg ggacattgaa
     2761 atgcccgttt tgcgcccgtg gcttgccggc ggcgtgtgcc ttgtctttct gtattgtttt
     2821 tccgggttcg ggctggcgct gctgctgggc ggcagccgtt atgccacggt cgaagtggaa
     2881 atttaccagt tggtcatgtt cgaactcgat atggcggttg cttcggtgct ggtgtggctg
     2941 gtgttggggg taacggcggc ggcagggttg ctgtatgcgt ggttcggcag gcgcgcggtt
     3001 tcggataagg cggtttcccc tgtgatgccg tcgccgccgc agtcggtcgg ggaatatgtg
     3061 ctgctggcgt ttgcggcgga ggtgttgtct gtgtgctgcc tgtttccttt gttggcaatt
     3121 gttgtgaaag cgtggtcggc cggcgaatcg tggcgtgtgt taatggaaag tgaaacgtgg
     3181 caggcggtgt ggaatacttt gcgcttctcg gcggcggcgg tgtttgcggc ggcggttttg
     3241 ggtgtggtgt atgcggcggc ggcgcggcgg tcggcgtgga tgcgcgggct gatgtttttg
     3301 ccgtttatgg tgtcgccggt ttgtgtttcg gcgggcgtgc tgctgcttta tccgcagtgg
     3361 acggcttcgt tgccgttgct gctggcgatg tatgcgctgc tggcgtatcc gtttgtggca
     3421 aaagatgttt tgtcggcttg ggacgcactg ccgccggatt acggcagggc ggcggcgggt
     3481 ttgggcgcaa acggctttca gacggcatgc cgcatcacgt tccccctctt gaaaccggcg
     3541 ttgcggcgcg gtctgacttt ggcggcggca acctgcgtgg gcgaatttgc ggcaaccttg
     3601 ttcctgtcgc gtcccgagtg gcagacgctg acgactttga tttatgccta tttggggcgt
     3661 gcgggtgagg ataattatgc gcgggcaatg gtgttgacat tgctgttgtc ggcgttcgcg
     3721 ctgggcattt tcctgctgtt ggacaacggc gaaggcggaa aacagacgga aacgttataa
     3781 tgtgaaccct ttttcagagg acggcaaaat gagcgagttg gataacatcc ttgcccataa
     3841 ccggcagttt gtcgagtcgg gcgaatatga aaaatacttt accgacaaat accccgaacg
     3901 cgggctggca gttttgtcct gtatggatgc gcggattatc gggctgctgc ccgacgcgtt
     3961 gggtttgaaa aacggcgatg ccaagctgat taaaaatgcc ggcgcgctgg ttacgcaccc
     4021 gtggggttcg gtgatgcgga gtcttttggt tgccgtgttt gaattgaagg tcagagagat
     4081 tatggtcatc gcccatcacg attgcggtat gcaggggctg aatgccgaag aattcctcgg
     4141 gcgcgtccgg gaaagccaga ttcccgaaga ccgtatcgaa accctgcgtt atgccggtat
     4201 cgacctcgac ggctggctga ccggtttcga caacgtcgaa gacagtgtgc gccacacggt
     4261 ggaccttatc cgtaaccatc cgctgatgcc gcgccatatc gccgttcacg gactggtcat
     4321 ccatcccgtt accggcaaac tgacgctggt tgtggacggc agtgtttcag acggcatgga
     4381 cttatcggaa ggaatggaaa catcatgaag aaaatcggac tgttcggcgg cactttcgac
     4441 ccgatacaca acgggcatct ccacatcgcc cgcgcctttg ccgacgaaat cggcttggac
     4501 gcggttgttt tcctgccgac aggcggcccg tatcacaaag acgccgcctc cgcttccgcc
     4561 gccgaccgcc ttgccatggt cgaattggcg acggcagaag atgcgcgttt tgccgtcagc
     4621 gactgcgaca tcgtccgccg gggcgagact tacactttcg acaccgtcca aattttccgc
     4681 cagcagttcc cctcggcgca actctggtgg ctgatgggca gcgacagcct gatgaagctg
     4741 cacacatgga aaaaatggca gatgctcgtg cgcgaaacca atatcgccgt cgccatgcgg
     4801 cagggcgaca gcctgcacca aaccccgcgc gaactgcacg cgtggctggg caatgcgctt
     4861 caggacggca gcgtccgcat cttgtccgcc ccgatgcata atgtgtcgtc aacggaaatc
     4921 cgccgcaacc ttgccggcca aggcgtttca gacggcatcc cgcctgccgc cgcacgctac
     4981 atccgcgaac acggtttgta tgaaaaataa agtcaaatca gtaagaaacg gctataatgc
     5041 cgtctgaaaa catcccgtta ggaacataat gaacgaacaa gaactgcaag acctgcaaaa
     5101 aatggtcggg gtcgccgtca acgccctcga agacatcaaa gccaaagaca tttccgttct
     5161 cgaaacgcaa gataaaactt cgctgtttgc cagaatgatt atcgccagcg gcgacagtac
     5221 gcgccaagtc aaagcactgg ccaacaacgt tgccgtcgat ttgaaagaag ccggttttga
     5281 aatcctcagt accgaaggcg acagcggcga atggacgttg gttgatgcag gagacctcgt
     5341 tgtccacgtt atgctccctg ccgtgcgcga cttctacgac atcgacaccc tttggggcgg
     5401 cgagaaaccg agtttccacg ccggaatgca gaagccgtgg cacgcggcag actgattccc
     5461 gatgccgtct gaatgttcag acggcatttt cctgtaaggg agaaagcatt gaacattacc
     5521 gttttggcag tcggcaccaa aatgccgcgc tgggttgatg aggccgtcgc cgaatacgcc
     5581 aaacgcttcg gacgcgacgt cgcctacgca ctcaaagaaa tcaaacccga aaaacgcggc
     5641 gcgggcgtga atgccgccca aggtatggcg gcggaagaaa aacgcatcct tgaagccgtt
     5701 ccgcaaggcg cgttccttgt cgttcttgac gaacgcggca aagcgccgac ctccgtcgag
     5761 ctggcggaac acctcaaaag ctggcggcaa aacggcgaac acgtctgctt cgtcatcggc
     5821 ggcgcggacg gcatgaccga ccgcctcaaa caacaagccc gcatgatgat gcgcctgtcc
     5881 agcctcaccc tgccgcacgg catggtgcgc gtccttctga ccgagcagct ctaccgggcc
     5941 gtttccatcc tgcacaacca tccttatcat cgggaataag aaggcttttg tccgcccccc
     6001 taatcggtta aaatcacccc gttatttctg aacacagcaa aggaatccgc tatggcacgc
     6061 atggtattct gcgtcaagct caacaaagaa gccgaaggca tgaaatttcc gccgcttccc
     6121 aacgaattgg gcaagcgcat ttttgaaaac gtatcgcaag aagcgtgggc ggcgtggacg
     6181 cgccaccaaa ccatgctgat taacgaaaac cgcttaagcc ttgccgatcc gcgcgcgcgc
     6241 gaatacctgg ctcagcagat ggagcagtat ttcttcggcg acggcgcgga tgccgttcag
     6301 ggatacgttc cgcaataacg gttttccgtt ttgaacacag gctgtccgaa actgcttcag
     6361 acggccttta aaatacgctg gacaacttta tcttcacgca accggacaaa ttttgacatt
     6421 gggcaatgtt aaaatccccc attattccca accgcgcttt caggagcaga tgatatgcaa
     6481 cacgacgttt acgactacac cgcgcatacg gtttctaaaa acaccgtcct gcagaaaacc
     6541 taccgcctgc tcggattttc attcattccg gcagccgcag gcgcggcact tgccgccaat
     6601 gccggtttca atttttacgc cgccttcggt tcgcgctgga tagggtttgc cgtcgtgttg
     6661 gcgtttttct acggtatgat ccacttcatc gagaaaaacc gttacagcaa taccggcgtt
     6721 accctgctga tggtattcac attcggtatg ggcgtattga tcggccccgt gctgcaatac
     6781 gcgctccata ttgccgacgg tgcgaaaatc gtcggcattg ccgccgcgat gaccgccgcc
     6841 gtctttttaa cgatgtccgc cttggcgcgc cgaacccggc tcgatatgaa cgcgctcgga
     6901 cgcttcctga ccgtaggtgc ggtcattctg atggtcgccg tggttgccaa tctgtttttg
     6961 ggtattcccg cactcgccct gaccatttcc gccggttttg tcttgttcag ttccttaatg
     7021 attatgtggc aggtacgcac cgtcatcgac ggcggcgaag acagccacat cagcgcggca
     7081 ctgacactgt ttatctcgct ttacaacatc ttcagcagcc tgctgaacat cctgttgtct
     7141 ttaaacggcg aggattgatg ccggcaaaac gccgtccgac tatgccgtct gaaaatgctt
     7201 cagacggcat tttactttgg gcatacaata cggatgcaca cgcaccaaca cacagccgac
     7261 tatgaagccg ggaggaatca aatgttaccg aatacaccgc gccgcgccgt ttatgccggc
     7321 agtttcgatc cgcccacatt ggggcatctg tggatgatac ggcaggcgca atctatgttt
     7381 gacgaactca tcgtcgccat cggcattaac cccgacaaac gcagcaccta taccgtcgct
     7441 gaaaggcagg atatgttgtg cgatattact aaaatgtttc ccaacgtcag aaccgatgta
     7501 tttgaaaacc gatttctggt gcattacgcc cgtgaggtag atgcaggatt catcgtgcgc
     7561 ggcatccgtt ctgcttcgga ttacgaatac gaacgttcca tgcgccatat caacagcgac
     7621 ctcgcccccg aaatatccac cgtattcctc atgccgccgc gcgaaatcgc cgaagtgtcg
     7681 tccactatgg tcaaaggact ggtcgggccg gaaggctgga cggaaacgat ccaccgctac
     7741 gtgccgcaag ctgtgtacga aaaaatcctt gccgaacatc aacacgaaaa ttgaaccctt
     7801 ctatttttgc aaggcatata tggatatgtt ggaaattttg ttccgccatc aagacttcgt
     7861 cgccatcaac aaaccgggcg gcatatccgt ccaccaagac agcggcgaga ccggactggc
     7921 ccgaacactc gccatacagt tgggcgtaga gcgtgtgtgg ctgctgcacc gattggacaa
     7981 acagaccagc ggcattttac tgtttgccct caacagagaa agcgcgtccg cccttagcgg
     8041 acagtttgcc ggcaaaagca tcaaaaaaac ctatttggca ctatccgacc gcaaaccgtc
     8101 caaaaagcag ggttggatta aaggcggaat ggaaaaatcc agacgcggaa tgtggaagtt
     8161 gacgcgcaat acagaaaata tcgccgttac ccgattccac agcatcagta tcgccgaaaa
     8221 actgcggctg ttcatcctgg aaccgcatac gggcaaaacg caccaattga gagtggcgat
     8281 gaaaagtttg ggcagtccga ttctgggcga cagcttatac ggcggaacag aatccgaaac
     8341 catgtttctg tatgcatgga aaatacaatt tgcctaccaa aaccgacaaa tcgaaattgt
     8401 tgcaccctta aaaaacgaat ggcagactga aaatatctct catgcgctgg aagaatttta
     8461 tatggcaaaa gcaggttaat aaatataaat taatttataa acaatatgat aaatattttt
     8521 ataaaaattt ttcaagaaaa cggttgactg caaatctctt ca
//
LOCUS       DAXHNP010000086         8547 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.086, whole genome shotgun sequence.
ACCESSION   DAXHNP010000086 DAXHNP010000000
VERSION     DAXHNP010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8547
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.086"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(60..482)
                     /locus_tag="ACFM5C_001371"
     CDS             complement(60..482)
                     /locus_tag="ACFM5C_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HFC6069063.1"
                     /translation="MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQT
                     ACIEDGRLVLLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNT
                     LHLSKAALESFGSAAVKLEKRHPELAEALANLVRRHGA"
     gene            613..3363
                     /gene="secA"
                     /locus_tag="ACFM5C_001372"
     CDS             613..3363
                     /gene="secA"
                     /locus_tag="ACFM5C_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFC6069064.1"
                     /translation="MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQ
                     AKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEM
                     RTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISD
                     MQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDE
                     ARTPLIISGQADDNIQLYQIMNTVPPHLVRQETEEGEGDYWVDEKAHQIILSEAGHEH
                     AEQILTKMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEF
                     TGRLMSGRRWSEGLHQAVEAKEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTE
                     AFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVG
                     TTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDI
                     VLGGNLKHQTDAIRADETLSDEEKQAQIAALENGWQAEHDKVMEAGGLHIIGTERHES
                     RRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPEHGVAIEHNL
                     LTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMKEIR
                     SDVVSDLVDTYMPPDSMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNTIDGQDIKER
                     LIERIENEYAAKTELVGKQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQ
                     KNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAVVEEQPIGNIQSIHSES
                     PDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGK
                     LA"
     gene            3507..5279
                     /gene="dnaG"
                     /locus_tag="ACFM5C_001373"
     CDS             3507..5279
                     /gene="dnaG"
                     /locus_tag="ACFM5C_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFC6069065.1"
                     /translation="MIPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKT
                     PSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQND
                     NPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYA
                     PDGWQPLAQVFQPYPNTALVDTGMVIDNEGRYYDRFRHRIMFPIRNPRGQVIGFGGRV
                     LDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGY
                     GVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFL
                     FLPEEHDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTS
                     SPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQ
                     PVIPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAESIKNHAAVPETAQV
                     LEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ
                     KSLQSGLNESEKKLLLSLLTAKQN"
     gene            5466..7394
                     /gene="rpoD"
                     /locus_tag="ACFM5C_001374"
     CDS             5466..7394
                     /gene="rpoD"
                     /locus_tag="ACFM5C_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFC6069066.1"
                     /translation="MSRNQNHEEYQDDTRPLSIEEQRARLRQLIIMGKERGYITYSEI
                     NDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAA
                     LSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSI
                     AEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENED
                     DEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAI
                     ANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEI
                     TNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSS
                     EKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
                     FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLA
                     ELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE
                     VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRH
                     PTRSDRLRSFLDSEDSKL"
     gene            7541..8547
                     /locus_tag="ACFM5C_001375"
                     /pseudo
     CDS             7541..8547
                     /locus_tag="ACFM5C_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT         2389 a         2487 c         2027 g         1644 t
ORIGIN      
        1 acccattatc ctttacttct taatattaac ggatgtttac acaaattccc gtatacattt
       61 tatgcgccat gccttctgac caagtttgcc aatgcctccg ccaattcggg atgccgtttt
      121 tccaacttta ccgccgccga accgaaactc tccagcgcag ccttactcaa atgcagggta
      181 ttggttttcg gcggtttttc cggtttcggg accagcctga ccgaaacaga gcgtatcgaa
      241 gcatcaagcc ctgccaactg cggcaatacc gacggtgcaa tcattttcaa gcgcgatgcc
      301 gccatattgt ttgccgccaa aaggacaagc ctgccgtctt cgatacatgc cgtctgaaaa
      361 tgcgggtgca ggttggcagg cagcagtttt ttcacggcgg catccaaccg ccgccactgt
      421 cccgcctgtt tcaaaagtcc ggaaagcagc gcgtcccgcc tgcccaactg ttccaaattc
      481 ataaaacata cacccaaaaa gattgaaata ccgcaaacgc gcctttattt cagacggcat
      541 tagcactttg cacaaacgct tgtgttaaaa tcgcgttttc gcccactatt atatcaggcg
      601 caggaattat tcatgctgac aaacattgcc aagaaaatct tcggcagccg caacgaccgc
      661 ttgctgaaac aataccgtaa atccgttgcc agaatcaacg cgctcgaaga acagatgcaa
      721 gccctaagcg atgctgatct gcaagccaaa actgccgaat tcaaacaacg cctcgccgac
      781 ggtcagactt tggacggcat tttgcccgaa gccttcgccg tctgccgcga agcgtcccgc
      841 cgcaccctcg gtatgcgcca cttcgacgtg cagcttatcg gcggtatggt gctgcacgac
      901 ggcaaaatcg ccgaaatgcg taccggcgaa ggcaaaaccc tggtcgccac cctcgccgtc
      961 tatctcaacg cgctggccgg caaaggcgta cacgtcgtta ccgtcaacga ctacctcgcc
     1021 tcacgcgatg cgggcattat ggagccgctc tacaatttcc tcggccttac cgtgggcgtg
     1081 attatttcag atatgcagcc gttcgaccgt caaaacgcct atgccgccga tatcacctac
     1141 ggcaccaata atgaattcgg cttcgactac ctgcgcgaca atatggttac cgaccaatac
     1201 gacaaagtgc agcgcgaatt gaattttgcc gttgtcgatg aagtggattc catcttgatt
     1261 gacgaagcgc gcactccgct gattatctcc ggtcaggcgg atgacaacat ccagttgtac
     1321 caaatcatga acaccgttcc gccccacctc gtccgtcaag agacagaaga aggcgaaggc
     1381 gactattggg tagatgaaaa ggcgcaccag atcatcctga gcgaagccgg ccacgaacac
     1441 gccgagcaaa tcctgaccaa aatgggattg ctggcagaaa acgactcgct ctattccgcc
     1501 gccaacatcg ccctgatgca ccaccttatg gcggcattgc gcgcgcattc cctcttccac
     1561 aaagaccaac attacgtcat ccaagacggc gaaatcgtca tcgtggacga atttacaggt
     1621 cgtctgatgt ccggccgccg ctggtcggag ggtctgcatc aagccgtcga agccaaagaa
     1681 ggcgtggaaa tcaaacgcga aaaccaaacc ctcgcctcca tcaccttcca aaactatttc
     1741 cgcctgtaca ccaagctctc cggcatgacc ggcacagccg ataccgaagc cttcgagttc
     1801 caaagcatct acaacctcga aaccgtcatc atcccgacca accgccccgt acagcgcaaa
     1861 gacttcaacg accagatttt ccgttccgcc gaagaaaaat tcgaagccgt cgttaaagac
     1921 attgaggaat gccacaaacg cgggcagcct gttttggtcg gcacgaccag catcgaaaac
     1981 tccgaactgg tctcccacct tctgcaaaaa gccggactgc cgcacaacgt cctcaacgcc
     2041 aaagaacacg aacgcgaagc cctgattgtc gcccaagcag gcaaagtcgg cgcgattacc
     2101 gttgccacca atatggcggg acgcggtacg gacatcgtat tgggcggcaa cctgaagcac
     2161 caaaccgatg ccatccgtgc cgacgaaacc ttgagcgacg aagagaaaca ggcacaaatc
     2221 gccgcactcg aaaacggctg gcaggcagaa cacgacaaag tgatggaagc aggcggtttg
     2281 cacatcatcg gtacggaacg ccacgaaagc cgccgtatcg acaaccagtt gcgcggacgc
     2341 tccggccgtc agggcgaccc cggatccagc cgtttctacc tctcgtttga agacccgctg
     2401 ctgcgcctat tcgcactcga ccgcgccgcc gccatcctca accgtctcgc ccccgaacac
     2461 ggcgtcgcca tcgaacacaa cctgctgaca cgccaaatcg aaggggcgca acgcaaagtc
     2521 gaaggcagaa acttcgatat gcgcaaacag gttttggaat acgacgacgt tgccaacgaa
     2581 cagcgcaaag tcatttacag ccagcgcaac gaaattctga ccagcaaaga catcagcgac
     2641 ctgatgaagg aaatccgttc tgatgtcgtc agcgacctcg tggataccta tatgccgccc
     2701 gacagcatgg aagaacaatg ggacatcccg actttagaga accgtctggc tgccgaattc
     2761 agactgcacg aagacattca atcctggctg aaagcagaca atacaattga cggtcaagac
     2821 atcaaagagc gcctgatcga acgcatcgaa aacgaatatg ccgccaaaac cgaactggtc
     2881 ggtaagcagg caatggccga tttcgagcgc aacgtgatgt tgcaggtcat cgacaaccaa
     2941 tggcgcgaac acctcgccgc tatggactac ctgcgacaag gcatccacct tcgcagctat
     3001 gcccaaaaaa atccgaagca ggaatataaa cgtgaagcct ttaccatgtt ccaagacctg
     3061 tggaacggca tcaaattcca tattgcctcc ctgcttacct cggttcaaat cgaacaaaac
     3121 cctgtcgcgg tggttgaaga gcaacccatc ggcaacatcc agtccatcca ttccgaatcg
     3181 cccgatatgg aagaactttt gggtcagtcg caaaccgatt tggttaccga ggcctttaat
     3241 cccgatggaa cggatttcag ccccgaagcc ttggaagcgc ggggacaaat cgtccaccgc
     3301 aacgacccct gcccctgcgg cagcggtttg aaatacaaac aatgccacgg caaactggct
     3361 tgagcgtttg aacgcaaatg ccgtctgaac atccggtttc cggcttcaga cggcattttg
     3421 cctgaaccgc cacatccgac cgccattccg aaaaatcccg atttcgtacc gtccaaacta
     3481 aaaacaggca tccgccccgc cgaactatga ttccatccga cttcattgac gaacttctgg
     3541 ccaaaaccga tattgtcgac atcatcgacg aacaggttcc gctgaaaaaa ggcggggcga
     3601 actatatggc gtgttgcccg ttccacaagg aaaaaacgcc gtcgttttcg gtcagtccga
     3661 ccaagcagtt ttaccactgt ttcagttgcg gggcgcacgg ttcggcgatt ggttttgtga
     3721 tggaacatca ggggctgtcg tttccggagg cagtgcagtt ccttgccgac cgcgtgggta
     3781 tgattgtgcc taaagtgcgc gggcagaacg ataatcccga agtccgtgcc gaacgtaaga
     3841 aaaagcagca gacgctggaa gaaacgacag cggcggcggc tgatttttat gcgcaacagt
     3901 tgaaattcaa tccgacggcg aaggcttatt tggacaagcg cggcttgagc gcggaagtca
     3961 tcgcgcatta tggtttgggc tacgcgcccg acggctggca gcctttggcg caagtattcc
     4021 aaccgtaccc gaataccgcg ttggtggata cgggtatggt gattgacaat gaggggcggt
     4081 attacgaccg attccgtcat cggattatgt tccccatccg caatccgcgc gggcaggtca
     4141 tcggtttcgg cggcagggtg ctggacgact ccaaacccaa atatctaaac tctcccgata
     4201 cgcctttgtt tgataagggg aaaaaccttt acggattgta tgaagggcgt gctgctgtca
     4261 aggaagtggg gcggattctg gtggtcgaag gctatatgga cgtggtcgcg ctggcacagt
     4321 tcggcgtggg ctacggcgtg gcggccttgg gcacggcaac aacagcggaa cacgtcaaaa
     4381 tcctgatgcg tcaggcggac agtatttatt tctgtttcga cggcgacagc gcggggcgca
     4441 aagcggcttg gcgcgcgctg gaaaacgcgt tgccgcagtt gaaagacgac aaatcgctgc
     4501 attttttgtt cctgcccgag gaacacgacc ccgacagtta catccgtgcc tacggcaaga
     4561 cgcaatttga agacgcgctg ttgaatcaaa gcaagccgct gtcggaatat ttctgggaac
     4621 acctttcaga cgacctcaat ctcaatacgc aggaaggcaa ggcggaattg gtgaaaacca
     4681 gttcgccgct tttggcgcaa atcaccgcgc cggcattggc ttatttgtta aaacaacggc
     4741 ttagcgaact ggtcggcatc gatcctgaca atctcgcgca actgctggga caggaagcgc
     4801 cgaagcggca cgtcaaacaa aaaaactaca aactgccccc aatttccgtc aaacagcccg
     4861 ttataccgac attggtgcaa cggcaaatcc gcagcctctt gataaatccg gattgggctg
     4921 catatataga cctgcccgat tatctggcgt tggacggtga tttcgcctgc cttgccaatc
     4981 ttgccgaatc gattaaaaac catgccgccg tacccgaaac cgctcaggtt ttagagtata
     5041 tgcgcggctc gccttacgaa gaaacgataa cccgaatctt ccattcaacg caccaatcgg
     5101 aagaaatgaa cagcagcagt gaagaagatt gcgagaattt ccaaatcggc atgaaaaaac
     5161 tgctcaatga gttaaaatac agccaaatcg aagcattgaa acaaaaaagc ctgcaatccg
     5221 gcttaaatga aagcgagaaa aaacttttgc tgtcgttgct gaccgcaaaa caaaattgac
     5281 cggcggattc cgccacccgt aaacccgtta tgccgtctga aaagcactta ccccggctgc
     5341 aacaacgaca cctgcagaac acccatccca aaaagccttc agacggcatc agagtacccg
     5401 ctctgccacg ccttcaggtg cgttcaaacg caaaccgtcg gcaccttacc aacagaaagc
     5461 agacaatgtc cagaaaccaa aatcacgaag aatatcaaga cgacacccgt ccgttaagca
     5521 ttgaagagca acgcgcgcgc ctgcgtcagc tcatcatcat gggtaaagaa cgcggctaca
     5581 tcacctactc cgaaatcaac gacgccctgc cagacgatat gtctgatgcc gaccaaatag
     5641 acaatatcgt cagcatgatt tccggtttgg gcatccaagt taccgaacac gcccccgatg
     5701 cggaagacat attgttaagc gacaatgccg ccgttaccga cgatgatgcc gtcgaagaag
     5761 ccgaggccgc cctttccagt gcagattccg agttcggcag aaccaccgac cccgtccgta
     5821 tgtatatgcg cgaaatgggg caggtcgacc tgctgacccg cgaagacgaa atcatcatcg
     5881 caaaaaaaat tgaaaacgcc ctgaaaaata tggttcaggc catctccgcc tgcccgggat
     5941 ccattgcgga aatcttagaa ctcatcgaaa aaatccgcaa agacgaaatc cgcgtcgacg
     6001 aagtcgtaga agccattatc gacccgaatg aagtattgct caacgaattg ggcttggggc
     6061 acttggaaac cacagcgccc gagaaacctt ccaacgacaa ttcggacgaa aacgaagacg
     6121 acgaagaatc ggaagaagat gcggatgaaa tctcggcagc caatctcgcc gaattgaaac
     6181 aaaaagtcat cggccacttt gcccaaatcg aaaaagacta caaaaaaatg attggccgtt
     6241 tggaaaaaca ccacagccgg cacaaagact atctcgccta ccgcgacgcg attgccaaca
     6301 aactgctgga agtccgtttc gccacccggc aaatcgacag cctcagcagc agcctgcgcg
     6361 ggaaagtaga aaacatccgc aaactcgaac gcgaaatccg cgacatctgc ctcgaccgcg
     6421 tccatatgga gcgcgactac ttcatccaaa acttcctgcc cgaaatcacc aatctggaat
     6481 ggattgaaga agaaatcgcc aaaggcaggg tttggagcga cgcgctcgac cgcttccgcc
     6541 acgccatcct cgaaaaacaa accgagttgg cggatatgga aaaagaaacc cgcatttcca
     6601 tcgaagagtt gaaagaaatc aacaaaaata tggtgtcaag cgaaaaagaa accgcagctg
     6661 ccaaacagga aatgattcag gcaaacttgc gcctcgtcat ttccattgcc aaaaaataca
     6721 ccaaccgtgg cttgcagttc cttgatttga ttcaggaagg caacatcggc ctgatgaaag
     6781 cggtcgacaa gttcgaatac cgacgcggct ataagttctc cacctacgca acctggtgga
     6841 tccgtcaggc aatcacccgc tcgattgccg atcaggcgcg taccatccgc attccggtac
     6901 atatgattga aaccatcaac aagatgaacc gcatctcgcg ccaacacctt caagaaaccg
     6961 gcgaagaacc cgattccgcc aaacttgccg aactgatgca gatgcccgaa gacaaaatcc
     7021 gcaaaatcat gaaaatcgcc aaagagccga tttcgatgga aacccccatc ggcgacgacg
     7081 acgattcgca cttgggcgac ttcatcgaag atgccaacaa tgttgcgccg gccgatgcgg
     7141 caatgtacac cagcctgcac gaagtaacca aagaaatcct cgaaagcctg acaccgcgtg
     7201 aggcaaaagt cctgcgtatg cgtttcggca tcgatatgaa caccgaccac acgctggaag
     7261 aagtcggcag acagtttgac gtaacgcgcg aacgcatccg acaaatcgag gcaaaagcac
     7321 tccgcaaatt acgccatccg acaagaagcg accgtttgag aagtttcttg gacagcgaag
     7381 acagcaagct gtaaaccaaa aaaccgcagg tttcaaatac ctgcggtttt ttcttacaca
     7441 ataaacaacg cttccacata tcccacactc ctatcccgag acctttgcaa aattccccaa
     7501 aatcccctaa attcccacca agacatttag gggatttctc atgagcacct tcttccggca
     7561 aaccgcccaa gccatgattg ccaaacacat cgaccgtttc ccgctattga aattggaccg
     7621 ggtgattgat tggcagccga tcgaacaata cctgaatcgt caaaaaaccc gttaccttag
     7681 agaccaccgc ggccgtcccg cctacccgct gttgtccatg ttcaaagccg tcctgctcgg
     7741 acaatggcac agcctctccg atcccgaact cgaacacagc ctcatcaccc gcatcgattt
     7801 caacctgttt tgccgttttg acgaactgag catccctgat tacagcacct tatgccgcta
     7861 ccgcaattgg ctggcgcaag acgacaccct gtccgaattg ctcaaactga tcaaccgcca
     7921 actgaccgaa aaaggtttaa aaatagagaa agcatccgct gccgtcgttg acgccaccat
     7981 tattcagacc gccggcagca aacagcgtca ggccatagaa gttgacgaat aaggacaaat
     8041 caacggccaa accacaccga gtaaggacag cgatgcccgt tggatcaaga aaaacggcct
     8101 ctacaaactc ggttacaaac aacatacccg taccgatgca gaaggctata tcgagaaact
     8161 gcacattacc cccgccaatg cccatgagtg caaacacctg tcgccgttgt tggaagggtt
     8221 acccgaaggt acgaccgtct atgccgacaa aggctacgac agtgcggaaa accggcaaca
     8281 tctggaagaa catcagttgt tggacggcat tatgcgcaaa gcctgccgca accgcccgct
     8341 gtcggaagtg caaaccaaac gcaaccgata tttgtcgaag acccgttatg tggtcgaaca
     8401 aagcttcggt acgctgcacc gtaaattccg ctatgcgcgg tcaacctatt tcggactgat
     8461 taaagtgagt gcgcaaagcc acctgaaggc gatgtgtttg aacctgttga aagccgccaa
     8521 caggctaagt gcgcccgctg ccgccta
//
LOCUS       DAXHNP010000087         8499 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.087, whole genome shotgun sequence.
ACCESSION   DAXHNP010000087 DAXHNP010000000
VERSION     DAXHNP010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8499
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.087"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            83..1267
                     /gene="coaBC"
                     /locus_tag="ACFM5C_001376"
     CDS             83..1267
                     /gene="coaBC"
                     /locus_tag="ACFM5C_001376"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFC6069067.1"
                     /translation="MGKHILLGVTGSIAAYKSCELVRLLKKQGHSVTVVMSRSATEFV
                     SPLTFQALSGNPVLTDTHGGNGSNGMEHINLTRNADVFLIAPASMNTVAKICNGVADN
                     LLTSLAAARKCPLAIAPAMNVEMWLNPANQRNIAQLVSDGITVYMPGLGEQACGENGM
                     GRMPEPAELLDLLPDLWTPKILRGKKILITAGATFEAIDPVRGITNTSSGKMGVALAR
                     ACRAAGAEVSLIHGQLQTALPFGISDTVQAVSAEDMHRAVHRLIEKQDAFISVAAVSD
                     YKVKNRSTQKFKKDKNAKRLSIELDENPDILASIASLPNPPFCIGFAAETENVMAYAR
                     EKRIKKKIPVIVANDVSIAMGKPTNQITIIGDDGELSFPETSKDEAAMQIVERLAVYL
                     NK"
     gene            complement(1334..3490)
                     /locus_tag="ACFM5C_001377"
     CDS             complement(1334..3490)
                     /locus_tag="ACFM5C_001377"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6069068.1"
                     /translation="MPAPQPSAPYDPLTAEARALLFHTASYLKPEEQAELEKAVAYAF
                     RAHDGQTRKSGEPYITHPIAVATQLALWHMDIQGLCAGVMHDVLEDTGVTKGEMAAVF
                     GNTIAEMVDGLSKLEKLKFEDHAEHQAESFRKLILAMTKDVRVIVVKLADRLHNMRTL
                     GSMRPDKRRRIARETLEIYAQIANRIGLNNAYRELQDLSFQNLHPNRYETLKKAMDKS
                     RKNRQDVVGKVLRAFGQRLVGANIEAKIKGREKNLYGIHQKMMAKKLRFAEVMDIYGF
                     RVIVNSIPACYAALGALHTLYQPKPGRFKDYIAIPKSNGYQSLHTTLVGPYGLPIEVQ
                     IRTREMDAVAEGGIAGHWSYKSDSKTVDQAVLHTNRWLKNILDLQASSANAIEFLEHV
                     KVDLFPNEIYILTPKGKILTLPKGATPIDFAYAVHTDIGHKTVAARINNIMMPLRTKL
                     KTGDSVEIITSEHAKPNPAWLNFAVSGRARSAIRQYIKNLNRHDAVVLGESLLQKALS
                     SLLPKDVLLSDGIKEKYLADLNDKQTSFEEVLYNVGMGHTLPVYVAMHIAELAGEHFG
                     SEVRLSSIKVDGQESGHIHFAECCHPVPGDSIRLLLVKGKGMIIHRDTCPTLLKSDSE
                     QQLDADWENMNGQNYRVGLQVQSEDSHGLLALMAQAISDSGADIESVETPSKSQSGTE
                     GFVEFKFLLKVKNLNQLNQIIQNLHSIPYIRKVIRS"
     gene            complement(3582..3788)
                     /gene="rpoZ"
                     /locus_tag="ACFM5C_001378"
     CDS             complement(3582..3788)
                     /gene="rpoZ"
                     /locus_tag="ACFM5C_001378"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFC6069069.1"
                     /translation="MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNN
                     KPTVTALREIAAGHIGTELLTRNK"
     gene            complement(3847..4464)
                     /gene="gmk"
                     /locus_tag="ACFM5C_001379"
     CDS             complement(3847..4464)
                     /gene="gmk"
                     /locus_tag="ACFM5C_001379"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFC6069070.1"
                     /translation="MSAYRKGNIFIISAASGTGKTTLVSRLLANHNGLRVSVSHTTRP
                     PREGEANGVHYHFVSKEEFESLIAQEAFLEYADVFGNYYGTSAEGVNALAAAGYDVIL
                     EIDVQGAAQVRDALPEAVGIFILPPSFDVLAARLNGRGTDSQEVIQRRLAKARHEIEQ
                     SVLFDFVVVNDDLARAEEDLRHIVNACRLKRSRQLGFIADLLENS"
     gene            4592..5191
                     /locus_tag="ACFM5C_001380"
     CDS             4592..5191
                     /locus_tag="ACFM5C_001380"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFC6069071.1"
                     /translation="MALKTSNLEHAMLVHPEAMSVGALADKIRKIENWPQKGILFHDI
                     TPVLQSAEYFRLLVDLLVYRYMDQKIDIVAGLDARGFIIGAALAYHLNVGFVPIRKKG
                     KLPFETVSQSYALEYGEAAVEIHTDAVKPGSRVLLVDDLVATGGTMLAGLELIRKLGG
                     EIVEAAAILEFTDLQGGKNIRASGAPLFTLLQNEGCMKG"
     gene            complement(5237..6025)
                     /locus_tag="ACFM5C_001381"
     CDS             complement(5237..6025)
                     /locus_tag="ACFM5C_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HFC6069072.1"
                     /translation="MNPKIVFFDIDDTLYRKYTDTLRPSVKTAVAALRGKGILTALAT
                     GRSLATIPEKVRDMMAETGMDAVVTINGQFALLHGKTVREVPMDAGLMGRVCAHLDGL
                     GMDYAFVGGEGIAVSALSECVCRALQHIASDFFADKDYFSSKPVYQMLVFAEENEMPP
                     WSDIVEREGLKTVRWHEEAVDLLPAGMSKTDGIRSVVEALGLEMADVMAFGDGLNDVE
                     MLSEVGFGVAMGNGEQAVKEAAKYVCPGVDEDGVLRGLQDLGVI"
     gene            6350..7705
                     /gene="yegQ"
                     /locus_tag="ACFM5C_001382"
     CDS             6350..7705
                     /gene="yegQ"
                     /locus_tag="ACFM5C_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HFC6069073.1"
                     /translation="MKAPELLLPAGGLERMRAAYDYGADAVYAGSPRYSLRARNNEFA
                     KLDILEQGIKEAHERNKKFFLTVNTLPHNSKLKTFVSDMEPLIAMKPDALIMADPGLI
                     MTVREKWPEMPIHLSVQANTTNYWGVKFWQNIGVERIILSRELSMEEIAEIRQQCPDI
                     ELEVFIHGALCIAYSGRCLLSGYFNHRDPNQGTCTNSCRWDYKVHNATESDAGDAQLL
                     QGFNFEKAQEEANQNFEGINGQKRHPYADKVFLIEESNRPGEMMPIMEDEHGTYIMNS
                     KDLRSIEVVEKLAKIGVDSLKVEGRTKSLYYVARVAQSYRKAIDDAVAGRPFDYSLLS
                     ELEGLANRGYTSGFLERHHTQDYQNYLTGHSTAKQSQYVGHVTEIDKNGWATIEVKNR
                     FAVGDSLEIIHPNGNQTIKLEQMARKGQPVDVAPGNGIQVKIPDMQGKEKALIARVLN
                     P"
     gene            7839..8315
                     /locus_tag="ACFM5C_001383"
     CDS             7839..8315
                     /locus_tag="ACFM5C_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HFC6069074.1"
                     /translation="MLAVCQSGSAPKNAHTASAGTPAGESCKVIRDDTAGSGKNIIYR
                     CCNGQAAINAAIADGVLESGIPVSFGGGGVPVANGRNLVTRQAANGVGKSDSEACEHA
                     LINAARKFQQTAGKLGGRGVTGFHSYFDKQPLQGGQYDCQAGSFHVRVVMRANVVR"
BASE COUNT         2153 a         2334 c         2014 g         1998 t
ORIGIN      
        1 ttgtatccaa acggtatcta atgtatccac actttgttat agaatggctg ctgttttttc
       61 ttcgtaatta gaaattgtca aaatgggcaa acatattctt ttaggtgtaa cgggcagtat
      121 tgcggcgtat aagtcttgcg agttggttcg tctgctgaaa aaacaggggc attcggttac
      181 ggtggttatg agccgctcgg cgaccgagtt tgtctcccct ttaacttttc aggctttgag
      241 cggcaatcct gtcctgaccg acacgcatgg cggcaacggt tcaaacggta tggaacatat
      301 caacctgacc cggaatgcgg atgtttttct gattgcgccg gcaagtatga ataccgtggc
      361 aaaaatctgt aacggcgtgg cagataacct actgaccagt ctggcagccg cacggaaatg
      421 tccgcttgcc atcgctcccg cgatgaatgt ggaaatgtgg ctcaaccctg ccaaccaacg
      481 gaatatcgca caactggttt cagacggcat tactgtctat atgccaggct tgggcgaaca
      541 ggcttgcgga gaaaatggta tgggaaggat gccggaacct gccgaattgc tggatttgct
      601 tccggacttg tggacaccga aaattttaag gggcaagaaa atcttgatta ccgcaggtgc
      661 gacatttgaa gccattgacc ctgtccgagg catcacaaat acctccagcg gaaaaatggg
      721 cgtggctctg gcgcgggcgt gccgtgccgc cggtgcggaa gtcagcctga ttcacggaca
      781 gcttcaaacc gcgctgcctt tcggcatatc cgatacggtt caagccgtca gtgccgaaga
      841 tatgcatcgc gcagtgcatc gtttgattga aaaacaagat gcttttattt ctgttgccgc
      901 cgtctcagac tataaggtta aaaacaggag tacgcaaaaa ttcaaaaaag ataaaaatgc
      961 caaacggcta tccatcgaat tggatgagaa ccccgatatt ttggcttcta ttgcctcatt
     1021 gccgaacccg ccgttctgca tcggttttgc cgctgaaacg gagaatgtaa tggcatatgc
     1081 acgagaaaaa cgtattaaga aaaaaatacc ggtaatagtt gccaatgatg tttcaatcgc
     1141 gatgggcaaa ccgaccaacc agattaccat tatcggggac gacggggaac tatcttttcc
     1201 cgaaacaagt aaagatgaag cggcgatgca gattgttgaa aggcttgccg tatatttgaa
     1261 caaataagca attgaacgga taaaccataa agcgggttgc ctgttaatca aaaggcaacc
     1321 cgctttacct gcttcaactt ctgatgactt tgcggatata tggaatacta tgcagatttt
     1381 gaataatctg attcaattga ttcagattct tgactttcaa taagaatttg aattcgacaa
     1441 aaccttccgt tcccgactgg gatttagacg gtgtttcgac cgactcaatg tccgcaccgg
     1501 aatcggaaat cgcttgcgcc attaatgcca acaggccgtg gctgtcttcc gattggactt
     1561 gaagcccgac acggtagttc tgcccattca tattttccca gtctgcatcc agctgctgtt
     1621 cggaatcgga cttcaacaac gtcgggcagg tatccctatg gataatcatg ccttttccct
     1681 taaccaacag caaacggatg gaatcaccag gaacaggatg gcagcactct gcaaaatgaa
     1741 tatgcccgct ttcctgacca tcgactttaa tggaactgag cctgacctcg ctgccgaaat
     1801 gctcccctgc caactcggca atgtgcatgg cgacataaac aggcagggta tgccccatac
     1861 cgacgttgta cagcacttcc tcaaatgaag tctgtttgtc gttgagatcg gcaaggtatt
     1921 tttctttgat gccgtctgaa agcaggacat ctttgggcag caaactcgac agggcttttt
     1981 gtaagaggct ctctcccaaa acgaccgcat cgtgccggtt aaggttttta atatattggc
     2041 gtatggcact gcgcgccctg ccggacacgg cgaaattcaa ccatgcagga tttggtttgg
     2101 catgttcgga tgtaataatt tcgacggaat cgccggtttt gagcttcgta cgcaacggca
     2161 tcatgatatt gttgatacgt gcggcaacgg ttttgtgccc aatatcagta tgcaccgcat
     2221 aagcaaaatc gataggtgtt gcacccttgg gcaatgttag gatttttcct tttggcgtaa
     2281 ggatatagat ttcgtttgga aacaaatcta ccttgacgtg ttcaagaaac tcaatagcat
     2341 tggcactgct ggcctgcaaa tctaagatat ttttcagcca ccggtttgtg tgaagcaccg
     2401 cctgatcgac cgtcttagaa tctgatttat agctccaatg tccggcgata ccgccttcgg
     2461 caacagcatc catttcccgc gtgcgtatct gaacttcaat cggcaagccg taagggccga
     2521 ccaaagtcgt atgcagactt tgataaccgt tgcttttcgg aatagcgatg tagtctttga
     2581 accgcccggg cttgggctga taaagggtgt gcaatgcgcc gagtgcggca taacaggcgg
     2641 gaatgctgtt gacaatgacg cggaaaccgt aaatatccat aacctcggca aagcgcagct
     2701 ttttcgccat cattttctga tggatgccgt acaggttttt ttccctgcct ttgattttgg
     2761 cctctatatt cgcgcctacc agcctctgac cgaatgcgcg caagactttg ccgacaacgt
     2821 cctgccggtt cttccggctc ttgtccattg ctttttttaa agtctcgtaa cggttgggat
     2881 gaaggttttg gaacgataaa tcctgaagct cccgatacgc attattcaaa cctatacggt
     2941 tggcaatttg cgcgtagatt tcaagggttt cccttgcaat ccggcggcgt ttgtccgggc
     3001 gcatcgaacc gagtgtccgc atattatgca gacggtcggc aagtttaacg acaatcacgc
     3061 gtacatcttt ggtcattgcc aaaatcagtt tgcggaaact ctccgcctga tgctctgcat
     3121 gatcttcaaa tttgagtttt tcaagcttgg acagaccgtc caccatctcg gcaatcgtat
     3181 tgccgaacac cgccgccatt tccccttttg tcacgcccgt atcttccaat acgtcgtgca
     3241 tcacgcctgc acaaagaccc tgtatgtcca tatgccaaag ggcgagctgc gtcgcaacgg
     3301 caatcggatg cgtgatgtag ggctccccgc ttttgcgggt ttgcccgtcg tgggcgcgaa
     3361 acgcataggc gacagctttt tcaagctccg cctgttcctc gggcttgagg taggaggcgg
     3421 tatggaaaag cagggcacgc gcttcggcgg tcagggggtc gtaaggggcg gaaggttggg
     3481 gggcgggcat ttcagacggc tttcggtatg tatgtgtttt tcatttcaaa ccgtcggact
     3541 gcacggcggc aaagtgttcc ggcgtgcgtt tccggcagaa tttatttatt gcgcgtcaac
     3601 agttctgtac cgatatgtcc ggcggcgatt tcccttaagg cggtaacggt cggtttgtta
     3661 ttgcggacat cgtccacaag cggcgtgttg ccgttctcaa gctggcgggc gcggcgggcc
     3721 gctaccaatg tcaggtcaaa atggttggaa atttttccgg tacagtcttc ggtggtaata
     3781 cgtgccatat tatttgcttt ctttcaaaaa tatttaaaat aggaaactgg gtattttcgc
     3841 ggttttttag gaattttcca acaaatctgc aataaatccc agttgccgcg accttttcag
     3901 acggcaggca ttcacaatat ggcgcaaatc ctcctccgcc cgcgccaagt cgtcattgac
     3961 cacgacaaag tcgaacaata cggactgttc gatttcatgc cttgccttcg caagcctcct
     4021 ttggataact tcctgactgt ccgtcccgcg tccgttgaga cgcgcggcaa gcacatcgaa
     4081 agacggcggc aggataaaga tgccgacagc ttcaggcagc gcatctcgaa cctgcgccgc
     4141 gccctgaacg tcgatttcca aaatcacgtc ataacctgcc gccgccaacg cattcacgcc
     4201 ctccgcgctt gtgccgtaat agttgccgaa tacgtctgcg tattccaaaa aagcctcctg
     4261 tgcgataagc gactcaaact cttctttgga aacaaagtga taatgtacgc cgtttgcttc
     4321 gccttcacgc ggcgggcgcg tcgtgtgcga cacggaaacg cgcaaaccgt tatggtttgc
     4381 caacagccgc gacaccagcg tggttttgcc cgtgccggaa gcggccgaaa tgataaagat
     4441 gttgcctttt cgataagcgg acatattttt tacctgtata ttttccagcc gattgtatca
     4501 caatggacac ccagtttcct atttgccgat gcccatattt tgccgctatt gttttgattg
     4561 atttggcaag cggcaggctg acggctacaa tatggcgtta aaaacatcaa acttggaaca
     4621 cgcaatgctg gttcatcccg aagctatgag tgtcggcgcg cttgccgaca aaatccgcaa
     4681 aatcgaaaac tggccgcaaa aaggcatctt attccacgac atcacgcccg tcctgcaaag
     4741 tgcggaatac ttccgccttt tagttgattt attggtttac cgctatatgg atcagaaaat
     4801 cgacatcgtt gccggtttgg acgcgcgcgg cttcattatc ggcgcggcac tcgcctacca
     4861 tctcaacgtc ggttttgtcc ccatccgcaa aaaaggcaag ctgccttttg aaaccgtatc
     4921 gcaaagctac gcgctcgaat acggggaagc tgcggtggaa atccacaccg atgccgtcaa
     4981 acccggttcg cgcgtgctgc tggtcgatga tttggttgcc acgggcggca caatgcttgc
     5041 cgggctggaa ctgatccgca aactcggcgg agaaattgtc gaagccgccg ccattttgga
     5101 atttaccgac cttcaaggcg gcaagaatat ccgtgcaagc ggcgcgccct tatttaccct
     5161 gcttcaaaac gaaggctgta tgaagggctg aaaaccgacc ctgccgtctg aaaccggcag
     5221 ggttgttatg atgcgttcaa atcacgccca aatcttgcaa gcccctcaac acgccgtctt
     5281 catcaacgcc ggggcaaaca tatttcgccg cctctttcac tgcctgttcc ccgttaccca
     5341 ttgccacacc gaacccgact tcagacagca tttccacatc gttcaaaccg tcgccgaacg
     5401 ccatcacgtc cgccatttcc aaacccaatg cttcaaccac gcttctgatg ccgtctgttt
     5461 tcgacattcc cgcaggcagc agatcgaccg cttcctcgtg ccagcgcacc gttttcaagc
     5521 cttcccgttc cacaatatcc gaccagggcg gcatttcgtt ttcctccgca aacaccagca
     5581 tctgatacac cggtttgctt gaaaaataat ccttatcggc aaaaaaatcg ctggcgatat
     5641 gctgcaaggc gcggcacacg cattccgaca gcgcggacac ggcgatcccc tctccgccga
     5701 caaacgcata atccataccc aagccatcca aatgcgcgca aaccctgccc atcaaaccgg
     5761 catccatcgg tacttcgcgc acagtttttc cgtgcagcag cgcaaactgt ccgtttatcg
     5821 ttaccacggc atccatgccc gtttccgcca tcatgtccct gaccttttcg ggaatcgtcg
     5881 ccaaagaccg ccccgttgcc aacgccgtca atatgccttt gccgcgcaaa gccgccaccg
     5941 ccgttttcac ggaaggacgc aaggtatccg tatatttgcg gtacagcgta tcgtcaatat
     6001 cgaaaaacac gattttagga ttcatcacat tctctctcgc attcaaactg ccgcattgta
     6061 tcccaatcag gcaaatactt gataaatcct tataaatttc ccggcaaaat tgaccgcgaa
     6121 cacgaaaagg cggataatcc gcccatcctc aaaccctttt cagacggcat ttgcagcaat
     6181 gccgtctgaa acatttttac aaagcataca aatcatgttt caacacacag gacgacacat
     6241 aaagcgtcgc cctatatgtt gccctgattc ggaaagggtt acacccctcc caaataaagt
     6301 ctgattctac cgccctaaag ggcggggttt caaccgaaaa ggaaacacga tgaaagcacc
     6361 cgaactctta ttgcccgccg gcggattgga aagaatgcgc gccgcctacg attacggcgc
     6421 agatgccgtt tacgccggca gcccgcgtta ctccctgcgc gcccgcaaca acgaatttgc
     6481 caaactcgac atcctcgagc aaggcattaa agaagcgcac gagcgcaaca aaaaattctt
     6541 ccttaccgtc aacaccctgc cgcacaactc caaactcaaa acctttgttt ccgatatgga
     6601 acccttgatt gccatgaaac ccgacgcgct gattatggcg gatccgggtt tgatcatgac
     6661 cgtgcgcgaa aaatggccgg aaatgccgat ccacctgtcc gtacaagcca acaccaccaa
     6721 ctactggggc gtgaaattct ggcagaatat cggcgtcgaa cgcatcatcc tgtcgcgcga
     6781 attgagtatg gaagaaatcg ccgaaatccg ccaacaatgc cccgacatcg aactcgaagt
     6841 cttcattcac ggcgcattgt gcatcgccta ctccggccgt tgcctactct ccggctactt
     6901 caaccaccgc gaccccaacc aaggcacctg caccaactcc tgccgttggg actacaaagt
     6961 ccacaacgct acggaaagcg atgcgggcga tgcccagctt ctgcaaggtt tcaactttga
     7021 aaaagcccaa gaagaagcca accaaaactt tgaaggcatc aacggtcaaa aacgccatcc
     7081 ctacgccgac aaagttttcc tgattgaaga gtccaaccgc ccgggcgaga tgatgccgat
     7141 tatggaagac gaacacggca cctacatcat gaactccaaa gaccttcgca gtattgaagt
     7201 ggttgagaaa ctcgccaaaa tcggcgtgga cagcctcaaa gtcgaaggcc gtaccaagtc
     7261 gctctattat gtcgcacgcg tcgcccaatc ctaccgcaaa gcgattgacg atgccgtcgc
     7321 aggccgtccg tttgattaca gcctgttgag cgaactcgaa ggccttgcca accgcggcta
     7381 caccagcggc ttcctcgaac gccaccacac tcaggattat caaaactacc tgaccggcca
     7441 ttccaccgcc aaacaaagcc aatacgtcgg acacgttacc gaaatcgaca aaaacggctg
     7501 ggcgaccatc gaagttaaaa accgcttcgc cgtcggcgat tcactcgaaa tcatccaccc
     7561 gaacggcaac caaaccatca aattggaaca aatggcccga aaaggccagc ctgtcgatgt
     7621 cgcacccggc aacggcattc aggtcaaaat ccccgatatg cagggcaaag aaaaagccct
     7681 catcgcacgc gtgttgaacc cctgagccac aatgccgtct gaaccccgtt ttcagacggc
     7741 attttgttga atcttacggt acaatggcaa tgatttccca ccgcaagcaa ggatatccga
     7801 catgaaaaaa aatcctcata ctctccgccg ccgccctgat gctggcagtc tgccaatccg
     7861 gcagcgcacc taaaaacgcg cacacggcat ccgccggcac accggccgga gaatcatgca
     7921 aagtcatccg ggacgacacc gcaggaagcg gcaaaaacat catttaccgt tgctgcaacg
     7981 gtcaggcggc aataaatgca gccattgcag acggcgtatt ggaatcaggg attcccgtca
     8041 gcttcggcgg cgggggcgta ccggttgcaa acggcaggaa tctggttaca cggcaagcag
     8101 caaacggcgt tggcaaatcc gactccgagg cctgcgaaca cgccctaatc aatgccgccc
     8161 gcaaattcca gcagaccgcc ggcaaactcg gcgggcgcgg cgttaccggc ttccacagct
     8221 acttcgacaa gcagccgctg caaggcggac aatacgactg tcaggcaggc tcgttccacg
     8281 tccgtgtggt catgcgcgcc aatgtcgtcc gttaacatat cggcaatcaa aaaattaggc
     8341 tgtgttttag taatctgttg atttcaatta tttgcaaagg aaaagacaat tattttttcg
     8401 gttaggaaga gacctatcct attgaataca tttaagttaa atacgtctat caacactata
     8461 ttatagtgga ttaacaaaaa tcaggacaag gcgacgaag
//
LOCUS       DAXHNP010000088         8408 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.088, whole genome shotgun sequence.
ACCESSION   DAXHNP010000088 DAXHNP010000000
VERSION     DAXHNP010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8408
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.088"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..146)
                     /locus_tag="ACFM5C_001384"
                     /pseudo
     CDS             complement(1..146)
                     /locus_tag="ACFM5C_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(308..1240)
                     /gene="cysK"
                     /locus_tag="ACFM5C_001385"
     CDS             complement(308..1240)
                     /gene="cysK"
                     /locus_tag="ACFM5C_001385"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HFC6069075.1"
                     /translation="MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVK
                     DRIAEAMIEGAEKAGKINKNTVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKER
                     KMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTA
                     EEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGP
                     HPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSAL
                     QLAKQPENEGKLIVVLLPSYGERYLSTPLFADLA"
     gene            complement(1434..2039)
                     /locus_tag="ACFM5C_001386"
     CDS             complement(1434..2039)
                     /locus_tag="ACFM5C_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069076.1"
                     /translation="MILLHLDFLSALLYAAVFLFLIFRAGMLQWFWASIMLWLGISVL
                     GAKLMPGIWGMTRAAPLFIPHFYLTLGSIFFFIGHWNRKTDGNGWQADPEHPLLGLFA
                     VSNVSMTLAFVGICALVHYCFSGTVQVFVFAALLKLYALKPVYWFVLQFVLMAVAYVH
                     RCGIDRQPPSTFGGSQLRLGGLTAALMQVSVLVLLLSEIGR"
     gene            complement(2036..2887)
                     /gene="dapF"
                     /locus_tag="ACFM5C_001387"
     CDS             complement(2036..2887)
                     /gene="dapF"
                     /locus_tag="ACFM5C_001387"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFC6069077.1"
                     /translation="MNTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG
                     FDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVET
                     ANGVIFPKLSDNGMVTVNMGKPKFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCV
                     NMGNPHAVIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGV
                     GETQACGTGACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVF
                     EGELAYS"
     gene            3024..3320
                     /locus_tag="ACFM5C_001388"
     CDS             3024..3320
                     /locus_tag="ACFM5C_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069078.1"
                     /translation="MFRILLLLFPCAILAACTRNIPANPAVSNCAHLQNRTILYFDAH
                     GKPADGAVKGGFYKIIEIQGANRILIQDFNSTGNALGGSYVPDCRKSSLFPKNI"
     gene            3334..4002
                     /locus_tag="ACFM5C_001389"
     CDS             3334..4002
                     /locus_tag="ACFM5C_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6069079.1"
                     /translation="MNHDITFLTLFLLGFFGGTHCIGMCGGLSSAFALQLPPHINRFW
                     LILLLNTGRVSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGI
                     SSLAAKIEKIGKPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALG
                     SGSAATGGLYMLAFALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKLA
                     VLWL"
     gene            complement(4075..6195)
                     /gene="pnp"
                     /locus_tag="ACFM5C_001390"
     CDS             complement(4075..6195)
                     /gene="pnp"
                     /locus_tag="ACFM5C_001390"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFC6069080.1"
                     /translation="MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAV
                     TTNKEVKEGQDFFPLTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPL
                     FPEGFYHDIQIVAMVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGV
                     YVLNPTKAELAKSQLDLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINA
                     INEFADEVNPEVWDWKAPETNEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSA
                     VKEALITEETDTLAANEIKGIFKHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGV
                     LPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVG
                     RMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLS
                     LLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQM
                     DIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGPQELSAHAPRLFTMKINQDKIR
                     EVIGKGGETIRAITAETGTEINIAEDGTITIAATTQEAGDAAKKRIEQITAEVEVGKV
                     YEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEVD
                     DRGRVRLSIKALLDAPAREENAAE"
     gene            complement(6432..7295)
                     /locus_tag="ACFM5C_001391"
     CDS             complement(6432..7295)
                     /locus_tag="ACFM5C_001391"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFC6069081.1"
                     /translation="MSEIGLVKIYFGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPI
                     PSKGEILTQISNFWFKKLVHIMPNHFTGQTVYDVLPENEAKALEKRAVVAKKLTPVKV
                     EAIVRGYLAGSGWKDYQKTGSVCGIQLPEGMQEAQQLPEVIFTPSTKAAVGDHDENIS
                     FEECERIIGKELAAEVRAKAIQLYTEAAEYAKSRGIIICDTKFEFGLDTNGTLTLMDE
                     VLTPDSSRFWPADQYKVGTNPPSFDKQFVRDWLEQSGWNKKAPAPKVPADVIQKTVEK
                     YREALTLLTQD"
     gene            7495..8358
                     /gene="rfbD"
                     /locus_tag="ACFM5C_001392"
     CDS             7495..8358
                     /gene="rfbD"
                     /locus_tag="ACFM5C_001392"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HFC6069082.1"
                     /translation="MRILLTGSKSQLARCLRDRLPEDWETIATDSASLDITDADAVCN
                     MVKSFQPDAIVNTAAYTAVDKAEGNAAAAFAVNASAVYNLALAAHRAHARFIHISTDY
                     IFDGKGKRPYQESDFTNPSNVYGQSKTAGELLALSANPDSLILRTSWLFSEYGDNFVR
                     TMLNLARERSPLSAVHNQIGCPTYAGDLAAAIIRLLQQTSPVRGIYHYAGGKSVSWYE
                     FAQHIFQAASQQQTSFPVPELTAVSDKEYPTAAPRPAYSILDCRKIENDFGIKPSDWQ
                     KALAQVVSKLL"
BASE COUNT         2021 a         2413 c         1931 g         2043 t
ORIGIN      
        1 gtggattaac aaaaaccagt acagcgttgc ctcgccttgc cgtactatct gtactgtctg
       61 cggcttcatt gccttgtcct gatttttgtt aatccactat atttgtactg tctgcggctt
      121 cgttgccttg tcctgatttt tgttaatcca ctataaaaaa tatttccctc aagcgatgca
      181 gcgacaccaa cacctgatta aaacacaacc ggcgttttcg gcatatacgc aaaaacgcat
      241 tttccggcac ggcgttacac cgataccgaa aaatgcgtct gaatgtttcg acaatccgat
      301 taaagcatta tgccaaatct gcaaaaagtg gcgtagagag atagcgttcg ccataagaag
      361 gcagcagcac gactatcagc ttgccttcgt tttcaggctg tttggcaagc tgcaacgcac
      421 tccaaaccgc cgcaccggaa gaaataccca ccaaaatgcc ttctttttcc gctattgcgc
      481 gggcggtttc aaaagccgct tcgttcgaca ctttggtaat gctgtcgtaa attttggtat
      541 tcaaaacggt cggaataaag cctgcgccga tgccttgaat cgggtgcggg cctttttcgc
      601 cgccgctcaa tacgggtgaa gcttcaggct cgacggcaac cactttaact tcgggtttgt
      661 attttttcaa cacttcgccc acgccggtaa tcgtaccgcc cgtgccgacg ccggcaacga
      721 agacatcgac tttgccgtcc gtatcccgcc aaatttcctc ggcggttgtt ttgcggtgga
      781 cttcggggtt tgcctcattg tcgaactggc gcggcataaa ataagtgtcg ggatgcgcgt
      841 ccaccaagga tttcgctttg gcaatcgcgc ccgccatacc ttcggcggca ggggtcagaa
      901 tcagctccgc accaaacgcg cgcaacagca ttttgcgctc cttactcatg ctttccggca
      961 tggtaatcgc cagcttgtag ccgcgtgcgg cacataccat tgccaaaccg acacccgtat
     1021 tgccgctggt tgcttcgaca atgacggtgt ttttgttgat tttgcccgct ttttcggcac
     1081 cctcgatcat tgcttcggca atgcggtctt tgacgctgct gcctggattg aaaaattcca
     1141 gtttcacggc aacctccgcc ttcaaacctt cggtcagacg gttcagtttg accaaaggcg
     1201 tgttgccgat tagttcggtg atgctgtttg caattttcat cttctgctcc tgaataataa
     1261 ggtttcgaca gtaaggcgca atccccatag gcatcctgtc cgattgcagg ggatttgcgc
     1321 cgaaacataa acaaatttcg gatatggctt tatcctaaac ctatgccgcc taaaaaacca
     1381 atatccaaaa tttctttctt tataactttt tgttccgata cggccgcacc gtattatctt
     1441 ccaatttctg aaagcagcag caccagtacc gagacctgca tcaacgctgc cgtcaacccg
     1501 ccgagtcgca gctgcgagcc gccgaacgtt gacggcggct gccggtctat accgcagcgg
     1561 tggacatagg caaccgccat cagcacaaac tgcaacacga accaataaac cggcttcagc
     1621 gcataaagtt tgagcagtgc cgcaaacaca aacacttgaa ccgttcccga aaagcaataa
     1681 tgcaccaacg cacatattcc gacaaaagca agcgtcatcg atacattact gacggcaaac
     1741 agcccgagca gaggatgttc ggggtctgcc tgccatccgt ttccatccgt tttccggttc
     1801 caatgcccga tgaaaaaaaa tatgctgccc aaagtcaggt aaaaatgggg gatgaacaag
     1861 ggcgcggcgc gggtcattcc ccatatgccg ggcatcagct ttgcccccaa aaccgatatg
     1921 cccagccaca gcataatact cgcccaaaac cattgcaaca ttcctgcgcg gaatatcaga
     1981 aacagaaaaa ccgccgcata cagtaaggca gacaaaaaat ccaaatgcag caaaatcatg
     2041 aatacgccaa ctcgccttca aacaccgttt ccgcagggcc ggtcatcatc acatcgccgc
     2101 cgcaggccca ttcgatatat aaagttccgc ccggcaaaat cacttctacc gttttccctt
     2161 catccaacaa ccccagacgg atacccgcca ccacagccgc acacgcgccc gtaccgcacg
     2221 cttgggtttc gcccacgccg cgctcgaaca cgcgcaaacg aatcgcggtt cggctgacaa
     2281 tctgcataaa gccgacgttg acgcgttcgg gaaactgcct gtgcggttcg ataagcgaac
     2341 cggtttcgcg caccggcgcg cattctacgt catcgaccac aatcaccgca tgggggttgc
     2401 ccatattgac gcagctgaca ggctgaatgc cggattcgag atgcaccccg taaatacagg
     2461 catcatcccc ctcgcccgat tcggggacaa acggtatttc agacggcata aacttcggtt
     2521 tgcccatatt gaccgtaacc ataccgttat cggacaattt cggaaaaata acgccatttg
     2581 ccgtttcaac acaaatttct ttcttatcgg tcaaaccctt gtctgcaaca aaacgggcaa
     2641 aacaacgcgc tccgttgccg cattgcccga cctcgctgcc gtcggcattg aaaatacggt
     2701 aacggaaatc cacgccttcg gtttccgaac gcccgaccac caaaagctgg tcgaagccca
     2761 cgccccggaa acggtccgcc catgccgcaa tcggcgcgtc ctcgggggta aaatcctgac
     2821 tgaccgcatc aatcaccata aaatcgttgc ccaaaccgtg cattttggta aatttcaaag
     2881 tgttcatatt gttccgaaat cccgtatcgt ctgttgcttc cgaatccgaa atcccccgca
     2941 ccgaagggaa atgcttccat ctcccgccgc ctgaggatta aaatcagcca ttatactgtt
     3001 tgttacccct tacaagaaac accatgttcc gcatattact gttgcttttc ccttgtgcaa
     3061 tccttgccgc ctgcacccga aacataccgg caaacccggc cgtttcaaat tgcgcgcatc
     3121 ttcaaaaccg caccatcctg tattttgacg cacacggcaa acccgccgac ggcgcagtaa
     3181 agggcggatt ttacaaaatt atcgaaatac agggtgcaaa ccgcatcctt attcaagact
     3241 ttaacagcac gggcaatgcc ctcggcggat cctatgtgcc ggactgccgc aaatcatccc
     3301 ttttcccgaa aaatatttga cttcaaactg cctatgaacc acgacatcac tttcctcacc
     3361 ctgttcctgc tcggcttctt cggcggaacg cactgcatcg gcatgtgcgg cggattaagc
     3421 agcgcgtttg cgctccaact ccccccgcat atcaaccgct tttggctgat cctgctgctt
     3481 aacacaggac gggtaagcag ctatacggca atcggcctga tactcggatt aatcggacag
     3541 gtcggcgttt cactcgacca aacccgcgtc ctgcagaata ttttatacac ggccgccaac
     3601 ctcctgctgc tctttttagg cttatacttg agcggtattt cttccttggc ggcaaaaatc
     3661 gagaaaatcg gcaaaccgat atggcgaaac ctgaacccga tactcaaccg gctgttaccc
     3721 ataaaatcca tacccgcctg ccttgcggtc ggaatattat ggggttggct gccgtgcgga
     3781 ctggtttaca gcgcgtcgct ttacgcgctg ggaagcggta gtgcggcaac gggcgggtta
     3841 tatatgcttg cctttgcact gggtacgctg cccaatcttt tggcaatcgg cattttttcc
     3901 ctgcaactga aaaaaatcat gcaaaaccga tatatccgcc tgtgtacggg attatccgta
     3961 tcattatggg cattatggaa acttgccgtc ctgtggctgt aagccccatt cattcccgat
     4021 acccgtaaaa aataccgtct gaaacctgtt cagacggcac tttcacccta agcgttactc
     4081 ggcggcattt tcctcacggg caggcgcgtc cagcagggct ttgatggaca gacggacacg
     4141 gcctctgtcg tccacttcca atgctttcac gttcaccacc tgaccgactt gcaggtagtc
     4201 gccgacattg cgtacgcgct cgtgggcgat ttggctgatg tgtaccaaac cgtctttgcc
     4261 cggcatcacg ctgacaatcg cgccgacatt gttgtcgagg attttcacca cagtgccttc
     4321 gtacactttg cccacttcca cttcggcagt aatctgctcg atgcgttttt tcgccgcatc
     4381 gccggcttct tgagtggttg cggcaatggt aatcgtaccg tcttcggcaa tattgatttc
     4441 cgtaccggtt tcagcggtaa tcgcacggat ggtttcaccg cccttaccga taacttcgcg
     4501 gattttgtct tggttgattt tcatcgtgaa caagcgtggc gcgtgtgcgg acagctcttg
     4561 cgggcccgca acggcggctt tcatctgatc caagatgtgc agacgcgctt ctttggcctg
     4621 tgccaaagcg atttgcataa tttctttggt aatgccttgg attttgatgt ccatttgcag
     4681 cgcggtaacg ccttcggtcg taccggccac tttaaagtcc atatcgccca agtggtcttc
     4741 gtcgcccaaa atgtcggtca ggacggcaaa tttgttgcct tccagaatca gacccatcgc
     4801 gataccggca acgtgtgctt tcaaaggcac gccggcagac agcaggctca ggcagccgcc
     4861 gcagacggaa gccatagagg aagagccgtt ggattcggta atttcggaga ccacgcgcat
     4921 ggtgtagctg aaatcttcag gtttcggcaa tacggccaac aatgcacgtt tagccaaacg
     4981 gccgtgaccg atttcacggc gtttcggtgc gcccatgcgg cccacttcgc cggtagagta
     5041 cggcggaaag ttgtagtgca gcataaagcg gtcggtgtat tcgccggaca gcgcgtcgat
     5101 gatttgctcg tcgcgcgaag tacccaaagt tgcaacggcc aaagcttggg tttcgccacg
     5161 ggtaaacaat gcagaaccgt gcgtgcgcgg caatacgccg gtttgaatgt tcagcggacg
     5221 aacagtgcgg gtgtcgcgac catcaatacg cggttggccg tctaaaattt ggctgcggac
     5281 aacatcggct tccaagtgtt tgaaaatgcc tttgatttcg ttggctgcca aagtgtcggt
     5341 ttcctcggta atcaaggctt cttttacagc actccaagct tcgtccaatt tggcagaacg
     5401 cgcttgtttt tgacggattt tgaatgcttc tttaatggtt tcaccggcaa tttcgcgtac
     5461 ttttgcaacc aattcttcat tggtttcagg tgctttccaa tcccaaactt ccggattgac
     5521 ttcatcggca aactcattga tggcgttaat ggccacttgc atttgatcgt gaccgtaaac
     5581 caccgcgccc aacatcacgt cttcgggcag gattttggct tcggattcca ccatcaacac
     5641 ggctttggaa gtaccggcga ccaccaagtc caattgcgat ttcgccaatt cggctttagt
     5701 cgggttcaaa acgtacacgc cgtttacata accgacgcgt gccgcaccaa tcggaccggc
     5761 aaacggtacg ccgctcaaca ccagcgcggc agacgcgccc aacattgcag gaatgtcgga
     5821 atcgatttcg ggatcgacgg acacgaccat cgctacgatt tggatgtcgt ggtagaaacc
     5881 ttcggggaac agcggacgaa tcggacggtc gatcagacgg ctggtcagga tttctttttc
     5941 gctttgtttg ccttcgcgtt tgaagaaacc gccgggaatt ttgcctgcgg cgtaagtgcg
     6001 ctcgaggtaa tcgacagtca gagggaagaa gtcttggcct tctttcactt ctttgttggt
     6061 ggtaacggca accaaaacca cggtgtcgcc catagagact ttaacggcag cggcggcttg
     6121 gcgggcaatt tcgccggttt ccaaagtaac ggtgtggttg ccgtattgga aagttttaac
     6181 gtgtttgtcg aacattattg ttcctttcaa aataccgcac tgctaaaaca ctaataatgc
     6241 acactaaaat ccgaatgtgc atagttaggg tttcagaccg tgcggcaggt tgtaaacaag
     6301 ctttcagacg acatttcgga cgctgaaagc aattccaaat tataaaggca accatcatta
     6361 aaatccagta ttgatacaat aaaaaggccg tctgaaccat atttctttca gacggccttc
     6421 aaacttaaaa atcaatcctg agtcagcaaa gtcaatgctt cccgatactt ctcgacagtt
     6481 ttctgaatca catcggcagg cactttcggc gcaggggctt ttttgttcca accgctttgt
     6541 tccagccagt cgcggacgaa ttgtttgtca aaagacggcg gattggtgcc gactttgtat
     6601 tggtcggcag gccaaaaacg gctcgaatcg ggagtcaata cctcatccat cagcgtcagc
     6661 gtaccgtttg tatccaaacc gaattcaaat ttggtatcgc aaatgatgat gccgcgcgat
     6721 ttggcatatt ccgccgcttc tgtataaagc tgaatcgctt tggcgcgcac ttccgccgcc
     6781 aattcttttc cgataatgcg ttcgcattct tcaaagctga tgttttcatc gtgatcgccg
     6841 actgcggctt tggttgaggg cgtaaaaatc acttcaggca gttgttgcgc ttcctgcata
     6901 ccttcaggca gttgaatacc gcaaaccgag ccggtttttt gataatcttt ccaaccgctg
     6961 cctgccagat aaccacgcac aatcgcctct actttcaccg gagtgagctt tttagccacg
     7021 acggcgcgtt tctctaaagc tttggcttcg ttttcaggca aaacatcgta aaccgtttga
     7081 ccggtaaagt ggttgggcat aatatgcacc agttttttaa accaaaaatt ggaaatctgc
     7141 gtcagaatct cccctttgct cggaatcggg tcgtccaaaa tcacatcgaa tgcagacagg
     7201 cggtcggaag cgaccatcag catacgttta tcgtcgattt catataaatc gcgcactttt
     7261 ccaaaataga tctttaccaa accaatctca ctcatttcgc ccccccctga aaatatcttg
     7321 aaaataccga cccgacaccc gacaggtttg aatcacaaac caatattcta gccgaagtcg
     7381 gcgcaaaaca atacccatgg cacaaaaaac caacccgtca accgtcggca aagttttggc
     7441 actataatac cgacagcaag tcctacaata cacttttacc aaaggaaata cctcatgaga
     7501 atcctattga caggctcgaa aagccaactg gcacgctgcc tgcgcgaccg tcttccggaa
     7561 gactgggaaa ccattgcgac ggattccgca tccctagaca ttaccgatgc cgatgccgtc
     7621 tgcaacatgg tcaaaagttt ccaacccgac gccattgtca acacggctgc ctatactgcc
     7681 gtcgacaaag cggaaggcaa tgcggcagcg gcatttgccg tcaatgcttc cgccgtttac
     7741 aaccttgcct tggcagcaca tcgcgcccat gcccgattca tccacatctc aaccgactat
     7801 atctttgacg gtaaagggaa aaggccctat caggaaagcg actttaccaa tccttccaat
     7861 gtatacggac aatccaaaac cgcaggcgag ctgctcgcac tgtctgccaa tcccgacagc
     7921 cttatcctgc ggacttcttg gctgtttagc gaatacgggg acaactttgt ccgcacgatg
     7981 ctgaaccttg cgcgggaacg ttccccgctg tccgccgtcc acaaccaaat cggctgcccg
     8041 acctatgccg gcgatttagc tgccgccatc atccgccttt tgcagcaaac gtcgcccgtg
     8101 cgcggcattt accactacgc cggcggcaaa tccgtatcct ggtatgaatt tgcccaacat
     8161 attttccaag cggcatcgca acagcagaca tccttccccg ttcccgaatt gactgccgtt
     8221 tcagacaagg aatatccgac cgccgccccc aggcccgcat acagcatttt ggactgccgc
     8281 aaaatcgaaa acgacttcgg catcaaaccg tcagactggc aaaaagccct tgcgcaggtc
     8341 gtttccaagc tgctctgatg ccgcccgcct ctccgtttcc gccgtcaagc accgccttgg
     8401 cggttttc
//
LOCUS       DAXHNP010000089         8355 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.089, whole genome shotgun sequence.
ACCESSION   DAXHNP010000089 DAXHNP010000000
VERSION     DAXHNP010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8355
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.089"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            27..1142
                     /gene="asd"
                     /locus_tag="ACFM5C_001393"
     CDS             27..1142
                     /gene="asd"
                     /locus_tag="ACFM5C_001393"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFC6069083.1"
                     /translation="MKVGFVGWRGMVGSVLMQRMKEENDFAHIPEAFFFTTSNVGGAA
                     PDFGQAAKTLLDANDVAELAKMDIIVTCQGGDYTKSVFQALRDSGWNGYWVDAASSLR
                     MKDDAIIVLDPVNRNVIDNGLKNGVKNYIGGNCTVSLMLMALGGLFQNDLVEWATSMT
                     YQAASGAGAKNMRELISGMGAVHAQVADELADPAGSILDIDRKVSDFLRSEDYPKANF
                     GVPLAGSLIPWIDVDLGNGQSKEEWKGGVETNKILGRSDNPTVIDGLCVRVGAMRCHS
                     QAITLKLKKDLPVSEIEAILAGANDWVKVIPNEKEASIRELTPAKVTGTLSVPVGRIR
                     KLGMGGEYISAFTVGDQLLWGAAEPLRRVLRIVLGSL"
     gene            complement(1371..1901)
                     /locus_tag="ACFM5C_001394"
     CDS             complement(1371..1901)
                     /locus_tag="ACFM5C_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6069084.1"
                     /translation="MQGFELEDLTLWLIRDAGEDQMWIDRWAVSYPVVQMSEASAGQS
                     IGEWQAGLQTAFERIQGRHIAVVAHGAGAAAFLAWLYRADILTRKKIANIILVPQHPD
                     IFSDDAEHTFQRVRCPCRAALVVSEHGDVPRDWAQKQADTWNARLLVSPHSGSLNGML
                     GGWQWGMKLMQEMLLA"
     gene            complement(1912..2256)
                     /locus_tag="ACFM5C_001395"
     CDS             complement(1912..2256)
                     /locus_tag="ACFM5C_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069085.1"
                     /translation="MLPNKVLGKYDWNVDGKTGIGAAWVVAAFVLPMSVWAIFMLARM
                     QGWLAPTKANPIWALVWLLICLPCLLIASKCLGWKGWRRVVNIFVCLTVCAILSVPAS
                     LLIAFTLRDLLK"
     gene            complement(2243..3022)
                     /locus_tag="ACFM5C_001396"
     CDS             complement(2243..3022)
                     /locus_tag="ACFM5C_001396"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6069086.1"
                     /translation="MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADL
                     SADMKNPHGMHGYWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGR
                     LSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK
                     NWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWRTLYPDNPGYTWWSNRGQAYAKDVGW
                     RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYAAE"
     gene            complement(3193..4614)
                     /gene="cysS"
                     /locus_tag="ACFM5C_001397"
     CDS             complement(3193..4614)
                     /gene="cysS"
                     /locus_tag="ACFM5C_001397"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFC6069087.1"
                     /translation="MTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVM
                     VVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADA
                     LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSL
                     DDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFG
                     DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFI
                     RVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTR
                     LYTTLKNTPAAEFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQL
                     AGCLKALGGIIGLLQRDPIEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRI
                     RDLLNEHKIILEDNAGGTTWRRG"
     gene            complement(5302..6351)
                     /locus_tag="ACFM5C_001398"
     CDS             complement(5302..6351)
                     /locus_tag="ACFM5C_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6069088.1"
                     /translation="MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLL
                     KILYSLLEVTSNTKNRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKL
                     QNGTTHSSLNFSSNSSSQVNVQSIGLKENEYTPTPIFLPSRELITLCPWFTSLYQNQS
                     IPFEETWFDTCMQLNHPLAKGPRETKIRELLEPIENAMGGKVSEEQGRFYLSLTNTGG
                     KIEAPLVAEGLRKFVMIARLIATGALLDKGYLFWDEPEANLNPKLIKVAARIIWSLSQ
                     QGIQVFIATHSLFLLRELELLKLENNTDLPVRFFSLIASDDGTKVEQGNSINDLNTLI
                     LLDENIMQADRYLNI"
     gene            complement(6434..7588)
                     /gene="obgE"
                     /locus_tag="ACFM5C_001399"
     CDS             complement(6434..7588)
                     /gene="obgE"
                     /locus_tag="ACFM5C_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFC6069089.1"
                     /translation="MKFIDEAKIEVAAGKGGNGATSFRREKFVPRGGPDGGDGGKGGS
                     VWAEADENTNTLVEYRFVKRYQAKNGEKGHGSDRYGAGADDIVLKMPIGTLIRDLDTD
                     EIVADLTYHGQRVCLAKGGKGGLGNIHFKSSVNRAPKQSTPGEEGETRSLQLELKVLA
                     DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENHSFVMADIPGLI
                     EGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETANPAEEALAIINELRKYDEELYD
                     KPRWLVLNKLDMLDEEEAQARSAAFLEAIGWDYPKPDDRFQFDMETPRLFQISALTHQ
                     GTQELVHQINQYLTEKKRIEAEKAEAEKAAANVEIIEQQPKTDTGVFKPE"
     gene            complement(7881..8355)
                     /locus_tag="ACFM5C_001400"
                     /pseudo
     CDS             complement(7881..8355)
                     /locus_tag="ACFM5C_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1941 a         2144 c         2071 g         2199 t
ORIGIN      
        1 acgatttttc ctcaaggagc aacacaatga aagtaggttt cgtcggctgg cgcggtatgg
       61 tcggttcggt tttgatgcag cgtatgaaag aagaaaacga cttcgcccac attcctgaag
      121 cgtttttctt taccacttcc aacgtcggcg gcgcagcccc tgatttcggt caggcagcca
      181 aaacattgtt ggatgccaac gatgttgccg aattggcaaa aatggacatc atcgttacct
      241 gtcagggcgg cgattacacc aaatccgtgt tccaagccct gcgcgacagc ggctggaacg
      301 gctactgggt tgacgcggca tcttctctgc gcatgaaaga cgacgcgatt atcgtcctcg
      361 accctgtcaa ccgcaacgtt atcgacaacg gcctcaaaaa cggcgtgaaa aactacatcg
      421 gcggcaactg caccgtctcc ctgatgctga tggctttggg cggcctgttc caaaacgatt
      481 tggtcgaatg ggcaaccagc atgacctacc aagccgcttc cggcgcaggt gcgaaaaaca
      541 tgcgcgaact catcagcggt atgggcgcgg ttcacgccca agtggcggac gaacttgccg
      601 atcctgccgg ctcgattctc gacatcgacc gcaaagtatc cgatttcctg cgcagcgaag
      661 actatccgaa agccaacttc ggcgtaccgc tcgccggcag cctgattccg tggattgacg
      721 tggatttggg caacggccag tccaaagaag aatggaaagg cggcgtggaa accaacaaaa
      781 tcctcggccg cagcgacaat ccaaccgtga ttgacggcct gtgcgtccgc gtcggcgcga
      841 tgcgctgcca cagccaagcc atcactctga agttgaaaaa agacctgccc gtttccgaaa
      901 tcgaagcgat tttggcaggc gcgaacgact gggtgaaagt catccccaac gaaaaagaag
      961 ccagcatccg cgagctgacc cccgccaaag ttaccggcac gctgtccgtc cccgtcggac
     1021 gcatccgcaa actgggtatg ggcggcgaat acatcagcgc gttcaccgtc ggcgaccagc
     1081 tcttgtgggg cgcggccgag ccgctgcgcc gcgtattgcg tatcgtgttg ggcagcctgt
     1141 aagccctgtt tgaatggaaa tgccgtctga agcctgtttc agacggcatt ttccttgcaa
     1201 ccctgccgga taacgccctg ccggcactgc cgacgtaaaa aataaaggat tccatttccg
     1261 gcggtatgcg gcagcccgac tttatccgaa cctgatgcgc ctgcacgtca atgaaaacag
     1321 cccgatatgc ggacttcctg ctacagccga aattccgata aggcaagcgt tcacgccagc
     1381 aacatttcct gcatcagctt cataccccac tgccagccgc cgagcatacc gttcaaactg
     1441 cccgaatgcg gggaaaccaa caggcgcgcg ttccacgtat ccgcctgttt ttgcgcccaa
     1501 tctcgcggca catccccgtg ttcggacacc accaatgcgg cacggcaggg acagcggacg
     1561 cgttggaaag tgtgttccgc atcgtcggag aaaatatcgg gatgctgcgg tacaaggatg
     1621 atgttggcaa ttttcttccg tgtcaggatg tctgcgcggt acagccacgc caagaatgcg
     1681 gccgcacccg cgccgtgtgc gacaacggcg atatgcctgc cctgtatccg ttcgaatgcc
     1741 gtctgaagcc ctgcctgcca ttcccctatg ctttgaccgg ccgatgcttc ggacatctgc
     1801 acgacgggat aactgaccgc ccaacggtct atccacatct gatcttctcc ggcatcgcgt
     1861 atcagccaaa gcgtcaaatc ttcgagttcg aaaccctgca taccgccgcg cctatttcag
     1921 caggtcccgg agggtaaagg cgatgagcag cgaagcgggg acgctcaata tggcgcagac
     1981 ggtcaggcag acaaaaatat tcaccacccg ccgccagcct ttccaaccca aacatttgga
     2041 cgcaatcagc aggcagggca ggcaaatcag cagccacacc aacgcccata tcgggtttgc
     2101 cttggtcggc gcaagccagc cctgcatccg cgccagcata aatatcgccc acaccgacat
     2161 aggcagcaca aatgccgcca cgacccatgc cgcgcctatt cctgtttttc cgtccacatt
     2221 ccaatcatat ttacccaaaa ctttattcgg cagcatagtc atactccacg accagcggcg
     2281 catggtcgga aaatttttcg tctttataaa catgtgcgga cacggctttg gcggcaagtt
     2341 cgggcgtaac catctgataa tcgatgcgcc acccgacatc tttcgcatac gcctgtccgc
     2401 ggttgctcca ccaagtgtag cccggattgt cgggataaag cgtgcgccac atatccgtcc
     2461 agcccagcgt atggatgacc ttgcctatcc actcgcgctc ttcgggcagg aagcccgaat
     2521 ttttctgatt gcccttccag tttttcaggt cgatgttttg gtgggcgatg ttccagtcgc
     2581 cgcagacgac aatgtcgcgc ccttcgtttt tcatcgcttc gagcataggg taaaacgcat
     2641 cgaggaaacg gtatttcacc tgctggcgtt cttctgcgct gctgccgctg ggcaaataaa
     2701 gcgaaataac gctcaacctg ccgaaatcgc aacgcacaaa ccgcccttcc ctgtcgaatt
     2761 cttcaatgcc cataccgatt tgcacattgt cgggtttgcg tttgctgtac accgccacgc
     2821 cgctgtaacc acgcttctcg gcgcaatgcc aatagccgtg catcccgtgc ggatttttca
     2881 tatcggcaga caaatcagcc tcctgcgctt tgagttcctg cacgcagaca atgtccgcgc
     2941 ccgatgcggc gatatattcg taaaaacctt ttttgtaggc ggagcggatg ccgttgacgt
     3001 tggcggaaat gattttaagc ataataaaaa taagttctca caatgttccc atacacaaag
     3061 cagcacccgg tgcgccgccc ggcatttccc attcggccct gcctgctgaa aacggcgggg
     3121 cttcaagcgg gaaatgccgt ctgaaaacgg aaaaagagca aaaggcggta cttttgccct
     3181 ttccgataca gttcaaccgc gccgccaagt cgtaccgccg gcgttgtctt ccagaatgat
     3241 tttgtgttcg ttcagaaggt cgcggatgcg gtcggactct gcccagtttt tatccgcgcg
     3301 cgcttgtttg cgccgtgcga ttaagtcttc gatttcttcg ttggagaggc cgtctgaagc
     3361 cgcgcctcct tgcaggaact caatcggatc gcgttgcagc agtccgatga tgccgcccaa
     3421 ggctttcagg cagccggcga gctgtgcgtc attggttttg ttcacttcgc ctgccagttc
     3481 gaacaacacg gcaaccgctt cgaccgtacc gaaatcgtcg ttcatggcgg cgtagaagcg
     3541 gcgggtgtag ccgttggcgt tttcggataa atcaaactca gccgccggcg tgtttttcaa
     3601 ggtggtgtac agacgggtca gcgcaccttt tgcatcgtcc aaatgcgcgt cggaatagtt
     3661 caacgggctg cggtagtggg cgcgcaggat gaagaagcgc acgacttcgg ggtcgtattg
     3721 tttcaacact tcgcggatgg tgaagaagtt gcccagtgat ttggacattt tttcgccgtc
     3781 cacgcggata aagccgttgt gcagccaata tttgacgtgg ctggcgatgc tttgcccgtg
     3841 gtgggtttgc gcgtgatgat gaccgcaggt atgccccgtc gcgccgacgc tttgggcaat
     3901 ttcgttttcg tggtgcggaa actgcaaatc cgcgccgccg ccgtggatgt cgaaggtatc
     3961 gccgaacagg ttttcactca tggcagagca ttcaatgtgc caacccggac ggccgttgcc
     4021 ccacgggctt tcccacgccg gttcgcctgc tttcgccgct ttccacaata caaaatcaag
     4081 cggatcgcgt ttgaaaccgt ccacttccac gcgctcgccc gcgcgcaggt cgtccaatga
     4141 tttgcccgat aattgtccgt aagccgaaaa ctcgcgcacg gcgtagtaaa cgtcgccgtt
     4201 tgcggcagga taggctttgc cgttttgaat cagggtctca atcatggcaa tcatctgcgg
     4261 aatgttttct gttgccttcg gctcaatatc cggacgcaac acacccaaag catcggcatc
     4321 ttcgtgcata gcctgaatga aacgcgcagt cagctcgccg atggtttcgc cgttttcagc
     4381 cgcacgggcg atgattttgt cgtcgatgtc ggtgatattg cgcacataag tgagcggata
     4441 accgcactcg cgcaaccaac gggcaatcat gtcgaacacc accatcacac gggcatggcc
     4501 taagtggcaa tagtcgtaaa cagtcatgcc gcaaacgtac atacgcacgt tttcagggtc
     4561 gatgggggca aagggttctt tttggcgggt aagggtgttg tagatggtgg tcatgggatt
     4621 atggattaat ctttgttgct cggatgataa tttctgttct gttcctgtag atacggacca
     4681 aggaacatta cgtagttgcg gattattaat atggctgata tttgtgaaaa ttggttctgc
     4741 ataacagttt gcaaaatttt ttgtaaattc tgataattta aacttatctt ttaataagtt
     4801 tgctaaatct gatgacgagg gataaagttt acttcttata ctaggcattt caatatgaag
     4861 gactattttt atttcgttac aatctaaagc caagcgagaa aaatcttttt cttcctgttt
     4921 ttctgcttta aatttagcag aaaccaatcc tgccaatgaa tctcgaattt ttcttgcgat
     4981 taaatatggt aggtcagaaa gtttttcatc tattgattgg gcatttggct caagcccaag
     5041 tcggtaataa tctttaattt cgattagcca aagtgtcgac tcatgaaggg ctattatatc
     5101 tacacctgag ctgccattat cgtcatctac actttgattt atcccgttct ttcccttttc
     5161 atttgtatca attttattac gtaaattaca actgttctga aaaattttat aatgttccca
     5221 ttcgtcatac ttggtaacgt aataatcttc aggaaaagca aaggttaatc tcttttctgt
     5281 gattgtagtc atagcttaac ctcaaatatt cagatacctg tctgcctgca taatgttttc
     5341 atctaacaat atcaatgtgt tcaaatcatt aatactgttc ccttgctcca cttttgttcc
     5401 atcatcggaa gcaatcaacg agaaaaaacg tacaggtaaa tccgtgttat tttcaagctt
     5461 caaaagttcc aattctctca ataagaataa agagtgtgtt gcaataaaaa cctgaatacc
     5521 ctgttgagat aaagaccaaa taatacgggc agccactttg atcaatttag gattcagatt
     5581 agcttccggt tcatcccaaa atagatagcc tttatccagc aatgcccctg ttgcgattaa
     5641 ccgggcaatc atgacaaatt tccgcaaacc ctctgctacc aaaggtgctt caatcttacc
     5701 gcccgtattt gtcagcgata gataaaacct tccttgttct tcagatactt ttccgcccat
     5761 cgcgttctca ataggttcga gcaattctcg aatttttgtt tctctggggc ctttggcaag
     5821 cgggtgattt aattgcatac aggtatcaaa ccaagtttct tcgaaaggga tgctttggtt
     5881 ttgatacaaa gaagtgaacc aagggcaaag tgtaattaat tcgcggctgg gtaagaagat
     5941 aggtgtcgga gtatattcat tttctttcaa tccgatgctt tgaacattga cttgcgatga
     6001 tgagttactg gaaaaattca gactactatg cgtagtgccg ttttgcagtt ttaaaacgat
     6061 ttccgtacgc ccgcgcccct gcaaacgttt gctcaacctg cccaaggaat cgggacggaa
     6121 aacattcagt aatttatcgg caaaactttt ttgcaattct gttttcagta atctgttttt
     6181 ggtgttagat gttacttcta gcaggctgta taaaattttt aacaaatgtg ttttgccaca
     6241 accgttttcg gcaacaataa cattgagatt ttcagaaaat tcaaaagtat cgtttggaag
     6301 aacggtaaag tttgtcaact caagcgactg gatatattgg ttagatgaca tttttaatcc
     6361 atttcaatct tgctttaaaa ttgtttcaaa caaccttttg tagaacaaat atcgtctgaa
     6421 accctttctt ttttcactcc ggcttaaaca cgcccgtatc cgttttaggc tgctgttcga
     6481 taatttcaac atttgccgct gctttctccg cttcggcttt ttcagcttcg atacgttttt
     6541 tctcggtcag gtattggttg atttggtgta ccaattcctg cgtgccttgg tgggtcagcg
     6601 cgctgatttg gaagaggcgc ggggtttcca tgtcaaattg gaaacggtcg tcgggtttcg
     6661 ggtagtccca gccgatggct tcgaggaagg cggcgctacg cgcttgggct tcttcttcat
     6721 cgagcatatc gagtttgttc agcaccagcc agcgtggttt gtcgtagagc tcttcgtcgt
     6781 atttgcgcaa ttcgttgatg atggcgaggg cttcttcggc ggggttggcg gtttcgtcga
     6841 agggtgccaa atcgacgacg tgcagcaata atccggtgcg cgataagtgt ttgaggaaac
     6901 gatgccccaa acccgcgcct tctgccgcgc cttcaatcag gccggggatg tcagccatca
     6961 cgaagctgtg gttttcgtcg atgcgtacca cgcctaagtt tggatgcagg gtggtgaagg
     7021 ggtagttggc gattttgggg cgtgcggcgg atacggcggt aatcagggtg gatttgccgg
     7081 cgttgggcat acccaataag ccgacatcgg cgaggacttt gagttcgagt tgcagggagc
     7141 gggtttcgcc ttcttcgccg ggcgtggatt gttttggggc gcggttgacg gaggatttga
     7201 agtggatgtt gcccaagccg cctttgccgc ctttggcaag gcagacgcgc tgaccgtggt
     7261 aggtgaggtc ggcaacgatt tcgtcggtgt cgaggtcgcg gataagggtg ccgatgggca
     7321 ttttgaggac gatgtcgtcc gcacctgcgc cgtaacgatc ggagccgtgg cctttttcgc
     7381 cgtttttggc ttggtagcgt ttaacgaagc ggtattcgac gagggtgttg gtgttttcgt
     7441 cggcttccgc ccagacgcta ccgcctttgc cgccgtcgcc gccgtccggg ccgccgcgcg
     7501 gtacgaattt ttcgcggcgg aaactggttg cgccattacc gcctttgcct gcggcgactt
     7561 cgatttttgc ttcgtcgatg aatttcattc aatgctcttg tttgttggtt tcaaatgggg
     7621 ggttcagacg gattaccgtg tgttttgatg ccgtccgaac agaatttcgg acgctattat
     7681 aagggataag cggtatttca acacgccgta cccaaactat ttgttccgcc catcttaatg
     7741 aatttttaag caaatcttca gcctgcaaac aaaattatgt ccaacttctt tggtacaatc
     7801 gcgccttttt gacattccga cccgacggaa tgtccgttca aaccgttaca tataataagt
     7861 tttggggctg tcctagataa ctaggataaa ctcggtttta ctaattgttt taaaatggaa
     7921 caagaacttt tatctcactg ttgttaaaac gccattcgca ctcctttaaa tacagctcaa
     7981 aatgcgcttt gggaatgccg ttaaacttgc gtaaatgacg ttttgcctgg ttccaaaagt
     8041 tctcaattcc attaatatgg ttttgtcgtt cagcaaaatg tgtgctgtga ttgatacgaa
     8101 aacgaagttt cagcgaagct aaaatggcta aattcgcgca catctaatac atcatagcta
     8161 cgataacaat ccgtataaac aatgctgtca ggtttcactt gttcacggat aataggaaat
     8221 aaagtagcgg tttgaattcg gtactgtaac cgtataaacc ttaccatttc gcttcaaaag
     8281 accgaatacg gcgactttac cggcagcacc gcgaccgcgt ttgcctttgc gttgtccgcc
     8341 aaaataactt tcatc
//
LOCUS       DAXHNP010000090         8244 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.090, whole genome shotgun sequence.
ACCESSION   DAXHNP010000090 DAXHNP010000000
VERSION     DAXHNP010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8244
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.090"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(93..653)
                     /gene="sodC"
                     /locus_tag="ACFM5C_001401"
     CDS             complement(93..653)
                     /gene="sodC"
                     /locus_tag="ACFM5C_001401"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC"
                     /protein_id="HFC6069090.1"
                     /translation="MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPV
                     NGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAG
                     GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
                     TGGDNHSDHPAPLGGGGPRMACGVIK"
     gene            complement(1070..2110)
                     /gene="mutY"
                     /locus_tag="ACFM5C_001402"
     CDS             complement(1070..2110)
                     /gene="mutY"
                     /locus_tag="ACFM5C_001402"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFC6069091.1"
                     /translation="MNTPIPFSERLIRWQKQHGRHHLPWQVKNPYCVWLSEIMLQQTQ
                     VATVLDYYPRFLEKFPTVQTLAAAPQDEVLSLWAGLGYYSRARNLHKAAQQVVRQFGG
                     TFPSERKDLETLCGVGRSTAAAICAFSFNRRETILDGNVKRVLCRVFARDGNPQDKKF
                     ENSLWTLAESLLPSENADMPAYTQGLMDLGATVCKRTKPLCHQCPMADICEAKKQNRT
                     AELPRKKTAAEVPTLPLYWLIIRNRNGAILLEKRPAKGIWGGLYCVPCFESLNGLSDF
                     AAKFSLTMADMDEQTALTHRLTHRLLMITPFEGQMPSESPSDGIWIKPAHLKDYGLPK
                     PLEIYLNGNRLE"
     gene            2273..3314
                     /locus_tag="ACFM5C_001403"
                     /pseudo
     CDS             2273..3314
                     /locus_tag="ACFM5C_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
     gene            complement(3337..3555)
                     /locus_tag="ACFM5C_001404"
     CDS             complement(3337..3555)
                     /locus_tag="ACFM5C_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069092.1"
                     /translation="MPSEALSSLRRHFAAWRRSRHTRQHHSDILPLKCPSAFRIIKIT
                     FSSFDSSRTAHTTRLKKCRLKRIQTASA"
     gene            complement(3570..4208)
                     /locus_tag="ACFM5C_001405"
     CDS             complement(3570..4208)
                     /locus_tag="ACFM5C_001405"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HFC6069093.1"
                     /translation="MSKLTPREILTAGAVVPVMAIDDLSTAIDLSHALVEGGIPTLEI
                     TLRTPVGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAISPGLHESLAKAG
                     RNSGIPLIPGVATPGEIQLALEHGIDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTG
                     GISLATAPDYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAALKPKA"
     gene            complement(4389..6224)
                     /gene="edd"
                     /locus_tag="ACFM5C_001406"
     CDS             complement(4389..6224)
                     /gene="edd"
                     /locus_tag="ACFM5C_001406"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HFC6069094.1"
                     /translation="MNTTPIHSKLAEITGRIIERSRPTREKYLAKIRSAKQMGRLERN
                     QLGCSNLAHGYAAMPKSIKIEMLQETVPNLGIITAYNDMVSAHQPFKDFPDQIKDEAQ
                     KNGATAQVAGGTPAMCDGITQGYAGMELSLFSRDVIAMSTAVGLSHQMFDGSLFMGVC
                     DKIVPGLMIGALSFGHIPGIFVPAGPMSSGIGNKEKARTRQLFAEGKVGRNELLKSEM
                     GSYHSPGTCTFYGTANSNQMMMEMMGVHLPAAAFVHPYTDLREALTRYAAGHLARGIK
                     NGTIKPLGEMLTEKSFINALIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISSI
                     IPLLIRVYPNGKADVNHFTAAGGLPFVIRELLNAGLLHDDVDTVVGHGMRHYTKEPFL
                     IDGKLEWREAPETSGNDDILRKADNPFSPDGGLRLMKGNIGRGVIKVSAVREGCRIIE
                     APAIVFNDQREVLAAFERGELERDFVCVVRYQGPRANGMPELHKLTPPLGILQDRGFK
                     VALLTDGRMSGASGKVPASIHMTPEALMGGNIAKIRTGDLIRFDSVSGELNVLINETE
                     WNAREVESIDLGANQQGCGRELFANFRSMTSSAETGAMSFGGEFA"
     gene            6740..8185
                     /gene="zwf"
                     /locus_tag="ACFM5C_001407"
     CDS             6740..8185
                     /gene="zwf"
                     /locus_tag="ACFM5C_001407"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HFC6069095.1"
                     /translation="MSTQTNFDLVLFGATGDLAMRKLLPCLYQAHVAGLLHPEGRILG
                     VSRSELDTEGFLAKVETSSKIHVKENFSDEAWASFVERFAYLKVDVTQPDDFAALGDL
                     VKARKETDNVVIYLSTAPKFFAQTCENLAKIGLNADNVRVVLEKPLGTDLASSQQINT
                     DVARYFKEGQIYRIDHYLGKESLQNLLALRFANVMFEPLWNNKYIESVQLTIAEQLGV
                     EERGEFYDITGALRDMVQNHLMQMLCMTAMEAPASLDADAVRDEKVKVIKSLKPLTVE
                     SVNENVVRGQYTAAKGMNGYLEEINVPQDSFTETYVAIKAEIENERWKGVPFYLRTGK
                     RMAGKVAEIVLNFKDLNSHIFEGSRTAPNRLVIELQPYESVRLYTQMKTPGAGNKVET
                     VPLATDLGKALESRRAEAYERLLLDVINGKLALFNRRDELEAAWEYVMPILENWTNNT
                     TPPHGYGAHSWGPEAARELLARDGHKWHEEQ"
BASE COUNT         1927 a         1974 c         2269 g         2074 t
ORIGIN      
        1 cactatactg ctgaagtcgt gaattaaatg ctaaatatct agcaaaaaag tgcggtcaaa
       61 atttaccgca cttttcgttt cgaacaatcg aattatttaa tcacgccaca tgccatacgt
      121 gggccgccac cgccaagtgg agctggatga tcggagtgat tatcaccacc cgtgtggatc
      181 ataatagagt gaccgcgaac atcatctaaa tgtttaagac gtggtgctaa aacaggattt
      241 gttgctgtgc catcatgcaa tacagttaat gcaggtaaat cacctaagtg tgcatcatct
      301 tgccatgggt aaccatgttg ttttgcacct ttaggatccc agtgaccgcc tgcgcctaaa
      361 ccagctgtca atttaccttc tttttctttt ggctcacagc ttgggttttc atggatgtgg
      421 aaaccatgta agccttcgct taatccttgt aaatcagggg taaacacaag accatagtta
      481 gattcagtaa tagtcactgt acccacatct ttgttaccgt ttactggatc aagttgttgc
      541 actttcactt caatagaagc acctttaggt atcgtattat gctcgtgtgc ttgcgcaaca
      601 ccaactgaac atactgcact aaccgctagt gctaataagg ttttcatatt cattgcaatc
      661 tcctttattg cagtaaaaac tcgcgactat tttagtcaat tttgttttaa aagccgataa
      721 atttttacga aaattttaca ttaattgtta tttgcagaaa attagaaccc gttatcacgt
      781 cttggataaa tgccaaaacc attgtgattc agagaattaa aaagaaaaat ttcggaatcc
      841 tcatcctttt ctgaaacctg attgcggtat ccatggcttt gtctttgtca tttaagtttg
      901 tgttcatgtt tttgaccttc tttgcttttt aaatcctttt taaattgccg acttctaccg
      961 ttccaaatgt cccatttgaa cattatcccg ccgcctaaaa tacgacccaa attcatcggt
     1021 tgttcttgct gcgatacctg caaacaacag ttcaatgggt ttattttgtt tattctaacc
     1081 tattaccgtt taaataaatt tccaaaggct tgggcaaacc gtaatctttc aaatgcgccg
     1141 gctttatcca aatgccgtct gaagggcttt cagacggcat ttgtccttca aacggcgtaa
     1201 tcatcagcaa ccggtgcgtc agccggtggg tcagggcggt ttgttcgtcc atatctgcca
     1261 tggtcaggga gaatttggcg gcaaagtcgg aaagcccgtt caaactttca aaacacggca
     1321 cgcaatacag cccgccccaa atgcctttgg cggggcgttt ttccagcaaa atcgcgccgt
     1381 tccggttgcg gataatcagc cagtaaagcg gcagggtcgg tacttcggcg gcggtttttt
     1441 tgcgcggcag ctcggcggtg cggttttgct ttttcgcttc gcagatgtcc gccatcgggc
     1501 attggtggca caagggtttc gtccgtttgc acacggtcgc gcccaaatcc atcaaacctt
     1561 gtgtataggc aggcatatcg gcgttttcag acggcagcag gctttcggca agtgtccaga
     1621 gcgagttttc aaattttttg tcctgcggat tgccgtcgcg ggcgaacacg cggcagagta
     1681 cgcgtttgac gttgccgtcc aaaatggttt cgcggcggtt gaaggagaag gcgcaaatgg
     1741 cggcggcggt gcttctgcct acgccgcaga gggtttccaa gtctttgcgc tccgacggaa
     1801 acgtgccgcc gaattgcctg acgacttgtt gcgcggcttt gtgcaggttg cgcgcgcggc
     1861 tgtaatagcc caagcccgcc cacaacgaca acacttcgtc ttgcggcgcg gcggcaagcg
     1921 tctgaacggt cgggaatttt tctaagaagc gcggatagta gtccaacacg gtggcgactt
     1981 gcgtttgctg gagcatgatt tcggaaagcc agacgcaata agggtttttg acctgccaag
     2041 ggaggtggtg gcgaccgtgt tgtttttgcc agcggatgag ccgttcggag aaggggatgg
     2101 gtgtgttcat taatatcaat cggtggtttt atttatattt aaaacggtat gttattgtat
     2161 aacattgtga aaataattct tattgactta ttttttgtag gggcatataa ctcatataaa
     2221 gaaactttat tgcggtattg aaattattta tcaacaagca aggagtatca gcatgaaagc
     2281 aatggtttat cacggcgcaa acgacatccg ttttgaagaa aaaccccgtc cgcagattat
     2341 cgatccgacc gatgcggtgg tgaaaatcgt caaaaccacg atttgcggta ccgatttggg
     2401 tatttggaaa ggcaaaaaaa cccgaagtcg ccgacggtcg tattctcggt catgaaggca
     2461 tcggtattgt agaagaagtc ggcgatgctg taaaaaacat caaagtcggc gataaagtca
     2521 ttatttcatg cgtcagcaaa tgctgtactt gcgacaactg caaaatccaa ctttattcgc
     2581 attgccgcaa cggcggctgg attttgggct acatgattga cggcacgcag gcagaatacg
     2641 tccgcacgcc ttatgccgac aacagcctcg tgccgctgcc cgacaacgtc aacgaagaag
     2701 tcgccctgtt gttgagcgac gctttgccga ccgcacacga aatcggcgtg caatacggcg
     2761 atgtcaaacc cggcgacacc gtattcatcg caggtgccgc tcctgtcggt atgtccgcct
     2821 tgttgaccgc ccaactgtat agccccgccg ccattatcgt gtgcgatatg gacgaaaacc
     2881 gtttgaaact ggcgaaagag ttgggcgcga cccataccat cagccccgct tccggcgacg
     2941 tctccaaaca agttttcgcc atcgtcggcg aagacggcgt agattgtgcc atcgaagcgg
     3001 tcggtatccc tgcaacttgg aatatgtgcc aagacatcgt gaaacccggc ggccatatcg
     3061 ccgttgtcgg cgtacacggt caatccgttg atttcaaact ggaaaaactg tggattaaaa
     3121 agcttgccat cactaccggc ctggtaaacg ccaataccac cgaaatgctg atgaaggcaa
     3181 tttccagcag ctccgtcgat tacaccaaaa tgttgaccca ccgtttcaaa ttcagcgaat
     3241 tggaaaaagc ctacgacgtg ttcaaacacg ccgccgaaaa tcaagcgatg aaagtggttt
     3301 tggaagcgga ttaatcggcg ttgaatcagt tgttttttaa gcggatgccg tctgaatgcg
     3361 tttcagacgg cattttttca gccgcgtagt atgggctgtc cggctgctgt cgaatgaact
     3421 gaacgttatt tttattatgc ggaaggcgga tgggcatttt aggggcagta tgtcggagtg
     3481 gtgctgccgt gtatgccgac tgcgccgcca agcggcaaaa tgccgtctga gactggaaag
     3541 ggcttcagac ggcattttta cgatgcggtt caggctttgg gtttcaatgc cgccgcttct
     3601 ttggcgagac gggtgatggt gtcccagtct ttgtttttca cggcttcttt cggcgtcagc
     3661 catgagccgc cgacgcacag gacgttgggc agtgccaagt aatcgggcgc ggtggcgagg
     3721 ctgatgccgc ctgtcgggca gaagcgaaca tcggcgtaag ggccgtacag ggctttgagc
     3781 atggctttgc cgccaacgac ttcggcaggg aagagtttga gggtgtcgat gccgtgttcc
     3841 aaagccagtt ggatttcgcc cggggtggca acaccgggaa tcagggggat gccgctgttg
     3901 cggccggctt tggcgaggga ttcatgcagc cccgggctga tggcgaaaac cgcgcctgcg
     3961 tcttcgacgg ctttaagctg ttcgggattg gttaccgtac ctgcgccgac gatggcgttg
     4021 ggcacttctt tggcaatcag gcggatggca tcgaggccga caggggtgcg cagggtgatt
     4081 tcgagggtag ggatgccgcc ttcgacaagg gcgtgggaca aatcgatggc ggtgcttaag
     4141 tcgtcaatcg ccattaccgg cacaactgcg ccggcggtca aaatttcgcg gggggtcagt
     4201 ttggacattt cggttctccg ggtggaatgg ggtattttat taagatggga caggtcgtag
     4261 gtcggattca agaaaccgac atcttggacg gctgtgtcgg attcgagaat ccaacctacg
     4321 tctatcttaa aacacttgaa taatttttca gacggccttc ggtctgaaaa ggccgtctga
     4381 aacgcgcatc aggcaaattc gccgccgaag ctcatcgcgc cggtttcggc gctgctggtc
     4441 atgctgcgga agttggcgaa aagttcgcgg ccgcagcctt gttggttcgc gcccaagtcg
     4501 atgctttcga cttcgcgggc attccattcg gtttcgttaa tcaggacgtt gagttcgccg
     4561 ctaacggagt cgaagcggat caggtcgccg gtacggattt tggcgatgtt gccgcccatc
     4621 agggcttcgg gcgtcatgtg gatggaggcc ggaactttgc cggatgcgcc ggacatacga
     4681 ccgtcggtca gcagtgccac tttgaagccg cggtcttgca ggatgcccaa aggcggggtc
     4741 agtttgtgca attcgggcat accgttggca cgcgggcctt ggtagcggac gacgcacaca
     4801 aaatcgcgtt ccaactcgcc gcgttcaaac gcagccaaca cttcgcgttg gtcgttgaac
     4861 acgatggcag gcgcttcaat aatgcggcag ccttcgcgca cggcggacac tttaatcacg
     4921 ccacgtccga tgttgccttt catcaggcgc agaccgccgt cgggggagaa cgggttgtca
     4981 gctttacgca ggatgtcgtc gttgccgctg gtttcggggg cttcgcgcca ttcgagtttg
     5041 ccgtcgatga ggaaaggctc tttggtgtag tggcgcatac cgtgtccgac gacggtatcg
     5101 acatcgtcgt gcaacaggcc tgcattcagc aattcgcgga taacgaaagg cagtccgccc
     5161 gctgcggtaa agtgattcac gtcggccttg ccgttcggat aaacgcggat gagtagtggg
     5221 atgatggagg aaatttcgtc gaagtcgtcc cagttcaaaa tcacgccggc cgcacgcgcc
     5281 atagcgacga ggtgcatggt gtggttggtc gaaccgccgg ttgccatcag gccaatcaag
     5341 gcgttgataa aggatttttc ggtcaacatt tcgcccaaag gtttaatcgt gccgtttttg
     5401 atgccgcgcg cgaggtgtcc ggcggcgtag cgagtcagcg cttcgcgcag gtcggtgtaa
     5461 gggtggacga aggcggcggc aggcaggtgc acgcccatca tttccatcat catttggttg
     5521 gagtttgccg tgccgtagaa agtgcaggtg cccgggctgt ggtaagaacc catttcgctt
     5581 ttcaaaagtt cgttgcgtcc gaccttgcct tcggcgaaaa gctggcgggt gcgggctttt
     5641 tctttgttgc cgataccgct ggacatcggg cctgcgggga cgaagatacc cggaatatga
     5701 ccgaacgaaa gcgcgcctat catcaaaccc ggaacgattt tgtcgcatac gcccataaac
     5761 aggctgccgt caaacatttg atgcgacagc ccgacggcgg tactcatggc aatcacgtcg
     5821 cgggagaaca gcgacagttc catgccggcg tagccttgcg tgatgccgtc gcacatggcg
     5881 ggcgtgccgc cggcgacttg ggcggtcgcg ccgtttttct gcgcttcgtc tttgatttgg
     5941 tcagggaagt ctttaaacgg ctggtgtgcg gaaaccatgt cgttgtaggc ggtgatgatg
     6001 cctaagttgg ggacggtttc ctgaagcatt tcgattttga tacttttagg catggcagca
     6061 tagccgtgtg ccaagttgct gcagccgagc tggttgcgct ctaagcgtcc catttgtttg
     6121 gcactgcgga tcttcgccag atatttttca cgcgtcggac ggctgcgttc aataatgcgc
     6181 ccggtgattt cggcgagttt ggagtggata ggagtagtgt tcacggtcgg tctcctgtcg
     6241 gaacgggggg tattggggat ttgtttgtgc gtttctgatt tttgtatcgg gtattcagac
     6301 ggtaagtata gtggattaac aaaaaccagt acggcgttgc ctcgccttgc cgtattatct
     6361 gtactgtctg cggcttcgtc gccttgtcct gatttttgtt aatccactat attttaaaag
     6421 gtatgccgtc tgaaagtggg aagcgggtgt tattatagta caaaatttgt aattttgtta
     6481 caaaaaaatc agacatcgaa aagaaatttg atttaaatcg cagaatcttt cgattgttgt
     6541 aacggaatag gggaaacctg cccgattttt ggactaggtc aaataaattg taaaaatggg
     6601 aatagacaaa aagtgtagcg gtgtgtagta ttactactca ttatgccgcc tgcctttgtt
     6661 tccgatattg cgatgcagcg tgatggggaa aacaggtttc aaacggcatc gaaaaattct
     6721 ttcctgacga gataatacga tgagtacaca aacaaatttt gatttggtgt tgttcggtgc
     6781 gaccggcgat ttggcgatgc gcaagctgtt gccctgtctg taccaggcgc atgttgccgg
     6841 tctgcttcat cccgaagggc gtattttggg ggtcagccgc agcgagttgg ataccgaagg
     6901 ttttctggcg aaggtggaaa ccagttccaa aatccatgtg aaagaaaatt tttccgatga
     6961 ggcttgggca tcgtttgtcg aacgtttcgc atatctcaaa gtcgatgtta cgcagccgga
     7021 cgattttgcc gctttgggcg atttggtcaa agcgcgcaaa gaaaccgaca atgtcgtcat
     7081 ctatctttcc accgcgccga aattcttcgc gcaaacatgt gaaaaccttg ccaaaatcgg
     7141 tttgaacgcc gacaacgtgc gtgtggtttt ggaaaaaccg ttgggtacgg atttggcttc
     7201 ttcccagcaa atcaataccg atgtcgcgcg ttatttcaaa gaagggcaaa tttaccgcat
     7261 cgaccactac cttggcaaag aaagcctgca aaacctgctt gcgctgcgtt ttgccaatgt
     7321 aatgttcgag ccgctgtgga acaataaata catcgaaagc gtgcagttga ccatcgccga
     7381 gcagttgggc gtggaagaac gcggcgagtt ttacgacatt accggcgcgt tgcgcgatat
     7441 ggtgcaaaat cacttgatgc aaatgctgtg catgactgcg atggaagccc ccgccagctt
     7501 ggatgccgac gcggtgcgcg atgaaaaagt caaagtcatc aagtcattga agccgctgac
     7561 cgtcgaatct gtcaatgaaa atgtcgtgcg cggacaatat accgccgcca aaggcatgaa
     7621 cggctatctt gaagaaatca acgttccgca agacagcttt accgaaacct acgtcgccat
     7681 taaagccgaa atcgaaaacg aacgctggaa gggcgttccc ttctacctgc gtaccggcaa
     7741 gcgcatggcg ggcaaagtgg cggaaatcgt tttgaacttc aaagatttga acagccatat
     7801 ttttgaaggc agccgcaccg cgcccaaccg gctcgttatc gagttgcaac catatgaatc
     7861 cgtgcgcctc tatacgcaga tgaaaacccc gggggcagga aataaggtcg aaaccgtgcc
     7921 gctggcaacc gatttgggca aagcattgga aagccgccgc gcggaagctt acgagcgcct
     7981 gctgctggat gtgattaacg gcaaactcgc tttattcaac cgccgcgacg aactcgaagc
     8041 cgcgtgggaa tatgtgatgc cgattttgga aaactggaca aataacacca cgccgccgca
     8101 cggctacggc gcacactcgt gggggcctga agccgcgcgc gaactattgg cgcgcgacgg
     8161 acacaagtgg cacgaagagc agtaatacaa taatgcgttc agacggcatg gggtttgaaa
     8221 tgccgtctga acgtaagtaa agca
//
LOCUS       DAXHNP010000091         8089 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.091, whole genome shotgun sequence.
ACCESSION   DAXHNP010000091 DAXHNP010000000
VERSION     DAXHNP010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8089
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.091"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(183..1979)
                     /locus_tag="ACFM5C_001408"
     CDS             complement(183..1979)
                     /locus_tag="ACFM5C_001408"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFC6069096.1"
                     /translation="MNTVSNYLSALREAMKAQGLDALVIPSADPHLSEYLPEHWQARR
                     ELSGFTGSVGTFVVTADEAGVWVDSRYWEQAAKQLAGSGIELQKSGQVPPYNEWLAAN
                     LPENAAVGILSDMVSLTGKRTLAQSLAAKNIRIEHPDGLLDQVWTSRPAIPAETVFVH
                     DPAYVSETAAEKLARVRAVMAEKGADYHLVSSLDDIAWLTNLRGSDVPFNPVFVSFLL
                     IGKDNAVLFTDRCRLNAEAAAALQTAGITVEPYAQVADKLAQIGGALLIEPNKTAVST
                     LVRLPESVRLIEGINPSTLFKSCKSEADIARIREAMEHDGAALCGFFAEFEDIIGNGG
                     SLTEIDVDTMLYRHRSVRPGFISLSFDTIAGFNANGALPHYSATPESHSTISGNGLLL
                     IDSGAQYKGGTTDITRVVPVGTPSAEQKSDNTLVLKAHIALAEAVFPENIPSPLIDAI
                     CRKPLWQAQCDYGHGTGHGVGYFLNVHEGPQRIAFAAPATPETAMKKGMVTSIEPGLY
                     RPGKWGIRIENLAANQAVAAPQETEFGSFLCFETLTLCPIDTRLMDTALMTDGEIDWV
                     NRYHAEVRRRLEPLTEGAAKAWLIKRTEPLAR"
     gene            2437..3690
                     /locus_tag="ACFM5C_001409"
     CDS             2437..3690
                     /locus_tag="ACFM5C_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6069097.1"
                     /translation="MSEQHISTWKSKINALGPGIMMASAAVGGSHLIASTQAGALYGW
                     QIALIIILTNLFKYPFFRFSAHYTLDTGKSLIEGYAEKSRVYLWVFLILCILSATINA
                     GAVAIVTAAIVKMAIPSLMFDAGTVAALIMASCLIILVSGRYRALDRVSKIIIVTLSI
                     ATLAAAGIAMSRGMQMQPDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEK
                     QRINPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIGQLINM
                     YAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRGKDKTGNAEFFAWN
                     IWVAGSGLAVIFWFDGVMANLLKFAMIAAFVSAPVFAWLNYRLVKGDEKHKLTSGMNA
                     LALAGLIYLTGFTVLFLLNLAGMFK"
     gene            3845..5356
                     /gene="lysS"
                     /locus_tag="ACFM5C_001410"
     CDS             3845..5356
                     /gene="lysS"
                     /locus_tag="ACFM5C_001410"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFC6069098.1"
                     /translation="MSEQNHPQTEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDS
                     FAADLHAQYGEIGKEELDPQGIPVKVAGRMMLKRQMGKASFATIQDVSGQIQLYLNNK
                     GVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS
                     DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGAT
                     AKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTM
                     IEFYEAFSDYERMMQMAEDIIRNASRTVNGTANITYNGKEVDLESPFERLTILEAIKK
                     YNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIIDY
                     PVEVSPLARASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKSQVAQKDAGD
                     DEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDSQTIRDVILFPQMRPE"
     gene            complement(5540..5770)
                     /locus_tag="ACFM5C_001411"
                     /pseudo
     CDS             complement(5540..5770)
                     /locus_tag="ACFM5C_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311460.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5774..6652)
                     /locus_tag="ACFM5C_001412"
     CDS             complement(5774..6652)
                     /locus_tag="ACFM5C_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6069099.1"
                     /translation="MARRSKTFEEAAAEVEERFGHRGIKLVEFEGTAKPCVINCPKHG
                     NQTCSRYSNMFIGSSWGCPSCGNEQAAKAGIATLRKNHIALEMLKQAVTGMTKQERIT
                     TQAYNEMTKSVAGSNSIVLNDVQGDTTINNHHTHTHNHSDADGKALSMRLTPRPLLSD
                     RQAAAFARTGKLTGSFDLFASVVAPSQYTFAVAMPDTSMSPVIEKGDLLVVEPRMRPA
                     DEDIVLIELSDKRLVVAHLVIDIAGRMLIYQTGRPSEALDLPEGSVILGVVLEVKKRF
                     MSAAQARRRVDSDYRP"
     gene            complement(6682..7809)
                     /gene="fic"
                     /locus_tag="ACFM5C_001413"
     CDS             complement(6682..7809)
                     /gene="fic"
                     /locus_tag="ACFM5C_001413"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6069100.1"
                     /translation="MSNWKPDIPYNDLPPLPPKQDIESKTILKRCITARASLARLKQA
                     AELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRT
                     ALFAGYESLTSRPLCTQTAIMVCNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGE
                     ETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEK
                     GLLDLPILYLSRYIIENRADYYRLLLGVTERQDWESWIIYILDGVADTADWTVAKIDA
                     IRRLFEQTRQHIRTHAQGIYTHELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKELS
                     DIGVLQEIAIGRDKLFIHPRLMELLRGEGNSFTSFQSLVKA"
BASE COUNT         1778 a         2033 c         2250 g         2028 t
ORIGIN      
        1 aggtgctgaa gcaccgagtg aatcggttcc gtactattcg tactgtctgc ggcttcgccg
       61 ccttgtcctg atttttgtta atccactata tttgcttgcg gcaagatgaa aacggtgcgg
      121 gatgttttag gaaaccaatg ccgtctgaag gctttcagac ggcatttttt gcgccgtgct
      181 gtttaacgcg ccagcggttc ggtgcgtttg atcagccacg cttttgccgc gccttcggtc
      241 agcggctcga ggcggcggcg gacttcggcg tggtagcggt tgacccagtc gatttcgccg
      301 tcggtcatga gggcggtgtc catcaggcgt gtatcgatgg ggcagagggt cagggtttca
      361 aaacagagga agctgccgaa ttcggtttct tgaggggcgg cgacggcttg gttggcggca
      421 aggttttcaa tgcggatgcc ccattttccc gggcggtaga gtccgggttc gatggaggta
      481 accatgcctt ttttcatggc ggtttcgggc gtggcggggg cggcgaaggc gatgcgctgc
      541 gggccttcgt ggacgttgag gaaatagcct acgccgtgtc cggtgccgtg gccgtagtcg
      601 cattgcgcct gccacagggg tttgcggcaa atcgcatcaa tcagcggcga ggggatgttt
      661 tcggggaata cggcttcggc aagcgcgata tgggctttga gaacgagggt gttgtcgctt
      721 ttttgttcgg cactcggcgt gccgacaggg acgacgcggg tgatgtcggt cgtgccgcct
      781 ttgtattgcg cgccggagtc gatgagcaaa agcccgttgc cgctgatggt gctgtggctt
      841 tcgggcgttg cgctgtaatg cggcagtgcg ccgttggcgt tgaagcctgc gatggtgtcg
      901 aaactcaatg aaatgaagcc tgggcgcacg ctgcggtggc gataaagcat ggtgtccacg
      961 tcgatttcgg tcaggctgcc gccgttgccg atgatgtctt caaactcggc gaagaaaccg
     1021 cacaacgccg cgccgtcgtg ttccatcgct tcgcggatgc gggcgatgtc ggcttcggat
     1081 ttgcaggatt tgaacagcgt ggatgggttg attccctcga taaggcgcac gctttcgggc
     1141 aggcgcacaa gcgtgctgac ggcggttttg ttcggttcga taagcagcgc gccgccgatt
     1201 tgcgcgagtt tgtcggcaac ttgggcataa ggttcgaccg tgatgcctgc ggtttgcagc
     1261 gcggcggcgg cttcggcgtt cagacggcat cggtcggtaa acaggacggc gttgtctttg
     1321 ccaatcagca ggaaggacac gaaaacaggg ttgaaaggta cgtcgctgcc acgcaggttg
     1381 gtcagccagg cgatgtcgtc gagcgaggaa accaagtggt aatccgcgcc tttttccgcc
     1441 atcacggcgc gcacgcgggc gagtttttcg gcggcggttt cggagacgta ggcggggtcg
     1501 tggacgaaca cggtttcggc aggaatggcc gggcggcttg tccacacttg gtcaagcagg
     1561 ccgtcggggt gttcgatgcg gatgtttttg gcggcgagcg attgcgctaa agtgcgtttg
     1621 ccggtgagcg agaccatatc ggaaaggatg ccgacggcgg cgttttcggg caggtttgcc
     1681 gcgagccatt cgttatacgg cggcacttgc ccgctttttt gcagttcgat gccgctgccc
     1741 gcaagctgct tggcggcttg ttcccaatag cggctgtcca cccatacgcc cgcttcgtcg
     1801 gcggtaacga cgaatgtgcc gaccgagccg gtaaagcccg acaattcgcg ccgcgcctgc
     1861 caatgttcgg gcaggtattc ggacaggtgg gggtcggcgg aagggatgac gagtgcatcc
     1921 aagccttgcg ccttcatggc ttcgcgcaat gcggacaggt aattcgatac ggtattcata
     1981 ataattcctc caatcgggtt ttgcggcttc agacggcatg gacggaaatc tgaaatgccg
     2041 tctgaaaaac ataaccatct tatcaaatcg ccagcctgct gcaaaacgga cgggctgatc
     2101 ggatggtgcg tgtttgcgcg aaaaaagcga tgtaaggttg tttgttgtaa aattttaggc
     2161 ataaaatgtc gtttcatgcc tttttttgga agtaatacgg aaaatatagt caagtttgag
     2221 catgaagttc taatagtgtg tgttggcagg tatttggatt acgttacaat acgcgctttc
     2281 atcaaaattt ccctaccggg cggtatcctg tttttgaaga cggtaggatt tgggtttgtt
     2341 tgggggcaat cccgcccaaa ttggagcaat agatagggct gtgtccgaat atgcggctct
     2401 gtgtgttgaa acacggttaa aaatacggaa gactttatgt ccgaacaaca tatttcgact
     2461 tggaaaagta aaatcaacgc attgggacca gggattatga tggcttcggc ggcggtcggc
     2521 ggttcgcacc tgattgcctc gacgcaggcg ggcgcgcttt acggctggca gatcgcgctc
     2581 atcatcatcc tgaccaacct cttcaaatac ccgtttttcc gcttcagcgc gcattacacg
     2641 ctggacacgg gcaagagcct gattgaaggt tatgccgaga aaagccgcgt ttatttgtgg
     2701 gtattcctga ttttgtgcat cctctccgcc acgattaacg cgggcgcggt cgccattgtc
     2761 accgccgcca tcgtcaaaat ggcgattccc tcgctgatgt ttgatgccgg cacggttgcc
     2821 gccttgatta tggcatcctg cctgattatt ttggtgagcg gacgttaccg cgctttggat
     2881 cgcgtttcca aaatcatcat cgttactttg agtatcgcca cgcttgccgc cgccggcatc
     2941 gctatgtcgc gcggtatgca gatgcagccg gactttatcg agccgacacc gtggacgctt
     3001 gccggtttgg gcttcctgat cgcgctgatg ggctggatgc ctgcgccgat tgaaatttcc
     3061 gccatcaatt ctttgtgggt aaccgaaaaa caacgcatca atccttccga ataccgcgac
     3121 gggatttttg atttcaacgt cggttatatc gccagtgcgg ttttggcttt ggttttcctt
     3181 gcactgggcg cgtttgtgca atacggcaac ggcgaagcag tgcagatggc gggcggcaaa
     3241 tatatcgggc aattgatcaa tatgtacgcc gttaccatcg gcggctggtc gcgcccgctg
     3301 gtggcgttta tcgcgtttgc ctgcatgtac ggcacgacga ttaccgttgt ggacggctat
     3361 gcccgtgcca ttgccgaacc cgtgcgcctg ctgcgcggaa aagacaaaac gggcaacgcc
     3421 gaattctttg cctggaatat ttgggtggcg ggcagcggtt tggcggtgat tttttggttt
     3481 gacggcgtaa tggcgaatct gctcaaattt gcgatgattg ccgcttttgt gtccgcccct
     3541 gtgtttgcct ggctgaatta ccgtttggtc aaaggtgatg aaaaacacaa actcacatca
     3601 ggtatgaatg cccttgcatt ggcaggcttg atttatctga ccggttttac cgttttgttc
     3661 ttattgaatt tggcgggaat gttcaaatga taacgatgcc gtctgaaacc gcaaaccgct
     3721 ttcagacggc attgtcgcgt ttatggaaaa aaatgccgac atcgcgtaaa atatgcgcaa
     3781 attttgtgat tcggtcaggt cgtctgaaac agattgcgcc tgatttattt tttcggaaaa
     3841 ccctatgagc gaacaaaacc atccgcaaac cgagccgcag ttggacgaaa accaaatcat
     3901 cgccctgcgc cgcgaaaaac tgcacaacat ccgccaacag cgcaacgcct atcccaacga
     3961 cttcaaacgc gacagcttcg ccgccgattt gcacgcccaa tacggcgaaa tcggcaaaga
     4021 agaactcgat ccgcaaggca ttcccgtcaa agtggccggc cgcatgatgc tgaagcgtca
     4081 aatgggcaag gcgagctttg ccaccattca agacgtgtcc gggcaaatcc agctttatct
     4141 gaacaacaaa ggcgtgagcc aagaagtttt ggacgacttc aaccattggg atttgggcga
     4201 catcgtcggc gcggaaggca ctttgttcaa aaccaaccac ggcgaactga ccgtacgcgt
     4261 gtccgacatc cgcctgttgt ccaaatcctt gcgtccgctg ccggacaaac acaaaggctt
     4321 gagcgatcag gaaaccaaat accgccaacg ctatgtcgat ttgattgcca acgaagaatc
     4381 gcgcaatacc tttatcaaac gcagccaaat catccaatcc gtgcgtaatt ttatggtggg
     4441 cgagcattat ctcgaagtcg aaaccccgat gatgcacccg attcccggcg gcgcgacggc
     4501 aaaacccttc gttactcatc acaatgcctt agatattccg ctttacctgc gtatcgcgcc
     4561 tgagctgtat ttgaaacgcc tggttgtcgg cggcttggaa cgcgtgtttg aaatcaaccg
     4621 cagcttccgc aacgaaggca tgtccgtgcg ccacaacccc gaatttacga tgattgaatt
     4681 ttacgaagcc ttctccgact acgaacgtat gatgcagatg gcggaagaca tcatccgcaa
     4741 cgcatcgcgc acagtaaacg gtacggcaaa catcacttac aatggcaaag aagtcgattt
     4801 ggaaagcccg ttcgagcgtc tgaccatcct cgaagccatc aaaaaataca atccgcacta
     4861 caccgacgag cagttgaacg atgcggaatg gctgaaaaaa gaaatcgtca aacacggtga
     4921 aagcctgccg ccgtccccgg gcatcggcag cctgcaactc gcgctgtttg aaggttgcgc
     4981 cgagggcaag ctgtggaacc cgactttcat catcgattac ccggtcgaag tttccccgtt
     5041 ggcgcgcgct tcggatacca aacaaggtct gaccgaacgt ttcgaattgt tcgttgtcgg
     5101 ccgcgaactg gcaaacggct attcagaatt gaatgaccct gaagaccaag ccgaacgctt
     5161 caaatcgcaa gtcgcacaaa aagacgcggg cgacgacgaa gccatgcatt acgatgccga
     5221 ctacatccgc gcgatggagt tcggtctgcc gccgacaggc ggttgcggca tcggtatcga
     5281 ccgcttagtg atgctgctga ccgattcgca aaccatccgc gatgtgattc tgtttccgca
     5341 gatgcgcccc gagtaatcat aaaaacagtt gaaatggcaa tgccgtctga acctgattgg
     5401 attcagacgg cattttgtat ggcaggattg atagtgaatt aacaaaaatc aggacaaggc
     5461 ggcgagccgc agacagtaca aatagtacgg aaccaattca cttggtgctt cagcacctta
     5521 gagaatcgtt ctctttgagc taaggcgagc caacgctgta ccggtttaaa tttaattcac
     5581 tatattcggt ttccaactga ccgacccatt ctgacaaggc cgacaggcgt tgttcggatt
     5641 tcgccacgaa cgggttttcg gtatcccacg cgtagcctgc caaaatcgaa gaaagcatac
     5701 ggctgatttc cgggctgcgg tcgggcgcgt acacgacgtt ttggaagcgg aaatcgtacc
     5761 aaccgtccac acatcagggg cggtaatccg aatcaacacg ccttcttgcc tgtgcggcgg
     5821 acataaaccg ttttttgacc tccagcacca cacctaaaat cacgctgcct tcgggcaggt
     5881 cgagggcttc agacggcctg cccgtctgat aaatcagcat cctgcccgca atatcgataa
     5941 caaggtgcgc gacgaccagc cgcttgtcgg acagttcaat cagtacgatg tcttcgtccg
     6001 cagggcgcat acgcggctcg accaccagca aatccccctt ttcgataacc ggcgacatgg
     6061 acgtgtcggg catggcaacg gcaaacgtgt actgcgaggg ggcgaccacc gaagcaaaca
     6121 agtcgaaact gcctgtgagt ttgcctgtac gggcgaaagc cgccgcctga cggtctgaca
     6181 acagggggcg tggtgtgagc ctcatcgaca gtgctttgcc gtcggcatcg ctgtggttgt
     6241 gcgtatgcgt atgatggttg ttgatggtcg tatcgccttg gacatcgtta aggactatgc
     6301 tgtttgaacc tgccacggat ttggtcatct cattgtaggc ttgcgtcgtg atgcgctctt
     6361 gcttggtcat acctgttaca gcctgtttca gcatttctaa cgctatgtga ttcttcctaa
     6421 gggtcgctat accggctttt gcagcttgct cattaccaca agaggggcaa ccccagctac
     6481 ttcctatgaa catattggag tacctcgaac aggtttggtt tccatgttta gggcagttga
     6541 ttacacacgg cttggctgta ccctcaaact cgaccaactt aatgccacga tgaccgaaac
     6601 gttcctcaac ctcagcagca gcttcttcaa atgtttttga ccttcttgcc atattgacct
     6661 ccggattatt gattattttg gctatgcttt aacgagggat tggaatgagg taaagctgtt
     6721 gccctctccc cgcaatagtt ccattaggcg cggatgaatg aatagtttgt ccctgccgat
     6781 ggcgatttct tgcagcacac ctatgtctga aagctctttc aggtacttag aggccgtctg
     6841 ccgtttggct atccctgccg cttctaggtt ggcaatgcgt gtatatggct gctcaaacag
     6901 aagatttacc agttcgtgcg tgtagattcc ttgtgcgtgt gtccgtatgt gttgacgtgt
     6961 ctgctcaaac aggcggcgta tcgcatctat tttcgctacc gtccaatcgg cggtgtcggc
     7021 tacgccgtct aagatgtaga ttatccagct ttcccagtcc tgccgttcgg ttacgcctaa
     7081 aagcaggcgg taatagtccg ccctgttttc gataatatag cggctcaaat acaaaatagg
     7141 caaatccaaa agcccttttt caatcaatag caggctgttc aatatgcgcc ccgtccgccc
     7201 gttgccgtcc gtaaacggat ggatggcttc aaattggtaa tgtgccgccg ccatgatgat
     7261 aagcgggtct aaatcgccgc tttcgtgaat aaaccgctcc caatttgcca gcttgccgcg
     7321 tatggtttct tctccttcgg gcggggtata gacaacattt ccgctgttgc ctccttttag
     7381 ggctgtgccg cctgttttgc ggatggccat ttcgtagggg tgcttgatgg cgttgcagac
     7441 catgatggcg gtttgtgtgc ataaagggcg gctcgtcagt gattcatagc ctgcaaacag
     7501 ggcggtgcgg tattgcaggg cttctttcgt ggcagggtct tgccgttccg tatccatttg
     7561 cagggattga aacagcttat ccgttgtggt tacgatgttt tcaatttccg aacttgcacg
     7621 ggcttccata acaggaaggg tgttaatcag catggcttga ttcggtatca gttctgccgc
     7681 ctgctttaaa cgggcaaggg atgcacgggc ggttatacaa cgtttcagga tggttttgct
     7741 ttcaatatcc tgttttggcg gcaggggtgg taaatcgtta tagggaatat cgggtttcca
     7801 gttgctcata tttaaaattt cggaaaattt aaagatgttt ccagtatatg tttacgccgt
     7861 gtatatatca aggatatatg tttaaaaatt tggcttttgt aaatatatgg gcggtaaaac
     7921 cgcattattt tatgttgtta cctattttac accttgtctg cacacgattt ccaaacaacc
     7981 taaaaagaaa cctgccgaaa ggcaggttta aagaggtcat tttaaatgtg aactaaagct
     8041 tacaccctcg tagggtatcg tgtatatcag acgtacttaa tatacacta
//
LOCUS       DAXHNP010000092         8026 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.092, whole genome shotgun sequence.
ACCESSION   DAXHNP010000092 DAXHNP010000000
VERSION     DAXHNP010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8026
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.092"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(170..2212)
                     /gene="recG"
                     /locus_tag="ACFM5C_001414"
     CDS             complement(170..2212)
                     /gene="recG"
                     /locus_tag="ACFM5C_001414"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFC6069101.1"
                     /translation="MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETH
                     IMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQ
                     TAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
                     QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKF
                     DELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKVVSEICRDM
                     AQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIKFKQWLE
                     PLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAIGTHALFSDGVTFHNLGLTIVDEQH
                     RFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDKLPPGRTPIKTRL
                     VNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEESETLQLQTAAETLARLQTALPELNIG
                     LVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH
                     QLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLG
                     ARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV"
     gene            complement(2298..2741)
                     /gene="secB"
                     /locus_tag="ACFM5C_001415"
     CDS             complement(2298..2741)
                     /gene="secB"
                     /locus_tag="ACFM5C_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HFC6069102.1"
                     /translation="MSEELQPVFSIERLYVKDLSLEVPHAPQIFLEQGEPEVDMRVST
                     GSQKLEDGYYNVDVTVTVTAKLDNERTMFLNEVTQSGIFRLENIPEEDVQLLLGVACP
                     NILFPYAREAVSGTVTRAGFPPVLLAPINFEAIYQQQQEAEAAGA"
     gene            complement(2762..3019)
                     /gene="grxC"
                     /locus_tag="ACFM5C_001416"
     CDS             complement(2762..3019)
                     /gene="grxC"
                     /locus_tag="ACFM5C_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HFC6069103.1"
                     /translation="MQTVTMYTGPFCPYCAMAKRLLHTAGVGHIDEIRVDASPEAFAE
                     MQQLSGQRSVPQIFIGETHVGGFTDLYRLQQEGGLDGLLNP"
     gene            3233..4726
                     /gene="rng"
                     /locus_tag="ACFM5C_001417"
     CDS             3233..4726
                     /gene="rng"
                     /locus_tag="ACFM5C_001417"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HFC6069104.1"
                     /translation="MLSGLPIPKDIARPPETILVNITPQETRVAVLEENNICELHIER
                     NSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLERAAFLHIVDVLEQRRNPEETQRIEHM
                     LFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVSQRIEDDAERSSL
                     RERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQAKIRPPETLLY
                     QDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELFKGERPLFE
                     THNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLE
                     ACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLG
                     LVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRI
                     LAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDIVLM"
     gene            complement(4760..5992)
                     /locus_tag="ACFM5C_001418"
     CDS             complement(4760..5992)
                     /locus_tag="ACFM5C_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6069105.1"
                     /translation="MFVPLAMLAGMFSYYETFHETEALQDDLLRQAALYVAPDSKPET
                     LPEGDGDTRIFVQMPQQEDSVVSLSAHFADGLHTLQADDDDDYYRVYIRTTEQGRIAV
                     MQENEYREDLAAAAARQSVLPLMILLTVWITHKAMRPVRKLSQSLEQRRINGLSALSE
                     DNIPSEIRGFVTAINLLLKRADEDIRHRQRFVADAAHELRTPMTALSLQAERLNNMPL
                     PPEAARQSAVLQQSIRRNKHLLEQLLALARSQSDETPLTKTTFGLQSRFRQVLQELMP
                     LALEKRQDIGVAVGGDVEVSADETEIYTLIKTFADNAVRYTPPEGRIDLGFTDEGKYL
                     AVWVEDNGNGIPESERARVLDPFYRILGTEQQGTGLGLSIADTLATEYGRYLELSDSR
                     RFGRGLLIRALLDKETLK"
     gene            complement(5988..6163)
                     /locus_tag="ACFM5C_001419"
                     /pseudo
     CDS             complement(5988..6163)
                     /locus_tag="ACFM5C_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692565.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(6382..7695)
                     /locus_tag="ACFM5C_001420"
     CDS             complement(6382..7695)
                     /locus_tag="ACFM5C_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HFC6069106.1"
                     /translation="MLTFIGLLIIGVIVWLLLTEKVSPIIALILVPLFGALLAGFDVS
                     QLKEFYSGGTKSVMQIVIMFMFSILFFGIMNDVGLFRPMIGGLIKLTRGNIVAVSVGT
                     VLVSVVAQLDGAGATTFLLVVPALLPLYKRLHMNPYLLFLLLTSSAGLINLLPWGGPT
                     GRVASVLGADVGELYKPLLTVQIIGVVFILALSLLLGVREKRRIVRELGALPAVADLI
                     KPVPLSEEEQKLARPKLFWWNVLLFLAAMSLLFSGIFPPGYVFMLAATAALLLNYRSP
                     QEQMERIYAHAGGAVMMASIILAAGTFLGILKGAGMLDAISKDLVHILPDALLPYLHI
                     AIGVLGIPLELVLSTDAYYFGLFPIVEQITSQAGVAPEAAGYAMLIGSIVGTFVTPLS
                     PALWMGLGLAKLSMGKHIRYSFFWAWGLSLAILASSIAAGIVPLP"
BASE COUNT         1889 a         2359 c         2094 g         1684 t
ORIGIN      
        1 gaatgacggc ggagggcttg ccgttttccc gataagtctc tgcggcttcc cattgccgga
       61 tttccgccca cttgggaata acgagattta aaatcatgaa aatgtgtcaa aaataatgca
      121 aaatcagatt ccgttgcact tttttccaat atttccggcg acatttcgct cacacgccca
      181 aataaccttc cctgccggaa agccatcgtg ccaaatgcgc ttcgacgatt tcggggtttt
      241 gttcaatcag tatcggggcg atttcgcgcg cttgttccaa aaggtgtaag tcttcttcga
      301 gcttggcgaa acgcagcata ggcacgccgc tttgacgcgc gccgagaaat tcgccggggc
      361 cgcggatgtt gaggtcttgg cgggcgattt caaagccgtc ggtgtgttcg tagatgactt
      421 tcagccgcgc tttggcgagt tcgcccaagg gttcggcaaa caggaggacg cacacgcttt
      481 ctgccgcgcc gcgcccgacc cgaccgcgta attggtgcag ctgcgccaag cccatgcgct
      541 cggcgtgttc gatgaccatc agggcggcat tgggcacatc tacgccgact tcgataacgg
      601 tggtggcgac caagacgttc agctcccccg aagaaaaccg tgccatcact tcggcctttt
      661 cggcggcctt catgcgcccg tgtaccagtc cgatattcag ctcgggcaat gccgtctgaa
      721 gccgggcgag ggtttcggcg gcggtttgca gttgcagggt ttcgctttct tcaatcaatg
      781 ggcagaccca atacgcctgc cgcccttttc ggcaagtatt gaggacgaag ccttcgactt
      841 cggcgcggcg gacgttgttg acgaggcgcg ttttaatcgg ggtgcgcccg ggcggcagtt
      901 tgtcgatgac ggacacgtcc aaatcggcga aaaaactcat cgcaagcgtg cgcgggatgg
      961 gcgtggcgga catcatcaac tgatggactt cgcgcccttt gtttttaagg gcgaggcgtt
     1021 gggcaacgcc gaaacggtgc tgttcgtcca cgatggtcag gcccaaattg tgaaacgtca
     1081 cgccgtctga aaacagggcg tgcgtgccga tggcgatttt gacgctgccg tcggcgagtt
     1141 tggctttggc ttcgtctttg gcttttttac gcaaactgcc aaaaaggcgg acaacttcaa
     1201 tgcccaaagg ttcgagccat tgtttaaatt taataaaatg ttgttcggca aggatttcag
     1261 tgggcgccat tacagccacc tgcgcaccgg attcgatggc ggtcagcgcg gacaaggcgg
     1321 cgacaatggt tttgccgctg ccgacatcgc cctgcagcag gcggtgcatc gggtaggttt
     1381 gcgccatatc gcggcagatt tcggaaacaa ctttttcttg cgcatcggtc agggcaaacg
     1441 gcagggcttg gcgcagggct tgggtcaatg tgccgtcgcc gcccaatgcc gccgccgtgc
     1501 cgccgatacg cttctgtcgc gccaagcgca tcgaaagctg ttgcgccaaa agttcatcga
     1561 atttgagccg ttgccatgca ggcagcgtgc cgtctgaaag ctgatgaatc gtgaaactcg
     1621 gcggcggcga atgcaaaaga cgcaggcttt cggcgaggtg tggcagcttc agacggcaca
     1681 gcagggcatc gggcagcgtg tcgtgcagcg gcgtaacgtc caacgccgtc tgaataatac
     1741 ggcgcaaagt gggctggttc aaaccgttta cggtcgggta aaccggcgtg aggctttccg
     1801 ccaaaccgcc gccctcggca tcgcggattt tgggatgaat catctcgtcg ccgtaaaagc
     1861 cgtgtttgat ttcgcccacg gcgcggatgc gtttgccgac cgccgtctgt ttctgatggc
     1921 tggcgtaaaa gtggatgaag cgcagaaaaa ggacgctgcc ggaaccgtcg gcgatttgga
     1981 caatcaactg cttgcgcggt ttgaacgtta cttcctgatg gataacctcg ccctcgacct
     2041 ggcacggcac gccaatcggc gcgtccttaa tcggcataat gtgcgtctcg tcctcgtaac
     2101 gcagcggcag gtgcaacacc aaatcccacg cggtatggag gttgagtttg tcgagcttct
     2161 tggcggaaac atcggtgatt ttgagctgtt tctgggtttc gggcgacatc ataggcagat
     2221 tcctttgaac gcacctattt tatccgaaaa caaaaatacc gtctgaaacg gattcagacg
     2281 gcatcggcag gcaggaatca agccccggcg gcttcggctt cctgctgttg ttggtaaatc
     2341 gcctcaaaat taatcggcgc gagcaggacg ggcgggaagc cggcacgtgt taccgtaccg
     2401 gaaacggctt cgcgcgcgta agggaagagg atgttcggac acgccacgcc cagcagcagc
     2461 tgcacatctt cttcggggat gttttccaaa cggaagatgc cactttgggt tacttcgttc
     2521 aaaaacatcg tgcgctcgtt atccagcttg gcggtaacgg ttacggtaac gtccacgttg
     2581 tagtagccgt cttccagctt ttggctgccg gtggaaacgc gcatatccac ttcaggctcg
     2641 ccctgttcca aaaagatttg cggcgcgtgc ggcacttcca aagacaagtc tttgacatac
     2701 agtcgctcga tgctgaatac gggttgcagt tcttcgctca ttttgttttc ctagttgggg
     2761 gttaagggtt cagcagtccg tccagcccgc cttcctgctg gaggcggtag aggtcggtaa
     2821 atccgccgac gtgcgtttcg ccgatgaaaa tctgcggcac gctgcgctgt cccgaaagct
     2881 gctgcatttc ggcaaaggct tcggggcttg catcgacacg gatttcgtcg atatgtccga
     2941 cacctgccgt gtgcagcagc cttttcgcca tcgcgcagta gggacaaaac ggacctgtgt
     3001 acatggtaac ggtctgcata ttgggtttcc gaaagttttg caatgataat caatataggg
     3061 gcatttcccc tgtttggcaa gtgcggaaca gatgcacgtt caaacggcat gtgcggaatg
     3121 tgtcaaagtt tcttttttaa agtatgatag gcattgtgaa aaatattttt gcacccgcgc
     3181 tgcgcggcgg aacgggtgca aaaatatttt tattacattt tcaggaaaaa ccatgttgtc
     3241 aggactcccc atccccaaag acatcgcgcg cccgcccgaa acgatattgg tcaacatcac
     3301 gccgcaggaa acgcgcgtag cggtgttgga ggaaaacaat atctgcgagc tgcacatcga
     3361 gcgcaacagc gaacacagcc tggtcggcaa tatctatctg ggcgtggtgc gccgcgtgct
     3421 gcccgggatg cagagcgcgt ttatcgacat cggcttggaa cgcgcggcgt ttttacacat
     3481 cgtcgatgtc ctcgaacaac gccgcaaccc cgaagaaacc cagcgcatcg aacatatgct
     3541 gtttgaaggg cagtctgttt tggtgcaggt catcaaagac ccgatcaaca ccaaaggcgc
     3601 gcggctttcc acccaaatct cgctggcggg gcgtttcctc gtccatcttc cgcaagaaga
     3661 ccacatcggc gtgtcccaac gcatcgaaga cgatgccgaa cgcagcagcc tgcgcgaacg
     3721 cctcgacaag ctcctgccgg aaaatgcctg ccggggctac atcatccgca ccaacgccga
     3781 aaacgccacc gacgaacagc tccagtccga catcgactac ctgaccaaag tgtgggaaca
     3841 catccaagaa caggcgaaaa tccggccgcc ggaaaccctg ctttatcagg atttgccctt
     3901 gagtttgcgc gtattgcgcg atatggtcgg ctgcgacacg caaaaaatcc tcgtcgattc
     3961 caccgtaaac cacgggcgca tgacgcgttt tgccgaacaa tacgtccacg gcgcattggg
     4021 caggatagaa ttgttcaaag gcgaacgccc gctgtttgaa acccacaacg tcgaacagga
     4081 aatcagccgc gccctgcaac cgcgcgtcaa cctcaacttc ggcagctacc tgattatcga
     4141 atccaccgaa gccatgacca cgatagacgt gaacaccggc ggcttcgtcg gcgcacgcaa
     4201 cttcgacgaa accatcttcc gcaccaacct cgaagcctgc cacaccatcg cccgcgaatt
     4261 gaggctacgc aacctcggcg gcatcatcat catcgacttc atcgatatgg cgcaggaaag
     4321 ccaccgcgaa gccgtgttgc aggagcttgc caaagccctc gccttcgacc gtacccgcgt
     4381 taccctgcac ggttttacca gcctggggct ggtcgagctg acgcgcaaac gctcgcgcga
     4441 aaacttaaac caagtcctct gcgaaccctg cccttcctgc caaggcagag gccgtctgaa
     4501 aacgccgcaa accgtgtgct acgaaatcca gcgcgaaatc gtccgcgaag cgcgccgtta
     4561 cgatgccgaa agtttccgca tcctcgccgc ccccaacgtc atcgatttgt ttttggacga
     4621 agaatcgcaa tccttggcaa tgctgataga tttcatcggc aaaccgattt ctctggcagt
     4681 cgaaaccgct tacacgcagg aacaatacga catcgttttg atgtaaaaat gccgtctgaa
     4741 gccttcagac ggcatctgtc tatttcaggg tttccttgtc caacaaggcg cgtatcagca
     4801 gcccgcgccc aaaccggcgg ctgtcggaca attccaaata tctgccgtat tctgtggcaa
     4861 gcgtgtcggc gatggacagc cccagccccg tcccctgctg ctccgttccc aaaatacggt
     4921 aaaacggatc gaggacgcgg gcgcgttcgg attcgggaat gccgttcccg ttatcttcca
     4981 cccacacggc gagatatttc ccttcgtccg tgaaacccaa atctatcctg ccttcgggcg
     5041 gcgtgtaacg taccgcgttg tcggcaaagg ttttaatcag cgtatagatt tccgtttcgt
     5101 cggcagacac ttcgacatcg cctccgaccg ccacgccgat gtcctgacgt ttttccaaag
     5161 ccagcggcat cagttcctgc aacacttggc ggaaacggct ttgcagaccg aatgtcgttt
     5221 tcgtcagagg ggtttcatcc gactgcgaac gcgccagtgc caaaagctgt tcgagcaggt
     5281 gtttgttgcg cctgatgctc tgctgcaaaa cggcagactg ccgcgccgct tcgggcggga
     5341 gcggcatatt gttgagccgt tccgcctgaa gggaaagggc tgtcatcggc gtacgcaatt
     5401 cgtgtgccgc gtcggcgaca aaccgctgac ggtggcggat gtcttcatcc gcacgtttca
     5461 aaagcaggtt gatggcggtt acgaaccctc tgatttcact gggaatattg tcctcactca
     5521 aggcagacag gccattgatt cggcgttgtt cgagactttg cgacaatttg cggacggggc
     5581 gcatggcttt gtgcgtaatc cacacggtca gcagtatcat cagcggcaac acgctttgcc
     5641 gtgccgctgc cgccgccaaa tcttcacggt attcattttc ctgcatgacg gcaatccgtc
     5701 cctgttcagt cgtgcggata tagacgcggt aataatcgtc gtcatcgtcc gcctgaagcg
     5761 tgtgcagacc atccgcaaaa tgcgcggaca ggctgacaac agagtcttcc tgctgcggca
     5821 tctgcacgaa aatgcgcgta tcgccgtcgc cctcgggcaa agtttcgggt ttagaatcgg
     5881 gtgcgacgta caatgccgcc tgacggagca ggtcgtcctg caacgcttcc gtttcgtgga
     5941 aggtttcgta gtaggaaaac atacctgcaa gcattgccag cggaacaaac atccaaaccg
     6001 tcccgccccg gcaaacccaa atccagcagc atcaagtcat aaggctgggc agcggcagcc
     6061 gcgcgccgtt tttgacccaa tccaccgcat agccgccgtc tttcaaactt gccgacaccg
     6121 cctccgcaat catcgcatcg tcttccacca gcaaaacacg catcaacttt cccttcaaaa
     6181 taaaccgtgc ctattctaac accccaaaat tagccgcaat ttagcggcct ttacgcttgc
     6241 cggtattttt caaaactgcg gcacaaaaaa accgcgccgg caactgcctt cagacggcat
     6301 tggggcgcga ttgcaacaca cgggcaggca gagcctgcga cagaccacag gaacgattca
     6361 ggcttcagac ggcttcgccg tttacggcag aggcacgatt cctgccgcta tcgaactggc
     6421 caatatcgcc agcgacaaac cccacgccca gaaaaacgaa taacggatgt gtttgcccat
     6481 cgacaatttc gccaaaccca agcccatcca caaagccggc gaaagcggcg taacaaaagt
     6541 gccgacgata ctgccgatca acatcgcata acctgctgct tcaggcgcca cgcccgcctg
     6601 cgaggtaatc tgctccacaa tcggaaacag tccgaaataa taagcgtccg tactcaaaac
     6661 caactcaagc ggaatgccca acacaccgat ggcaatatgc agataaggca gcagcgcgtc
     6721 cggcaggata tgcacaaggt ctttggaaat cgcgtccaac atccccgcac ccttcaaaat
     6781 ccccaaaaac gtacctgccg ccaaaataat ggacgccatc atcaccgcgc cgccggcgtg
     6841 ggcataaatc cgctccatct gttcctgcgg gctgcggtaa ttcaaaagca acgccgccgt
     6901 tgcagccagc ataaatacat aacccggcgg gaagatgccc gaaaaaagca ggctcatcgc
     6961 cgccaaaaac agcaggacat tccaccaaaa cagtttcgga cgcgccaatt tttgttcttc
     7021 ttccgacaaa ggcaccggct ttatcaaatc cgccacggcg ggcaacgcgc ccaactcccg
     7081 gacaatccgc cttttttcac gcacacccaa aagcagggac agcgcaagga taaacactac
     7141 accgataatt tgcaccgtca acaaaggttt atacaattcg cccacatctg cgcccaacac
     7201 gcttgcaacc cgcccagtcg gcccgcccca cggcagaagg ttaatcaatc ccgcactgga
     7261 agtcagcagc aaaaacagca ggtaaggatt catatgcaga cgcttgtaaa gcggcaaaag
     7321 ggcggggacg accaataaaa acgtcgtcgc acccgccccg tccaactgcg ccaccaccga
     7381 caccaagacc gtccccacac tcactgccac gatattaccc cgagtcagct taatcaaacc
     7441 gcctatcatc ggacggaaca gccccacatc gttcatgatt ccaaaaaaca aaatggaaaa
     7501 cataaacata atcacaatct gcatcaccga tttggtgccg cccgaataaa attcttttaa
     7561 ttgggataca tcaaaccccg ccagcaacgc cccaaacagc ggcaccaaga ttaatgcgat
     7621 gatgggcgac actttttccg tcagcagcaa ccatacgatg accccgataa tcagcagtcc
     7681 gataaacgtc agcatcattt ctcctttatt ttattttaaa cagaaaaccg accgtgcagg
     7741 caaaaccgcc cacagacgcg ggataagcct tgcattctac ttttttattt tgaaacaagt
     7801 caatcggtca tttcctccca tttacgcctg ccgccattcc tgtatccgtc cgtcatttca
     7861 cggcggcaac cgatacggaa caaccggcaa accggtatcg ggacggcgcg ggggcattca
     7921 tcccggtgcg ccgattcaaa cgaaaccgcc cctatcattg cggagcgcgg ggcgtgccgt
     7981 acacgtggga ttttatagtg gattaacaaa aatcaggaca aggcgg
//
LOCUS       DAXHNP010000093         8021 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.093, whole genome shotgun sequence.
ACCESSION   DAXHNP010000093 DAXHNP010000000
VERSION     DAXHNP010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8021
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.093"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(68..814)
                     /locus_tag="ACFM5C_001421"
     CDS             complement(68..814)
                     /locus_tag="ACFM5C_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6069107.1"
                     /translation="MDFRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALAR
                     LIHLEKAGAPMRVLAWALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILV
                     SGEAAIALRRGYGPLIAGSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQ
                     AMRYVILPQALRRMLPPLASEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPL
                     YTVALIYLLMTTFLGWIFLRLEKRYNPQHR"
     gene            complement(798..977)
                     /locus_tag="ACFM5C_001422"
     CDS             complement(798..977)
                     /locus_tag="ACFM5C_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069108.1"
                     /translation="MNGKCRLKTARPAFLRRRATAVCRDKKVQAAVFTVKWRIILQRR
                     QFRRFLIRTVYGFSF"
     gene            complement(993..1664)
                     /locus_tag="ACFM5C_001423"
     CDS             complement(993..1664)
                     /locus_tag="ACFM5C_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFC6069109.1"
                     /translation="MQIKKIMKWLPVALSLLGALGYTGYGSEAVRTAVAVLDVLGAAG
                     DAGSDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQA
                     YGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSY
                     AKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGNKDWMDAVGE
                     WLGIW"
     gene            complement(1733..2404)
                     /gene="rpiA"
                     /locus_tag="ACFM5C_001424"
     CDS             complement(1733..2404)
                     /gene="rpiA"
                     /locus_tag="ACFM5C_001424"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HFC6069110.1"
                     /translation="MTTQDELKRIAAEKAVEFVPENEYIGIGTGSTINFFIEALGKSG
                     KKIKGAVSTSKKSSELLAQYDIPVVSLNEVSGLAVYIDGADEVNHALQMIKGGGGAHL
                     NEKIVASASEKFVCIADESKYVSRLGKFPLPVEVVESARSLVSRKLLAMGGQPELRIG
                     YTTFYGNQIVDVHGLNIDQPLTMEDEINKITGVLENGIFARDAADVLILGTEEGAKVI
                     YPCQG"
     gene            complement(2481..2963)
                     /gene="ispF"
                     /locus_tag="ACFM5C_001425"
     CDS             complement(2481..2963)
                     /gene="ispF"
                     /locus_tag="ACFM5C_001425"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HFC6069111.1"
                     /translation="MTNIRIGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALL
                     HAVTDALLGAAGLGDIGSHFPDTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVI
                     AQKPKLAPHIPQMRANIAADLGIDISCVNIKGKTNEKLGYLGRMEGIEAQAAVLLVRI
                     "
     gene            complement(2995..3684)
                     /gene="ispD"
                     /locus_tag="ACFM5C_001426"
     CDS             complement(2995..3684)
                     /gene="ispD"
                     /locus_tag="ACFM5C_001426"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HFC6069112.1"
                     /translation="MKRKNIALIPAAGIGARFGADKPKQYVEIGSKTVLEHTIGIFER
                     HEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLEIGLASAD
                     DNILVHDAARCCLPSEALTRLIEQAGNAAEGGILAISIADTLKRAEGGQISATVERTS
                     LWQAQTPQLFRAGLLHRALAAENLDGITDEASAVEKLGIRPLLVQGDARNLKLTQPQD
                     AYIVRLLLNAV"
     gene            complement(3681..4415)
                     /gene="dnaQ"
                     /locus_tag="ACFM5C_001427"
     CDS             complement(3681..4415)
                     /gene="dnaQ"
                     /locus_tag="ACFM5C_001427"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HFC6069113.1"
                     /translation="MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLY
                     VHPERDMPEEAARVHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFL
                     NMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALI
                     DCELLGEVYLAMTRRQFDLMGAAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHG
                     QYLDGLGEACIWRKEAVPSENGGTDA"
     gene            complement(4571..5881)
                     /locus_tag="ACFM5C_001428"
                     /pseudo
     CDS             complement(4571..5881)
                     /locus_tag="ACFM5C_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226214.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(5871..6056)
                     /gene="ccoS"
                     /locus_tag="ACFM5C_001429"
     CDS             complement(5871..6056)
                     /gene="ccoS"
                     /locus_tag="ACFM5C_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFC6069114.1"
                     /translation="MESMFILVPISIILAFVIGWFFWWSGKNGQFDDLEGPAHRILMD
                     DDSTSKLIEKERENDVR"
     gene            complement(6056..6355)
                     /locus_tag="ACFM5C_001430"
     CDS             complement(6056..6355)
                     /locus_tag="ACFM5C_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069115.1"
                     /translation="MHYFSIHDQSGRHIGFFILLADDESEARPQSGRFAVKLEGGMEN
                     HVLSPFGQTEIPQYWRVVKDRIELFFDEAPVGTLRNEYLTVSGQTFVLNDLTGNM"
     gene            6706..7902
                     /locus_tag="ACFM5C_001431"
     CDS             6706..7902
                     /locus_tag="ACFM5C_001431"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6069116.1"
                     /translation="MSQKLILVLNCGSSSLKGAVLDNGSGEVLLSCLAEKLNLPDAYI
                     TFKVNGEKHKVDLSAHPDHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESIL
                     VDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKGLPNVVVFDTSFHQTMPEVAYKY
                     AVPQELYEKYGLRRYGAHGTSYRFVADETARFLGKDKKDLRMVIAHLGNGASITAVAN
                     GESRDTSMGLTPLEGLVMGTRSGDIDPSVFGFLAENANMTIAQITEMLNKKSGLLGIS
                     GLSNDCRTIEEEAAKGHKGAKLALDMFIYRLAKYIGSMAVAAGGLDALVFTGGIGENS
                     DIIRERVIGYLGFLGLNIDQEANLKARFGNAGVITTAGSKAVAVVIPTNEELMIAHDT
                     ARLSGL"
BASE COUNT         1893 a         2400 c         1963 g         1765 t
ORIGIN      
        1 ataaatttgc cacaaaaaag ctgcctcaaa tgaatacccg ggcagctttt tgttgatatg
       61 actccaatca gcggtgttgc ggattgtaac gtttttccaa acgcaggaat atccagccta
      121 agaaagtcgt catcaacaga taaatcaggg cgacggtgta aagcggttct tcataaaccg
      181 aataccggcc cgtaatcgta ttctgaacat acgccaactc cgccacagca atgaccgaca
      241 gcagcgagct gtctttcaag agcgtgatga actcgctcgc caaaggcggc agcatgcggc
      301 gcaatgcctg cggcagaatc acatagcgca tcgcctgcgg ataggtcagc cccaaagaac
      361 gcgccgcctc catctgtcct ttgtctatag actggatgcc cgcgcggaaa atctcacaga
      421 tatacgcccc cgagttggcg atcagtgcca aagaaccggc aatcagcggc ccgtatccgc
      481 gacgcagcgc gattgccgcc tcgccgctga ccaaaatgcc gtctgaagga tggacgaaaa
      541 acggaaacca cacatacgcc caaatcacaa tctgcacaaa cagcggcgta ccccggaaca
      601 gcgtaacata cagcagcgaa actttacgca acgcccacgc cagcacgcgc atcggcgcac
      661 cggctttttc caagtgaatc aggcgcgcca acgccaacaa cagacccaat accgaaccgc
      721 ccgccgtcgc cacgaccgtc agccccaagg tcgtcagtgc gccgtaaagg aacatccagc
      781 ggtattcgta aataatgtca aaacgaaaat ccatataccg tccgtatcaa aaaccggcgg
      841 aactgccgcc gttgcaaaat aatccgccat tttaccgtaa aaaccgccgc ctgaactttt
      901 ttatcgcggc agacggcggt tgcgcgtctc cgcaaaaatg cagggcgcgc ggttttcaga
      961 cggcatttgc cgttcaaagc cgtgcgctgt ctttaccaaa tgcccaacca ttcgcccacg
     1021 gcatccatcc aatccttatt gcccccgccg ctcctgcctg cccggcggta cgcccacggc
     1081 gcttgcggat ttttagcttt ccacaatcct ttgcgttccc tttccgcctg aatttgagcg
     1141 tcggcataat cggcaaaatc cgccttatcc tgctgttctt tagcataact tttataatgc
     1201 cacgccgccc cgtcctgcac ctgcatcagg ttcaaatcgg ttttgccgac agaaacctgc
     1261 gccacttcgc gctggtagcg gtcggtgtcg aacacgcgca cgctgacttt cctgccttcc
     1321 gccgccgcac gcaggttgtc gcgcgaacgc gtgccgtaag cctgtttcat ctccggcgcg
     1381 tcgatatacg ccatccggat tttgtgtttc gcgccgtcgc cgtcgataac gtgaagggtg
     1441 tcgccgtcat agactttgga caccgtgcct gtgtagcggt ggccggattt cgccgatgct
     1501 cggcggcggg cgggcgcgtc ggaacccgcg tcccctgccg cgccgagtac gtcgagtacg
     1561 gcaaccgccg tccgcaccgc ctcgctgccg taccccgtat aacccaacgc acccaaaagc
     1621 gacaaggcga cgggaagcca tttcatgatt tttttaatct gcatattttt caaatgccga
     1681 tgccgtctga acatatcgga atcggatttc agacggcatc ttaacgtcag gattaccctt
     1741 ggcagggata gatgactttc gcaccctctt ccgtccccaa aatcaacaca tcggcggcat
     1801 cgcgggcgaa tatgccgttt tcgagcacgc cggtgatttt gttgatttcg tcttccatcg
     1861 tcagcggctg atcgatattc aagccgtgga catcgacgat ttggttgccg taaaacgtgg
     1921 tgtagccgat acgcagttcg ggctgtccgc ccatagcgag cagtttgcgc gaaacaagag
     1981 agcgcgcgct ttcgacgact tccacaggca gagggaattt gcccaaacgt gaaacatatt
     2041 tgctttcatc cgcaatgcag acgaattttt cggatgcgct ggcgacgatt ttttcgttga
     2101 ggtgtgcgcc gccgccgcct ttaatcattt gcagggcgtg gttcacttca tccgcaccgt
     2161 caatatagac cgccaacccc gatacttcgt tcagggaaac gacgggaata tcatattggg
     2221 caagcagttc actggatttt ttggaagtag ataccgcgcc tttgattttt ttgccgctct
     2281 tacccaaggc ttcgatgaaa aagttgatgg tcgaaccggt accgatgccg atgtattcgt
     2341 tttcgggtac gaattcgact gctttttcgg cggcgatgcg cttgagttcg tcttgtgtcg
     2401 tcatattttt gtcctttggg aaaccgtatc aacaaacagc cgccatctta acattttttt
     2461 gcacgtcctg cccgccgcgt tcaaatcctt accagcaata ccgccgcctg cgcctctatg
     2521 ccttccatgc gcccgagata accgagtttt tcgttggttt tgcctttgat gttgacgcac
     2581 gaaatgtcta tgcccaaatc ggcggcgatg ttggcacgca tttgcggaat atgcggcgcg
     2641 agtttgggtt tctgtgcaat cacggtcgta tcgacattga ccgcctgcca accctgcgcc
     2701 tgaacgcttt gatacgccgc acgcaaaagg acgcggctgt ccgcatcttt gaactctgcg
     2761 gcggtgtcgg ggaaatggct gccgatatcg cccaaacctg ccgcaccgag cagcgcgtcg
     2821 gtaacagcgt gcagcagcgc atcggcatcg gagtgtccga gcagcccttt ttcaaatggg
     2881 atttcaactc cgccaagtat cagctttctg ccttcggtca gttggtggac atcgtagccc
     2941 tgtccgatac ggatgttcgt catcgtttgt gttcctgatg ttttgaattg aagttcagac
     3001 ggcattgagc agcagcctga cgatgtatgc gtcctgcggc tgcgtcagtt tcaaattgcg
     3061 cgcgtcgccc tgcaccagca aagggcggat gcccaatttt tccacggcgg acgcttcatc
     3121 ggtaatgccg tccaagtttt ccgcagccaa tgcgcggtgc agcagccccg cgcggaaaag
     3181 ctgcggcgtt tgtgcctgcc aaaggctcgt ccgctcgaca gtggcactga tttgtccgcc
     3241 ttctgcgcgt ttgagcgtat cggcaatgga aattgccaaa atcccgcctt cggcggcgtt
     3301 gcccgcctgt tctatcaacc gcgtcaaagc ttcagacggc aggcagcagc gcgcggcatc
     3361 gtgtaccaga atattgtcat ccgccgatgc caagccgatt tccaacagtt ttgccacacc
     3421 gtttcggacg gtttcggcgc gggtctgtcc gccgtttttc cacacccgaa cctgtggaaa
     3481 tgccgtctga accttatcgg caaacgtgtc ttcgggcgag acgacaacga cggtcaaatc
     3541 gacggcctca tgccgttcaa aaatcccaat cgtatgttct aaaacggttt tgcttccgat
     3601 ttcgacatat tgcttgggtt tgtccgcacc gaaacgcgcc ccgatgccgg cggcgggaat
     3661 cagcgcgata tttttgcgct tcatgcgtcc gtcccgccgt tttcagacgg cacggcttcc
     3721 ttgcgccaga tacaggcttc gcccaagccg tccaaatatt gcccgtgcgc cgccaactcg
     3781 ttttcgtccg ccctgatgac tttcagttta ccgctgcgtt tggtttcggt atgcaccacg
     3841 ggtttggttt ccattttttc ctctgcggcc gcacccatca ggtcgaactg ccgccgcgtc
     3901 atagcaagat agacttcgcc caaaagttcg cagtcgatca atgcgccgtg caggacgcgc
     3961 ttgctgcggt cgacggaaaa acggttgcac aaggcatcca ggctggcttt ctgcccgggg
     4021 aacatttcgc gcgccatcgc cagggtatcg gtaacggtac agccgagttc ctcaacggtc
     4081 ggcaacccca tccggcggaa ctccatattg aggaagccca cgtcgaattt ggcattgtgg
     4141 ataatcagtt ccgcaccgcg caggaaatcg gcaatctgcc tgccgacctc tgcaaacggc
     4201 ggcgcgtttt tcccttccaa aacctgtatc gtcaagccgt ggacgcgtgc cgcctcttcg
     4261 ggcatatcgc gctcggggtg gacatagagg tgcaggtttt tgtcggtcat ttggcggttg
     4321 accatttcca aaccggcaaa ctcgaccaag cggtcgccgc cgtcggcata cagaccggtg
     4381 gtttcggtat cgaggatgat ttggcgtgtc gtcatatcgg tgtctttctt ctatcttcgt
     4441 aaattgctta ttttttaagc aatgtatttt tctgttttca tttcaatgca caaacccact
     4501 tattcacagt gtgttcacaa cattgggcag gcggattgtg tattttgggg acaatttttt
     4561 cagacggcat tcaaggtttt ttcctgattg ccgccgcgcc taaaaaccgc ctttcgcgct
     4621 taatcaaaaa taccgacaac ggaatattgc ccaaagcgac aatcagatac aacaaggaaa
     4681 tgctgtcaaa caaaaacagc aacaccgcgc tcaaaacggc ggcggaaacc ataaaaatac
     4741 cgttaacgat attgttggcg gcaacggcgc gggcgcggaa agtctcgcta ctggcggttt
     4801 gcagctaggt atagagcgga acggagaaaa atccgccgaa aaagccgatc agcgtcatca
     4861 ccgccatcac gggatatgcc catccttgcg ataaaaacca aaaaatgccg ttcagccctt
     4921 caaaacggtg tccgtgcgtc agccacacca aaaccaggcc gcaaaccgtc aaacccaacg
     4981 caccaaccgt tacccaagcc aacatcaggc gttccctgct gaacttggca cacagtaccg
     5041 aaccggcggc aataccgatg gaaaacaggg caagcatcag gttgaaaaca ttgtcgttgc
     5101 cgcccagatg gatttgggta aaggtcggca gttgcgtggt ataaaccgcg ccgacaaacc
     5161 aaaaccacga aataccgata atagcggtaa agacgggttt gtaccgcacc gtttcacgaa
     5221 gcagggattt tgtgccacgg acaatattcc actcaatttg ggtatcggca gccttggcgg
     5281 ggacggacgg cataaacagg ctgccgaccg tgcctccgac ggcgaccagc aaaaccagta
     5341 tcccgacaat ataaggcggt acacctgcca ccgccgttcc caaaatctga ccgaacagga
     5401 tggcgacaaa cgtacccgat tcaatcaggc tgttgcccat catcaactct ttgtcgtcga
     5461 gataatcggg caggatggcg tatttcagcg gcccgaacag cgtcgattgc gcgcccatgc
     5521 aaaacagaca cgccaaaagc agcggggcag accggatata aaacccgtat gccgccaccg
     5581 ccataatgat catttccagc accttgaccc aacgcgccaa aacggccttg tcgaatttgt
     5641 tacccaactg ccccgacagc gaggaaaaca ggaaatacgg caaaataaac aacaacgcgc
     5701 ccaagttcaa catctgtccg gcaggcagga agccgttttg ccccaaaccg taaaacccaa
     5761 tcatcacaaa cagcgcggtt ttgaacacat tgtcgttgaa cgcgccgaga aactgcgtag
     5821 cgaaaagagg tgcgaaacgg cggcttttaa ccagtcccaa accgcctttt ttagcgtaca
     5881 tcgttttccc tctctttttc aatcagttta cttgtcgaat catcatccat caggatgcgg
     5941 tgcgccggcc cttccaagtc gtcaaactgc ccgtttttgc ccgaccacca aaaaaaccag
     6001 ccgatgacaa acgccaaaat aatgctgatg ggcaccaata taaacatgct ttccatcaca
     6061 tattccctgt caaatcgttc aaaacaaaag tctgccccga cacggtcaga tattcgttac
     6121 gcaaagttcc gacgggagct tcgtcaaaaa acagctcgat acggtctttg accacgcgcc
     6181 aatattgggg gatttccgtc tgaccgaacg gcgacaggac atgattttcc attccgcctt
     6241 caagtttgac ggcaaaacgc ccgctttgcg gccgtgcttc cgattcgtcg tcggcaagca
     6301 ggatgaaaaa gcctatatgc cgtcccgatt ggtcatgaat actgaaataa tgcataaatt
     6361 tcccacccgc cttttttcag acgacaccaa ctaaaaacag ggcgaatgta ccagtttgga
     6421 cgggaagaat gcaaagaaat tctccctccc ccagccgaaa acaccggcaa accgcatatc
     6481 cccctttttt ccgtcaaaat gcccgacttc cgccattttc acgcaaacgc ccgattaagc
     6541 caagcaattg caaagatttt ttgctagaat agcctgcttc ttttatcaac cttttcagac
     6601 ggccccacta ctttcccgcc caggaaggca aaacggattc ggcacgaatc cggttagtat
     6661 ccgtgtccga ttccaatgcc gtctgaaact ttccggagta agaaaatgtc ccaaaaattg
     6721 atcttggttt tgaactgcgg cagctcgtcc ctcaaaggcg cggtcctgga taacggcagc
     6781 ggcgaagtcc tgctcagctg ccttgccgaa aaactcaacc tgcccgatgc ctacatcaca
     6841 ttcaaagtaa acggcgaaaa acacaaagtc gatctgtccg cacatcccga ccacaccggc
     6901 gcggtcgaag ccctgatgga agaactcaaa gcccacggcc tcgacagccg catcggcgcc
     6961 atcggccacc gcgtcgtcag cggcggcgaa ctgtacagcg aatccatcct cgttgacgac
     7021 gaagtcattg ccggcatcga aaaatgcatc ccgctcgccc ccctgcacaa ccccgcccac
     7081 ctcttgggcc tgcgtgccgc gcaaagcatt ttcaaaggcc tgcccaacgt cgtcgtattc
     7141 gatacctcct tccaccaaac catgcccgaa gtcgcctaca aatacgccgt tccgcaggag
     7201 ttgtatgaaa aatacggcct gcgccgttac ggcgcgcacg gtaccagcta ccgcttcgtc
     7261 gccgacgaaa ccgcgcgctt cctcggcaaa gacaaaaaag acctgcgtat ggtcattgcc
     7321 cacttgggca acggcgcgtc catcaccgcc gtcgccaacg gcgaatcgcg cgacaccagt
     7381 atgggcctga ccccgctgga agggctggta atgggtacgc gcagcggcga catcgatcct
     7441 tccgtattcg gcttcctcgc cgaaaacgcc aatatgacca tcgcccaaat cactgaaatg
     7501 ctgaataaaa aatccggtct gctcggcatt tccggcctgt ccaacgactg ccgcaccatt
     7561 gaagaagaag ccgccaaggg gcataaaggc gcgaaattgg ccttggatat gtttatctac
     7621 cgccttgcca aatacatcgg cagtatggcg gttgccgcag gcggtttgga cgcactggtc
     7681 tttaccggcg gcatcggcga aaactccgac atcatccgcg aacgcgtgat cggctacttg
     7741 ggcttcctcg gtctgaacat cgaccaagaa gccaacctga aggcacgctt tggcaacgcc
     7801 ggcgtgatta ccactgccgg cagcaaagcc gttgccgtgg tcattccgac caacgaggaa
     7861 ttgatgattg cacacgatac cgcccgcttg agcggtctgt aagattcaat ccccacgcga
     7921 actgcctccg aaaacggagg cagttttttt atccggcttt ccatgcttaa acagcaccgc
     7981 ctcttttcag acgttgacgg ttgcagccgc ttacctgaac c
//
LOCUS       DAXHNP010000094         7961 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.094, whole genome shotgun sequence.
ACCESSION   DAXHNP010000094 DAXHNP010000000
VERSION     DAXHNP010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7961
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.094"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..3815)
                     /gene="hrpA"
                     /locus_tag="ACFM5C_001432"
     CDS             complement(<1..3815)
                     /gene="hrpA"
                     /locus_tag="ACFM5C_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion exoprotein HrpA"
                     /protein_id="HFC6069117.1"
                     /translation="MNKGLHRIIFSKKHSTMVAVAETANSQGKGKQAGSSVSVSLKTS
                     GDLCGKLKTTLKTLVCSLVSLSMVLPAHAQITTDKSAPKNQQVVILKTNTGAPLVNIQ
                     TPNGRGLSHNRYTQFDVDNKGAVLNNDRNNNPFVVKGSAQLILNEVRGTASKLNGIVT
                     VGGQKADVIIANPNGITVNGGGFKNVGRGILTTGAPQIGKDGALTGFDVRQGTLTVGA
                     AGWNDKGEADYTGVLARAVALQGKLQGKNLAVSTGPQKVDYASGEISAGTAAGTKPTI
                     ALDTAALGGMYADSITLIANEKGVGVKNAGTLEAAKQLIVTSSGRIENSGRIATTADG
                     TEASPTYLSIETTEKGAAGTFISNDGRIESKGLLVIDTGEDIGLRNGAVVQNNGNRPA
                     ATVLNAGRNLVIESKANVNNAKGSTNLSTGGRTVIKEASIQTGTTVYSSSKGNAELGN
                     NTRITGADVTVLSNGTISSSAVIDAKDTAHIEAGKPLSLEASTVTSDIRLNGGSIKGG
                     KQLALLADDNITAKTTNLNTPGNLYVHTGKDLNLNVDKDLSAASIHLKSDNAAHITGT
                     SKTLTASKDMGVEAGSLNVTNTNLRTNSGNLHIQAAKGNIQLRNTKLNAAKALETTAL
                     QGNIVSDGLHAVSADGHVSLLANGNADFTGHNTLTAKADVNAGSVGKGRLKADNTNIT
                     SSSGDITLVAGNGIQLGDGKQRNSINGKHISIKNNGGNADLKNLNVHAKSGALNIHSD
                     RALSIENTKLESTHNTHLNAQHERVTLNQVDAYAHRHLSITGSQIWQNDKLPSANKLV
                     ANGVLALNARYSQIADNTTLRAGAINLTAGTALVKRGNINWSTVSTKTLEDNAELKPL
                     AGRLNIEAGSGTLTIEPANRISAHTDLSIKTGGKLLLSVKGGNAGAPSAQVSSLEAKG
                     NIRLVTGETDLRGSKITAGKNLVVATTKGKLNIEAVNNSFSNYFPTQKAAELNQKSKE
                     LEQQIAQLKKSSPKSKLIPTLQEERDRLAFYIQAINKEVKGKKPKGKEYLQAKLSAQN
                     IDLISAQGIEISGSDITASKKLNLHAAGVLPKAADSEAAAILIDGITDQYEIGKPTYK
                     SHYDKAALNKPSRLTGRTGVSIHAAAALDDARIIIGASEIKAPSGSIDIKAHSDIVLE
                     AGQNDAYTFLKTKGKSGKIIRKTKFTSTRDHLIMPAPVELTANGITLQAGGNIEANTT
                     RFNAPAGKVTLVAGEELQLLAEEGIHKHELDVQKSRRFIGIKVGKSNYSKNELNETKL
                     PVRVVAQTAA"
     gene            complement(3924..5603)
                     /gene="hrpB"
                     /locus_tag="ACFM5C_001433"
     CDS             complement(3924..5603)
                     /gene="hrpB"
                     /locus_tag="ACFM5C_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion system transporter HrpB"
                     /protein_id="HFC6069118.1"
                     /translation="MEIINDAELIRSMQRQQHIDAELLTDANVRFEQPLEKNNYVLSE
                     DETPCTRVNYISLDDKTARKFSFLPSVLMKETAFKTGMCLGSNNLSRLQKAAQQILIV
                     RGYLTSQAIIQPQNMDSGILKLRVSAGEIGDIRYEEKRDGKSAEGSISAFNNKFPLYR
                     NKILNLRDVEQGLENLRRLSSVKTDIQIIPSEEEGKSDLQIKWQQNKPIRFSIGIDDA
                     GGKTTGKYQGNVALSFDNPLGLSDLFYVSYGRGLAHKTDLTDATGTETASGSRSYSVH
                     YSVPVKKWLFSFNHNGHRYHEATEGYSVNYDYNGKQYQSSLAAERMLWRNRLHKTSVG
                     MKLWTRQTYKYIDDAEIEVQRRRSAGWEAELRHRAYLNRWQLDGKLSYKRGTGMRQSM
                     PAPEENGGGTIPGTSRMKIITAGLDAAAPFMLGKQQFFYATAIQAQWNKTPLVAQDKL
                     SIGSRYTVRGFDGEQSLFGERGFYWQNTLTWYFHPNHQFYLGADYGRVSGESAQYVSG
                     KQLMGAVVGFRGGHKVGGMFAYDLFAGKPLHKPKGFQTTNTVYGFNLNYSF"
     gene            5550..6533
                     /gene="repM"
                     /locus_tag="ACFM5C_001434"
     CDS             5550..6533
                     /gene="repM"
                     /locus_tag="ACFM5C_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="HFC6069119.1"
                     /translation="MLLTLHGTDKFCIVNNFHTNRNTAYKALKDTCNNLFERQFSFIE
                     KTPKGEKVVRTRWVSQVAYIEQQATVELVFAPNVAPLITMLEKNFTSYELDQVSSLSS
                     KYAVRLYEIIISWRAAGKTPMFSTMELRERLGMMPDEYQKMELFKRKVLDFAVKQIND
                     KTDISITYEQHKEGRKIVGFTFSILHKIGSKDIPLENQSELFAGMTDLEAGTIRVRAE
                     AYIASLIAKGQNVTKAHRLNILKKAVEERWGFEDVAKDNGAKNPENKNAKVVLNEWEK
                     ISNGTRFKDKDGTIWVKDSGMLRTEGTNRWIADSQIAKLFPMLTVMVEEGI"
     gene            6630..7046
                     /locus_tag="ACFM5C_001435"
                     /pseudo
     CDS             6630..7046
                     /locus_tag="ACFM5C_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
     gene            complement(7052..7150)
                     /locus_tag="ACFM5C_001436"
                     /pseudo
     CDS             complement(7052..7150)
                     /locus_tag="ACFM5C_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            7243..>7961
                     /locus_tag="ACFM5C_001437"
     CDS             7243..>7961
                     /locus_tag="ACFM5C_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFC6069120.1"
                     /translation="MNRTLYKVVFNKHRNCMIVVAENAKREGKNTADTQAVGILPNDI
                     AGFAGFIHSISVISFSLSLLLGSALILTSSSANAQGIVADKSAPAQQQPTILQTGNGI
                     PQVNIQTPTSAGVSVNQYAQFDVGNRGAILNNSRSNTQTQLGGWIQGNPWLARGEARV
                     VVNQINSSHSSQMNGYIEVGGRRAEVVIANPAGIAVNGGGFINASRATLTTGQPQYQA
                     GDLSGFKIRQGNVVIAGHGLDA"
BASE COUNT         1929 a         1818 c         1949 g         2265 t
ORIGIN      
        1 gctgcagttt gggcgacgac gcggacaggc aatttggttt cgttcagttc gtttttactg
       61 taattgctct tacctacctt gatgccgata aagcggcggc ttttttggac atccaactcg
      121 tgcttgtgga tgccttcttc tgccagcagt tgcagctctt cacccgcaac cagggtaact
      181 ttacctgcag gggcattgaa gcgggtggta ttagcttcga tgttgccgcc tgcctgaagc
      241 gtgataccgt tggcggtcag ctcgacgggg gctggcataa tcaggtggtc gcgggtgctg
      301 gtaaacttgg tttttctgat gattttgccg cttttacctt tggtttttaa gaaggtatag
      361 gcatcgtttt gtccagcctc cagtacaata tcactatggg ctttgatgtc tatgctgcct
      421 gagggagctt tgatttcgga tgcaccgata ataatacgtg catcatcgag tgccgcagct
      481 gcatgaatac ttacccccgt acgtccggtc aaacgtgaag gcttgttcag agcagctttg
      541 tcgtagtgac tcttgtaggt gggcttgcca atttcatatt ggtcggttat gccgtcaatc
      601 agaatagcag ccgcctctga atctgctgcc tttggcaata cgcctgcggc gtgaaggttc
      661 agttttttgg aagcggtaat atcggaaccg ctgatttcga tgccttgtgc ggaaatcaag
      721 tcaatatttt gtgcagaaag cttggcttgc agatattctt tgcctttggg ttttttacct
      781 ttaacttcct tgttgatggc ttgaatatag aaagcgagac ggtcgcgttc ttcttgcagg
      841 gttggaatca gcttgctttt aggcgagctt tttttcaact gcgcaatctg ctgttccaat
      901 tctttggatt tttggttgag ttcagccgct ttttgtgtag gaaaataatt gctgaatgag
      961 ttgtttacgg cttcgatatt caacttgcct ttggtggtgg cgacaaccaa gtttttaccg
     1021 gctgtaattt tagaacctct taaatctgtt tctcctgtaa ccagacggat attgcctttt
     1081 gcttccaatg aggaaacttg agcactaggc gcacctgcat ttcctccttt tacagacaac
     1141 agcaattttc cgcctgtttt gatgctcagg tcggtatgcg cactgatgcg gttggcaggt
     1201 tcgatggtta atgtgccgct acctgcttca atattcagcc gtccggccaa tggttttaat
     1261 tcggcattat cttccaaagt tttggtcgaa acggtactcc aattgatgtt gccgcgcttg
     1321 actagggcgg taccggcagt aaggttgatt gcacccgctc tcagcgtggt gttgtcggca
     1381 atttgggaat agcgcgcatt gagtgccaat acaccgttag ccaccagctt gttggcagaa
     1441 ggcagtttgt cgttttgcca aatctggctg ccggtaatgc ttagatgacg gtgtgcgtag
     1501 gcatctactt ggttgagcgt tacccgctcg tgttgtgcat taagatgcgt attatgggta
     1561 gactccagct tggtattttc tatgctcaat gcccggtcgg aatgaatgtt caatgccccg
     1621 cttttggcat ggacgttaag gttttttaag tcggcattac caccgttgtt tttgatgctg
     1681 atgtgttttc cgttgattga attgcgttgt tttccgtcac caagctgaat accgttgccg
     1741 gcaaccaacg taatatctcc tgaagatgaa gtgatattgg tattgtctgc tttcagacgg
     1801 cctttaccaa ccgatcctgc attgacatcg gccttggctg tcagggtatt gtgaccggta
     1861 aagtcggcat taccgttggc caataaggat acatgaccgt ctgcagaaac agcatgaagg
     1921 ccgtctgaaa cgatattgcc ctgcaatgcg gtggtttcga gagccttggc tgcgttcagc
     1981 ttggtattgc gaagctgaat attgcctttg gctgcctgaa tgtgcagatt acccgagttg
     2041 gtacgcagat tggtattggt aacattcagc gagcctgcct ccacacccat gtcttttgag
     2101 gcagtgaggg ttttactggt gccggtaata tgggcagcgt tatccgattt caaatggatg
     2161 ctggcggcag acaaatcttt atcaacattc aaattcagat ctttacctgt atgaacatac
     2221 agattgccgg gagtattcag attggtagtt ttggcagtaa tgttatcgtc tgccagtaaa
     2281 gcaagctgct tgccgccctt gatactgcct ccgtttaagc ggatatcgga ggtaactgtt
     2341 gaagcttcca aagaaagcgg tttgcctgct tcgatgtgtg cggtgtcttt ggcatctatt
     2401 acggcggaac tgctgatggt gccgttggat aatacggtaa catctgcccc ggtaatgcgt
     2461 gtgttattgc ctaattcggc gttgcctttg ctggaactgt atacggtagt gccagtctga
     2521 atactggcct ccttgatgac ggtacggccg ccggtcgaca gattggtcga acctttagca
     2581 ttgttcacat ttgctttgct ttcgataacc aaattacggc cggcatttaa taccgtagca
     2641 gcagggcggt tgccgttgtt ttgaacgacc gctccgttac gcaaaccgat gtcctccccg
     2701 gtatcaataa ccaataagcc tttgctctcg atccgaccat cattggagat aaatgtgcct
     2761 gccgctcctt tttcggtggt ttcgatggag agataagtcg gtgaagcttc ggtgccgtcg
     2821 gcagtggtgg cgatgcggcc gctgttttca atgcggcctg acgaagtcac aatcaattgc
     2881 ttggccgctt cgagtgtgcc ggcatttttg acgcctacgc ctttttcatt ggcaatcagt
     2941 gtgatgctgt cggcgtacat accgcccagt gcggcagtat caagggcaat agtcggtttc
     3001 gtacccgctg ccgtacctgc actgatttcg ccgctggcgt aatctacttt ctgaggaccg
     3061 gtagaaaccg ccaggttttt accctgtaat ttcccctgca aagcaactgc acgagcaagt
     3121 accccggtgt agtcggcttc gcctttatca ttccaacctg ctgctcctac ggtcaatgtg
     3181 ccttgacgca catcaaatcc tgtcagtgca ccgtctttgc cgatttgggg cgcaccggta
     3241 gttaagatgc cccgaccgac atttttaaag ccgccgccat taacggtaat gccgttgggg
     3301 ttggcaataa tcacgtcggc cttttgaccg cctacggtaa cgatgccgtt gagtttgcta
     3361 gccgtaccgc gtacctcgtt caaaatcaat tgcgcactgc ctttgaccac aaacggatta
     3421 ttgttacggt cgttgtttaa cactgcccct ttgttgtcaa catcaaactg cgtatagcgg
     3481 ttgtggctca atccgcgtcc attcggagtt tggatattca ccaagggggc accagtgttg
     3541 gttttaagga taacgacctg ctggttttta ggtgctgatt tgtcggtggt aatttgggca
     3601 tgggcaggca ataccatact cagggaaacc aaagagcaga ccaaagtttt aagggtggtt
     3661 ttgagtttgc cgcaaaggtc gcctgaagtt ttcagtgaaa cagaaaccga actgcctgcc
     3721 tgtttacctt tgccctggct gttggcagtt tcggctactg caaccatggt gctgtgcttt
     3781 ttactaaaga taatgcgatg taaaccttta ttcatgtcta ttccattttg aagatgaacg
     3841 tactgcgcgc caagtacgta ggtaaagttt gacggtctga ggataaggaa agaccgtcta
     3901 aatatcagta aaaaattcag aggttagaaa ctgtaattca agttgaagcc gtaaacggtg
     3961 ttggtcgtct gaaagccttt gggtttatga agcggcttgc cggcaaacag atcataagca
     4021 aacataccgc ctactttatg ccctcctctg aagccgacca ctgcacccat cagctgcttg
     4081 cccgatacat attgtgcact ttcgccagat acgcggccat agtccgcacc gagatagaac
     4141 tgatggttcg gatgaaaata ccaagttaaa gtattctgcc agtagaaacc tcgctctccg
     4201 aaaagactct gctccccatc aaatccgcga acggtgtagc ggctgccgat tgacaattta
     4261 tcttgggcaa ccaacggcgt tttgttccat tgagcttgaa tggcggttgc gtagaaaaac
     4321 tgctgtttgc ccaacataaa cggggccgct gcatccaatc cggcggttat gattttcata
     4381 cgggatgtgc ctggaatagt accgccgccg ttttcttcag gtgcgggcat actttggcgc
     4441 ataccggtcc cgcgtttgta agacaacttg ccgtcaagct gccaacggtt gaggtaagca
     4501 cggtggcgca attcggcttc ccagcctgca gagcggcggc gttgcacttc gatttcggca
     4561 tcgtcgatgt atttataggt ttggcgtgtc cataatttca ttccgactga agttttatga
     4621 agtctgttac gccaaagcat gcgctcggcg gccaagctgc tctgatattg tttgccgttg
     4681 taatcgtaat tgacggaata gccttcggtt gcttcgtggt aacgatgtcc attgtgatta
     4741 aaagaaaaca gccatttttt tacgggcacc gaataatgca cgctgtaact tctggatccg
     4801 cttgcagttt ccgtaccggt ggcatcagtc aagtccgttt tgtgcgccaa accgcgtcca
     4861 tatgaaacat aaaacaaatc gcttaagccc aaagggttat cgaacgataa agcgacattt
     4921 ccttgatatt tgccggtcgt tttgccgccc gcatcatcta taccgatact gaaccgtatg
     4981 ggtttattct gctgccattt gatctgtaaa tcgcttttgc cttcttcttc ggacggtata
     5041 atctgaatat ctgttttaac actcgacaaa cgacgcaggt tttccaagcc ctgctctaca
     5101 tcgcgaagat tgagaatttt gttcctatat aagggaaatt tgttattgaa tgcactaata
     5161 ctgccttcgg cagacttccc atcccgtttt tcttcatagc ggatatcccc tatttcgcct
     5221 gctgataccc gtaatttcag aattcccgaa tccatattct gtggttggat aatagcttgg
     5281 gaagtgaggt agccacgcac aatcagtatc tgttgcgcgg ctttttgtag cctgctcaaa
     5341 ttattggaac ctaaacacat cccagtttta aaagctgttt ctttcatgag cacagaagga
     5401 agaaaagaaa atttgcgcgc cgtcttatca tctaaactaa tgtaatttac ccgagtacac
     5461 ggtgtttcat cttcactcag gacataattg ttcttctcca atggttgctc gaaacggaca
     5521 tttgcatcag ttaacaattc agcatctatg tgctgctgac gctgcatgga acggataagt
     5581 tctgcatcgt taataatttc cataccaacc gtaatacggc gtataaggct ttgaaagata
     5641 cctgtaacaa cctttttgaa cgccaattca gttttatcga aaaaacacca aaaggggaaa
     5701 aggtagtacg gacaaggtgg gtatctcaag tcgcctatat tgaacaacag gcaacggtag
     5761 agttagtttt tgcaccaaat gttgcccctt tgattacgat gctagaaaaa aacttcacaa
     5821 gctacgagct tgatcaggtc tcatcgttga gcagtaaata cgcggtgcgg ctctacgaaa
     5881 ttattatttc atggcgtgca gccggtaaga caccgatgtt cagtacaatg gagttgcgcg
     5941 aacgtttggg tatgatgcct gacgagtatc aaaaaatgga gctattcaaa cgtaaggttt
     6001 tggatttcgc cgtcaagcag atcaatgata aaacggatat ttccattacc tacgagcagc
     6061 ataaagaagg acgaaaaatt gtaggtttta cattctcaat cctacataaa atagggtcga
     6121 aagacatccc tcttgaaaat caatcggaac tttttgccgg aatgactgat ttggaagccg
     6181 gaacgatacg ggtcagggcg gaagcatata tcgcttcgct cattgcaaaa ggtcagaacg
     6241 tgactaaagc ccataggctg aatattctga aaaaagccgt agaggaacgt tggggatttg
     6301 aagatgtggc taaagataat ggggccaaaa atcctgaaaa caaaaatgca aaagtcgttt
     6361 taaacgaatg ggaaaagatt tctaatggca cacgttttaa ggacaaggat ggaacaattt
     6421 gggttaaaga ttcaggtatg cttaggactg aagggacaaa caggtggata gccgattctc
     6481 agattgccaa attatttcct atgttaactg tgatggttga ggaaggtatt taacccggca
     6541 actcgcgtat tctacctgtt ttgcggtacg gaaaccaatt gaacctgctt tacgctacaa
     6601 tagaagattg caattttgtc ggatgtacca tgaacgatta cacagccatg ccgtctgaag
     6661 acggaggaat cggctcatta tcgcttccgc cgcactcaat ggaggcggaa caatccgttt
     6721 tgggcgggtt gatgctggaa aatccggctt gggacaggat tgccgatgtg gtttcgggag
     6781 aggatttcta ccgccacgaa caccgcctga ttttccgatc cattgccaaa ctgatcaatg
     6841 agagccgtcc tgccgatgtc atcacggttc aggaagattt gcagcggaac gaagagctgg
     6901 aagcggcggg gggattcgaa tatctgatta cgctggcgca aaatactccg tctgccgcca
     6961 acatccggcg ccatgccgaa atcgtgcgcg agcgttccat tatgcgccaa ctcgccgaag
     7021 tgggaacgga aattgcccgc agcgccatac ccaaaatatc ggcagcggaa cgggcggtag
     7081 cttggagtac gaaaaattca agcagtttct tttgaactct attgtttaat ttacaattgg
     7141 ttatctttat tttcgtagcc tggcataact gttaatctac gtcagcccct aaaaattaat
     7201 ctaatttacg attataaaaa tattattaag aaagccctta ctatgaaccg caccctgtac
     7261 aaagttgtat ttaacaaaca tcgaaactgc atgatagtcg ttgctgaaaa tgccaaacgc
     7321 gagggcaaaa acacagccga cacccaagct gtaggtattt tgccaaatga tattgcgggc
     7381 tttgcgggtt ttatccattc tatctctgtt atctcattct ccctttcatt actgctcggt
     7441 tctgccctta tcctgacttc ttcttctgct aatgcccaag gtatcgttgc cgacaaatcc
     7501 gcacctgcac agcaacagcc taccatcctg caaacaggta acggcatacc gcaagtcaat
     7561 attcaaaccc ctacttcggc aggggtttct gttaatcaat acgcccagtt tgatgtgggt
     7621 aatcgcgggg cgattttaaa caacagtcgc agcaacaccc aaacacagct aggcggttgg
     7681 attcaaggca atccttggtt ggcaaggggc gaagcacgtg tggttgtaaa ccaaatcaac
     7741 agcagccatt cttcacaaat gaatggctat attgaagtgg gcggacgacg tgcagaagtc
     7801 gttattgcca atccggcagg gattgcagtc aatggtggtg gttttatcaa tgcttcccgt
     7861 gccactttga cgacaggcca accgcaatat caagcaggag accttagcgg ctttaagata
     7921 aggcaaggca atgttgtaat cgccggacac ggtttggatg c
//
LOCUS       DAXHNP010000095         7900 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.095, whole genome shotgun sequence.
ACCESSION   DAXHNP010000095 DAXHNP010000000
VERSION     DAXHNP010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7900
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.095"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(253..627)
                     /locus_tag="ACFM5C_001438"
                     /pseudo
     CDS             complement(253..627)
                     /locus_tag="ACFM5C_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(933..2192)
                     /gene="rho"
                     /locus_tag="ACFM5C_001439"
     CDS             complement(933..2192)
                     /gene="rho"
                     /locus_tag="ACFM5C_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFC6069121.1"
                     /translation="MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMK
                     KGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVR
                     VPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGR
                     AIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTE
                     MSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNT
                     VVPTSGKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEE
                     FKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDE
                     IEATEFLNGKIKASKNNDDFFELMRGK"
     gene            complement(2412..4796)
                     /gene="ppsA"
                     /locus_tag="ACFM5C_001440"
     CDS             complement(2412..4796)
                     /gene="ppsA"
                     /locus_tag="ACFM5C_001440"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HFC6069122.1"
                     /translation="MADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGG
                     FATTADAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDA
                     EIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLENVKEAMRH
                     VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVF
                     VTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKS
                     VTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQAR
                     PETVKSQEEGSRNLRRFSINGEKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDV
                     LVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQE
                     VTVSCAEGDTGFIYAGLLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGI
                     GLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVAT
                     LAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFA
                     LECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCEL
                     PSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAIS
                     ACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANELNK"
     gene            5207..6028
                     /locus_tag="ACFM5C_001441"
     CDS             5207..6028
                     /locus_tag="ACFM5C_001441"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HFC6069123.1"
                     /translation="MSSPRHVFYISDRTGLTAENIGEALLNQFGNLSFKRHTHPFVDT
                     PEKARAVVEKVNRSRQENGQRPIAFVSVVDDEIRRIIKGADAFQINFFETFLGLLEKE
                     LNTEATASEQGHHSIGNTKRYDARMEAVNFSLNHDDGVSDKNLQEADVILMGVSRSGK
                     TPTCLYLALQYGIRAANYPLIPDDLESADLPRMVKPYRDKLFGLTIQPERLQAIRQER
                     RPNSTYAKIDTCRSEVADAQSMFRRHGIPFANTTDKSVEELAVHILQACKLKRRF"
     gene            complement(6268..6930)
                     /locus_tag="ACFM5C_001442"
     CDS             complement(6268..6930)
                     /locus_tag="ACFM5C_001442"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6069124.1"
                     /translation="MIHAVLFDLDGTLADTALDLGGALNTLLARHGLPAKSMDEIRTQ
                     ASHGAAGLIKLGAGITPDHPDYARWRTEYLEEYDRRYAQDTELFDGVNELIAELNQRG
                     IKWGIITNKPMRFTDKLVPKLGFIIPPAVVVSGDTCGEPKPSIKPMLYACGQIHADPQ
                     HTLYVGDAERDIQAGRNAGMKTVLAEWGYISDEDDTDSWQADFHIRTPLDLLECLDKI
                     QP"
     gene            complement(6943..7770)
                     /locus_tag="ACFM5C_001443"
     CDS             complement(6943..7770)
                     /locus_tag="ACFM5C_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFC6069125.1"
                     /translation="MKLDIYALLERALLSGDPDEKGRLTDEAFAAVQNMDGAETNTPP
                     ADFPRAGRPDKPVLVAPSQLTPRKMNTAEGYAAMLHAIAHIEFNAVNLALDAAYRFRT
                     LPFQFVRDWVKVAKEEVYHFRLMRDRLRAFGFDYGSFEAHNHLWDMAYKTAYDPLLRM
                     ALVPRVLEARGLDVTPGIRAKVAQRGDSETCGVLDIIYRDEVGHVAIGNHWYQHLCRE
                     RGLEPVALFRSLITRYDMFIFRGYVNIEAREKAGFSRFELDMLEDFEQGLKQNKNTV"
BASE COUNT         1699 a         1886 c         2256 g         2059 t
ORIGIN      
        1 caacggcgac aggtgtttgc actcatgggc attggcggag gtatagtgga ttaacaaaaa
       61 tcaggacaag gcgacgaagc cgcagacagt acaaacagta cggaacccat tcacttggtg
      121 cttcagcacc ttagagaatc gttctctttg agctaaggcg aggcaccgcc gtactggttt
      181 ttgttaatcc actataaaaa tttatggggc tgtcctagat aactaggata aactcgattt
      241 tactaattgt tttcaaatgg aaatttgaac ttttatctca ctgttgttaa aacgtcgttc
      301 gtaccccttt aaatacagct caaaatgcgc tttgggaatg ccgtcaaact tgcgtaaatg
      361 acgttttgcc cggtttcaaa agttcccaat tccattgata tggttttgtc gttcagcaaa
      421 ataactttca tctgcttcta ctttgccgtc aaacatttcc aaatgcggac tgttttgata
      481 aataagtaat cgtaaacgat gaaaataata ggctgcggta tttttattaa cgcctactaa
      541 ctctgctgct gttcttgcag ttacacctgc gacaaacagt tcaatgagtt tattttgttt
      601 atactggctt agacgacttt ttctcatagg ggcaactcta acttaatttg aatttcccta
      661 gttatctagg acagccccaa atttatacaa aaatgagcgc ggttcggcgc aaccttgaat
      721 caagttcccg catcggtttt cattgccggt acggatgcgt tcaagccggt ttttcaaagg
      781 ccgcgctttc ggcaagcgga cacggacact gccgacggtt gcgccgttaa cggggggagg
      841 gaggagctgc gccgaccgtg tgaatgaaag tgccgtctga aacccgattt tcaggcttca
      901 gacggcattt cgcattaatg cgggcggcgc gtttatttgc cgcgcatcag ttcaaagaaa
      961 tcgtcgttgt ttttagaggc tttgattttc ccgtttaaga actcggtagc ttcgatttca
     1021 tccatcgggt gcaggaactt gcgtaagagc cacatacgtt gcaactggtc gttcggcaca
     1081 agcagctctt cgcggcgcgt gccggatttg ttgatgttga tggcggggaa gaggcgtttt
     1141 tccgccatac ggcgatcaag gtgcaattcc atattgccgg tgcctttgaa ttcttcgtaa
     1201 atcacatcgt ccatacggct gccggtttca accaatgcgg tggcgataat ggtcagcgaa
     1261 ccgccttctt ccacgttgcg cgccgcaccg aagaaacgtt tggggcggtg cagcgcgttg
     1321 gcatcgacac cgccggttag gattttgccc gaggtaggca cgacggtatt gtaggcgcgg
     1381 gcaaggcggg taatcgaatc cagcaggatg accacgtctt ttttgtgttc taccatacgc
     1441 ttggcttttt caagcaccat ttcggcaact tggacgtggc gttgcgccgg ttcgtcaaag
     1501 gtggaggaaa ccacttcgcc gcggacggaa cggctcattt cggttacttc ttcgggacgc
     1561 tcgtcaatca agaggacgat gagttcgact tcgggatagt ttgaggtaac ggcgtgggca
     1621 atgttttgca gcatcacggt tttaccgctt ttgggcgggg caaccaagag ggcgcgctga
     1681 cctttgccga tgggcgaaat caggtcgatg gcacgtccgg tcaggttttc ttcggacttt
     1741 aagtcgcgtt ccagcttcaa ctgttcggtc ggaaacagcg gggtcaggtt ttcaaacagg
     1801 attttatggc ggcatacttc cgggtggtcg ccgttgatgg tatcaagcct gaccagggca
     1861 aaatagcgtt cgttgtcttt tgggacgcgg acgctgcctt cgatggtgtc gcccgtatgc
     1921 aggttgaagc ggcggatttg ggtgggcgag acatagatgt cgtcggggcc ggcaagatag
     1981 gacgtgtccg cgctgcggag gaagccgaag ccgtcgggca ggatttcaag cgtgccggag
     2041 caggtgaaac cctcgccttt tttcatcatc tggcggacga tggcaaatac gaggtcttgt
     2101 ttgcggaatc ggttggcgtt ttcgatgccg tgttcttccg ccaattctaa gagtttggaa
     2161 atgtgcaggg tttgtaattc ggagacgtgc ataataatga tgtattttga agaggaaaaa
     2221 gacaggcaga tgccgtctga aagaagaagc tgaccgttgc cggttgctcg gggaaagggg
     2281 aattgtaggc agtcggcgcg tgggtgtcaa atattatcgc ggacggggca tcggcaggaa
     2341 atgccgtctg agcggagctg cttggaaaaa aatacccccg cgcttttcag gctcgggggt
     2401 atgggcattg attatttgtt caattcattc gccaaataca gccaagtttc gatgacggta
     2461 tccgggttca gggaaacgct ttcaatgcct tcctcaacca gccatttggc gaagtccgga
     2521 tggtcggacg ggccttgacc gcagatgccg acatatttgt tctgcttgcg gcaggcggag
     2581 atggcaaggt gcagcatcac tttgacggca gggttgcgtt cgtcaaacga ttcggatacc
     2641 aagccgctgt cgcggtcgag accgagggtc agttgggtca tgtcgttcga gccgatggag
     2701 aagccgtcga agtattgcag gaattgttcc gccaataccg cgttgctcgg cagctcgcac
     2761 atcataatca ggcgcaggcc gtttttgccg cgttccaagc cgttttcttt cagggctttg
     2821 acaacggctt cggcttcgcc caaggtgcgg acgaacggaa tcatgatttc aacgttggtc
     2881 aaccccattt catcgcggac gcgtttcaag gctttgcatt ccaaggcgaa acagtctttg
     2941 aagttgtcgg cgacataacg cgccgcgccc cggaagccca acatcgggtt ttcttcatgc
     3001 ggttcgtata cgttgccgcc gactaggttg gcgtattcgt tggatttgaa gtcggacata
     3061 cggacgatgg ttttacgcgg ataaaccgat gcggccaatg tcgccacgcc ttcggcgatt
     3121 ttatcgacgt agaagtcgac aggggacgcg taaccggcga tgcggcgggt aatttccgct
     3181 tttaattcgt cgtcttgttt gtcaaattcc aacaaggctt tcgggtggat accgatttgg
     3241 cggttgatga taaattccat acgcgccaag ccgatgcctt cgctcggcag gttggcgaag
     3301 ctgaatgcga gttcgggatt gccgacgttc atcatcactt tgacaggtgc tttgggcata
     3361 ttgtccaagg cgacatcggt aatctgtacg tccaacaggc cggcatagat gaagccggta
     3421 tcgccttcgg cgcaggatac ggtaacttcc tgaccgtttt tcagcaattc ggttgcattg
     3481 ccgcagccga cgacggcagg aatgcccaat tcacgcgcga taatcgctgc gtggcaggta
     3541 cgtccgccgc gattggtaac gatggcggaa gcgcgtttca tcaccggttc ccaatccgga
     3601 tcggtcatat cggtaaccag tacgtcgccg gcttcgacgg aatccatctc ggaagcatct
     3661 ttaatcaggc gtactttgcc ctgtccgact ttctgaccga tggcgcggcc ttcgcacaag
     3721 acggtttttt cgccgttgat agaaaagcgg cgcaggttgc ggctgccttc ttcttgggat
     3781 ttcacggttt cgggacgggc ttgcaggata tagagtttgc cgtccaagcc gtcgcgaccc
     3841 cattcgatat ccatcgggcg gccgtagtgt ttttcgatgg tcagcgcgta atgcgccaac
     3901 tcggtgattt cttcgtcggt aatggagaag cggttgcggt cttcttcggg gacatcgacg
     3961 ttggttaccg atttgccggc ttcggctttg tcggtaaaaa tcattttgat gtgtttcgaa
     4021 cccatggttt tacgcaggat ggcgggcttg cccgctttga gcgtaggttt gaacacataa
     4081 aattcgtccg ggttgaccgc gccttgtacg acgttttcgc ccagaccgta agaggaggta
     4141 acaaagacga cttgatcgta gccggattcg gtgtcgaggg tgaacatcac acctgatgcg
     4201 ccactgtcgg aacgcaccat gcgttgaacg ccggcggaaa gggcgacgat gtcgtgttcg
     4261 aagcctttgt ggacgcggta ggaaatggcg cggtcgttgt acagggaggc gaatacatgg
     4321 cgcatcgctt ctttaacgtt ttccaagccg ttgatgttca agaaggtttc ctgttgtccg
     4381 gcaaatgatg cgtccggcag gtcttcggcg gttgcggaag agcgtacggc aacggaaatg
     4441 tccgcaccgc cggcatcggc aaccattttg ttccatgccg cttcgatttc ggcatcgagc
     4501 tgttcgggga agggcgtgtc caaaatccat tggcggattt ctttgccgac gcgtgccagt
     4561 tcggcaacgt cttcgacatc caattttgcc agtgcggcgg aaatgcgttc gctcagaccg
     4621 ttgtgtgcga ggaatgcgcg gtaggcatcg gccgtggtgg caaagccgcc ggggacgcga
     4681 acgccttttt cggtcagctg actaatcatt tcacccagcg aggcgttttt accgcccacg
     4741 cgttcaacat ctgtcatacg caggttttca aaccagatta cgtagttgtc ggccatttgt
     4801 gtgtccaatc caaaatatgt taaaaaagaa acaaatccgc gtgcttattt taagcgattc
     4861 gttcctctgc tgtcatgtgt tttatccgtt ttaaaatcat gatgccgtct gaaaaattgc
     4921 ggtttcggcg tgtgtagcgg tttgaaactt gcagccggta tacttctttt tttgggtatt
     4981 ttctttgtaa aacaggtggt ttgaataggt taatgttttt tctgtttgat ttttttgttt
     5041 attttttaaa attttctgcc aaaaaatact ttatataaat aattttattt caaaattata
     5101 ttgtgtctgt ttgggtgtaa tccgaggtag gcgtgctgcg ggtgctttcc ttgtgtctgc
     5161 cgctgctgtt atgatgatat ttttattctg tatttaagga tggaagatga gcagtccgcg
     5221 ccatgtgttt tacatttccg accgtaccgg tctgactgcc gagaatatcg gcgaggcttt
     5281 gctgaaccag tttggcaatc tgtcgttcaa acgccatacg catccgtttg tcgatacgcc
     5341 ggaaaaggcg cgcgcggtgg tggagaaggt caatcggagc cggcaggaaa acggtcagcg
     5401 tccgattgcg tttgtcagtg tggttgatga cgaaatccgt cggattatca aaggggcgga
     5461 tgcttttcag attaatttct ttgagacttt tttgggactg ttggagaaag aactcaatac
     5521 cgaagccacg gcatccgagc aggggcatca cagtatcggt aatacgaagc gttacgatgc
     5581 gcgtatggag gcggtaaatt tctcattgaa ccacgatgac ggggtcagcg ataagaacct
     5641 tcaggaagcg gatgtaatct tgatgggtgt atcgcgttcg ggcaaaacgc cgacctgcct
     5701 ttacctcgcc ctgcaatacg gcatccgtgc ggcaaactat ccgctgattc ctgacgattt
     5761 ggaatcggcc gatctgccgc gtatggtcaa gccttatagg gataagctgt tcgggttgac
     5821 catccagccg gaacgtttgc aggccatccg ccaagagcgc cgcccgaatt caacttatgc
     5881 caaaatcgat acatgccgca gcgaggtggc agacgcgcag agtatgttca gacggcatgg
     5941 gattccgttt gcgaatacga cggataaatc agtggaagag cttgccgtac acatccttca
     6001 ggcgtgcaag ctcaaacgca ggttttgacg ggttttgatt cggtttgaag gtggaaatgc
     6061 cgtctgaaat caggtttcag acggcagttt tatagtggat taacaaaaat catgacaagg
     6121 cgacgaagcc gcagacagta caaatagtac ggagccgatt cacttggtgc ttcagcacct
     6181 tagagaatcg ttctctttga gctaaggcga ggcaacgctg tactggttta gatttaatcc
     6241 actatatgtt tgtggggcgg atatttttca gggctgtatt ttgtccagac attcgagcag
     6301 atcgagcggc gttcggatgt ggaaatccgc ctgccatgag tcggtatcgt cttcatctga
     6361 gatgtagccc cattcggcga ggacggtttt catgccggcg ttgcggcctg cttggatgtc
     6421 gcgttcggca tcaccgacgt agagtgtgtg ttgcgggtcg gcgtggattt gtccgcacgc
     6481 atacagcatg ggtttgatgc tgggcttggg ttcgccgcag gtgtcgccgc tgacgacgac
     6541 ggcgggtggg atgatgaagc cgagtttggg gacgagtttg tcggtgaagc gcatgggttt
     6601 gttggtgatg atgccccatt tgatgccgcg ttggttgagt tcggcaatga gttcgttcac
     6661 gccgtcaaag agctcggtgt cttgggcgta gcggcggtcg tattcctcca gatattcggt
     6721 gcgccatcgg gcatagtcgg ggtggtcggg ggtgatgcct gcgccgagtt tgatcagtcc
     6781 tgccgcgccg tggctggctt gggtgcggat ctcgtccatg ctttttgcag gtagtccgtg
     6841 gcgagcgagc agggtgttga gtgcgcctcc gaggtcgagg gcggtgtcgg caagtgtgcc
     6901 gtcgaggtcg aagagtacgg cgtgtatcat gtgtgttcct tttcagacgg tatttttgtt
     6961 ctgtttcaaa ccctgctcga aatcttccag catatccaat tcaaagcggc tgaagcccgc
     7021 tttttcgcgc gcttcgatgt tcacatagcc gcggaagata aacatatcgt aacgggtaat
     7081 cagactgcgg aacagggcga caggttccaa accgcgttcg cggcagaggt gttgatacca
     7141 atggttgccg atggcgacat ggcccacttc gtcgcggtaa atgatgtcca atacgccgca
     7201 ggtttccgaa tcgccgcgct gcgccacctt cgcgcgtatc cccggcgtaa cgtccagccc
     7261 gcgcgcttcc aacacgcgcg gtaccaacgc catacgcaac agcgggtcgt aggcggtttt
     7321 gtacgccata tcccacaaat ggttgtgcgc ctcgaaactg ccgtaatcga agccgaaagc
     7381 gcgcaatctg tcgcgcatca ggcggaaatg gtacacctct tccttcgcca ctttcaccca
     7441 gtcgcggaca aactgaaacg gcagcgtgcg gaaacggtat gccgcgtcca aagctagatt
     7501 gacggcgttg aattcgatat gcgcaatcgc gtgcagcatc gccgcatagc cttctgccgt
     7561 gttcattttg cgcggggtca gttgcgacgg cgcgaccaaa acaggcttgt ccggccgtcc
     7621 cgctcggggg aagtccgccg gcggcgtgtt tgtttcagca ccgtccatgt tctgaacggc
     7681 ggcaaacgcc tcatccgtca gccgtccttt ttcatctggg tcgcccgaaa gcagggcgcg
     7741 ttccagcaaa gcataaatat cgagtttcat ctcaagtccg ccgtgttcgg aaaacaaata
     7801 ttatagcgtt ttaaaaaaaa caagatgagg catataatct ccgcgattcg gcattccgcg
     7861 cccaaaccgt caaatatagt ggattaacaa aaaccggtac
//
LOCUS       DAXHNP010000096         7869 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.096, whole genome shotgun sequence.
ACCESSION   DAXHNP010000096 DAXHNP010000000
VERSION     DAXHNP010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7869
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.096"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            433..957
                     /gene="nspA"
                     /locus_tag="ACFM5C_001444"
     CDS             433..957
                     /gene="nspA"
                     /locus_tag="ACFM5C_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein NspA"
                     /protein_id="HFC6069126.1"
                     /translation="MKKALATLIALAIPAAALAEGASGFYVQADAAHAKASSSLGSAK
                     GFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLG
                     ARLSLNRASVDLGGSDSFSQTSTGLGVLAGVSYAVTPNVDLDAGYRYNYIGKVNTVKN
                     VRSGELSAGVRVKF"
     gene            1093..1482
                     /locus_tag="ACFM5C_001445"
     CDS             1093..1482
                     /locus_tag="ACFM5C_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6069127.1"
                     /translation="MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVV
                     GNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPF
                     PARAAVGVASLPKGVQVEAEAVLVLNA"
     gene            1560..2390
                     /locus_tag="ACFM5C_001446"
     CDS             1560..2390
                     /locus_tag="ACFM5C_001446"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HFC6069128.1"
                     /translation="MAHYAIGDIQGCFDELTALLGKIGFNHGTDTLWLTGDIVNRGPK
                     SLETLQFCIRHENSVQIVLGNHDLHLLAVGCGEGAPKRSDTIEPILKHPDGKKMLDWL
                     RAQPLLIREGSRVMVHAGILPQWRIAKAESLAREAEAELRGKKYVKFFSKMYGNKPAA
                     WDEGLEGYARLRFIVNAFTRMRALTFKNELDFDYKSTVKKMPPYLRPWFKAPDRQNLD
                     RTIIFGHWSSLGYTNADNVISLDTGALWGGQLTAVNLETEEITQVQAAGGIDWKSFAK
                     "
     gene            2405..3862
                     /locus_tag="ACFM5C_001447"
     CDS             2405..3862
                     /locus_tag="ACFM5C_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFC6069129.1"
                     /translation="MHKILPIAHVLSRLGMLFSFILLIPAALSYAFSDGAYTAFATTA
                     TVTLSGSCIVRLATLRFRRELRPRDGFTLVLMLWLAFAAMAAMPMYLYFPNMGFTDAF
                     FESMSGLTTTGATVIPHVDGLAPSVNFWRHMLNWLGGMGIIVLAVAILPMLGVGGTQL
                     FKAEIPGIDKESKMSPRISQVAKKLWFGYTLITILAAACLHFAGMGWFDAVCHAMATL
                     SLGGFSTHDASIAYYNSPLIEAVIIVFTIVGGINFANHFAALNSRSLKTYWKDEECRT
                     MLLLLSGSILAAALYLWHTGYYAGFTESLRYTAFNFVSIGLANGLANTDFAQWPLLIS
                     LWMFFLANILANSGSTGGGIKTIRALVLFKFSLREMMVLLHPKAVRTVKISGKAIPDR
                     LALTVMSFIFIYFMTVVLFSFLLMASGMEFTTAFTAVIACITNAGPGLGEVGPAGNYA
                     GLDVMQKWICVTAMLLGRLEIFTVFILFTPAYWKK"
     gene            complement(3903..4292)
                     /locus_tag="ACFM5C_001448"
     CDS             complement(3903..4292)
                     /locus_tag="ACFM5C_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069130.1"
                     /translation="MWKISKENCEDLGFAIVCMFYDAINLSEFKLWLDIVVRDTPIDT
                     IPLYIFDLIDFDKSIGEIYDVIGVVNYGYISNDQKNALTGIAFLRGIDVYDPPISKEK
                     ALKALEKYPEIYQRFQHFFPFVELPLF"
     gene            complement(4474..4875)
                     /locus_tag="ACFM5C_001449"
     CDS             complement(4474..4875)
                     /locus_tag="ACFM5C_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069131.1"
                     /translation="MKIKPLQFSNNSRRFYVDKICVTEQDVNILASDRNYELNIEIFI
                     DNIIHFQITDESYKVKFSEYLFENKEKNDWDRNPAINYFFEIIDDSYMDWLKEESFDF
                     FEKKYYKAYIFFFSDSVIEVISSTEPVFYSK"
     gene            complement(4983..5162)
                     /locus_tag="ACFM5C_001450"
     CDS             complement(4983..5162)
                     /locus_tag="ACFM5C_001450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069132.1"
                     /translation="MPSETVFNFQATFPLFETGYWELSSSKILHLLLPRQHLGQNGRR
                     LKSKHCHQPFEDRME"
     gene            complement(5181..5558)
                     /locus_tag="ACFM5C_001451"
     CDS             complement(5181..5558)
                     /locus_tag="ACFM5C_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6069133.1"
                     /translation="MCEFKDFRRNIPCFKEYDENSFIGKWYDDGVWDDEEYWKLENAL
                     IEVRRKYPYPMDIPRDIVIGIGSIIEFLMVPNWKLFTIKSSPWLPKSIKINERYERFR
                     VMLRYIFTEKDIVNVRFDYYNKK"
     gene            complement(5589..5987)
                     /locus_tag="ACFM5C_001452"
     CDS             complement(5589..5987)
                     /locus_tag="ACFM5C_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6069134.1"
                     /translation="MCEFKDFRRNIPCFKEYDENSFIGKWYDDGVWDDEEYWKLENDL
                     IEVRRKYPYPMDIPRDIVIGIGSIIDFLMVQNWKLFEIKASPWLPKSVKINERYERFR
                     VMLRYIFTDLDVEDWKFFYFPIQHSKGRLR"
     gene            complement(5993..6639)
                     /locus_tag="ACFM5C_001453"
                     /pseudo
     CDS             complement(5993..6639)
                     /locus_tag="ACFM5C_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670623.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
     gene            complement(6803..7120)
                     /locus_tag="ACFM5C_001454"
     CDS             complement(6803..7120)
                     /locus_tag="ACFM5C_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069135.1"
                     /translation="MNILPSWLRVGMNIAMLGMIHSDIRLITVDYEEGRRFLKIKNYL
                     SREAITEDHEDMEYLITELWSMCGEYFDEADFECIYSNHSSMELNQINGAVFRRKELI
                     SQA"
     gene            complement(7123..>7869)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001455"
     CDS             complement(7123..>7869)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6069136.1"
                     /translation="IKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKL
                     DRWGNSMEFINGVAAGALNPFISAGEAVDQWMQENPNAAETVEALVNVLPFAKVKNLT
                     KAAKPGKAAVSGDFSDSYKHNTASRLSQSVDGEMFQTRNVDFKAKSIGTKIHDGAQGK
                     HISGHRNYIEGKSTLNQNINPQELLNGIHSGAYPVISKGARGNPVVDFGYPIGSDGKS
                     GLSTNFGTIHSGKNGVHIVPANPKTIKKVQ"
BASE COUNT         1967 a         2152 c         1602 g         2148 t
ORIGIN      
        1 cgcaaacaaa tcggcggccg cccgggaaaa cccgccccga acgcgtccgg aaaatatgct
       61 tatcgatgga aaacgcagcc gcatcccccg ccgggcgttt cagacggcac agccgccgcc
      121 ggaaatgtcc gacgcttaag gcacagacgc acacaaaaaa ccgtatgcct gcacctgcaa
      181 caatccgaca gataccgctg ttttttccaa accgtttgca agtttcaccc atccgccgcg
      241 tgatgccgcc accaccattt aaaggcaacg cgcgggttaa cggctttgcc gtcggcaaag
      301 cagccggata ccgctacgta tcttgaagta ttgaaaatat tacgatgcaa aaagaaaatt
      361 taagtataat acagcaggat tctttaacgg attcttaaca atttttctaa ctgaccataa
      421 aggaaccaaa atatgaaaaa agcacttgcc acactgattg ccctcgctat cccggccgcc
      481 gcactggcgg aaggcgcatc cggcttttac gtccaagccg atgccgcaca cgcaaaagcc
      541 tcaagctctt taggttctgc caaaggcttc agcccgcgca tctccgcagg ctaccgcatc
      601 aacgacctcc gcttcgccgt cgattacacg cgctacaaaa actataaagc cccatccacc
      661 gatttcaaac tttacagcat cggcgcgtcc gccatttatg acttcgacac ccaatcgccc
      721 gtcaaaccgt atctcggcgc gcgcttgagc ctcaaccgcg cctccgtcga cttgggcggc
      781 agcgacagct tcagccaaac ctccaccggc ctcggcgtat tggcgggcgt aagctatgcc
      841 gttaccccga atgtcgattt ggatgccggc taccgctaca actacatcgg caaagtcaac
      901 actgtcaaaa acgtccgttc cggcgaactg tccgccggtg tgcgcgtcaa attctgatat
      961 gcgccttatt ctgcaaaccg ccgagccttc ggcggttttg ttttctgcca ccgcaactac
     1021 acaagccggc ggttttgtac gataatcccg aatgctgcgg cttctgccgc cctatttttt
     1081 gaggaatccg aaatgtccaa aaccatcatc cacaccgaca aagcccccgc cgccatcggc
     1141 gcgtacagcc aagccgtccg agcaggcgac accgtttaca tgagcggtca aatccccctc
     1201 gatcccgcca cgatgaccgt cgtcggcaac ggcgatttcc gcgccgaagc gcgccaagtg
     1261 ttccaaaacc tgcaagccgt cgccgaagcg gcaggcggca cgctggccga catcgtcaaa
     1321 ctcaacgcct acctgaccga cttgggcaat tttgccgtct tcaacgaagt gatggcggaa
     1381 tttattgccg agcccttccc cgcccgcgcc gccgtcggcg ttgcctccct gccaaaaggc
     1441 gtgcaggtcg aagccgaagc cgtcctcgtt ttgaacgcat aattccacgt tcggactgca
     1501 tgatatttca aaaccatgcc gtccgaaccg caacactttc ccacttcaca acatctgcaa
     1561 tggcacatta cgcaatcggc gacatacaag gctgtttcga cgaactgacc gcgctgctcg
     1621 gcaaaatcgg tttcaaccac ggcacggaca ccctctggct gacgggcgac atcgtcaacc
     1681 gcggcccgaa atccctcgaa acgctgcaat tctgcatccg gcacgaaaac agcgtgcaaa
     1741 tcgtcctcgg caaccacgac ctgcacctgc tcgctgtcgg ctgcggcgaa ggcgcgccca
     1801 aacgcagcga cacaatcgaa cccatactca aacaccccga cggaaaaaaa atgctcgact
     1861 ggctgcgtgc gcaaccgctg ttgatacgcg agggcagccg cgtgatggta cacgccggca
     1921 tcctgccgca atggcgcatc gccaaagccg aatcgctcgc tagagaagcc gaagccgaac
     1981 tgcgcggcaa aaaatacgtc aaattcttct ccaaaatgta cggcaacaaa ccggccgcgt
     2041 gggacgaagg tttggaaggc tatgcccgcc tgcgcttcat cgtcaacgcc ttcacgcgga
     2101 tgcgcgccct gacctttaaa aacgaactgg atttcgacta caaatccaca gtgaaaaaaa
     2161 tgccgcctta cctgcgcccg tggttcaaag cccccgaccg gcaaaacctc gaccgcacca
     2221 tcatcttcgg acactggtcc tcgctgggct acacgaatgc cgacaacgtc atctcgctgg
     2281 acaccggcgc gctgtggggc ggacagctga ccgccgtcaa cctcgaaacg gaagaaatta
     2341 cccaagtcca agccgccggc ggcatagact ggaaaagctt cgcaaaataa cggaccgccc
     2401 cactatgcac aaaatcctgc ccatcgccca cgtcctctcc cgactgggta tgctgttttc
     2461 ctttatcctg ctgatacccg ccgccctctc ctacgccttt tcggacggcg cgtacaccgc
     2521 cttcgccacc accgcgaccg ttaccctttc cggctcgtgc atcgtccggc tcgccaccct
     2581 ccggttcagg cgcgaactgc gcccgcgcga cggcttcacc ctcgtcctga tgttgtggct
     2641 ggcgtttgcc gctatggcgg cgatgccgat gtacctgtat ttcccgaata tgggctttac
     2701 cgacgcattt tttgaatcga tgtcgggact gaccaccacc ggcgcgaccg tcatccccca
     2761 cgtcgacggg ctcgccccct ccgtcaactt ttggcggcat atgctcaact ggctgggcgg
     2821 gatgggcatc atcgtccttg ccgtcgccat cctgcctatg ctcggcgtag gcggcacgca
     2881 gttattcaaa gccgaaatcc ccggcattga caaagaaagc aaaatgtcgc cgcgcatttc
     2941 ccaagtggcg aaaaaacttt ggttcggcta caccctgatc accatcctcg cggcagcctg
     3001 cctgcatttt gccgggatgg gctggttcga tgccgtctgt cacgcgatgg cgaccctctc
     3061 gctgggcggg ttttccaccc acgatgccag catagcttat tacaactccc ccctcatcga
     3121 agcggtcatc atcgttttca ccattgtcgg cggcatcaat tttgccaacc atttcgccgc
     3181 cctcaacagc cgcagcctca aaacctattg gaaagacgaa gaatgccgga cgatgctgct
     3241 gctgctctcc ggcagcatcc ttgccgccgc cctgtacctg tggcacaccg gctattacgc
     3301 cggttttacc gaatccctgc gctacaccgc cttcaacttc gtctccatcg gactggcaaa
     3361 cgggctggcc aacaccgact tcgcacaatg gccgctcctg atttccctgt ggatgttttt
     3421 cctcgccaac atcctcgcca actccggctc gaccggcggc ggcatcaaaa ccatacgcgc
     3481 cctcgtcctg ttcaaattca gcctgcgcga aatgatggtg ctgctgcacc ccaaagccgt
     3541 ccgcaccgtc aaaatcagcg gcaaggccat acccgaccgc ctcgcgctga ccgttatgtc
     3601 cttcatcttc atctacttta tgaccgtcgt cctcttcagc ttcctgctga tggcgagcgg
     3661 tatggaattt accaccgcct tcaccgccgt catcgcctgc atcaccaacg ccggccccgg
     3721 cctgggcgaa gtcgggcccg ccggcaatta cgccggtttg gacgtgatgc agaaatggat
     3781 ctgcgttacc gccatgctct tgggcaggct ggaaatcttc accgtcttca tcctcttcac
     3841 ccccgcctac tggaagaaat aaaaaatgcc gtctgaaaac ttttcagacg gcatattgtc
     3901 ttttaaaaaa gcggaagctc tacaaaagga aagaaatgct gaaacctctg ataaatttca
     3961 ggatatttct ctaaggcttt taatgctttt tcttttgaaa taggcggatc atagacatct
     4021 atccccctta agaaggcaat gcccgttaat gcattttttt gatcatttga aatgtaacca
     4081 taattaacga ctccaattac atcataaatt tcccctatac tcttatcaaa atcaatcaaa
     4141 tcaaaaatat acaatggaat tgtatcaata ggagtatctc tgacaactat atccaaccat
     4201 aatttaaatt cagaaagatt aatagcatca tagaacatac agactattgc aaatcctaaa
     4261 tcttcacaat tttctttact aattttccac ataattattt acctttatcc attgcttccc
     4321 aaccgataca tccggtattt tagattctcc tttgccgtca aacgctcttt tggttacctg
     4381 ctttgtatca aaaatgccgt ctgaaagccg aataccgctt cagacggtat tttgattgtt
     4441 gggtttttaa tcagagcttt gtttgataat ttgttatttt gaataaaata caggttctgt
     4501 cgagctgata acttctatta cagaatcgct aaaaaagaaa atataagcct tataatattt
     4561 cttttcaaaa aaatcaaaac tttcttcttt caaccagtcc atataactgt catctattat
     4621 ctcgaaaaaa taatttatag caggatttct atcccaatca tttttttctt tattttcaaa
     4681 taaatattct gaaaatttta ctttataaga ttcatctgtt atttgaaaat gaattatatt
     4741 gtcaataaat atttcaatat ttaattcata atttcggtcg gatgccaaaa tgttcacatc
     4801 ttgttcggta acacaaattt tgtctacgta aaatctgcga ctattgttag aaaattgtaa
     4861 tggtttaatc ttcactatcg ttttccatat ctgatttttg ttttggtaac acgacgatcg
     4921 gggtttcagc gacaccgagg tattttaccg tctaatcgtg gagattttac cgattttctt
     4981 tcctattcca tccggtcttc aaatggttga tgacagtgtt tgcttttcag ccgtctgccg
     5041 ttctgaccaa ggtgctgccg tggaaggagc aggtgtagga tttttgaaga acttagttcc
     5101 caatatcctg tttcaaataa ggggaaggtc gcctgaaaat taaacacggt ttcagacggc
     5161 attttgattg ccggggtttg ctattttttg ttgtaataat caaatcgtac gttgactatg
     5221 tctttctcgg taaaaatata acggagcatt actctgaacc tttcataacg ctcattaatt
     5281 ttgatacttt taggcaacca aggggaagat ttaattgtaa aaagtttcca atttggaacc
     5341 attaaaaact caataatgct accgattcca atcacgatat cccttggtat atccatcgga
     5401 taaggatatt ttctcctaac ctcgattaaa gcattctcca atttccaata ttcttcatca
     5461 tcccacaccc cgtcatcata ccatttgcca ataaatgaat tttcgtcata ctccttaaaa
     5521 caagggatgt ttcttctaaa atccttgaac tcgcacataa taatgtatct ccaatataat
     5581 taaacttttc atctcaatct acctttacta tgttgtattg gaaagtaaaa aaatttccag
     5641 tcctctacat ctagatcagt aaaaatataa cggagcatta ctctgaacct ttcataacgc
     5701 tcattaattt tgacactttt aggcaaccaa ggggaagctt taatttcaaa aagtttccaa
     5761 ttttgaacca ttaaaaaatc aataatgcta cctattccaa tcacgatgtc ccttggtata
     5821 tccatcggat aaggatattt tctcctaacc tcgattaaat cattctccaa tttccaatat
     5881 tcttcatcat cccacacccc gtcatcatac catttgccaa taaatgaatt ttcgtcatac
     5941 tccttaaaac aagggatgtt tcttctaaaa tccttgaact cgcacatcat aattaatctc
     6001 caatacgatt taggttttta tcaaatgtac cgtttcttgt ttcttttctg ttcagcttct
     6061 tgggtgaaga tgcttctttc caagcccctc cattatgtga atctacatcg cgtgatatat
     6121 aactctttcc ttttttaaaa atagcagcat catttctcgt tctttctttt atttttctat
     6181 atcccaattt ctttgctgct gcatatgctt ctgaatcatt cccatatacg ggggtagatg
     6241 gtgtttttct tggcggacac gcattatgaa cccaaacccc ttccgttccg cctgattacc
     6301 cttgacgaag taggtatgcc agtcggcaac ggtcagattg taggctttga gcggctgctg
     6361 tttgagggta atgttttgaa ccgtctgttt tgcaccgctt tcggaaagca gggtgtcgcc
     6421 ttttttcaga cgacctgcct gtatccactt tccttgactg taaaacgggt ggattttatt
     6481 ggaaacgagg gtctgtattt taccgatgcc gtctgaaatt tcaatgtaaa cggtttcttg
     6541 atacggattg ccgtatcggg cggtaacggg tttgtatccc gtttttccgc ttgcctcgtc
     6601 cttggcgaag acgcggtcgc cggttcggat acgggcaatg gcttttcagc cgtctgccgt
     6661 tttgaccaag gtgctgccgt ggaaggagca agtgtaggat ttttgaagaa ctcagttctc
     6721 aatatcctat ttcaaacgaa ggaaatgccg tctgaaaatt aaacacggtt tcagaagaca
     6781 ttgtgattgt tggtttttta acctacgctt gcgaaattaa ttcctttctc ctgaatactg
     6841 caccatttat ttggtttaac tccatagaag aatgattaga ataaatacat tcaaagtcag
     6901 cttcatcaaa atattctcca cacatagacc ataactctgt aatcaaatat tccatatctt
     6961 catggtcttc tgtgatggct tctcttgata aataattttt gatttttaaa aaccttcttc
     7021 cttcctcgta atctacggta attaacctga tatctgagtg tatcatgccc agcattgcta
     7081 tattcatacc gactcgcagc cagcttggta atatattcat aactattgca cctttttaat
     7141 ggttttaggg ttagccggaa caatgtgaac tccattttta cctgaatgaa tcgtaccaaa
     7201 attggtactt aatcctgatt tcccatcgct gcctatagga tacccaaaat caacaacagg
     7261 atttcctctt gctcctttag aaataactgg ataagcacct gaatgtattc cgttcaacaa
     7321 ttcttgagga ttaatgtttt gatttaaagt actcttacct tcaatgtagt ttctatgtcc
     7381 tgaaatatgt ttcccttgag ctccatcatg aattttagtc ccaatagatt ttgctttaaa
     7441 atcaacattg cgggtttgaa acatttctcc atctacagac tgagataatc ttgaagcagt
     7501 gttatgcttg taggagtctg agaaatcccc actaaccgca gccttccccg gttttgccgc
     7561 ctttgtcagg tttttgactt tggcaaacgg caggacgttg accagggctt cgacggtttc
     7621 ggcggcattg gggttttcct gcatccactg gtcaacggct tcgcccgcgc tgataaaggg
     7681 gttgagcgcg ccggcggcga cgccgttgat aaactccatg ctgttgcccc agcggtcgag
     7741 cttggcattg tgctcgaaca tttttctgtt ggcttcatcg gcgcggtcgg agaaattgct
     7801 gccgaggttg ctgtaattgt cggatatgcg ttgccggatg ctgcgggtgt cggtcggatt
     7861 gagtttgat
//
LOCUS       DAXHNP010000097         7867 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.097, whole genome shotgun sequence.
ACCESSION   DAXHNP010000097 DAXHNP010000000
VERSION     DAXHNP010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7867
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.097"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            42..506
                     /locus_tag="ACFM5C_001456"
     CDS             42..506
                     /locus_tag="ACFM5C_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HFC6069137.1"
                     /translation="MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRL
                     EREHYISGYHAHLNPHLLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVS
                     GEYDYLIKVRLPDMSAYRDMLGNILLQLPAASESRSYVVMEEVKENPVLDLD"
     gene            1264..1752
                     /locus_tag="ACFM5C_001457"
     CDS             1264..1752
                     /locus_tag="ACFM5C_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HFC6069138.1"
                     /translation="MTPLFRKAVWLLFAVSVCAFAGSLAAQYVLGMEPCVLCISQRLC
                     VLATALCTAIVLMCRPRRRAGGLFGAVFISIPAVTGISVAAYQLWLQSLPPGTAPSCG
                     APWTFRLKGWSLFDWFEPVVRGFGNCAEPDYLLGVALPVWSAAYFLAVVLTVWWAWAR
                     AK"
     gene            complement(1811..2539)
                     /locus_tag="ACFM5C_001458"
     CDS             complement(1811..2539)
                     /locus_tag="ACFM5C_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFC6069139.1"
                     /translation="MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPG
                     ANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCL
                     TDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGA
                     EDVVTNDDGSIEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQ
                     KLIDALEDLDDVQDVYTSAVLNLD"
     gene            2866..4284
                     /locus_tag="ACFM5C_001459"
     CDS             2866..4284
                     /locus_tag="ACFM5C_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6069140.1"
                     /translation="MENILSVLVGTVNRFLWDYLLIYALLGIGLFFTLYLGAPQITKL
                     GAGFKSVFGGLFAKGDKDDKSLSQFQALAVAISAQIGTGNVAGVATAITAGGPGAIFW
                     MWVSAVLGMSTIFAEALLAQKYRVVSHGKYIGGPAFYITHGLTPKIGRGAARFLSGFF
                     SIALIIALGFIGNATQANSIASAVTIAFDVPSLAVGIVLAVLAGMVVIGGVNRIANIA
                     QFVVPFMAVVYILCAVVILFEFSDHIVPMFNHIFTAAFNPEAVLGGAAGIGMREAIRF
                     GVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDTILVCTATALIILLTD
                     ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGWYYFGESNIRFLFRGR
                     HLGIYRALVLLAIVLGTLGKVDLVWSLSDMFNGFMVIPNLIALFLLRKEIRAIYDDYL
                     AQKKAGRDLSYPYEFHEFHDKG"
     gene            complement(4348..4974)
                     /locus_tag="ACFM5C_001460"
     CDS             complement(4348..4974)
                     /locus_tag="ACFM5C_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HFC6069141.1"
                     /translation="MYTGERFNTYSHLSGLILAAAGLALMLLKTIGHGDGYRIFSVSV
                     YGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWT
                     VFSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVLAVMKSLTASLPSAGLAW
                     LAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSVYGYVI"
     gene            5117..6457
                     /locus_tag="ACFM5C_001461"
     CDS             5117..6457
                     /locus_tag="ACFM5C_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2868 domain-containing protein"
                     /protein_id="HFC6069142.1"
                     /translation="MLNPSRKLVELIRILDEGGFIFSGDPMQATEALRRVDGSTEEKI
                     IRRAEMIDRNRMLRDTLERVRAGSFWLWVAAATFAFFTGFSGTYLLMGNQGLNFFLVL
                     AGVLGMNTLMLAVWLATVFLRVRVGHFFSSPATWFRGKDPVNQAVLRLYADEWRQPSV
                     RWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLSNAASVRAVEMLAWLPS
                     KLGFPVPDARAVVEGRLNGNIADAQAWSGLLVGSIACYGILPRFLAWVVCKILLKTSK
                     NGLDLEKPYYQAVIRRWQNKITDADTRRETVSAVSPKIVLNDAPKWAVMLETEWQDGE
                     WFEGRLAQEWLDKGVATNREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLS
                     EAAQGGAVVQLLAEQGLSDDLSEKLEHWRNALAECGAAWLEPDRAAQEGRLKDQ"
     gene            6531..>7867
                     /locus_tag="ACFM5C_001462"
     CDS             6531..>7867
                     /locus_tag="ACFM5C_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase/DUF3482 domain-containing protein"
                     /protein_id="HFC6069143.1"
                     /translation="MNKQPLSLAVVGHTNTGKTSLLRTLLRDSGFGEVKNAPSTTRHV
                     EEAAISDGADTLVFLYDTPGLEDAGGVLEWLENHTDNRSDGIERLQQFLGSHGAHHDF
                     NQEAKVLRQVLQSDMAMYVIDAREPVLDKYRDELTILSWCAKPVMPVFNFTGGQPPES
                     WTTMLARRNLHVFAGFDTVAFDFEGELRLWENLATMLPERSTLDRLTAMRRREWQRLD
                     GEARREIADFLIDAAAFRQEVDENEDTATVLQTMQAEIRQLERQMQQRLFALYRFYHS
                     EIDGGDWMPQAFRQDPFDSELLKQYGIRTGTGAATGALIGLGLDIATLGGSLGLGTAI
                     GGFLGGILPNTRTISDKLAGRQTLHTDPETLTLLAARALDLLHVLQTRGHAAQSDIEL
                     HSRKAPWDAARLPPELNKARSHWKWSSLNTHRPETSRAERAGYVEKLQIRLSG"
BASE COUNT         1741 a         1983 c         2119 g         2024 t
ORIGIN      
        1 ctctatttgt taaaatcaat aataaataca aggcaatcca aatgaaagaa ctagataaaa
       61 tcgatttccg cattcttaag atccttcaac agaatgcccg catcccgatg acggagcttg
      121 ccgagaaggt aggcttgtcc accacgcccg ttacagagag ggtgcgccgt ttggagcggg
      181 aacattatat ttccggctat cacgcccacc tcaatcccca tctgttgggc aaaccactat
      241 tggtttttgt cgagctgaag ctgcaatcca aatcgggcaa tattttcgaa gatttcaaaa
      301 aagaagtgct gaaaattccg caaattatgg aatgccactt ggtgtcgggc gaatacgact
      361 atctgattaa agtacgtttg cccgatatgt ctgcctatcg ggatatgcta ggcaatatcc
      421 tattgcaact gcctgccgct tcggagagta ggagttatgt tgtgatggag gaggtcaaag
      481 aaaatccggt tttggatttg gattgaatat ttcagaccgg atatgcggtt tgacacctaa
      541 atgaaacata acaacatcac gcacagaggc ttgttgcttc agataaaaaa atgcacacat
      601 tcaatagaat gtgtgccaag tctacaaagg agaaatagag gagaaactat taactgacta
      661 ctcgaaccag ctaacggaac gaattatgca gcttttccgg tcaaaaagca agcgtttttc
      721 ttgttaaatt tcttaaagaa tggaatttca aacaataaaa gtaattaaat ttcaaaaaaa
      781 gcggagataa aaaaatgcac acatccggtt gaatgtgtgc caagtctaca aaggagaaat
      841 agaggagaaa aatcaagctg catcaagcaa ctcgacggcg agaattatcc gccgtttctt
      901 atccgctgtc aattattttt tgaaaattta cccgaccgat tcaaattttg caaaaaactt
      961 gcccgatggc tatccggtaa caaattcctt caaaaacctg tcaatccgct tattcaaaaa
     1021 aatcatataa tttcattgaa ataaactttt gattcgctaa atttgccgaa attcaaatcc
     1081 tccggatgta tttttttgcg ggcattgtgc gggcaaatcg ccgttttgtc ccttgtcagg
     1141 tcttgtgtat atcgggaaaa ccgaaatcgt ccgcacctgc gccggtgtcg attcgtccct
     1201 tgccatctcg ggatatatcc agcaaaatcg gcatatcggt attttgattg gtgtgttgag
     1261 aaaatgaccc cgttatttag aaaagccgtt tggctgctgt ttgccgtttc ggtctgtgca
     1321 tttgccggtt ctttggcggc acagtatgtt ttgggtatgg agccttgcgt tttgtgtatc
     1381 agtcagcggt tatgcgtttt ggcaaccgca ttgtgtacgg caattgtcct gatgtgcaga
     1441 ccaagaagaa gggcgggcgg tttgttcggt gctgtcttta tcagcattcc ggccgttacg
     1501 ggtatttctg ttgcggcata tcagttgtgg ttgcagtcgc tgccgccggg aaccgctcct
     1561 tcgtgcggtg cgccgtggac gttccgcttg aagggctggt ctttgtttga ttggttcgag
     1621 cctgtcgtgc gcgggttcgg aaattgtgcc gaaccggatt atctgttagg ggttgctttg
     1681 cctgtttgga gcgcggcgta ttttctggcg gttgtcctga cggtttggtg ggcgtgggca
     1741 agggctaaat aaatcaatgc cgtctgaaag gttcagacgg cattttattg tatgtctgct
     1801 gtgctgcgta tcagtccaga ttcaatacgg cggaagtgta aacgtcttgc acgtcgtcca
     1861 agtcttccag cgcgtcaatc agtttttgca ttttgacggc atcgtcgccg gagagttcgg
     1921 tttcgttttg ggcgcgcatc gtaacgtcgc cgtcaacgga tttgtaacct gccgcctcca
     1981 aagcggattt tacgcccgcc caatcgtttg gcgcggtaat gacttcgatg gaaccgtcgt
     2041 cgttggtaac cacgtcttcc gcaccggctt ccaaagccgc ttccatcagc gcgtcttcgt
     2101 caacgccggg ttcgaatacc aaatagccct gatgcacgaa gttgaacgcc acgcagccgt
     2161 cggtacccaa gttgccgccg tttttggtaa acgcgtggcg tacgtccgca acggtgcggg
     2221 ttttgttgtc ggtcaggcag tccaccatca aagccgcgcc gccgatgccg tagccttcgt
     2281 agcgcaactc gatgtattcc acgccttcca agttgcccgt acctttatcg atggcgcgtt
     2341 gcacattgtc tttgggcata ttgttttcgg ctgctttttc caaagccagg cgcaggcgcg
     2401 ggttggcacc ggggtcgccg ccgcccatac gcgccgcaac ggtgatttct ttgattaaac
     2461 gggtgaagat tttgccgcgt ttggcatcct gacgggcttt tttatgctgg atattcgccc
     2521 acttgctatg gcctgccata aatttccttt cttatttcaa ataattaatc tgtttttgtc
     2581 agatttttta cggtcggcat tttaacataa gttgcaagta cccaaaatat cctgttttat
     2641 gccgtgccgt tgtctatgct gtctgaaagc gatttcctcc gctttccgct taaaaataaa
     2701 gaaatgtttt aattaacgat attttacggt atgatggcgc agcttctccc cgattgttga
     2761 caatttaagg catctgttgc ggcaaatacg gtctgctcgc cgtgtttcct tattggaatg
     2821 tcttttggaa ggcagtcatt ttaattgtaa gataaggttt attttatgga aaatatattg
     2881 tctgttttgg tgggtacagt caatcggttc ctttgggact acctgctgat ttacgcgctt
     2941 ttgggtatcg gcctgttttt tacgctgtat cttggtgcgc cgcagattac caagctgggc
     3001 gcgggattca aatccgtatt cggcggcttg tttgccaaag gcgataaaga cgacaagtct
     3061 ttatcgcagt ttcaggcgtt ggcggttgcc atatccgcgc aaatcggtac gggcaacgtc
     3121 gccggcgtgg cgaccgccat caccgcaggc gggccgggcg cgattttttg gatgtgggtt
     3181 tctgccgttt tggggatgtc cacgattttt gcggaggcac tgctggcgca gaaataccgc
     3241 gtcgtcagcc acggcaaata catcggcggg ccggcgttct acatcaccca cggtctgact
     3301 ccgaaaatcg gcaggggagc ggcgcgtttt ttgtccggtt tcttttccat tgcgttgatt
     3361 atcgcattgg gctttatcgg taatgcgaca caggcaaact ccattgcttc tgccgttacc
     3421 attgcatttg atgtgccttc tttggcagtc ggtattgtgc ttgccgtcct tgcgggcatg
     3481 gttgtgattg gcggcgtgaa ccgtattgcc aatattgccc aatttgtcgt gccgtttatg
     3541 gcggttgttt atattttgtg cgccgtcgtt atcctgtttg aattttccga ccatattgtg
     3601 ccgatgttca accacatctt taccgccgcc ttcaatcccg aagccgtttt gggcggtgcg
     3661 gcgggtatcg gtatgcgcga agcgatacgt ttcggcgtgg cgcgcggtct gttttccaat
     3721 gaggcgggga tgggttcgac tccgcacgcc cacgcgactg cggatgtgaa gcatcctgtg
     3781 cagcaaggta tggcggcatt tgtcggtgtg tttatcgata cgattttggt atgtacggca
     3841 actgcgctga ttatcctgct gaccgatgcc aacctttcgg gcgaacaggg cgcggcggtt
     3901 actcaatttg cctttaacaa ggcatttccg ggcttcggtt cgcaattgct tgccgtgtgt
     3961 ctgaccttct tcgccttgac gaccattatc ggctggtatt atttcggtga gtccaacatc
     4021 cgttttcttt tcaggggaag acacttgggc atctatcgcg cattggttct gcttgccatc
     4081 gttttaggta cgctcggcaa agtcgatttg gtttggagcc tgtccgatat gttcaacggc
     4141 tttatggtta tcccgaactt gatagccctg tttttgttgc gtaaggaaat ccgtgccatt
     4201 tatgatgatt atttggcaca aaaaaaagcg ggtcgggatt tgtcttatcc gtatgaattc
     4261 cacgagttcc acgacaaggg ctgatgtccg gcaaacagaa aacctcccaa tcttcaggat
     4321 cgggaggttt tgtttttcag acggcattca gattacataa ccgtacacac tgacaaattg
     4381 ggtgatgctg ccgcccaata cgaacagatg ccagattccg tgcccgtgtc ggattttttc
     4441 atcgtttaca aaccagtaaa tgccgacgct gtacagcata ccgcctgccg ccagccaagc
     4501 cagtcctgcc gacgggagtg aggctgtcag ggatttcatt accgccaaga ccatccaacc
     4561 catgacgaca taaatcacaa tagacagcag acgtttttcg cttttccgtc cgatggtgag
     4621 ttcttgtgcg attcctgcag ccgccagcag ccaggacagt gaaaataccg tccagcccgg
     4681 cccgtttctc aaagaaacca gtgcaaacgg tgtgtagctt ccggcaatca gcacataaat
     4741 catgcagtgg tcggtttttt tcaaaatgct tttcagtttt ccggctgcaa ttccgtggta
     4801 cagcgaggaa ctcaaataga gcagaagaag gctgatgccg taaaccgata cgctgaagat
     4861 acggtagccg tccccgtgtc ctatggtttt cagcagcatc agcgccaaac ctgccgccgc
     4921 cagaatcaaa ccgctcaaat ggctgtaagt attgaagcgt tcgcctgtat acatcgcaca
     4981 atctttcggg aaagtagagg cagtcagttt acgccgatac ttttgcctct gtgtgagatt
     5041 tactctttgc ctacactgtg aatattcttg aaaatgcgtg tgttaaaatc tgttttttat
     5101 tttcagacgg cattttatgt tgaatccatc ccgaaaactg gttgagctga tccgtatttt
     5161 ggacgaaggc ggttttattt tcagcggcga tcccatgcag gcgacggagg ctttgcgccg
     5221 cgtggacggc agtacggagg aaaaaatcat ccgtcgggcg gagatgatcg acaggaaccg
     5281 tatgctgcgg gacacattgg aacgtgtgcg tgcggggtcg ttctggttgt gggtggcggc
     5341 ggcgacgttt gcgtttttta ccggtttttc aggtacttat cttctaatgg gcaatcaggg
     5401 tctgaatttc tttttggttt tggcgggcgt gttgggcatg aatacgctga tgctggcggt
     5461 ttggctggcg acggtgttct tgcgcgtcag ggtcgggcat tttttcagca gcccggcgac
     5521 gtggtttcgg ggcaaagacc ctgtaaatca ggcggtgttg cggctgtatg cggacgagtg
     5581 gcggcaacct tcggtacgtt ggaaaatagg cgcaacgtcg cacagcctgt ggctctgcac
     5641 gctgctcgga atgctggtgt cggtattgtt gctgcttttg gtgcgccaat atacgttcaa
     5701 ctgggaaagc acgctgttga gcaatgccgc ttcggtacgc gcggtggaaa tgttggcatg
     5761 gctgccgtcg aaactcggtt tccctgtccc cgatgcgcgg gcggtagttg aaggtcgtct
     5821 gaacggcaat attgccgatg cgcaggcttg gtcggggctg ctggtcggca gtatcgcctg
     5881 ctacggcatc ctgccgcgct tcttggcttg ggtggtgtgt aaaatccttt tgaaaacaag
     5941 caaaaacggc ttggatttgg aaaaacccta ttatcaggcg gtcatccgcc gctggcagaa
     6001 caaaattacc gatgcggata cgcgtcggga aaccgtgtcc gccgtttcgc cgaaaatcgt
     6061 cttgaacgat gcgccgaaat gggcggtcat gctggagacc gagtggcagg acggcgaatg
     6121 gttcgagggc aggctggcgc aggaatggct ggataagggc gttgccacca atcgggaaca
     6181 ggttgccgcg ctggagacag agctgaagca gaaaccggcg caactgctta tcggcgtgcg
     6241 cgcccaaact gtgcccgacc gcggcgtgtt gcggcagatc gtccgacttt cggaagcggc
     6301 gcagggcggc gcggtggtgc agcttttggc ggaacagggg ctttcagacg acctttcgga
     6361 aaagctggaa cattggcgta acgcgctggc cgaatgcggc gcggcgtggc ttgagcctga
     6421 cagggcggcg caggaagggc gtttgaaaga ccaataaact cacttgaaat gttctgttaa
     6481 gccgccattc tgaaaaaaga ccgtctgaaa atccattctt caaaaacatc atgaacaaac
     6541 aacccctttc cctcgccgtc gtcgggcata ccaacaccgg caaaacctcg ctcctgcgta
     6601 cccttttgcg cgacagcggt ttcggcgaag tcaaaaacgc cccatcgacc acgcgtcatg
     6661 tcgaagaagc cgccatcagc gacggcgcag acacgctggt tttcctgtac gacacgcccg
     6721 gactcgaaga cgcgggcggc gtgctggaat ggctggaaaa ccatacggac aatcgttcag
     6781 acggcatcga acggctgcaa cagtttctcg gcagccacgg cgcgcaccat gatttcaatc
     6841 aggaagccaa agtcttacgg caagtcttgc aaagcgatat ggcaatgtac gtcatcgacg
     6901 cgcgcgaacc cgtcctcgac aaatacaggg acgagttgac catcctttca tggtgtgcca
     6961 aaccggttat gcccgtgttc aactttaccg gcggacagcc tcccgaatcg tggacaacca
     7021 tgctggcgag gagaaacctg cacgttttcg cagggttcga caccgtcgcc tttgattttg
     7081 aaggcgaact acgcctgtgg gaaaacctcg ccaccatgtt gcccgaacgc agcacacttg
     7141 accgcctgac agccatgcgc cggcgcgaat ggcagcggct ggacggcgaa gcgcgccgcg
     7201 aaatcgccga ctttttaatt gatgccgccg ccttcaggca ggaagtggac gaaaacgagg
     7261 ataccgccac cgtgctgcaa accatgcagg cggaaatacg ccaactcgaa cggcagatgc
     7321 agcagcggct gtttgccctc taccgtttct accacagcga aatcgacggc ggcgactgga
     7381 tgccgcaagc cttccgccaa gacccgttcg acagcgaatt gctcaaacaa tacggcatcc
     7441 gcaccggcac gggcgcggca accggcgcgc tcatcggctt ggggctggac atcgccacac
     7501 tcggcggctc gctcggattg ggtacggcaa tcggcggctt tttgggcggc atcctgccca
     7561 atacccgcac catttccgac aaactcgctg gccgccaaac cctgcacacc gaccctgaaa
     7621 ccctgaccct gctcgccgcc cgcgccctcg atttgctcca cgtcctgcaa acgcgcggac
     7681 acgcggcaca gtcggatatc gagctgcaca gccgcaaagc cccgtgggac gccgccagac
     7741 tcccgcccga actcaacaaa gcccgcagtc attggaaatg gtcgtcgctc aatacgcacc
     7801 gccccgaaac cagccgcgcc gaacgcgccg gatatgtgga gaaacttcaa atccgcctgt
     7861 cgggaaa
//
LOCUS       DAXHNP010000098         7575 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.098, whole genome shotgun sequence.
ACCESSION   DAXHNP010000098 DAXHNP010000000
VERSION     DAXHNP010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7575
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.098"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..419
                     /locus_tag="ACFM5C_001463"
     CDS             <1..419
                     /locus_tag="ACFM5C_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HFC6069144.1"
                     /translation="EAEWAGSLFGLHKSFGFLTLTVITLRIVWAVANRAKRPQSDSKA
                     AAAGHGILYLLMLAVPVIGMIRQYGSGRGPLKVFGVEVMQGSPEKIEWMANLGNTFHG
                     NLGWLLFAAVAGHVAMVVTHRVQGRDVLCRMTGRVR"
     gene            complement(444..1319)
                     /gene="rsmI"
                     /locus_tag="ACFM5C_001464"
     CDS             complement(444..1319)
                     /gene="rsmI"
                     /locus_tag="ACFM5C_001464"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFC6069145.1"
                     /translation="MFQKHLQKASDSVVGGTLYVVATPIGNLADITLRALAVLQKADI
                     ICAEDTRVTAQLLSAYGIQGKLVSVREHNERQMADKIVGYLSDGMVVAQVSDAGTPAV
                     CDPGAKLARRVREVGFKVVPVVGASAVMAALSVAGVAGSDFYFNGFVPPKSGERRKLF
                     AKWVRAAFPIVMFETPHRIGATLADMAELFPERRLMLAREITKTFETFLSGTVGEIQT
                     ALAADGNQSRGEMVLILYPAQDEKHEGLSESAQNVMKILAAELPTKQAAELAAKITGE
                     GKKALYDLAVSWKNK"
     gene            1373..1720
                     /locus_tag="ACFM5C_001465"
     CDS             1373..1720
                     /locus_tag="ACFM5C_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFC6069146.1"
                     /translation="MRLNHKQGEAGEDAALAFLQSQGCTLLARNWHCAYGEIDLIVKN
                     GGMILFVEVKYRKNRQFGGAAYSISPSKLLKLQRSVEYYLQQNRLTNVPCRLDAVLIE
                     GSRPPEWIQNITG"
     gene            1725..2318
                     /locus_tag="ACFM5C_001466"
     CDS             1725..2318
                     /locus_tag="ACFM5C_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HFC6069147.1"
                     /translation="MTTLQERVAAHFAESIRAKQEAGKVLVEPTVQAAELMLQCLMND
                     GKILACGNGGSAADAQHFAAEMTGRFEKERMELAAVALTTDTSALTAIGNDYGFNHVF
                     SKQVRALGRAGDILVGISTSGNSANVIEAIKAAHERDMHVIALTGRDGGKIAAILKDT
                     DVLLNVPHPRTARIQENHILLIHAICDCIDSVLLEGM"
     gene            2382..2990
                     /locus_tag="ACFM5C_001467"
     CDS             2382..2990
                     /locus_tag="ACFM5C_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HFC6069148.1"
                     /translation="MKPKPHTVRTLIAAIFSLALSGCVSAVIGSAAVGAKSAVDRRTT
                     GAQTDDNVMALRIETTARSYLRQNNQTKGYTPQISVVGYNRHLLLLGQVATEGEKQFV
                     GQIARSEQAAEGVYNYITVASLPRTAGDIAGDTWNTSKVRATLLGISPATQARVKIVT
                     YGNVTYVMGILTPEEQAQITQKVSTTVGVQKVITLYQNYVQR"
     gene            2998..3648
                     /locus_tag="ACFM5C_001468"
     CDS             2998..3648
                     /locus_tag="ACFM5C_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069149.1"
                     /translation="MPSEPPSDGIARHPKSTIKMAKKPNKPFRLTPKLLIRVVLLICI
                     TAIGALAIGIVSTFNPNGGKTLQTEPQHTDSPRETEFWLPNGVVGQDAAQPEHHHAAS
                     SEPAQPDGTDESGSGLPSPAAPKKNRVKPQPADTAQTDRQPDDAGTQAENTLKETPVL
                     PTNVPRPEPRKETPEKQAQPKETPKEKETPKENHTKPDTPKNTPPKPHKEILDNLF"
     gene            3688..4467
                     /gene="map"
                     /locus_tag="ACFM5C_001469"
     CDS             3688..4467
                     /gene="map"
                     /locus_tag="ACFM5C_001469"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6069150.1"
                     /translation="MNGIIIKTPEEIEKMRELGKLVAEALDYIGQFVKPGVTTDEIDK
                     LVYDYHVNVQGGYPAPLHYGNPPYPKSCCTSVNHVICHGIPDDKPLKEGDIINIDLTI
                     KKDGFHGDSSRMFTVGKVSPIAQRLIDVTHASMMAGIEAVKPGATLGDVGYACQQVAE
                     NAGYSVVQEFCGHGIGRGFHEAPQVLHYGKKGQGPVLKPGMIFTVEPMINQGKRHLRI
                     LNDGWTVVTKDRSLSAQWEHEVLVTETGYEILTVSPASGKP"
     gene            4622..4921
                     /locus_tag="ACFM5C_001470"
     CDS             4622..4921
                     /locus_tag="ACFM5C_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6069151.1"
                     /translation="MKIFENIEDVKAIRKKTGLNQIDFWGKVGVTQSGGSRYETGRKM
                     PKPVRELLRLVHIECIDLAKVNKKDMEIAALLKKHHPDLYAELSKQTKSERKKQS"
     gene            5159..5533
                     /locus_tag="ACFM5C_001471"
     CDS             5159..5533
                     /locus_tag="ACFM5C_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6069152.1"
                     /translation="MKLLTTAILSSAIALSSMAAAAGTNNPTVAKKTVSYVCQQGKKV
                     KVTYGFNKQGLTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVMDGKSY
                     RKQPIMITAPDNQIVFKDCSPR"
     gene            complement(5720..7186)
                     /locus_tag="ACFM5C_001472"
     CDS             complement(5720..7186)
                     /locus_tag="ACFM5C_001472"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate:quinone oxidoreductase"
                     /protein_id="HFC6069153.1"
                     /translation="MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALE
                     SSNAWNNAGTGHSALCELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLE
                     DNSFINAVPHMSLVMNEDHCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG
                     RDENQPVAANYSAEGTDVDFGRLTRQMVKYLQGKGVKTEFNRHVEDIKRESDGAWVLK
                     TADTRNPDGQLTLRTRFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFFRNSNPET
                     AEQHNAKVYGQASVGAPPMSVPHLDTRNVDGKRHLMFGPYAGFRSNFLKQGSLMDLPL
                     SIHMDNLYPMLCAGWANMPLTKYLLGELRKTKEERFASLLEYYPEANPDDWELITAGQ
                     RVQIIKKDSEKGGVLQFGTEIVAHADGSLAALLGASPGASTAVPLMIRLMHQCFPERA
                     PSWEDRLKELVPGYGIKLNENPERADEIIAYTAKVLDI"
BASE COUNT         1966 a         2289 c         1845 g         1475 t
ORIGIN      
        1 aagaggcgga atgggcgggc agcctgttcg gcctgcacaa atctttcggc ttcctcacgc
       61 tgacggtgat tacattgcgc atcgtgtggg cagttgccaa ccgcgccaag cgtccgcaaa
      121 gcgacagcaa ggctgcggcg gcaggacacg gcattctgta tctgctcatg cttgctgttc
      181 ccgttatcgg catgatccgc caatacggca gcggccgcgg cccgttgaaa gtgttcggcg
      241 ttgaagtgat gcagggttcg ccggaaaaaa tcgagtggat ggcaaacttg ggcaacacgt
      301 tccacggcaa tttgggctgg ctgctgtttg ccgccgtcgc cggacacgtc gccatggtcg
      361 tcacccaccg tgttcagggt agagatgttc tgtgccgcat gacggggcgt gtccgctgat
      421 tccgttcgca ctatggtgcc gcactatttg tttttccacg acactgccaa atcgtacaaa
      481 gcctttttgc cctcacctgt aatcttggcg gcaagctcgg cagcctgttt ggtcggcagt
      541 tcggcagcaa ggattttcat cacattttgc gcggactcgg acaagccttc gtgtttttca
      601 tcctgcgccg gatacagtat caacaccatc tcgccgcgcg attggttgcc gtcggcagcc
      661 aatgccgtct gaatttcccc aaccgtgccg cttaagaacg tttcaaacgt tttcgtgatt
      721 tcgcgcgcca gcatcagacg gcgttcgggg aacagttccg ccatatcggc aagcgtcgcc
      781 ccgatgcggt gcggcgtttc aaacataacg ataggaaacg ccgcccgcac ccatttggca
      841 aacaatttcc tacgttcgcc cgatttcggc ggtacaaaac cgttgaaata aaaatcggat
      901 cccgccacac cagccacact caaagccgcc atcaccgcgc ttgcgccgac aacagggaca
      961 actttaaacc cgacctcacg cacgcggcgg gcgagtttcg cgcccgggtc gcacacggcc
     1021 ggcgtacccg catcggaaac ctgtgccaca accatgccgt ctgaaagata gccgacaatc
     1081 ttgtccgcca tctgccgttc gttgtgttcg cgcacgctga cgagtttgcc ctgaatgccg
     1141 tacgcgctca aaagctgcgc ggtaacgcgc gtgtcttcgg cacagatgat gtccgccttt
     1201 tgcaataccg ccaaagcgcg cagggtaatg tccgccaaat tgccgatggg cgtggcaacc
     1261 acgtataatg tccctccgac gacgctgtcg gaggctttct gcaagtgttt ctgaaacata
     1321 aaaaatgccg tctgaaaaac aaacattata aattataaag gttaaaccga ttatgcgcct
     1381 aaaccacaaa cagggcgagg caggggaaga tgccgcgctt gccttcctcc aatcccaagg
     1441 ctgcacactg cttgcccgca actggcactg cgcctacggc gaaatcgacc tgattgtcaa
     1501 aaacggcggc atgattctgt ttgttgaagt aaaataccgc aaaaatcggc aattcggcgg
     1561 tgccgcatac agcatttccc catccaaatt attgaaactg caacgaagtg tagagtatta
     1621 tctgcaacag aacaggttga caaacgtacc gtgccgcctc gacgcggtac tcatcgaagg
     1681 cagccgcccg cccgagtgga tacagaatat tacaggttga cgatatgacg acattacaag
     1741 aacgcgttgc cgcccatttt gccgaaagca tccgtgccaa gcaggaagcc ggaaaagtat
     1801 tggtcgagcc gaccgtacag gctgccgagc tgatgctgca atgcctgatg aacgacggca
     1861 agattctggc gtgcggcaac ggcggttcgg ctgccgacgc gcagcacttc gccgccgaaa
     1921 tgaccggacg ctttgaaaaa gagcgcatgg aactcgccgc cgtcgccctg accaccgaca
     1981 catccgcgct gaccgccatc ggtaacgact acggcttcaa ccacgtcttc agcaaacagg
     2041 tacgcgccct cggacgcgcc ggcgacatcc tcgtcggcat ttccacttcc ggcaattccg
     2101 ccaacgtcat cgaagccatt aaagcggcac acgaacgcga tatgcacgtc atcgccctga
     2161 ccggccgcga cggcggcaaa atcgccgcca tactcaaaga caccgacgtt ctgctcaacg
     2221 tcccccatcc gcgcaccgcc cgcattcagg aaaaccacat cctgctgata cacgccatat
     2281 gcgactgtat cgactccgta ctgctggaag gaatgtaacc cttttcagac ggcatggcgc
     2341 aaagcaatgc cgtctgaaac gcccaagaaa ggaagccccc gatgaaaccc aaaccgcaca
     2401 ccgtccgcac cctgattgcc gccattttca gccttgccct tagcggctgc gtcagcgcag
     2461 taatcggaag cgccgccgtc ggcgcgaaat ccgccgtcga ccgccgaacc accggcgcgc
     2521 aaaccgacga caacgttatg gcgttgcgta tcgaaaccac cgcccgctcc tatctgcgcc
     2581 aaaacaacca aaccaaaggc tacacgcccc aaatctccgt tgtcggctac aaccgccacc
     2641 tgctgctgct cggacaagtc gccaccgaag gcgagaaaca gttcgtcggt cagattgcac
     2701 gttccgaaca ggccgccgaa ggcgtataca actacattac cgtcgcctcc ctgccgcgca
     2761 ctgccggcga catcgccggc gacacttgga acacatccaa agtccgcgcc acgctgttgg
     2821 gcatcagccc cgccacacag gcgcgcgtca aaatcgttac ctacggcaac gtaacctacg
     2881 ttatgggcat cctcaccccc gaagaacagg cgcagattac ccaaaaagtc agcaccaccg
     2941 tcggcgtaca aaaagtcatc accctctacc aaaactacgt ccaacgctga ctcggcaatg
     3001 ccgtctgaac cgccttcaga cggcattgcc cgacacccca aaagcacaat caaaatggca
     3061 aaaaaaccga acaaaccctt caggctgacc cccaaactcc tgatacgcgt cgtattgctc
     3121 atctgtatca ccgccatcgg cgcattggca ataggcatcg tcagcacatt caacccgaac
     3181 ggcggcaaaa ccctccaaac cgaaccgcaa cacaccgaca gcccccgcga aaccgaattc
     3241 tggctgccaa acggcgtagt cggacaagat gccgcccaac ccgaacacca ccacgccgcc
     3301 tcatccgaac ccgcacagcc ggacggcaca gacgaaagcg gcagcggact gccgtcccct
     3361 gccgcaccca agaaaaaccg ggtcaaaccg caacctgccg acacagctca aaccgacagg
     3421 cagccggacg acgccggaac acaagctgaa aacacactca aagaaacccc cgtactgccc
     3481 acaaacgtcc cccgtcccga accccgaaaa gaaacacccg aaaaacaggc gcagcccaaa
     3541 gaaacaccca aagaaaaaga aacgcccaaa gaaaaccata ccaaaccgga caccccgaaa
     3601 aacacgccgc ccaaacccca taaagaaatt ctcgacaacc tcttctgacc cggcacggca
     3661 ggcacacccg caatccaagg aagcattatg aacggcatca tcatcaaaac ccccgaagaa
     3721 atcgaaaaaa tgcgcgagct gggcaaactc gtcgccgaag ccctcgacta catcggacaa
     3781 ttcgtcaaac ccggcgtaac caccgacgaa atcgacaaac tcgtttacga ctaccacgtc
     3841 aacgtccaag gcggctatcc cgcccccctg cactacggca acccgcccta ccccaaatcc
     3901 tgctgcacct ccgtcaacca cgtcatctgc cacggcattc ccgacgacaa gccgctcaaa
     3961 gaaggcgaca ttatcaacat cgacctcacc atcaaaaaag acggcttcca cggcgactcc
     4021 agccgtatgt ttaccgtcgg caaagtctcc cccatcgccc aacggctgat cgacgtaacc
     4081 cacgcctcca tgatggcggg catagaagcc gtcaaacccg gcgcgacact gggcgacgta
     4141 ggctacgcct gccaacaggt tgccgaaaac gccggctatt ccgtcgtaca ggaattctgc
     4201 ggacacggca tcgggcgcgg tttccacgaa gccccgcaag tgttgcacta cggaaaaaaa
     4261 gggcagggcc ccgttctaaa accgggtatg atttttaccg tcgaaccgat gatcaaccaa
     4321 ggcaaacgcc acctgcgtat cctcaacgac ggctggacgg tggttaccaa agaccgctcc
     4381 ctctccgccc aatgggaaca cgaagtcttg gtgaccgaaa ccggctacga aatcctcacc
     4441 gtcagccccg cctccggcaa accctgaagc cggacgtatc cgccccataa aaacaaacaa
     4501 tgccgtctga aagaaacggc agatatgata tataatataa aaacaggctt gacccggcac
     4561 attacgaaaa caaagcaaat cggaatttgc cccgcaacca gacaaactta aaggaagttt
     4621 tatgaaaata tttgaaaata tagaagatgt taaagccatc cgtaaaaaga ccgggctgaa
     4681 ccagatagac ttctggggca aggtcggcgt tacccagtct ggaggctcgc gctacgaaac
     4741 cggccgcaaa atgcccaaac ccgtacgcga actgctccgc ctcgtccata tcgaatgcat
     4801 cgatttggcg aaagtcaaca aaaaagatat ggaaatcgcc gccctgttga aaaaacacca
     4861 tcccgacctg tatgccgaat tgtccaaaca gaccaagtcc gaaagaaaaa aacaaagtta
     4921 aaccgcaacc tccggatgcc cgaaagtttt tcatttccga aaaacgcaaa caatgccgtc
     4981 tgaaacaccg gacaggtcgc cgtatcccgc ctgccgcccc tgcctcaaac cgccgaaccg
     5041 cccgaacccg cctttttaca aactttatcc aatttcctgt ttatttcagg atacgccgac
     5101 attagaatgt caaacagctc gaaacgggca aactccacat ccatccaaag gaataaaaat
     5161 gaaacttctg accaccgcaa tcctgtcttc cgcaatcgcg ctcagcagta tggctgctgc
     5221 tgccggcacg aacaacccca ccgttgccaa aaaaaccgtc agctacgtct gccagcaagg
     5281 taaaaaagtc aaagtaacct acggcttcaa caaacagggc ctgaccacat acgcttccgc
     5341 cgtcatcaac ggcaaacgcg tgcaaatgcc tgtcaatttg gacaaatccg acaatgtgga
     5401 aacattctac ggcaaagaag gcggttatgt tttgggtacc ggcgtgatgg atggtaaatc
     5461 ctaccgcaaa cagcccatta tgattaccgc acctgacaac caaatcgtct tcaaagactg
     5521 ttccccacgt taatcaggca acaaaaaaca gcgttttcag aaatgaaaac gctgtttttt
     5581 gactgttcca ttattcacaa aagggaaaaa acgattacct gccccgtgta ccaaaacctg
     5641 ccctgccgga tgaagggcat aactggcagg gacggcgtca acaccatatg ggggtacggc
     5701 ttttcttgaa agattcggct taaatatcca atactttcgc ggtataggcg ataatttcat
     5761 ccgccctttc agggttttcg ttcaacttga tgccgtaacc cggtaccagc tctttcagac
     5821 ggtcttccca agacggggcg cgctcgggga agcattggtg catcagccgg atcatcagcg
     5881 gcacagcggt cgatgcgccc ggcgacgcgc ccagcaatgc ggcgagtgag ccgtcggcgt
     5941 gggcgacaat ctccgtacca aactggagca cgccgccttt ttcggagtct tttttaatga
     6001 tttggacgcg ttgccctgcg gtgatgagtt cccagtcgtc ggggtttgcc tcggggtagt
     6061 attccagcag ggaggcgaag cgttcttctt tggttttacg caattcgccc agcaggtatt
     6121 tggtcagcgg catattcgcc cagccggcgc acagcatagg atagaggttg tccatatgga
     6181 tggacagcgg caaatccata agcgagcctt gcttgaggaa gttggaacgg aagcctgcgt
     6241 aagggccgaa cataaggtgg cgtttgccgt ccacgttgcg tgtgtcgagg tgcgggacgg
     6301 acatcggcgg cgcgccgacg gaagcctgcc cgtacacttt ggcgttgtgt tgttcggcgg
     6361 tttcggggtt gctgttgcgg aagaacaggc cggacacggg gaagccgccg tagcctttgc
     6421 cttcggggat gccggatttt tgcagcaggg tcagcgcgcc gccgcccgcg ccgaggaaga
     6481 ggaagcgggt acggagggtg agctgcccgt cggggttgcg ggtatcggcg gttttgagca
     6541 cccacgcgcc gtcggattcg cgtttgatgt cttcgacgtg gcggttgaac tcggttttta
     6601 cgcccttgcc ctgcaaatat ttcaccattt ggcgcgtcag ccgtccgaaa tcgacatccg
     6661 taccttcggc ggagtagttg gcggcgacgg gttggttttc gtcccggccg cgcatcatca
     6721 gcggagccca atcggaaatt ttgttccgat cggtggaaaa ttccatattt tcaaaaagtt
     6781 tttgggtttt aaacgcgtca taacgttttt gaagataaga acaatggtct tcattcatca
     6841 ccaaagacat atgcggcacg gcattgatga aggaattgtc ttccaacttg ccttccgcga
     6901 ccagcgtcgc ccaaaactgg cggctgacat gaaactgttc ggcaatattg agggcgcgcg
     6961 ccggatcgat aatcccattt gcacccaacg gcgcatagtt caattcgcac agcgcggaat
     7021 gccccgtgcc ggcgttgttc cacgcgtttg acgattccaa cgccacatct tccaagcgtt
     7081 caatcagggt gatttcccaa gacggttcga gttctttgag caaaacgccc aaagtcgcgc
     7141 tcataatgcc gccgcccacc aagacaacgt ctgtcgcttc agccatggtt tactcctaaa
     7201 aaacaggcat cttctgccct tatggttatt tgccgtacta caaacgcctg aatcgcaaaa
     7261 gcagggaaaa ccgacaatgg tgtgtgtccg agtatgctgt ttcggggttg gaatgcgttg
     7321 caagtatggc ttccgacacc gcttcagggg cttgtaatat gttatcgtga atgtagtgga
     7381 ttttactggg aaatgcaaag tttttctgtc gcccgccaag tcgggaaact gcgaaatgaa
     7441 aaataaaaat agttatttat ctatatatat caaattttta atagataaaa aatcaaaatt
     7501 gtttatatat taatttttaa aagattgtca gcatattgcg ttaagttttt tatagtggat
     7561 taacaaaaat cagga
//
LOCUS       DAXHNP010000099         7568 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.099, whole genome shotgun sequence.
ACCESSION   DAXHNP010000099 DAXHNP010000000
VERSION     DAXHNP010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7568
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.099"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(219..2255)
                     /locus_tag="ACFM5C_001473"
     CDS             complement(219..2255)
                     /locus_tag="ACFM5C_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HFC6069154.1"
                     /translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
                     THTGWANTVEPLTGITERVGRIWGVVSHLNSVTDTPELRAVYNELMPEITVFFTEIGQ
                     DIELYNRFKTIKNSPEFDTLSPAQKTKLNHDLRDFVLSGAELPPEQQAELAKLQTEGA
                     QLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSEGKTGYKIGLQIPH
                     YLAVIQYADNRELREQIYRAYVTRASELSDDGKFDNTANIDRTLANALQTAKLLGFKN
                     YAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLNLADLQPWDLG
                     YASEKLREAKYAFSETEVKKYFPVGKVLNGLFAQIKKLYGIGFTEKTVPVWHKDVRYF
                     ELQQNGETIGGVYMDLYAREGKRGGAWMNDYKGRRRFADGTLQLPTAYLVCNFAPPVG
                     DKEARLSHDEILILFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWE
                     YDVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDEGR
                     LKNWQQVLDSVRKKVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAA
                     FEESDDVAATGKRFWQEILAVGGSRGAAESFKAFRGREPSIDALLRHSGFDNAA"
     gene            complement(2343..3215)
                     /locus_tag="ACFM5C_001474"
     CDS             complement(2343..3215)
                     /locus_tag="ACFM5C_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFC6069155.1"
                     /translation="MEIWNMLDTWLGAVPIRAEAVESVAVVAALLLARALLLNIHFKR
                     HPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELI
                     MCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVS
                     FPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQ
                     RHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRV
                     QYRLLNYPAGSETL"
     gene            3485..5875
                     /gene="gyrB"
                     /locus_tag="ACFM5C_001475"
     CDS             3485..5875
                     /gene="gyrB"
                     /locus_tag="ACFM5C_001475"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFC6069156.1"
                     /translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
                     FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
                     HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKV
                     VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
                     FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
                     PQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
                     FSSQTKDKLVSSEIGPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAR
                     EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
                     GKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
                     IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
                     AKIVSDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENA
                     DKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
                     TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
                     QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
     gene            5974..7359
                     /locus_tag="ACFM5C_001476"
     CDS             5974..7359
                     /locus_tag="ACFM5C_001476"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HFC6069157.1"
                     /translation="MVSIFDIFKIGIGPSSSHTVGPMKAAAAFAAGLDAQAVRIVIDI
                     YGSLALTGYGHGTFDALMLGLEGSLPHDIPLVGIPERLERIRTQHILRLNGQEIRFIP
                     DRDLNILGNQVLPKHPNGLRFTAYASDGIVLKEQVYYSVGGGFVVTEEDFDRQAETEK
                     AVPYPYTSCAELLARCRLNRLDISEVVLANEAALAGCGEAEIRRRAAAVAEVMEGCIK
                     RGLGADGELPGGLNVRRRAPQLAAKLKVLRETEIVNTQLWPMVYAMAVNEENAAGGRV
                     VTAPTNGAAGIIPAVLHYFRKFNPHATQERVENFLLTAGAIGILYKTNASISGADVGC
                     QGEVGVACSMAAGAYAEVIGGTPKQVENAAEMAMEHHLGLTCDPVGGLVQIPCIERNG
                     IAAEKALKLGTLALLEDGTDKKVSLDEVIRTMLQTGRDMKATYKETSLAGLAATLRKK
                     AVPVSVRVVEC"
BASE COUNT         1708 a         2124 c         2144 g         1592 t
ORIGIN      
        1 cgtctgaagc gttgtttgac cgtttcagac ggcattttta tcaaattcaa aaatattccg
       61 tcattcccgc gaaagcggga atctagaacg taaaatctaa agaaaccgtt ttatccgata
      121 agtttccgca ccgacagacc tggattcccg cctgcgcggg aatgacggtg cggatgtttt
      181 tctatcgaat cctcctattt tttacttcac ccttgccgtc aggccgcgtt gtcgaagccg
      241 ctgtggcgca agagtgcgtc tatgctcggt tcgcggccgc ggaaggcttt gaaggattcc
      301 gctgcgccgc gcgatccgcc gacggcgagg atttcctgcc aaaagcgttt gcctgtggcg
      361 gcgacatcgt cgctttcttc aaaggcggcg tatgcgtccg cactcaatac ttccgcccac
      421 gcgtagctgt aatagcctgc ggaatagccg cctgcgaaga tgtggccgaa gctcaaggcg
      481 aagcggttgt attcgggcgg ttggatgacg gcgacttttt tgcgcacgct gtctaaaacc
      541 tgttgccagt ttttcagacg gccttcgtcg tcttcgctgt aaatcatcat atcgaagagg
      601 gcaaactcca tttggcggac gaggaacata ccgcgttgga agtttttggc ggcgagcatt
      661 ttgtcgaaga gttctttcgg caggggaacg ccggtttctt cgtgggctga catttgtgcc
      721 aagacgtcgt attcccagac gaaattttcc ataaactggc tgggcagttc gaccgcgtcc
      781 cattctacgc cgttgatgcc ggatacgccc agttcgtcca cttgggtaag caggtggtgc
      841 agcccgtgtc cggtttcgtg gaagaggatg aggatttcgt cgtggctcaa gcgggcttct
      901 ttgtcgccga cgggcggggc gaagttgcag acgaggtagg cggtgggcag ttgcagcgtg
      961 ccgtcggcga agcggcggcg gcctttgtag tcgttcatcc acgcgccgcc gcgtttgcct
     1021 tcgcgtgcgt acaaatccat ataaacgccg cctatggttt cgccgttttg ttgcaattca
     1081 aaatagcgca cgtctttgtg ccagacgggg acggtttttt cggtaaatcc gatgccgtag
     1141 agttttttga tttgggcgaa cagtccgttt aatactttgc cgacggggaa gtattttttg
     1201 acttcggttt cgctgaacgc gtatttggct tcgcgcagtt tttcgctggc gtagcccaag
     1261 tcccacggtt gcaaatcggc gaggttcagg ctttcgcggg cgaaggcttt gacttcggcg
     1321 aggtcttttt cggcgtaggg tttggcgcgg cgggcgaggt cgtgcaggaa gtttaaaact
     1381 tgttcgggcg tgtccgccat tttggttgcc agcgacaatt cggcgtagtt tttgaagccg
     1441 agcagtttgg cggtttgcag ggcgtttgcg agcgtgcggt cgatgttggc ggtgttgtcg
     1501 aatttgccgt cgtctgaaag ttcgctggcg cgggtaacgt aggcgcggta gatttgttcg
     1561 cgcagttcgc ggttgtcggc gtattggatg acggcgaggt agtgcggaat ctgcaaaccg
     1621 attttgtagc ctgttttgcc ttcgctttgc gcggcggcgg caaacatggc gagcgcgtct
     1681 tcgggaatgc cggcaagcgg tgcggcatcg tcaaagtaaa tgccgaacgc gtcggtcgcg
     1741 tctaggacgt tttgggagaa tttggcggaa agttgcgcgc cttcggtttg cagttttgcc
     1801 agttctgcct gctgttcggg cggcagttcc gcgccgctga ggacgaaatc gcgcagatcg
     1861 tggttgagtt tggttttttg cgcgggggag agggtgtcga actcggggga gtttttgatg
     1921 gttttgaagc ggttgtacag ctcgatgtct tgtccgattt cggtgaagaa gacggtgatt
     1981 tcgggcatca gttcgttata gacggcgcgc agttcgggcg tatcggtgac ggagttgagg
     2041 tgcgacacca cgccccaaat cctgccgacg cgttcggtga tgccggtcag gggttcgaca
     2101 gtgtttgccc agccggtgtg cgtttgggct ttgatggcgg cgatttgttc gcgcgcttcg
     2161 gcgatggcgg tttgcagggc gggtttgatg tcttcggttt tgatttgatc aaaacggggt
     2221 tcttcgccca aatggagcag tgcgttgtca gtcataagat gggtttcctt tgcgtgttgt
     2281 gcttcagaca gcatatcggc aatatgccgt ctgaagccgg aaatggggtc ggtcggggaa
     2341 agttaaagtg tttcggagcc ggcggggtaa tttaacaggc ggtattgtac gcgcaaaaat
     2401 tcgtccataa ccgcctgttg gatttccagc cgctttgaaa cgggggaggc gaagcggacg
     2461 atgatgcggt atgccttgtc atcgtacggc acgcgggtaa cgcgcggtct ggcggcgggc
     2521 gtgataaaca gtttttccgc ctgcacgttt tccaaatgcc gttggatggc ggggatgtag
     2581 ggcgcgcaca agggctcgag tacggctttc agacggcata cggcttcatc cgaatccaaa
     2641 tggatgggga cggggatttc gaccgtatgg atgacatagt cgcccaaaat attgtcgcgg
     2701 cgcacggggt ggctcaacaa caggctgttg gggaaagaaa cggtggttcc cgcaagctgt
     2761 ccgaccaagg ggttcggacc gacctgcatc atcagcgtgt tcaacaggtt gatgtcgacc
     2821 acgcgcccgc gcaggccgtt gatttcgata tagtcgccga ccgagtattg ctgggtggca
     2881 gaccttaaaa tactgcccga cagacacata atcagttcct tcgtcgccac gacgaccgcc
     2941 gccgccaccg caaacatcga caaagccagc gtttggattt gcgccgacca gataaatgcc
     3001 agcgaaaaca gcaccaaaag cagcgttata ttgcggctgg caaccaaaaa ccgccgcttg
     3061 ctttcgatgc cgaaatccgg atgccgtttg aagtggatat tcaacagaag ggcgcgcgcc
     3121 agcagcaaag ccgcgaccac cgccacggat tcgaccgcct ccgcacgtat cgggacggca
     3181 ccgagccaag tgtccaacat attccatatt tccatttccg cgcccctgtc cgaaaagtat
     3241 agggtgtaga ttttagtggc aaaaaaacgc ttttgccact ttacgggaca atccccgacc
     3301 tgatgccgga ggcaaacgta ccgtttcatc ttttcccggc ggcacactga tgcggataac
     3361 gctgaattag gcggcaaaat cggctataat acacaattat atatgtcgtc ccgcccgctt
     3421 tttccacaag gtgcggactt gttttggcgg catcgcaaaa tcttttcaaa atccggcaaa
     3481 aaatatgact gaacaaaaac acgaagaata cggcgccgac agcattcagg tgctcgaagg
     3541 cttggaagcg gtacgcaaac gccccggtat gtacatcggc gacacgcagg acggcagcgg
     3601 cctgcaccac atggtgttcg aagtattgga caacgccatt gacgaagcac tcgccggaca
     3661 ttgcgacaaa atcaccgtta ccatccacgc cgaccattcc gtcagcgtcg ccgacaatgg
     3721 gcgcggtatg cccaccggca tccacccgaa agaaggacgc tccgccgccg aagtcatcat
     3781 gaccgtcttg cacgcgggcg gtaaattcga caacaacagc tacaaaatct ccggcggcct
     3841 gcacggcgtg ggcgtgtccg tcgtcaacgc gctgtccgac tgggttacgc tgaccatcta
     3901 ccgcgacggc aaagaacact tcgtccgctt cgtgcgcggc gaaaccgaag agccgctgaa
     3961 agttgtcggc gattccgaca agaaaggcac gaccgtacgc ttcctcgcca gcacggaaac
     4021 tttcggcaac gtcgaataca gcttcgacat cctcgccaaa cgcattcgcg aactttcctt
     4081 cctgaacaac ggcgtggaca tcgaattgac cgacgagcgc gacggcaaac acgaaagctt
     4141 cgccctttcc ggcggcgtgg ccggtttcgt gcaatacatg aaccgcaaaa aaacgccgtt
     4201 gcacgaaaaa atcttctatg cgttcggcga gaaagacggc atgagcgtcg aatgcgcgat
     4261 gcagtggaac gacagctacc aagaaagcgt gcagtgcttc accaacaaca tccctcagcg
     4321 cgacggcggt acgcacttga ccgcgttgcg ccaagtgatg acacgcacca tcaacagcta
     4381 catcgaagcc aacgaagtcg ccaaaaaagc caaagtggaa acagcaggcg acgatatgcg
     4441 cgaaggtttg acctgcgtgt tgtccgtcaa actgcccgac cccaaattct catcccaaac
     4501 caaagacaaa ctggtttcca gcgaaatcgg ccccgttgtc aacgaagtca tcaaccaagc
     4561 gctgaccgac ttccttgaag aaaacccgaa cgaagccaaa atcatcaccg gcaaaatcgt
     4621 cgatgccgcc cgcgcgcgcg aagccgcccg caaagcccgc gaaatcaccc gccgcaaagg
     4681 cgtgatggac ggtttgggcc tgccgggcaa actcgccgac tgccaagaaa aagaccccgc
     4741 attgtcagaa ctttatctgg tcgagggcga ttctgcaggc ggttccgcca tgcaggggcg
     4801 cgaccgcaaa ttccaagcga ttttgccgct taagggcaag attttgaacg tcgaaaaagc
     4861 gcgctttgaa aaaatgctcg ccagtcagga agtagccgct ttgattaccg cgttgggcgc
     4921 gggcatcggc aaagaagaat tcaatgccga gaagctgcgc taccaccgca tcatcatcat
     4981 gaccgatgcc gacgtggacg gcgcgcacat ccgcaccctg ctcctgacct tcttctaccg
     5041 ccaaatgccc gaactggtcg agcgcggcta catctatatc gcccagccgc ctttgtataa
     5101 agcgaaatac ggcaaacagg aacgttacct caaagacgaa ctggaaaaag accaatggct
     5161 gctcggtctt gccttggaaa aagccaaaat cgtttcagac ggccgcacca tcgaaggcgc
     5221 agaacttgcc gacaccgcca aacaattcct gttggcaaaa accgtcatcg aacaggaaag
     5281 ccgcttcgta gacgaactcg tcctgcgcgc catgctacac gcgtcgccca ttgatttgac
     5341 gtcgtctgaa aacgccgata aagccgttgc cgaactttcc ggtctgcttg acgaaaaaga
     5401 agtcgccctc gaacgcatcg aaggtcatga aggacaccgg ttcatcaaaa tcacgcgcaa
     5461 gctgcacggc aacgtcatgg tcagctacat cgaacccaag ttcctcaaca gcaaagccta
     5521 ccaaaccctc acccaaaccg ccgccgcgct caaaggcatg gtcggcgagg gtgccaagct
     5581 ttacaaaggc gaaaacgggt acgacgcgga cagctttgaa accgctttgg acatcttgat
     5641 gagcgttgcc caaaaaggta tgtccatcca acgatacaaa ggcttgggcg agatgaaccc
     5701 cgagcagctg tgggaaacca cgatggatcc cgccgtgcgc cgtctgttga aagtgcgcat
     5761 cgaagatgcc attgccgccg acgaagtatt cgttaccctg atgggcgacg aggtcgaacc
     5821 gcgccgcgcc tttatcgaaa acaacgcgct gattgcccaa aatatcgacg cataagtgcc
     5881 gttttaaaaa aggagacggg catcgtgccg cgtctccttt tggtttgtca aacggaagcc
     5941 ataccgtctg aaaccgcctt tcggagcaaa accatggtca gcatttttga tattttcaaa
     6001 atcggtatcg ggccttccag ttcgcatacg gtcggcccga tgaaggcagc cgccgccttt
     6061 gcggcaggtt tggatgcaca ggctgttcgc atcgtcatcg acatttacgg ctcgctcgcc
     6121 ctgaccggat acggacacgg tacatttgac gcactgatgc tcggtttgga aggcagcctg
     6181 ccgcacgaca tcccgcttgt cggcattccc gaacgcctcg aacgcatccg cacgcagcac
     6241 atcctccggc tcaacgggca agaaatccgc ttcatccccg accgcgacct gaacatactc
     6301 ggcaatcaag tgctgcccaa acaccccaac ggcctgcgtt ttaccgccta tgcttcagac
     6361 ggcatcgtct tgaaagaaca ggtttattat tcggtcggcg gcggctttgt cgttaccgaa
     6421 gaagattttg accggcaggc ggaaacggaa aaagccgttc cctatcccta taccagttgc
     6481 gccgaactgc ttgcccgatg ccgtctgaac cggctcgaca tctccgaagt cgtgttggca
     6541 aacgaagccg cgcttgccgg atgcggcgaa gccgaaatcc gccgccgcgc cgctgccgtt
     6601 gccgaggtta tggaaggctg catcaaacgc ggcttgggtg cggacggcga actgcccggc
     6661 ggattgaacg tccgccgccg cgccccgcag cttgccgcca agctcaaagt cctgcgcgaa
     6721 accgaaatcg tcaacaccca gctctggccg atggtgtacg ccatggcggt caacgaagaa
     6781 aacgccgccg gcggacgcgt cgttaccgca ccgaccaacg gcgcggcagg catcattccc
     6841 gccgtattgc actatttccg caagttcaat ccgcacgcca cacaggaacg cgtcgaaaac
     6901 ttcctgctca ccgcaggcgc aatcggcatc ctctacaaga ccaacgcctc catttccggt
     6961 gcggatgtcg gctgtcaggg cgaagtcggc gtagcgtgtt cgatggcggc gggcgcatac
     7021 gccgaagtca tcggcggcac gcccaaacaa gtggaaaacg ccgccgaaat ggcgatggaa
     7081 caccatttgg ggctgacttg cgaccccgtc ggcggactgg tgcaaatccc ctgcatcgag
     7141 cgcaacggca tcgccgccga aaaagccctc aaactcggca cgctcgcgct tttagaagac
     7201 ggcacggaca aaaaagtctc gctcgacgaa gtcatccgaa ccatgctgca aaccggccgg
     7261 gatatgaagg cgacctacaa agaaacctcg cttgccggac tcgccgccac gctccggaaa
     7321 aaagccgtcc ccgtatccgt gcgcgtggtc gagtgctgag gatggacaga aacgaaaatg
     7381 ccgtctgaaa acagtttttt agacggcatt tcatttattt cttgcggctt taccgtttca
     7441 gtgccagcgt caacacgccc gccgtaacca gccccaagcc tatccattcc tgcgtgttcg
     7501 ggcgttcgtc taagaaaacc accgccatca ggaatgcaaa ccggcgttgt ttgcagcatc
     7561 cggcaaga
//
LOCUS       DAXHNP010000100         7472 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.100, whole genome shotgun sequence.
ACCESSION   DAXHNP010000100 DAXHNP010000000
VERSION     DAXHNP010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7472
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.100"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            140..721
                     /locus_tag="ACFM5C_001477"
     CDS             140..721
                     /locus_tag="ACFM5C_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6069158.1"
                     /translation="MEEKNDYTDAASDNRNGQEIEVGIAGAGDRILAALLNQLFTFLV
                     LLVPFAGLIAFAIKNEGRIGGSEEIFGLLLGMTSFWVGLAGILVYTVVQIYYMSRDGQ
                     SLGKKIMRIRVLKTDGRNPGFVGTVLVREIAWSVLVAIIAAVIGLAVGDNGENAINLL
                     AFLANFVLLFMVKRDRRTLYDILADTVVVKLPK"
     gene            complement(783..1637)
                     /gene="folD"
                     /locus_tag="ACFM5C_001478"
     CDS             complement(783..1637)
                     /gene="folD"
                     /locus_tag="ACFM5C_001478"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFC6069159.1"
                     /translation="MSAQLINGKEVSQKRLQAVAEAVAQRQQDNLHMPCLAVVLVGGD
                     PASAVYVRNKKTACQKCGIKSLSYELPESTSQEELLALVDRLNADSEVDGILVQLPLP
                     KHLDSQAVLERISPDKDVDGFHPYNVGRLAVKMPLMRPCTPKGVMTLLEAYGIDPKGK
                     KAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKG
                     EWIKPGAVVIDVGINRLDDGSLCGDVKFETAKERAAMITPVPGGVGPMTIATLMENTL
                     HAASLHDA"
     gene            1860..1937
                     /locus_tag="ACFM5C_001479"
     tRNA            1860..1937
                     /locus_tag="ACFM5C_001479"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1895..1897,aa:Pro,seq:tgg)
     gene            1962..2038
                     /locus_tag="ACFM5C_001480"
     tRNA            1962..2038
                     /locus_tag="ACFM5C_001480"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1996..1998,aa:Arg,seq:tct)
     gene            2066..2141
                     /locus_tag="ACFM5C_001481"
     tRNA            2066..2141
                     /locus_tag="ACFM5C_001481"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2099..2101,aa:His,seq:gtg)
     gene            2277..2783
                     /gene="rfaE2"
                     /locus_tag="ACFM5C_001482"
     CDS             2277..2783
                     /gene="rfaE2"
                     /locus_tag="ACFM5C_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HFC6069160.1"
                     /translation="MVDAWSVPDFESKICPPEALAARLALLPRPLVFTNGCFDILHRG
                     HVTYLAQARSMGGALVLALNTDASVRRLGKGGDRPINPLENRAAVAAALESVDLVTWF
                     DEDTPAALIEAVKPEILVKGGDWAADKIVGAAETLARGGQVFSIPFLHQTSTTKTLAK
                     IRAAEGGK"
     gene            2780..4558
                     /locus_tag="ACFM5C_001483"
     CDS             2780..4558
                     /locus_tag="ACFM5C_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/type III pantothenate kinase"
                     /protein_id="HFC6069161.1"
                     /translation="MTVLKPSHWRVLAELADGLPQHVSQLARMADMKPQQLNGFWQQM
                     PAHIRGLLRQHDGYWRLVRPLAVFDAEGLRALGERSGFQTALKHECASSNDEILELAR
                     IAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAA
                     VACRRALSRLGLDVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVLPKE
                     VENAASVQSLFQTASRRGNADAAVLLETLLVELDAVLLQYARDGFAPFVAEYQAANRD
                     HGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLRSDDRPVSVPKR
                     RDSERFLLLDGGNSRLKWAWVENGTFATVGSAPYRDLSPLGAEWAEKADGNVRIVGCA
                     VCGEFKKAQVQEQLARKIEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRRFSRNA
                     CVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYPFPTTT
                     GNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLAENT
                     VRVADNLVIHGLLNLIAAEGGESEHT"
     gene            4671..5495
                     /locus_tag="ACFM5C_001484"
     CDS             4671..5495
                     /locus_tag="ACFM5C_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFC6069162.1"
                     /translation="MKWLFTLLAVLNIAVFGGTVGYKLAVKATGGVPENRAVENTPPA
                     TPAADNAAASVEDTAALLKPGDILTEEQAEQLRLKKEAEQKKLKEKKQREEKARREKL
                     AAEKAQAERENGAADALCAAQASLTMDEDDYHRIKGLLGKWSHVASRSVEKRTAKAKP
                     ADKTYRVVLPVSADAENQAAELSAKGFNPIPFDGALSLGVGNSRENAQALQNRLAGAG
                     FGGAHIVEHFAEADRQDDSLSVSRMTVLFTGVNAADADEIRKITSLYGKLNLKSCK"
     gene            complement(6258..7046)
                     /locus_tag="ACFM5C_001485"
     CDS             complement(6258..7046)
                     /locus_tag="ACFM5C_001485"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFC6069163.1"
                     /translation="MLTLYSETFPSRLLLGTAAYPTPEILKQSVRTARPAMITVSLRR
                     AGCGGEAHGQGFWSLLQETGVPVLPNTAGCQSVQEAVTTAQMAREVFETDWIKLELIG
                     DDDTLQPDVFQLVEAAEILIKDGFKVLPYCTEDLIACRRLLDAGCQALMPWAAPIGTG
                     LGAVHAYALNVLRERLPYTPLIIDAGLGLPSQAAQVMEWGFDGVLLNTAVSRSGDPVN
                     MARAFALAVESGRLAFEAGPVEARDKAQASTPTVGQPFWHSAEY"
     gene            complement(7260..7454)
                     /gene="thiS"
                     /locus_tag="ACFM5C_001486"
     CDS             complement(7260..7454)
                     /gene="thiS"
                     /locus_tag="ACFM5C_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFC6069164.1"
                     /translation="MNIILNGGPAELHGTTVADLIAQTAPQKPFAVAVNTGFVAKGAY
                     AETVLNENDKIDIVRPVVGG"
BASE COUNT         1591 a         1922 c         2238 g         1721 t
ORIGIN      
        1 atgtatggcg taaaggaagc gttttaacgc cgtattggga aaatgtaaag ttctttatcg
       61 ggatttcttt aagtattggc gttttcggtg tcgtggcggt agaatcgggg tcagttaaga
      121 acaattatca ggaacggata tggaagaaaa aaacgactac accgacgcgg catccgacaa
      181 ccgcaacggg caggaaattg aagtcggaat tgccggcgca ggcgaccgga tacttgccgc
      241 gctgctgaac caattgttta cctttttggt tttgttggtg ccgtttgccg gactgattgc
      301 tttcgccatc aagaatgaag gcaggattgg cggcagtgag gaaatattcg ggctgctttt
      361 gggcatgact tccttttggg taggactggc gggcattttg gtttataccg tcgttcaaat
      421 ctactatatg agtcgggacg ggcagtcatt gggtaagaag atcatgagaa tcagggtgtt
      481 gaaaaccgac ggccgcaatc cgggttttgt cggcacggtt ttggtacgcg aaatcgcatg
      541 gtcggttttg gttgccatta ttgccgccgt tatcggtctt gcagtaggtg acaacggaga
      601 aaacgccatc aacctgctgg cattccttgc caactttgtc ctgctcttta tggtcaaacg
      661 cgaccgccgc acgctttacg acatactggc ggatacggtt gtcgtcaagc tgcccaaata
      721 aacggacacg gcaaaatgcc gtctgaaagc ctttcagacg gcatttttat cttcagaacc
      781 gctcaagcat cgtgcagtga agccgcgtgc agggtgtttt ccatcaatgt ggcaatcgtc
      841 atcggaccca cgccgccggg aacgggcgta atcatcgccg cccgttcttt tgccgtttca
      901 aatttcacgt cgccgcacag gctgccgtcg tccaaacggt tgatgcccac atcgataacg
      961 accgcgccgg gtttgatcca ttcgcctttg acaaagttcg gaatgcccac gccgaccacc
     1021 aaaatatcgg ctccggcaac ctcgtctgcc agattttcgg ttgcgctgtg gcagaccgtt
     1081 accgttgcgc gcgccagcag cagttccaaa gcctgcgggc ggccgacgat attcgacgcg
     1141 ccgaccacga ccgctttttt ccccttcgga tcaatgccgt aagcttccaa aagcgtcatc
     1201 acgcccttgg gcgtacacgg gcgcatcagc ggcattttga ccgccagcct gccgacattg
     1261 taaggatgga agccgtccac gtccttatcc ggcgaaatac gttccaaaac cgcctggctg
     1321 tcgaggtgct tcggcagggg cagctgaacc agaataccgt ccacttcgga atcggcattc
     1381 aggcggtcga ccagtgccag cagttcttcc tgcgatgttg attcgggcag ttcgtaagac
     1441 agtgatttga tgccgcattt ttggcaggca gttttcttgt tgcggacata aaccgcgctg
     1501 gcagggtcgc ctccgaccaa aaccacggcc aggcaaggca tgtgcagatt gtcctgttgg
     1561 cgttgcgcca ccgcttcggc aaccgcctgc aggcgttttt gcgaaacttc tttaccattg
     1621 atcagttgtg ccgacatatc cgtccttttg ttaaacaggt agaaaatgct gaaaattatc
     1681 gcattttccg tttgttttta cagcaggatg ccgaaaataa atttgccctg aaataaaata
     1741 cggctgtttg gacggattaa atattttttc aaatcaaaaa actatatttt tcatcttggt
     1801 gtcttgaaaa taaatattga cgcatctttc cctgagttgt atagttcgct tcttcaagtc
     1861 ggggcgtagc gcagcccggt tagcgcatct gctttgggag cagagggtcg tgagttcgaa
     1921 tcccaccgcc ccgaccaatc aatcagcacg aatcggcatg agcgcccgta gctcaaccgg
     1981 atagagcacc gaccttctaa gtcgggggtt acaggttcga ttcctgtcgg gcgtgccaag
     2041 aatttgattg aaaaccgttt ttatggtggc tgtagctcag ttggtagagc cccggattgt
     2101 gattccggtt gtcgtgggtt cgagccccat cagccacccc agataaaggc ccgtactttt
     2161 cggtacgggt cttttcccgt ttgcgcgtac tgtccgcgcc gccggctttg cctttcgcat
     2221 atgcttctgt atcatgtggg tttttctgtc ttttatggtt tttgtcggag gctttgatgg
     2281 ttgacgcttg gtctgtccct gattttgaat cgaaaatctg tccgcccgag gcgttggcgg
     2341 cgcgtttggc gttgttgccg cgcccgctgg tgtttaccaa cggctgtttc gacatcctcc
     2401 acagggggca cgttacttat ctggcgcagg cgcgttcgat ggggggcgcg ttggtgctgg
     2461 cgttgaatac cgatgcttcg gtgcggcgtt tgggcaaggg cggcgaccgc ccgattaatc
     2521 ctttggagaa ccgtgccgcc gttgccgccg ctttggaaag tgtggatttg gtaacgtggt
     2581 ttgacgagga tacgccggcg gcgttgattg aggcggtcaa acctgagatt ttggtcaagg
     2641 gcggcgattg ggctgcggat aagattgtcg gtgcggcaga aacgttggcg cgcggcggtc
     2701 aggtgttttc aattccgttt ctgcaccaga cttcgacaac gaagactttg gcaaaaatcc
     2761 gtgcggcaga gggcggaaaa tgacggtttt gaagccttcg cactggcggg tgttggcgga
     2821 gcttgccgac ggtttgccgc aacacgtctc gcaactggcg cgtatggcgg atatgaagcc
     2881 gcagcagctc aacggttttt ggcagcagat gccggcgcac atacgcgggc tgttgcgcca
     2941 acacgacggc tattggcggc tggtgcgccc attggcggtt ttcgatgccg aaggtttgcg
     3001 cgcgttgggg gaaaggtcgg gttttcagac ggcattgaag cacgagtgcg cgtccagcaa
     3061 cgacgagata ctggaattgg cgcggattgc gccggacaag gcgcacaaaa ccatatgtgt
     3121 gacccacctg caaagtaagg gcagggggcg gcaggggcgg aagtggtcgc accgtttggg
     3181 cgagtgtctg atgttcagtt ttggctgggt gtttgaccgg ccgcagtatg agttgggttc
     3241 gctgtcgcct gttgcggcag tggcgtgccg gcgcgccttg tcgcgtttag gtttggatgt
     3301 gcagattaag tggcccaatg atttggttgt cggacgcgac aaattgggcg gcattctgat
     3361 tgaaacggtc aggacgggcg gcaaaacggt tgccgtggtc ggtatcggca tcaattttgt
     3421 cctgcccaag gaagtagaaa atgccgcttc cgtgcaatcg ctgtttcaga cggcatcgcg
     3481 gcggggcaat gccgatgccg ccgtgctgct ggaaacgctg ttggtggaac tggacgcggt
     3541 gttgttgcaa tatgcgcggg acggatttgc gccttttgtg gcggaatatc aggctgccaa
     3601 ccgcgaccac ggcaaggcgg tattgctgtt gcgcgacggc gaaaccgtgt tcgaaggcac
     3661 ggttaaaggc gtggacggac aaggcgtttt gcacttggaa acggcagagg gcaaacagac
     3721 ggtcgtcagc ggcgaaatca gcctgcggtc cgacgacagg ccggtttccg tgccgaagcg
     3781 gcgggattcg gaacgttttc tgctgttgga cggcggcaac agccggctca agtgggcgtg
     3841 ggtggaaaac ggcacgttcg caaccgtcgg tagcgcgccg taccgcgatt tgtcgccttt
     3901 gggcgcggag tgggcggaaa aggcggatgg aaatgtccgc atcgtcggtt gcgccgtgtg
     3961 cggagaattc aaaaaggcac aagtgcagga acagctcgcc cgaaaaatcg agtggctgcc
     4021 gtcttccgca caggctttgg gcatacgcaa ccactaccgc caccccgaag aacacggttc
     4081 cgatcgctgg ttcaacgcct tgggcagccg ccgcttcagc cgcaacgcct gcgtcgtcgt
     4141 cagttgcggc acggcggtaa cggttgacgc gctcaccgat gacggacatt atctcggggg
     4201 aaccatcatg cccggtttcc acctgatgaa agaatcgctc gccgtccgaa ccgccaacct
     4261 caaccggcac gccggtaagc gttatccttt cccgaccaca acgggcaatg ccgtcgccag
     4321 cggcatgatg gatgcggttt gcggctcggt tatgatgatg cacgggcgtt tgaaagaaaa
     4381 aaccggggcg ggcaagcctg tcgatgtcat cattaccggc ggcggcgcgg caaaagttgc
     4441 cgaagccctg ccgcctgcat ttttggcgga aaataccgtg cgcgtggcgg acaacctcgt
     4501 cattcacggg ctgctgaacc tgattgccgc cgaaggcggg gaatcggaac atacttaaaa
     4561 aatacaccct ttttcaacac ggggcggtat ccgtccgaat ccgtccggat tctgccgccc
     4621 gacagactgc cgcccaggcg ggcggggttt caaacattga ggaaattcta atgaaatggc
     4681 tcttcaccct tttggcggta ctcaatattg ccgtattcgg cggcacggtg ggctataaat
     4741 tggccgttaa agcgacgggc ggcgtgccgg aaaaccgggc cgtcgaaaac acgccccccg
     4801 caacgcccgc cgccgacaat gcggcggcat ccgtggagga tacggcggca ctgctcaaac
     4861 cgggcgacat cctgaccgaa gaacaggcgg agcagttgcg cttgaagaaa gaagcggaac
     4921 agaaaaaact gaaagagaaa aaacagcgtg aagaaaaagc ccgccgcgaa aaactcgccg
     4981 ccgaaaaggc gcaggcggaa cgcgaaaacg gcgcggcgga tgccttatgc gccgcgcagg
     5041 caagcctcac gatggacgaa gatgactacc accgcatcaa agggcttttg ggcaaatggt
     5101 cgcacgttgc cagcaggagt gttgaaaaac gcaccgccaa agccaaacct gccgacaaaa
     5161 cctaccgcgt cgtcctgccc gtttccgccg atgccgaaaa tcaggcggcg gagctgtctg
     5221 ccaaaggttt caaccccata ccgtttgacg gcgcattgag tttgggtgtc ggcaacagcc
     5281 gggaaaacgc ccaagccctg caaaaccggc ttgccggcgc cggattcggc ggggcgcata
     5341 ttgtcgaaca ctttgccgaa gccgacaggc aggacgattc tttgagcgtg tcgcgtatga
     5401 cggttttgtt taccggcgtg aatgccgccg atgcggacga aattcgtaaa atcacgtccc
     5461 tatacggcaa actgaacctc aagtcttgca aataggcgcg aaagccggac gataaacgcc
     5521 aaacccaccg cgaaggtggg tttggcgttt cggttttgag tatctgatat ataaaaaggg
     5581 aatgtatgtc tcgtatatgc cgactccaag tgtgaaagtg atgatgggga aatatggtgt
     5641 ttaatggttc ggaacggacg acttccgagt ggttttgatt atacgctaat aataataatt
     5701 atcaataaaa atttaaaaat aaatgcagat tttttgtaat acgatgaaaa ataaacaaat
     5761 taaactattt gccgatgttg gtgattcggg tcggcaaact ttcattgtgt cggacaaatc
     5821 ggggtcggca gtcatagctg agggcttcgt gcctgacgga aataaggttg cccgtgtttg
     5881 aacatccgtc cgattgggcg cggacgaggt tgtcattcgg gggtgtttga gcgtggattc
     5941 ggggatgcaa aagcggtaaa accgttgcgg atgaaggctt acggacggct ttaggtattt
     6001 ttaagtgtat tcaaacaaca acaaaacgct tcttctattg ccgtatttag ggcttgcgcg
     6061 gcagcctgca caccgtggag gccgagtgtt tcgttggttg cggcatcggg acgggcggca
     6121 aggttttccg gccggttttt ccattttttc cgacaaagcc gtgatgccgg ggaatggcgg
     6181 tttgtccgtt tcggaccgcc gccgttttga gccgcgatgc cgtctgaagc cttcagacgg
     6241 catttttgcc gcctttttca atattccgcc gaatgccaaa acggctgtcc gactgtcggc
     6301 gtgctggctt gcgctttgtc gcgtgcttcg accggtccgg cttcaaatgc cagccgtccg
     6361 gattcgacgg cgagtgcgaa ggcgcgtgcc atattgactg gatcgccgct gcgggaaacg
     6421 gcggtgttca aaagcacgcc gtcaaagccc cattccatca cttgtgccgc ctgtgagggc
     6481 aaacccaagc ccgcgtcgat aatcagcggc gtgtagggca ggcgttcgcg caggacgttc
     6541 aacgcgtagg cgtgaaccgc gcccaaaccc gtgccgatcg gggccgccca cggcatcaac
     6601 gcctgacagc ccgcgtcgag caggcggcgg caggcaatca ggtcttcggt gcaataaggc
     6661 agcactttga agccgtcttt aatcaggatt tccgccgctt cgacaagctg gaacacatcc
     6721 ggctgcaagg tgtcgtcatc tccgatgagt tccaatttta tccaatcggt ttcaaacact
     6781 tcgcgcgcca tttgcgccgt cgttaccgct tcctgcacgc tttggcagcc tgccgtgttc
     6841 ggcaggacgg gaacgccggt ttcttgaagc agcgaccaaa acccctgacc gtgcgcctcg
     6901 ccgccgcatc ccgcgcggcg cagcgagacg gtaatcatcg cgggccgggc ggttcggacg
     6961 gattgtttga ggatttcagg ggtcgggtag gcggctgtgc cgagcagcag ccgcgaaggg
     7021 aaagtttcgc tgtacagggt gagcataatg ggttcctttg tatagtggat taacaaaaac
     7081 cagtacggcg ttgcctcgtc ttagctcaaa gaaaacgatt ctctaaggtg ctgaagcact
     7141 aagtgaatcg gttccgtact atttgtactg tctgcggctt cgtcgccttg tcctgattta
     7201 aagttaatcc accataacgt tgttttgggg acaggggtcg tctgaaaagg caaaaccgcc
     7261 tagccgccga ccaccggccg cacgatatcg attttgtcgt tttcgtttaa aacggtttcc
     7321 gcatacgcgc ctttggcgac aaatccggta ttcaccgcta cggcaaaagg cttttgcggc
     7381 gcggtttggg cgatgaggtc ggcaacggtc gtgccgtgaa gttcggcggg tccgccgttt
     7441 aagatgatgt tcatggtttc tcgatgtttc tg
//
LOCUS       DAXHNP010000101         7351 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.101, whole genome shotgun sequence.
ACCESSION   DAXHNP010000101 DAXHNP010000000
VERSION     DAXHNP010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7351
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.101"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            217..429
                     /locus_tag="ACFM5C_001487"
     CDS             217..429
                     /locus_tag="ACFM5C_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFC6069165.1"
                     /translation="METLILDIGGMSCGGCVKSVTRILEGVKGVASVEVSLENKSATV
                     GYDPAQTDAGALIEAVEDGGYDAALK"
     gene            577..2160
                     /locus_tag="ACFM5C_001488"
     CDS             577..2160
                     /locus_tag="ACFM5C_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase regulatory domain-containing
                     protein"
                     /protein_id="HFC6069166.1"
                     /translation="MPNKKKKAAFARAATENGVPDVSNIKNSYDDLMYESKAFSQTAI
                     NALEARARMMGLQPAPAANAKVLELGCSMGGNIITQALYYPDAEFVGIDLSGRQVAQG
                     NAIIEKMGLKNVRLEEKDILTVDESFGKFDYIIVHGIWSWVPDAVKDKIFSICRNNLT
                     EHGIAYISYNVYPGWKRQEQLREIMYFAGRDVLEEPLEARTRKGLDALKALAEILEND
                     KGLDGGGKLPAIQKILNHNFYYIAHEYMEAFNDPIYVNGFIEWANRHRLAYIGDADLH
                     ASFVSWMAEHTRERILALAGGDYIAKEFYSDILSDRQFRRSLLCREEVGDTVRRDESV
                     AVEVIESLNFRPARGETINFDENDTLLSGIRDVMKTGEPFKTEDVAENLARRFPGLTF
                     DRMKINSQLLLQTILGRFSVSSDNAGKQFFEDHKTYVPARFTDYAAAFVEHGAEAFVR
                     PANRYNESTPSFGYGHLYIMRQLSRPTSKQALIETVAENLNIVSTTPDGLTFHPPAEV
                     YVEEILADLADRHFLVSAD"
     gene            2242..3339
                     /locus_tag="ACFM5C_001489"
     CDS             2242..3339
                     /locus_tag="ACFM5C_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HFC6069167.1"
                     /translation="MNQTFTLPDTRPYPQNPIKNHLLLNAYQLAHNSSQASRKLSSGQ
                     LQTEIRGMLEQNHYINLSLALTMSPDAGTYAALLSSVNAVLDCEKEGEVQWFALPVVL
                     VSGCKKERAIEMKLPTEALFACLQNYPHLRALTQETQWLPYLVHSSDLSAVAPDEWWR
                     AKQNTEAAAQHLRRFAPRPLLLPEGQSVHVVYALGFGSGKVQTALGQNLLQAGLPLMQ
                     VWQENLASEGVTLFANPLSPDSPVRALSDGSHTRQRMAMDVFAANAIRAVRMQSPRVG
                     VVAAAKAGGQVLFGFNATDGAFEVVPQVFSWQLSFTDNIAVIQQNFLDLMAECRVEHV
                     YLLHNPLGEQESIPSYAEALKREGHNPFFSA"
     gene            3453..4568
                     /locus_tag="ACFM5C_001490"
     CDS             3453..4568
                     /locus_tag="ACFM5C_001490"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HFC6069168.1"
                     /translation="MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDG
                     GEGTVDAIRHSLDLEEKCLQVTGPFGQKEVMRYFQKEQLALFEVADLVGLGKIPLEKR
                     NPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNTLP
                     VCGQSLLNLASVSTENRYEIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFE
                     AVDQAIQDFYEKVSPATLKLKGAGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKV
                     SDVDLVIIGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLVEDLPSLPFENIQAA
                     FSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI"
     gene            4693..5148
                     /locus_tag="ACFM5C_001491"
     CDS             4693..5148
                     /locus_tag="ACFM5C_001491"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFC6069169.1"
                     /translation="MKKPKILFVCLGNICRSPMAEYILRRRAAEAGIPLEADSAGTSG
                     WHDGEDMHRETAKILKKHGIDASGFTSRKICQSDAAAFDCIIAMDGKNLSELERTFGR
                     RPEKIFKLTDLIPESGYDHVPDPWYTGDFEETFRLADAGCRALLEKISK"
     gene            5219..5695
                     /locus_tag="ACFM5C_001492"
     CDS             5219..5695
                     /locus_tag="ACFM5C_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFC6069170.1"
                     /translation="MKTNFKQKIIEQARSEGLQVTALREQVLDIVLQQSGVIKAYNVL
                     SQMQQQSEGVLAPPTAYRALDFWAEQGVLHKVAAVNGYILCSHAQHECDDHCHDHEEA
                     EAHHSAFILVCTECGTADEQTLSHEWAALRAGVAESGFALKEEHVVLTGICKKCQK"
     gene            5683..6609
                     /locus_tag="ACFM5C_001493"
     CDS             5683..6609
                     /locus_tag="ACFM5C_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6069171.1"
                     /translation="MSEVKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEF
                     GEIGIDGAVLSDNGIPVAEIAGGCLCCTAGPQMGVTVQKMLRDAKPDRLMIEASGLAH
                     AASVIDELKAKPLDSLLEIGAVFTVVNPRQFINPDYAQQALYKDQIGICDVLVASKTD
                     LCTTEQLAEFHDKAAKLFPPKAKVVEVQNAQLDIRWLDIPVIEKSRYRLKALPDNTMG
                     FQSQGFTFPAGRDFDGEKLTNFFNDLPKMTEGLVRAKGVFQVLGTWVWLNWVDGQWGA
                     NQVSWRRDSRFELIAKSFDADLIEQKLKDALE"
     gene            6674..7231
                     /locus_tag="ACFM5C_001494"
     CDS             6674..7231
                     /locus_tag="ACFM5C_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6069172.1"
                     /translation="MKPKFKTVLTALLLAVSLPSMAATHVLMETDMGNIRLVLDESKA
                     PKTVANFVRYARKGFYDDTVFHRVIDGFVIQGGGFTEDLVQKATDKAVANESGNGLKN
                     TAGTIAMARTADPDSATSQFFINLADNASLDYKNGQYGYTVFGRVESGMDTVSKIARV
                     KTATRGFYQNVPVQPVKIRRVVVGQ"
BASE COUNT         1926 a         1811 c         1913 g         1701 t
ORIGIN      
        1 tgttaatcca ctataaatgc gccgattgcc aaggcgatga tgctcaacca gggtttttgc
       61 gaagcgttca ttgttgtcgt cctgatggga attgccgcca ttatgcgcaa gcgtccgtct
      121 ttttccaaac cgccgcaccg tttccgcgtt tgcccaagtt cacgccccga cttacaataa
      181 cgcccgtcag attgcagttc caacgaaagg aaaatgatgg aaacccttat cctcgacatc
      241 ggcggcatga gctgcggcgg ctgcgtcaaa agcgttaccc ggatattgga aggcgtaaaa
      301 ggcgtggcaa gcgtcgaagt cagtcttgaa aacaaaagtg cgaccgtcgg atacgacccc
      361 gcgcaaaccg atgcaggggc gttgattgaa gccgttgaag acggcggcta tgatgccgcg
      421 ttgaaataaa gcggcaaaaa tgccgtctga agccttcgcg cctcccagat gccgtctgaa
      481 gtacgctccg cgccttcaga tggcatttga tttagttgaa cgggtaggat gaattggtta
      541 aacttgcggg caatagtgcc ttcagacaaa caaaatatgc cgaacaaaaa gaaaaaagcc
      601 gcctttgcgc gtgctgcaac ggagaacggt gtgccggacg tgtccaacat caaaaattca
      661 tatgatgatt tgatgtatga atccaaagca ttttcccaaa ccgccatcaa cgccttggag
      721 gctcgcgccc gcatgatggg tttgcagccc gcgcccgccg ccaatgccaa ggtcttggag
      781 ctgggctgtt cgatgggcgg caacatcatc acgcaggctc tttattaccc ggatgcggaa
      841 tttgtcggta tcgacttgtc cggcaggcag gttgcgcagg gcaacgccat cattgaaaaa
      901 atgggcttga aaaatgtgcg tctggaagaa aaagatattt tgaccgtcga tgagtcattc
      961 gggaagtttg actatatcat cgtccacggc atttggtcgt gggtgcctga cgcagttaaa
     1021 gacaaaattt tttcgatttg ccggaacaac ttgaccgaac acggcattgc ctatatttca
     1081 tacaatgttt accccggctg gaaacggcag gagcagttgc gcgaaattat gtactttgcc
     1141 ggcagggatg tgcttgaaga acccttggaa gcacggacgc ggaaaggctt ggacgcgctc
     1201 aaggcgctgg cggaaatttt agaaaacgac aagggcttgg acggcggcgg caaacttccg
     1261 gcgattcaaa aaatattgaa tcataatttt tattacatcg cacacgaata tatggaggcg
     1321 tttaacgacc cgatttacgt caacggcttc atcgaatggg caaaccgcca ccggctggcg
     1381 tatatcgggg atgccgattt gcacgcgtct tttgtttctt ggatggcgga gcatacgcgg
     1441 gagcggattc tggcattggc agggggcgat tatattgcca aagaatttta cagcgatatt
     1501 ttatccgacc gccaattccg ccgttcgctt ttatgccgtg aggaagtcgg ggatactgtc
     1561 aggcgtgacg agtcggttgc cgtcgaagtg atagaaagtt tgaatttccg cccggcaaga
     1621 ggggaaacaa tcaactttga tgaaaacgat accctgcttt cgggcatacg cgatgtgatg
     1681 aaaaccggag agccgtttaa aacggaagat gttgcggaaa atctcgcccg ccgatttccc
     1741 ggtttgacat tcgaccgtat gaaaatcaat tcccagcttt tattgcaaac cattctcggg
     1801 cgtttttctg tttcatcaga caatgcgggc aaacaatttt ttgaagacca taaaacctat
     1861 gtgccggcgc gttttacaga ttatgccgcc gcctttgtgg aacacggcgc ggaagcgttt
     1921 gtccggcctg ccaaccgtta caacgaaagc accccctcat tcggatatgg gcatttgtac
     1981 attatgcggc aattgtcgcg gccgacgagc aaacaggcat tgattgaaac ggttgccgaa
     2041 aacttgaaca tcgtcagcac cacgcccgac ggtttgacat tccatccgcc tgccgaagtg
     2101 tatgtggaag aaatattggc agacttggca gacaggcatt ttctcgtttc ggcggattga
     2161 cgggcaagtc ccgacggcaa tccgtccgat atattttcaa acaggaaaaa cacacactac
     2221 gaaaagcggt acacgacaca tatgaaccag acatttacct tgcccgatac gcgcccgtat
     2281 ccccaaaatc cgattaagaa ccacctgctg ctcaatgcct accagttggc gcataattct
     2341 tcccaggctt cgcgcaaact ctcgtccggc caacttcaaa ccgaaatcag ggggatgctt
     2401 gagcaaaacc actatatcaa cctttccctc gcgttgacga tgtcgcccga tgccggaact
     2461 tatgccgcgc tgctttccag tgtgaacgcg gtactcgatt gcgagaaaga aggcgaagtg
     2521 cagtggttcg ccctgccggt cgtgctggtg tccggctgca agaaagaacg ggcaatcgag
     2581 atgaagctgc cgacggaggc attgtttgcc tgcctgcaaa actatccgca cctgcgcgcg
     2641 ttgacgcaag agacacaatg gctgccttat cttgtgcatt cgtccgattt gagtgcggtc
     2701 gcgccggatg agtggtggcg tgccaaacaa aataccgaag cggcggcgca acacttacgc
     2761 cgtttcgccc cgcgcccttt gctgttgccc gaagggcagt ccgtccacgt cgtttacgcg
     2821 ctgggtttcg gcagcggcaa ggttcagacg gcattgggtc agaaccttct tcaggcaggc
     2881 ctgcccttaa tgcaggtatg gcaggaaaat cttgcatcgg aaggtgttac gctgtttgcc
     2941 aatccacttt ccccggattc tccggtacgc gcgctttcag acggcagcca cacgcgccag
     3001 cgtatggcga tggatgtttt tgcggcaaac gcgatacgcg ccgtccgtat gcagagtccg
     3061 cgcgtcggcg tggtcgctgc ggcaaaggcg ggcggacagg ttttattcgg gtttaatgcg
     3121 accgacggcg cgtttgaagt cgtgccgcag gtgttttcgt ggcagctttc ctttaccgac
     3181 aacatcgccg tcatccagca aaatttcctc gacctgatgg cggagtgccg cgtggaacac
     3241 gtttacctgt tgcacaatcc cttgggcgaa caggaaagca tcccgagcta tgcggaagca
     3301 ttgaaacggg aagggcacaa tccgtttttc agcgcatagt gatttgtagt agtgataggc
     3361 tttctcattt atataataaa tcaaaataaa gagcacaaca ctttttcatt ctgtgttgtg
     3421 ccttgagtga aacgaaagga tgaattataa atatgaagat tgtaattgca ccggattcgt
     3481 ttaaggaaag cttgacagct caacaggtag ctgaagcaat aaaaagaggc ttccaacaat
     3541 cgatagcaga tgtggaatgt ctcctctgtc ctgtcggtga tgggggagaa ggcactgtag
     3601 atgctatccg acattctctt gacctagaag aaaaatgtct tcaagtgaca ggaccttttg
     3661 gacaaaaaga agtcatgcgc tattttcaaa aagaacaact agccctattc gaagttgctg
     3721 atttggttgg tcttggaaaa atcccgctag agaaacgaaa tccattacaa atccaaactc
     3781 gtggtattgg agaattgatt cgccacctca ttagtcaaga aattaaagaa atctatattg
     3841 gcgttggcgg tacggccagt aatgatggag gtattgggat tgctgctggt ttaggttatc
     3901 aattttatga tgaggatgga aataccttac ccgtttgcgg tcaatcctta ctaaacctag
     3961 cttctgtttc aacagaaaat cgctatgaaa ttcctgaaga tgttcacatt cgtattttag
     4021 cagatgttgt gagtccctta tgtggacacc aaggtgcgac ctatacgttt ggcaagcaaa
     4081 aagggttgga ttctactatg tttgaggccg tagatcaggc aatacaagat ttttatgaaa
     4141 aagtctcccc tgcaacatta aaacttaaag gagcaggagc tggtggaggc atcgctggtg
     4201 gtttgtgcgc ctttgctcag gcaagtatcg tatctggaat tgacacctgc ctggacttga
     4261 ttgactttga taagaaagtg tcagatgttg acttggttat cattggtgaa ggaagactag
     4321 atcgtcaaag tttagcaggg aaagcgccta ttggtgtagc aaaaagaacc cctgtcggag
     4381 ttcctgttgt cgctatttgt ggcagtctcg ttgaagattt gccttccctg ccatttgaaa
     4441 atatccaagc tgccttttct attttggaga aaagtgaacc tttagaagat agtttgaaaa
     4501 atgccagtct ctatttggag catacggctt ctaatattgg acacttatta aatatgccta
     4561 agatttagcc aaaccatttc ttccagatgg atgttttggc tggttctgcc ttatgcggtt
     4621 acgattaacc gaccgatgcc gtctgaaagg gtttccgctt cagacggcat cgcgccggaa
     4681 cagggagggg atatgaaaaa accgaaaatc ctttttgtct gcctcggcaa catctgccgt
     4741 tcgccgatgg cggaatacat tttgcgccgc cgcgccgccg aagcgggcat tccccttgaa
     4801 gcggacagcg cggggacatc gggctggcac gacggcgaag atatgcaccg cgagacggca
     4861 aagatattga aaaaacacgg tatcgatgct tcaggcttta ccagccgcaa aatctgccaa
     4921 agcgatgcgg cggcgtttga ctgcatcatc gcgatggacg gcaagaattt gtccgaattg
     4981 gaaagaacct tcggcaggcg gccggaaaaa atattcaagc tgaccgacct gatacccgaa
     5041 agcggttacg accatgtccc cgatccgtgg tatacgggcg attttgaaga aaccttcagg
     5101 cttgcggatg cgggctgtcg ggcattgttg gaaaagattt ccaaataaag caattgaata
     5161 caaatataaa accgcctcct gccgtatcgg ttgttcagac ggcataaaca gagaatttat
     5221 gaaaacaaat ttcaaacaga aaattatcga acaggcacgc agcgaaggct tgcaggtaac
     5281 cgctttgcgc gagcaggtat tagatattgt cttgcagcaa agcggcgtga ttaaagccta
     5341 caacgtcttg tcgcagatgc agcagcaaag cgagggcgtg cttgcgccgc cgaccgccta
     5401 ccgcgccctt gatttttggg cggagcaggg cgttttgcac aaagtggcgg cggtcaacgg
     5461 ctatattttg tgcagccacg cgcagcacga gtgcgacgac cattgccacg accacgaaga
     5521 agccgaagcg caccacagcg cgtttatttt ggtctgcacc gaatgcggca cggcggacga
     5581 gcaaaccctc agccacgagt gggcggcact gcgcgcaggc gttgccgaaa gcggctttgc
     5641 gctgaaagaa gaacacgttg ttttaactgg gatttgtaaa aaatgtcaga agtgaaaaaa
     5701 accaaagtcc acctgatttc aggttttctg ggaacaggca aaaccactgc gctcaaaagc
     5761 ctgatggcgc aaaaagaccc gaacgaaaaa tgggtcatca tcgtcaacga gttcggcgaa
     5821 atcggcattg acggcgcggt attgagcgac aacggtatcc ctgtggcaga aatcgccggc
     5881 ggctgtttgt gttgcaccgc cggcccgcaa atgggcgtaa ccgtgcagaa aatgctgcgc
     5941 gacgccaagc ccgaccgcct gatgattgaa gcaagcggac tggctcacgc agccagcgtc
     6001 atcgacgaac tcaaagccaa accgctggac agccttttgg aaatcggcgc cgtctttacc
     6061 gtcgtcaatc cgcgccagtt catcaacccc gattacgcgc aacaggcgtt gtataaagac
     6121 caaatcggca tctgcgacgt attggtcgcc agcaaaaccg atttatgcac caccgaacag
     6181 cttgccgaat ttcacgacaa agcggcaaaa ctgttcccgc ccaaagccaa agtggtcgaa
     6241 gtccaaaacg cacaactcga catccggtgg ctcgatattc ccgtcatcga aaaatcacgc
     6301 taccgcctca aagccctgcc ggacaacacc atgggcttcc agtcgcaagg tttcacattc
     6361 cccgccggac gcgatttcga cggcgaaaag ctgaccaact ttttcaacga cctgcccaaa
     6421 atgaccgaag gactcgtccg cgccaaaggc gtgtttcaag tattgggaac gtgggtgtgg
     6481 ctcaactggg tagacggaca gtggggcgcg aaccaagtct catggcggcg cgattcgcgt
     6541 tttgaattga ttgccaaatc gtttgatgcg gatttaatcg aacaaaaact taaagatgca
     6601 ttggaatagc gttaacgcgc tttcagacgg catatgaaat gaaaatgccg tctgaaggtc
     6661 tgaggaggat gggatgaaac ccaaatttaa aaccgtttta accgcgctgc ttttggcggt
     6721 ttccctgccg tctatggcgg caacccatgt tttgatggaa accgatatgg gcaatatccg
     6781 tttggttttg gacgagtcca aagcccccaa aaccgttgct aatttcgtgc gctatgcccg
     6841 aaaaggcttt tacgacgaca ccgtttttca ccgcgttatc gacggtttcg ttatccaagg
     6901 cggcggattt accgaagact tggtacaaaa ggcaaccgat aaagccgttg ccaacgaatc
     6961 cggcaacggc ttgaaaaaca ccgccggcac catcgccatg gcgcggacgg cagaccccga
     7021 ttccgccacc agccaattct ttatcaatct cgcggacaac gcttcgctcg actacaaaaa
     7081 cggacaatac ggctataccg ttttcggcag ggtcgaaagc ggaatggaca cagtttccaa
     7141 aatcgcccgc gtcaaaaccg ccacgcgcgg cttttatcaa aatgtacccg tacagcccgt
     7201 caaaatccgt cgcgttgttg tcggacagta acacgcagac agacgttcag acggcgtcgc
     7261 ccgtttcaca aaaaacgccg tctgaagtga aaaaatattt taaaacagac agttgatatt
     7321 gacaaattca aaccgaggat tttaaaatgc t
//
LOCUS       DAXHNP010000102         7336 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.102, whole genome shotgun sequence.
ACCESSION   DAXHNP010000102 DAXHNP010000000
VERSION     DAXHNP010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7336
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.102"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(172..2775)
                     /gene="pepN"
                     /locus_tag="ACFM5C_001495"
     CDS             complement(172..2775)
                     /gene="pepN"
                     /locus_tag="ACFM5C_001495"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HFC6069173.1"
                     /translation="MSKTVRYLKDYQTPAYRILETDLHFDIAEPQTVVKSRLTVEPQR
                     VGEPLVLDGSAKLLSVKINGAAADYMLEGETLTIADVPSERFTVEVETEILPAENKSL
                     MGLYASAGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDG
                     GECSDGRHWVKWEDPFAKPSYLFALVAGDLAVTEDRFTTMSGRNVKIEFYTTEADKPK
                     VGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADS
                     RTATDTDFEGIESVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRA
                     VRRIENIRLLRQHQFPEDAGPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLG
                     EEGFQKGMKLYFQRHDGQAVTCDDFRATMADANGINLDQFALWYSQAGTPVLEAEGRL
                     KNNVFELTIKQTVPPTPDMADKQPMMIPVKIGLLNRNGEAVAFDYQGKRATEAVLLLA
                     EAEQTFPLEGVTEAVVPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTL
                     YRRAVAANLAALSDGVELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGA
                     ENIDPLRYHQAREALLDTLAVRFLPKWHELNRQAAKQENQSYEYSPEAAGWRTLRNVC
                     RAFVLCADPAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKFSDD
                     ALVMDKYFALVGSSRRSDTLQQVQTALQHPKFSLENPNKARSLIGSFSRNVPHFHAED
                     GSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSK
                     DVGEIVGKILD"
     gene            complement(2911..3705)
                     /locus_tag="ACFM5C_001496"
     CDS             complement(2911..3705)
                     /locus_tag="ACFM5C_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFC6069174.1"
                     /translation="MTTILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQ
                     TGGDFMQHHLHQIVAISCCMRWGQDKVHVGTIGEMDDGEEVVIAKFFELIEKHTPQLV
                     SWNGGGFDLPVLHYRSLLYGINAARYWDMGDGDFGDSRDFKWNNYISRYHQRHCDLMD
                     LLALYQPRANVPLDDMAKLCGFPGKLGMDGSKVWEAFHAGKLKEIRNYCETDAVNTYL
                     MYLRFCLVSGRFDADEYEMEIKRIRNYLSAQTEDKPHWAEFVQAWK"
     gene            complement(4454..5323)
                     /locus_tag="ACFM5C_001497"
     CDS             complement(4454..5323)
                     /locus_tag="ACFM5C_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HFC6069175.1"
                     /translation="MKFIFFVLYVLQFLPFALLHKIADLTGLLAYLLVKPRRRIGEIN
                     LAKCFSEWSEEKRKTVLKQHFKHMAKLMLEYGLYWYAPAGRLKSLVRYRNKHYLDDAL
                     AAGEKVIILYPHFTAFEMAVYALNQDIPLISMYSHQKNKILDEQILKGRNRYHNVFLI
                     GRTEGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANA
                     KVIPAIPVREADNTVTLHFYPAWESFPSEDAQADAQRMNRFIEDRVREHPEQYFWLHK
                     RFKTRPEGSPDFY"
     gene            complement(5374..5910)
                     /gene="ruvC"
                     /locus_tag="ACFM5C_001498"
     CDS             complement(5374..5910)
                     /gene="ruvC"
                     /locus_tag="ACFM5C_001498"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFC6069176.1"
                     /translation="MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAS
                     LADRIAVIVRHIGEVVAVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLP
                     VSEYTALQVKQAVVGKGKAAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHG
                     LAAKLNPSGMQVKRGRFQ"
     gene            complement(5913..6152)
                     /locus_tag="ACFM5C_001499"
     CDS             complement(5913..6152)
                     /locus_tag="ACFM5C_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HFC6069177.1"
                     /translation="MPHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLL
                     VCVMEQCGGNQSKASVMLGLNRNTLRKKLIQHGLL"
     gene            complement(6183..7193)
                     /gene="dusB"
                     /locus_tag="ACFM5C_001500"
     CDS             complement(6183..7193)
                     /gene="dusB"
                     /locus_tag="ACFM5C_001500"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HFC6069178.1"
                     /translation="MHIGGYFIDNPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTS
                     DPTLRNTKKTLHRSDFADEGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPA
                     KKVCNAQAGSALMQNEPLVAAILEAVVRAVDVPVTLKTRLGWHDDHKNLPAVARIAED
                     CGIAALAVHGRTRTQMYKGEAAYDLIAETKCRLNIPVWVNGDITSPQKAQAVLKQTAA
                     DGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAECSAAILNHVRAMHAFYGETAGV
                     RIARKHIGWYIDEMPDGEQTRREINRLDSAAAQYDMLAGYLERLAGKTDRWACAYRQN
                     AV"
BASE COUNT         1643 a         1938 c         1918 g         1837 t
ORIGIN      
        1 gtactatctg tactgtctgc ggctttgtcg ccttgtcctg atttttgtta atccactata
       61 attaatatga ctttgcggcc gttttgccat tgcgtaataa aacgatgggg aagtgatgat
      121 aaaacgtgtg tgtaactata tcagacggca ttgtttttct gtttgacggc ctcaatccaa
      181 aattttgccg acgatttcgc ccacgtcttt cgacaatcct tcctgcgccc gaatgcgctg
      241 caatgcttgt ttcaccaagt ttttgcggtg cggctcgagc ttgttgcaga ggttgaacgc
      301 ctgcaccagg cgggcggcga cctgcgggtt aaagcggtcg atttcgatga ctttgtcggc
      361 gatgaagcgg tagccgctgc cgtcttctgc gtggaaatgc gggacgttgc ggctgaagct
      421 gccgatgagc gagcgggctt tgttgggatt ttcgaggctg aacttcggat gctgcaaggc
      481 ggtttgaacc tgttgcaggg tgtcgctgcg gcggcttgag ccgacgaggg cgaaatattt
      541 gtccatcacc agcgcgtcgt ctgaaaactt gtcggcaaac tgagccagca ggcggttgcg
      601 cgtatcgctt tcgttgccgt taacggcgga caggatgccc cattcgtggg tcatgttttg
      661 cgccatttcg ccgtattttt cggcaacggt ttcgatgtgc gcggggtcgg cgcacaggac
      721 gaaggcgcgg cagacgttgc gcagcgtgcg ccagccggca gcttcggggc tgtactcgta
      781 gctttggttt tcctgcttcg ccgcctgacg gttcaattcg tgccatttcg gcaggaagcg
      841 gacggcaagc gtatccaaca aggcttcgcg cgcctgatgg tagcgcagcg ggtcgatgtt
      901 ttctgcgccg tcccacagtt cggcttcaga cggaacgccc aaaagcaggg ctttgaaggc
      961 gttgtccaag aggtcgtctg aaatgacttt ttcgacggcg gcaagcagtt tttcatgttt
     1021 cggcaactcg acgccgtctg aaagcgcggc aaggttggcg gcgacggcgc ggcggtagag
     1081 cgtttgcgcg gcttcccagc gcgtgaaggc gtcgctgtcg tgggcaagca ggagcagcag
     1141 gtcatcgtcg ctgtacggat agttcagatg cactggcgca ctgaacccgc gcagcagcga
     1201 gggaacgacg gcttcggtta cgccttcgag cgggaaggtc tgttcggctt cggccagcag
     1261 caacacggct tcggtcgcgc gtttgccctg ataatcaaat gccaccgctt cgccgttgcg
     1321 gttcagcagc ccgattttga cgggaatcat catcggctgc ttgtccgcca tatcgggcgt
     1381 gggcggcacg gtttgtttaa tggtcaactc gaaaacattg tttttcagac gaccttccgc
     1441 ttccaaaacg ggcgtgcccg cctggctgta ccacaaggcg aactggtcga gattaatgcc
     1501 gttcgcgtcc gccattgtcg cgcggaaatc gtcgcaggtc acggcttgcc cgtcgtggcg
     1561 ttggaaatag agcttcatgc ctttttggaa gccctcttcg ccgagcaggg tgtgatacat
     1621 ccgcaccact tccgcgcctt tttcataaac ggtcatggtg tagaaattgt tcatctcctc
     1681 atagctggcg gggcgcaccg gatgggcggt cgggcctgcg tcttcgggga actggtgctg
     1741 gcgcagcagg cggatgttct cgatgcggcg cacggcgcgg ctggcgcggt cgccggaaaa
     1801 ttcttggtcg cggaacacgg tcagcccttc cttcagtgaa agctggaacc agtcgcggca
     1861 ggtaacgcgg ttgcccgtcc agttgtggaa atattcgtgt ccgatcacgg attcgatgcc
     1921 ttcaaaatcg gtatcggtgg cggttcggct gtcggcaagg acgaacttgg tgttaaagat
     1981 gttcaaaccc ttgttttcca tcgcacccat attgaaatcg cctacggcga cgaccatgaa
     2041 aatatccaag tcgtattcca agccgaagcg cgtttcgtcc cacttcatcg cgtttttcaa
     2101 ggattccacg gcaaagccga ccttgggctt gtccgcttcg gtggtgtaaa actcgatttt
     2161 gacgtttctg ccgctcatgg tggtgaaacg gtcttccgtt accgccaaat cgcccgcgac
     2221 caaagcaaac aaatagctcg gtttggcaaa cgggtcttcc catttcaccc aatggcggcc
     2281 gtctgaacac tcgccgccgt cgattttgtt gccgttggag agcaaaacgg gatagcgttt
     2341 tttgtccgca acgatggtgg tcgtgaattt ggacatcaca tccggacggt cgatatagaa
     2401 cgtgattttg cggaagccct ccggctcgca ctgggtaaac aggttaccgg cggacgcata
     2461 cagccccatc agcgatttgt tttccgccgg caggatttcg gtttccactt cgacggtgaa
     2521 gcgttcggac ggcacgtctg caatcgtcag cgtctcgcct tccaacatat aatccgccgc
     2581 cgcgccgttg attttgacgg acaagagttt cgccgaaccg tccaacacca gcggctcccc
     2641 taccctctgc ggctcaaccg tcaaacggga tttcacgacg gtttgcggtt cggcaatatc
     2701 gaaatgcagg tcggtttcga gaatacggta ggcaggcgtt tggtaatctt tcagataacg
     2761 gacggttttg ctcatttttt tctttcaata ttgtttggtt tgactggaaa aggcttcaga
     2821 cggcataggc aaaccctgca ccgatatgcc gtatgaaacc gaaacatcag tgcggacgca
     2881 ccgtcaaaca accggtttta atttcaatct ttatttccac gcttggacaa attctgccca
     2941 atgcggtttg tcttctgttt gggcggaaag atagtttctg atccgcttga tttccatttc
     3001 gtattcgtcc gcgtcgaatc tgccgctgac cagacaaaaa cgcagataca tcaaatacgt
     3061 attcacggca tcggtttcac aataattgcg gatttccttc aatttaccgg catggaatgc
     3121 ctcccagacc ttgctgccgt ccatacccaa tttacccgga aaaccgcaca gtttcgccat
     3181 atcgtccagc ggcacattcg ccctcggctg gtaaagcgcg agcaaatcca tcaaatcgca
     3241 atgacgttgg tggtagcggc tgatgtagtt gttccacttg aaatcgcggc tgtcgccgaa
     3301 atcgccgtcg cccatatccc aatagcgcgc ggcgttgatg ccgtacagca atgaacggta
     3361 atgcaggaca ggcaggtcga aaccgccgcc gttccaactg accagttgcg gcgtatgttt
     3421 ttcaatcaac tcgaaaaatt tggcaatcac gacttcttcg ccatcgtcca tctcgccgat
     3481 tgtaccgaca tggactttat cctgccccca acgcatgcag cacgaaatcg ccacaatctg
     3541 atgaagatga tgctgcataa aatccccacc cgtctgagca cggcgttttt gctgggcaaa
     3601 cagcaccact tcatcgtcgg gcagcgagga cggcagctcg tacaatgttc ggataccctg
     3661 cacatcgggt acggtttcaa tatcgaaagc caaaatcgtg gtcatgacag caccttgtat
     3721 ttaaaacaga cttgcgccta ttgtgtcatt aaaaggccga taaaaaaaga ggcaaccccc
     3781 cacaggattg ccccaatacc tcaaatcaga gatttacgct tcacaaacaa tacaggcttt
     3841 cgcctgcggc tttacccgcg tagctcaact ctacgccggc aaacttttgt ttcaccgttt
     3901 ccgatgaaac cccgaccaat cgcaagactg accggaaaat cctttcaaac agcatttcct
     3961 gcctgtcgtg taattccatg tagcgaaatg tacgccattt tctacgcttt gccaagcatt
     4021 ttttacaata taaatgtcaa aacattaatt ttataaaatt gctgaaaata ttaaatatat
     4081 ggatttttat tttttatatt tcaataaata taaatttaat tttgatttat atttaaattt
     4141 aagcataaaa tgtcaaatat taaaggaaac atgaaaggca tatattaaat atttatttat
     4201 aacgctatgt ttttaaagaa aattaatttt aatatattaa ctagattgtc tgcatatatt
     4261 catgggtttg cggtatttct tccaaaacct gcttcgaatt tcccgaccaa gtcttaaaaa
     4321 tattgttttt gagatactta aatagcagcg attatcaaat gaaatctgtt catataatct
     4381 gccattttgc atttaaaaaa acaatcagga gtttcgactc gaaatgcctg atatgttttg
     4441 taattttacg tagtcagtaa aaatcggggc tgccttccgg acgggtttta aaacgcttgt
     4501 gcagccaaaa atactgctcg ggatgttcgc gcaccctgtc ttcgataaaa cggttcatgc
     4561 gctgcgcgtc ggcttgcgca tcttcactcg gaaaggattc ccaagcaggg tagaaatgca
     4621 atgtaaccgt attgtccgcc tccctgacgg gaatggcggg tatcactttt gcatttgcaa
     4681 gcgcggcaat gcggctcaat ccggtaatcg ttgccgtctg aataccgaaa aaatccacaa
     4741 aaaccgaatc gttgcgtccg aaatcctgat cgggcagata cagaaacggc gcgctgcttt
     4801 tgcggaactg tttgacgagg gcgcgcagcc cttcggtgcg cccgataagg aagacgttgt
     4861 gatagcggtt gcggcctttc aaaatctgtt cgtccaatat cttgtttttt tgatgggaat
     4921 acatactgat cagcgggata tcctgattaa gcgcgtacac cgccatctcg aacgcggtga
     4981 agtgcggata caggatgatg actttttccc ccgccgccag cgcgtcgtcc aaataatgct
     5041 tattgcggta gcgcaccagc gatttcaaac gtccggcagg cgcgtaccaa tataaaccgt
     5101 attccaacat cagtttcgcc atgtgtttga aatgctgttt caacacggtt ttacgctttt
     5161 cctcactcca ttcggaaaaa cattttgcca aattgatttc gccgatacgg cggcgcggtt
     5221 tgaccagaag gtaggcaagc aaacccgtca ggtcggcaat cttgtgcagc agcgcaaacg
     5281 gcagaaactg caaaacatac agtacaaaaa atataaattt catctcgata cacattttct
     5341 tttcagacgg caaaatacaa atgccgtctg aaactattga aaccttccgc gcttgacctg
     5401 catccctgaa ggattgagtt tggcggcaag cccgtggttg cgtaaggcgt gggtcagcgc
     5461 gacggcaaga ccgtccgccg catccgcctg cggcgttccc gaaagcccca gcatctgcac
     5521 caccatatgc tgcacctgtt ctttcgccgc cttgcctttg ccgactaccg cctgtttgac
     5581 ctgcaaggcc gtgtattccg aaacgggcag cttatggctg accaatgccg ccaatgccgc
     5641 gcccctagcc tgacccagca tcagcgtcga tgcaggattg acgttgacga acacctgttc
     5701 cactgccgcc tgttgaggct tgtaaacggc aacgacttcg ccgatatgcc gcacaatcac
     5761 ggcaatcctg tctgccagag acgcatcggc aggcgttttg atgcagccgg aggcaacata
     5821 aaaatgatcc cgccccctga catcgatgat gccgaaaccc gttacgcggc tgcccgggtc
     5881 aatgcccaag atacggacgg ttgccgacat attcacaaca aaccgtgttg aatcagtttt
     5941 ttacgcaagg tattgcggtt cagccccagc atcacggagg ctttggactg gttgccgccg
     6001 cattgctcca tcacgcacac cagcagcggt ttttccacct gatgcaagac catatcgtac
     6061 acgccgcaag gttcggtacc gttcaggtct ttgaaatatt gttccaaatt ttgtctgata
     6121 cattgggaaa tatcgggaag ggtatggggc ataatcgcgc tttcaaaagg ataatcgggt
     6181 gttcagacgg cattttggcg gtaggcgcac gcccaacggt cggtttttcc ggcaagtctt
     6241 tcaagataac ctgcaagcat gtcgtattgc gccgccgcac tgtccaagcg gttgatttca
     6301 cgacgtgtct gttcgccgtc gggcatttcg tcgatgtacc agcctatgtg tttgcgtgca
     6361 atgcgcacac cggcggtctc accataaaac gcgtgcatgg cgcggacgtg gttcaaaatg
     6421 gcggcactgc attctgccaa actcaaggca ggcggtaaaa caccgtgttc ggcgtaatgt
     6481 ttcaaatcgc ggaagaacca cggtctgcct tgcgcgccgc gccctatcat gatgccgtct
     6541 gcggcggttt gtttaaggac ggcttgggct ttttgcggcg aagtaatgtc gccgttgacc
     6601 caaaccggga tgttcagacg gcatttggtt tcggcaatca ggtcgtaagc cgcttcacct
     6661 ttgtacattt gcgtgcgagt gcgtccgtgg acggcaaggg cggcaatgcc gcaatcttcg
     6721 gcgatgcggg cgacggcagg caggtttttg tggtcgtcgt gccagcccaa acgggttttg
     6781 agggtaacgg gtacgtccac cgcacggacg acggcttcga gaatggcggc aaccagcggc
     6841 tcgttctgca tcagcgcgct gccggcttgg gcattgcaca ctttcttggc gggacagccc
     6901 atgttgatgt cgataacctg cgccccaagg ctgacgttgt aacgcgcggc atccgccatc
     6961 tgctgcggat cgctgccggc aatctgcacg gcaacgatgc cgccttcatc ggcaaaatcg
     7021 ctgcggtgca gggtcttttt ggtatttcta agtgtcgggt cgctggtcag catttcgcac
     7081 accgcccaac ccgcgccgaa atcgcggcag aggcggcgga agggtttgtc ggtaatgccc
     7141 gccatcggtg caagtgcgat ggggttgtcg ataaaatagc cgccgatgtg cataatggat
     7201 ccgcgtttca aaaaagtgcg ccattgtaca ttttttaagc aggatttcca atctccggac
     7261 gcgcccgcga ttggggcgga caccgtttta tggcataatc cgcacacaga ttccctgccc
     7321 cgccactcac aggcgg
//
LOCUS       DAXHNP010000103         7281 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.103, whole genome shotgun sequence.
ACCESSION   DAXHNP010000103 DAXHNP010000000
VERSION     DAXHNP010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7281
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.103"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..146)
                     /locus_tag="ACFM5C_001501"
                     /pseudo
     CDS             complement(1..146)
                     /locus_tag="ACFM5C_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            complement(256..513)
                     /locus_tag="ACFM5C_001502"
                     /pseudo
     CDS             complement(256..513)
                     /locus_tag="ACFM5C_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981065.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            complement(542..871)
                     /locus_tag="ACFM5C_001503"
     CDS             complement(542..871)
                     /locus_tag="ACFM5C_001503"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6069179.1"
                     /translation="MGGLIIEDLQEGFGKEAVKGKEITVHYTGWLEDGTKFDSSLDRR
                     QPLTITLGVGQVIKGWDEGFGGMKESGKRKLTIPSEMAYGAHGAGGVIPPHATLIFEV
                     ELLKVYE"
     gene            complement(949..1167)
                     /locus_tag="ACFM5C_001504"
     CDS             complement(949..1167)
                     /locus_tag="ACFM5C_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
                     /protein_id="HFC6069180.1"
                     /translation="MLKTLTFAALHFSTAFSITYVLTGSIGISGAVALVEPLINTVVF
                     YFHEKAWNLYEKNKTVQQTQPFQLHRCS"
     gene            1289..2242
                     /locus_tag="ACFM5C_001505"
     CDS             1289..2242
                     /locus_tag="ACFM5C_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6069181.1"
                     /translation="MNQKKVVVLDADTLPGRTFHFDFPHELAVYGTTDAAETAGRVRD
                     AHIIITNKVMISADIIAANPQLELIAVSATGVNNVDIGAAEAAGVAVCNVRAYGNESV
                     AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIQDLNGKTLAVFGRGNIGR
                     TLAGYAQAFGMGVVFAEHKHAPAVREGYVAFENAVRTADVLSLHCPLNAQTENMIGEN
                     ELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTNEPPKNGNPLLKARL
                     PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
     gene            complement(2316..4373)
                     /gene="metG"
                     /locus_tag="ACFM5C_001506"
     CDS             complement(2316..4373)
                     /gene="metG"
                     /locus_tag="ACFM5C_001506"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFC6069182.1"
                     /translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGNECY
                     YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTGFNIGYDNYYSTHSPENKQ
                     FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
                     TTYSPTELINPYSAVSGAKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQPE
                     ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
                     CDRIGIDFDEYFKAGSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
                     VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
                     LVGKYVNIAARASGFIAKRFEGKLKDVSDSALLAKLTAQSEAIAECYENREYARALRD
                     IMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPQTATN
                     AARFLNLDAITWTNTRVTLGKHAINKYKHLMQRVEQKQVDDLIEANKQSIAAAAAPAA
                     EESKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIA
                     ASYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATAEGKLKLLDVDAGAQPGD
                     KVG"
     gene            complement(4489..6327)
                     /gene="glmS"
                     /locus_tag="ACFM5C_001507"
     CDS             complement(4489..6327)
                     /gene="glmS"
                     /locus_tag="ACFM5C_001507"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFC6069183.1"
                     /translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGKIK
                     RVRRVGRVQLMEDAAREKGIAGSIGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
                     IENFESERKRLEGLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
                     IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
                     SDGIKRLTDKSGLPAERKVKVSELSLASLELGPYSHFMQKEIHEQPRAIADTAEVFLD
                     GGFIPENFGKNAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPADVEIASEYR
                     YRSVIADPDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
                     YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
                     ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
                     GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATKGVHVI
                     RAPRHVGKLSPVVHTIPVQLLAYHTALARGTDVDKPRNLAKSVTVE"
     gene            6433..6558
                     /locus_tag="ACFM5C_001508"
     CDS             6433..6558
                     /locus_tag="ACFM5C_001508"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069184.1"
                     /translation="MPSEGLGLLKKGRDFPVYPRWAFRRHCLPPVYSFYKSILTS"
     gene            6609..7130
                     /locus_tag="ACFM5C_001509"
     CDS             6609..7130
                     /locus_tag="ACFM5C_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069185.1"
                     /translation="MKQMLLAVGVAAVLAGCGKDAGGYEGYWREKSDKKEGMIAVKKE
                     KGNYFLNKINVVTGKEESMLLSEKDGELSINTGIGEIPIKLSDDGKELYVERRQYVKT
                     DAAMKDKIIAHQKKCGQTAQAYRDARNALPSNQTYQQHLAAIEQLKRRFEAEFDELEK
                     EIKCNGRSPALLL"
BASE COUNT         1531 a         1721 c         2177 g         1852 t
ORIGIN      
        1 ttgacttcaa cttccttaac atattttcct ttaatgtcgg tggaggttgc cacgccggca
       61 gaactgttgt cgccgggcca ttcgccgtga ttcaggtaat actctgtgac ggctgatttt
      121 tgaccttcag ccaaaaggat ggattcgtca ttcccgcgca ggcgggaatc cagccttgtc
      181 ggtacggaaa cttatcggga aaacggtttc tttagatttt acgtcctaga tccccacttt
      241 cgtgggaatg acggtttagg tatttttata gaaagccgta ggtggtgttt ctatgcaaac
      301 gacagatgaa tcatcgcggc aggttgacgg caggtgcttg gtgttgattt tgtcgtcggt
      361 gccgttggcg gtggcggctt tgacgtcgtc ggtggctttg tcggtgcgcg caaccggcag
      421 tccgcagaac cattttaccg aaccgtcttg acgcttggcc cacagggaga gttttttgtc
      481 tttgatttcg ttgtttacgc cgcttgaagc cattatgtca gacggtattg cccgggcagc
      541 tttattcgta cactttcagc agctcgactt caaatatcaa agtggcgtgc gggggaatca
      601 cgccgccggc accgtgtgcg ccgtaagcca tttcagaagg gatggtcagc ttgcgtttgc
      661 cgctttcctt cattccgccg aagccttcgt cccagccttt gatgacttgt ccgacgccga
      721 gcgtgatggt cagcggctgg cggcggtcga ggctggagtc gaatttggta ccgtcttcca
      781 gccaacctgt gtaatgcacg gtaatctctt tgcctttaac tgcttctttt ccgaagcctt
      841 cttgcaagtc ttcaataatc aggccgccca tatttgtcct ttcattgctt gttggtcaaa
      901 acggcaaggg taacataccg tccgtcgaag tcaaatgccg ctcaaacgtc agctgcatcg
      961 gtgcagctga aacggctgtg tttgttggac tgttttattt ttttcgtaaa ggttccatgc
     1021 tttttcatgg aaatagaaaa cgacggtgtt gattaggggc tcgaccagcg cgaccgcccc
     1081 ggatatgcct atactgcccg tcagtacata ggttatactg aaggcggtgc tgaaatgcag
     1141 tgcggcaaaa gtcagggttt taagcatcat cctctcccga attggacatt gacggaggga
     1201 tgataaagat tatcataagg ctgtgcggtt taaatttgct atttgctgtt agtgtaaata
     1261 aatcattttc taaataggga taaaaattat gaatcagaag aaagtagtcg tattggatgc
     1321 ggatacttta cccggtcgga cttttcactt cgatttccca cacgagcttg cggtttacgg
     1381 tacgacagat gctgcggaaa cggcagggcg ggtgcgcgac gcgcatatta tcatcaccaa
     1441 taaggtgatg atttccgccg acattattgc ggctaatcct cagcttgagc tgattgccgt
     1501 cagtgcgacc ggtgtgaaca atgtcgatat tggggcggcg gaggcggcgg gcgttgcggt
     1561 atgcaatgtc cgcgcctacg gaaacgaatc ggttgcggaa catgccttta tgctgatgat
     1621 tgccctgatg cggaatttgc ctgcctatca gcgtgatgtt gcggcaggat tatgggaaaa
     1681 atcgccgttt ttctgccatt acggcgcgcc gattcaggat ttgaacggca aaacgctggc
     1741 ggttttcgga cgcggcaata tcggacggac gctggcagga tacgcgcagg cgttcgggat
     1801 gggggtggtg tttgccgaac acaaacacgc gcccgctgtg cgcgaaggct atgttgcctt
     1861 tgaaaatgcg gtacggactg ccgatgtgtt gtcgctgcac tgtccgctga acgcacaaac
     1921 tgaaaatatg ataggcgaaa atgagttgcg gcagatgaag cccggtgcgg ttttgattaa
     1981 ttgcgggcgc ggcgggctgg tggatgaaaa cgcgctgctt gccgcactca aatacgggca
     2041 gatcggcggg gcgggcgtgg atgttttgac gaatgagccg cctaaaaacg gcaatcctct
     2101 gttgaaggca cgacttccca atctgattgt tacgccgcat accgcgtggg caagccgcga
     2161 ggctttggac aggctgtttg atatattgtt ggcgaacatt cacgcctttg tgaaaggcga
     2221 ggcgcaaaac cgggtggttt gagcttgtcg ggatgacgaa acaatgccgt ctgaacgcct
     2281 caagggttca gacggcattg ttttgacatt tctgcttaac cgactttgtc gcccggttgt
     2341 gcgcctgcat ccacatccaa gagcttcagt ttgccctctg ccgtggcggc actcaaaatc
     2401 ataccttcgg atacgccgaa ttttgccatt ttgcgcgggg cgaagttggc gacggcgatg
     2461 accattcttc cgtttaactc ggcagggttg ggataagacg cggcgatacc ggagaagatg
     2521 atgcgttttt caaaaccgaa atcgaggtcg aatttcaaaa gtttggtgct gccctcgacg
     2581 gcttcgcagt tcaagacttt ggcgacgcgc atatcaattt tcataaagtc gtcgaagctg
     2641 gcctgttcgg cgactttttc gtatttgctc tcttcggcgg caggtgcggc tgcggcggcg
     2701 atgctttgtt tgttggcttc gattaaatcg tccacttgtt tttgctccac tcgttgcatt
     2761 aaatgtttgt atttgttgat ggcgtgtttg cccaaggtta cccttgtgtt cgtccaagta
     2821 atcgcgtcca gattgaggaa acgcgcggca ttggtggcgg tttgcggcaa tacgggggcg
     2881 aggtaggcgg tcagcatcgt aaaggcgttg atgagttcgc tgcatacttc gtgcaggcgt
     2941 tcgtcttggc cttcttgttt ggcgagttcc caaggtttgt tggcatcaac gtattcatta
     3001 acaatgtctg ccaatgccat gatgtcgcgc agggcgcggg cgtattcgcg gttttcgtag
     3061 cattcggcaa tggcttcgct ttgcgcagtc agttttgcca gcaatgcgct gtcggaaacg
     3121 tctttgagtt ttccttcaaa gcgtttggcg atgaaacctg acgcgcgggc ggcgatgttg
     3181 acgtatttgc cgacgaggtc gctgttgacg cgcgagataa agtcttgcag gttcaaatcg
     3241 atgtcttcga ttttgctgtt gagtttggcg gcgatgtagt agcgcatcca ctcggggttt
     3301 aggccttgtt ccagatagga tttggcggta ataaacgtgc cgcgcgattt ggacattttt
     3361 tgtccgtcca cggtcaaaaa gccgtgtgcg tacacgccgg tcggggcgcg gtggccggag
     3421 aaatgcagca tggcgggcca gaacagggcg tggaaataga ggatgtcttt gccgatgaag
     3481 tggtacatct cggtttggct gccggctttg aagtattcgt cgaaatcgat gccgatgcgg
     3541 tcgcacaggt ttttaaacga tgccatgtag ccgacgggcg cgtccagcca gacgtagaag
     3601 tatttgcccg gcgcgtcggg gatttcaaaa ccgaaatacg gcgcgtcgcg ggaaatgtcc
     3661 cagtcggaca gggtggtttc ttcgccttcg cccagccatt ctttcatttt gttgagggct
     3721 tctggttgca gatggggttt gccgtcgtgc gggttgttgc cggaagtcca tgctttgagg
     3781 aagtcggcgc attcgcccag tttgaagaag aagtgttcgg attcgcgcaa ttcgggtttc
     3841 gcgccggaaa cggcggaata cgggttaatc agttcggtcg gggaataggt cgtgccgcag
     3901 acttcgcagt tgtcgccgta ttggtcttgg gcgtggcatt tcgggcattc gcctttaacg
     3961 aagcggtcgg gcaggaacat ttgtttttcg gggtcgaaaa gctgctcgat gacgcggctc
     4021 tcaatcttgc cgttggcttt cagcgcgcgg taaatatctt gggaaaactg tttgttttca
     4081 ggggaatggg tgctgtaata attgtcgtag ccgatgttga aaccggtaaa gtcggcgagg
     4141 tgttcttcgc gcactttggc aatcatgtct tcgggcgcga tgccttgttt ttgcgcggca
     4201 agcatcacgg gcgtgccgtg ggtgtcgtcg gcgcagcagt agtagcattc gttgccgcgc
     4261 agtttttgga agcgcaccca aacgtcggtt tggatgtgtt cgaccatgtg gccgaggtgg
     4321 atgctgccgt tggcataggg cagggcggag gtaactaaga ttttgcgtgt catattgtgc
     4381 tttgcaaaca atgggtaaag gcggattata ccgcaaatca aacggggaaa tgccgtctga
     4441 agcctgaaaa atcgggcttc agacggcatt tttgcaaaac ggcgggagtt attcgacggt
     4501 tacggatttc gccaggttgc gcggcttgtc cacatcggta ccgcgtgcga gggcggtgtg
     4561 gtaggcgagg agctgcacgg ggatagtatg cacgacgggg gacagtttgc cgacgtggcg
     4621 cggtgcgcgg ataacgtgca cacctttggt ggcattaaaa ttactgtcga ggtcggcaaa
     4681 gacgaaaagt tcgccgccgc gcgcgccgac ttcctgcata ttggctttga ctttgtccaa
     4741 caggctgtcg ttgggtgcga tgacgacgac gggcatgttt tcgtccacca aggcaagcgg
     4801 cccgtgcttc agttcgccgg caggataggc ttcggcgtgg atgtaggtga tttccttcag
     4861 ttttaacgcg ccttcgaggg caatcgggta atggatgccg cgccccaaaa acagcgcgct
     4921 ggttttcttg gcaaactgtt gcgcccaggc ggcaatttgc ggttcgaggt ttaaagcgtg
     4981 ctgcacgctg ccgggaagct ggcggagttc ttcggtgtaa cgtgcttcgt cttcttcgga
     5041 aaccaaaccg cgcactttcg ccagcgttac cgccaaaccg aacagcgcaa ccagctgcgt
     5101 ggtaaatgct ttggttgagg cgacgccgat ttccgcaccg gcacgggtat aaagcacgag
     5161 gctgctttcg cgcggcaggg cggattccat cacgttgcag atggagaggc tgtggcggtg
     5221 tcccaaggat tttgcgtatt tcaacgcctc catcgtgtcc agcgtttcgc cggattggga
     5281 aatggtaatg accagttggt ccggatcggc aatcacgctg cggtatcggt attcgctggc
     5341 gatttcgaca tcggccggga ttttggcgat ggattccaac caatatttgg cggtcagcgc
     5401 ggcgtaatag gacgtgccgc aggcaaggat tttgacgctg cggatgcttt caaacacgct
     5461 tttggcgttt ttgccgaagt tttcggggat gaagccgccg tcgaggaaaa cctccgccgt
     5521 gtctgcaatc gcgcgcggct gctcatggat ttccttttgc ataaagtggc tgtacggtcc
     5581 cagttccaaa gaggcgagcg agagttcgga taccttgact ttgcgttcgg caggcaggcc
     5641 gcttttatcg gtcagccgtt tgatgccgtc tgaagccagc agcgcgatgt cgccgtcttc
     5701 gaggtacgcc acgcggcgcg taaaggcgat gacggcggat acgtccgaag cgataaaggt
     5761 ttcatcgtcg cccaaagcga ccaaaagcgg gcagcccata cgcgccacaa ctaattcatc
     5821 aggcttgtct tgggcaataa ccgcgatggc gtatgcgccg tggaaacgtt tgaccgcttc
     5881 ctgtaccgct tcaaacagcc tgccgccgtt ttgcgcgtat tcgtgattga tgctgtgtgc
     5941 gatgacttcg gtatccgttt gcgattcaaa ccggtatccc aaaccttcca agcgtttgcg
     6001 ttcgctttca aagttttcga tgatgccgtt gtggacgacg gctatcatcc caccggaaat
     6061 atgcggatgg gcattcggct cggtaacgcc gccgtgtgtc gcccaacgcg tatgtccgat
     6121 gccgatgctg cccgctattc ctttttcacg ggcagcgtcc tccataagct gcacgcgtcc
     6181 gacgcggcgc acgcgtttga ttttgccgtc ggtgttgacg gcaatacctg atgagtcata
     6241 accccggtat tcgaggcgtt tgaggccgtc ggtcagaaaa tcgacgacgt tgtgatgggc
     6301 gcggatggcg ccgacgatac cgcacataac tgttccttag tatcaggttg aaaaaaaaca
     6361 ggtgcggacg gctcccgtgc cgcaccttcc gcttcggatt ataaaccgcc tcccgcgccg
     6421 aaaaacagca aaatgccgtc tgaaggcttg ggcttgctca aaaaagggag ggatttccct
     6481 gtttatccga gatgggcgtt cagacggcat tgcctgccgc cggtttatag tttttacaaa
     6541 tcaatattga caagctgaaa aaaaaaaaca atatactcgc tcggtcttaa tgttaaagga
     6601 gtatggaaat gaaacaaatg cttttagccg tcggcgtggc ggcggtgttg gcgggctgcg
     6661 gcaaggatgc cggcggttac gagggttatt ggcgcgaaaa atcggacaaa aaagagggta
     6721 tgattgccgt caaaaaagaa aaaggcaatt acttccttaa taaaatcaac gtggttacag
     6781 gtaaggaaga atctatgctt ttgtctgaaa aagacggcga gctttcgata aacacgggga
     6841 taggggaaat cccgatcaaa ctttccgacg acgggaaaga gctgtatgtc gaacgcaggc
     6901 agtatgtcaa aaccgatgcg gcgatgaagg acaaaatcat cgcccatcag aaaaagtgcg
     6961 gacaaacagc acaggcatac cgcgacgcgc gaaatgcgtt gccgtcaaac cagacgtatc
     7021 agcagcatct ggcggcgatc gagcaattga aacggcggtt tgaagccgag tttgacgaat
     7081 tggaaaaaga aatcaaatgc aacggcagaa gcccggcatt gttgctttag taggggacaa
     7141 ccgggaggat gccgccgtcc gaatcggatg tgcggtttct gtaccggtac gggcgggcag
     7201 gaatgtccgc cttttttgtt cggatgcgtt tgaatacccg tttgattccg accgtttgca
     7261 aggggtattt ccgttcgggc g
//
LOCUS       DAXHNP010000104         7192 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.104, whole genome shotgun sequence.
ACCESSION   DAXHNP010000104 DAXHNP010000000
VERSION     DAXHNP010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7192
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.104"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..597
                     /locus_tag="ACFM5C_001510"
     CDS             <1..597
                     /locus_tag="ACFM5C_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6069186.1"
                     /translation="YGYLARYTQDNATKWLSDTPGQDAYSINLIEISVYYKKTDQGWV
                     LEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPEY
                     EAYEDKRHIPENPYFHKLYYIKKGENPAIITHRNNRINQTEEDNYSTGVGSCINGFPV
                     RYYPFIREKQQLTQQELVGYHQQVEQLVQSFVNNPSKK"
     gene            614..889
                     /locus_tag="ACFM5C_001511"
     CDS             614..889
                     /locus_tag="ACFM5C_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069187.1"
                     /translation="MNEGEVVLTPEQIQTLYGYAFRGDTYGGWRYLANLGDRYADNAA
                     AIVGKDANLNGLNLWMKKGVENLWDDTVGKKIRLMCISVFWIVVFNL"
     gene            complement(976..2109)
                     /locus_tag="ACFM5C_001512"
     CDS             complement(976..2109)
                     /locus_tag="ACFM5C_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069188.1"
                     /translation="MFKKFKLVLLSFFALVFAFWLGTGIAYEINPRWFLSDTATEIPE
                     NPNAFVAKLARLFRNADRAVVIVKESMRTEESLAGAVDDGPLQSEKDYLALAIRLSRL
                     KEKAKWFHVTEQEHGKEVWLDYHIGEGGLVAVSLSQRSPEAFVNAEYLYRNDRPFSVN
                     VYGGTAHGENYETTGEYRVVWQPDGSVFDASGRGKIGEDVYEHCLGCYQMAQVYLAKY
                     RDVANDEQKVWDFREESNRIASDSRDSVFYQNMRELMPRGMKANSLVVGYDADGLPQK
                     VYWSFDNGKKRQSFEYYLKNGNLFIAQSSTVALKADGVTADIQTYHAQQTWYLDGGRI
                     IREEKQGDKLPDFPLNLENLEKEVSRYAEAAARRSGGRRDLSH"
     gene            complement(2283..2732)
                     /locus_tag="ACFM5C_001513"
     CDS             complement(2283..2732)
                     /locus_tag="ACFM5C_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069189.1"
                     /translation="MENRFEKIVKDIFSFTQFVSEAENEIPNQSSRYYDCWWELEILN
                     ASALEDWEISGKPEKWEKWTEKYQTEALQSVKHLFAEEVPENNIVCNISHFLHFADRA
                     EADIPNQSRSYAEYWWEMEMFKMSVLEDWERSGRPLNWEKWQRQYRS"
     gene            complement(2898..3296)
                     /locus_tag="ACFM5C_001514"
     CDS             complement(2898..3296)
                     /locus_tag="ACFM5C_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069190.1"
                     /translation="MCKPLQFSNNNHRFYVDKICVTEQDVNILASDRNYELNIEIFID
                     DIIHFQITDESYKVKFSEYLFENKTENNSDGNPTANYFFEIIDDSYMDWLKEESFGFF
                     EKKYYKAYIFFFSDSVIEVISSTEPVFYSK"
     gene            complement(3737..4273)
                     /locus_tag="ACFM5C_001515"
     CDS             complement(3737..4273)
                     /locus_tag="ACFM5C_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HFC6069191.1"
                     /translation="MDYNQTVLSHLQNFWKHHDIKGFTWALGRIVEELPDFQVFQVIP
                     NHEDEPWVYVSSGIGQFLGQEFFIISPFETPEHIETLAMLASASMHYPDRFQLGKTVN
                     IGRPWVEQSSFQHFLISLPYPYGQELEYMDNVRFFWLLPITQPERLFLNTHSVEDLET
                     RFDELGIDYLDINRASVI"
     gene            complement(4354..4896)
                     /locus_tag="ACFM5C_001516"
     CDS             complement(4354..4896)
                     /locus_tag="ACFM5C_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HFC6069192.1"
                     /translation="MINHIEKYTGTISHGSKSDSGSQYKLNIAAIPSSPNRDLKTYIT
                     LGLSKHDLNYKSRSEILFVCSLKYDENQIFPFLRWLAETIIENKKILLRGQVVYLPRS
                     IVDSTKMDALYVSAPFYFDDDFQVCYGEHYNIVFPLLVPLYKQEAELVEKKGWNAFEQ
                     FLLDNEVGNLSDMNRKPFTW"
     gene            complement(5024..5251)
                     /locus_tag="ACFM5C_001517"
     CDS             complement(5024..5251)
                     /locus_tag="ACFM5C_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069193.1"
                     /translation="MDIKFNTLGVILNGVNPEEKFIKIIDDQENTGGFLILLSSNDKF
                     SSFDSYDDWVENLEILKEYLQESHWIIKWVG"
     gene            complement(5310..5633)
                     /locus_tag="ACFM5C_001518"
     CDS             complement(5310..5633)
                     /locus_tag="ACFM5C_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HFC6069194.1"
                     /translation="MIIDEKSTSDVLKQYQELGFDLTKPMIIEFFIGGSQKNLQSIES
                     RLISYRQDFQISIEQDEFGEMWTCYCSVNIVPSLENILAIETTLFGIAQKNDCNYEGF
                     GSYGN"
     gene            complement(5623..5976)
                     /locus_tag="ACFM5C_001519"
     CDS             complement(5623..5976)
                     /locus_tag="ACFM5C_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069195.1"
                     /translation="MGIKNEQIIICKKYNTEIYPVSDVSKIGVAENVKQANLYPINGL
                     RHRPKGDTNGWYIWAGENFSYDKNFFLPLHTFHLQIWRPEIIPFLTLPPGYRFLIGEN
                     GYEDVWFDELLLNDN"
     gene            complement(5960..>7192)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001520"
     CDS             complement(5960..>7192)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6069196.1"
                     /translation="IKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANKKIFEHNAKL
                     DRWGNSMEFVNGIAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
                     AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKA
                     AVSGDFSKSYTCSFHGSTLVKTADGYKAIAHIQAGDRVLSKDEASGETGYKPVTTRYG
                     NPYQETVYIEVSDGIGNSQTLISNRIHPFYSQGKWIQAGRLKKGDTLLSESGAKQTVQ
                     NITLKQQPLKAYNLTVADWHTYFVKGDKAETEGVWVHNSCPPYKRPNNATTKAQRESV
                     QGKPCVECGKLAEKMIADHKKPLVVEYYETGTIDKSKMRAIESVQPQCPTCSAKQGGR
                     LSQYSKEQKRKLSNGNKK"
BASE COUNT         1971 a         1592 c         1412 g         2217 t
ORIGIN      
        1 tatggctatc ttgcacggta tacgcaagac aatgccacaa aatggctttc cgacacgccc
       61 gggcaggatg cttactccat taatttgata gagattagcg tctattacaa aaaaaccgac
      121 caaggctggg ttcttgagcc atacaaccag caaaacaaag cacactttat ccaatttcta
      181 cgcgacggtt tggatagcgt ggacgatatt gttatccgaa aagatgcgtg tagtttaagc
      241 acgactatgg gagaaagatt gcttacttac ggggttaaaa aaatgccatc tgcctatcct
      301 gaatatgaag cttatgaaga taaaagacat attcctgaaa atccatattt tcataaactt
      361 tactatatta aaaaaggaga aaatccggcg attattactc atcggaataa tcgaataaac
      421 caaactgaag aagataatta cagcactggc gtaggttcct gtattaacgg tttcccggta
      481 cggtattacc cgtttattcg ggaaaagcag cagctcacac agcaggagtt ggtaggttat
      541 caccaacaag tagagcaatt ggtacagagt tttgtaaaca atccaagtaa aaaataattt
      601 aaaggatctt attatgaatg agggtgaagt tgttttaaca ccagaacaaa tccaaacctt
      661 gtatggttat gctttccgtg gcgataccta tggcggttgg cgttatttgg ctaatttggg
      721 tgaccgttat gcggataatg ctgccgcaat tgtcggtaag gatgcaaact taaatggttt
      781 gaatttatgg atgaaaaaag gtgtggaaaa cctatgggat gatacggtcg gtaaaaagat
      841 ccgtttaatg tgtatttccg ttttttggat tgtggttttc aatttgtagc gaatcggatt
      901 cggcatatac ggcattgcaa aaagcgtttg actctccaat gccgtctgaa aaccggtttc
      961 agacggcatt tgcgttcagt gagaaaggtc gcgcctgccg cccgaacgtc tcgccgcagc
     1021 ctctgcataa cggctcacct ctttttccaa attttccaag ttcaaaggaa aatcaggcag
     1081 tttgtctccc tgtttctctt cgcggataat ccgcccgcca tccaaatacc acgtctgttg
     1141 cgcatgatag gtctgtatat ccgccgttac gccatccgct ttcaatgcta ccgtcgaaga
     1201 ttgtgcaata aaaagatttc cgtttttcaa ataatattcg aaactctggc gtttttttcc
     1261 attgtcgaaa ctccaataga ctttttgcgg cagaccgtcc gcatcatagc cgaccacaag
     1321 actgttcgcc ttcatccccc ggggcatcaa ttcccgcata ttctgataaa acacagaatc
     1381 gcgcgagtcc gatgcaatcc ggttgctctc ttcgcggaag tcccaaacct tctgctcatc
     1441 attcgcgaca tcccggtatt tcgccaaata tacctgggcc atctgataac acccgaggca
     1501 atgctcataa acatcttccc cgattttccc gcgccccgac gcatcaaata ccgaaccgtc
     1561 cggttgccaa acaacccgat attctcctgt cgtttcataa ttttctccgt gagccgttcc
     1621 gccgtacaca tttacagaaa acggacgatc gttccgatac agatattcgg cattaacaaa
     1681 cgcttccggc gagcgttgcg aaagcgaaac cgcaaccaaa ccgccctcgc cgatatggta
     1741 atccagccaa acctctttcc catgttcctg ctccgttacg tgaaaccatt tcgccttttc
     1801 tttcaaacga ctgagccgga tagcgagcgc gagataatcc ttctccgact gcaacggacc
     1861 gtcatccaca gctccggcaa gactttcctc cgtcctcatc gattccttca cgatgacaac
     1921 cgccctgtcg gcatttcgga acaggcgggc aagtttcgcc acaaaagcat tcggattttc
     1981 aggtatttca gttgccgtat cgctcaaaaa ccaacgcgga ttaatctcat aggcaatacc
     2041 cgtccccagc caaaaggcaa atacaagggc aaaaaatgac aacaatacca gtttgaattt
     2101 tttaaacata tttatttttc gtttaattcg tttaacagga tatatcgatt atatcagacg
     2161 agctttgatt gtttgatttt taatctaatc tacgcttgct gccgtacttt aaaaaaacct
     2221 atgcaggctg cggcttgtta ctcttgtttg ctttgattca aattttcaac taattcaaat
     2281 gcttaagatc gatattgcct ttgccatttt tcccaattta acggtcttcc cgagcgttcc
     2341 caatcttcta aaaccgacat tttgaacatt tccatttccc accaatattc ggcatatgaa
     2401 cgtgattgat tgggaatgtc ggcttctgcc cgatcggcaa aatgcaaaaa atgagaaata
     2461 ttgcaaacta tattattttc aggaacttct tcggcaaata gatgcttgac tgactgtaac
     2521 gcttcggtct gatatttttc tgtccatttc tcccattttt caggctttcc cgatatttcc
     2581 caatcttcca atgcggaagc attcaagatt tccaattccc accaacagtc gtaataacgg
     2641 gaggattggt taggaatctc attttctgct tcggaaacaa attgggtaaa actaaaaata
     2701 tccttaacga ttttttcaaa tctattttcc ataggttgcc gcccctccca attgcgtgcc
     2761 aacaatttcg gcaaaatcaa gccggcaagc cccggcatcc tgtgctaatc ggagaaaatg
     2821 ccgtctgaaa gccgaatacc gcttcagacg gcattttgat tgttgggttt ttaatcagag
     2881 ctttgtttga taatttgtta ttttgaataa aatacaggtt ctgtcgagct gataacttct
     2941 attacagaat cgctaaaaaa gaaaatgtaa gccttataat atttcttttc aaaaaaacca
     3001 aaactttctt ctttcaacca gtccatataa ctgtcatcta ttatctcgaa aaaataattt
     3061 gcagtaggat ttccatccga attattttct gttttatttt cgaataaata ttctgaaaat
     3121 tttactttat aagattcatc tgttatttga aaatgaatta tatcgtcaat aaatatttca
     3181 atatttaatt cataatttcg gtcggatgcc aaaatgttca catcttgttc ggtaacacaa
     3241 attttgtcca cataaaatct gtgattattg ttagaaaatt gtaatggttt acacaatcgt
     3301 tttccatatc taatttttgt tttcttattg ccctgccgga taaagcaggt ctgcctccgt
     3361 actgtctatc ctcacattta ctttcctgcc atcggctttt atctccccgg ttttaccgtt
     3421 tttgccaact ttgcggcttt ggcggcggca atgttgaagg cggcttcgac ggtttcggcg
     3481 gcattggggt tgacccgtac tcatccgcaa acggcaacac gacggacggt gtttgctttt
     3541 cagccgtctg ccgttttgac caaggtgctg ccgtggaagg agcaggtgta ggatttttga
     3601 agaactcagt tctcaatatc ctatttcaaa tgaaggaaat gccgtctgaa aattaaacac
     3661 ggtttcagac ggcattttga ttgttggatt tccaatccaa cctacgcttg ctgaaagatt
     3721 tcaaacaaca taaatatcaa ataacgcttg cacgatttat atccaaataa tcaataccta
     3781 gctcatcaaa tctcgtttcc aagtcttcta ctgaatgagt attcaagaaa agtctttctg
     3841 gctgggtaat tggcaataac cagaaaaatc ggacattatc catatattcc aattcttgcc
     3901 cataaggata aggcagagaa atcagaaaat gctggaagga tgattgctca acccacggtc
     3961 tgccgatatt gaccgttttc cctaattgaa atcgatcggg ataatgcata cttgcagatg
     4021 ccagcattgc caaggtctca atatgttcag gtgtttcaaa tgggctgatg ataaaaaact
     4081 cctgccctaa aaattgacct attccagagc tgacataaac ccaaggctca tcttcatgat
     4141 taggaatcac ttggaaaact tggaaatcgg gaagttcttc aacaatcctt cctaaagccc
     4201 aagtaaatcc tttaatatca tgatgtttcc aaaaattttg caaatgagat aaaacagttt
     4261 ggttatagtc catgcttttt agcctgtttt caaaggtcgc ctgaaacctg aaacaaggtt
     4321 tttcagacgg cattgaccgt ttgaagaagg tatttaccaa gtaaacggtt tccgattcat
     4381 atccgaaagg ttgccaactt cattatccaa caagaactgc tcaaaagcat tccaaccttt
     4441 cttttccacc aattctgctt cctgtttata caaggggaca agcaaaggga aaacgatatt
     4501 gtagtgttcg ccataacaga cctgaaaatc atcatcgaaa taaaatgggg cggaaacata
     4561 cagtgcatcc atttttgttg aatcaacaat gcttctgggc aaataaacaa cctgcccccg
     4621 aagaaggatt tttttattct caatgatggt ttctgccaac catcttaaaa atggaaaaat
     4681 ctgattttca tcatatttta aagaacatac aaaaagtatt tcagatctgc ttttataatt
     4741 cagatcatgt ttgcttaacc ctaaagtaat ataagttttt aaatccctgt taggggaaga
     4801 gggaatagct gcgatattta atttgtactg acttcccgaa tcacttttcg agccatgaga
     4861 aatagtgcct gtatattttt caatatgatt aatcatattt ttcttagctt cccatcactg
     4921 tatcgaaata atcatagacc agattgagac aaaacgcctt gttcccattg atagaaagtc
     4981 cgtctgaaaa gtaaaagcgt ttcagacgga ctacgtttgc cgactatccg acccacttta
     5041 ttatccaatg agattcttgc aggtattctt ttaatatttc taagttttcg acccagtcat
     5101 cgtaactgtc aaatgatgag aatttgtcat ttgaagataa cagtatcaga aatcccccgg
     5161 tattttcctg atcatcaata atttttatga atttttcttc aggattgacc ccattcagga
     5221 taacccccaa agtattgaat tttatgtcca tagacacacc ctaatcttta atgggaatat
     5281 ggttttttca acccaaccta cactttttgt tagttcccat acgaaccaaa accttcataa
     5341 ttacaatcat ttttttgtgc aataccaaat aacgtagttt caatagctaa aatgttttca
     5401 agggaaggga cgatattgac ggaacaatag caagtccaca tttctccgaa ttcatcttgt
     5461 tcaatactga tttgaaaatc ttgccgataa gaaatgagcc ggctttctat tgattgcaga
     5521 ttcttttgag aacctcctat aaaaaactct attatcatag gttttgtcaa atcaaaccct
     5581 agttcttgat attgtttcag tacatctgaa gtagattttt cgtcaattat catttaatag
     5641 caactcatca aaccatacgt cttcataacc gttttcccca attaaaaaac ggtaaccggg
     5701 cggaagtgtc aaaaagggga tgatttcggg tcgccatatt tgcaaatgga aagtatgcaa
     5761 gggcaggaaa aaatttttat cataggagaa gttttcaccg gcccagatat accaaccgtt
     5821 agtatcacct ttgggacggt gccttaaccc gttaatcgga tacaggtttg cctgtttgac
     5881 attttcagca acaccgattt ttgaaacatc ggaaacagga tatatttctg tattatattt
     5941 tttacaaatt attatttgtt cattttttat tcccattact cagtttcctt ttctgttctt
     6001 ttgaatattg gcttaatctc cctccttgtt ttgcagaaca agtcggacat tgcggttgta
     6061 ctgattcaat tgctctcatc ttagatttgt caattgtccc tgtttcataa tactcgacaa
     6121 ctaatggttt tttatggtcg gcaatcattt tttcggctaa tttaccgcat tcaacgcagg
     6181 gttttccttg tacactttct cgttgtgctt ttgtcgttgc gttatttggt ctcttatatg
     6241 gcggacaaga attatgaacc cacacccctt ccgtttccgc cttatctccc ttgacgaagt
     6301 aagtatgcca gtcggcaacg gtcaggttgt aggctttgag cggctgctgt ttgagggtaa
     6361 tgttttgaac cgtctgtttt gcgccgcttt cggaaagcag ggtgtcgcct tttttcagac
     6421 gacctgcctg tatccatttt ccttgactgt aaaacggatg gatgcggttg gaaatcaggg
     6481 tttggctgtt gccgatgccg tctgaaactt caatgtaaac ggtttcctgg tacggattac
     6541 cgtatcgggt ggtaacgggt ttgtatcccg tttctccgct tgcctcgtcc ttggaaagga
     6601 cgcggtctcc ggcttgaata tgggcaatgg ctttgtagcc gtctgccgtt ttgaccaagg
     6661 tgctgccgtg gaaggagcag gtgtaggatt tagaaaaatc cccactaacc gcagccttcc
     6721 ccggttttgc cgcctttgtc aggtttttga ctttggcaaa cggcaggacg ttgaccaggg
     6781 cttcgacggt ttcggcggca ttggggtttt cctgtatcca ccggtcaacg gcttcgcgcg
     6841 tattcttttc aaagcccgcc acgctgccca agccgccgat gacggcgaat ttgccctcgg
     6901 cgggtaaggg ggcgatgttg cgcattgcgg ctttgtctat ggcatagcgc gttccgtaca
     6961 gtatgtcgcc tatgcctaag gcttcgcccg cgctgataaa ggggttgagt gctccggcgg
     7021 cgatgccgtt gacaaactcc atgctgttgc cccagcggtc gagcttggca ttgtgctcga
     7081 atattttttt gttggcttca tcggcgcggt cggagaaatt gctgccgagg ttgttgtagt
     7141 tgtcggatat gcgttgccgg atgctgcggg tgtcggtcgg attgagttta at
//
LOCUS       DAXHNP010000105         7164 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.105, whole genome shotgun sequence.
ACCESSION   DAXHNP010000105 DAXHNP010000000
VERSION     DAXHNP010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7164
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.105"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(93..452)
                     /gene="rnpB"
                     /locus_tag="ACFM5C_001521"
     ncRNA           complement(93..452)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACFM5C_001521"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(531..1634)
                     /gene="prfB"
                     /locus_tag="ACFM5C_001522"
     CDS             complement(531..1634)
                     /gene="prfB"
                     /locus_tag="ACFM5C_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFC6069197.1"
                     /translation="MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSE
                     DPELWNDPKRAQEIGKERKILEGIVLTLDNIATGIEDNRMLIEMTVEENDEEGFAAVQ
                     EDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAER
                     KGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTS
                     FASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC
                     QNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSR
                     IKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV"
     gene            complement(1737..2630)
                     /locus_tag="ACFM5C_001523"
     CDS             complement(1737..2630)
                     /locus_tag="ACFM5C_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HFC6069198.1"
                     /translation="MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVG
                     LALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEI
                     LGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRRIQQFPIKFAAVATDFETGKAVAFN
                     QGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISAR
                     PGKNISQGFFSYFDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRL
                     GEEAARAALPEIKRKLAAYRY"
     gene            2972..3421
                     /locus_tag="ACFM5C_001524"
     CDS             2972..3421
                     /locus_tag="ACFM5C_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6069199.1"
                     /translation="MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQ
                     FPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGY
                     NVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD"
     gene            3495..3803
                     /locus_tag="ACFM5C_001525"
     CDS             3495..3803
                     /locus_tag="ACFM5C_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069200.1"
                     /translation="MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGA
                     SKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
                     "
     gene            3919..4761
                     /locus_tag="ACFM5C_001526"
     CDS             3919..4761
                     /locus_tag="ACFM5C_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HFC6069201.1"
                     /translation="MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWAR
                     KQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGG
                     HLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAV
                     AREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDT
                     HGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEC
                     RRAA"
     gene            4751..5497
                     /locus_tag="ACFM5C_001527"
     CDS             4751..5497
                     /locus_tag="ACFM5C_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HFC6069202.1"
                     /translation="MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHS
                     FIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILA
                     LMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLI
                     WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSG
                     WTEQRIIIPSLSAISENMEGNSPGQNHLSA"
     gene            5519..6106
                     /locus_tag="ACFM5C_001528"
     CDS             5519..6106
                     /locus_tag="ACFM5C_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HFC6069203.1"
                     /translation="MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSA
                     YSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQN
                     GHWTQEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
                     MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK"
     gene            6112..6291
                     /locus_tag="ACFM5C_001529"
     CDS             6112..6291
                     /locus_tag="ACFM5C_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HFC6069204.1"
                     /translation="MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQL
                     QTIKRSLAKTTRTSK"
     gene            6532..6972
                     /locus_tag="ACFM5C_001530"
     CDS             6532..6972
                     /locus_tag="ACFM5C_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6069205.1"
                     /translation="MIKETLMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNI
                     HTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSS
                     LQLFDTKNTEISTQSYTASSLRPMSILSGTLTEKQYETVCGKKL"
BASE COUNT         1827 a         1904 c         1636 g         1797 t
ORIGIN      
        1 ggtttttgtt aatccactat aaaaacacaa cctaaataaa aatgccgtct gaaccatatt
       61 tcaggtttca gacggcattt gcgtgtcgga tgcacaccgg acgggcggta agccgggttc
      121 tgtctcggac agtcattcct ctaggcatac cgttaccggt atgctcaagc aacctacccg
      181 aacgctcggc gggcagcgtc attgcgttct gtttggtctt gctccgaatg gggtttggcc
      241 tgccgcatat tgttaccaaa tgcgcggtgc gcccttaccg caccttttca cccttgcctg
      301 tgctgccaaa gcagccatcg gcggttttgc tttctgttcc actttccgtc gcgttaccgc
      361 gcccggccgt taaccggcat tctaccctgc ggagcccgga ctttcctccc cgtatgcctt
      421 acgcgatacg cggcgactgt ctgcccgtcc cgtgtgcggc gcggattata acacgaaacg
      481 caaaaatgcc gtctgaaacg gtacaggttt cagacggcat acggttcaaa ctacacgccc
      541 tgtttcaggc tggcttcgat aaagccgtcc aaatcgccat ccaatacggc tttggtgttg
      601 ccgacttcgt agcctgtacg caagtctttg atacgtgagg aatccaaaac atacgaacgg
      661 atttggctgc cccaacctac atcggattta ccttcttcca acgcctgttt ctcttcgttg
      721 cgtttgcgca tttccaattc atacagtttg gatttcaaca tttccatcgc ggccgctttg
      781 ttggcgtgtt gcgaacggtc gttttgacat tgcaccacaa tccccgtcgg ctcgtgggta
      841 atacgcacgg cggagtcggt tttgttgatg tgctgaccgc ccgcgcccga tgcgcgatag
      901 gtgtcgatac gcaaatcggc ggggttgatt tcgatttcaa tggaatcatc gatttcaggg
      961 taaacgaaca cggaggcaaa cgaagtatgg cgtttgttgt tcgagtcaaa cggtgaatag
     1021 cgcaccaagc ggtgaacgcc ggtttcggta cgcagcaaac cataggcgta ttcgccttcc
     1081 actcggatag tcgcgcggtt gatgcccgcg atttcgccgt cgtcttcttc gaggatttcg
     1141 attttgaagc ctttgcgctc ggcgtagcgg ctgtacatac ggaacagcat acccgcccag
     1201 tcttccgctt ccgtaccgcc cgcgcctgcg gtgatgtcga taaagcagtt gttcgggtcg
     1261 gcgggctggt tgaacatccg tttgaactcc aaatccgcca tctgtttttc cagccccgcc
     1321 acatcttcct gcacggcggc aaaaccttct tcgtcgtttt cttcgacggt catttcaatc
     1381 agcatgcggt tgtcttcgat gcccgtcgcg atgttgtcga gcgtcaacac gatgccttcg
     1441 aggattttgc gctctttgcc gatttcttgg gcgcgtttcg ggtcgttcca aagttcgggg
     1501 tcttcggaaa gaccgacaac ttcttccaat cggtctttct tgccctgata atccatataa
     1561 acgcggatgt cttcgctgcg cttttccaaa tcattcaggg tattgttgag ctggttgatt
     1621 acttcggctt ccatgattct tttgttcttt caaaatttta ggggcgtatt gtacgggatt
     1681 cgggtatttt tttctatgga taaagccttc tggaaacacg ttcggacggc atagcgtcaa
     1741 taacggtatg ccgccagttt gcgtttgatt tcaggcaatg cggcacgtgc tgcctcctca
     1801 cccaaccgga tggcgcgttt tttctgatcg aatccgccga ctgcacccaa atccaaaacc
     1861 tgcggtttga taaccacatc cgcctgcccc aactcatttt gcaacgcgga aacgctcatt
     1921 acgttcagcg tctgatcgaa ataagagaag aaaccttggc tgatgttttt gcccggacgg
     1981 gcggaaatat cgacggcaat cacgaaattc gccccctgcc gccgggcggc actgacgggc
     2041 acgggctgcg acagaccgcc gtcaacatat gtatgcctgc cgatgataac gggttggaac
     2101 acattgggaa tggcggcgga agcgcgcaca gcctgcccgg cattcccttg attgaaagcg
     2161 acggccttgc cggtttcaaa atcagtagca acagcggcaa atttgatggg aaactgctga
     2221 atccgcctgc cgccgacttt tcggttgatg taattttgca gcttttcgcc tttgataaaa
     2281 ccactggtgg acaaggttaa atcgactaaa tcggttttgc ctaaaatttc ggcttccaat
     2341 tcgaggcggt cgggcgacat acccgatgca aaaaggctgc cgactatcga acctgccgat
     2401 gtgccggtaa ccaccttcac aggaatacca ttttctttca aaaccttaat aatgcctaca
     2461 tgggcaaatc ctttagatgc gccgccaccg agtgccaaac cgaccactgc ggcgggtttg
     2521 gcggtttgca ccggcttgcg ggcagcatta tttcccgccg tgccgcaggc ggcaagcaac
     2581 gcggcggcgg cgattgccaa aagcggtctg atttttgaaa acgttaccat attttccatt
     2641 cctttatata tcgcaccccg tcaaaaagag ggattgcttt tcttaacaac cccctttgac
     2701 agccaagcaa atgggggctt tgttaagtca tcatcaaaat taatatttct ttttttcctt
     2761 tacggaaatt atatttgaag gcatactatc caaggcggga attatctcac aacaccgccg
     2821 ttatccaaat atcccgcctt tttcccttcc tttccatcaa aatactttct ttttatattc
     2881 attaacttgt taaatcattg gctgccgggt gtcagttttt ccgacaaaat ccgtctaatg
     2941 gggtatcaac agaaccaaaa caggaacact tatgaaaatc ggaacaactt ggcagacggc
     3001 atccgctatg ctggttttgc gtctgtttgc cgcatatgaa tttttggaat cgggtttgca
     3061 aaaatggaac ggggagaatt ggttttctga aatcaacgat caattcccat tcccgttcaa
     3121 cttgctgccg gacgcgttaa actggaatct cgccatgtat gcggagcttt tgctgcccgt
     3181 actgttgctt ttgggtttgg caacgcgtct gtcggcatta gggctgatgg tcgttaccgc
     3241 cgtcgcttgg gctgcggttc acgccggttc gggttacaat gtctgcgaca acggttataa
     3301 aatggcttta atttatatcg tggtattaat cccgctgctt ttccagggtg cgggcggatg
     3361 gtcgctggat acgctgctga aaaaacggtt ttgcccccaa tgccgtctga agcaagattg
     3421 attcagtcgt ggaatctgac tttaaacatt ccaaccttat ctcgttaact tgatattctg
     3481 aaaaggaaat agaaatgaac aaaaacattg ctgccgcact cgccggtgct ttatccctgt
     3541 ctttggccgc cggtgcagtt gctgccaaca aaccggcaag caacgcaaca ggcgttcata
     3601 aatccgccca tggctcttgc ggcgcgtcca aatctgccga aggttcgtgc ggcgcggctg
     3661 gttctaaagc aggcgaaggc aaatgcggcg agggcaaatg cggtgcgacc gtaaaaaaaa
     3721 cccacaaaca caccaaagca tctaaagcca aggccaaatc tgccgaaggc aaatgcggcg
     3781 aaggcaaatg cggttctaaa taatcccacc ccttcaaacc aagccgcgtt tttcagtaaa
     3841 atgcggcttt tttaacggca aacaaagatt ttttaacaag cacatcattc ttttgtgcca
     3901 tccgaaccgg gtaaaaatat gattcaacac gcaggcttgg gctaccgccg cgacttggcg
     3961 gaagactttc tctcgctttc cgaaaacagc ccgatatgct ttatcgaagc cgcaccggaa
     4021 aactggctga aaatgggcgg ctgggcgcgc aaacagtttg accgtgtggc ggaacggctg
     4081 ccgctggcgt tgcacggatt gtctatgtcg ctgggcgggc aagcaccgct ggatactgat
     4141 ttgatagacg gcatcaaaga aatgatgcgc cgttacgatt gcacgttttt ctccgaccat
     4201 ttgagctact gccacgacgg cggtcatctt tacgatttgt tgccgctgcc cttcaccgag
     4261 gaaatggtgc atcatacggc gcggcgtatc cgtgaagtgc aagaccgttt gggctgccgc
     4321 atcgccgtgg aaaacacgtc ctactatctg cattccccgc ttgccgagat gaacgaggtc
     4381 gagttcctca acgccgtcgc acgtgaggcc gattgcggca ttcatctgga tgtgaacaat
     4441 atctacgtca acgccgtcaa tcacggcctg ttgtcgccgg aggctttttt gaaaaacgtt
     4501 gacgcagatc gcgtgtgcta tatccatatt gccggacatg acgtggaaac gccggaattg
     4561 ttgattgata cacatggcgc ggcagttttg ccgactgttt gggacttgct cgaacttgcc
     4621 tatgccaagc tgccgacgat tccgcccacc ctgttggaac gcgattttaa tttcccgcct
     4681 tttgccgaac tcgaagccga agtcgccaaa atcgccgatt atcaaacgcg tgccggaaag
     4741 gaatgccgcc gtgcagcctg aaacctccgc ccaataccag caccgtttcg cccaagccat
     4801 acgcgggggc gaagccgcag acggtctgcc gcaagaccga ctgaacgtct atatccgcct
     4861 gatacgcaac aatatccaca gctttatcga ccgctgctat accgaaacgc ggcaatactt
     4921 tgacagcgaa gaatggagcc gtctgaaaga aggtttcgtc cgcgacgcgc acgcccaaac
     4981 gccctatttt caagaaatcc ccggcgagtt cctacaatat tgccaaagcc tgccgctttc
     5041 agacggcatt ttggcactga tggattttga atatacccaa ttactggcag aagttgcaca
     5101 aattccggat attcccgaca ttcattattc aaatcacagc aaatacacgc cctcccctgc
     5161 ggcctttatc cggcaatatc gatatgatgt taccgatgat ttgcaggaag cggaaacagc
     5221 cttgttaata tggcgaaacg ccgaagatga tgtgatgtac caaacattgg acggcttcga
     5281 tatgatgctg ctggagataa tgggttcctc cgcgctttcg tttgacaccc tcgcccaaac
     5341 ccttgtcgaa tttatgcctg aggacgataa ttggaaaaat attttgcttg ggaaatggtc
     5401 aggctggact gaacaaagga ttatcatccc ctccttgtcc gccatatccg aaaatatgga
     5461 aggcaattcc ccgggccaaa accatctatc cgcataaaat taccttgttc ccgatactat
     5521 gccgctaccc gacctgaccg atgccgaatt aatagagtcg cgtaaactgc ttctgcattt
     5581 tgcgcggctt cagttgcccg accaccctga tttggctgaa gatttagtgc aggaaacatt
     5641 gctgtccgca tacagcgcag gcgacagttt tcaaggcagg gcacttgtca acagctggct
     5701 ttttgccata ttgaaaaaca aaattattga cgcattacgt caaatcggaa ggcagaggaa
     5761 agtctttacc acactggatg acgagctact ggatgaagca tttgaaagcc atttttccca
     5821 aaacgggcat tggacgcagg aagggcagcc gcaacattgg aacactccgg aaaaatcatt
     5881 aaacaacaac gaattccaaa aaattctgca aagctgccta tacaacctgc ctgaaaacac
     5941 cgcacgggta tttaccctga aggaaatact cggtttttca tccgacgaaa tacaacaaat
     6001 gtgcggtatc agcacgtcca actaccacac cattatgcac cgcgcccgag aatcattgcg
     6061 ccaatgcctg caaatcaaat ggttcaacca agaaaacccg aagtaaacgt tatgaaaaaa
     6121 tgccgcgata tcgccctgct tctttccaaa catcaggacc gggaaaccac cccgggcgag
     6181 aagatttcca tatacacaca cctgctgttc tgtccgtatt gccgtgaata taaaagacaa
     6241 cttcaaacca tcaaaagatc actggcaaaa acaaccagaa cttcaaaata aatgccgtct
     6301 gaaaaggctt cagacggcat aagctgacgg aaacaaatca aaccgattta ctgttatctg
     6361 cagttcatcc ataatacaca cttcaaaagc agcatatttc cccatacgga atgtataaat
     6421 acgcaaaata cgaaggctgc atcaatttgc catatttgct ttatttgcct tatttcacag
     6481 acgacactcc ccctcccgcc caacccgttc tttctgaatg agcagatttc aatgattaag
     6541 gaaaccctaa tgcgcccaat cttcctatct ttcgttttac tccctatttt gataaccgcc
     6601 tgcagcacac cggacaagtc tgcccgatgg gaaaatatcg gcacaatctc aaacggcaat
     6661 attcatacat atatcaacaa agacagcgtg agaaaaaacg gaaatctgat gattttccaa
     6721 gataaaaaag ttgtgaccaa tctaaaacaa gaacgttttg ccaacacccc cgcatacaag
     6781 actgccattg ccgagtggga aatccactgc aacaacaaaa cataccgctt aagttcgcta
     6841 cagttgtttg atacaaaaaa cacggaaatt tccacacaaa gctacacagc ctcttccctc
     6901 cgcccgatga gcatcctgtc cggaacatta actgaaaaac aatatgaaac cgtatgcggg
     6961 aaaaaactct gattacaact tatgcacaaa cttatccata aaccttatta taaaaatgcc
     7021 gtctgaaata ctgaaatatc agcatttcgg acggcatttt gccatttccc cgaaaagtta
     7081 cccccaaagt tatccacatt attttttaaa ccagcttcca tccgaaatat agtggattaa
     7141 caaaaatcaa gacaaggcga cgaa
//
LOCUS       DAXHNP010000106         7147 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.106, whole genome shotgun sequence.
ACCESSION   DAXHNP010000106 DAXHNP010000000
VERSION     DAXHNP010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7147
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.106"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            152..1090
                     /locus_tag="ACFM5C_001531"
     CDS             152..1090
                     /locus_tag="ACFM5C_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HFC6069206.1"
                     /translation="MSIHTLKRLPSSLLLGLCLSLPSAHLFADNDILGQFLEQNMLTS
                     SDPIEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISK
                     LMSAMVVLDANLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRA
                     THALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQNVSTAKDLSLMVNAAA
                     QYPQIRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKA
                     NIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS"
     gene            1219..1512
                     /gene="hfq"
                     /locus_tag="ACFM5C_001532"
     CDS             1219..1512
                     /gene="hfq"
                     /locus_tag="ACFM5C_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HFC6069207.1"
                     /translation="MTAKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYV
                     VLLRNTSVTQMVYKHAISTIVPARSVNLQHENRPQAAPASTLVQVETVQQPAE"
     gene            1596..2162
                     /locus_tag="ACFM5C_001533"
     CDS             1596..2162
                     /locus_tag="ACFM5C_001533"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6069208.1"
                     /translation="MLLKNILPFAHCLLRQALPEGGNALDGTAGNGHDTLFLAQTAGI
                     RGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILDGHENLKQYIPKPLDAAIFNFGWLP
                     GGDKSLTTRTETSIAALSATLSLLKENGMLIAVLYPGHENGKQEAEAVGQWAKNLPQE
                     QFAVLRYGFTNRKNSPPYLLAFEKLRQK"
     gene            2216..2590
                     /locus_tag="ACFM5C_001534"
     CDS             2216..2590
                     /locus_tag="ACFM5C_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HFC6069209.1"
                     /translation="MQYLFVKYSHQIFVTITILVFNIRFFLLWKNPEKPLAGFWKALP
                     HLNDTMLLFTGLWLMKITHFSPFNAPWLGTKILLLLAYIALGMMMMRARPRSTKFYTV
                     YLLAMCCVACIVYLAKTKVLPF"
     gene            2600..3094
                     /gene="folK"
                     /locus_tag="ACFM5C_001535"
     CDS             2600..3094
                     /gene="folK"
                     /locus_tag="ACFM5C_001535"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFC6069210.1"
                     /translation="MNNRHFAVIALGSNLENPAQQVRAALDTLSSHPDIRLKQASSLY
                     MTAPVGYDNQPDFVNAVCTVSTTLDGIALLAELNRIEADFGRERSFRNAPRTLDLDII
                     DFDGISSDDTRLTLPHPRAHERSFVIRPLAEILPDFVLGKHGKVAELSKRLGNQGIRL
                     LPDR"
     gene            complement(3222..3701)
                     /locus_tag="ACFM5C_001536"
     CDS             complement(3222..3701)
                     /locus_tag="ACFM5C_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFC6069211.1"
                     /translation="MPESIFKQISLDILKLHRDSVYSLLATSGCNCQVHEAAYVNIDG
                     KYYIALSCEPEVGEVKTGILLIEDESRNLRLSWVGSARELDRKDSVYKRALSALSRKL
                     GRCKDRLHTAVQPFLLELVPEKGRFSVGDEEVWISRNDLVRALYPVGYSMRQAVLQI"
     gene            complement(3921..4658)
                     /gene="ubiE"
                     /locus_tag="ACFM5C_001537"
     CDS             complement(3921..4658)
                     /gene="ubiE"
                     /locus_tag="ACFM5C_001537"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFC6069212.1"
                     /translation="MGGQKTHFGFSTVNEDEKAGKVAEVFHSVAKNYDIMNDVMSAGL
                     HRVWKHFTINTAHLKKGDKVLDIAGGTGDLSRGWAKRVGKEGEVWLTDINSSMLTVGR
                     DRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGT
                     LLVLEFSKIYKPLEGAYDFYSFKLLPVMGKLIAKDAESYQYLAESIRMHPDQETLKQM
                     MLDAGFDSVDYHNMSAGIVALHKGVKF"
     gene            complement(4701..5069)
                     /locus_tag="ACFM5C_001538"
     CDS             complement(4701..5069)
                     /locus_tag="ACFM5C_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HFC6069213.1"
                     /translation="MNNIPVEIRLLKNRTVLVLTYGDEPKNLPAEFLRVYSPSAEVRG
                     HGVGQDVLQTGKADVQIADLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQ
                     EYLDKLAAAGASRFEKQSDC"
     gene            5189..6808
                     /gene="mnmC"
                     /locus_tag="ACFM5C_001539"
     CDS             5189..6808
                     /gene="mnmC"
                     /locus_tag="ACFM5C_001539"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFC6069214.1"
                     /translation="MDNLVWDGVPDIRTLDQTIRKHAHPLNLIVCLPDNQIPDFQTAQ
                     DASDAECRLKHRLDQATQCLQFDSINLIEHILPDVRFWLVPPSRTRRLHEHFHHISWQ
                     TEAIPQTESKPDKPWFALPQTSERQKPEHILVIGAGISGAATAHALASHGISVTVLEA
                     RKAAQAASGNRQGLLYAKISPHDTEQTELLLAGYGYTKRLLGHILPESETWGGNGIIH
                     LNYSRTEQQRNHELGLQKHHNHLYRSITQAEAEKIAGIPLNTPYAEPLCGLFWQHGVW
                     LNLPAFVRALLRHPLIGLHEDTPLTGISHDGEKWIASTPNGIFSATHIVYCTGAHSPC
                     LPEINLAALPLRQIRGQTGLTPSTPFSEQLRCAVSGESYISPSWHGLHCYGASFIPNS
                     SHTGWNEAEEASNRQALAHLNPALAESLFAANPNPQKYQGHAAIRCDSPDHLPLVGAL
                     GDIAAMRQTYTKLALDKNYRIDTPCPYLPNAYVNTAHGTRGLATAPICAAAVAAEILG
                     LPHPLSKRLRHALHPNRTIIRAIVRRKDLTP"
     gene            complement(6922..7039)
                     /locus_tag="ACFM5C_001540"
                     /pseudo
     CDS             complement(6922..7039)
                     /locus_tag="ACFM5C_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
BASE COUNT         1901 a         2233 c         1450 g         1563 t
ORIGIN      
        1 ttccgattta aaaacagaat gttataaaac ccaatcccca aaacacaaca agaccgcccg
       61 cctacgggca gtctcctgtc agacgacata ctttacagat ggctgttttt tcaacaaaat
      121 aacgccaata ctcaaaaata tggaatcaaa aatgtccatc catactctga aacgcctgcc
      181 ctcatcgctg ctgctcggtc tctgcctttc cctgccgtca gcccaccttt ttgccgacaa
      241 cgacatttta gggcaatttt tagaacagaa catgcttacc tcctccgatc cgatagaaat
      301 attcgccgaa agcacgatac accccaccaa cacccaagcc attacaggcg gtctgattct
      361 ctcctcacag tctgccctgg tcgtcaacaa caaaaccgga cagatactgt atcagaaaaa
      421 cgccgacagg attatgccca tcgcctccat ttccaaactg atgagcgcga tggtcgtttt
      481 ggatgcaaac ttggacatga acgaaaccgt taccattacg cccgacgaaa tcgaccgcat
      541 caaagggacc ggcagccgtc ttgccatagg tacggcactt acacgcaaag aactgctgca
      601 cctgagcctg atgagcagcg aaaaccgcgc cacccatgca ttgggcagaa cctaccccgg
      661 cggcatgggc gcatttgtcg ccgccatgaa ccgcaaagcc caaagcctcg gtatgtacgg
      721 cagccgcttt tacgaaccga ccggactcaa cttccaaaac gtttctaccg ccaaagacct
      781 gagccttatg gtcaacgccg ccgcccaata tccgcaaatc cgcaccaact cgacttccaa
      841 ctacgcctcg gtacagacca aaaacgggca gcagaactac aaaaactcca atgccctggt
      901 cagagaaggc atgtggaaca tcgaattgca gaaaaccggc tacatacgcg aagcaggcag
      961 gtctatggtt gtcaaagcca acattcaaaa tcaacccgtt accatcgtat tgctgaactc
     1021 gcccacatcc gccacacgcg tcaacgacgc ccgcaaaatc gaatcgtgga tgctgcagca
     1081 acgctcctga catacaaatg cccggcggaa aaccgcccaa acacaaaaaa aattggtaat
     1141 ttttcctatt caaggctaca attcgacacg cacagggcgt ctgcccgatt tcacaatcat
     1201 aataacggag ttaaaaatat gacagctaaa ggacaaatgt tgcaagatcc cttcctgaac
     1261 gccctgcgta aagagcacgt tccggtttcg atttacctgg tcaacggcat caaactgcaa
     1321 ggtcaggttg aatctttcga ccaatacgtc gttcttctga gaaacacttc cgtaacccaa
     1381 atggtttaca aacacgccat ttccaccatc gtaccggctc gctccgtcaa cctccaacac
     1441 gaaaacagac cccaagccgc accggcttcg acccttgtcc aagtggaaac cgtccagcag
     1501 cctgccgaat aatccgcgcg aagcatgacg tgtcatatct ttcaatacct taccgacatc
     1561 ggtaaggtat ttttattttc agacagcatt taaaaatgtt attgaaaaac atccttccat
     1621 tcgcccattg ccttttgcgg caggcacttc ccgaaggcgg caatgcgctg gacggcaccg
     1681 ccggcaacgg acacgacacc cttttcctcg cacaaaccgc aggcatccgg gggaaagtgt
     1741 gggcattcga catccagccg caagccctga acaacacccg atgccgtctg caggaagcag
     1801 gttacagcaa tgtacggttc atcttggacg gacatgaaaa cctgaagcaa tatattccaa
     1861 agccgctgga tgcagccatt ttcaatttcg gctggctgcc cggcggggac aaaagcctta
     1921 ccacccgcac ggaaaccagc attgccgccc tttctgccac cttatcccta ctgaaagaaa
     1981 acggtatgct tattgccgtc ctctatccgg gacacgaaaa cggcaaacag gaggcagaag
     2041 ccgtcggaca atgggcaaaa aacctgcctc aagaacagtt tgccgtttta cgttacggct
     2101 ttaccaaccg gaaaaacagc ccaccctatc tgttggcatt tgaaaaactg cgtcaaaaat
     2161 aactgtttgc ggtaaaataa gccgattcca acccttattt tgataagagc cgaccatgca
     2221 gtatctgttt gtcaaataca gccaccaaat cttcgttacc atcaccattt tggtattcaa
     2281 catccgtttt ttcctacttt ggaaaaatcc agaaaagccc ttggcgggct tttggaaggc
     2341 actgccacac cttaacgaca ccatgctgct gtttacggga ttgtggctga tgaaaattac
     2401 ccatttctcc ccgttcaacg cgccttggct cggtacaaaa atcctgcttc tgctcgccta
     2461 tatcgcattg ggtatgatga tgatgcgcgc ccgtccgcgt tcgaccaagt tctacaccgt
     2521 ttacctgctc gccatgtgtt gcgtcgcctg catcgtttac cttgccaaaa ccaaagtcct
     2581 gcctttctga aacaccgtta tgaacaacag acattttgcc gtcatcgccc tgggcagtaa
     2641 tcttgaaaac cctgcccaac aggtacgcgc cgcattggac acgctgtcgt cccatcctga
     2701 catccgtctt aaacaggctt cctcactgta tatgaccgcg cccgtcggtt acgacaatca
     2761 gcccgatttt gtcaatgccg tctgcaccgt ttccaccact ctggacggca ttgccctgct
     2821 tgccgaactc aaccgtatcg aggctgattt cggacgcgaa cgcagcttcc gcaacgcgcc
     2881 gcgcacattg gatttggaca ttatcgactt tgacggcatc tccagcgacg acacccgact
     2941 caccctgccg catccgcgcg cgcacgaacg cagtttcgtc atccgccctt tggcagaaat
     3001 cctccctgat tttgttttag gaaaacacgg aaaggttgcc gaattgtcaa aacggctggg
     3061 caatcaaggt atccgtcttt tacccgacag gtaattccgc acgcggatgc cgtctgaatg
     3121 ccggtttcag acggcatttt taccctgccg ccaatctgta cgcaaaaaaa atcgcccctt
     3181 gaaaaagggg cgcaaaagga acacaaacca ctaccaaaac tttaaatctg caacactgcc
     3241 tgccgcatac tgtatccgac aggatataaa gccctcacta aatcgtttcg agaaatccaa
     3301 acttcttcat cgccgacaga aaatctgcct ttctccggca ccagctccaa caaaaacggt
     3361 tgaaccgccg tatgcagcct gtccttacac cgccccagct ttctggacaa cgcggacaag
     3421 gcacgcttat agacactatc cttgcggtca agttcccgcg cactgccgac ccagctcaaa
     3481 cgaaggttgc ggctttcatc ctcaatcagc aaaatgcctg ttttgacttc ccccacctcg
     3541 ggctcacatg aaagcgcaat ataatatttg ccgtcgatgt tgacatacgc cgcttcatgc
     3601 acctgacagt tgcagccgga agtggcaagc agcgaataaa cagagtcccg atgcagtttc
     3661 aaaatatcaa gggaaatctg tttgaaaata ctttccggca tttttccctc ctttcgtctg
     3721 ctgcgttgtt tactggattg actgcattat acagacatct cccaatcttg caaatgataa
     3781 ttgttcctat tttttaaaaa atttataaat tattgatgga tatgtgaatt aattttaaga
     3841 tttaaaatct ctttctcaaa aaaacacaaa aatgccgtct gaaacgtgtt cagacggcat
     3901 tggctgcaca gccagtccgt ttaaaatttc acgcccttat gcagcgcgac gatgcccgca
     3961 ctcatattgt gataatccac gctgtcaaag cccgcatcca gcatcatctg tttcaaagtt
     4021 tcctgatcgg ggtgcatacg gatggattcg gcgagatatt gataactctc cgcatctttg
     4081 gcaatcagtt tgcccatgac cggcagcagc ttgaacgaat agaaatcata cgcgccttcc
     4141 aaaggtttgt agattttgga aaactccaat accagcaatg tcccgccggg tttcaaaaca
     4201 cggtacatct ctttcagcgc ggcatcttta tgcgtcatat tccgcaaacc gaacgccacg
     4261 gaaaccaagt tgaaataatt gtcagggaaa ggcagttttt ccgcatcggc aagcgacacg
     4321 ggcaaaatca tgccttcgtt caaaagacgg tcgcgcccga cggtcagcat agaggaatta
     4381 atatcggtca gccaaacctc gccttccttg ccgacccgtt tcgcccaacc gcgcgacaaa
     4441 tcgcccgtac cgccggcaat gtccaacact ttatcgcctt ttttcaggtg cgccgtgttg
     4501 atggtgaaat gcttccacac cctgtgcagc cctgccgaca tcacatcgtt cataatgtcg
     4561 tagtttttgg cgacggagtg gaacacttcc gccacttttc cggctttctc atcttcgttg
     4621 accgtactga atccgaaatg cgttttctgt ccgcccatat tctaaccacc tccctgatgc
     4681 cgccctacgg catcccaaac ttaacaatct gattgctttt caaaacggga agcacccgcc
     4741 gccgccaatt tgtccaaata ttcctgccac atcgcatcgt atccgtatgc cagtctgtgc
     4801 agatacgccc aatcgtaaag accgctgtcg tgcccgtctg aaaaactgat tttcagcgcg
     4861 tactgtccga caggctgcaa atccgcgatt tggacatccg ccttgccggt ctgcaaaaca
     4921 tcctgtccca cgccgtgtcc gcgcacttcc gcactcggcg aatagacgcg taaaaattcg
     4981 gcaggcagat ttttaggttc gtccccataa gtcaaaacca acacggtacg gtttttcaac
     5041 aaacggattt caacaggaat attattcaaa aaacacctcg gttcggcata caatatccgg
     5101 caggcgcagg cgtgccttca aacggcgcgt attttaacag ctttatcccg ataccgatat
     5161 tcaaacccac actttaaacg gcattgatat ggacaatctc gtatgggacg gcgttcccga
     5221 catccgcaca ctcgaccaaa ccatccgcaa acacgcacac ccgctcaacc tgattgtctg
     5281 cctccccgat aatcagattc ccgattttca aaccgcacaa gatgcttcgg acgcggaatg
     5341 ccgtctgaag caccgtttgg atcaggcaac gcagtgcctc cagttcgaca gcatcaacct
     5401 catcgaacac atcctgcccg atgtccgctt ctggctggtt cccccttcac gcacccgccg
     5461 cctgcacgaa cacttccacc acatttcctg gcagaccgaa gccatcccgc aaaccgaaag
     5521 caaacccgac aaaccctggt ttgcacttcc acaaacatcc gaacggcaaa aaccggaaca
     5581 catcctcgtt atcggcgcgg gcatatccgg cgcggcaacc gcccacgcct tagcatcaca
     5641 cggcatttcc gttaccgtat tggaagcccg aaaagccgcc caagccgcca gcggcaaccg
     5701 ccaagggctg ctctacgcca aaatctcgcc gcacgacacc gaacaaaccg aactgctgct
     5761 tgccggctac ggctacacca aacgcctgct cggacacatc ctgcccgaat ccgaaacctg
     5821 gggcggcaac ggcatcatcc acctcaatta cagccgcacc gaacaacaac gcaatcacga
     5881 attgggtttg caaaaacacc ataaccacct ctaccgcagc atcacgcagg cagaagccga
     5941 aaaaatcgcc ggtatcccgc tgaacacgcc ctacgccgaa ccattatgcg gactgttttg
     6001 gcagcacggc gtatggctca atctacccgc attcgtccgc gccctcctcc gccatccgct
     6061 gattggacta cacgaagaca caccgttaac cggtatttcc cacgacggag aaaagtggat
     6121 tgcaagcacg ccaaacggca tcttttctgc cacacacatc gtctactgca ccggcgcgca
     6181 cagcccctgc ctgcccgaaa tcaacctcgc cgccctgccc ctcaggcaaa tacgcggaca
     6241 aaccggcctc acaccgtcca ccccgttttc cgaacaactg cgttgcgccg tttcaggcga
     6301 aagctacatc agcccgtcgt ggcacggact gcactgctac ggcgcgagtt ttattcccaa
     6361 cagcagccat accggatgga acgaagccga agaagcctca aaccgccaag cattggcaca
     6421 ccttaacccc gcccttgccg aatcattgtt tgccgccaac ccaaaccccc aaaaatacca
     6481 agggcacgcc gccatacgct gcgacagccc cgaccacctt cccctagtcg gcgcactcgg
     6541 cgacattgcc gccatgcggc agacctacac caaactcgcg ctggacaaaa actaccgcat
     6601 cgacacccca tgcccatacc tgcctaatgc ctacgtcaac accgcccacg gcacacgcgg
     6661 gcttgccacc gcccccatct gcgccgccgc cgttgcagcc gaaatcctag gcttgcccca
     6721 tcccctctca aaacgcctgc gccacgccct acaccccaac cgcaccatca tccgcgccat
     6781 cgtcagaagg aaggatctaa ccccttaagc ctttgccgca tgccgtcccg accacagaaa
     6841 atcatattca aataaacata ccaatcctga cggtaaaata tcgaaaacac ccataacgtt
     6901 ttcttcccaa aataaggagt aaggaatgcc taacaaattg cctttgctgt ctaagatgaa
     6961 tgttccgtaa cattcgaaga cttccttaac cctgccagcc gtttcggttt ctgtaccccc
     7021 tgttagataa ggaaggaatg aaaaagccct gttgattgta tgaagtaaag ggcgttaatt
     7081 tttgttaatc ttcccttctc aggaactcaa tatataagga tgttaatttt tatttccctt
     7141 ctcgagg
//
LOCUS       DAXHNP010000107         7142 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.107, whole genome shotgun sequence.
ACCESSION   DAXHNP010000107 DAXHNP010000000
VERSION     DAXHNP010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7142
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.107"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            188..1372
                     /gene="ubiM"
                     /locus_tag="ACFM5C_001541"
     CDS             188..1372
                     /gene="ubiM"
                     /locus_tag="ACFM5C_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-demethoxyubiquinol-8 5-hydroxylase UbiM"
                     /protein_id="HFC6069215.1"
                     /translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
                     PYDGREIALTHFSREIMQRLGMWDKIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
                     EPADCLGYLISNHNIRRAAYEVVSQLDNITILTDTVVKEVKTSDNEAQVILENGKILT
                     ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNQHTAYECFHYGRTIAL
                     LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKARLGDMELVSSIHHYPLVG
                     MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGAASL
                     LEKYSSKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRASNNFPPLKKLITKQL
                     TG"
     gene            complement(1561..1716)
                     /gene="rpmG"
                     /locus_tag="ACFM5C_001542"
     CDS             complement(1561..1716)
                     /gene="rpmG"
                     /locus_tag="ACFM5C_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009766925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFC6069216.1"
                     /translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
                     YKETKLK"
     gene            complement(1748..1981)
                     /gene="rpmB"
                     /locus_tag="ACFM5C_001543"
     CDS             complement(1748..1981)
                     /gene="rpmB"
                     /locus_tag="ACFM5C_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFC6069217.1"
                     /translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
                     RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
     gene            complement(2231..3757)
                     /gene="farB"
                     /locus_tag="ACFM5C_001544"
     CDS             complement(2231..3757)
                     /gene="farB"
                     /locus_tag="ACFM5C_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     permease subunit FarB"
                     /protein_id="HFC6069218.1"
                     /translation="MDYPPLKGAALAWITLSLGLAVFMEVLDTTIANVAVPVIAGNLG
                     AATTQGTWVITSFAVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
                     ALVIFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
                     SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
                     LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
                     SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
                     LVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGAGVAMFFLPLTTITLSHMKGGQ
                     IAAAGSLSNFLRVLMGGVGVSFVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
                     HGVSDIQTAGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHSGGGGGH
                     "
     gene            complement(3781..4953)
                     /gene="farA"
                     /locus_tag="ACFM5C_001545"
     CDS             complement(3781..4953)
                     /gene="farA"
                     /locus_tag="ACFM5C_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     adaptor subunit FarA"
                     /protein_id="HFC6069219.1"
                     /translation="MATHADETTIQNRQEANSAKAKRKRCLTALTLLFALAAAAAGSA
                     FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVL
                     AYERAKNELIQAVRQNRRQNAATSQAGAQVALRRADLARAQDDLRRRSALAESGAVSA
                     EELAHARAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQ
                     RTQIRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPA
                     ELVSDLYGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDV
                     DRHPLRIGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
     gene            complement(4997..5356)
                     /locus_tag="ACFM5C_001546"
     CDS             complement(4997..5356)
                     /locus_tag="ACFM5C_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 8 family protein"
                     /protein_id="HFC6069220.1"
                     /translation="MINLELKAINLYDCAFEDFVPEIKDNFCVGIDLDIGTDDSDAAD
                     IFSVRICSPKWILHNCFQNQRVKWGAGMMIMNEFNHSVIKSEIEKILKECSKETWEKS
                     LTYLLRFFSWEFEDYQC"
     regulatory      5571..5615
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            5620..6093
                     /gene="queF"
                     /locus_tag="ACFM5C_001547"
     CDS             5620..6093
                     /gene="queF"
                     /locus_tag="ACFM5C_001547"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFC6069221.1"
                     /translation="MSRNNEELQGISLLGNQKTQYPTGYAPEILEAFDNKHPDNDYFV
                     KFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
                     IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFEALARKRLFEHDAQ"
     gene            6170..6856
                     /locus_tag="ACFM5C_001548"
     CDS             6170..6856
                     /locus_tag="ACFM5C_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HFC6069222.1"
                     /translation="MYAFTDAQQQKALFRLVLFHILIIAASNYLVQFPFQIFGIHTTW
                     GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALS
                     EFNTFVGRIALASFAAYALGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
                     VAFYASSDEFMAANWQGIAFVDYLFKLTVCGLFFLPAYGVILNLLTKKLTTLQTKQAQ
                     DRPAPSLQNP"
BASE COUNT         1828 a         2011 c         1592 g         1711 t
ORIGIN      
        1 ataccccaca cccgatttga tacacattaa gctgaaagta aaaatccgca tacaccctcc
       61 cctgcatatt tcttcaacag tgggttttga tataatcgcc tatctgttac agatagttca
      121 aacggcattc aaacccttac aaataccgtc tgaaatcatc ggcatccgtc tatgcaaagg
      181 atattttatg agtttacaca gcgacatcct cgtcgtcggc gcaggcccgg cgggtttaag
      241 ttttgcagcc gaacttgccg gcagcggttt gaaagttacc ctgatcgaac gcagcccact
      301 gactgttctg caaaatcctc catatgacgg acgcgaaatc gccctgaccc atttttcccg
      361 cgaaatcatg cagcgtttgg gtatgtggga caaaattccc gaaaacgaaa tctacccttt
      421 gcgcgatgcc aaagtgctga acggacgttc cgactaccag ctccactttc cccaaccgac
      481 tgaagcgcgc ggcgaacctg ccgactgttt gggctatctg atttccaacc acaatatccg
      541 acgcgctgcc tacgaagtcg tatcccaact cgacaacatt accattctga ccgatacggt
      601 tgtcaaagaa gtcaaaacat ctgacaacga agcacaagtc attttggaaa acggcaaaat
      661 cctgactgca cgcctgcttt tggcggcaga cagccgcttc tcgcaaaccc gtcgacaact
      721 cggtatctcc tccgatatgc acgattacag ccgaaccatg ttcgtctgcc gtatgaaaca
      781 taccctttcc aaccaacata ccgcttacga atgcttccat tacggacgca ccatcgcact
      841 gctgccgctg gaagagcacc tgaccaatac cgtcattacc gtcgataccg ataaaatcaa
      901 cagcgttcaa aacctttcgc ccgaagaatt ggcggcaagc gtaaaagaac agctcaaggc
      961 caggctcggc gatatggaac tggtcagcag catccaccat tacccccttg tcggtatgat
     1021 tgccaaacgt ttctacggca aacgcagcgc gctgatcggc gatgcggctg tcggtatgca
     1081 ccccgttacc gcacacggtt tcaacttggg tctgtccagc gcagatattt tggcaaaact
     1141 gatactcgaa gccgagcagc gcggtcagga catcggcgcg gcttccttgt tggaaaaata
     1201 cagcagcaaa catatgctgc acgcccatcc gctttatcac ggaaccaata tgatgctgaa
     1261 actgtttacc aatgagaccg caccggcaaa actgttgcgc ggcttggtat tgcgtgccag
     1321 caacaatttc ccaccgctga agaaactgat caccaaacaa ctgaccggtt gaaaactgcc
     1381 gaaatgccgt ctgaaacgtt tcagacggca tttttgtgtt atgaaccgtt ttgcggtttt
     1441 catatccttg gcagacggtt tgcagcagat tcgcatacgg cagatgtttc aagcagaaag
     1501 gaaacacgat aaaaataaaa aagcctccga acagtcggag gctttgcttt caaactgaaa
     1561 ttatttcagt ttggtttctt tgtacactac gtgtttgcgg gcaaccggat cgaatttttt
     1621 gatttccagt ttgccgggca tagtgcgttt gtttttggta gtggtgtaga agtgaccagt
     1681 acctgcactg gattccagtt tgattttatc gcgcattgca gtaatcctta attaaatagt
     1741 gtttaaatta agcttcaccg cgagcacgca aatcagccaa tacgacatca atgcctactt
     1801 tgtcgatggt acgcagagcg gcgttagaaa cgcgcaggcg aacccagcgg ttttcacttt
     1861 ctacccaaaa acgacgtgat tgcaagttag gcaaaaaacg acgtttggtt ttgttgttgg
     1921 cgtgtgatac gttgttgcca gacatcgggc gcttaccggt cactttgcaa actcgtgcca
     1981 tggtcagtct ccaaacttct aaaatagtaa aacgtgattt ataccacgaa aaacagtgtt
     2041 agttcaagtg ttttagagaa aaacggctgt tttacgcgaa ttatcctgcc gattgttgca
     2101 ttcgggaaac gtttgccgat acgaaacaga cggaatgcga ttatagcggg tttcacagat
     2161 gcctgcattc taaatactgt ccgaacatat ttccagtatt ttcagacggc atttcaagtt
     2221 ttcaaatccc tcaatgtcca ccaccgccgc cgctgtggaa cggcggtttt gccagccata
     2281 tgacaggaat catgatgatg aacagcaggc tgcccgccat aaagatttcg ttcgagccga
     2341 taatgaaacc ctgctgggta atggtattgt tgataatacc tgcggtttga atgtcggaaa
     2401 cgccgtgctg ggacaaatgg gcggccgttt catgcaatgt cgcggaatat ggcgtgatgt
     2461 gttcggcaaa gcgtgtatgg tgcaacgctt cacgccgttc ccacagggta ctaacgaatg
     2521 atacgccgac accgcccata agcacgcgca agaagttcga caagctgccg gcggcggcaa
     2581 tctgtccgcc cttcatgtgc gacagtgtga tggtggtcag cggcaggaag aacatggcaa
     2641 cgcctgcccc ctgccaaaac tgcggccaga tgacgttgcc gatatccatg tcggcataaa
     2701 aatcggtgcg ccaatagaaa gtgaaggcaa aggtcagaaa gctggcggtt acgagcaggc
     2761 gcatatcgat tttattgccg aacctgccga ttaacggaga caggaagaca gggaggatgc
     2821 cgacgggcgc ggcggcaagc cccgcccacg tggaggtata gcccaggttg gtctgcaaca
     2881 ctaacggcag cagggtcagc gtccccatat acaccataaa acccaatgac gtggcaatta
     2941 cgccgacggt aaaattccga tctttaaaca gcgataaatc gacaatcgga tatttttctc
     3001 ccaattccca aacaataaaa tacgacaaac acaccagtgc gactacgccc aaggtaatga
     3061 tttctccaga ggcgaaccag tcgagttcct tacccctgtc cagcatcatc tgtaacgcgc
     3121 cgataccgac taccatcaat gtaagcccga catagtcggt cggcatttta acggtttccg
     3181 tttcccgata tttcaaatgt ttccatgtaa tccatgccga tatgataccg atagggatat
     3241 taatgaagaa aatccaaccc caatgccagt ttccggaaat ccaaccgccg agtatcggcc
     3301 cgagaacagg ggcgacaacg acggtcattg cccacaatgc cagtgccagc gtccgttttg
     3361 cgggcggata ggatgccatt aacaggcttt gcgacagggg aatcagcggc ccggcgataa
     3421 agccctgcaa gatgcggaaa attaccaaag cctgaaggtt gggcgcgatg ccgcacagcc
     3481 acgatgtgat gacgaaaccg acagcggcgg cggtaaacaa tttgacctcg ccgatacgtt
     3541 ttgccaaaaa gcccgttaac ggcacggaaa cggcgtttgc cacagcaaaa gaagtaatga
     3601 cccacgtccc ctgagtggtt gccgcaccga ggttgccggc gataacggga acggcgacat
     3661 tggcgatagt cgtatctaaa acttccataa atacggcaag ccccaaagac agcgtaatcc
     3721 atgccaatgc cgcaccctta agcggtggat aatccattgt gtcctccgtt tcagacggca
     3781 tcagggcgcg gattgcccga ggatttcatc gaccgtccga tcgacttccg accagtcggt
     3841 actttccatt tccggcaatg ccgcacccgg cgtttttgaa acaggcgcgc ctgcggcgga
     3901 agtatccact ttaaccgtca tcgacaaacc gatacgcaac ggatgcctgt ccacatcttc
     3961 gcggttcagc acgatacgga cggggacgcg ctgcaccact ttaatccagt tgcccgttgc
     4021 gttttgcgcc ggaatcagcg aaaacgcgct gcccgtacct gccgaaaaac ctgccaccct
     4081 gccgcgataa acaatttgtt tgccgtacaa atcggacacc agctcggcag gctgtccgat
     4141 tttcatatgc cgcaactgcg tctctttaaa attagcatcc acccacacat ccgacagcgg
     4201 caccaccgcc atcagcggcg cgcctgccgc cacctgctgc ccgacctgca ccgaacgctt
     4261 cgccacctga ccgtccgccg gcgcgcggat ttgcgtccgc tgaaggttca accacgcatc
     4321 tttcaacctg ccgattgccg tctgaaccgc cggctgttcg cgcaaagaaa cctgaccgcc
     4381 caaagccgca cgcgccgaag attcttccgc caaagccgcc ttaactgccg cctgagcctg
     4441 agacactgcc gcacgggcat gtgccagctc ttcggcggac accgcgcccg attccgccaa
     4501 agcagaccgg cggcgcaaat catcctgcgc gcgtgccaaa tccgcccggc gcaaggcaac
     4561 ctgcgccccc gcctgcgaag tggcggcatt ttgccggcgg ttttgccgca ccgcctgaat
     4621 cagctcgttt tttgcccgct cgtaagccag cacatcatta tcgtcgtcca ataccgccag
     4681 cacgtcgcct tttttcacgg catccgtatc gtcgtgcaaa accttccgca ccgtaccgcc
     4741 cttttgcggc gtaacctgaa ccacgcgtcc ggcaacataa gcgtcttccg tttcctcttc
     4801 gtgctgccac cataaaaaaa acgccgaccc ggcggctgcg gcggcaagcg cgaacagcag
     4861 cgtcaatgcc gtcaggcagc gtttgcgttt ggcttttgcg ctattggctt cttgtctgtt
     4921 ttgaattgtc gtttcatctg catgtgttgc cattattcca attccaaata cttctaatac
     4981 tatgtttttg atttaattag cactgataat cttcaaattc ccacgaaaaa aaacgaagta
     5041 aataagtcaa tgacttttcc caagtttctt ttgaacattc tttaagaatt ttctcaattt
     5101 ccgatttaat aacagaatga ttaaattcat tcataatcat catacccgct ccccatttaa
     5161 ccctttgatt ttggaaacaa ttatgcaaaa tccatttagg agagcatatg cgaacagaaa
     5221 atatatctgc agcatcacta tcatcagttc ctatgtctaa atcaattccc acacaaaaat
     5281 tgtctttgat ttcgggaacg aaatcttcaa aggcacaatc gtaaagattg atggctttca
     5341 attctaggtt aatcatttta tattcaaaat aaataaaacc aattaaagat tggttaggat
     5401 tctataccct ggcaataact caatcaagtt aatgatttag aatgaatatt caaataaact
     5461 gtatcagccc ggcctcacag aactatttat atccacacat caccgagtaa agcaattacc
     5521 catactaacc gaagaaaact acacaaatac cgccacttat attacaatcg ccgcccgtgg
     5581 ttcgaaaacc tcccacatta aaaaactaag gaaaccctca tgtcccgcaa caacgaagag
     5641 ctgcaaggca tctctctttt gggcaatcaa aaaacccaat atccgaccgg ctacgcgcct
     5701 gaaattctcg aagcattcga caacaaacat cccgacaacg actatttcgt caaattcgtc
     5761 tgtcccgagt tcaccagcct ctgccccatg accgggcagc ccgacttcgc caccatctac
     5821 atccgctaca ttccgcacat caaaatggtg gaaagcaaat ccctgaaact ctacctcttc
     5881 agcttccgca accacggcga ttttcatgaa gactgcgtca acatcatcat gaaagacctc
     5941 attgccctga tggatccgaa atacatcgaa gtattcggcg agttcacacc gcgcggcggc
     6001 atcgccattc atcctttcgc caattacggc aaagcaggca ccgagtttga agcattggcg
     6061 cgtaaacgcc tgtttgagca cgacgcacaa taaaccatcc ttcccatatt tcagacggca
     6121 ttccttcgat acgatatgcc gtctgaacgc ctttccgaaa ggttttttta tgtacgcctt
     6181 taccgacgca cagcaacaga aggcactctt ccggctggtg ctttttcata tcctcatcat
     6241 cgccgccagc aactatctgg tgcagttccc cttccaaatt ttcggcatcc acaccacttg
     6301 gggcgcattt tcctttccct tcatcttcct tgccaccgac ctgaccgtcc gcattttcgg
     6361 ttcgcacttg gcacggcgga ttatcttttg ggtgatgttc cccgcccttt tgctttccta
     6421 cgtcttttcc gttttgttcc acaacggcag ttggacaggc ttgggcgcgc tgtccgaatt
     6481 caacaccttt gtcggacgca tcgccttagc cagctttgcc gcctatgcgc tcggacaaat
     6541 ccttgatatt tttgtattca acaaattacg ccgtctgaaa gcgtggtgga ttgccccaac
     6601 cgcatcaacc gtcatcggca acgccttgga tacgttggta tttttcgccg ttgccttcta
     6661 tgcaagcagc gatgaattta tggcggcaaa ctggcagggc atcgcttttg tcgattacct
     6721 gttcaaactc accgtctgcg gtctgttttt cctgcccgcc tacggcgtga ttctgaatct
     6781 gctgacgaaa aaactgacga ccctgcaaac caaacaggcg caagaccgcc ccgcgccctc
     6841 gctgcaaaat ccgtaacaca gccctgccgg gaatcgggac ggttgggttt tcttttattt
     6901 gcaaacactg tcggaacgga taaatccgga ttcctaccta cttcgtcatt cccgcgaaag
     6961 tgggaatccg gtgcgttggg tttccatcat ttccgataaa ctcctgccgc gttgtatttc
     7021 cagattcccg ctttcgcggg aatgacggcg gatgggtttc cgtaccgtgg tgtccggatt
     7081 cccgacggca cgggaatgac ggcagtgctt ccttggctta gttttatttt aatcgactgt
     7141 at
//
LOCUS       DAXHNP010000108         7133 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.108, whole genome shotgun sequence.
ACCESSION   DAXHNP010000108 DAXHNP010000000
VERSION     DAXHNP010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7133
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.108"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(16..771)
                     /locus_tag="ACFM5C_001549"
     CDS             complement(16..771)
                     /locus_tag="ACFM5C_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HFC6069223.1"
                     /translation="MKYVRLFFLGAALAGTQAAAAEMVQIEGGSYRPLYLKKDTGLIK
                     VKPFKLDKYPVTNAEFAEFVNSHPQWQKGRIGSKQAEPAYLKHWMKNGSRSYAPKAGE
                     LKQPVTNVSWFAANAYCAAQGKRLPTIDEWEFAGLASATQKNGSNEPGYNRTILDWYA
                     DGGRKGLHDVGKGRPNYWGVYDMHGLIWEWTEDFNSSLLSSGNANAQMFCSGASIGSS
                     DSSNYAAFLRYGIRTSLQSKYVLHNLGFRCTSR"
     gene            complement(896..2055)
                     /gene="nirK"
                     /locus_tag="ACFM5C_001550"
                     /pseudo
     CDS             complement(896..2055)
                     /gene="nirK"
                     /locus_tag="ACFM5C_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714409.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
     gene            2429..4684
                     /locus_tag="ACFM5C_001551"
                     /pseudo
     CDS             2429..4684
                     /locus_tag="ACFM5C_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582176.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
     gene            4863..5396
                     /locus_tag="ACFM5C_001552"
     CDS             4863..5396
                     /locus_tag="ACFM5C_001552"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HFC6069224.1"
                     /translation="MGIYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQYEAL
                     QKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANT
                     APLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERF
                     APSVTPEEIEADIRALL"
     gene            complement(5459..6643)
                     /locus_tag="ACFM5C_001553"
     CDS             complement(5459..6643)
                     /locus_tag="ACFM5C_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HFC6069225.1"
                     /translation="MTEPTSRRRFLKTCTAAAGAGLLQACGTSATSVPPLPSSHSVVK
                     ARTVPLQTPRRQSSDGNLLRVVASSGFAEDTNRVNTALTRLYNAGFTVTNQQAGSRRF
                     QRFAGTDAQRVADFQEVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMREHGT
                     LFFGFSDVCAVQLALLAKGNMMSFAGPMAYSDFGKPAPGAFTMDAFIKGATQNRLTVD
                     VPYIQRADVETEGILWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLNT
                     LYLSGILKKQRAIVFGNFRMEKIRDVYDPSYDFSAVANHVSRTAKIPVLTGFPFGHIA
                     DKITFPLGAHARIRMNGNSGYSVAFEGYPTLDASALTLDTLLPPPDLPIFPESGVADI
                     SE"
     gene            complement(6683..7087)
                     /locus_tag="ACFM5C_001554"
     CDS             complement(6683..7087)
                     /locus_tag="ACFM5C_001554"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFC6069226.1"
                     /translation="MTAQPCPICTAQDEDILLQTPKLRVIAVHNDSGSPAFCRVIWRK
                     HIAEMTDLSAAERGELMEMVYKVEAAMRQVFQPAKINLASLGNVVPHLHWHIIARFEN
                     DASFPAPIWANPVRKHGMTLPQDWTEQLKKLL"
BASE COUNT         1589 a         1749 c         1994 g         1801 t
ORIGIN      
        1 ctataattga aggggttatc ggcttgtgca acggaagccc aagttgtgca agacgtattt
       61 ggattgcagg ctggtgcgga tgccgtagcg gaggaaggcg gcatagttgg acgagtcgct
      121 cgacccgata gacgcgccgc tgcaaaacat ttgcgcgttg gcattgccgg aagaaagcag
      181 gctgctgttg aaatcttccg tccattccca aatcagcccg tgcatatcat aaacgcccca
      241 gtagttcggg cggcctttgc cgacatcgtg caggcctttc cgtccgccgt cggcatacca
      301 atcgagaata gtgcggttgt agccgggttc gtttgagccg tttttctgcg tggcggaagc
      361 aagtccggca aattcccatt cgtcaatggt cggcaggcgt ttgccttgtg cggcgcaata
      421 ggcgttggcg gcaaaccagg aaacatttgt taccggttgt tttaattcgc ccgccttcgg
      481 cgcatagctg cggctgccgt ttttcatcca atgcttcagg taagcgggtt ctgcctgttt
      541 ggaaccgatc ctgccttttt gccattgggg gtggctgttg acaaattcgg caaactcggc
      601 attggtaacg ggatatttat ccagtttgaa cggtttgact ttaatcaggc cggtatcttt
      661 tttcagataa agcgggcggt agctgccgcc ttcgatttga accatttcgg cagccgccgc
      721 ttgagtgccg gcgagtgccg cgccgaggaa aaataaccgg acatacttca taaagcctcc
      781 tgacaggcgg ttaaaatcaa tcttccgaaa ggaaagattg gttgttaaaa aaccactgcc
      841 gtgcgtaatg aagtacagcg gcagtggttc gtcccgctaa tgacgggtat ccaatttaat
      901 aaacgctttt ttcggatgca gaggctgccg gggcagaagc tgcgggagcg gaagcagcag
      961 gagctgcacc gttaccggcg taagcggtat cactcaattt ttgagtcatg atttcagggt
     1021 tttccgcacc ctctactttc aattggccca acgcgccttt gttgaatgcg cggaagatgg
     1081 agtggtcgac caaagtgtag ctgcccggga tgtcgacttt gaattcgacg atggcggaac
     1141 cgccggcagg aacgatggtg ctttgtacgt tttcgttaat cagcttgccg ccttccacat
     1201 aaactttgtc gaagatttcg ccgatgacgt ggaaggaaga cactaggttc ggaccgccgt
     1261 taccgacgta catacgcacg gtttcgcctg ctttggcttt cagcgcgtta tcgccggcga
     1321 tagaacctac atgaccgttg aatacgacgt attcaggctg ttcggcaacg gctttgtcca
     1381 tatcgaacgg ttgcaggcct tgcgcgcctt ttttgccttt ggtgtagaag tcgccttgga
     1441 cgatgtagaa ctctttatcc actttcggca gaccttcttt aggctcgacc aaaatcagac
     1501 cgtacatacc gttggcgatg tgcataccga ccggcgcgac ggcgcagtgg tagatgtaca
     1561 gacccggttg cagggctttg aagctgaatg tggaagtgcg gcccggggcg gtaaaggttg
     1621 cggctgcacc gccgccctga ccggttgcgg cgtggaagtc gacgttatgg ggaacggtag
     1681 aagacgggtt gttggaaaat tccacttcaa ccgtatcgcc ttcgcgtacg cggatcatgc
     1741 gacccggaac gtcgccgtca aatgtccagt agcggtattc cacaccgtct tccatggtca
     1801 tggtttttcg acagtttcca tttttacgcg gactttggca ggatagtcgc ggtcgattgc
     1861 gggaggtact tcaggagcgt gggtggtaac tgcatcgata acgggcagtt cgcctgtcgg
     1921 cgtttcggcg gcggtttgtg cggcggaact tgcggcttct gcggaagcgg caggggcttg
     1981 cgcggcaggt tcgccgccgc aggcggctaa tgcgaataag gaagcaatca ttgcagctaa
     2041 ggcttggcgt ttcataatgt tttccttttg taagaaaagt agaggaattg gttaagaact
     2101 tggtgtgatt atgcgtttgc cccattgggg gcattttgat ttaagtcaaa taattcataa
     2161 aatatgaact taaaatgata cttctaatac tttatagcta ctaaaaatta caatgaatag
     2221 gctgatttgc ttaagggctt cggcaaatca ggcaaaggca gggtagttgc cgactaaaga
     2281 aaatgatagt tattatcata tatgtatttg ttttatatgt gagtttcttt gaacaaatgt
     2341 ttatttgtgc gctaaaccgt gctacaatct ttaacattca tattctgtga attttaaaca
     2401 accactttta ccaaaaggag ctctaaaaat gggacagtac aagaagctat ggtacttgct
     2461 gtttgccgtt ctggcggtat gctttaccat tcttggctat atgggcagcg aggtttacaa
     2521 aaaagccccg ccttaccctg aacaggtcgt ttccgcatca ggcaaagtgc tgatgacgaa
     2581 agacgatatt ttggcaggtc agtctgcgtg gcagagtacc ggcggtatgg aagtcggttc
     2641 gattctgggt cacggcgcat atcaggctcc ggactggacg gccgactggc tgcatcgtga
     2701 gttggttgca tagttggatt tgaccgcgca acagacttac ggcaaaaaat tcgatgaagt
     2761 ttcccctgaa gaacaagccg ttctgaaaac ccgactggct gacgaatacc gcaaccaaag
     2821 ccgtattaaa gaagacggca gcgtcgtcat cagcgatacg cgcgtgaaag ccatcgaaag
     2881 catcctgcct tattaccacg gtgtttacgg cgatgatccc gcgctgcaaa ccacccgcga
     2941 acactttgca atgaaaaaca acacattgcc aagccaagaa gcgcgtgaaa aactgttcga
     3001 cttcttcttc tggacttctt ggtctgcttc gaccaaccgt cctgacgaga cgttcactta
     3061 taccaacaac tggccgcacg agcctttgat caacaacgta ccgaccactg aaaactatat
     3121 gtggtcattc accagcgttg ttcttctgct gatgggcatc ggtttgttga tgtggggtta
     3181 ttccttcctg accaaacacg aggaagtgga agtgccgtct gaagacccga tttccaaaat
     3241 ccaactgacc ccttcacaaa aagcattggg caaatacgtc ttcctgacgg ttgccctgtt
     3301 tgtggtacaa gtattgctgg gcggtctgac cgcgcactac accgtcgaag gtcagggttt
     3361 ctacggcatt gacgaggcgt tgggctttga aatgtccgac tggttccctt acgccctgac
     3421 ccgtacttgg cacatccaat ccgccatctt ctggattgca accggctttt tgacggcagg
     3481 tttgttcctt gcgccgattg tcaacggcgg taaagatccc aagttccaac gtgcaggcgt
     3541 gaacttcctc tatatcgccc tcttcatcgt ggtcggcggc tcttacgcgg gcaacttctt
     3601 cgcgttgacg cacatccttc ccccggaatt taacttctgg ttcggacacc aaggttacga
     3661 atacctcgat ttgggacgtt tctggcaact cctgctgatg gtcggcctgc tgttgtggct
     3721 gttcctgatg ttgcgttgca cggtttccgc cttcaaagaa aaaggcgtgg acaaaaacct
     3781 gctggcaatc tttgtcgctt ctatggtcgg tgtgggcgta ttctacgcac cgggactgtt
     3841 ctacggtgaa aaatccccga ttgccgttat ggaatactgg cgttggtggg tggttcacct
     3901 gtgggtagaa ggcttcttcg aagtatttgc cactgccgcc tttgcctttg tcttctacaa
     3961 tatgggcttt gtccgccgca gtaccgccac tgcctccact ttggccgctg ccgccatctt
     4021 tatgttgggc ggcgttccgg gcacgctgca ccacctgtac ttctccggct ctacctccgc
     4081 ctctatggca atcggtgcct gcttctccgc tttggaagtc gtgccgctgg tgttgctggg
     4141 ccgtgaagca tacgaacact ggtcttacca acacctgtcc gactgggcga aacgcctgcg
     4201 ttggccgctg atgtgcttcg tggcagtcgc cttttggaat atgatcggtg ccggcgtatt
     4261 cggcttcctg atcaatccgc cgatttccct gttctatatc caaggtttga acacttctgc
     4321 cgttcacgcg cacgccgcct tgtttggtgt gtacggtttc ttggcattgg gcttcgtatt
     4381 gctggttgcc cgttatttga aaccgaacgc gcagtttgac gacaaactga tgacttgggg
     4441 cttctggctg ctcaacggcg gcttggtcgg tatgattgcc atcagcctgc tgcctgtcgg
     4501 cgcgattcag gcatacgcct ccatcacgca cggtctgtgg tatgcccgca gcgaagagtt
     4561 cctgcaaatg gaaatcctcg ataccttgcg ttgggtacgt acggcagctg acttggtctt
     4621 tatcggcggt gcaatctgcg ttgccatcca agctactaaa atcgtattcg gccgcgacaa
     4681 ataagttttg cggtatgaaa tgagcaactg cacccgtttt cgggtgcagt tttttattgc
     4741 ggattgggac gggaatggaa aaggatgtgg attttttatt ttaatcggct atacaattgc
     4801 tgctttcatg ccgtctgaag cacgtttcag atggcatcgg tttacatcag ataaggataa
     4861 aaatgggtat ttacgatttt caaatgaaag atgcagaagg caatgcggtt gatttgtcag
     4921 gctatcgcgg caaggttctg ctgattgtca acacggcaac gcgttgcggt ctgaccccgc
     4981 aatacgaggc tttgcagaag ctgtatgcac aatataccgc agaaggcttg gagattttgg
     5041 attttccgtg caaccagttc cgcgaacagg ctcccgaaag cagcggagaa attgcccaag
     5101 tgtgtatgat gaagtttggc acgaagttta agattttcga caaaatcgaa gtcaatggag
     5161 caaataccgc gcccttgtat gcctacctga aatccgtcaa accgcaagat aaaggcaatc
     5221 atctgtttaa agatttcgtg ttgaagctcg cagctttggg agagaagcgc gacgaaggcg
     5281 acatcaaatg gaactttacc aaattcctcg tcaaccgcga cggcgaagtg gtcgagcgtt
     5341 ttgcgcctag tgttacgccc gaagaaatcg aagccgatat tcgggcattg ctgtaatctg
     5401 ccgccgtctt gggaaatgcc gtctgaaggc ttcagacggc atttgtccgt ttgcgggttt
     5461 attccgaaat atcggcaaca ccgctttcgg ggaagatggg caaatccggc ggtgggagca
     5521 gggtatccaa agtcagggcg gacgcatcga gtgtggggta gccttcaaac gcgaccgaat
     5581 aaccgctgtt tccgttcata cggattcggg cgtgcgcgcc cagagggaaa gtgattttgt
     5641 cggcaatgtg cccgaaggga aagcccgtca gcacggggat tttcgccgtg cgcgaaacat
     5701 ggttggcaac ggcggaaaaa tcataagacg gatcatagac atctcgaatt ttttccatac
     5761 ggaaattgcc gaacacgatg gcgcgctgtt tcttcaaaat acccgaaaga tacagcgtat
     5821 tgagcatacg ttcgatgcgg tagggctgtt cgccgacatc ttcgaggaac aaaatgccgc
     5881 cgtcgatgtc gggcatataa ggcgtgccgg cgagcgaggc gaggacgctt aagttgccgc
     5941 cccacaatat gccttcggtt tcgacatcgg cgcgttggat ataaggaaca tcaacggtca
     6001 ggcggttttg ggttgcaccc ttgataaagg catccatcgt aaacgcaccg ggggcgggtt
     6061 tgccaaaatc gctataagcc atcgggccgg caaaactcat catattgcct tttgccaaca
     6121 atgccagctg gacggcgcat acgtcgctga atccgaaaaa cagcgtgccg tgttcgcgca
     6181 tccttgcgcc gagcgaagca aaatcgatat gcggcagaat ccgcgccgca ccgtaaccgc
     6241 cgcgcaagcc catcagcact ttaggcgtgg cgacgcggcc ggaagcgacc tcttggaaat
     6301 cggcgacacg ttgtgcgtcc gtaccagcaa accgttggaa gcggcggctg cccgcctgtt
     6361 ggttggttac ggtaaaaccg gcattgtaaa ggcgggttaa ggctgtgttg acgcggttgg
     6421 tgtcttcggc aaagcctgac gaagcgacaa cgcgcagaag gttgccgtcc gaactttgac
     6481 ggcgtggcgt ttggagaggc acggttcggg ctttcacaac agaatgggaa gagggaaggg
     6541 gcggaacgga tgtggcggat gtgccgcaag cctgaagcag tcccgcgccg gcggcggcgg
     6601 tgcaggtttt cagaaaacga cggcgggagg tcggttcggt cataatttcc ctttcatacg
     6661 gtttcagacg gcatcggcgg gcttaaagca gctttttaag ctgttccgtc caatcttgcg
     6721 gcagggtcat accgtgtttt cggacggggt ttgcccaaat cggcgcaggg aaggacgcat
     6781 cgttttcaaa gcgggcgata atatgccaat gcaggtgcgg cacgacattg cccaagctgg
     6841 cgaggttaat cttggcaggt tgaaacactt ggcgcatagc ggcttcgact ttgtacacca
     6901 tttccatcaa ttcgccgcgt tccgctgccg aaaggtcggt catttcggca atatgcttac
     6961 gccaaatgac gcggcagaat gcaggcgaac cgctgtcgtt atggacggcg atgacgcgca
     7021 gcttgggggt ttgcagcaaa atatcttcat cttgtgccgt gcagatgggg cagggttggg
     7081 cggtcatttt tccttattcc tgaaagtgtt taaaaaacgg taggataatt tct
//
LOCUS       DAXHNP010000109         7114 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.109, whole genome shotgun sequence.
ACCESSION   DAXHNP010000109 DAXHNP010000000
VERSION     DAXHNP010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7114
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.109"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFM5C_001555"
     CDS             complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFM5C_001555"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFC6069227.1"
                     /translation="MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPKP
                     RVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELG
                     ARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLV
                     EDLITLRMLVEATLDFPEEDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLN
                     VVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRE
                     TDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSD
                     LHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEGEGLFLARTRHVNAL
                     KAAQEELSLAALCGNHQIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK"
     gene            1556..1711
                     /locus_tag="ACFM5C_001556"
     CDS             1556..1711
                     /locus_tag="ACFM5C_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069228.1"
                     /translation="MEKRNTYAFLLGIGSLLGLFHPAKTAIRPNPADDLKNIGGDFQR
                     AIEKARK"
     gene            1708..2139
                     /locus_tag="ACFM5C_001557"
     CDS             1708..2139
                     /locus_tag="ACFM5C_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2335 domain-containing protein"
                     /protein_id="HFC6069229.1"
                     /translation="MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARRFHSGP
                     LPPPSDLAQYNDIISNGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISVILIL
                     LFAVFLVWSGYPATAASLAGGTVVALAGAFVIGRSRDQGKN"
     gene            2273..6673
                     /gene="app"
                     /locus_tag="ACFM5C_001558"
     CDS             2273..6673
                     /gene="app"
                     /locus_tag="ACFM5C_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_168458961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion and penetration autotransporter App"
                     /protein_id="HFC6069230.1"
                     /translation="MKTTDKRTTETHRKAPKTGRIRFSPAYLAICLSFGILPQAWAGH
                     TYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVA
                     ALVGDQYIVSVAHNGGYNNVDFGAEGSNPDQHRFSYQIVKRNNYKAGTKGHPYGGDYH
                     MPRLHKFVTDAEPVEMTSYMDGWKYTDQNNYPDRVRIGAGRQYWRSDEDEPNNRESSY
                     HIASAYSWLVGGNTFAQNGSGGGTVNLGSEKIKHSPYGFLPTGGSFGDSGSPMFIYDA
                     QKQKWLINGVLQTGNPYIGKSNGFQLVRKNWFYDEIFTGDTHSVFYEPHQNGKYTFHD
                     NNNGTGKINAKHEHNSLPNRLKTRTVQLFNVSLSETAREPVYHAAGGVNSYRPRLNNG
                     ENISFIDEGKGELILTSNINQGAGGLYFQGDFTVSPENNETWQGAGVHISEDSTVTWK
                     VNGVANDRLSKIGKGTLHVQAKGENQGSISVGDGTVILDQQADDKGKKQAFSEIGLVS
                     GRGTVQLNADNQFNPDKLYFGFRGGRLDLNRHSLSFHRIQNTDEGAMIVNHNATTTST
                     VTITGNESITQPSGKNINRLNYSKEIAYNGWFGEKDATKTNGRLNLVYQPAAEDRTLL
                     LSGGTNLNGNITQTNGKLFFSGRPTPHAYNHLNNHWSQKEGIPHGEIVWDNDWINRTF
                     KAENFHIQGGQAVISRNVAKVEGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCV
                     ENTITDDKVIASLTNTDISGNVDLADHAHLNLTGLATLNGNLTAGGDTHYEVTHNATQ
                     RGNLSLVGNAQATFNQATLNGNTSASGNASFNLSNNAVQNGSLTLSGNAKANVSHSAL
                     NGNVSLADKAVFHFENSRLTGQISGGKDTALHLKDSEWTLPSGTELGNLNLDNATITL
                     NSAYRHDAAGAQTGSVSDTPRRRSRRSRRSRRSLLSVTPPTSAESRFNTLTVNGKLNG
                     QGTFRFMSELFGYRSDKLKLAESSEGTYTLAVNNTGNEPASLEQLTVVEGKDNKPLSE
                     NLNFTLQNEHVDAGAWRYQLIRKDGEFRLHNPVKEQELSDKLGKAEAKKQAGKDNAQS
                     LDALIAAGRDAVEKTESVAEPARQAGGENVGIMQAEEEKKRVQADKDSALAKQREAET
                     RPATTAFPRARRARRDLPQPQPQPQPQPQPQPQRDLISRYANSGLSEFSATLNSVFAV
                     QDELDRVFAEDRRNAVWTSGIRDTKHYRSQDFRAYRQQTDLRQIGMQKNLGSGRVGIL
                     FSHNRTENTFDDGIGNSARLAHGAVFGQYGIDRFYIGISAGAGFSSGSLSDGIGGKIR
                     RRVLHYGIQARYRAGFGGFGIEPHIGATRYFVQKADYRYENVNIATPGLSFNRYRAGI
                     KADYSFKPAQHISITPYLSLSYTDAASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIK
                     GFMLSLHAAAAKGPQLEAQHSAGIKLGYRW"
     gene            complement(6989..>7114)
                     /locus_tag="ACFM5C_001559"
     CDS             complement(6989..>7114)
                     /locus_tag="ACFM5C_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6069231.1"
                     /translation="KFRYARAAYFGLSKVSAQSHLKAMCLNLLKAANRLSAPAAA"
BASE COUNT         1890 a         2057 c         1728 g         1439 t
ORIGIN      
        1 aaccaaacgg atcggattcc cgtttttatg ggataacgga atgttcagcc ggacaccgcc
       61 acgatgcttt cgatccgttt attttccgat acaaaacctc gaaaaaatca cgccgagcag
      121 gtcgtccgcc gtaaactcgc ccgtgatttc gccgcatgcg acctgcgcca agcgcaagtg
      181 ttcggcaaac agctcgattt gatggttgcc gcacaatgcc gccagcgaca attcttcctg
      241 cgctgctttg agtgcgttga cgtgccgcgt ccgcgccaaa aacagccctt cgccctcgcc
      301 ctgccatccg gcctcgcgca acaacgtccg tttcagcgcg tccaagccgt cgccggtttt
      361 cgccgacagc gcgatgacgg tttccgcgcc cgtaccgaac ccgcctgccg cgtgtgcgtg
      421 caaatcggat ttgctgtgga tttcgatgcg tttcaactcc ggcggcaacg cgtccaaaat
      481 cgcccgtgtc ttgtcgttca cgccttcgcg cggatcgacc aacaccagcg cgacatcggc
      541 ttcggatacg gctttgcggc tgcgttcgat gccgatgcgt tcgaccacgt cgtccgtctc
      601 gcgcaaacct gccgtatcga caatatgcac cggaacgccg tcaatcagga tacgttccct
      661 gaccgcgtcg cgcgtcgttc cggcaatatc ggtaacaatc gccacttcgt cgcccgccag
      721 cgcgttcaac aggctggatt tgccgacatt cggcgcgccg accaatacga cattcagacc
      781 ttcgcgcaaa atcgcgccct gctgcgcgtt ggcaagcaca tcatccacgg cgcggcgcaa
      841 gccgtccagt ttgccgcgtg cgtctgccgc ttcgagaaaa tcaatgtctt cctcgggaaa
      901 atctaacgtc gcttcgacca gcatccgcaa ggtaatcaag tcttcgacca gaccgtgtat
      961 ccgccgcgaa aaatcgcctt tgagcgagcg caacgccaga cgcgccgccg aacggctgga
     1021 tgcgtcaatc aaatccgcca cgccttccgc ctgtgccaag tccagtttgt cgtttaaaaa
     1081 cgcacgcttc gtaaactcgc ccggttcggc aaggcgcgcg cccaattcca aacagcggtt
     1141 cagcagcata tccatcacta ccggcccgcc gtgtccctga agctcgataa catcttcgcc
     1201 cgtaaaactt gccggtgcgg caaaaaaaag caaaagcccg ctgtcgattg cctgaccgtc
     1261 cgcgtccgta aaatcagcat aggttgccac gcgcggcttg ggcgttttcc cacacaaagc
     1321 ctctgccatc ggcagcaggt ttttccccga tatgcgtatc acgcccacgc cgccgcgccc
     1381 gggtgcggta gcgactgccg caatcgttgg aacgttatcc gacataaaac ccccgaaaat
     1441 tcaaaacagc cgcgattata gcaaatgccg tctgaagtcc gacggtttgg ctttcagacg
     1501 gcataaaacc gcaaaaatgc ttgataaatc cgtccgcctg acctaatata accatatgga
     1561 aaaacgaaac acatacgcct tcctgctcgg tataggctcg ctgctgggtc tgttccatcc
     1621 cgcaaaaacc gccatccgcc ccaatcccgc cgacgatctc aaaaacatcg gcggcgattt
     1681 tcaacgcgcc atagagaaag cgcgcaaatg accgaaaacg cacaggacaa ggcgcggcag
     1741 gctgtcgaaa ccgtcgtcaa atccccggag cttgtcgagc aaatcctgtc cgacgagtac
     1801 gtgcaaataa tgatagcccg gcgtttccat tcgggaccgt tgccgccgcc gtccgacttg
     1861 gcgcaataca acgacattat cagcaacggg gcagaccgca ttatggcaat ggcggaaaaa
     1921 gaacaagccg tccggcacga aaccatacgg caagaccaaa ccttcaacag gcgcgggcaa
     1981 ctgtacggct tcatcagcgt catcctgata ctgctttttg ccgtcttcct cgtatggagc
     2041 ggctaccccg caaccgccgc ctcccttgcc ggcggcacag tggttgcctt ggcgggtgct
     2101 ttcgtgattg gaagaagccg agaccaaggc aaaaattaat gacaaatcct agggcgtgct
     2161 tcatatccgc ccgaacgccg aaccgcacat ataggcacat cccgcgcgcc gcccggaagc
     2221 ggaagccgcg ccctcccaaa caaacccgaa tcccgtcaga taaggaaaaa taatgaaaac
     2281 aaccgacaaa cggacaaccg aaacacaccg caaagccccg aaaaccggcc gcatccgctt
     2341 ctcgcctgct tacttagcca tatgcctgtc gttcggcatt cttccccaag cttgggcggg
     2401 acacacttat ttcggcatca actaccaata ctatcgcgac tttgccgaaa ataaaggcaa
     2461 gtttgcagtc ggggcgaaag atattgaggt ttacaacaaa aaaggggagt tggtcggcaa
     2521 atcaatgaca aaagccccga tgattgattt ttctgtggtg tcgcgtaacg gcgtggcggc
     2581 attggtgggc gatcaatata ttgtgagcgt ggcacataac ggcggttata acaatgttga
     2641 ttttggtgcg gagggaagca atcccgatca gcaccgtttt tcttaccaaa ttgtgaaaag
     2701 aaataattat aaagcaggga ctaaaggcca tccttatggc ggcgattatc atatgccgcg
     2761 tttgcataaa tttgtcacag atgcagaacc tgttgagatg accagttata tggatgggtg
     2821 gaaatatacc gatcaaaata attatcctga ccgtgttcga atcggagcag gcagacaata
     2881 ttggcggtct gatgaagatg aacccaataa ccgcgaaagt tcatatcata ttgcaagtgc
     2941 gtattcttgg ctcgttggtg gcaatacctt tgcacaaaat ggatcaggtg gtggcacagt
     3001 caacttaggt agtgaaaaaa ttaaacatag cccatatggt tttttaccaa caggaggctc
     3061 atttggcgac agtggctcac caatgtttat ctatgatgcc caaaagcaaa agtggttaat
     3121 taatggggta ttgcaaacag gcaaccccta tataggaaaa agcaatggct tccagctagt
     3181 gcgtaaaaat tggttttatg acgaaatttt taccggagat acccattcag tattctacga
     3241 accacatcaa aatgggaaat acacttttca cgacaataat aatggcacag gaaaaatcaa
     3301 tgccaaacat gaacacaatt ctctgcctaa tagattaaaa acacgaaccg ttcaattgtt
     3361 taatgtttct ttatccgaga cagcaagaga acctgtttat catgctgcag gtggtgtcaa
     3421 cagttatcga cccagactga ataatggaga aaatatttcc tttattgacg aagggaaagg
     3481 cgaattgata cttaccagta acatcaacca aggtgctgga ggattatatt tccaaggaga
     3541 ttttacggtc tcgcctgaaa acaacgaaac gtggcaaggt gcgggcgttc atatcagtga
     3601 agacagtacc gttacttgga aagtaaacgg cgtggcaaac gaccgcctgt ccaaaatcgg
     3661 caaaggcacg ctgcacgttc aagccaaagg ggaaaaccaa ggctcgatca gcgtgggcga
     3721 cggtacagtc attttggatc agcaggcaga cgataaaggc aaaaaacaag cctttagtga
     3781 aatcggcttg gtcagcggca ggggtacggt gcaactgaat gccgataatc agttcaaccc
     3841 cgacaaactc tatttcggct ttcgcggcgg acgtttggat ttaaacaggc attcgctttc
     3901 gttccaccgt attcaaaata ccgatgaagg ggcgatgatt gtcaatcata atgccacaac
     3961 aacatccacc gttaccatta cagggaatga aagtattaca caaccgagtg gtaagaatat
     4021 caatagactt aattacagca aagaaattgc ctacaacggt tggtttggcg agaaagatgc
     4081 gaccaaaacg aatgggcggc tcaaccttgt ttaccagccc gccgcagaag accgcaccct
     4141 gctgctttcc ggcggaacaa atttaaacgg taacatcacg caaacaaacg gcaaactgtt
     4201 tttcagcggc agaccaacac cgcacgccta caatcattta aacaaccatt ggtcgcaaaa
     4261 agagggcatt ccgcacggag aaatcgtgtg ggacaacgac tggattaacc gcacgtttaa
     4321 agcggaaaat ttccatattc agggcgggca ggcggtgatt tcccgcaatg ttgccaaagt
     4381 ggaaggcgat tggcatttga gcaatcacgc ccaagcagtt ttcggtgtcg caccgcatca
     4441 aagccacaca atctgtacac gttcggactg gacgggtctg acaaattgtg tcgaaaacac
     4501 cattaccgac gataaagtga ttgcttcatt gaccaatacc gacatcagcg gcaatgtcga
     4561 tcttgccgat cacgctcatt taaatctcac agggcttgcc acgctcaacg gcaatctgac
     4621 cgcaggcgga gacacgcact atgaggttac gcacaacgcc acccaaagag gcaaccttag
     4681 cctcgtgggc aatgcccaag caacatttaa tcaagccaca ttaaacggaa acacatcggc
     4741 ttcgggcaat gcttcattta atctaagcaa caacgccgta caaaacggca gtctgacgct
     4801 ttccggcaac gctaaggcaa acgtaagcca ttccgcactc aacggcaatg tctccctagc
     4861 cgataaggca gtattccatt ttgaaaacag ccgccttacc ggacaaatca gcggcggcaa
     4921 ggatacggca ttacacttaa aagacagcga atggacgctg ccgtcaggca cggaattagg
     4981 caatttaaac cttgacaacg ccaccattac actcaattcc gcctatcgcc acgatgctgc
     5041 aggcgcgcaa accggcagtg tgtcagacac gccgcgccgc cgttcgcgcc gttcgcgccg
     5101 ttcgcgccgt tccctattat ccgttacacc gccaacttcg gcagaatccc gtttcaacac
     5161 gctgacggta aacggcaaat tgaacggtca gggaacattc cgctttatgt cggaactctt
     5221 cggctaccgc agcgacaaat tgaagctggc ggaaagttcc gaaggcactt acaccttggc
     5281 ggtcaacaat accggcaacg aacctgcaag cctcgaacaa ttgacggtag tggaaggaaa
     5341 agacaacaaa ccgctgtccg aaaaccttaa tttcaccctg caaaacgaac acgtcgatgc
     5401 cggcgcgtgg cgttaccaac tcatccgcaa agacggcgag ttccgcctgc ataatccggt
     5461 caaagaacaa gagctttccg acaaactcgg caaggcagaa gccaaaaaac aggcgggaaa
     5521 agacaacgcg caaagccttg acgcgctgat tgcggccggg cgcgatgccg tcgaaaagac
     5581 agaaagcgtt gccgaaccgg cccggcaggc aggcggggaa aatgtcggca ttatgcaggc
     5641 ggaggaagag aaaaaacggg tgcaggcgga taaagacagc gccttggcga aacagcgcga
     5701 agcggaaacc cggccggcta ccaccgcctt cccccgcgcc cgccgcgccc gccgggattt
     5761 gccgcaaccg caaccccaac cgcaacccca accgcagccc caaccgcagc gcgacctgat
     5821 cagccgttat gccaatagcg gtttgagtga attttccgcc acgctcaaca gcgttttcgc
     5881 cgtacaagac gaattagacc gcgtatttgc cgaagaccgc cgcaacgccg tttggacaag
     5941 cggcatccgg gacaccaaac actaccgttc gcaagatttc cgcgcctacc gccaacaaac
     6001 cgacctgcgc caaatcggta tgcagaaaaa cctcggcagc gggcgcgtcg gcatcctgtt
     6061 ttcgcacaac cggaccgaaa acaccttcga cgacggcatc ggcaactcgg cacggcttgc
     6121 ccacggcgcc gttttcgggc aatacggcat cgacaggttc tacatcggca tcagcgcggg
     6181 cgcgggtttt agcagcggca gcctttcaga cggcatcgga ggcaaaatcc gccgccgcgt
     6241 gctgcattac ggcattcagg cacgataccg cgccggtttc ggcggattcg gcatcgaacc
     6301 gcacatcggc gcaacgcgct atttcgtcca aaaagcggat taccgctacg aaaacgtcaa
     6361 tatcgccacc cccggtcttt cgttcaaccg ctaccgcgcg ggcattaagg cagattattc
     6421 attcaaaccg gcacaacaca tttccatcac gccttatttg agcctgtcct ataccgatgc
     6481 cgcttcgggc aaagtccgaa cacgcgtcaa taccgccgta ttggctcagg atttcggcaa
     6541 aacccgcagt gcggaatggg gcgtaaacgc cgaaatcaaa ggtttcatgc tgtccctcca
     6601 cgctgccgcc gccaaaggcc cgcaactgga agcgcaacac agcgcgggca tcaaattagg
     6661 ctaccgctgg taaccgccgg atatgccgaa aggggtctga cgatgccacc gtgcgctgtc
     6721 aaaccctttt tctgccgccg ccttgtgcct gctccattgt ctgataaccg tcaaattgat
     6781 ttttagccca tgtttggtgg gtcggggaaa tctatatctt cgtccgtgcc gaaatagtct
     6841 gagacctttg caaaattcct ttccctcccg acagccgaaa cccaaacaca ggttttcgtc
     6901 tattttcgcc ccaaatacct cctaattcta cccaaatacc cccttaatcc tccacggaca
     6961 cccgataatc aggcatccgg gctgcttttt aggcggcagc gggcgcactt agcctgttgg
     7021 ccgctttcaa aaggttcaaa cacatcgcct tcagatggct ttgtgcactc actttgctca
     7081 gcccgaaata ggctgcccgc gcatagcgga attt
//
LOCUS       DAXHNP010000110         7113 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.110, whole genome shotgun sequence.
ACCESSION   DAXHNP010000110 DAXHNP010000000
VERSION     DAXHNP010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7113
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.110"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            204..1637
                     /gene="lpdA"
                     /locus_tag="ACFM5C_001560"
     CDS             204..1637
                     /gene="lpdA"
                     /locus_tag="ACFM5C_001560"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6069232.1"
                     /translation="MSQYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNAPA
                     LGGTCLNVGCIPSKALLQSSEHFHAAQHEFAEHGITVGDIKFDAAKMIERKDAIVTKL
                     TGGVKFLFQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRP
                     LPQVAIDNVNVLDNEGALNLTEVPAKLGVIGSGVIGLEMGSVWNRVGAEVTILEAAPT
                     FLAAADQQIAKEAFKYFTKEQGLNIELGVKIGDIKSEGKGVSVAYETAAGEAKTEVFD
                     KLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIGDVVRGPMLAHK
                     ASDEGVAVAERIAGQKPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEGVEYKKGTSGF
                     GANGRALAMGKAKGTVKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIA
                     RIIHAHPTLSEVVHEAALAADKRALHG"
     gene            1762..2049
                     /locus_tag="ACFM5C_001561"
     CDS             1762..2049
                     /locus_tag="ACFM5C_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069233.1"
                     /translation="MNKEIVGIFFIPMGIISMCMAALWQMYVMMTETYTLNRFKDKEL
                     VWRVALLFISFSLAVYLLCPNSRKKGIVFFILGGGGAAMYLLARMWLPFSK"
     gene            2103..3314
                     /gene="sucC"
                     /locus_tag="ACFM5C_001562"
     CDS             2103..3314
                     /gene="sucC"
                     /locus_tag="ACFM5C_001562"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFC6069234.1"
                     /translation="MEANSGHSTNLKEKSMNLHEYQAKELLASYGLPVQGGILAHNGE
                     EAAAAYDKLGGKFAVVKAQVHAGGRGKAGGVKVVKSREEAKEVAESLIGTNLVTYQTD
                     ANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKI
                     FKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLA
                     VRENGALACVDGKIGIDSNALYRLPKIAELRDKSQENERELKASEFDLNYVALEGNIG
                     CMVNGAGLAMATMDIIKLKGGQPANFLDVGGGATKDRVVEAFKLILEDKSVKGVLINI
                     FGGIVRCDMIAEAIVAAVKEINVDVPVIVRLEGNNAELGAKILNESGLKLTSADGLND
                     AAEKIVAAVNA"
     gene            3325..4215
                     /gene="sucD"
                     /locus_tag="ACFM5C_001563"
     CDS             3325..4215
                     /gene="sucD"
                     /locus_tag="ACFM5C_001563"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFC6069235.1"
                     /translation="MSVLINKDTKVLVQGFTGKNGTFHSEQALAYGTKVVGGVTPGKG
                     GQTHLNLPVFNTMKEAVKETGADASVIYVPAPFVLDSIVEAVDSGVGLVVVITEGVPT
                     LDMLKAKRYLETNGNGTRLVGPNCPGVITPGECKIGIMPGHIHTPGRIGIISRSGTLT
                     YEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIDALKLFQEDPDTDAIIMIGEIGGTAEE
                     EAAEYIQSNVSKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAAFEKAGIAYT
                     RSPAELGTTMLEVLKTKGLA"
     gene            4244..4384
                     /locus_tag="ACFM5C_001564"
     CDS             4244..4384
                     /locus_tag="ACFM5C_001564"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069236.1"
                     /translation="MPSETGNRVSDGILFVISKRGSLNIPTLFLPFEAGRIFIGQTGA
                     NP"
     gene            complement(4450..4779)
                     /locus_tag="ACFM5C_001565"
     CDS             complement(4450..4779)
                     /locus_tag="ACFM5C_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069237.1"
                     /translation="MDVQKQYSFETVAVCVLPNHIHAIWTLPPDDADYSLLRRLIKTK
                     FSAYSPYTKNLSAGKQRQHERGIWQRRFYGHTVRDETDLQRCADYIHSNPIKQKMSRA
                     KTESCKK"
     gene            5028..5327
                     /locus_tag="ACFM5C_001566"
     CDS             5028..5327
                     /locus_tag="ACFM5C_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069238.1"
                     /translation="MKRQTVNQATACVRTAHTLHVDFEVPCNSQVGCVAQPRTRCWVC
                     RLRLAAAETPEEKAKDAAEEAKEEAKDAAEEAKEEAKDAAEDAKEAAEDAKEEAK"
     gene            complement(5554..6477)
                     /locus_tag="ACFM5C_001567"
     CDS             complement(5554..6477)
                     /locus_tag="ACFM5C_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HFC6069239.1"
                     /translation="MKTIAPSHIKPLMPELNQSQRNRIIFIDFYLCFLGKINRKDLMQ
                     AFQISPAVATRDFALYCSSFSKNLRFDTKSKFYLSTEDFEPQFPHSFENAIKILNGSL
                     IFDIDSQHQPLLPFDLPPVLINPDVLIFSKISKALSLKKPLKISYHSISSGLSEKVIV
                     PLALVNDGFRWHLRAFDRTKNRFADFVLTRIIQANILLAENIEENETINNDIDWNRIV
                     KIELVPHPNHDEAKKVIEMDFGMTNGKLELALRASNIGYVLQQWRVDCSSDHHIDDPA
                     FRLWLLDNLVLYGINNAEHLAPAFDKKRSKP"
     gene            6633..6902
                     /locus_tag="ACFM5C_001568"
     CDS             6633..6902
                     /locus_tag="ACFM5C_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069240.1"
                     /translation="MKIKFAHLRHPAVGGGYINFAVFDAKSTNGNHSVVLKELTTEAR
                     RNGLKIDQSALIFEQHGRTQFYGDKNLVDFLSANWYPQWTHTLTI"
     gene            6918..7103
                     /locus_tag="ACFM5C_001569"
     CDS             6918..7103
                     /locus_tag="ACFM5C_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069241.1"
                     /translation="MTNKIKPGQNTGNNGGIYQEIGSRGGRKDNYATIKDNQKAPPTQ
                     NPGSSWIQIKRTPDSSR"
BASE COUNT         2060 a         1566 c         1712 g         1775 t
ORIGIN      
        1 gatgtagcgt aatgtagtat cgtgctacaa taggctcagc gaacgattga ggccgtctga
       61 aacatttgat tcgaatgaat cggcagatat agactttcag acggcctttt cttaaaaccg
      121 tcaaaatgca gtcattcaaa ataaaaaaga aacaaaaagt atcgttttta ttttgagata
      181 ctgcaaaagc aaaggatgac acgatgtctc aatatgatgt agtagtgatt ggtgcaggcc
      241 cgggcggata cgttgccgcc atccgtgccg cgcaactggg tttcaaaacc gcttgcgttg
      301 acgcaggggt taacaaagca ggcaatgccc ctgcattggg cggtacttgc ttgaacgtag
      361 gctgtattcc ttccaaagcc ctgttgcaat ccagcgaaca tttccacgcc gcgcaacacg
      421 agtttgccga acacggtatc actgtcggcg acataaaatt cgacgcggcc aaaatgattg
      481 agcgcaaaga tgccatcgtg accaagctga ccggcggcgt gaaattcctg ttccaaaaaa
      541 acaaagtaac cagcctgttc ggtactgctt cttttgccgg taaaaatggc gatgcttacc
      601 aaatcgaagt cgataacaaa ggcgagaaaa ccgttatcga agccaaacac gtcatcgtag
      661 caaccggttc cgtaccgcgt ccgctgccac aagtcgctat cgacaacgtg aacgtattgg
      721 acaacgaagg cgcattgaac ctgaccgaag tgcctgccaa actgggcgtc atcggttccg
      781 gcgtgattgg tttggaaatg ggttccgtat ggaaccgcgt gggtgcagaa gttaccattc
      841 ttgaagctgc gccgaccttc ctggctgccg ccgaccaaca aatcgccaaa gaagccttca
      901 aatacttcac taaagagcag ggcttgaaca tcgaactggg cgtgaaaatt ggcgacatca
      961 aatctgaagg caaaggcgtt tccgttgctt acgaaactgc tgccggcgaa gctaaaaccg
     1021 aagtatttga caaactgatc gttgccattg gccgtattcc aaacaccaaa ggtctgaacg
     1081 ccgaagccgt aggcttggaa aaagacgagc gcggtttcat caaagtagat ggcgaatgcc
     1141 gtaccaacct gcctaacgta tgggcaatcg gcgacgtggt tcgcggcccg atgttggcac
     1201 acaaagccag cgatgaaggc gttgccgttg ccgagcgcat cgccggtcaa aaaccgcata
     1261 tcgacttcaa caacgtaccg ttcgtgattt acaccgatcc tgaaatcgct tgggtaggta
     1321 aaaccgaaga gcagctcaaa gccgaaggcg tggagtacaa aaaaggtact tcaggtttcg
     1381 gtgcaaacgg tcgcgcattg gcaatgggca aagccaaagg tacggttaaa gtattggcag
     1441 atgccaaaac cgaccgcatc ttgggcgtac acatgattgg tccggttgtc agcgaattgg
     1501 ttaccgaagg cgtgactgcg ctcgaattct tcgccagcag cgaagacatc gcccgcatta
     1561 tccatgccca cccgaccttg tccgaagtgg ttcacgaagc tgcattggcg gccgacaaac
     1621 gcgctttgca cggttgatag atattaaggc cgtctgaaac ttttcagacg gccttaaggc
     1681 tttcgacaaa ttgaatgttc cgagagcttc gttttctgat ttataattcc gtcagacaaa
     1741 caaacagcat ttacattcgt tatgaacaaa gaaatagtcg gtattttctt tataccgatg
     1801 ggcatcatca gcatgtgtat ggccgcattg tggcagatgt atgtgatgat gaccgaaact
     1861 tatacgctca accgtttcaa agataaagaa ttggtttggc gcgtggcatt gttgtttatc
     1921 agtttcagcc ttgccgttta tctgctctgt ccgaattcgc gtaaaaaagg catcgtcttt
     1981 tttattctcg ggggaggcgg tgcagccatg tatctgctgg cgcggatgtg gttgcctttc
     2041 agcaagtgaa acgacgattt tccgaccgcc gaaaggtagt ctgaaacgca cgggcttgcc
     2101 atttggaggc aaactcgggg cattccacta atctaaagga gaaatccatg aatttacacg
     2161 agtatcaggc taaagaactg ctggctagct acggtttgcc cgtacaaggc ggtattttgg
     2221 cacacaacgg cgaagaagcc gctgcagctt acgacaaatt gggcggcaaa ttcgctgttg
     2281 tcaaagcaca agtacatgcc ggcggccgcg gtaaagcggg cggcgtaaaa gtcgttaaaa
     2341 gccgcgaaga agctaaagaa gtggctgaaa gcctgattgg caccaacttg gtaacttacc
     2401 aaaccgatgc caacggccaa cctgtcaaca gcgttttggt ttgtgaagat atgtatccgg
     2461 ttcaaaccga gctgtacttg ggcgcagtgg ttgaccgttc tacccgccgc gttacattca
     2521 tggcttctac cgaaggtggc gtagaaatcg aaaaagttgc tgccgaaact ccagaaaaaa
     2581 tcttcaaagt aaccgttgat ccgctggtcg gcctgcaacc ttgccaagct cgcgaagttg
     2641 ccttccaact gggcttgaaa gacaaacaaa tcaacgagtt cgtcaaactg atgaccggcg
     2701 cgtacaaagc gtttgtcgaa aacgacttcg ccctgtttga agtcaacccg ctggcagttc
     2761 gcgaaaacgg cgcgctcgcc tgcgtggacg gcaaaatcgg catcgacagc aacgcgctct
     2821 accgcctgcc aaaaatcgct gaattgcgcg acaaatctca agaaaacgaa cgtgaactga
     2881 aagcttctga attcgacctg aactatgttg ccctggaagg caacatcggc tgtatggtta
     2941 acggtgccgg tttggcgatg gccaccatgg acatcatcaa actcaaaggc ggtcaacctg
     3001 ccaacttctt ggacgttggc ggcggcgcaa ccaaagaccg cgtggttgaa gcgttcaaac
     3061 tgattttgga agacaaatcc gttaaaggcg tattgatcaa catcttcggc ggtatcgtac
     3121 gttgcgacat gattgcggaa gccatcgtgg cagccgttaa agaaatcaac gtcgacgttc
     3181 ctgtcattgt tcgtttggaa ggcaacaacg ccgaactcgg cgcgaaaatc ctgaacgaat
     3241 caggtctgaa actgacttct gcagacggcc tgaatgacgc agccgaaaaa attgttgcag
     3301 ccgtaaacgc ctaaggagaa aagaatgagc gtattgatta ataaagacac caaagtattg
     3361 gttcaaggtt tcaccggtaa aaacggtact ttccactccg aacaagctct ggcttacggc
     3421 actaaagttg tcggcggcgt taccccgggc aaaggcggtc aaacccacct gaacctgcct
     3481 gtattcaaca ccatgaaaga agccgttaaa gaaaccggcg cggatgcatc tgtaatttac
     3541 gttcccgctc cgtttgtgtt ggattctatc gttgaagccg ttgattccgg cgtaggcttg
     3601 gtggttgtga ttaccgaagg cgtgccgact ctggacatgc tcaaagccaa acgttacttg
     3661 gaaaccaacg gcaacggtac ccgcttggtc ggccctaact gcccgggcgt gattacccca
     3721 ggcgagtgca aaatcggtat tatgccgggc cacatccaca ctccgggccg catcggtatt
     3781 atttcccgtt ccggtacatt gacttacgaa gccgtggcac aaaccaccaa actgggcttg
     3841 ggtcaatcaa cctgtatcgg tatcggcggc gacccgattc ccggtatgaa ccaaatcgac
     3901 gcactgaaac ttttccaaga agacccagat accgacgcca tcatcatgat cggtgaaatc
     3961 ggcggtactg cggaagaaga agcagccgaa tacatccaat ccaacgtaag caaacctgtt
     4021 gtcggctaca tcgccggtgt taccgctcct aaaggcaaac gcatgggcca cgccggtgcg
     4081 attatttccg gcggcaaagg tactgccgag gaaaaattcg ccgcgtttga aaaagccggt
     4141 atcgcttaca cccgcagccc tgccgagttg ggcactacca tgctggaagt gttgaaaaca
     4201 aaaggtttgg cataatcagg tttgacaact gattgaacat caaatgccgt ctgaaaccgg
     4261 aaatcgggtt tcagacggca ttttgtttgt catttcaaaa agaggcagcc tcaacatacc
     4321 cacattattt ttgccctttg aggcaggcag aatatttatc ggtcaaacag gagcaaaccc
     4381 gtaagtcagg ttgcacacgc cttgtttgaa gttggggaat gataactatc gcatttgaaa
     4441 agactgatat tattttttgc aggattctgt tttagcacgc gacatttttt gtttgatagg
     4501 attggaatgg atgtagtccg cgcaacgctg caaatccgtt tcgtcgcgca cggtgtgtcc
     4561 gtaaaaacgc cgttgccaaa taccgcgttc gtgctgccgc tgtttgccgg cggataagtt
     4621 tttagtataa ggggaatatg cggagaattt ggttttaatc agccgccgga gtagggaata
     4681 atccgcatcg tcgggcggca gcgtccaaat ggcgtgaata tggttcggca gcacgcatac
     4741 ggcgacggtt tcaaaggaat attgtttttg cacatccata taagccgccc gcgaagtcga
     4801 tatgttcgac aagcaggcgc gatttcgggt cggcgagttt gacggtgaaa aagaatgtgc
     4861 cgccggcaat gaagtttctg cgataacgcg ccataggatt tttgtttttg gtttgagcgt
     4921 tggagaagga atggcttgtt gtttaaggtt tttaacttcg ttgaagctag cgctttcaga
     4981 cgacattgga ggccgtctga aagcgctagc ttcaacgaag ttaaaagttg aaacggcaaa
     5041 ccgtcaatca agcaaccgcg tgcgtgcgta ccgcacacac cctacacgtt gattttgaag
     5101 ttccgtgtaa ttcacaggta gggtgtgtgg cgcagccacg cacgcggtgt tgggtatgca
     5161 ggctacggct tgctgctgca gaaactcctg aagaaaaagc caaagacgcc gctgaagagg
     5221 ctaaagaaga agcaaaagac gccgctgaag aggctaaaga agaagcaaaa gacgcagcgg
     5281 aagatgccaa agaagctgct gaagacgcta aagaagaagc taaataattc ggatagcttt
     5341 acagaaaaac ggattccaat gattgggaat ccgttttttg ttttgtgagt tagggtagtt
     5401 gttttagata aagctttttc agttttcaga cggccatttt tcatgccgtc tgaaagtgtt
     5461 agttttaact aagttcaatt tacaacagaa agccatcaat caaacaaccg cgtgtgtggc
     5521 gcagccacgc acgcggtcgg ttggatatgt aggctacggc ttgctacgtt ttttatcaaa
     5581 ggcaggcgct aagtgttcag cattgttgat gccgtataaa actaaattat ctaacagcca
     5641 taatctaaaa gcaggatcat cgatatgatg atctgacgaa caatcgactc gccattgctg
     5701 taaaacatat ccgatatttg aagctctaag cgccaattct aattttccat ttgtcattcc
     5761 aaagtccatt tcaatcactt ttttagcttc atcatgatta ggatggggaa ccaactcgat
     5821 tttaacaatt ctattccaat caatatcatt gttaatcgtt tcattttctt caatattttc
     5881 agctaataaa atatttgctt gaattattcg tgttaggaca aaatctgcaa atcggttttt
     5941 tgttctatcg aatgcccgta aatgccatcg aaatccgtca ttaactagag caagaggcac
     6001 aataactttc tcagataatc cagatgaaat tgaatgatat gagattttta gaggtttttt
     6061 taaggataat gctttcgata ttttagaaaa gattaagaca tcaggattta ttaaaacagg
     6121 aggtaaatca aacggaagaa gaggttgatg ttgggaatca atatcaaata ttaaactgcc
     6181 attaagaatt ttaattgcat tttcaaatga atgggggaat tgaggttcaa agtcttcagt
     6241 agagaggtaa aatttacttt tggtatcaaa acggagattt ttcgaaaaac tagagcaata
     6301 tagcgcaaaa tccctagtag caacagctgg ggaaatttga aatgcctgca tcaaatcttt
     6361 tctatttatc tttcctagaa agcatagata gaaatcaata aatataatcc tattgcgttg
     6421 agattggttc aactctggca taaggggctt tatatgggaa ggagcgattg ttttcataat
     6481 tgcattatat tccatcaatc tttttcatgg caatatgaat tcaaaaaaat tgcttgacgt
     6541 aatcaaaaag agtgcatata atgcaaaaag ctacttcata gtagctctct gacttaaaat
     6601 ttctgttatg taatttttta taggatttat ttatgaaaat aaaatttgct cacttaagac
     6661 atccagccgt aggtggagga tatattaact ttgctgtttt tgatgctaaa tcaactaatg
     6721 gtaaccatag tgtcgtactg aaggaattga ccactgaagc tcgtagaaat ggattaaaaa
     6781 ttgaccaatc tgcgttaata tttgaacaac atgggcgtac acaattctat ggagacaaaa
     6841 atctagtaga ttttttatct gcaaattggt atccgcaatg gactcatact ttaactattt
     6901 aaattatgga gatgataatg acgaacaaaa tcaaacctgg tcaaaataca ggaaataacg
     6961 gtggaattta tcaagaaatt ggttcacgag gtggtcgaaa agataactac gcaaccatta
     7021 aagataatca aaaagcacca cccactcaaa atccaggaag ctcatggatt caaattaaaa
     7081 gaactccaga tagctccaga taataaggat agt
//
LOCUS       DAXHNP010000111         7072 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.111, whole genome shotgun sequence.
ACCESSION   DAXHNP010000111 DAXHNP010000000
VERSION     DAXHNP010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7072
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.111"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            121..1971
                     /gene="ltgA"
                     /locus_tag="ACFM5C_001570"
     CDS             121..1971
                     /gene="ltgA"
                     /locus_tag="ACFM5C_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase LtgA"
                     /protein_id="HFC6069242.1"
                     /translation="MYLPSMKHSLPLLATLVLAACSSTNTLPAGKTPADNIETADLSA
                     SVPTRPAEPEGKTLADYGGYPSALDAVKQKNDAAVAAYLENAGDSAMAENVRNEWLKS
                     LGARKQWTLFAQEYAKLEPAGRAQEVECYADSSRNDYTRAAELVKNTGKLPSGCTKLL
                     EQAAASGLLDGNDAWRRVRGLLAGRQTTDARNLAAALGSPFDGGTQGSREYALLNVIG
                     KEARKSPNAAALLSEMESGLSLEQRSFAWGVLGHYQSQNLNVPAALDYYGKVADRRQL
                     TDDQIEWYARAALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNTQEAEKL
                     YKQAAATGRNFYAVLAGEELGRKIDTRNNVPDADANSVLRMAEDGAIKRALVLFQNSR
                     TAGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAVNSAERTDRKLNYTL
                     RYISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVIGAQSRVGAQGLMQVMPATAREI
                     AGKIGMDAAQLYTADGNIRMGTWYMADTKRRLQNNEVLATAGYNAGPGRARRWQADTP
                     LEGAVYAETIPFSETRDYVKKVMANAAYYASLFGAPHIPLKQRMGIVPAR"
     gene            2260..2472
                     /gene="rpsU"
                     /locus_tag="ACFM5C_001571"
     CDS             2260..2472
                     /gene="rpsU"
                     /locus_tag="ACFM5C_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFC6069243.1"
                     /translation="MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTE
                     RKRKKAAAVKRLQKRLRSQQLPPKMY"
     gene            2604..3050
                     /locus_tag="ACFM5C_001572"
     CDS             2604..3050
                     /locus_tag="ACFM5C_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFC6069244.1"
                     /translation="MSLKIRLTEDMKTAMRAKDQVSLGTIRLINAAVKQFEVDERTEA
                     DDAKITAILTKMVKQRKDSAKIYTEAGRQDLADKENAEIEVLHRYLPQMLSAGEIRTA
                     VDAAVAETGAAGMADMGKVMGVLKTRLAGKADMGEVNKILKAVLTA"
     gene            complement(3128..3370)
                     /locus_tag="ACFM5C_001573"
     CDS             complement(3128..3370)
                     /locus_tag="ACFM5C_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069245.1"
                     /translation="MPSERNRVSDGILSDGAQTESVYRQNPFRCIETVLPLPIRYWDV
                     IASALECNYGAANQAIERQRQRAAAVAVHERVAKFL"
     gene            complement(3375..3767)
                     /locus_tag="ACFM5C_001574"
     CDS             complement(3375..3767)
                     /locus_tag="ACFM5C_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HFC6069246.1"
                     /translation="MPTSTKPYILRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDN
                     EIMLNIGATATQNLQIDNDWISFSARFGGQAHDIWIPVGHVLSLFARETGEGMGFELE
                     AYRPDTPPENTSAETAPRPAKKGLKLVK"
     gene            complement(3839..4444)
                     /locus_tag="ACFM5C_001575"
     CDS             complement(3839..4444)
                     /locus_tag="ACFM5C_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HFC6069247.1"
                     /translation="MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDVDIYNKPEDLAVM
                     NPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELF
                     NHVQVLENPAATNKEQAKAREAIGNGLTMLAPSFSKSKYILGEDFSMIDVALAPLLWR
                     LDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMRK"
     gene            complement(4546..6222)
                     /locus_tag="ACFM5C_001576"
     CDS             complement(4546..6222)
                     /locus_tag="ACFM5C_001576"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArnT family glycosyltransferase"
                     /protein_id="HFC6069248.1"
                     /translation="MLTYTPPDARPPAKTHEKPWLLLLMAFAWLWPGVFSHDLWNPAE
                     PAVYTAVEALAGSPTPLVAHLFGQTDFGIPPVYLWVAAAFKHLLSPWAADSYDAARFA
                     GVFFAVVGLTSCGFAGFNFLGRHHGRSVVLILIGCIGLIPTVHFLNPAAAAFAAAGLV
                     LHGYSLACRRVIAASFLLGTGWTLMSLAAAYPAAFALMLPLPVLMFFRPWQSRRLMLT
                     AVASLAFALPLMTVYPLLLAKTQPALFAQWLDDHVFGTFGGVRHVQTAFSLFYYLKNL
                     LWFALPALPLAVWTVCRTRLFSTDWGILGVVWMLAVLVLLAANPQRFQDNLVWLLPPL
                     ALFGAAQLDSLRRGAAAFVNWFGIMAFGLFAVFLWTGFFAMNYGWPAKLAERAAYFSP
                     YYVPDIDPIPMAVAVLFTPLWLWAITRKNIRGRQAVTNWAAGVTLTWALLMTLFLPWL
                     DAAKSHAPVVRSMEASLSPELKRELSDGIECIDIGGGDLHTRIVWTQYGTLPHRVGDV
                     QCRYRIVRLPQNADASQGWQTVWQGARPRNKDSKFALIRKIGENILKTTD"
     gene            complement(6383..6997)
                     /locus_tag="ACFM5C_001577"
     CDS             complement(6383..6997)
                     /locus_tag="ACFM5C_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000615741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="HFC6069249.1"
                     /translation="MIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQF
                     LGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPIFLGIKVLLLGDSDGEAIAKEGLRK
                     DNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKL
                     AQVPSVGETLEKYSRWFVAVVYLGLGIYILVENNSFDMLWTVLG"
BASE COUNT         1834 a         1949 c         1883 g         1406 t
ORIGIN      
        1 gtcggaaaca ttccaaaggc ggtgcagttt cggcatataa ttcgggcaaa cgcctgttca
       61 gacggcattt tgtcttttcc aaccctgacc gttcagggtt ccgattctta aggaaatccg
      121 atgtacctac cctctatgaa gcattccctg ccgctgctgg cgaccctagt gcttgccgcg
      181 tgttcttcga caaacacact gccagccggc aagaccccgg cagacaatat agaaactgcc
      241 gacctttcgg caagcgttcc cacccgccct gccgaaccgg aaggaaaaac gctggcagat
      301 tacggcggct acccgtccgc actggatgca gtgaaacaga aaaacgatgc cgccgtcgcc
      361 gcctatttgg aaaacgccgg cgacagtgcg atggcggaaa atgtccgcaa cgagtggctg
      421 aagtctttgg gcgcacgcaa acagtggacg ctgtttgcac aggaatatgc caaactcgaa
      481 ccggcagggc gcgcccaaga agtcgaatgc tacgccgatt cgagccgcaa cgactatacg
      541 cgtgccgccg aactggtcaa aaatacgggc aaactgcctt cgggctgcac caaactgttg
      601 gaacaggcag ccgcatccgg cttgttggac ggcaacgacg cctggaggcg cgtgcgcgga
      661 ctgctggccg gccgccaaac cacagacgca cgcaaccttg ccgccgcatt gggcagcccg
      721 tttgacggcg gtacacaagg ttcgcgcgaa tatgccctgt tgaacgtcat cggcaaagaa
      781 gcacgcaaat cgccgaatgc cgccgccctg ctgtccgaaa tggaaagcgg tttaagcctc
      841 gaacaacgca gtttcgcgtg gggcgtattg gggcattatc agtcgcaaaa cctcaatgtg
      901 cctgccgcct tggactatta cggcaaggtt gccgaccgcc gccaactgac cgacgaccaa
      961 atcgagtggt acgcccgcgc cgccttgcgc gcccgacgtt gggacgagct ggcctccgtt
     1021 atctcgcata tgcccgaaaa actgcaaaaa agcccgacct ggctctactg gctggcacgc
     1081 agccgcgccg caacgggcaa cacgcaagag gcggaaaaac tttacaaaca ggcggcagcg
     1141 acgggcagga atttttatgc ggtgctggca ggggaagagt tggggcgcaa aatcgatacg
     1201 cgcaacaatg ttcccgatgc cgacgcaaac agcgtcctcc gtatggcgga agacggcgcg
     1261 attaagcgtg cgctggtact gttccaaaac agccggaccg ccggcgatgc gaaaatgcgc
     1321 cgtcaggctc aggcggaatg gcgttttgcc acacgcgggt tcgacgaaga caagctgctg
     1381 accgccgcac aaaccgcgtt cgaccacggt ttttacgata tggcggtcaa cagcgcggaa
     1441 cgcaccgacc gcaaactcaa ctacaccttg cgctatattt cgccgtttaa agacacggta
     1501 atccgccacg cgcaaaatgt taatgtcgat ccggcttggg tttacggcct gattcgtcag
     1561 gaaagccgct tcgttatagg cgcgcaatcc cgcgtaggcg cgcaggggct gatgcaggtt
     1621 atgcctgcca ccgcgcgcga aatcgccggc aaaatcggta tggatgccgc acaactttac
     1681 accgccgacg gcaatatccg tatggggacg tggtatatgg cggacaccaa acgccgcctg
     1741 caaaacaacg aagtcctcgc caccgcaggc tataacgccg gtcccggcag ggcgcgccga
     1801 tggcaggcgg acacgcccct cgaaggcgcg gtatatgccg aaaccatccc gttttccgaa
     1861 acgcgcgact atgtcaaaaa agtgatggcc aatgccgcct actacgcctc cctcttcggc
     1921 gcgccgcaca tcccgctcaa acagcgtatg ggcattgtcc ccgcccgctg acgtaccgat
     1981 gccgtctgaa acccgcccgg tctttcagac ggcattttta tcccgaacgg cattgacggc
     2041 gaaccataaa tataagacaa tccgaaaatt gtttttcctg ctttttcaag cagcttgaca
     2101 cggcacaagc cgacccgtta ggaggtgatg tttccgtcac ggcgcgtatc ccgccgccgc
     2161 aaggcacagc gatacggtaa accttcaaca ccgtctgccc taccctttcc accgatatga
     2221 tgggcagatg aaacaaccga atttattaaa ggaaataaaa tgcctgcaat ccgcgtaaaa
     2281 gagaatgaac catttgaagt cgctatgcgc cgtttcaaac gcgccgtaga aaaaaccggc
     2341 ctgctgaccg agctgcgcgc ccgcgaagcc tacgaaaaac cgactaccga acgcaaacgc
     2401 aaaaaagcgg cagccgtaaa acgcctgcaa aaacgcctgc gcagccaaca actgccgccc
     2461 aaaatgtact aaacgttcaa gtacagatta caggtcagcc ctgtgatatg aggacacacc
     2521 gcaagacctg ctctgcggtg tgttttgctt ttcagacggc atcgaaaccc gccgtttcca
     2581 tccgacatcc cagcgaggac atcatgagcc tgaaaatccg ccttaccgaa gacatgaaaa
     2641 ccgcgatgcg cgccaaagac caagtttccc tcggcaccat ccgcctcatc aacgccgccg
     2701 tcaaacagtt tgaagtggac gaacgcaccg aagccgacga tgccaaaatc accgccatcc
     2761 tgaccaaaat ggtcaaacag cgaaaagaca gcgcgaaaat ctacactgaa gccggccgtc
     2821 aggatttggc agacaaagaa aacgccgaaa tcgaggtact gcaccgctac cttccccaaa
     2881 tgctctccgc cggggaaatc cgtactgcgg tcgatgccgc cgttgccgaa accggcgcgg
     2941 caggtatggc ggatatgggc aaagtgatgg gcgtattgaa aacccgcctc gccggcaaag
     3001 ccgatatggg cgaagtcaac aaaatcctga aagccgtgct gaccgcctga ttgcccgaat
     3061 atcggacaaa atgccgtctg aagcccgtat cgcaggttca gacggcattt tcatggtttg
     3121 atgatattta taaaaatttt gcaacacgct catgcacagc aactgccgct gctcgttggc
     3181 gttgccgctc tatcgcttgg ttagctgcac cataattgca ctctaatgct gatgcaataa
     3241 cgtcccaata tcgaatcggc aggggcaaca cggtttcgat acaccgaaac gggttttgcc
     3301 gataaacgga ttccgtttgc gccccatcgg acaaaatgcc gtctgaaaca cgattccgtt
     3361 cagacggcat agatttattt gaccaatttc aagccttttt tggcgggccg gggcgcggtt
     3421 tcggcagagg tgttttcagg cggcgtgtcg gggcgatacg cttccaattc aaaccccata
     3481 ccttcgccgg tctcccgtgc gaaaaggctg aggacgtgtc cgacaggtat ccatatgtcg
     3541 tgcgcctgtc cgccgaagcg ggcggaaaag ctgatccaat cgttgtcgat ttgaaggttt
     3601 tgcgtggcgg tcgcgccgat gttgagcata atttcgttgt cgcggacgta ctgcatgggg
     3661 acacgcgtgt gttcgttgac ccagacaaga atgtgcggcg tgaggctgtt atcgctgcac
     3721 cattcgcaaa gtgcgcggag gatgtagggt ttggtggaag tgggcataat gggttccgtg
     3781 tggtgtgcct gaatgtgaaa atgcctacaa aacggcgggt tttgcaagca ttccgggctt
     3841 atttgcgcat ggctttttcg gcgggtgtca gtgcttcgat aaaggcttcg cgctggaaga
     3901 tgcgctcggc gtatttgagc agcggcgcgg cacttttgcc cagtttgaca tcgtagtggt
     3961 cgagccgcca cagcagcgga gcaagggcga catcaatcat agaaaaatct tcgccgagga
     4021 tgtatttgct tttgctgaac gaaggggcaa gcatggtcag accgttgccg atggcttcgc
     4081 gcgcttttgc ctgttccttg ttggtggcgg cggggttttc taacacttgg acgtggttga
     4141 acaattcttt ttccatacgg tacagcacca gccggccccg gccgcgcata acgggatcgc
     4201 cgggcataag ctgcggatga gggaagcgtt cgtcgatgta ttcgttgatg atgttggact
     4261 cgtgcagcac caaatcgcgc tcgaccagca cgggaacttg gttatacgga ttcatgacgg
     4321 cgaggtcttc gggtttgttg taaatatcga cgtctttgat ttcaaaatcc ataccttttt
     4381 cgtacaaaac gaagcggcag cggtggctga aggggcaggt aatgccggaa tagagggtca
     4441 tcataataat tgtcgctcct gtgtgatgcc tgcaaaacgg ctgatttata aaggtttaat
     4501 cgcgcaatta tacgcgattt ccggcactta atccagaaat tcggctcaat ctgttgtttt
     4561 taatatattt tccccgattt tccgtatcag tgcgaactta ctgtctttgt tgcgcgggcg
     4621 cgcaccctgc cagaccgtct gccagccttg cgacgcatcc gcattttggg gcaagcggac
     4681 gatacggtag cggcattgta catcgccgac gcggtgcggc aatgtgccgt actgcgtcca
     4741 aacaatccgc gtgtgcaggt cgccgccgcc tatgtcgata cactcgatgc cgtctgaaag
     4801 ctcccgtttt aattccgggg aaagcgatgc ctccatactc cggacgaccg gcgcgtggct
     4861 tttcgccgcg tccagccacg gcaggaacag cgtcatcagc aaagcccagg tcagggtaac
     4921 gcctgccgcc cagttggtaa ccgcctgcct gccgcgtatg tttttccggg taatcgccca
     4981 cagccacaag ggtgtgaaca gtacggcaac cgccatcgga atgggatcga tatcaggaac
     5041 ataatacggg ctgaaatagg cggcgcgttc ggcaagcttg gcgggccagc cgtaattcat
     5101 ggcgaaaaag cccgtccaca ggaacacggc aaacagtccg aacgccataa tgccgaacca
     5161 gttgacaaac gccgccgcgc cgcgcctcag gctgtccagt tgcgccgcgc cgaacagggc
     5221 aagcggcggc agcagccaga cgaggttgtc ctgaaaacgc tgcggattgg cggcgagcag
     5281 caccaaaacg gcaagcatcc acacaacgcc caaaatcccc cagtcggtcg aaaacaggcg
     5341 cgtgcggcaa accgtccaaa ccgccagcgg cagcgcgggc agtgcaaacc aaagcaggtt
     5401 tttcagatag taaaacaaac tgaatgccgt ctgaacgtgc cgcacgccgc cgaacgtacc
     5461 gaaaacgtga tcgtcgagcc attgcgcgaa cagcgcgggc tgcgtttttg ccaagagcag
     5521 cgggtaaacg gtcatcagcg gcagggcaaa ggcaagcgag gcgactgccg tcaacatcaa
     5581 acgcctgctt tgccacggac ggaaaaacat cagcactggc aggggcagca tcagggcaaa
     5641 tgctgccgga taagctgctg ccaacgacat cagcgtccaa cccgtaccga gcagaaaaga
     5701 ggcggcaatc acacggcggc acgccagcga gtagccgtgc agcaccagtc cggcggcggc
     5761 aaaggcggcg gcagcgggat tgagaaagtg tacggtcgga atcagcccga tacagccgat
     5821 aaggattaaa acaacgctgc gcccgtggtg tctgcccaaa aagttgaaac cggcaaagcc
     5881 gcaggaagtc agtccgacaa cggcgaaaaa cacgcctgca aagcgtgcgg catcgtatga
     5941 gtcggcagcc cacggcgaca gcaaatgttt gaacgcggcg gcaacccaaa gatacacggg
     6001 cggtatgccg aaatcggttt gaccgaacag atgggcaacc aagggggtgg ggctgcctgc
     6061 cagtgcttcg acggcggtat agacggcagg ttcggcagga ttccataaat catgtgaaaa
     6121 tacacccggc cacaaccagg caaacgccat caacagcagc agccacggct tttcgtgggt
     6181 tttggcgggc gggcgggcat cgggcggggt ataggtcagc ataagcgtga gaaaaaatgg
     6241 acggattgcc aagtgtagca aatattcgca caaaggtcgt gcagagactg cttcagacgg
     6301 catcagacac aaaaagaccg gcaacaaaaa agactgcaca tggcagtctt tgcagatact
     6361 atctttttca taatattttt tcctagccca acacagtcca tagcatatca aaactgttgt
     6421 tttcaaccag gatatatatc cccaatccta aataaacaac agcaacaaac catctgctat
     6481 atttttccaa agtttctcca acagaaggga cttgtgctaa tttttgggca gaaaaaacca
     6541 agagataaat catgactaga aaggtaagta aagccactat caaattcgct aaatttaagg
     6601 tagtaaaata tgggacaaag acaccaatat tgtcagcacc acaacttgca aaagtaatca
     6661 tagcgactag aaaaatcagg tttttattat ctttgcgcaa accctctttg gcaatagcct
     6721 ctccatcaga atctcctaac agcaaaactt tgatgcctag gaaaattgga atcaagccga
     6781 gcaaacctaa aatctcttta ctaggaatat aatctaagac aaatgcaaaa agcaaactta
     6841 gcaatatcag gctaacagag cctagaaatt gtcctaaata gatgttaatg atgtcttttc
     6901 tgctttttct tttggcaaaa aataacatta ggataataag taagtctacg gctgtcccag
     6961 aatacaggat tattgaagta acaacatttt gaatcataaa acatctcatt caaatatatt
     7021 tttaaatgta ttcaaacatt aaaccttgta gatgtcaact tcaaccccgt ca
//
LOCUS       DAXHNP010000112         7010 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.112, whole genome shotgun sequence.
ACCESSION   DAXHNP010000112 DAXHNP010000000
VERSION     DAXHNP010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7010
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.112"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(76..1497)
                     /locus_tag="ACFM5C_001578"
     CDS             complement(76..1497)
                     /locus_tag="ACFM5C_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HFC6069250.1"
                     /translation="MRHLPLFSLMLFPASVYAADLDGANLNLLWSLPFALILLSIALG
                     PLFFSHTWHHHYGKITAFWTLLFLIPFSLVFGASAGIHTVAHALVEEYIPFILLLLAL
                     YTISGGILVWGDLNGTPKLNTALLAVGTALASIMGTTGAAMLMIRPLLKANQNRTRRV
                     HIVIFFIFLVANIGGGLTPLGDPPLFLGFLKGVDFMWTVKHMFAPVLISTAVLLTAFY
                     FIDNRFFKQESIAQDTPAQQEKPEKIAIFGKWNFLLLSGVVGAVLMSGLWKPEHPGFE
                     ILGSRYALQNLVRDVILIALTAVSMAITPKQVRAGNEFNFEPIAEVGKLFLGIFITIF
                     PVLSILKAGEAGALGGVVSLVHDTAGHPINVMYFWMSGILSAFLDNAPTYLVFFNMAG
                     GDAQALMTGTLFHSLLAVSMGSVFMGALTYIGNAPNFMVKAIAEQRGVPMPTFFGYMM
                     WSVAFLTPVFIVHTLIFFVFKLL"
     gene            complement(1855..2214)
                     /locus_tag="ACFM5C_001579"
     CDS             complement(1855..2214)
                     /locus_tag="ACFM5C_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HFC6069251.1"
                     /translation="MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASP
                     RFHRWLHRHRYFGPMVHNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVS
                     SVFCSLVAIWMWRRPES"
     gene            complement(2211..2816)
                     /locus_tag="ACFM5C_001580"
     CDS             complement(2211..2816)
                     /locus_tag="ACFM5C_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HFC6069252.1"
                     /translation="MTIMNINTSENKDAVAEHTGQWLEKAVIGLNLCPFAKAPHVKNL
                     VRIAISEAKHLDSFLEDLDEELQRLGNTPATELETTLLVHPTLFPDFDVFNDMLDIAD
                     AAVIENGLEGIVQIAPFHPQFRFQNTEPDDIGNYTNRSPYPTLHLIREDSIAKAAQAF
                     PDTSAIFERNIALLEKMGHEGWAKLGITSCPYPHNKKNISK"
     gene            complement(2863..3345)
                     /locus_tag="ACFM5C_001581"
     CDS             complement(2863..3345)
                     /locus_tag="ACFM5C_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HFC6069253.1"
                     /translation="MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK
                     QLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFAL
                     TGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
                     "
     regulatory      3549..3646
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            3856..4956
                     /gene="gcvT"
                     /locus_tag="ACFM5C_001582"
     CDS             3856..4956
                     /gene="gcvT"
                     /locus_tag="ACFM5C_001582"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HFC6069254.1"
                     /translation="MITLKTTPFHQAHQDAGAKPVDFAGWELPIHYGSQIAEHEAVRT
                     DAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLI
                     VYRTNEAETQYRIVSNGATREKDTAQFHKVGQEFGVAFNPRYDLGMLAVQGPKAIEKL
                     LTVKPEWADVIHGLKPFQGADLGNDWFVARTGYTGEDGVEVILPGTEAVAFFKALQAA
                     GVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESRDFVGKAALLA
                     LKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGKGETTSGVFSPSLKQSIAIARVPKDF
                     DGDTAKVLMRGKEVDVRVLKLPFVRNGQKQFD"
     gene            5118..5504
                     /gene="gcvH"
                     /locus_tag="ACFM5C_001583"
     CDS             5118..5504
                     /gene="gcvH"
                     /locus_tag="ACFM5C_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005960 - glycine cleavage complex
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HFC6069255.1"
                     /translation="MSNNIPAELKYVASHEWLRLEEDGTITVGITHHAQELLGDIVFV
                     ELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVVAVNEDLPSAPETANSDSYGAGW
                     FFKIKPVNPADYDGLLTAEQYAGEVD"
     gene            5656..6903
                     /gene="hemA"
                     /locus_tag="ACFM5C_001584"
     CDS             5656..6903
                     /gene="hemA"
                     /locus_tag="ACFM5C_001584"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFC6069256.1"
                     /translation="MQLTAVGLNHQTAPLSIREKLAFAAACLPEAVRNLARSKAATEA
                     VILSTCNRTELYCVGDSEEIIRWLADYHSLPIEEISPYLYTLGMQETVRHAFRVACGL
                     DSMVLGEPQILGQIKDAVRVAQEQESMGKKLNALFQKTFSVAKEVRTDTAVGENSVSM
                     ASASVKLAEQIFPDIGDLNVLFIGAGEMIELVATYFAAKSPRLMTVANRTLARAQELC
                     DKLGVNAEPCLLSDLPAILHDYDVVVSSTASQLPIVGKGMVERALKQRQSMPLFMLDL
                     AVPRDIEAEVGDLNDAYLYTVDDMVNIVQSGKEARQKAAAAAETLVSEKVAEFVRQQQ
                     GRQSVPLIKALRDEGEKARKQVLENAMKQLAKGATAEEVLERLSVQLTNKLLHSPTQT
                     LNKAGEEDKDLVHAVAQIYHLDK"
BASE COUNT         1785 a         1679 c         1966 g         1580 t
ORIGIN      
        1 tgtcggaagg gaaaaatatt gatttgatta tgccggaatt taaaatgccg tctgaatgtt
       61 cagacggcat agcgtttaca gcagtttgaa aacgaaaaag ataagggtat gtacgatgaa
      121 gacgggtgtc aggaaggcga ccgaccacat catatagccg aagaaagtcg gcatcggtac
      181 gccgcgctgt tcggcaatgg ccttgaccat gaagttcggt gcgttgccga tgtaggtcag
      241 tgcgcccatg aataccgaac ccatagaaac cgccagcagc gaatgaaaca gggtacccgt
      301 catcaaggct tgggcatcgc cgcccgccat attgaaaaaa acgagataag tgggcgcgtt
      361 atccaagaat gccgacaata tgccgctcat ccaaaaatac atcacattaa tcggatgacc
      421 tgccgtatcg tgaaccagcg ataccacccc gcccagcgcg cctgcctcgc ctgctttcag
      481 aatgctcagg acgggaaaga tggtgatgaa gatgccgagg aagagtttgc ccacttcggc
      541 gatgggttca aagttgaatt cgttgcctgc gcggacttgt ttgggcgtga ttgccataga
      601 tacggcggtc aatgcaatca ggatgacatc gcggacgagg ttttgcaggg cgtaacggct
      661 gccgaggatt tcaaatcccg ggtgttcggg tttccaaagg ccggacatta gaaccgcgcc
      721 gaccacgccc gaaagcagga ggaagttcca tttgccgaag atggcgattt tttcgggttt
      781 ttcctgttgt gccggcgtat cttgtgcaat gctttcctgt ttgaagaaac ggttgtcgat
      841 gaaatagaag gcggtcaaca ggacagcggt gctgatcagg acgggggcga acatatgttt
      901 gaccgtccac atgaaatcta cgcctttgag gaagccgagg aagagtgggg ggtcgcccaa
      961 aggggtcaga ccgccgccga tgtttgcaac caggaaaatg aagaagatga cgatgtgcac
     1021 gcggcgggta cggttttggt tggctttcag cagcggacga atcatcagca ttgctgcgcc
     1081 ggtcgttccc atgatagagg caagtgccgt accgacggca agcagggcgg tgttgagctt
     1141 gggtgtgccg ttcaagtcgc cccaaaccaa aatgccgcct gaaatggtgt acagggcaag
     1201 cagcagcagg atgaagggga tgtattcttc aacgagtgcg tgtgcgacgg tatggatacc
     1261 ggcggacgcg ccaaaaacca aactgaacgg gatgaggaag agcaatgtcc aaaaggcggt
     1321 gattttgccg taatggtgat gccaggtatg cgaaaaaaac aagggaccca atgcgataga
     1381 cagcaaaatc agggcaaagg gcaggctcca cagcaggttt aggtttgcgc cgtccaaatc
     1441 tgcggcgtaa accgatgcgg ggaaaagcat tagtgaaaac aggggtaggt ggcgcatcgt
     1501 gtttcctcga ttcaagcact gccttgcgcg gcgcgtggga gtgatacagg caccgtgccg
     1561 cccggacata ggcggactgt gctgcctgtt tgtttttgaa aaaagttttc cgattgattg
     1621 taaagtaaat aatcaggata aaccagtttc ccaaaccgga aggcggcggg aaggcggatt
     1681 gctgtgcttg ggaatatatg ttctttttga taaataattt tatttaaaac aaataaatat
     1741 atgtctttaa taaataatct atcgaaaacg aaaaatgaat ttattttaac atatatttgc
     1801 aatgaaacag gtttgccccc cgtttgtttg cccttatccc tttcagtacg gcattcaaga
     1861 ttcgggcctg cgccacatcc atatggcgac aagggaacaa aaaaccgatg aaaccgcccc
     1921 gacccaccag cgttggggaa actgccaaaa cattatcagg caggatgcgg tcatcatact
     1981 gatggcgaat attttggctt tgcgcggcac tgcgccgttt tgttcccagt tatgaaccat
     2041 cggaccgaaa tagcggtgcc ggtgcagcca gcggtgaaag cgcggggatg cctttgccca
     2101 gcaggcggcg gagagcagta cgaacggcgt ggtcggcaac agcggcaaaa aaatgccgat
     2161 gatacccaac agcagggaaa tgcagccgca ggcaattaaa agataacgta tcattttgaa
     2221 atatttttct tattgtgcgg ataagggcag gatgtgatac cgagttttgc ccagccttca
     2281 tgtcccattt tttccagcag ggcgatattg cgttcgaata ttgccgaagt gtcgggaaag
     2341 gcttgtgcgg ctttggcaat gctgtcttcg cggatgaggt gcagcgtcgg atagggagaa
     2401 cggttggtgt agttgccgat gtcgtcgggt tcggtattct gaaagcggaa ttggggatgg
     2461 aacggtgcga tttggacgat gccttccaag ccgttttcga taacggcggc atcggcaata
     2521 tcgagcatat cgttgaatac gtcgaaatcg gggaataggg tcgggtgaac cagcagggtg
     2581 gtttccagtt cggtggcggg tgtattgccc agtcgctgca gttcttcgtc caagtcttcc
     2641 aaaaaactgt caaggtgttt ggcttcgctg attgcgatgc ggacaaggtt tttaacgtgg
     2701 ggggctttgg caaagggaca caggttcaga ccgatgacgg ctttttccaa ccattgtccg
     2761 gtgtgttcgg caacagcatc tttattttcg gaagtattga tattcattat tgtcatgtaa
     2821 atgtgtttgc agattgcacg tgcgggaaaa tcgggaaggg cactattcct tcagcaggtg
     2881 gttgagcggc agggaggtgg tgtgtttgat ttcttttaaa acaaagctcg attgcgcatc
     2941 ttgtacgccg tggtgggaca ggagcgtatc caaaacaaaa tgggaaaacg cgttcatatc
     3001 ggtaaaaaac gcctgaagca ggtagtcggt ttcccctgtc agggcgaagc agctcaagac
     3061 ttcaggccat tttcgaaccg atgcggcaaa gtcttcccgc gcgtcttttg ctttgcggat
     3121 ggaaacgcgg ataaatgcct gaagccccag gttgacggat tccggagaca gcagcgcggc
     3181 atattggcgg acgatgccgg catcttccaa ctgcttcaga cggcgcaggc acggagaagg
     3241 cgaaagtgcg acacgttcgg acagttcgac attggtcagc ctgccgtttt cctggagaac
     3301 ctgtaagatt ttaatatcgg ttttgtctaa agtgagttgg ggcatatttg cgttccgttt
     3361 taaggaattc ggattgtctg tccgtatgtt tgcggcaatc cgcacagatg gagaccatat
     3421 taacatataa aaagttatac cgtcatccgg gacaaatttt gttttcggaa aatcatgtga
     3481 aaacagaggc ggtcggtttg catctctttt aagacggctt gcccaaaccg ccgattcaag
     3541 acataatcgg gaaatgtgca ggagagtgtt acacccaact acaatgtaac caccgaaggc
     3601 gcagacaccc ttaaatcgct caggtatcag ggactgcaca ttgaaacaaa caatctggag
     3661 agcggcgttg gaataacgtc caccgaaggg gagaaggccg tctgaaccac cattcagaca
     3721 accgcgcaaa gcagtgagca gactggtttg ccatcatgcg gatacggccg aaaatctcag
     3781 gttcaaggac agatagggtc atccgcgcat tttgtgcgga cggcatctga acaaaaaatc
     3841 cggagaaact tgagaatgat tactctgaaa accaccccat ttcatcaagc ccatcaagat
     3901 gcaggcgcga agccggtaga ttttgccggc tgggagctgc ccatccatta tggttcgcaa
     3961 atcgccgaac acgaagccgt gcgcaccgac gccggtatgt ttgacgtatc ccatatgctt
     4021 gttaccgacg tagcaggcgc aaatgccaaa gcctttttcc gcaaattgat tgccaacgat
     4081 gtcgccaagc tcgcttttgt cggcaaagcc ctttattccg ctttgctcaa cgacaacggc
     4141 ggcgtgattg acgacttaat cgtttaccgc accaacgaag ccgaaaccca ataccgcatc
     4201 gtgtccaacg gagcgactcg cgaaaaagac acggcgcaat tccacaaagt cggacaagag
     4261 ttcggcgttg cctttaatcc gcgctacgac ctcggcatgc tcgccgtaca aggccctaaa
     4321 gccatcgaaa aactcctgac cgtcaaacct gaatgggcgg atgtgattca cggcctcaaa
     4381 ccgttccaag gtgcagactt gggcaacgat tggtttgtcg cccgcaccgg ctataccggc
     4441 gaagacggcg tcgaagtgat tctgccgggc actgaagccg tcgcattctt caaagccctg
     4501 caagcagcag gcgtacaacc ttgcggtctc ggcgcgcgcg acaccctgcg catggaagcc
     4561 ggcatgaacc tctacggcaa cgatatggac gacgatacca gcccgctcga agcaggcatg
     4621 ggttggaccg ttgatttgaa agacgaaagc cgcgattttg tcggcaaagc tgccttgttg
     4681 gcattgaaag aaaaaggcgt tgccgtcaaa caggtcggtt tgctgctcgg caaaggcggc
     4741 atcctgcgcg cgcatatgga agtgttgacc gacaaaggca aaggcgaaac caccagcggc
     4801 gtattctcgc ccagcctgaa acaatccatc gccatcgccc gcgtaccgaa agactttgac
     4861 ggcgataccg ctaaagtgct gatgcgtggc aaggaagtgg acgtgcgcgt attgaagttg
     4921 ccgttcgtgc gtaacggtca aaaacagttt gattaatatc ggttcagacg gcattttcat
     4981 ttcatatgcc gtctgaaagc aggttttaat tgttgtccga tacggacgtt tgtagaaagc
     5041 attgaacaag gcatctgtgg atattgattc atgcagatgc cgtctgaaaa taacccctat
     5101 caatggagta tcaaaccatg agcaacaaca tcccggccga actgaaatac gttgccagcc
     5161 atgaatggct gcgccttgaa gaagacggta cgattaccgt cggcattacc caccacgcgc
     5221 aagagctgtt gggcgacatc gtgttcgtcg agctgcccga agtcggcgcg aaccttgccg
     5281 ctgaagagca agccggtgtg gttgagtctg taaaagccgc gtccgacgtg tacgcaccga
     5341 ttgcaggcga agtcgttgcc gtcaacgaag atttgccaag tgctccggaa actgccaaca
     5401 gcgattctta cggcgcaggc tggttcttca aaatcaaacc tgtcaatcct gccgattacg
     5461 acggtctgct gactgccgaa caatacgcgg gcgaagtgga ttaaaccgcc cggctgcccg
     5521 acggcaaccg ccggacaaac ggaaactgca ccttcagacg gcatttttgc ggtcggaggt
     5581 gcagtttttt gtccgtgttt taaggaagca gttaggctat aataacggcc tatattcatc
     5641 tttaccgatt ttttcatgca acttaccgct gtcggactca atcatcaaac cgcaccttta
     5701 agcatacggg aaaagctggc gtttgccgcg gcctgcctgc ccgaagccgt ccgcaatctt
     5761 gcccgaagca aggcggcaac ggaggcggta atcctttcta cctgcaaccg caccgagctt
     5821 tactgtgtag gcgattcgga agaaatcatc cgttggctcg cagactatca cagccttccc
     5881 atagaagaaa tcagccccta cctttatact ttggggatgc aggagactgt gcgccatgcc
     5941 ttccgcgttg cctgcggctt ggattcgatg gtgttgggcg agccgcagat tttaggacag
     6001 attaaggatg cggtcagggt tgctcaagag caggaaagta tgggtaagaa actcaatgcc
     6061 ctgttccaaa aaaccttttc tgttgctaaa gaggtccgta ccgatactgc cgtcggcgaa
     6121 aactcggttt ccatggcttc cgcttccgtc aaattggcgg aacagatttt tcccgacatc
     6181 ggcgatttga atgtcttgtt tatcggcgca ggcgaaatga ttgagctggt tgccacttat
     6241 tttgccgcca aaagtccccg gctgatgacg gttgccaacc ggacgctggc gcgtgcacag
     6301 gagttgtgcg acaagctcgg tgtcaacgcc gaaccgtgcc tgctgtccga tctgcctgct
     6361 attctgcacg attacgacgt ggtggtttct tcaacggcga gccagcttcc gatagtcggc
     6421 aaaggcatgg tcgaacgtgc attgaaacag cgtcagagta tgccgttgtt tatgcttgat
     6481 ttggccgtgc cgcgcgatat tgaagcggaa gtcggcgatt tgaacgatgc ctatctttat
     6541 acggtggacg atatggtcaa catcgtccaa agcggcaagg aggcaaggca gaaggccgcc
     6601 gccgccgccg aaacgctggt atccgagaag gttgccgaat ttgtcaggca gcagcagggc
     6661 aggcagagcg tccccttgat taaagccttg cgggacgagg gcgagaaagc gcgcaagcag
     6721 gtgttggaaa atgcgatgaa acagcttgcc aaaggcgcaa cggcagaaga ggttttggaa
     6781 cggctgtccg tccaactgac caacaagctg ctgcattcgc cgacccaaac tttgaataag
     6841 gcgggggaag aagataaaga tttggttcat gccgtcgcgc agatttatca tttggacaaa
     6901 taacggtgcg ccgggaaaaa tgccgtctga agaggtttca gacggcattt ttttgtgccg
     6961 cctgacaaca tcgtgaaatc ccacattata tcgatgtaat cacaaagtat
//
LOCUS       DAXHNP010000113         6911 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.113, whole genome shotgun sequence.
ACCESSION   DAXHNP010000113 DAXHNP010000000
VERSION     DAXHNP010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6911
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.113"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..216)
                     /locus_tag="ACFM5C_001585"
     CDS             complement(<1..216)
                     /locus_tag="ACFM5C_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6069257.1"
                     /translation="MLRFFVLEVTARSAADILGIHPNSAALFYRKIRMVINHHLALAA
                     DEVFEGSVEPDESDFGGRRKGRRGRGAA"
     gene            317..817
                     /locus_tag="ACFM5C_001586"
                     /pseudo
     CDS             317..817
                     /locus_tag="ACFM5C_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714696.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
     gene            820..903
                     /locus_tag="ACFM5C_001587"
                     /pseudo
     CDS             820..903
                     /locus_tag="ACFM5C_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222119.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            1184..1618
                     /locus_tag="ACFM5C_001588"
     CDS             1184..1618
                     /locus_tag="ACFM5C_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069258.1"
                     /translation="MCGLWLLRALTAKLPQQRYAALFITLFFAAVLVFGRRDSMYWYP
                     VLVNLMMLAVFGGSLFAGQTVIERLARLQQPDLPEKAVRYTRRVTQVWCVFFIINGTL
                     AALLARLGRYDWWAVYTGVIAYVLMGMLFAGEWLYRKLVLKV"
     gene            1625..2140
                     /locus_tag="ACFM5C_001589"
     CDS             1625..2140
                     /locus_tag="ACFM5C_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2199 domain-containing protein"
                     /protein_id="HFC6069259.1"
                     /translation="MHTCTSCGENHEEMPAIGFTAPYPYNQLSEEERIAYQAECDSDF
                     CIIRYPDQTDRFIRAVLSIPIIGHEETLEYGVWVSVSEKSFNDYQSRFYDNPENVVYF
                     GMICNWLPPYESDTFGLHCNVVTQPDGQRPLLQLHQGGEHPLVRDFYHGIEYAEAQAR
                     IGAVSESDCSG"
     gene            2160..3638
                     /gene="ubiD"
                     /locus_tag="ACFM5C_001590"
     CDS             2160..3638
                     /gene="ubiD"
                     /locus_tag="ACFM5C_001590"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HFC6069260.1"
                     /translation="MKYKDLRDFIAMLEQQGKLKRVAHPVSPHLEMTEIADRVLRAEG
                     PALLFENPVKPDGTRYDYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEP
                     PKGIKDAFSKLPLLKDIWSMAPNVVKNAPCQEIVWEGEDVDLYKLPIQHCWPEDVAPL
                     VTWGLTVTRGPHKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEFRKLNPDTPYP
                     VAVVLGCDPATILGAVTPVPDTLSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLE
                     GVIHPNETALEGPYGDHTGYYNEQDHFPVFTVERITMRENPIYHSTYTGKPPDEPAVL
                     GVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLR
                     QFMYTKFIIVVDDDVDVRDWKEVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLG
                     GKMGLDATNKWPGETDREWGRVIKKDPAVTAKIDGIWEELGL"
     gene            complement(3702..5816)
                     /locus_tag="ACFM5C_001591"
     CDS             complement(3702..5816)
                     /locus_tag="ACFM5C_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HFC6069261.1"
                     /translation="MDLLSVFHKYRLKYAVAVLTILLLAAVGLHASVYRTFTPENIRS
                     RLQQSIAHTHRKISFDADIQRRLLPRPTVILKNLTITEPGGDQTAVSVQETKIGLSWK
                     NLWSDQIQIEKWVVSSAELALTRDGKGVWNIQDLIDSQKRQASVNRIIVENSTVRLNF
                     LQEQLILKEINLNLQSPDSSGQPFESSGILVWGKLSVPWKSRGLFLSDGIGTPKISPF
                     HFEASTSLDGHGITISTTGSPSVRFNAGGADAAGLGLRADTSFRNLHLTAQIPTLALR
                     NNSIKIETVNGAFTAGGEYAQWDGSFKLDKANLHSGIANIGNAEISGSFKTPRHQTNF
                     SLNSPLVWTENKGLDAPRLYVSTLQDTVNRLPQPRFISRLDGSLSVPNLQNWNAELNG
                     TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSGDI
                     EAHLKIGKVQLPGLQLDDMETYLHADKGHIALSRFKSGLYGGHTEGGISIANTRPATY
                     RLQQNASNIQIQPLLQDLFGFHSFSGNGDAVIDLTASGETRKELIRSLQGSLSLNISN
                     GAWHGIDMDNILKNGISGKTADNAAPSTPFHRFTLNSEISDGISRHIDTELFSDSLYV
                     TSNGYTNLDTQELSEDVLIRNAVHPKNKPIPLKITGTVDKPSITVDYGRLTGGINSRK
                     EKQKILEDTLLEQWQWLKPKEP"
     gene            5907..6800
                     /locus_tag="ACFM5C_001592"
     CDS             5907..6800
                     /locus_tag="ACFM5C_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HFC6069262.1"
                     /translation="MIIVMSRRAAEADIAGVVAFIRSRGLREHISHGDERTVIGAIGD
                     DRVLSVREVQTLPEVEKAVRILDTWKTVSRENRAEDSRVAAKGVAFGGGETVCIAAEP
                     SVWRNADAVFLDPFFTSANLYDTSSADEGRGRCRRLAEQTASAHGAGKPVLVRVRNVR
                     HVEAALNAGADILYLGGGLMSDLAVLNEAGSLNIPLVLCKDKHHSAEDWLNAAEYVVS
                     RGNRHLILGESGVLSHTKDHPYRLDVESIVKVRQISHLPVIANITGLWNRDMPQEILY
                     GLAKAAGACGIVGTCFEKSGG"
BASE COUNT         1481 a         1698 c         2079 g         1653 t
ORIGIN      
        1 tgccgcaccg cgaccacgtc tgcctttacg ccgtccgccg aaatcgcttt cgtccggctc
       61 gacagagccc tcaaaaacct catcggcagc caaggccaaa tgatggttga taaccatgcg
      121 gattttacgg tagaacagtg ctgccgaatt gggatggata cccaaaatat cggcggcaga
      181 acgggcggta acttcgagta caaaaaaacg gagcagttct ttctgtactt ttttctttca
      241 tttgcagtgc gttatcttca tatttcgagg gtaacatatc tgctaatcta gtacagcccc
      301 taaaatttaa tccactatag tttatgcctc gcacgacggg gaaatggcgc gcagtttcga
      361 tttgtggttg gaactgttga aatcgcaaat cgtgtcgccg acttcgttcg gtttgtcggt
      421 gcacaatgca acggcggggt aatggtcgat attgaggcgg gatatgagcg agcagacggc
      481 attggccgtg tgtgccgacg gtgtggaaac ggcattggcg gaagcggcat cactgttgga
      541 agagggatgc gggtcggttt tggttttggc ggcggacgat ccgctgccgg aaggatatgc
      601 cgtatcggca acgcgcgcgc cgtttgctta tgctttggcg atggttctga ccaaagggac
      661 gcgttacagt ctgactttat ctgcttcgga cgatatgccg tctgaagccg gtatgctgcc
      721 cgaggcatat tggagcggtt tggaatgggt gcgctttctg ctgaacggca gtcgggaatg
      781 ccgccgggta tatcgcaatc gtgaatggct gtggcagccc gcaagctgca ggctgaagat
      841 ttccgcaatg tccgcaccgt caacgacgtg gtacaggcgg tattgaagat tcaggcgggc
      901 taatcgggta tttctaatta tttttcagac ggcatgtttt tatcggatgc cgtctgaaaa
      961 catttgtgcg gattcaaaat gaaacccggt tttttcggac atatttttct gaccgtatta
     1021 agcattgcct atcccgcttt gtggtatagt ggattaacaa aaatcaggac aaggcgacga
     1081 agccgcagac agtacggcaa ggcgaggcaa cgctgtactg gtttttgtta atccactata
     1141 ttacggcagg gaggcgggct ggtttgtctg gctggcggcg gcgatgtgcg ggttgtggct
     1201 gctgcgcgcc ctgactgcca aactgcccca acagcgttat gcggctttgt ttattacact
     1261 gttttttgcc gcagtattgg tgttcgggcg gcgcgactca atgtattggt atcccgtcct
     1321 cgtcaatctg atgatgttgg cggtgttcgg cggcagcctg tttgccggac agacggtcat
     1381 agaaaggctc gcgcggctgc aacagcccga cctgcctgaa aaagccgtgc gctatacccg
     1441 ccgggtaacg caggtttggt gcgtattttt tataatcaac gggacgcttg ccgctttgtt
     1501 ggcccggttg gggcggtatg attggtgggc ggtttatacc ggcgtgattg cctatgtatt
     1561 gatggggatg ctgtttgccg gcgaatggct ttaccgcaaa ctcgttttga aagtctgaaa
     1621 ccttatgcac acttgcactt cctgcggcga aaaccacgaa gaaatgcccg caatcggctt
     1681 taccgccccc tatccctata accaactcag tgaagaagaa cgcattgctt atcaagcgga
     1741 atgcgattct gatttctgca tcatccgcta tcccgaccaa accgaccgtt ttatccgcgc
     1801 ggtgctgtct attccgatta tcgggcatga ggaaacgttg gaatacggcg tgtgggtgtc
     1861 cgtcagcgaa aagagtttta acgactatca aagccgcttt tacgacaacc ctgaaaacgt
     1921 cgtttatttc ggcatgatct gcaactggct gcccccttac gaatccgaca ccttcggttt
     1981 gcattgcaat gtcgttaccc aacccgatgg ccaacgtcct ttgctacaac ttcatcaagg
     2041 cggcgaacat ccgctggtac gcgactttta tcacggcata gaatatgccg aagcgcaggc
     2101 aaggataggg gcggtatccg aatcggattg ttcaggataa aaggacaaaa aggataaata
     2161 tgaaatacaa agacctgcgc gacttcatcg ctatgctcga gcagcagggc aagctcaaac
     2221 gcgtcgcgca ccccgtttcc ccgcatttgg aaatgaccga aatcgccgac cgcgtgctgc
     2281 gtgccgaagg gccggcgttg ctgtttgaaa acccggttaa gcccgacggt acgcgttacg
     2341 attatcccgt gttggcaaac ctgttcggta cgcccgaacg tgtggcgatg ggcatgggcg
     2401 cggacagcgt gtccaagctg cgcgaaatcg ggcagacgct ggcgtatctg aaagaacccg
     2461 aaccgcccaa aggcatcaaa gacgcgtttt ccaaactgcc gctcttgaaa gatatttgga
     2521 gcatggcgcc gaacgtagtg aaaaacgcgc cgtgtcagga aatcgtgtgg gaaggcgaag
     2581 acgttgattt gtataaactt ccgattcagc attgctggcc ggaagacgtt gcgccactgg
     2641 taacgtgggg cttgaccgtc acgcgcgggc cgcacaaaaa acgccaaaat ctcggcattt
     2701 accgtcagca attaatcggc aaaaacaagc tgatcatgcg ctggctgtcg caccgcggcg
     2761 gcgcgctgga ttatcaggaa ttccgcaaac tcaatcccga tacaccgtat cccgtcgccg
     2821 tcgtgctcgg ctgcgacccc gccactattt tgggcgcggt aacgcccgtt cccgatacct
     2881 tgagcgaata ccagtttgcc ggactgctgc gcggttcgcg gacggagctg gtgaaatgta
     2941 tcggcaacga tttgcaagtg cctgcccgtg ccgaaatcgt gttggaaggt gtgattcatc
     3001 cgaacgagac cgcgttggaa ggtccatacg gcgaccacac gggctattac aacgagcagg
     3061 atcatttccc tgtgtttacg gtcgaacgca tcaccatgcg agaaaacccg atttaccact
     3121 ctacctacac aggcaaaccg cccgatgaac ccgccgtttt gggcgtggcg ttgaacgaag
     3181 tgttcgtacc gcttttgcaa aagcagttcc ccgaaatcac cgatttttac ctgccgcccg
     3241 aaggctgttc ctaccgcatg gcggtggtca gcatgaaaaa acagtacgcc ggccacgcca
     3301 agcgcgtgat gatgggctgc tggtcgttct tgcgccagtt tatgtacacc aaattcatca
     3361 tcgtggtgga tgacgatgtg gacgtgcgcg actggaaaga agtcatctgg gcggtaacca
     3421 cgcgcatgga tcccgtgcgc gataccgttt tagtggaaaa cacgcccatc gattatcttg
     3481 acttcgccag ccccgtcagc ggactcggcg gcaaaatggg tttggatgcg accaacaaat
     3541 ggccgggaga aaccgaccgc gaatggggac gcgtcatcaa aaaagaccct gcggttacgg
     3601 ctaagattga tgggatttgg gaggaattgg ggttgtaggt tttacggtct gccgtctgaa
     3661 gcgcgggggc gtttcagacg gcatttttgt acgcaggatg tttacggttc tttaggtttg
     3721 agccactgcc attgttccag cagggtgtct tcgaggattt tctgtttctc tttgcgcgaa
     3781 ttgatgccgc cggtcagcct gccgtaatcg acggtaatgg acggcttgtc caccgtaccg
     3841 gtgattttca ggggaatcgg tttgtttttc ggatggacgg cgttgcggat aaggacatct
     3901 tcagacaatt cctgcgtatc cagattggta tagccgttgc tggtaacata gaggctgtcg
     3961 gagaagagtt cggtatcgat gtggcggctg atgccgtctg aaatttcgct gttgagcgtg
     4021 aatcggtgga agggtgtgct gggtgcggca ttgtcggcag ttttgcccga aatgccgttt
     4081 ttcaggatat tgtccatgtc gataccgtgc catgcaccgt tggaaatatt cagcgacagg
     4141 ctgccctgaa gcgagcggat aagctctttt cgggtttcgc cgctcgcggt caggtcgatg
     4201 accgcatcgc cgttgccgct gaagctgtgg aagccgaaca ggtcttgcag cagcggttgg
     4261 atttggatgt tgcttgcatt ctgttgcagg cggtaagtgg cgggacgggt gttggcgatg
     4321 ctgatgccgc cttcggtatg gccgccgtaa agccctgact tgaaacggct gagcgcgata
     4381 tggcctttgt cggcgtggag gtaggtttcc atatcgtcca gttgcaggcc gggaagttgg
     4441 acttttccga ttttcaggtg cgcctcgatg tcgccggaca gcttggcgag ggtgtcggga
     4501 aatattttgc cgttttgttg ccgcacgtcg tcaagatagg gggtcaggtt caatttttgc
     4561 agtgcgacgg cggcttccag atgcggtgcg tcttcatgtg tgtatctgaa tttcgcggca
     4621 acggtttggc ggtcgaatgt gccgtttaat tcggcattcc aattttgcag attcggtacg
     4681 gacagcgaac cgtcgagccg gctgatgaaa cggggttgcg gcaggcggtt gacggtatcc
     4741 tgaagggtcg atacatacag gcgcggcgcg tccagccctt tgttttccgt ccatacgagc
     4801 ggcgaattga gggagaagtt ggtctggtgg cgcggtgttt tgaagctgcc ggagatttcg
     4861 gcgttgccga tgttggcgat gccggagtga aggttggctt tgtcgagttt gaacgaaccg
     4921 tcccattggg catattcgcc gccggcggta aatgcgccgt tgacggtttc aattttaatg
     4981 ctgttatttc tgagtgccag cgtagggatt tgggcggtca ggtggaggtt gcggaaggaa
     5041 gtgtctgcac gcaggccgag gccggcggca tccgctccgc cggcgttgaa gcggacagaa
     5101 gggctgccgg tggtggaaat ggtaatgccg tgtccgtcca gcgaagtgga agcttcaaaa
     5161 tggaacggtg agattttggg cgtgccgatg ccgtctgaaa ggaacagccc cctgcttttc
     5221 cacgggacgg acagctttcc ccaaaccagt atgcccgaac tttcaaacgg ctgccccgac
     5281 gaatcggggg attgcaggtt gaggttgatt tccttcagga taagctgttc ctgcaggaaa
     5341 ttgaggcgga cggtgctgtt ttcgacgata atgcggttga ctgaggcttg gcgtttttgg
     5401 ctgtcgatca ggtcttggat gttccaaaca cctttcccgt cgcgcgtcag ggcaagttcc
     5461 gcactcgaaa ccacccattt ttcaatctgt atctgatccg accacaggtt tttccagctc
     5521 aatccgattt tggtttcttg gacggaaacg gcagtctggt cgccgccggg ttcggtaatg
     5581 gtcaggtttt tcaggatgac ggtcggccgg ggcaggagcc tgcgctgaat gtccgcatca
     5641 aacgagattt tccggtgtgt gtgtgcaatg ctttgttgga ggcggctgcg gatgttttca
     5701 ggcgtgaagg tgcgatatac ggaagcgtgc agcccgactg ccgccaaaag cagtatcgtc
     5761 agcacggcca ccgcatattt cagacggtat ttgtggaaaa ccgataataa atccatagcc
     5821 cgaacaatct gtaaaacacg ccacagtata acacggcttg caaaaatcct attttgggca
     5881 ggccgtttct tgtgtcagga ggaaatatga ttattgtcat gagcaggcgt gccgccgaag
     5941 cggacattgc cggcgttgtc gcctttatcc gcagcagagg tctgcgagaa cacatttctc
     6001 acggcgacga gcgtaccgtc atcggcgcaa tcggcgacga tagggttttg agcgtcaggg
     6061 aggtgcagac gctgccggag gtcgagaaag ccgtccgcat tttggataca tggaaaaccg
     6121 tcagtcggga aaatcgggcg gaagacagcc gcgttgccgc caaaggcgtg gctttcggcg
     6181 gcggggaaac cgtctgtatc gccgcagaac cgtcagtatg gcgcaatgcg gatgcagtgt
     6241 ttctggatcc gtttttcact tcggcaaact tatacgacac ttcaagtgcg gatgaagggc
     6301 gaggacggtg cagacggttg gcggaacaga ccgcatcggc gcatggcgca gggaaacccg
     6361 tattggtgcg cgtccgcaac gtccgccatg tcgaagcggc tttgaatgcg ggggcggaca
     6421 tcctgtattt gggcggcggg ctgatgtccg atcttgccgt attgaatgaa gccggaagcc
     6481 tgaacattcc cttggtgctg tgtaaagaca agcaccattc tgccgaagat tggttgaatg
     6541 ccgcagaata tgtcgtctcg cgcggcaacc gccacctgat tctgggcgag tcgggcgtgt
     6601 tgagccatac caaagaccat ccctaccgtt tggatgtcga atccatcgtg aaagtccgcc
     6661 aaatcagcca tctgcccgtg attgcgaata ttacgggatt atggaaccgc gatatgccgc
     6721 aggaaatcct gtacggcttg gcaaaggcgg caggcgcgtg cggaatcgtc ggaacctgtt
     6781 ttgaaaagtc gggcggatag caggcatacc ggcagattca aaggcggagc agacattcgg
     6841 acaacatgcc gtctgccgcc cgaatagcgg tgccgtctga agcgcacaag acggtttcag
     6901 acggcatata a
//
LOCUS       DAXHNP010000114         6716 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.114, whole genome shotgun sequence.
ACCESSION   DAXHNP010000114 DAXHNP010000000
VERSION     DAXHNP010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6716
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.114"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            18..1409
                     /locus_tag="ACFM5C_001593"
     CDS             18..1409
                     /locus_tag="ACFM5C_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6069263.1"
                     /translation="MQVFLDNLKAFFETVSGWVWGSVMLMLLVGTGIVLTVMLKGLQF
                     TMLGYALKQAFVPSKKYEGGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
                     GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIEKGLGKNWKWMAVA
                     FALFGTFASFGIGSSVQSNSVAQAVQTSFGIEPAYTGITLTVLTAVVVLGGIKGIAKA
                     ASFIVPAMAVFYVLGGLSIIAINSDALMPAVKLIFSDAFSAQAVAGGAIGTVIRYGVA
                     RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIVLVMGLLGA
                     GGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
                     GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
                     DFKQKITNGELPH"
     gene            1488..2744
                     /locus_tag="ACFM5C_001594"
     CDS             1488..2744
                     /locus_tag="ACFM5C_001594"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HFC6069264.1"
                     /translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAKGVAMETSFANA
                     GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWRMLQNCTAAHYQ
                     TNKERMVRISEYSREMFRRFEAQTGMNFEGRKKGTLQIFRQAKEVEAAEQDIAVLERY
                     GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCRLFTENLYKLCQEKGVRF
                     HFNQTISRIDHNGLRIKTVETETGRFEADAVVCALGCFSRTVLAQLDLNLPIYPVKGY
                     SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
                     VVNDLFPEGGDLSQASFWSGLRPMTPDSTPLIGRTRFDNLFLNTGHGTLGWTMSLGSA
                     KLTADIVSGKDTEIRSDDLSLSRYQA"
     gene            2925..3734
                     /gene="zupT"
                     /locus_tag="ACFM5C_001595"
     CDS             2925..3734
                     /gene="zupT"
                     /locus_tag="ACFM5C_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFC6069265.1"
                     /translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
                     LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
                     HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
                     IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGATLGYLVLQPFLSPAVFG
                     SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVIAVSLVLFHF"
     gene            3831..6668
                     /locus_tag="ACFM5C_001596"
     CDS             3831..6668
                     /locus_tag="ACFM5C_001596"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFC6069266.1"
                     /translation="MLDKYSPAEIESKHYQNWESQGYFQPDMDLTKPSFSIQLPPPNV
                     TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
                     NLDREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLY
                     EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
                     ETLLGDVAVAVNPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAH
                     DFNDYEVGKRHDTRLVNVFDLEAKVLANAEVFNFKGEAQPSFAMPEKYAGLDRFAARK
                     QMVADLQEQGFLVEIKAHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
                     GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDEAG
                     NVYVARNQVEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
                     LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
                     IDGIGLEKLLVKRTTGLRKPETAPKVEEATKKLFPEGIPSMGADALRFTMASYASLGR
                     SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATAAEPRGYSFPDMWIVGRL
                     NQTIEQVTQAYETYRFDLAAETLYSFVWNDYCDWYLELAKVQLQTGCASRQRATRHTL
                     LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPEADGGDIVQTAFGQ
                     MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESADDLADYLKYLPMMTRLTEAQQVATL
                     PESEDAPVAVCNGARLMLKVEIDKATETARLSKEAEKLQKALDKLNAKLSKPGYTEKA
                     PAHLVEKDKADLAELEDKMAKVQTQLSKLKD"
BASE COUNT         1586 a         1818 c         1800 g         1512 t
ORIGIN      
        1 agacaaagga gaaagccatg caagtgtttt tagacaatct caaagccttt ttcgaaaccg
       61 tcagcggctg ggtctgggga tctgttatgt tgatgctgct ggtcggcacc ggcattgtgc
      121 tgaccgttat gctgaaaggc ttgcagttca ctatgttggg ctatgcgctg aaacaggcat
      181 ttgtgccgtc aaagaagtat gaaggcggcg aaggccacga aggcgatatt tcccatttcg
      241 cggcgttgat gaccgcgctg tccgccacca tcggtacggg taacatcgcc ggcgtggcga
      301 ctgcggtggt aaccggcggc ccgggcgcgg tattttggat gtggatgacc gccattttcg
      361 gcatggccac caaatacggc gaaggcgtgt tggcggtgaa ataccgcgtc aacaattcca
      421 aaggcgaaat gtccggcggc ccgatgtatt acatcgaaaa aggcttgggc aaaaactgga
      481 aatggatggc cgtcgcgttt gcgctgttcg gcacattcgc ttccttcggt atcggcagct
      541 cggtgcagtc caactcggtt gcacaggcgg tgcaaaccag cttcggtatc gaacctgcct
      601 ataccggcat tacgttgacc gttctgactg ccgttgtcgt tttaggtggt attaaaggca
      661 tcgccaaagc cgcttctttc atcgtgcctg ctatggcggt gttttatgtg ttgggcggtc
      721 tttccattat cgcgattaat tccgatgcac tgatgcctgc cgtcaagctg attttctccg
      781 atgcgttcag cgcgcaggca gtggcgggcg gcgctatcgg tacggtcatc cgctacggcg
      841 tggcgcgcgg cgtgttctcc aatgaggcgg gtatgggttc tgcgcctatt gccgccgcag
      901 ccgcgaaaac cgaccatccc gtccgtcagg ccttggtttc tatgaccggt acgtttttgg
      961 ataccatcgt cgtttgctcg attaccggca tcgtgttggt aatgggactg ctcggcgcgg
     1021 gcggcgagtt tgtcaaacct gaagtgagcg gcgcggcact gacaaccgtc acattccaaa
     1081 aaatgctgcc cggcatcggc ggctggattg ttaccatcgg cctgattttc tttgcctact
     1141 caaccatttt gggctggtgc tattacggcg aaaaatgcgc ggtgtatgtt ttcggcgaga
     1201 aatttgccgg tttgtaccgc gtgggttatg tttcttccgt tatgctgggt accgtgttga
     1261 gccttgattt ggtgtggctg gcttcggaca cattcaacgg cttgatggca ttgcccaacc
     1321 tgattgcact tttattgatg gcgaaagtca tcgtcaatga aacgcgcgac ttcaaacaaa
     1381 aaatcacaaa cggcgaattg ccgcattaat atccgaggcc gtctgaatcc gaatattcag
     1441 acggcacggc atattaagtc tgttttgaaa aagtcggagg gagaaacatg aaagtgcttg
     1501 ttttaggtgc gggtgttgcc ggcgtgtctt ccgcgtggta tctggcagag gccggacatg
     1561 aagtaacggt catcgaccgc gccaagggtg tggcgatgga aaccagtttt gccaatgcag
     1621 gccagctttc ttacggctat accacgcctt gggctgcacc cggtattccg accaaagcac
     1681 tgaaatggct gtttaaaagc catccgcctt tgctgtttcg ccccgacggc agcctgtatc
     1741 aaatcgaatg gctgtggcgg atgctgcaaa actgcacggc agcgcactat caaaccaata
     1801 aagagcgcat ggtcaggatt tccgaataca gccgtgaaat gttccgccgt tttgaagcgc
     1861 aaaccggcat gaattttgaa gggcgcaaaa aagggacgtt gcagattttc cgtcaggcta
     1921 aagaagttga agctgcagaa caagacattg ccgttttgga acgctacggc gtgccgtacc
     1981 gccgtctgaa gcccgaagaa tgcgcagaat tcgagcctgc gctggcacgc gttaccgcca
     2041 aaattgccgg cggcctgcac ctgcctgcgg atgcaaccgg cgactgccgc ctcttcactg
     2101 aaaacctata caaattgtgt caggaaaagg gcgtacggtt tcatttcaac caaaccatca
     2161 gccgcatcga ccacaacggg ctgcgcatca aaaccgttga aaccgaaaca gggcggtttg
     2221 aagcagatgc cgttgtctgc gcgctcggtt gtttcagcag gacggttttg gcgcagttgg
     2281 atctcaatct gcccatttat cccgtcaaag gctattcctt gaccctgccg gtcacaaatt
     2341 ccgacggcgc accggtgtcc accgttttag atgaaagcta caaagtcgcc atcacgcgct
     2401 ttgacaacag aatccgcgtc ggcggtatgg cggaattgtc gggctacgaa atcaaactgc
     2461 ccgaaaaacg ccgcgaaacc ttggctttgg tcgtcaacga cttgttcccg gaaggcggcg
     2521 atttgagcca agcatcgttc tggagcggcc tcaggccgat gacgcccgac agcacgccgt
     2581 taatcggtcg cacccgcttt gacaacctgt ttctgaatac cggccacggt actttaggct
     2641 ggaccatgtc gctgggttcg gcaaaattaa ccgccgatat cgtgagcggc aaagacaccg
     2701 aaatccgcag cgacgatttg agcctgtcgc gttatcaggc ttaagctgga aagcgataag
     2761 gtttagcggc atttcaaatt taaaggccgt ctgaaaatca tttttcagac ggccttttgt
     2821 ttcaaaatcc gtgtatccaa tcaataaaat aaataataac tattatcata tacattaaaa
     2881 agtgttagtc tgaacctgtc ccagctttta gcgcaggttt tctcatgccc gatttttcga
     2941 tgtccaattt ggccgttgcc ttttccatca cattggctgc cggtttgttt accgtattag
     3001 gcagtggctt ggtgatgttt tccaaaacgc ccaatccgcg tgtgttgtcg tttggtttgg
     3061 cgtttgccgg cggtgcgatg gtatatgttt ccctgacgga gattttcagt aagtccagcg
     3121 aggcgttcgc tgaaatttat gataaagacc acgcgtttgc ggcggcgacc atggcatttt
     3181 tggccgggat gggcggcatt gcgctgattg accgtctggt gccgaacccg catgaaactt
     3241 tagacgcgca agacccgtcg tttcaagaaa gcaaacgccg ccatatcgcg cgagtcggca
     3301 tgatggcggc gtttgcgatt actgcgcaca atttccccga aggcttggcg acgttttttg
     3361 ccacattgga aaatccagca gtcgggatgc ctttggcctt ggcgattgcc atccataata
     3421 ttccggaggg catttccatc gccgcgccgg tttattttgc cacccgcagc cgtaagaaaa
     3481 cggtgtgggc gtgtctgcta tccggcttgg ccgagccgtt gggggcgact ttgggctatt
     3541 tggttttgca gccgtttttg tcgcctgccg tgtttggttc ggtattcggc gtgatagccg
     3601 gtgtgatggt gtttttggcg ttggacgagc tgctgccggc tgccaaacgc tattcagacg
     3661 gccatgaaac cgtttacggc ctgacaatgg gcatggcggt gattgccgtc agcctggtat
     3721 tgttccattt ttaaaacctg tatgccaaag gccgtctgaa atgattcaga cggccttttt
     3781 gcgttataat ccgcacatca aaaataacct taatttcaca aagttccatc atgttagaca
     3841 aatactcccc cgccgaaatc gaatccaagc actatcaaaa ctgggaaagc caaggctatt
     3901 tccaacctga tatggatttg accaaaccgt ctttttccat ccaactgccg ccgcccaatg
     3961 taaccggcac gctgcacatg ggtcatgcct tcaaccaaac cattatggac ggcctgaccc
     4021 gctactaccg tatgaaaggc tgcaacaccg cctggattcc cggcaccgac cacgcgggca
     4081 tcgccacgca aatcgtggtc gagcgtcagc ttgccgcgca aaacgtgtcc cgtcataact
     4141 tggatcgtga aaaattcttg gaaaaagtgt gggaatggaa agaagtttcc ggcggcacga
     4201 ttacgcagca gatgcgccgt gtgggctgtt ctgccgactg gacgcgcgag tatttcacaa
     4261 tggacgatgt acgcgccgaa accgtaaccg aagtgttcgt acgcctgtat gaacagggct
     4321 tgatttatcg cggcaaacgc ttggtgaact gggatccggt attgggtacc gcagtgtctg
     4381 atttggaagt ggaaagcgtg gaagaacaag gctctatgtg gcacatccgc tatccgctgg
     4441 cggacaatcc tgccgaagcc gtcatcgtcg ccaccacccg tcccgaaacg ctgttgggcg
     4501 acgttgccgt tgccgtcaat cccgaagacg aacgttatac ccacttaatc ggcaaagaat
     4561 taatcctgcc gctgaccggc cgcaccattc ccgtgattgc cgacgaatac gttgaaaaag
     4621 acttcggcac cggctgcgtg aaaatcacgc ctgcgcacga cttcaacgac tacgaagtcg
     4681 gcaaacgcca cgatacgcgc ttggttaatg tgttcgactt ggaagccaaa gtattggcaa
     4741 acgccgaagt gttcaacttc aaaggcgaag cgcaaccaag ctttgccatg cctgaaaaat
     4801 acgcaggctt ggaccgcttt gccgcgcgca aacaaatggt tgccgatttg caggaacaag
     4861 gtttcttggt cgaaatcaaa gcgcacacgc tgatgacgcc gaaaggcgac cgaacaggct
     4921 cagtgattga gccgatgctg accagccaat ggtttgtcgc catgtccgct acgccaaacg
     4981 gcggcgagcc tgacagcgaa ttcaaaggct tgagcctcgc cgacaaagcc aaaaaagccg
     5041 tcgacagcgg cgcggtacgc tttatccccg aaaactgggt caacacctac aaccaatgga
     5101 tgaacaacat ccaagactgg tgcatctcgc gccaactgtg gtgggggcat caaatccccg
     5161 cgtggtacga cgaagcaggc aatgtttacg tcgcccgcaa tcaggtggaa gccgaaaaac
     5221 aagccggcaa aacaggcttg acccgcgaag aagacgtatt ggacacttgg ttctcctccg
     5281 cgctcgtgcc gttctccacg ctcggctggc cgtctgaaac cgacgaactc aaagccttcc
     5341 tgccgtccaa cgtcttggtt accggctacg aaatcatctt cttctgggtg gcgcgtatga
     5401 ttatgatgac cacccacttc accggcaaag taccgtttaa agacgtgtat atccacggca
     5461 tcgtgcgcga ccacgaaggc aaaaaaatgt ccaaatccga aggcaacgtc attgaccctg
     5521 tggatttgat cgacggcatc ggcttggaaa aactgctggt aaaacgcacc accggcctgc
     5581 gcaaacccga aaccgcgccg aaagtggaag aagccacgaa aaaactcttc cccgaaggca
     5641 ttccgagtat gggcgcggac gctttgcgct tcactatggc gagctacgcc agcttggggc
     5701 gttcggtcaa cttcgacttc aaacgcgccg aaggctaccg caacttctgc aacaaaatct
     5761 ggaacgccac caacttcgtc ttgatgaaca ccgaaaacca agactgcggt tacggcgcaa
     5821 ccgctgccga accgcgcggc tactccttcc ccgatatgtg gattgtaggc cgtctgaatc
     5881 agaccatcga gcaagtaacg caagcctacg aaacctaccg ctttgatttg gcggcggaaa
     5941 ccctgtacag cttcgtgtgg aacgactatt gcgactggta tctggaactt gccaaagtgc
     6001 agctccaaac cggctgcgcc agccgccaac gcgccacacg ccatacctta ttgcgcgtac
     6061 tcgaagccgc cctgcgcctg ctgcacccga ttatcccgtt catcaccgaa gaactgtggc
     6121 aaaccgtcgc ccctatgtgc gacgcgaaaa ccgccgacag catcatgctc gcccgcttcc
     6181 ccgaagccga cggcggcgat attgttcaga cggcattcgg gcaaatgacc gtgttacagg
     6241 atttgattgg cgcagtccgc aacctgcgcg gcgaaatggg catccagccc aacgtgaaag
     6301 ccccgctgtt tgtcgaaagc gcagacgact tggcggacta cctcaaatac ctgccgatga
     6361 tgacccgact gaccgaagca cagcaagtcg ccaccctgcc cgaaagcgaa gacgcgcccg
     6421 tcgccgtctg caacggcgcg cgcctgatgc tgaaagtcga aatcgacaaa gccaccgaaa
     6481 ccgcccgttt gagcaaagaa gccgaaaagc tgcaaaaagc cttggacaaa ctcaacgcca
     6541 aactctccaa acccggctac accgaaaaag ccccggcgca tttggtggaa aaagacaaag
     6601 ccgatttggc ggaattggaa gacaaaatgg caaaagtgca aactcagttg tcgaagttga
     6661 aagactgatt tgattgaatc aacaaggccg tctgaaaaat gtttttcaga cggcct
//
LOCUS       DAXHNP010000115         6715 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.115, whole genome shotgun sequence.
ACCESSION   DAXHNP010000115 DAXHNP010000000
VERSION     DAXHNP010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6715
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.115"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            175..1233
                     /gene="alr"
                     /locus_tag="ACFM5C_001597"
     CDS             175..1233
                     /gene="alr"
                     /locus_tag="ACFM5C_001597"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFC6069267.1"
                     /translation="MRPLNVQIRLGNLRHNYRILKEMHGGKLLAVVKADAYGHGAVRC
                     AFALADLADGFAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQ
                     WQLEALLSRHWKKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFS
                     CADEPESGITEIQMEAFDLGTEGLEGEESLANSAAILNVPEARRDWGRAGLALYGISP
                     FGGSDDRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRR
                     APSNSPVAVDGKLTRVIGRVSMDMMTIELDASQEGLGHEVELWGDTVNINTVAEAAGT
                     IPYELMCNIKRAKFTYIE"
     gene            complement(1775..3130)
                     /locus_tag="ACFM5C_001598"
     CDS             complement(1775..3130)
                     /locus_tag="ACFM5C_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HFC6069268.1"
                     /translation="MSIQSGEILETVKMVADQNFDVRTITIGIDLHDCISSDINVLNQ
                     NIYNKITTVGKDLVTTAKYLSAKYGVPIVNQRISVTPIAQIAAATHADSYVSVAQTLD
                     KAAKAIGVSFIGGFSALVQKGMSPSDEVLIRSIPEAMKTTDIVCSSINIGSTRAGINM
                     DAVKLAGETVKRTAEITPEGFGCAKIVVFCNAVEDNPFMAGAFHGSGEADAVINVGVS
                     GPGVVKAALENSDATTLTEVAEVVKKTAFKITRVGELIGREASKMLNIPFGILDLSLA
                     PTPAVGDSVARILEEMGLSVCGTHGTTAALALLNDAVKKGGMMASSAVGGLSGAFIPV
                     SEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDMIAVPGDTPAHTISGIIADEAAIGMI
                     NSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKEGSCEVFVNRGGRIPAPVQSMK
                     N"
     gene            complement(3145..3417)
                     /locus_tag="ACFM5C_001599"
     CDS             complement(3145..3417)
                     /locus_tag="ACFM5C_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HFC6069269.1"
                     /translation="MNNSVITVIGKDRVGIVYDVSKILAENQINILNISQQLMDDFFT
                     MIILVDTSKCSKSRQEVLDLFAEESKKLALDIRMQNEEIFQAMHRI"
     gene            complement(3543..4280)
                     /locus_tag="ACFM5C_001600"
     CDS             complement(3543..4280)
                     /locus_tag="ACFM5C_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HFC6069270.1"
                     /translation="MKKLSRIVFSTVLLGFSAALPAQTYSVYFNQNGKLTATMSSAAY
                     IRQYSVVAGIAHAQDFYYPSMKKYSEPYIVASTQIKSFVPTLQNGMLILWHFNGQKKM
                     AGGFSKGKPDGEWVNWYPNGKKSAVMPYKNGLSEGTGYRYYRNGGKESEIQFKQNKAN
                     GVWKQWYADGSIKTEMVMVNDEPAKILTWDESGRLLSELSIRHHQRNGVVLEWYEDGS
                     KKSEAVYQDDKLVRKTQWDKDGYLIEP"
     gene            complement(4561..5460)
                     /gene="prmB"
                     /locus_tag="ACFM5C_001601"
     CDS             complement(4561..5460)
                     /gene="prmB"
                     /locus_tag="ACFM5C_001601"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6069271.1"
                     /translation="MFNQAAQELTTIRDILRFAVSRFNEAGLFFGHGTDNAHDEAAYL
                     ILHTLNLPLDMLAPYLDAKLLEAEKEEVLAVIERRAVEHIPAAYLTHQAWQGEFDFYV
                     DERVIIPRSFIYELLGDGLRPWIEYDELVHNALDLCTGSGCLAIQMAHHYPDAQIDAV
                     DVSLDALEVAGINVEDYGLEERIRLIHTDLFEGLEGTYDLIVSNPPYVDAESVELLPE
                     EYLHEPELALGSGADGLDATRQILLNAAKFLNPKGVLLVEIGHNRDVLEAAYPELPFT
                     WLETSGGDGFVFLLTREQLLGEE"
     gene            5605..6198
                     /locus_tag="ACFM5C_001602"
     CDS             5605..6198
                     /locus_tag="ACFM5C_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069272.1"
                     /translation="MADGMGNLIGWEKTGLVVGKQWITAKDDKVSDVCNANGEMGVIG
                     LYEPFSHGALTIPGHPNCRCEVVSVSGGELGEFAEKKELRKAAMQYARDNFIGKSYVN
                     KNSGHELKVTWQGVKHAASKANQAELSIMTKLDDLLRYAKYEGSYSDRKGHPNIIAAH
                     KYRAVAKVGNESLNIGVIVREFPDDHKHYDHFILKDE"
     gene            6310..>6715
                     /locus_tag="ACFM5C_001603"
     CDS             6310..>6715
                     /locus_tag="ACFM5C_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6069273.1"
                     /translation="MTKLYAEIAKMETQDDDTVKVWGYASSEEIDSDGEVIAAAAMKA
                     AIPDYMKFGAGREMHGSNAAGTAIEINVEDDGITFFGAHIIDPVVVSKVKTGVYKGFS
                     IGGSVTARDDLNKSQITGLKLTEISLVERPANP"
BASE COUNT         1840 a         1667 c         1531 g         1677 t
ORIGIN      
        1 tttgggaaag cgattatatc aggaaaagca aaccgccttc ctacctgaaa actgctgctt
       61 cggcttgaag acacaagggt ctttaatatt ttaaaagcct tgccgttgga ttataattcc
      121 ctaattgatt tcttaatttt gctaataaac acttgcttgg taaggaatga atttatgcgc
      181 cctttgaacg tgcagatcag gttgggcaac cttaggcaca attatcggat tttaaaggaa
      241 atgcacggag gcaagctgtt ggcggtagtg aaggccgacg catacggaca cggtgcggtc
      301 agatgtgctt tcgcgctggc agacttggca gacggctttg ccgtggcgac aatcgatgaa
      361 ggaatcaggc tgcgggagag cggcattacc catccgattg tccttttgga aggcgtattt
      421 gaagcatcag agtacgaagc ggtcgaacaa tactcgctct ggccggcagt cggaaaccaa
      481 tggcaacttg aggctttgct ttcccgccat tggaaaaaac ctgtcaaggt ctggttgaaa
      541 atggattcgg gaatgcaccg taccggtttt ttccctcatg attacgcttc ggcatatgcg
      601 gcattgaagc agtcggaata tgtggacagt attgtcaaat tctcgcattt ctcctgtgcg
      661 gacgaacccg aaagcggtat aacggaaata cagatggaag cattcgattt gggtactgaa
      721 gggctggaag gcgaagaaag ccttgccaac tccgccgcta ttttgaatgt tcccgaagca
      781 cgcagggact gggggcgcgc gggcttggcg ttgtacggca tttccccgtt cggaggcagc
      841 gatgacaggc tgaaacccgt gatgaggctt tccacccgta ttttcggcga acgcgtttta
      901 cagccgcact cccctatcgg ttatggcgca acattttata ccagcaaatc tacgcgggtc
      961 ggcctgattg cctgcggtta tgcggacggt tatccgcgcc gtgccccaag caattccccc
     1021 gtcgccgtcg acggtaaatt gacccgggtc atcggcaggg tctctatgga tatgatgacc
     1081 atcgagctgg acgcttcaca agaaggtttg ggacacgagg tcgaactgtg gggcgatacg
     1141 gtcaacatca ataccgttgc cgaagcggcc ggaaccatcc cttacgaatt gatgtgcaat
     1201 atcaaacgtg caaaattcac ttatatcgag taaccgggtt caaacgaaaa tgccgtctga
     1261 agcctttcag acggcataaa tgcgttttga caaaatcagt aaaagacatt gccaaataga
     1321 aaatactgat aatgcccaca atctgaaacc ccatccttcc cgcaaaaacg gaaaatcaaa
     1381 atcagaaacc taaaatttcg tcattcccgc gcaggcggga atccggtttt ttgagtttcc
     1441 gtcatttctg ataaattctc gtcgtttttc atttctagat tcccgcctgc gcgggaatga
     1501 caaaattaaa gtttcagaat ttatttgaac aacaaactag attcccactt tcgcggggat
     1561 gacggcggat aggttttgtt gtttcggata aattcctgtt gttttttggt ttccagattc
     1621 ccacctttaa aagaatgacg taagaaagca gaaataagga cacagggatt ttttaaattt
     1681 gcaatattct tttctaaaga cattttaccc gatgcctata aacaaaaatg ccgtctgaag
     1741 cctttcagac ggcatttccc catcaaaacc gcaatcagtt tttcatcgat tgaaccggtg
     1801 cgggaatcct gccgccccgg ttgacgaaca cttcgcatga gccttctttt accggcatta
     1861 caggcgcgta gcccaacagg ccgccgaact cgacgctgtc gccgacggtt ttaccggtta
     1921 ccggaataat gcgcacggca gtggttttgc tgttgatcat gccgatggcg gcttcgtcgg
     1981 caatgatgcc ggaaatggtg tgcgcgggtg tgtcgccggg aacggcaatc atatccaagc
     2041 cgaccgaaca aacggcggtc atggcttcga gtttgtccag cgtcagcacg cctgcttcgg
     2101 cggcggcaat cataccttcg tcttcggaaa cggggataaa cgcgccactc aaacccccga
     2161 ccgcgctgga agccatcatg ccgccttttt tcacggcatc gttcagcaat gccaaagctg
     2221 ctgttgtgcc gtgcgtaccg cagacgctca agcccatttc ttcaagaatg cgtgccactg
     2281 agtcgccgac ggcgggggtc ggcgccagcg acaagtcgag aataccaaac gggatattca
     2341 gcatttttga ggcttcgcgg ccgatgagtt cgcccacgcg ggtaattttg aaagcagttt
     2401 tcttcactac ttccgcaact tcggtcaatg tcgttgcatc tgaattttcc aacgcggctt
     2461 ttacgacacc tgggccggat acgccgacat taatcacagc atccgcttcg cccgaaccat
     2521 gaaacgcgcc cgccataaac gggttgtctt ccaccgcgtt gcagaacacg acaattttag
     2581 cgcagccgaa accttcgggc gtgatttccg ccgtgcgttt gacggtttcg cccgccagct
     2641 tgaccgcatc catattgata ccggcacgcg tactgccgat attgatggag ctgcacacaa
     2701 tatcggtagt cttcatcgct tcgggaatgg agcggattaa cacctcatcc gaaggcgaca
     2761 tccctttttg caccaacgcg gaaaaaccgc cgataaaaga cacaccgatg gctttggcag
     2821 ctttatccaa agtttgcgcc acgctgacgt aagaatcagc atgggtggcc gccgcgattt
     2881 gggcaatcgg cgtaacggaa atgcgctgat tcacaatcgg tacgccgtat ttggcagaca
     2941 gatattttgc cgtagtgacc aagtctttgc cgactgtggt aattttattg taaatatttt
     3001 ggttcaacac attgatatcg ctgctgatgc agtcgtgcaa atcaatgccg atggtaatgg
     3061 tgcggacatc aaaattctgg tcggcaacca ttttgacggt ttctaaaatt tcgccggatt
     3121 ggatactcat cacattcctc caactcaaat gcggtgcatc gcttggaaga tttcttcgtt
     3181 ttgcatacgg atatcaagcg cgagtttttt gctctcttcc gcaaacaaat ccaaaacctc
     3241 ttgacgcgat ttgctgcatt ttgaagtgtc caccaagata atcatagtaa aaaaatcgtc
     3301 catcagctgt tggctgatgt tgagaatatt gatttggttt tccgccaaaa ttttggaaac
     3361 atcgtacacg atgccgacgc ggtctttacc gatgacggtg atgactgaat tgttcacagg
     3421 cttactcctt gcagatatcc gttaaagtcc gaaattatac caccgttgga ttttgaagaa
     3481 atattgtcaa caatatatac atacaaaatg ccgtctgaaa ctatttcaga cagcatcaag
     3541 attcagggtt cgattaaata accatcctta tcccactggg ttttcctgac caacttgtca
     3601 tcctgataaa cagcttcgct ctttttagaa ccatcttcat accactccaa aaccaccccg
     3661 ttgcgttgat ggtggcggat agacagttcc gagagtaatc ggccgctttc atcccaagtc
     3721 agaattttgg caggctcatc gttgaccata accatttccg tcttgatact gccgtcggca
     3781 taccattgct tccatacgcc gtttgcctta ttttgcttaa actggatttc gctttccttg
     3841 ccgccgttac ggtaatagcg gtatcccgta ccctcactca agccattttt ataaggcata
     3901 acggcagatt ttttaccgtt cggataccag ttgacccact ccccgtccgg cttacccttg
     3961 ctgaagcccc ccgccatttt tttctgacca ttaaaatgcc acaaaatcaa cataccgttt
     4021 tgcagggtag gcacaaaaga tttgatttgc gttgaagcaa cgatataagg ttcagaatat
     4081 ttcttcatcg acggataata aaaatcctgc gcgtgcgcaa tacccgccac cacactatat
     4141 tgcctgatat aagcggcaga agacatcgtc gccgtcagct ttccgttctg attaaaataa
     4201 acagaatagg tctgcgccgg caaagcggcc gaaaaaccca acaggacagt tgaaaataca
     4261 atccgagata attttttcat tgcaatagcg atataaaaac aaggctgtgt tttagtaatc
     4321 tgttgatttc aattatttgc aagggaaaag acaattattt tccggttagg aataaaccta
     4381 ttctattgaa tatattgaag ccaagtacgc ctatcaacac tatattaaaa cactgccaaa
     4441 aacaattaac ttataaacaa tatggtaagg atttctctgc caagcatcaa acccgagaca
     4501 acgtatcgta aaaatgccgt ctgaaaacaa atcgtcttca gacggcattt ccccttcaac
     4561 tcactcttca cccaataact gctcgcgcgt caagaggaaa acaaaaccgt cgcccccgct
     4621 ggtttccaac caagtaaaag gcaactccgg atacgctgct tccaatacat ccctgttatg
     4681 cccgatttcc accagcaata cacctttggg attcagaaac tttgccgcat tcagaagaat
     4741 ctgcctggtg gcatccaacc cgtccgcccc gctgcccaat gccaattccg gttcgtgcaa
     4801 atactcttca ggcaataact caaccgattc cgcatccaca taaggaggat tggaaacaat
     4861 caaatcataa gtgccttcca atccttcaaa caaatccgta tgaataagcc ggatgcgttc
     4921 ttccaaacca taatcttcga cattaatccc tgccacttcc aaagcatcca agctcacatc
     4981 aaccgcatca atttgggcat caggataatg atgcgccatc tgaatggcaa ggcaaccgct
     5041 tccggtgcaa agatccaaag cattatgcac caactcatcg tattctatcc aaggacgaag
     5101 tccgtcaccc aacaattcat aaataaaaga acgaggtatg attacgcgct catccacata
     5161 gaaatcaaac tctccctgcc atgcctggtg tgtcaaataa gcggctggaa tgtgttcgac
     5221 agcacgacgc tcaataaccg ccagcacttc ctctttttca gcttccaaga gttttgcatc
     5281 aagatatggg gcaagcatat ccaaaggcaa attcaaagta tgcagaatca aataagctgc
     5341 ttcatcatgc gcattatctg ttccatgacc aaaaaagagc cctgcctcat taaaacggct
     5401 gactgcaaaa cgtaaaatat cgcggatagt cgtcaattct tgtgctgcct gattaaacat
     5461 aatatgaacc attctgcgta tagatacttt taattataac agaaacaaca agcaaacctt
     5521 ttcatatcgc caaataacca cccaatctac ccatacaact acataaatgc ccgcgcgaaa
     5581 accatcgccc gaacggaaac gacaatggcc gacggtatgg gcaatctgat tggctgggaa
     5641 aaaacggggc ttgttgtcgg taagcagtgg ataaccgcaa aagacgacaa ggtgtccgat
     5701 gtctgcaatg ccaacggcga gatgggcgta atcgggcttt acgagccttt ctcacacggc
     5761 gcattgacga tacccggtca tccgaactgc cgatgcgagg ttgtttccgt atcgggtggc
     5821 gaattggggg aatttgccga aaaaaaggag cttcgtaaag cggctatgca gtatgcgcgg
     5881 gataacttta tcggcaaaag ctatgtcaat aaaaacagcg ggcatgaact gaaggtaact
     5941 tggcaaggtg tgaaacacgc tgcgtcaaag gcaaatcagg cggaattatc catcatgaca
     6001 aaacttgatg acttattgcg ctacgcaaaa tatgagggtt cttattcgga taggaaaggt
     6061 catcctaata ttattgcagc acataagtat cgtgccgttg ccaaggttgg gaatgagtct
     6121 ttaaatatcg gtgtgattgt aagggaattt ccagacgacc ataaacatta cgaccatttc
     6181 atcttgaagg atgaataaag cccttttgca gtgtcgttct ggagcggata gcgttaaggc
     6241 aagtacactt ccagccttga aaaagggctt taaattcagc atgccattta tacaggcagg
     6301 agtaaaccca tgacaaagtt atacgcagaa atcgccaaga tggagacgca ggacgacgac
     6361 acggtcaagg tttggggtta cgcttcaagc gaggaaatcg attcggacgg cgaagtcatc
     6421 gcggcggcag ctatgaaggc ggcgattccc gattatatga agtttggcgc ggggcgcgag
     6481 atgcacggct caaacgctgc gggaacggca attgaaatca acgttgaaga cgacggcata
     6541 acctttttcg gtgctcatat catcgacccc gttgtcgtgt cgaaagtcaa aacaggcgtt
     6601 tacaaaggct tttccatcgg cggcagcgtt accgcccgcg atgatttgaa caagtcgcaa
     6661 atcacgggct tgaagctgac ggaaatcagc cttgtcgagc gccctgccaa tcccg
//
LOCUS       DAXHNP010000116         6709 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.116, whole genome shotgun sequence.
ACCESSION   DAXHNP010000116 DAXHNP010000000
VERSION     DAXHNP010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6709
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.116"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(133..1266)
                     /gene="nrdB"
                     /locus_tag="ACFM5C_001604"
     CDS             complement(133..1266)
                     /gene="nrdB"
                     /locus_tag="ACFM5C_001604"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class Ia ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HFC6069274.1"
                     /translation="MSYSTFPKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQ
                     LSFFWRPEEIDVSRDRIDYANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDD
                     LIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFA
                     FAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQL
                     FKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPI
                     PWINAWLSSDNVQVAPQEVEISSYLIGQIDSEVNTDDLGDFEL"
     gene            complement(1327..2514)
                     /locus_tag="ACFM5C_001605"
     CDS             complement(1327..2514)
                     /locus_tag="ACFM5C_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="HFC6069275.1"
                     /translation="MNDLAAQTIQVVNKSDDLVASAIQTANKSIAVYCRYIRPNDVGT
                     TGSHQSGFYIQKHFSDDLFDVVCQKGTNKTISIKINWQDGSVTNSNFKYYGQGTRNEA
                     RITGFGKNFEFLSDKYSGSLLVLCRACYKDLLFHAFVLSSDEDIEIFIAETNILPGSL
                     YLPKKQEVEDNLTKLFSLFPNFPKTEEMAVLARENIALNKTNVSNVLKQWVSKEYELF
                     SIFEKREFEIIKSKITDLDSFINFAHSFTNRRKARAGKSLELHLSRIFDEFSLKFETQ
                     AKTEGKKKPDFLFPGSEEYHAMDESGNFIFQTEKLTMLGSKTTCKDRWRQVLNEADRI
                     PHKHLFTLQEGISDTQIQEMSDENLTLVVPKESVKTFGTFGKTHVLTLENFIKYIKSQ
                     QVS"
     gene            complement(2507..3520)
                     /gene="dcm"
                     /locus_tag="ACFM5C_001606"
     CDS             complement(2507..3520)
                     /gene="dcm"
                     /locus_tag="ACFM5C_001606"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HFC6069276.1"
                     /translation="MKNKIQNQLDNIVTLNNEKFTFIDLFAGIGGFRIAMENVGGRCV
                     FSSEWDDKARQTYQVNFNDIPYGDITLKETKAAIPSKFDVLTAGFPCQPFSIAGVSKK
                     KSLGRETGFLDKAQGTLFFDVAEIIGKHRPKIFLLENVKNLVSHDKGNTFKVIKGTLE
                     ELDYQIFYQVMNAKYYVPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILED
                     DVDNSFTLSDNLWLYLQNYAKKHKAKGNGFGFGLVDLDGISRTLSARYYKDGSEILIP
                     QKGKNPRKLTPRECSRLMGFPKDFVIDAVSKTAAYKQFGNSIAVPLVQAIAKQIINEL
                     KNE"
     gene            complement(3578..5857)
                     /gene="nrdA"
                     /locus_tag="ACFM5C_001607"
     CDS             complement(3578..5857)
                     /gene="nrdA"
                     /locus_tag="ACFM5C_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1a ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HFC6069277.1"
                     /translation="MNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVE
                     LKSHIQFYNGIRTDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPP
                     HLYDHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQ
                     NRVTSQIYETPQFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVR
                     TPTRQFSSCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEAR
                     HTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQ
                     LDYGVQINRLLYTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK
                     RIIPAADLFSTLMQERAGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKP
                     LDNINDPNGEIALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTS
                     TMGRRSLGIGVINYAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGA
                     CTLFNQTVYSQGKLPIDTYKKDLDAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPS
                     ETSSQIANATNGIEPPRGLVTVKASKDGILKQVVPEFETLKNAYETLWQLPGNEGYLK
                     LVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHNTRDGA
                     DDTQTDIQDDGCAGGACKI"
     gene            6386..6697
                     /locus_tag="ACFM5C_001608"
     CDS             6386..6697
                     /locus_tag="ACFM5C_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein"
                     /protein_id="HFC6069278.1"
                     /translation="MLAILLSAILGLVSTTAAAGTSEPAHRHTKHIRKANKQMLHPEC
                     RKYLERRAAWYRSQGNVQELRENKKARKAFRSLPYAEQKIQCRAAYEAFDDFDGGSFR
                     R"
BASE COUNT         1795 a         1497 c         1419 g         1998 t
ORIGIN      
        1 gatttttgtt aatccactat aatccactat aaaaggaaca ataaccgatc ctacccgctg
       61 tttttcccat catacaacat acaaatgccg tctgaaacat ccggcttcag acggcatttt
      121 ttcaaaaaac atttacaact caaaatcgcc caaatcatcc gtattcactt cagaatcgat
      181 ctgaccgatc aaataagagg atatttccac ttcctgcggc gcgacctgta cgttgtcgga
      241 cgacagccac gcattaatcc acggaatcgg gttttgattt gcgccttcaa atccggccgg
      301 caaccccacc gcctgcatac gcagattggt aatatattcg acgtattggg ataagatttc
      361 tttgttcaaa ccaatcatcg aaccgtcttt aaacaaatat gccgcccatt ctttttcctg
      421 ttccgccgct tttttgaaga gttggaaaca ttcgtcctgc aactcggcag caatttctgc
      481 catttcagaa tcatcaacac ccgaacgcat cagattaagc atatgctgcg tgccggtcag
      541 gtgcagggct tcgtcgcggg caatcagttt gatgattttg gcgttgcctt ccatcaactc
      601 gcgctcggca aaagcaaacg agcaggcgaa tgaaacgtag aaacggatgg cttccaacac
      661 gttgacgcac atcaggcaga gatagagttt tttcttcaac ccgcgcaaag acacagtaat
      721 gggttttccg ccgacattat gcatcccttc gcccaacagg ttgtaatact gggtgtattc
      781 gattaagtca tcgtaatagc aggcaatgtc ttcggcgcgg gcggtaatgt attcgttttc
      841 gacaatatca tcaaacacga ccgacggatc attcacaata ttgcggatga tgtgggtata
      901 gctgcgcgag tgtatggttt cgctgaagct ccacgtttca atccacgttt ccaactcggg
      961 aatcgaaacc aaaggcagca aggcaacatt cggactgcgc ccttggatgg aatcgagcag
     1021 tgtttgatat ttcagattgc tgatgaaaat atgtttttcg tgttcaggca ggttggcgta
     1081 gtcgatacgg tcgcgcgaca cgtcgatttc ttccggccgc caaaaaaacg acaattgttt
     1141 ttcaatcagt ttttcaaata cctcgtattt ctgctggtca taacgggcga cattaaccgg
     1201 ctgaccgaaa aacatcggct cattcagcgc gtcgtttttg gttttgggaa aggtgctgta
     1261 tgacatagtt aagtgttcgc aggacataat ctattctcta tattaattaa aaatgatctg
     1321 taagttttaa ctaacctgct gagactttat atatttaata aaattttcta aagttaaaac
     1381 atgggttttc ccaaaagttc caaatgtttt tacggattct ttagggacaa ctaaggttaa
     1441 attctcatca ctcatttcct gaatttgagt atcagatata ccttcttgta gagtaaataa
     1501 atgcttatga ggaattcgat ctgcttcatt taaaacttgg cgccagcgat ccttacaagt
     1561 agtctttgaa cctagcattg tcagcttttc agtttgaaat atgaaattcc ctgattcatc
     1621 catcgcatgg tactcttcac ttccaggaaa taaaaaatct ggtttctttt tcccttctgt
     1681 cttcgcttgc gtctcaaatt ttaaggaaaa ttcgtcaaat attcttgata aatgtaactc
     1741 taaagatttt cctgctcttg cttttctgcg atttgtaaaa gaatgtgcaa aattaatgaa
     1801 gctatccaaa tcagtaattt ttgatttaat aatttcaaat tcacgttttt caaaaatgga
     1861 aaataattca tattcctttg aaacccattg ttttaacaca ttactaacgt tagttttatt
     1921 taatgcaata ttttcccttg ccaaaactgc catttcttca gttttgggga agttaggaaa
     1981 tagtgaaaat aattttgtta ggttatcctc tacttcttgt tttttaggta aatataaact
     2041 tcctggtaaa atgttagttt ctgcgataaa tatttcaata tcttcatctg aagataaaac
     2101 aaaagcatgg aataataaat ctttataaca agctctgcac aataccaata aggaaccact
     2161 atatttatca cttaaaaatt caaaattctt gccaaaaccc gtaattctcg cctcatttct
     2221 cgtgccttgg ccgtaatatt taaaattgct attagtgacg cttccatctt gccaattaat
     2281 tttgattgaa atagttttat ttgttccctt ttggcaaact acatcaaaga ggtcgtctga
     2341 aaaatgtttt tgaatataaa atcctgattg gtgactacca gtagtaccaa catcattggg
     2401 acgaatataa cgacagtata ctgcaattga tttatttgct gtctgtattg ctgaagctac
     2461 taagtcatcg gatttattta ctacttgtat tgtctgagct gccaagtcat tcatttttta
     2521 actcatttat aatttgttta gcaatagctt gaaccaacgg tacagcaatt gaattgccaa
     2581 actgcttgta tgcagctgtc ttggatactg catcaataac aaaatcttta ggaaatccca
     2641 ttaaacgcga gcactcccta ggtgtcagct tcctaggatt ttttcctttc tgagggatga
     2701 gtatttcgga accatctttg taatatcgtg cagatagagt tcgtgatatt ccatctaaat
     2761 caactaatcc aaaaccaaat ccattaccct ttgccttatg ttttttagcg taattttgaa
     2821 ggtaaagcca taagttatca gaaagagtaa aagaattatc tacatcatct tccaaaattt
     2881 gctttaattt tggttgtgat tctggtgggg aaggaaaatt gaaatttatt tccttattaa
     2941 aatattgtct atcaaaacct acaataaaaa tacgctccct attttgagga acataatatt
     3001 ttgcattcat aacttgataa aatatctgat agtcaagctc ttctaaagtc cctttaatta
     3061 ctttaaatgt atttcctttg tcatgcgaaa caaggttttt cacattctct aaaagaaaaa
     3121 ttttaggtcg atgttttcca ataatttcag caacatcaaa aaatagagtt ccctgcgcct
     3181 tatctaagaa gcctgtttct cgtcctaggc tttttttctt tgaaacacca gctatagaga
     3241 atggctgaca cgggaatcct gctgttaata catcaaactt acttggaata gctgctttgg
     3301 tttcctttaa tgtaatatct ccataaggaa tatcattaaa atttacttgg taggtttgac
     3361 gggctttatc atcccattca ctagaaaata cacatcgccc accaacattc tccattgcaa
     3421 tgcgaaaacc acctattccc gcaaataaat caataaaagt aaatttctca ttatttaagg
     3481 taactatatt atctaattga ttttgtattt tatttttcat attttatatt tcagatgatt
     3541 tattaatcta aaggccatct gaaaactccc cctttcatca aatcttacaa gccccgcccg
     3601 cgcagccgtc atcctgaata tcggtctgcg tatcgtccgc gccgtcgcgg gtgttatggt
     3661 agtacagggt tttgacgccg tatttgtagg cggtcagcag gtctttgagc atttgtttca
     3721 tagaaacttt gccgccttcg aatttgcccg ggtcgtaggc ggtattggcg gaaatcgatt
     3781 gatcgacgaa tttttgcatc acgccgacaa gtttcaggta gccttcgttg ccgggaagct
     3841 gccacagggt ttcataggca tttttcaggg tttcaaactc cggcacgact tgtttcaaaa
     3901 tgccgtcttt cgatgctttg accgttacca atccgcgcgg cggctcgatg ccgttggtgg
     3961 cgttggcgat ttgcgaactg gtttcagacg gcatgagcgc ggtcagggtg gagttacgca
     4021 ggccgtattt gacgatgtcg gcacgcaggc tttcccagtc gtaatgcaaa ggctcgccgc
     4081 agacggcatc caaatctttt ttgtaagtgt cgatgggcag tttgccttgc gaataaacgg
     4141 tttggttaaa gagcgtgcac gcaccgtatt ctttggcaag gtttgccgat gctttgagca
     4201 ggtaatactg tatggcttca aaggtacggt gggtcagacc gagcgcggag ccgtcgctgt
     4261 agcggacacc gtttttcgcc agataataag catagttaat cacgccgatg ccgagcgaac
     4321 ggcgacccat agtagaggta cgcgcggctt ctaccggata tccctgataa tctaaaagtg
     4381 catcgagcgc acgcacggtc aagtcggcaa gcccttccaa ttcgtccaag ctgtttaatg
     4441 cgcccaagtt aaaggcagac agtgtacaca gggcgatttc gccgttcgga tcgttgatat
     4501 tgtccagcgg tttggtcggc agggcgattt ccatacacaa gttggactga tgaacaggcg
     4561 cgacgcacgg atcgaacggg ctgtgcgtat tgcagtgatc gacgttttga atgtagatgc
     4621 gcccggtccc ggcacgctcc tgcatcagcg tggaaaacag gtcggcagcc ggaatgatac
     4681 gcttgcgtat gttcgggtct tgctcgtatt tcgtatagag ccgctcaaat tcgtcttggt
     4741 cggcaaaaaa cgcttcgtac aaccccggaa cctcgttggg cgaaaacagc gtaatgttgc
     4801 cgcccttaat caggcgggtg tacagcaggc ggttgatttg cacgccgtaa tcaagctgac
     4861 ggatacggtt gtcttccaca ccgcggttgt ttttcaacac cagcaggctt tcggcttcga
     4921 tatgccacaa ggggtagaac aaagttgccg ctccgccgcg cacgccgcct tgcgaacagg
     4981 atttgaccgc cgcctgaaac attttgaaaa acggaatgca gccggtatgc cgcgcttcgc
     5041 cgccccggat ttcgctgtcc aaaccgcgga tacgtccggc attgatgccg atgcccgcac
     5101 gctgggaaac gtatttcaca atcgcgctgg tggtggcgtt gatggaatcc aggctgtcgt
     5161 cgcattcgat cagtacgcag cttgagaact ggcgcgtagg cgtacgcacg ccgctcataa
     5221 tcggggtcgg cagcgatact ttaaatgtgg aaacggcatc gtaaaaccgt ttgacgtaat
     5281 cgaggcgtgt ttctttggga tatttgctga aaagacacat cgccaccaga acatataaga
     5341 actgcggtgt ttcataaatc tggctggtaa cgcggttctg taccagatat ttgccttcga
     5401 gctgtttgac agcggcatag gaaaaggaca tatcgcgttc gtggtcgata taggcgttca
     5461 gttcatcaaa ttcttcgcgg ctgtaatcct caaggatatg cctgtcgtat tttccggcat
     5521 cggtgagctt tttaacgtgg tcgtaaaggt gcggcggctc gtattcgccg taggctattt
     5581 tacgcagatg gaaaatcgcc aaacgcgcgg caaggtattg gtagtccgga gtatcttccg
     5641 aaattaaatc ggcagcggcc ttgatgatgg tttcgtggat gtcgtcggtg cggatgccgt
     5701 tgtagaactg gatgtgcgat ttcaactcga cctgcgacac ggaaacattt tccaatcctt
     5761 ccgccgccca agtaacgaca cggtgaatct tatccaaatc aatggcttct aatcttccgt
     5821 ctcgtttggt tactttcaaa tcagtcggtg tattcatcgc ttcctcttcc actcttgata
     5881 ttcaagacac ggtcttttca aacaaattaa gacagacaat atagtggatt tttggcattt
     5941 tctccagtct tgacaacggt tgcatttttc agtttcaggc aatgcgcgat aaaacccgcc
     6001 tgtcgtattt ttcctataat atttgtttta tctgataatt ctttaccgat aaaaaacggg
     6061 taaatttttt gccttttgac cggctccggc tacaaggcgg tgaaataagg attttccgac
     6121 gaaaaaggaa agcttccggt tttctgcccc tgcgaattgt taaattttgc aaagtatgat
     6181 tttgccgcgc cgccgccgac aaattccatt ttcttaccga ttgaaattta ttattgagat
     6241 taatgtgtta tttgaatccg catatcaaac ggcaagtttt gtcggctgaa tgagtctgaa
     6301 actgccgaca atttgcccgt tccatccttc catcctatac tggaaggaat gacaaactga
     6361 aaggatcgtc atatctgtca aaaagatgct tgccatactg ttgtctgcaa tattgggact
     6421 ggtatcgaca actgccgctg ccggtacgtc agaacccgcc caccgccata ccaaacatat
     6481 ccgcaaggca aacaagcaga tgctgcaccc cgaatgcagg aaatatttgg aacgccgtgc
     6541 cgcgtggtac cgatcgcaag gcaacgtgca ggaattgcgc gaaaacaaaa aggcgcgcaa
     6601 agcattccgc tccctgcctt atgcggaaca gaaaatccaa tgccgggcgg cttatgaggc
     6661 tttcgatgat ttcgacggcg gcagtttccg ccgttaatcc catataaaa
//
LOCUS       DAXHNP010000117         6478 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.117, whole genome shotgun sequence.
ACCESSION   DAXHNP010000117 DAXHNP010000000
VERSION     DAXHNP010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6478
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.117"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..334
                     /locus_tag="ACFM5C_001609"
     CDS             <1..334
                     /locus_tag="ACFM5C_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFC6069279.1"
                     /translation="DASGLGEKIKDGKKTVLSCEEEQKICNTFTNKQAVEDFSVVIGY
                     DEIKAKNHSLSAGQYFEVKIDYVDISADEFAQKMAGFSADLDKLFAESAELEKEIKDR
                     LAMLKFNS"
     gene            366..482
                     /locus_tag="ACFM5C_001610"
     CDS             366..482
                     /locus_tag="ACFM5C_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6069280.1"
                     /translation="MPSESLSDGILFGLENTYAVLSLKERIQKTKATGIYRK"
     gene            complement(642..1979)
                     /gene="ribBA"
                     /locus_tag="ACFM5C_001611"
     CDS             complement(642..1979)
                     /gene="ribBA"
                     /locus_tag="ACFM5C_001611"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HFC6069281.1"
                     /translation="MTDTAGLRRRNLRQWIAEHYGGLQTRFAEAVALNTGELSALLKN
                     KSFGEKKARKIEQAAKMPAFWLDTEHTARPPEHTGKHTMSHISPIPEILADIKAGKMV
                     IITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKN
                     GAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKG
                     GVLVRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPELMKFAEEHKLKIGTIA
                     DLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGTPSADTETLV
                     RVHEPFSVMDFIQANPRHSWSLPKALERIQQAESGVVILLHRTEDGAALLDRTLPKGA
                     NQAYKWDSKSYGIGAQILAGLNVKKLRVLGQPSSFTGLTGFGLEVVGFEEAEK"
     gene            2088..2222
                     /locus_tag="ACFM5C_001612"
     CDS             2088..2222
                     /locus_tag="ACFM5C_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069282.1"
                     /translation="MPSEAGFVASDGIAAILAGRGLFVPTSRALLIWGLPEAYSEKNF
                     "
     gene            complement(2201..2857)
                     /locus_tag="ACFM5C_001613"
     CDS             complement(2201..2857)
                     /locus_tag="ACFM5C_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HFC6069283.1"
                     /translation="MILHPSSLNYHVIPKGADFSDNDFVRHFETLVEGRYYIANAWTK
                     IVRREIIIKNNLFFPKGYIHEDFPYSLKLARFVKTFAFYDNPFYQYRVLGNSISHNVK
                     YKNFSDMLAHLDRGVDFLVENKNSPIYGGLQKFVFDNIGYLRSILVRLYFSKNIILIY
                     RKYFSFKEKCRKIFGAKTIRPVFIGKTAFIIGLPILRLLVPPMLYPAIKAVYQKFFSE
                     "
     gene            complement(2889..3215)
                     /locus_tag="ACFM5C_001614"
     CDS             complement(2889..3215)
                     /locus_tag="ACFM5C_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6069284.1"
                     /translation="MIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGC
                     GKICDEYAGKYPHIKVIHQENGGLSDARNAGIRAAKGDYLIFLDSDDYWADTNRSKNA
                     GGGNSL"
     gene            complement(3371..3964)
                     /gene="ribA"
                     /locus_tag="ACFM5C_001615"
     CDS             complement(3371..3964)
                     /gene="ribA"
                     /locus_tag="ACFM5C_001615"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFC6069285.1"
                     /translation="MSELLNYVASCRLPTEWGVFTMHGFEEANGQEHVALTVGDFSDG
                     NPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLRQEGRGIGLINK
                     IRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLK
                     DAGINVVERIPLHVGENLENKRYLQTKADKLGHLMSE"
     gene            complement(3957..4631)
                     /locus_tag="ACFM5C_001616"
     CDS             complement(3957..4631)
                     /locus_tag="ACFM5C_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069286.1"
                     /translation="MPAALIKDFLLTQGLKLPLDEVRTAYLTAQTVMDMGTTSIERSV
                     LWLEHEDWRLADYLEQNSGNEEGLKRLFMALDSVFSRCKGVRAAAVYALMPSENAAFR
                     LVCLSRQGEVLENLWDLDEAAGKVSLACRSAQSGWMNVASDVRRWLDLGELSGERNHA
                     SAAQISIPVCTESGGVLGVVHVEFECAECAGTAAQVEWVALALALSEPLKQLLGITAA
                     EGDENV"
     gene            4785..4869
                     /locus_tag="ACFM5C_001617"
     tRNA            4785..4869
                     /locus_tag="ACFM5C_001617"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4819..4821,aa:Leu,seq:tag)
     gene            5389..6423
                     /gene="purM"
                     /locus_tag="ACFM5C_001618"
     CDS             5389..6423
                     /gene="purM"
                     /locus_tag="ACFM5C_001618"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFC6069287.1"
                     /translation="MSTSLSYRDAGVDIDAGDQLVENIKPFAKRTMRPEVLGDLGGFG
                     ALVEIGKKYKNPVLVSGTDGVGTKLKLAFDWDKHDMVGIDLVAMSVNDILVQGAEPLF
                     FLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVG
                     VVEKENVITGRSIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLRE
                     AVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPENTVAQIDAKSWELPK
                     LFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVQGLLGEQGETVYRLGLIRER
                     QGDEHQTQVA"
BASE COUNT         1612 a         1571 c         1687 g         1608 t
ORIGIN      
        1 cgacgcatcg ggcttgggcg aaaaaattaa agacggcaaa aaaaccgtac tttcctgcga
       61 agaagaacaa aaaatctgca atactttcac gaacaaacag gcagtggaag atttcagtgt
      121 ggtaatcggc tacgatgaaa tcaaagcgaa gaatcacagc ttgtcggcgg ggcagtattt
      181 cgaggtaaag attgattatg tggatatttc cgccgacgaa tttgcgcaaa aaatggcggg
      241 attttcagcg gatttggata aacttttcgc cgaatctgcc gaattggaaa aagagattaa
      301 ggatagattg gcgatgttga aattcaattc ataaataccg atgaatgaaa ccggtcaaac
      361 ttaaaatgcc gtctgaaagc ctttcagacg gcattttgtt tggtttggaa aatacttatg
      421 ccgttctttc cctgaaagag agaatccaaa aaaccaaagc cacaggaatt tatcggaaat
      481 gacaaaaacc cgacgaaccg gattcccgcc tgcgcgggaa tgacgaatta gaagttaccc
      541 gaaatttgca aaaacaaaat ccaacccaac agaccgggtt ttcgtttgca cggaaataat
      601 gcaataaata aagcaaatat aaagtatttg aatttactat attatttttc cgcttcttca
      661 aagccgacga cttccaaacc gaagccggtc aggccggtga aagatgaggg ctgcccgagg
      721 acgcgcagtt ttttgacgtt gaggccggcg aggatttgcg caccgatgcc gtagcttttg
      781 ctgtcccatt tgtaggcttg gtttgcacct ttgggcaggg tgcggtcgag cagggcggcg
      841 ccgtcttcgg tgcggtgcag aaggatgact acgccgcttt cggcctgttg gatgcgctcg
      901 agtgctttgg gcagcgacca tgaatgacgc gggttagctt ggatgaagtc catgacgctg
      961 aagggttcgt ggacgcggac gagggtttcg gtgtcggcgg agggcgtgcc tttgacgagg
     1021 gcgaggtggg tttcgccgga gagtttgtcg acgtaaacgt gttgttggaa ctcgccccac
     1081 ggggtttgta caggcgcatt gcccatgtct tcaagcaggc tttcggtacg gctgcggtat
     1141 tcgatgaggt cggcaatcgt gccgattttg agcttgtgtt cttcggcgaa tttcatcagt
     1201 tcgggcatac gcgccatcgt gccgtcgtcg ttgatgattt cgcaaataac ggaggcagga
     1261 atcagcccgt tcatttgcgc caggtcgacg ccggcttcgg tgtgtccggc gcggacgagt
     1321 acgccgcctt tttgggcgcg aagcggaaag atatgaccgg gttggacgat gtcttcgggt
     1381 ttagcggtcg gggaaacggc ggtttgaata gtcagggcgc ggtcggcggc ggaaatgccg
     1441 gtggtaatgc cgtgtgcggc ttcgatggag acagtaaagt tggtgccgta ttgcgcgccg
     1501 tttttttggg tcatcatcgg cagcccgagt ttttcgacca tttcgccgtc catcggcagg
     1561 cagaccaagc cgcgcgcgtg tttgatcatg aagttgatgg cttcgggcgt gacgaattgc
     1621 gccgccatca gcaggtcgcc ttcgttttct cggtcttcgg catcggtgat gatgaccatt
     1681 ttgccggctt tgatgtcggc taggatttcg gggatggggg aaatatggga catggtgtgt
     1741 tttcctgtgt gttcgggcgg gcgggcggtg tgttcggtat cgagccagaa ggcgggcatt
     1801 tttgccgcct gttcgatttt acgggctttt ttctcgccga aggatttgtt tttcaaaagg
     1861 gcggagagtt cgcctgtgtt gagggcaacg gcttcggcaa aacgggtttg caaaccgccg
     1921 tagtgttctg ctatccattg ccgcaggttg cggcggcgca gaccggctgt gtcggtcatc
     1981 gtttcatcct ttgtagaaat cggatgtagc ggattgtaat cgcgtattta ccaaaaagca
     2041 aatctgtttt tttcgccaaa ccgaattatt tgctttttgg taaacagatg ccgtctgaag
     2101 ccggattcgt ggcttcagac ggcattgccg caatccttgc cggccggggg ctgtttgtcc
     2161 caacttcccg cgcacttctg atttggggtt tgccggaagc ttattccgaa aaaaatttct
     2221 gataaacggc cttgattgcc gggtacagca taggcggtac gagcaggcgc aatatcggca
     2281 atcctatgat gaatgcggtc ttcccgataa aaaccggacg gattgtcttc gcgccgaata
     2341 tctttctgca tttttcttta aatgaaaaat atttccggta gatgaggata atgtttttgg
     2401 aaaaataaag ccttaccaat atagacctca gatagccgat attgtcgaag acaaattttt
     2461 gcaaaccgcc gtagatgggg gaatttttgt tttcgactaa aaaatccaca ccccggtcga
     2521 gatgcgccag catatcgctg aaatttttgt atttgacgtt gtggctgata gagttgccga
     2581 gaacgcggta ttgataaaaa gggttatcgt aaaaggcaaa agtcttgaca aaacgcgcca
     2641 atttcaaact gtacgggaaa tcctcgtgaa tgtatccttt tgggaaaaac agattgtttt
     2701 tgatgattat ttcccgcctg acgatttttg tccacgcgtt ggcgatatag taccgcccct
     2761 ccaccaacgt ttcaaaatgg cggacaaaat cattatccga aaagtccgcc cctttgggga
     2821 tgacgtggta attgagggac gagggatgca ggatcaaatc aacctttttg tctgcaagtt
     2881 gttgtaaatc aaagagaatt cccccccccc gcgttttttg aacggttggt atcggcccaa
     2941 taatcgtcgc tgtccaaaaa gattaggtaa tcgccttttg ccgcccggat accggcgttg
     3001 cgggcatccg acagcccgcc gttttcttga tgaatcactt ttatatgcgg atatttgcct
     3061 gcatattcgt cgcaaatctt cccgcagccg tccggcgaac cgtcatcgac caaaatcatt
     3121 tcataatcgg caaaattttc ggcaagcacg gaatccacgc agcagcggag gtatttttcc
     3181 acattgtaaa tagggacgat gatggagaaa atcataaata tcaatccatt atattaagat
     3241 gtttgcgcgt atgcctcaaa cccgcgctcg caatgcgttt gcatccacta taaaacttat
     3301 tgctttatca aggtatggaa acctgtttcc cgaaaggcgg cgcaggatgc ccgttccctg
     3361 caactttgcc ttattccgac atcagatgtc ccagcttgtc tgctttggtt tggaggtagc
     3421 gtttgttttc aaggttttcc ccgacgtgca gggggatgcg ttcgaccacg ttaatccccg
     3481 catctttcag ggtttggatt ttttcggggt tgttggtcag cagtttgacc gagcggatgc
     3541 ccagatattc gtagatagat tgcgccaaac ggaaatcgcg ggcatcgacg ggcagcccga
     3601 gtgccaaatt ggcttcaacc gtatccatac cttggtcttg cagatgatag gcgcggattt
     3661 tgttaatcag cccgatgccg cgtccttcct gacgcagata gacgatgatg ccgcgcccct
     3721 ctgtctgtac ggccctcatg gccgcttcaa gttgaggtcc gcagtcgcat tttctcgaga
     3781 acagcgcatc gcccgtcagg cattcggagt ggatgcgcgt cagaaccgga ttgccgtctg
     3841 aaaaatcacc gacggtcagc gcgacgtgtt cctgcccatt tgcctcttca aagccgtgca
     3901 tcgtaaatac gccccattcg gtcggcaggc ggcaggaagc aacatagttt aataattcag
     3961 acattttcat ctccttctgc ggcagtgatg cccaaaagct gcttcaaagg ttcggacaaa
     4021 gccaaggcaa gagccaccca ttccacctgt gctgccgtac ccgcacactc tgcgcattca
     4081 aattccacat gaaccacgcc caacacaccg ccactttccg tgcagaccgg aatggaaatt
     4141 tgcgccgccg aagcatgatt gcgttctccc gaaagctctc ccaaatccaa ccaacggcgt
     4201 acatccgagg caacattcat ccagccgctt tgcgccgaac ggcaagccag cgaaaccttg
     4261 cctgccgctt catccaaatc ccacaggttt tccaaaacct cgccctgccg ggacaggcaa
     4321 accagccgaa aggcggcatt ttcagacggc atcagggcat aaacggctgc ggcgcgcacg
     4381 cctttacagc gtgaaaacac cgaatccaaa gccatgaaaa gccgtttcag accttcctca
     4441 ttcccgctgt tttgctccaa ataatcggca agcctccaat cctcatgctc aagccacaaa
     4501 accgaacgct caatcgaagt cgtccccata tccattaccg tctgcgccgt cagatacgcc
     4561 gtccgaacct cgtcaagcgg cagcttcaaa ccctgagtca gcagaaaatc cttaatcaaa
     4621 gcagcaggca tacccaaatt ccgtcaataa aaacaaaaaa ccgcccgatt ccgatgtcag
     4681 gcggacgaaa aacagatttt accgccccaa accccaagcc atcaacagcc ccgccgaaaa
     4741 ccttgcacaa aaaaacaaaa tctgtataat tgtccaattc ccatgcggac gtggcgaaat
     4801 tggtagacgc accagattta ggttctggcg ccgagaggtg tgagagttcg agtctctccg
     4861 tccgcaccaa taatgataaa taaatcatat agttaatgct tatcgggaca aattagtgcc
     4921 acaaaacata agtcgtctgc ttttcagcgg gcggcttttt tatctgccta tatgtttcaa
     4981 cacgcagaac ggtacataaa gtgccgccat ttgttctacc ccgaatcaga agcgggtgct
     5041 tccgcccgca atcagattca ccgcccctaa tgccggggtt tcaactggaa agaagaaaat
     5101 attgattttg atgatggcat caaaaaaccc cttccgcccg tctgccaaaa ggaatggtta
     5161 agaaaagcaa tgcgtctttt gatggaacgc gatatataag gaattgaggg gaagggcagg
     5221 cgggtttctg cccgttaatc ctgcggacga tcccgccaaa cccgacacgc gcgggcatat
     5281 ggcggattgt ttacaatatt gtctaaaaat ctgaacctgc aaacgtgaaa taaggtagaa
     5341 tacgccccgt tattttaccg tccaatcccc atttaccaag gaaaaacgat gagtacttca
     5401 ttgagttacc gcgatgcagg tgtcgatatc gacgcaggcg accaactggt cgaaaacatc
     5461 aaaccgtttg ccaaacgcac catgcgtcca gaagtattgg gggatttggg cggttttggc
     5521 gcattggtcg aaatcggcaa gaaatataaa aatcccgtat tggtcagcgg tacggacggt
     5581 gtgggtacca agctcaagct tgcctttgat tgggataaac acgatatggt gggcatcgac
     5641 cttgttgcaa tgagtgtcaa cgatattttg gttcaaggag cagaacctct gtttttcttg
     5701 gattatttcg cctgcggcaa attggatgtt ccgcgcgcaa ccgatgtcat caaaggcatt
     5761 gcacaaggtt gcgaagaatc cggctgcgcc ctgattggcg gggaaactgc cgaaatgccg
     5821 ggcatgtatc ccgtcggaga atacgatttg gcgggttttg ccgtcggcgt agtggaaaaa
     5881 gagaatgtca ttaccggccg cagtatcggc gcgggcgatg tggtattggg tttggcttcc
     5941 aacggcgcac attcaaacgg ctattccctt atccgtaaaa tcatcgaacg cgacaatccc
     6001 gatttggatg ccgagtttga taatggcaaa accttgcggg aggctgttat tgcgccgacc
     6061 cgtctgtatg tgaaaccgat tcttgccgct ttggaaaaat ttaccattaa aggtatggca
     6121 cacattaccg gcggcggcat taccgaaaac gtgccgcgcg tgttgcctga aaacacggtt
     6181 gcacaaatcg atgctaaatc gtgggaattg cccaagctct tccaatggct tcaaaaggcg
     6241 ggcaatgtgg aaacccaaga aatgtaccga acctttaact gcggcatcgg catggtcgtt
     6301 attgttgctg ccgaagatgc cgatgcggtt cagggtctct tgggtgaaca aggtgaaaca
     6361 gtttaccgtt taggtttgat ccgtgagcgt cagggagacg agcatcaaac ccaggttgcc
     6421 tgattgcttc tatagcgaaa tgccgtctca aacatgggtt tggacggcat ttttatag
//
LOCUS       DAXHNP010000118         6355 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.118, whole genome shotgun sequence.
ACCESSION   DAXHNP010000118 DAXHNP010000000
VERSION     DAXHNP010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6355
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.118"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            33..335
                     /locus_tag="ACFM5C_001619"
     CDS             33..335
                     /locus_tag="ACFM5C_001619"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069288.1"
                     /translation="MKDFDEVCEKWEKSFKENGKEIEYNQKYSRIYGEVRGAGFNGDI
                     GEKLHRCAVMEWAENETVKLAQKWEQEQKKQQIQQKKETEKSPKHKASRDDWEMER"
     gene            complement(417..2504)
                     /locus_tag="ACFM5C_001620"
     CDS             complement(417..2504)
                     /locus_tag="ACFM5C_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HFC6069289.1"
                     /translation="MDYLSRLSFGFNKKLPVILQTEVAECGLACLTSILSYYGFHTDL
                     RTLRQKYTLSLKGANLADIMRFGNEMNLTPRALRLELDELSNLQLPCILHWNLNHFVV
                     LCSISKDSIVIMDPAVGMRKIKMDEVSQKFTGIALELFPNTHFEEKKETKKIKILSLL
                     RGISGLKRSLIQMLILAISLEVFALVSPFFMQWVIDHVIVTADKNLLLTLTLGFGLLA
                     ILQQLISLLQAWVGMHLSTTLNLQWKANIFKRLLDLPNDYFSKRHLGDVISRFGSIDH
                     IQETLTSTFFVLVLNSLMAVFTFVLMTIYSTQLSLIVLLTLVLYILIRWLAYYPLRNA
                     TEENIVHEAKQNSYFMETIRGIQSVKLFDKHYQRHGTWMSLFVNTVNTKLTTDKLSAL
                     FEFSNKLLFSMENIIIIYLGASAILDGSFTVGVLMAFLAYKGQFESRTASLVDQYIQI
                     KMLGLHAERLADITLNETETEIIKYNHIPKLDNEQLVLKVENVSFRYADNEPYLFENI
                     NLEFKDNEAVVLTGQSGRGKSTLLNILTGSLKPETGTVSINGHDIYQVSPSFIRGLSG
                     IVRQDDVLFAGSIGENISFFDESPNMELIEQCAKMAQIHDDILKMPMGYETLIGDMGN
                     ILSGGQKQRVILARALYKRPKILFLDEASSHLDVENEQKINHNLKSLGIMKIMVAHRQ
                     ETIQSADKILNLG"
     gene            complement(2507..3772)
                     /locus_tag="ACFM5C_001621"
     CDS             complement(2507..3772)
                     /locus_tag="ACFM5C_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HFC6069290.1"
                     /translation="MSHLFRKEVFVAQQNKWTGQVILTRPFSFLFLTFCAFLIALCII
                     IFLIFGSYTNKTTVEGQLLPTMGVVRVYSSDIGTITHKFVEDGNFVKAGEPLFKLSTS
                     RFGEKGNVQAKLAAEANLKKTLALQELERLKRIHQNEQKNVHNNIHRLNNQLENIKQQ
                     ITGQNRQIRLAEKTLNKNKFLASQGAVSQQDKMTAESHLLEQRSRLESLKLEQNNAIR
                     ELDEQKITLSSLPERHKTELSQLNRAITEMNQEILDFDLKSEQTIRASKSGYISTINV
                     DIGQQVEPSKLLLSIVPEQTELVANLYIPSKAVGFIKPKDKVVLRYQAYPYQKFGHAT
                     GEIISVARTALGKQELSGLGIIFTNPTLLNEPAYLVKVKLEKQTIKAYGENKPLQIGM
                     ILEADILHERKKLYEWVLDPLYSISGKIN"
     gene            complement(3816..3953)
                     /locus_tag="ACFM5C_001622"
     CDS             complement(3816..3953)
                     /locus_tag="ACFM5C_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069291.1"
                     /translation="MNTETIYATVFCILAATISGLLVKFNVIKIETSINSKFMLLGIS
                     I"
     gene            complement(4993..5229)
                     /locus_tag="ACFM5C_001623"
     CDS             complement(4993..5229)
                     /locus_tag="ACFM5C_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HFC6069292.1"
                     /translation="MKELHTSELVEVSGGKFHIFAQGGGNLGKKDMVAVGKIGASYSP
                     NNSGVEFSVSKQFGYVQGLGVQFSKPTFGISKKW"
BASE COUNT         2035 a         1113 c         1100 g         2107 t
ORIGIN      
        1 ttatctagga cagcccctta aaaaatatcc ctttgaaaga ttttgatgaa gtttgtgaaa
       61 agtgggagaa atcctttaaa gaaaatggaa aagaaattga atataatcaa aaatattcaa
      121 gaatttatgg tgaagttcgt ggagctggct ttaatggcga tatcggagaa aagctacatc
      181 gttgtgccgt gatggaatgg gctgaaaatg agaccgtgaa attagcccaa aaatgggaac
      241 aagagcagaa aaaacaacaa attcaacaga aaaaggaaac tgaaaaatcg ccaaaacaca
      301 aagccagtcg tgatgattgg gaaatggaac gttaaaccgc tattttcatg tattctatta
      361 aattatttga aaaaagactt cactttttgt taaagaaaaa tgaagtcttg ttctgttcaa
      421 cctaaattca gaattttatc tgccgattga attgtttctt ggcggtgtgc aaccattatt
      481 ttcataatac caagactttt taggttatgg ttaatttttt gttcattttc tacatctaaa
      541 tggctacttg cttcgtctaa aaatagaatt ttgggtcgtt tatacaatgc acgagccaag
      601 ataactctct gcttttgtcc acctgataag atatttccca tatcgccaat caaggtctca
      661 tagcccattg gcattttaag tatatcgtca tgtatttgtg ccatttttgc acattgttca
      721 atgagctcca tatttgggct ttcatcaaaa aatgaaatat tttccccaat agaacctgca
      781 aaaaggacat catcttggcg aacaatcccg ctcaatcccc taataaagga tggagaaact
      841 tgatatatat catgcccatt aatactaact gtaccagttt caggttttag gctacctgtt
      901 aaaatgttta acaaagtgga cttcccccga ccagattgtc ctgttaaaac aactgcttca
      961 ttatctttaa attccaaatt aatgttttca aaaagatatg gctcattatc agcatatctg
     1021 aatgagacgt tttcaacttt aagaaccagt tgttcattat ctaatttagg tatatgatta
     1081 tacttaataa tttcagtttc tgtttcattt aaagtaatgt cagccaaacg ttcagcatga
     1141 agccctaaca ttttgatttg gatgtattgg tcaacgagag aagctgttct gctttcaaat
     1201 tgccctttat aagccaaaaa agccatcaga acaccgactg taaatgaacc atctaaaatt
     1261 gcgcttgcac caagataaat tatgataata ttttccatgc taaacaacag tttatttgaa
     1321 aattcaaata aagcagagag tttatctgtt gtcagcttgg tattgactgt attcacaaat
     1381 aggctcatcc aagtgccatg tctttgataa tgtttatcaa ataatttaac tgattggata
     1441 ccacgaatgg tttccatgaa atatgagttt tgtttggctt catgaacaat attttcttct
     1501 gttgcatttc ttaatgggta atatgcaagc caacgaatta gtatgtacaa aacaagtgtt
     1561 aaaagaacaa tcagcgataa ttgagtgctg taaattgtca ttaacacgaa agtaaaaaca
     1621 gccattaagc tatttaaaac taaaacaaaa aaagtagaag ttagtgtttc ttggatatga
     1681 tctattgaac caaatcttga aatcacatct cctaaatgtc gtttactgaa atagtcatta
     1741 ggtaagtcaa gtaacctttt aaatatattg gctttccatt gtaaattaag agttgtagat
     1801 aggtgcatac ctacccatgc ttgtaacagg ctaattaact gttgcaggat agccagtaaa
     1861 ccaaatccca aagtaagggt cagtaataaa tttttatcag cagttacaat gacatggtct
     1921 attacccatt gcataaagaa tggactaacc aatgcaaaga cttccaaaga aatagctaat
     1981 ataagcattt gaattaaaga gcgttttaag cctgaaatcc cccttaatag agataatatt
     2041 ttgattttct ttgtttcttt tttctcttca aaatgggtat tggggaataa ttctagggca
     2101 atccctgtga atttttgtga aacttcgtcc attttgattt ttcgcatacc gacagcaggg
     2161 tccataatga cgatactgtc tttggaaatg gaacaaagta caacaaaatg gtttaagttc
     2221 caatggagaa tgcagggtag ttgtaaattt gacagctcat ctaactctaa acgcaaagct
     2281 cgtggcgtta aattcatttc attgccaaat ctcatgatgt ctgcaagatt tgcgcccttt
     2341 aatgacaggg tgtatttttg gcgtaacgtt cttaaatcag tgtgaaagcc ataataggac
     2401 aagatggatg tcaggcatgc taaaccacat tcagcaactt ctgtttgcag aatgacaggt
     2461 agctttttgt taaatccaaa ggacagtctt gataaataat ccatttttaa ttgatttttc
     2521 ctgaaatgct gtaaagtggg tcaagtaccc attcgtacaa tttttttcgt tcatggagaa
     2581 tatctgcttc taaaatcatg ccaatttgaa gcggcttgtt ttctccgtat gctttaatcg
     2641 tttgtttttc caatttaact ttcacaagat aggcaggttc atttaataag gttgggttag
     2701 tgaaaatgat acctaaacct gatagctctt gtttaccgag agcagttctg gcaactgaaa
     2761 taatttctcc tgtggcatgt ccaaattttt ggtaagggta cgcttggtaa cgtaaaacaa
     2821 ctttatcttt cggtttaata aaaccaacag ctttactggg tatgtaaaga ttggcgacca
     2881 attcagtttg ttcagggaca atgcttaaca gcaatttaga cggttcaact tgttgcccta
     2941 tatcaacatt aattgttgat atataacctg atttactagc tcgtatggtt tgttcggatt
     3001 tcaaatcaaa atccaaaatt tcttggttca tttccgtaat cgcacggttg agttggctca
     3061 attcggtttt atggcgttca ggcaggctgc ttaatgtaat tttctgttca tcaagttccc
     3121 tgattgcatt attttgttca agttttaggc tctccaaacg tgagcgttgt tccaataaat
     3181 ggctttcggc ggtcatctta tcttgttggg atactgcgcc ttgactggct aaaaacttgt
     3241 tcttgttaag ggttttttcc gctaaacgaa tttgacgatt ttgccctgta atttgctgtt
     3301 taatattctc taattgattg tttaaacgat gaatgttgtt atgaacattt ttttgctcat
     3361 tttgatgaat gcgctttaaa cgttccaatt cttgtaatgc caaagttttt ttaaggttgg
     3421 cttctgctgc caatttggct tgtacgtttc ctttttcgcc aaaacgcgat gtggaaagtt
     3481 tgaacaatgg ttcgccagct ttgacaaagt taccatcttc aacaaattta tgcgtaatcg
     3541 tgccgatatc ggaagagtaa acacgaacca cccccatagt tggaagtaat tgaccttcaa
     3601 cggttgtttt attggtatag ctaccaaaaa tcaaaaagat aatgatacac agagcaatga
     3661 gaaaagcgca aaaagtcaga aataaaaaag agaatggacg ggtcaagata acctgacctg
     3721 tccacttatt ttgttgggct acaaagactt cttttcggaa taagtgggac atttattatt
     3781 atttcttaaa aaaatggata gaaaaacacc aataattaaa tacttatgcc taataacata
     3841 aatttgctat tgattgatgt ttctatttta attacattaa atttaaccaa taatccagaa
     3901 atggttgcag ctaaaatgca aaagacagtg gcgtaaatgg tttcagtatt cataattttt
     3961 ctctttcaaa attgttcaat ctaaatagaa aaaggtaact tcaatacata ttgctgtaac
     4021 tgaaattacc ttttccttaa tgatgtaatt atcttatggc ttcatcatgc cacgaccgat
     4081 attgtatccg ccagcagcag agaaaatacc agctccaatt gcgccaaccc agcctactgg
     4141 tcctgtccac ttgttccgtt gagctacaaa gacttctggt ctgaaaaatg agtgattgtt
     4201 agacatgtgt acttatttat gtttctttga ttgggataaa tttgtaaaaa caaaaaaaag
     4261 gcaagttgtt attatagaag aacttaaaat gcttaacata ctcattgagg tttgtaccac
     4321 ataatgagat acgagataat ttgttgggag taaaatcaaa aaaagattaa atatttaaaa
     4381 taatcactat attttttcat tatttgttcc tttttgtatt taagttctta tgaaaaacta
     4441 gggtattttg aatagaaaat atcaaaatac cctagtttta ttaaggaata ttaccaccaa
     4501 caagtgcttc catattgtac agcaccagtg attgcaccac caatagctcc gaatttcgca
     4561 cttggaatag caccaatacc acctgcaaat gaaccaacaa ttgccccacc agctgctcca
     4621 cctaatgcac taccaatggt attttttgag aaatcacgcc agttacaagc agcaccagaa
     4681 acttgttaaa tttcattcaa agtcaaaact tgcataatat tcacctttgt taagtgtggt
     4741 tgagaaaaaa gtaaattttc atcgttactc attatttgca atcatgcata tactgtaacc
     4801 aagcactata ttcagttgga tcatagtttt tcctactggg ttgtctgata tgactattgg
     4861 cactattggc acaattggga ttagcaactt tattgtgagt acctaatgga ttgatatttc
     4921 ctgtaaagtg gctattgcat gcgcttaatg agcatagatt tattaatgtc agaaaggata
     4981 aaacaaaaaa tcttaccatt ttttactaat accaaaagta ggtttcgaaa actgtacacc
     5041 aagaccttgt acatatccaa attgcttgct aacagaaaac tctactccac tattgttagg
     5101 ggaataggaa gcaccaattt taccaacagc aaccatatct tttttaccta ggttgccgcc
     5161 accctgtgca aagatatgga atttgccacc tgacacttca actaattcag aggtgtgtaa
     5221 ctctttcatg attttctcct gtaaagaagt atggttggaa atgtaaatca gaattaacct
     5281 ttcttaagtt taatttaata ctttttttgc aagtatttta ttttaaatta aatcaatatt
     5341 ttaaaaatat ttacttgtat actgaatatt tacttgtata ctgaaaaaga aactcctaat
     5401 ggtggagtgg ggcttttgtt taagtaagca ttgaaaaaat ttaaatttcc cattatgatt
     5461 aacttaatgc aagagctttt tcaggacgta caaaccagcg aacgggcgtt ctgatgtggg
     5521 caggttggtt gtcgctaacc aatttcagta gctcaatcgt cagattggta tccggcccta
     5581 tcaagctaag gagaggctgc ggctactaca caaagcacct gaaattattg ggtgcttttg
     5641 tctttttatg gcattgtacc aatttgtgta ccacgagggc ttgttcgacc aaacgcggta
     5701 acaactgaat acacactttc cccctcaact tctttgcgtt ctaaaacgac tgtcccaatc
     5761 cgagaataga caatcatagg acgatgattg ccccttacat cactaaattc actaaaaatt
     5821 tttgcgcctg attgaaaaat catttccaca taaaagggtt acacctgttt catcgtggct
     5881 taatccaaac cgcgttaaat ctgctttgtg ttctgccaaa atgtgaatca caccaaagcc
     5941 gtgattaacc tttttgtgtt cgccgtgttt taaaacaatt tgacctgccg ggaagtctgc
     6001 tctattgttc ggacaatagg gggaatatac caattacttt aactacatca ttttttgaca
     6061 tttttcttgc ctttcaattt aaaatccaaa atcatactgc cataatttag caatccaaaa
     6121 aaatttaggc agcagtcatg gtttcgtatt ttagaaaacg aaacttggtt tggtgttttg
     6181 aagcatttca gtacacaaac atggaatttt aaattgtctt gtgttgcctt gatttaggat
     6241 gttccagttt tttaataaat agtttggggc tgtcctagat aactaggaca aacttgattt
     6301 tactaattgt tttaaaatgg aacaagaact tttatctcac tgttgttaaa acgtc
//
LOCUS       DAXHNP010000119         6023 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.119, whole genome shotgun sequence.
ACCESSION   DAXHNP010000119 DAXHNP010000000
VERSION     DAXHNP010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6023
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.119"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(57..1460)
                     /gene="mtrE"
                     /locus_tag="ACFM5C_001624"
     CDS             complement(57..1460)
                     /gene="mtrE"
                     /locus_tag="ACFM5C_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MtrE"
                     /protein_id="HFC6069293.1"
                     /translation="MDTTLKTTLTSVAAAFALSACTMIPQYEQPKVEVAETFKNDTAD
                     SGIRAVDLGWHDYFADPRLQKLIDIALERNTSLRTAVLNSEIYRKQYMIERNNLLPTL
                     AANANDSRQGSLSGGNVSSSYKVGLGAASYELDLFGRVRSSSEAALQGYFASTANRDA
                     AHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREETYKLSELRYKAGVISAVALRQQE
                     ALIESAKADYAHAARSREQARNALATLINQPIPDDLPAGLPLDKQFFVEKLPAGLSSE
                     VLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGTVGTGSAELGGLFKSGTGVWS
                     FAPSITLPIFTWGTNKANLDVAKLRQQAQIVAYESAVQSAFQDVANALAAREQLDKAY
                     DALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYAAEGAALSAQLTRAENLAD
                     LYKALGGGLKRDTQTDK"
     gene            complement(1515..4718)
                     /gene="mtrD"
                     /locus_tag="ACFM5C_001625"
     CDS             complement(1515..4718)
                     /gene="mtrD"
                     /locus_tag="ACFM5C_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MtrD"
                     /protein_id="HFC6069294.1"
                     /translation="MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTIT
                     LHATYPGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENL
                     AQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNI
                     VPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIG
                     SLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSS
                     TRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEIS
                     IEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLT
                     MFAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISV
                     FVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHEEKKG
                     FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQ
                     GFVMVSVQLPAGATQERTNATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFA
                     ILKDWNERTAPGSDAVAIAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD
                     RNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDINRAAAAAQGISF
                     ADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPL
                     STIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLEW
                     GGQSREEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVT
                     GRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAAL
                     EAARLRFRPIIMTSFAFILGVVPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVP
                     LFYVVVRKFFKETAHEHEMAVKHAAEAGITGSDDSQH"
     gene            complement(4730..5968)
                     /gene="mtrC"
                     /locus_tag="ACFM5C_001626"
     CDS             complement(4730..5968)
                     /gene="mtrC"
                     /locus_tag="ACFM5C_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit MtrC"
                     /protein_id="HFC6069295.1"
                     /translation="MAFYAFKAMRAAALAAAVALVLSSCGKGGDAAQGGQPAGREAPA
                     PVVGVVTVHPQTVALTVELPGRLESLRTADVRAQVGGIIQKRLFQEGSYVRAGQPLYQ
                     IDSSTYEANLESARAQLATAQATLAKADADLARYKPLVAAEAVSRQEYDAAVTAKRSA
                     EAGVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEGTLLNAGDTTVLATIRQTNP
                     MYVNVTQSASEVMKLRRQIAEGKLLAADGVIAVGIKFDDGTVYPEKGRLLFADPAVNE
                     STGQITLRAAVPNDQNILMPGLYVRVLMDQVAVDNAFVVPQQAVTRGAKDTVMIVNAQ
                     GGMEPREVTVAQQQGTNWIVTSGLKDGDKVVVEGISIAGITGAKKVTPKEWAPSENQA
                     AAPQSGVQTASEAKTASEAE"
BASE COUNT         1352 a         1708 c         1618 g         1345 t
ORIGIN      
        1 aaagaaatgc cgtctgaaac cttatcgttt cagacggcat tttattgccc gaccggttat
       61 ttgtcggttt gggtatcccg tttcaatccg ccgccgagtg ccttgtacaa atcggcaagg
      121 ttttcggcgc gggtcagttg tgccgacaaa gccgcaccct ccgccgcata gctgctgcgt
      181 tccgcatcga gcaagtcgag cgcgccggat acgccgtgct tgtaacgcag gccgaccaag
      241 cgcaacgctt ctttagaggc gcggctttgt ttgcttaaag cgtcataggc tttatccagc
      301 tgctcgcgcg ccgccaatgc gtttgccacg tcttgaaatg cggattggac ggcggattca
      361 taggcaacga tttgtgcctg ttggcgcagc ttggctacat caaggttcgc cttgttcgta
      421 ccccaggtaa aaatcggcag ggtaatagac ggcgcgaacg accaaacgcc cgtgccgctt
      481 ttgaacaacc cacccaattc ggcagaaccc gtaccgacgg ttccggtcag gcggatggat
      541 gggaaaaagg cggcgcgtgc cgcaccgata ttggcgtttg cctgtttgag cgcgtgttcg
      601 gcggcgcgta tgtcgggacg gtcgagcaat acttcggaac tcaaaccggc cggcagtttt
      661 tcaacaaaaa actgcttgtc caacggcaaa ccggcgggca ggtcgtcggg tatcggttgg
      721 ttaatcaagg ttgccaaggc attgcgcgcc tgttcgcggc tgcgcgcggc atgggcataa
      781 tcggctttgg cagattcgat tagggcttcc tgctgacgta gggcgacggc ggaaatcaca
      841 cctgccttgt aacgtaattc ggacagcttg taggtttcct cgcgcgtttt caaaacacgt
      901 tgcgccaaag acatcgcttc ttcggcataa cgttcgttga aataggcttt ggcaacggtg
      961 gcaatcaggc tcaaatgtgc cgcatcgcgg ttggcggtgc tggcgaaata gccttgcagt
     1021 gccgcctcgc tgctgctgcg tacacgcccg aacagatcga gttcgtaaga tgccgcaccc
     1081 agtccgactt tgtagctgct gcttacattg ccgccgctca agctgccttg gcgcgagtcg
     1141 ttcgcattgg cggcaagcgt gggcaggagg ttgttgcgct caatcatgta ttgtttgcgg
     1201 tagatttcgc tgttcaatac ggcggtacgc aaactggtat tgcgctcgag tgcgatgtcg
     1261 atcagctttt gcaggcgcgg gtcggcaaaa tagtcgtgcc aacccaaatc gacggcgcgg
     1321 atgccgctgt cggcggtatc gtttttgaac gtttcggcaa cttcgacttt gggctgctcg
     1381 tattggggaa tcatggtgca ggcggataat gcgaaggctg ctgcaacaga agtcaaggtg
     1441 gttttcaatg tagtatccat aaaaaagtcc tgatgccgtc tgaaaacccg tgggcgttca
     1501 gacggcatgg ttgcttaatg ttggctgtcg tccgaaccgg tgatgcccgc ttcggcagcg
     1561 tgttttactg ccatttcgtg ttcgtgcgcg gtttctttga agaatttgcg caccaccaca
     1621 tagaaaagcg gaacaaggaa caccgacaag agcgtgccga tgagcatccc ccagaatacg
     1681 gttgtaccaa tggcgcgctg gctggcagaa cttgcaccgc cggcaatata caggggaacc
     1741 acgcccaaaa taaaggcaaa cgaggtcatg ataatcggac ggaaacgcag gcgggctgct
     1801 tccaaagcgg cttcaaccgc gcttttccct tgcgcttgaa ggtctttggc aaactcgata
     1861 atcaaaatcg cgtttttcgc actcaaaccc atcacggtaa cgaaaccgac ttgaaagtag
     1921 atgtcgttgg cgaacgaggg aacgctgccc aacagtcctt caaacaggtt gcgcccggtt
     1981 acgcccgcag ccgcaccgat caaacccaac ggaatcacaa ggatgaccgc cagcggaatc
     2041 gaccagcttt cataaagcgc ggcaagtacc aaaaatacgg ctgcaaccgc caaaccgtac
     2101 aaaatcaggg tttgcgagcc gccttttgcc tcttcgcgcg actgtccgcc ccactccagg
     2161 ctgtaaccgc cgcccaattc gtcaaccatt ttttgaaccg ccgccatagc ctgcccggtg
     2221 gaaacgccgg ttgcaggcga agcggacagc ttcatcgaag gataaccgtt gaagcgtacg
     2281 ctctgttccg taccgttttc ccaagaaaca gtagcaatgg tggaaagcgg tacggcgacg
     2341 ccggatttgt tcggcacggt caggttcaaa atatcggcag gctgcatacg ggcatcctcg
     2401 tcggcctgca ccatcacgcg ttgcagacgg ccttggttcg ggaagtcgct gacataagac
     2461 gaactcagcg cacttgccaa tgcggtgcgg atgtcggcaa acgaaatgcc ttgcgccgcc
     2521 gcggcggcac ggttgatgtc gattttcaac tgcggcgagt cttccaaacc gccggcacgg
     2581 acggtgctgg ggtcaaacaa accgctggca cgcattttct gaatcaactc gttgcgcttc
     2641 gccagcaatg cggtatggcc ggtattgttg cggtcttgca ggttgatgct cagacccgaa
     2701 ccgttgccca actccagaat cggaggcggg acgacggcga tgccaaaacc gtctttaagc
     2761 gtccccatca tcatacccgt cagcttgccg gcaatcgcaa cggcatcgct gccgggcgcg
     2821 gtacgctcgt tccaatcttt caatatggca aaacccatcg ccatattctg accgctgccc
     2881 gaaaagctga agccggaaac ggtaatgatg ttttctattt caggaatgct tttcgccagt
     2941 tgggtaactt gcgccaaagt cgcattggtg cgctcttggg tcgctcctgc aggcagttgc
     3001 acgctgacca tgacgaagcc ttggtcttcg gtcggcagga atgaagtcgg cagacgcata
     3061 aacaggaaca cgcccacaac cgccaagccg atatagacaa ccatcatgcg gaaagtctta
     3121 cgcagcactt tggcaacccg gccttcgtaa ccgtgcgtcc aactgttgaa tttcttgtta
     3181 aaccagccga agaaaccttt tttctcttcg tgatgccctt tcgggattgt cttcaacatt
     3241 gtggcacaca aagcaggggt aagggtcagc gcaaggaagg cggagaatgc gattgatgac
     3301 gccatcgtca gggcaaactg tttgtaaata ttgcccgtcg ccccgctgaa catcgccaac
     3361 ggtacgaaca cggaaatcag aacggcggta ataccgatga ccgcgcccga aatctgaccc
     3421 atcgcttttt tggtcgcttc tttgggcggc aagccttcac ccgccataat gcgctcgacg
     3481 ttttcaacca ccacaatcgc gtcatcgacc acgatgccga tgaccaaaac catcgcaaac
     3541 atggtcagta cgttaatcga catgcccata taagagatga aggcgaaacc gcccaacagc
     3601 gaaatcggta cgacgatggt cggaatcagc gtataacgga tgttttgcag gaagagatac
     3661 attacgacaa acaccagcac catcgcttcg attaaagtat gaatcacttt ttcaatcgaa
     3721 atttcgacga atttggaagt atcgtaaggg gttttccagc tcataccctg aggaaagtat
     3781 ttttccaacg tcgccatgcg ttctttaacc gcctttgccg tcgccatcgc attgccgctg
     3841 ttggacagca tcaccgccat accggtggta tttacaccgt tcagacgggt tgaggaagaa
     3901 tagtcttcca tacccagtcc gacccttgcc acatccttca ggtaaacatt agaaccgtcg
     3961 gtattggcgc ggaggatgac gttgccgaat tcttctgccg tacccaactg cccttgcgcc
     4021 gttacggtag ccgtaaccgt ctgtccgcga acggcgggaa gcgaaccgat agaacccgct
     4081 gaaatctgga cgttctgggc ggacagcgcg ctgccgatat cggcaaacga caaattgtag
     4141 ttttgcagtt tcttaggatc aacccaaatc cgcatcgcgc gttgcgcgcc gaacaggcgt
     4201 acctgcccca cgccttcgat acgctgcagt tcgggaacga tattacgctg cgcgtagtcg
     4261 ttcatctctt cggttgactg cacatccgac gaaagcatca caatcatcag gaaattggaa
     4321 cgcgccttgg atacggttac gccgtattgc tggacggttg ccggcagcgt gctcaatact
     4381 tcggaaagct tgttctgcac ttccacctgc gccagattct cgtcggtatc gggcgtaaag
     4441 gtcaggctca cgctgccgct gccgctcgaa tcggcggaag tggacatata atccaaacct
     4501 tccacgccgt tcatattccg ctcgatcacg gaaagcacgc tgtcttccat tacctgcgcg
     4561 gacgcacccg gataagtggc gtgcaaagta atggtcgggg cggcgacaga cggatattgc
     4621 gaaacaggca ggcttttgat gccgaaaata cccgccgcaa taatgaaaat cgaaataacc
     4681 cacgcaaaaa tagggcggtc gataaaaaat ttagccatcg atgccttcct tattccgctt
     4741 cagaagcagt tttggcttca gatgccgtct gaacgccgga ttgaggcgcg gcggcttggt
     4801 tttcagacgg cgcccattct ttgggcgtta cctttttcgc acccgttata ccggcgatac
     4861 tgatgccttc cacaaccacc ttgtccccgt ccttcagacc cgacgtaaca atccaattcg
     4921 taccctgctg ttgcgcaacc gttacctcgc ggggttccat accgccttgg gcattcacaa
     4981 tcatcacggt atctttcgca ccgcgcgtta ccgcctgctg cggcacaaca aatgcgttat
     5041 ccaccgccac ttggtccatc agcacgcgca catacaggcc gggcatcagg atattctgat
     5101 cgttcggtac ggcggcgcgc agggtaatct gaccggtcga ttcgttgacg gccggatcgg
     5161 caaacagcag gcggcctttt tcagggtaaa ctgtgccgtc gtcaaatttg atgccgaccg
     5221 caatcacacc atccgccgcc agcagtttgc cttcggctat ctgacggcgc agtttcatca
     5281 cttcggatgc agactgggta acgttcacat acatcggatt ggtttggcgg atggttgcca
     5341 gcacggtcgt atcgcccgca ttcaacagcg taccttcgga aactttggac tgaccgataa
     5401 agccggaaat cggcgcggta atgcgcgaac ggttcagatt aatgccggca gatttgattg
     5461 ccgcctgtgc tgctttgaca cctgcctcgg cagaacgttt cgccgttacc gcagcatcgt
     5521 attcctgccg gctgacggct tcggcggcaa ccaaaggctt gtatcgcgcc aaatccgcat
     5581 ccgctttggc aagcgttgcc tgagccgttg ccagttgcgc gcgcgcgctt tccagatttg
     5641 cttcataagt ggaactgtcg atctgataca gcggctgtcc ggcacggaca taactgcctt
     5701 cttggaacag gcgtttttgg ataatgccgc caacttgcgc acggacatcg gcggtacgca
     5761 gcgattccaa acgtcccggc aactcgacgg tcaacgcaac ggtttgcgga tggacggtta
     5821 cgacaccgac gacgggagcc ggtgcttccc gacccgcagg ctgcccgccc tgcgccgcgt
     5881 ctccgccttt accgcaagac gacagtacca atgcaacggc ggcagccaac gcggccgcac
     5941 gcatcgcctt aaaagcataa aaagccatta tttatcctat ctgtctggtt tgatgtaaag
     6001 ggttttgcca atcaacaggc att
//
LOCUS       DAXHNP010000120         5994 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.120, whole genome shotgun sequence.
ACCESSION   DAXHNP010000120 DAXHNP010000000
VERSION     DAXHNP010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5994
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.120"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            165..1277
                     /gene="nadA"
                     /locus_tag="ACFM5C_001627"
     CDS             165..1277
                     /gene="nadA"
                     /locus_tag="ACFM5C_001627"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HFC6069296.1"
                     /translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETADRL
                     KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEAGTLVVAG
                     VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
                     VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYIRRETGADMLLWQGSCIVH
                     NEFKGQELAALKAEHPDAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
                     TDLGILHEMQKQAPDKEFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
                     LLDRKLGEAAKLPLQRMLDFAAGLKRGDVFNGMGPA"
     gene            1329..2837
                     /gene="nadB"
                     /locus_tag="ACFM5C_001628"
     CDS             1329..2837
                     /gene="nadB"
                     /locus_tag="ACFM5C_001628"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HFC6069297.1"
                     /translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRH
                     AQGGIAAAWSGEDDIEKHVADTLEASAGLCDEAAVRTILSQGKPAIEWLLAQGVAFDR
                     NHNDLHLTREGGHTCRRIAHVADYTGEAVMQSLLAQIRRRPHIRVCERQMALDIQTES
                     GVACGLIVLDRRTQETYLIRARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCA
                     VENLEFIQFHPTGLARSSENGRTFLISEAVRGEGGILTNQAGERFMPYYDRRAELAPR
                     DIVARAIAAEIAKQTQDFVSLDISHQPAAFVRRHFPSIHRHCLSQCGLDITRQAIPVR
                     PVQHYTCGGIQTDPCGRTSLPQLYSLGETACTGLHGANRLASNSLLECVVTARLAAQT
                     IADGQAFQAKTSPRPSESLSSEAGIFSDGIQSAFSRPVLQAFNQRHLGILRNDTGLRC
                     AIAQLRLWKQNQTEPHTASEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
     gene            complement(3015..3680)
                     /gene="pgmB"
                     /locus_tag="ACFM5C_001629"
     CDS             complement(3015..3680)
                     /gene="pgmB"
                     /locus_tag="ACFM5C_001629"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008801 - beta-phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HFC6069298.1"
                     /translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGIGIDRKFNEQL
                     KGVSRDDSLKRILAHGGKTVGEAEFAELTRRKNDNYVEMIQAVKPEDVYLGILPLLEA
                     LKANGKKIALASASKNGPFLLERMGLTHFFDTVADPAAVAHSKPAPDIFLAAAEGVGA
                     DIRRCIGIEDAAAGVAAIKAAGALPIGVGKAEDLGSDIALVSDTAELTYAYLQNVWAQ
                     SGR"
     gene            complement(3693..5951)
                     /locus_tag="ACFM5C_001630"
     CDS             complement(3693..5951)
                     /locus_tag="ACFM5C_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HFC6069299.1"
                     /translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
                     ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVKIFVDGQEVDL
                     AKNDVAGFSVELDMQHGVLRRSFTVFGVRFDVCKFLSVAQKELAVIRWEAVSVDGKTH
                     QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDSLSYIAAQTVANPFGVEQFIVNAEQ
                     TFAGSFKALGGSQTDWQVSNSFESEVGGTPKTFEKRVIVTTSRDYQGLEAVKAAGRAL
                     SEKVAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
                     LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
                     QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDESYLAKEGLE
                     VLVEVSRFWADRVHFSKRSGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
                     AKYPRPDLNVSAAELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
                     PLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFNIDEKRRNFDFYEPMTVHESSLSPC
                     IHSILAAELGKEEKAVEMYRRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
                     TWGGKLSFAPFLPSAWTGYTFHINYRGRLIKVAVGKENVVFTLLKGEPLDLQVYGKDI
                     TLNGSHTAALEK"
BASE COUNT         1241 a         1672 c         1747 g         1334 t
ORIGIN      
        1 ccaaagcggt ttgtcggaac gaagcgggtc ggttttacgg tatcgcaaac ctgttttcag
       61 acgaccttgc ttattatact caatttgagc ataatataaa aatatttcaa aatataaacg
      121 gcaaatcttt atgccgtctg aaaaaccagc cataaggaag tctcatgcaa accgccgccc
      181 gccgctcgtt cgactacgat atgccactca tccaaacgcc gacttccgcc tgccaaatcc
      241 gtcaggcgtg ggcgaaggtt gccgacacgc ccgaccgcga gacggcagat cgtctgaaag
      301 acgaaatcaa ggctttgctg aaggagaaaa acgcggtctt ggtggcgcat tattatgttg
      361 atccgctgat tcaggatttg gctttggaaa cgggcggatg cgtgggcgat tctctggaaa
      421 tggcacgctt cggcgcggaa cacgaagccg gtacgctggt ggtggcgggc gtgcgtttca
      481 tgggagagag cgcgaaaatc ctctgccctg aaaaaacggt gctgatgcct gatttggaag
      541 cggaatgttc tttggatttg ggttgcccgg aagaggcgtt ttcggcgttt tgcgaccaac
      601 accccgaccg cacggtggtg gtgtacgcca acacttccgc cgccgtgaaa gcgcgtgccg
      661 attgggtggt aacgtcttcg gtggcgttgg aaatcgtgtc gtatctgaaa tcgcgcggcg
      721 agaagctgat ttgggggccc gaccgccacc tcggcgacta catccgccgc gaaacgggcg
      781 cggatatgct gttgtggcag ggttcgtgca tcgtccacaa cgaatttaaa gggcaggagc
      841 tggcggcgtt gaaggcggaa caccccgatg cggtggtgct ggttcatccc gaatcgccac
      901 aaagcgtcat cgaactgggc gacgtggtcg gctcgaccag caaactgctg aaagctgccg
      961 tatcacgccc cgaaaaaaaa ttcatcgtgg cgaccgattt gggcatcctg cacgaaatgc
     1021 aaaagcaggc gcccgacaaa gaatttatcg ccgcgccgac ggcgggcaac ggcggaagtt
     1081 gcaaaagctg cgcgttctgc ccgtggatgg cgatgaattc gctgggcggc atcaaatacg
     1141 ccctgacaag cggacgtaac gaaatcctgt tggacaggaa gctgggcgaa gccgccaaac
     1201 tgcctttgca gcgtatgctc gacttcgcgg caggactcaa acgcggggat gtgttcaacg
     1261 gcatggggcc cgcctgattt gccgtccata ttgccgtttc agacgacctc tccaacaagg
     1321 acaacaccat gcaaaccgat tgcgacgtat tgattgccgg aaacgggctg gcggcactga
     1381 cgctcgccct gtcgctgcct gaatcgttcc gcatcgtcat tttgtgcaaa aaccggctgg
     1441 acgacaccgc cagccgtcat gcgcaaggcg ggattgcggc ggcgtggtcg ggagaggacg
     1501 acatcgaaaa acacgtcgcc gatactttgg aagcgagcgc aggtttgtgc gacgaagccg
     1561 ccgtccgcac catcctgtcg cagggcaaac cggcaatcga atggctgttg gcgcagggtg
     1621 tggcgttcga ccggaatcat aacgacctgc acctgacgcg cgaaggcggg catacctgcc
     1681 gccgaatcgc ccacgtcgcc gactacacgg gcgaagccgt catgcagagc ctgcttgccc
     1741 aaatacgccg ccgcccgcac atccgcgttt gcgagcggca gatggcgttg gacattcaaa
     1801 ccgaatcagg tgtggcgtgc ggactgatcg tccttgaccg ccgaacgcaa gaaacctacc
     1861 tcatccgcgc ccgccatacc gtactcgcag gcggcggctt gggacagatt tacgccgcca
     1921 ccaccacgcc gcccgaatgc acgggcgacg ccatcgccat ggcgatacgc gcaggctgcg
     1981 cagtcgaaaa cctcgaattt atccaattcc accccacagg cttggcaaga tcgtctgaaa
     2041 acggccgcac cttcctgatt tccgaagccg tgcgcggcga aggcggcatc ctgaccaacc
     2101 aagcgggcga acggtttatg ccgtattacg accgccgcgc cgaactcgcg ccgcgcgaca
     2161 tcgttgcccg cgccatcgcc gccgaaatcg ccaaacaaac gcaagacttc gtctcactcg
     2221 atatcagcca tcaacccgca gcgttcgtcc gccggcattt cccgtccatc catcggcact
     2281 gtttatccca atgcggcctg gatatcacgc gccaagccat ccccgtccgc cccgtgcaac
     2341 actacacctg cggcggcatc caaaccgacc cctgcggcag aacttccctg ccgcagctct
     2401 actccttagg cgaaaccgcc tgcaccggct tgcacggagc caaccgcctt gccagcaact
     2461 ccctgctcga atgtgtcgtt accgccagac ttgccgccca aaccatcgca gacggacaag
     2521 cattccaagc caaaacgtct ccaaggccgt ctgaaagcct ctcctccgaa gcaggcatct
     2581 tttcagacgg catccaaagc gcattcagcc gccccgtcct gcaagcgttc aaccaacgcc
     2641 atctgggcat cctccgcaac gataccggtc tgcgctgcgc catcgcccag ctgcggcttt
     2701 ggaaacaaaa ccaaaccgaa ccgcacaccg cgtccgaata cgaaaaccgc aacctgctcg
     2761 aatgcagcct cgccgtcgcc caagccgcat acaggcggag acagaacatc ggcgcgcatt
     2821 ttaatagtga ttgttaaggt tggctggtta gaaaaaaaat cgttcaaata aatttgaata
     2881 gcatggttaa gaaattggca tttagttttt agggttgcgt aagttgggtt atcaatctgt
     2941 tctaaaagca gaaaggccgt ctgaaacact gttcagacgg ccttttactt ccttgacact
     3001 ttatctgacg cgttttacct gcccgactgt gcccacacgt tttgcaggta ggcgtaggtc
     3061 agctcggcgg tatcggacac cagcgcgatg tcgctgccca agtcttcggc tttgcccacg
     3121 ccgataggca aggcgccggc ggctttgatg gcggcgacac ctgcggcagc gtcttcaatg
     3181 ccgatgcagc ggcggatgtc cgcgcccacg ccctcggcgg cggcgaggaa gatgtcgggg
     3241 gcgggtttgg aatgcgcgac ggcggcaggg tcggcgacgg tgtcgaagaa gtgggtcagc
     3301 cccatgcgtt cgagcaggaa ggggccgttt ttactggcgg acgcaagggc gatttttttg
     3361 ccgtttgctt ttaatgcttc cagcagcggc aaaatgccga gatacacgtc ttcgggtttg
     3421 actgcctgaa tcatctcgac gtagttgtcg tttttgcggc gggtcagttc ggcgaactcg
     3481 gcttcgccga cggttttgcc gccgtgtgcg aggatgcgtt tgagcgaatc gtcgcgcgac
     3541 acgcctttga gctgctcgtt aaacttgcgg tctatgccga tgcccagttc ttcggcgagc
     3601 tttttccatg cgcggtagtg gtattcggcg gtgtcggtga tgacgccgtc gagatcgaag
     3661 agcactgcgg taaacgtcat tttgcgccct ccttattttt ccaacgcggc ggtatggctg
     3721 ccgttgagtg tgatgtcttt gccgtacacc tgcaaatcga gcggctcgcc tttgagcagg
     3781 gtgaagacga cgttttcttt gccgacggcg actttaatca gacggcctcg gtagttgata
     3841 tggaaggtgt agcctgtcca cgcgctcggc aggaacggtg cgaagctgag tttaccgccc
     3901 caagttttca tttgggcgaa accttggacg atggcgagcc acgagccggt catagaagta
     3961 atgtgcaggc cgtcttcggt gtcgttgttg tagttgtcca agtccaggcg tgcggtgcgc
     4021 cggtacattt ccacggcttt ttcttctttg cccagttcgg cggcgagaat agagtggata
     4081 cacggcgaca acgagctttc atgcacggtc atcggttcgt agaagtcgaa gttgcggcgt
     4141 ttttcgtcga tattgaaacg gtcgccgaag aaatagatgc cttgcaatac gtccgcctgt
     4201 ttgataaagg gcgaacgcag gattttgtcc cacgaccatt tctggttgag cggcaaatcg
     4261 tcgggcgaaa gcgcggacac ggggcggatg tctttgtcga ggaagccgtc gtgttgcacg
     4321 aatacgccga gttcttcgtc atgaggacgg tacatattcg cgctgatgtc cgcccatttt
     4381 tccaactcgg cggcgctcac gttcaaatcc ggacgcgggt atttcgccag ggcttcgcgg
     4441 gtgtagtcca atacccatgc ggcgagggtg ttggtgtacc agttgttgtt gatgttgttt
     4501 tcgtattcgt tcgggccggt tacgccgtga atcatgtatt tgccgctgcg tttggagaag
     4561 tggacgcggt ccgcccagaa gcgggacact tcgaccaaga cttccaagcc ttctttggca
     4621 agatagcttt cgtcgccggt gtagttggtg tagttgtaga tggcgtaagg aatcgcgcca
     4681 ttgcggtgga tttcctcgaa ggtgatttcc cattcgttgt ggcactcgat gccggtaaac
     4741 gttaccatcg gatagagtgc gcccgccaag ccctgttcgc gcgcgttgtg ctgcgcctgc
     4801 ggcagttggt tgcggcggta ttgcagcagg ttgcgggtaa cttcgggttc cgccagtgcg
     4861 aggtagagcg gtacggcata ggcttcggta tcccaatagg tcgcgccgcc gtatttttcg
     4921 ccggtaaagc ctttggggcc gatgttcagg cgcgcgtctt cgccgtagta ggtggagaac
     4981 agttggaaca gattgaaacg gatgccttgc tgcgcttcgt cgctgccttc gatgaccacg
     5041 tcggcgattt cccaacggtg cagccagcct gctttgtgcg cgtccagcaa ggtttcaaac
     5101 gcaacgcctg cgactttttc cgacaaggcg cggcctgcgg ctttcactgc ttccaagccc
     5161 tgataatcgc ggctggtggt aacaatcacg cgtttttcaa aggttttggg cgtgccgccg
     5221 acttcggact cgaaagaatt ggagacctgc cagtcggttt ggctgccgcc gagggctttg
     5281 aagctgccgg cgaaagtttg ctcggcgttg acgataaatt gttccacgcc gaagggattg
     5341 gcgacggttt gggcggcaat gtaggagaga ctgtctgaaa cgcctttgtc caatacctgc
     5401 cagaattttt cttcgtagtt ggagtcttcg tttttcacgt cggcatcgat gatggaatcg
     5461 atgcggactt ggtgggtttt gccgtcaacg gatacggctt cccagcggat gaccgccaac
     5521 tctttttgcg cgacggacag gaatttacac acatcgaaac gcacgccgaa tacggtgaac
     5581 gagcggcgca acacgccgtg ctgcatatcg agttcgacgg agaagccggc aacatcgttt
     5641 ttcgccaagt ccacctcttg tccgtcgaca aagattttga ctttgctgaa attgagcgcg
     5701 ttgatggctt taccgaaata tttggggtag ccgtttttcc accagccgac gcgggttttg
     5761 tcgggaaacc acacaccggc gatgtaggta cccaagtggc tgtcggcgga ataggtttcc
     5821 tcaaagctgc cgcgcatacc catatagccg ttgcccaaac tggtcaggct ctcttgcagc
     5881 cgtttgtgtt ctttttccag ctttgccgaa cgcagcgtcc aagggctgat ttccataatt
     5941 cttgtgtaca tttatgaagc tcctgtttgg attgatttga gggaatggtg aaat
//
LOCUS       DAXHNP010000121         5990 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.121, whole genome shotgun sequence.
ACCESSION   DAXHNP010000121 DAXHNP010000000
VERSION     DAXHNP010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5990
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.121"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..79)
                     /locus_tag="ACFM5C_001631"
     CDS             complement(<1..79)
                     /locus_tag="ACFM5C_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6069300.1"
                     /translation="MKPAVWAALLLCACTSNFGDREHQFL"
     gene            282..1610
                     /gene="miaB"
                     /locus_tag="ACFM5C_001632"
     CDS             282..1610
                     /gene="miaB"
                     /locus_tag="ACFM5C_001632"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFC6069301.1"
                     /translation="MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADII
                     LFNTCSVREKAQEKVFSDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVV
                     FGPQTLHRLPKMIVDKETSGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKY
                     CSFCVVPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDF
                     ATLLRIVHEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSA
                     MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSF
                     VFIYSPRPGTPAANLHDDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGI
                     SKKDPDQLQARTANNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKTVSI"
     gene            complement(1695..3608)
                     /gene="dxs"
                     /locus_tag="ACFM5C_001633"
     CDS             complement(1695..3608)
                     /gene="dxs"
                     /locus_tag="ACFM5C_001633"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFC6069302.1"
                     /translation="MNPSPLLDLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGG
                     HFASNLGAVELTIALHYVYNTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAG
                     FPKRCESEYDAFGVGHSSTSIGAALGMAAADKLLGSDRRSVAIIGDGAMTAGQAFEAL
                     NCAGDMDVDLLVVLNDNEMSISPNVGALPKYLASNVVRDMHGLLSTVKAQTGKVLDKI
                     PGAMEFAQKVEHKIKTLAEEAEHAKQSLSLFENFGFRYTGPVDGHNVENLVDVLKDLR
                     SRKGPQLLHVITKKGNGYKLAENDPVKYHAVANLPKESAAQMPSEKEPKPAAKPTYTQ
                     VFGKWLCDRAAADSRLVAITPAMREGSGLVEFEQRFPDRYFDVGIAEQHAVTFAGGLA
                     CEGMKPVVAIYSTFLQRAYDQLVHDIALQNLPVLFAVDRAGIVGADGPTHAGLYDLSF
                     LRCIPNMIVAAPSDENECRLLLSTCYQADAPAAVRYPRGTGTGAPVSDGMETVEIGKG
                     IIRREGGKTAFIAFGSMVAPALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVT
                     LEENAEQGGAGGAVLEVLAKHGICKPVLLLGVADTVTGHGDPKKLLDDLGLSAEAVER
                     RVRAWLSDRDAAN"
     gene            complement(3693..4610)
                     /gene="xerC"
                     /locus_tag="ACFM5C_001634"
     CDS             complement(3693..4610)
                     /gene="xerC"
                     /locus_tag="ACFM5C_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HFC6069303.1"
                     /translation="MVLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQM
                     PSEDVGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDP
                     TADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIH
                     GLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNG
                     TRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLS
                     TTQIYTKLDFDHIARLYDEAHPRAKRRDE"
     gene            4804..5868
                     /gene="fba"
                     /locus_tag="ACFM5C_001635"
     CDS             4804..5868
                     /gene="fba"
                     /locus_tag="ACFM5C_001635"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219833.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFC6069304.1"
                     /translation="MALVSMRQLLDHAAENSYGLPAFNVNNLEQMRAIMEAADQVGAP
                     VIVQASAGARKYAGAPFLRHLILAAVEEFPHIPVVMHQDHGASPDVCQRSIQLGFSSV
                     MMDGSLMEDGKTPSSYEYNVNATRTVVNFSHACGVSVEGEIGVLGNLETGEAGEEDGV
                     GAVGKLSHDQMLTSVEDAVRFVKDTGVDALAIAVGTSHGAYKFTRPPTGDVLRIDRIK
                     EIHQALPNTHIVMHGSSSVPQEWLKVINEYGGNIGETYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAVRRYLAENPSDFDPRKYLSKTIEAMKQICLDRYLAFGCEGQAGKIKP
                     VSLEKMANRYAKGELNQIVK"
BASE COUNT         1349 a         1819 c         1567 g         1255 t
ORIGIN      
        1 gcaggaactg atgttccctg tcgccaaaat tgctggtaca cgcacacagc agcaatgccg
       61 cccacacagc cggtttcata cacacctccc attaaagcca aacattatac agccgtcctg
      121 accgattaaa ttcatatttt aaaacaatat tctgtttaca aaacccacat cgtgctataa
      181 tccgcaccga ttttcagacg gcatcgtcat gccgtctgaa attttttcat tccaacaaca
      241 atcagccccg cgattacggc tgcctgagaa agacacaaac catgaaaaaa gtatttatcc
      301 gcaccttcgg ctgccagatg aacgaatacg acagcgacaa aatgctcgcc gtcctcgccg
      361 aagaacacgg cggcatcgaa caggttaccc aagccgacga agccgacatc atcttgttca
      421 acacctgctc cgtgcgcgaa aaagcgcaag aaaaagtctt ctccgatttg gggcgcgtgc
      481 gtccgctcaa agaaaaaaac cccggcctca tcatcggcgt tgccggctgc gtcgcctcgc
      541 aagaaggcga aaacatcatc aaacgcgcgc cttatgttga cgtggttttc ggcccgcaaa
      601 cgctgcaccg cctgcccaaa atgattgtgg acaaagaaac cagcgggctg tcgcaagtcg
      661 atatttcctt ccccgaaatc gaaaaattcg accacctgcc gcccgcccgc gtcgaaggcg
      721 gcgcggcatt tgtatcgatt atggaaggct gttccaaata ctgctcattc tgcgtcgtcc
      781 cctacacgcg cggcgaagaa ttctcccgcc cgctcaacga cgtattgaca gaaatcgcca
      841 accttgccca gcaaggcgtt aaagaaatca acctcttagg ccaaaacgtc aatgcctatc
      901 gcggcgaaat ggacgacggc gaaatctgcg acttcgccac cctgctgcgc atcgtccacg
      961 aaatccccgg catcgaacgt atgcgcttca ccaccagcca cccgcgcgag tttaccgact
     1021 cgattatcga gtgctaccgc gacctgccca aattggtttc ccacctgcac ctgccgattc
     1081 aaagcggttc cgaccgcgta ttgagcgcga tgaaacgcgg ctacaccgct ttggaataca
     1141 aatccatcat ccgcaaactg cgtgccatcc gtcctgattt atgcctgagc agcgacttta
     1201 tcgtcggctt ccccggcgag accgaacgcg agttcgagca aaccttgaaa ctggtgaaag
     1261 acattgcctt cgacttgagc ttcgtgttta tttacagtcc gcgccccggc acgcctgccg
     1321 ccaacctgca cgacgacacg ccgcacgaag aaaaagtgcg ccgcctcgaa gccttgaacg
     1381 aagtcatcga agccgaaacc gcgcgcatca accaaacgat gatcggcacg gttcaacgct
     1441 gcctggtcga aggcatctcc aaaaaagacc ccgaccaact gcaagcccgc accgccaaca
     1501 accgcgtcgt caactttacc ggcacgcccg atatgatcaa ccaaatgatc gatttggaaa
     1561 tcaccgaggc ctacaccttc tccctgcgcg gcaaaaccgt cagcatttga tttcccccgc
     1621 cgcaaaaatg ccgtctgaag cgtttcagac ggcattttgc cttgtatcgg cagacgacgg
     1681 cgcggccggg cggcttaatt tgccgcatcc cgatccgaca gccacgcgcg cacacgccgt
     1741 tccaccgctt cggcactcaa gcccaaatcg tctaaaagtt ttttcggatc gccgtgtccg
     1801 gttacggtat cggcaacgcc caaaagcaaa acgggtttgc agatgccgtg tttcgccaat
     1861 acttccagca ccgcgccgcc tgcgccgccc tgttcggcgt tttcttcaag ggtaacgatg
     1921 cggtcgtggc ttcgggcaag gcggacaatc aactcttcgt ctatcggttt gacgaagcgc
     1981 atatcggcga cggtggcgtt cagtttttcg gcaaccgcca atgcgggggc gaccatgctg
     2041 ccaaaggcaa tgaaggcagt tttcccacct tcgcggcgga taatgccctt gccgatttca
     2101 acggtttcca tgccgtctga aaccggcgcg cccgtacccg tgccgcgcgg atagcggacg
     2161 gcggcgggcg cgtctgcctg atagcaggtc gaaagcagca ggcggcattc gttttcatcg
     2221 ctcggcgcgg cgacaatcat attcggaatg cagcgcaaga agctcaaatc gtacaaaccg
     2281 gcgtgggtcg ggccgtccgc gccgacgatg cccgcgcggt cgacggcaaa caaaacgggc
     2341 aggttttgca gggcgatgtc gtgcaccagt tggtcgtagg cgcgttgtaa aaaggtggaa
     2401 taaatcgcca cgacgggctt catcccttcg caagccaaac cgccggcaaa ggtaacggcg
     2461 tgctgctcgg cgatgccgac atcgaaatag cggtcgggga atcgttgttc aaactcaacc
     2521 aagccgctgc cctcgcgcat ggcgggggta atcgcaacca gtcgggaatc tgccgccgcc
     2581 cggtcgcaca gccatttgcc gaacacttgg gtataggtcg gtttggcggc gggcttgggt
     2641 tctttttcag acggcatttg cgccgcgctt tctttaggca ggttggcgac ggcgtggtat
     2701 ttgacgggat cgttttcggc gagtttgtag ccgttgcctt ttttggtaat gacgtgcagc
     2761 aactgagggc ctttgcggct gcgcaagtct ttcaatacgt ccaccagatt ttcgacgttg
     2821 tgtccgtcca cggggccggt gtagcggaag ccgaagtttt caaacaaaga cagcgactgt
     2881 ttggcgtgtt cggcttcttc ggcaagggtt ttgattttgt gttcgacttt ttgggcaaac
     2941 tccatcgcgc cgggtatttt gtctaatacc ttgcccgttt gcgctttgac ggtactcaac
     3001 aggccgtgca tatcgcgcac gacgttgctg gcaaggtatt tcggcagcgc gccgacgttg
     3061 ggggaaatcg acatttcgtt gtcgttgagg acgaccagca aatccacatc catatcgcct
     3121 gcgcaattca aggcttcaaa cgcctgcccc gccgtcatcg cgccgtcgcc gatgatggcg
     3181 acgctgcggc ggtcgctgcc caagagtttg tctgccgccg ccatgcccaa cgccgcgccg
     3241 atggaggtgg aggaatgccc cacgccgaac gcgtcgtact cggactcgca acgtttcgga
     3301 aaacccgcca aaccgccgta ttggcgcatg gtgtgcatct ggtttttgcg tccggtaagg
     3361 attttgtgcg gatagctttg gtgtccgaca tcccacacca gcttgtcttc gggcgtgttg
     3421 tacacatagt gcagggcgat ggtcagctcg accgcaccta agttgctggc gaaatgaccg
     3481 ccggtttgac cgacggattc cagcagaaag gcgcgcaact cgccggcaag gcgcggcagc
     3541 tgttttttgt ccagacggcg caaatcttgc gggctgtcaa tcaggtcgag tagggggctt
     3601 gggttcatgg tgtgtctttt ttatgtgtcg tccgggtgca acggccaatt atatatcaag
     3661 agtgtgcggc tgacggctga ttttgccgta tgtcattcgt cccgccgctt ggcgcgcggg
     3721 tgggcttcgt catacaggcg ggcgatgtgg tcgaaatcga gtttggtgta aatctgcgtg
     3781 gtcgaaaggc tgctgtgtcc gagcagctcc tgcaccgccc ggatgtcgcg cgaagcctgc
     3841 aacaggtgtc cggcatagct gtggcgcatc atatgcggcg aaacgtgtct gccgtctccg
     3901 ttttgcgccg cccattgcgc caaacgtttt tggatttggc gttggctcag gcgcgtgccg
     3961 ttcctgccgg taaacagggc tttgccgtcc gatgccgtct gacgcagcgg cagatagttt
     4021 ttcagggctt ccacgctttt gccggtcagc ggcacctgcc gctgcttgcg ccctttgccg
     4081 gtaacgtgta cccacgcctc gtccaaatag acatcatctg cattcaagcc gtgtatctcg
     4141 ctcacgcgca aaccgctgcc gtacatcagc tcgaacaggg cgtgatcgcg caccgccagc
     4201 gggtcgccgc cgtccacggg caaatccagc atccggttca gccattcctg cggcagggct
     4261 ttgggtacgc gctcgggctg cttcggcggt ttgatgtcgg cggtcgggtc ggtatgcagc
     4321 agaccgcgtt ccaccagcca aacacaatac tgccgccaag acgacagctt gcgcgccagc
     4381 gtccgcgcat tcaaaccgcg ctgcgacagc cgccgcaacg ccgccgtaaa atcgcgccgc
     4441 gacaagtcct gcggcacgcc gcctacatct tcagacggca tttgtgccag cagcgcaaac
     4501 agttcttcca aatcgcgccg gtatgccgcc accgtgtgct ccgacttgcc ctcgcgcacg
     4561 atgttttcca aataagcgtc aaaatgcgcc gcaaacccgt ccaaaaccat aaccgcccta
     4621 cacaaatatc aaaaaaccag tgaaaacatt atcataaacg acacaccaaa accccgaacc
     4681 gcccaaaatc cgacccgtcc gcccgccgtt atcgttaaca taaaatcaat gagccgttta
     4741 tggttttttg ccgcaaaaaa cattataatc cgccttattt acctattgcc caaggagaca
     4801 caaatggcac tcgtatccat gcgccaactg cttgatcatg ctgccgaaaa cagctacggc
     4861 ctgcccgcgt tcaacgtcaa caacctcgaa caaatgcgcg ccattatgga agccgccgac
     4921 caagtcggcg cgcccgtcat cgtacaggcg agtgcaggtg cgcgcaaata tgcgggcgcg
     4981 ccgtttttgc gccacctgat tctggcggca gtcgaagaat ttccgcacat ccccgtcgtg
     5041 atgcaccaag accacggcgc atcgcccgac gtgtgccaac gctccatcca actgggcttt
     5101 tcctccgtga tgatggacgg ttcgctgatg gaagacggca aaaccccttc ttcttatgaa
     5161 tacaacgtca acgccacccg taccgtggtt aatttctccc acgcttgcgg cgtatccgtc
     5221 gaaggcgaaa tcggcgtgtt gggcaacctc gaaactggcg aagccggcga agaagacggt
     5281 gtaggcgcag tgggcaaact ttcccacgac caaatgctca ccagcgtcga agatgccgtg
     5341 cgtttcgtta aagataccgg cgttgacgca ttggcgattg ccgtcggcac cagccacggc
     5401 gcgtacaaat tcacccgtcc gcccacaggc gacgtgttgc gtatcgaccg catcaaagaa
     5461 atccaccaag ccctgcccaa tacacacatc gtgatgcacg gttccagctc cgttccgcaa
     5521 gaatggctga aagtcatcaa cgaatacggc ggcaatatcg gcgaaaccta cggcgtgccg
     5581 gttgaagaaa tcgtcgaagg catcaaacac ggcgtgcgca aagtcaacat cgataccgac
     5641 ttgcgccttg cttccaccgg cgcggtacgc cgctaccttg ccgaaaaccc gtccgacttc
     5701 gatccgcgca aatatttgag caaaaccatt gaagcgatga agcaaatctg cctcgaccgc
     5761 tacctcgcgt tcggttgcga aggtcaggca ggcaaaatca aaccggtttc cttggaaaaa
     5821 atggcaaacc gttatgccaa gggcgaattg aaccaaatcg tcaaataaca ggttgcttgt
     5881 aaacaaaatg ccgtctgaac cgttgttcgg acggcatttg atttttgctt ctttgacctg
     5941 cctcattgat gcagtatgca aaaaaagata ccataaccaa aatgtttata
//
LOCUS       DAXHNP010000122         5963 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.122, whole genome shotgun sequence.
ACCESSION   DAXHNP010000122 DAXHNP010000000
VERSION     DAXHNP010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5963
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.122"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(41..964)
                     /gene="truB"
                     /locus_tag="ACFM5C_001636"
     CDS             complement(41..964)
                     /gene="truB"
                     /locus_tag="ACFM5C_001636"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFC6069305.1"
                     /translation="MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHT
                     GVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARAD
                     ISLAEFQTACQALTGNIRQVPPMFSALKHEGKPLYEYARKGIVIERKARDITVYAIDI
                     AEFDAPKAVIDVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEA
                     LANLNETERDSLLLPCDVLVSHFPQTVLNDYAVHMLHCGQRPRFEEDLPSDTPVRVYT
                     ENGRFVGLAEYQKEICRLKALRLMNTAASAA"
     gene            complement(997..1368)
                     /gene="rbfA"
                     /locus_tag="ACFM5C_001637"
     CDS             complement(997..1368)
                     /gene="rbfA"
                     /locus_tag="ACFM5C_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFC6069306.1"
                     /translation="MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVE
                     VTRDYSHATVFYTILNQDAREITEEVLEHARGHLRSELAKRIKLFKTPELHFKYDESL
                     ERGLNLSALIDQVAAEKPVED"
     gene            1559..2803
                     /gene="clpX"
                     /locus_tag="ACFM5C_001638"
     CDS             1559..2803
                     /gene="clpX"
                     /locus_tag="ACFM5C_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFC6069307.1"
                     /translation="MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHED
                     GNDGTPSESAGGEPEESGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHP
                     KAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
                     IITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSK
                     DENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVK
                     QYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLKGL
                     KKVVVGKAVIEEGREPELVFES"
     gene            complement(2906..4102)
                     /locus_tag="ACFM5C_001639"
     CDS             complement(2906..4102)
                     /locus_tag="ACFM5C_001639"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFC6069308.1"
                     /translation="MQNYLTPNFAFAPMIPERASGSRVWDTEGREYIDFSGGIAVNAL
                     GHCHPALADALNAQMHKLWHISNIYTTRPAQELAQKLVANSFADKVFFCNSGAEANEA
                     ALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVP
                     FNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCDRHNALLILDEVQT
                     GMGHTGRLFAYEHYGVVPDILSSAKALGCGFPIGAMLATEKIAAAFQPGTHGSTFGGN
                     PMACAVGSRAFDIINTPETLNHVREQGQKLQTALLDLCRKTGLFSQVRGMGLLLGCVL
                     DEAYRGRASEITAAALKHGVMILVAGADVLRFAPSLLLNDEDMAEGLRRLEHALTEFA
                     ATSDNP"
     gene            4506..5006
                     /locus_tag="ACFM5C_001640"
     CDS             4506..5006
                     /locus_tag="ACFM5C_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069309.1"
                     /translation="MNAMPQTAAQNETLHTCSIIVDDAQDFSPMLLDAGRDDTLISES
                     MIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKT
                     ANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRK
                     LHTLPL"
     gene            5091..5645
                     /locus_tag="ACFM5C_001641"
     CDS             5091..5645
                     /locus_tag="ACFM5C_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069310.1"
                     /translation="MKKIIASALIATFALAACQDDTQARLEQQQKQIEALQQQLAQQA
                     DDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAG
                     AFIGNALANKFTRAGNQDSPVARRARAAYHQSARPNARTSRDLNTRSLRAKQQAAQAQ
                     RYRPTTRPPANYRRPAMRGFGRRR"
BASE COUNT         1419 a         1588 c         1609 g         1347 t
ORIGIN      
        1 aacacattat tcaaacacag cctgtatttt taaccgccgt tcaggcggcg gatgccgccg
       61 tgttcatcag gcgcaaggct ttcagacggc atatttcttt ttgatattcc gccagaccga
      121 caaagcggcc gttttccgtg taaacgcgta ccggcgtgtc ggaaggcagg tcttcttcga
      181 aacgcggacg ttgtccgcag tggagcatat ggacggcata atcgtttaaa acggtttggg
      241 gaaagtgtga aaccaatacg tcgcagggta gcagcaagct gtcgcgttct gtttcgttca
      301 aatttgccaa ggcctcaagc gtgtggcttt gggcgatggt aaagccggcg gtttcagtgc
      361 ggcgcagggc ggtcaggtgg gcgaacgtgc cgatgtgttt ggcgatgtct tcgctgaggg
      421 tgcggatgta ggtgcctttg ctgcaacgta cgtcgatgac ggctttgggc gcgtcaaatt
      481 cggcaatatc gatggcgtaa acggtaatgt cgcgcgcttt gcgttcgatg acgatgcctt
      541 tgcgggcgta ttcgtacagc ggtttgcctt cgtgcttgag cgcggaaaac attggcggca
      601 cttggcggat gttgcctgtc agtgcttggc aggccgtctg aaattcggct aaggaaatat
      661 cggcgcgggc ggtggcaatg atttcgcctt cggcatcacc cgtgctgctg gcttcgccga
      721 gtttcagcgt ggcggtgtag gctttgtcgg catccagcag gtattgggcg aacttggtcg
      781 cttcaccgaa gcagacgggc aaaagtccgg ttgccaaagg gtcgagcacg ccggtatgtc
      841 cggctttttc ggcatgaaac aaacgccgcg ctttttgcag cgcggtgttg ctggaaaggc
      901 cttcgggttt gtccaagagc aaaacaccgt tgacggcacg tttttggggt ttgcctgtat
      961 tcatggttcg atgttcggac ggcatgggca tatccgtcag tcttcaaccg gtttttccgc
     1021 cgccacttga tcgataaggg cggacaggtt caaaccgcgt tccaaagatt cgtcgtattt
     1081 gaaatgcagt tcgggcgttt tgaacagctt gatgcgtttg gccaattcgc tgcggaggtg
     1141 tccgcgcgcg tgttccagca cttcttccgt aatttcgcgc gcgtcttggt ttaaaatggt
     1201 gtagaacacg gtggcgtggc tgtaatcgcg ggtaacttcg acttcgttga cggtaatgaa
     1261 gccggcgcgc gggtctttca gtccggtacg gacgagttcg gcaagctcgc gcataatttg
     1321 ttctttgaca cggtcttggc gggcgtagcc gcgttggggt tttctcatga atatcctcag
     1381 atttcagatt tggtttcaga cggcattttt gccgccgggg cggttgcgaa agggcgtatt
     1441 atagcctaat cggcgggatt ttaaggtaat acattgataa gaacggatat agttattata
     1501 cttggcaacc cgaacggcac gtgccgtttt ctgtaacgca tacattgtaa agaaagccat
     1561 gtccaacgaa aaccgtactt gttccttttg cggaaaatcc aaatcacacg tcaaacattt
     1621 aattgagggc gaaaacgcct ttatctgtga cgaatgcgtc tcaaactgta ttgaaatatt
     1681 gcatgaagac ggaaatgacg gcacgccttc ggaaagtgcc ggaggggagc cggaagaatc
     1741 cggcaagctg cccacgcccg ccgaaatcgt cgccaacctc aacgaccacg ttatcggtca
     1801 ggaacaagcc aagaaagcct tggcggtgtc ggtgtacaac cattacaaac gcctgcgcca
     1861 tcctaaagca ggagctaatg tcgaattgtc gaaatccaac atcctgctta tcggcccgac
     1921 cggatcgggt aaaaccctgc tggcgcaatc tttggcgcgc aaactggatg tgccgttcgt
     1981 gatggcggat gccacaactt tgactgaagc aggttatgtc ggcgaagacg tcgagcaaat
     2041 cattaccaag cttttgggca aatgtgattt cgatgtcgaa aaagcccagc gcggcattgt
     2101 ctatatcgac gaaatcgata aaatttcacg caaaagcgac aacccgtcga ttacccgcga
     2161 cgtatccggc gaaggtgtgc aacaagcctt gttgaaactg attgaaggta cagtggccag
     2221 cgttccgccc caaggcggcc gcaagcatcc gaatcaggaa tttatcaacg tcgataccac
     2281 caacatcctg tttatctgcg gcggcgcgtt tgcaggcttg gaaaaagtca tccgccagcg
     2341 tactgaaaaa ggcggtatcg gtttcggtgc gtccgttcac agcaaggacg aaaatgccga
     2401 cattaccaag ctgttcggca tcgtcgaacc ggaagacttg attaaattcg gtctgattcc
     2461 agaattaatc ggacgtttgc ctgtgattgc aactttagaa gaattggacg aagacgcgct
     2521 gattaatatt ttgaccgagc cgaaaaatgc tttggtcaag cagtatcagg cgttgttcgg
     2581 tatggaaaat gtcgaactgg agtttgaaga aggcgcattg cgttccatcg cgcgtcaggc
     2641 aatggaacgc aaaaccggcg cgcgcggcct gaggtccatc gtcgaacgct gcctgctcga
     2701 tacgatgtac cgcctgcctg atttgaaagg cttgaaaaaa gtggtggtcg gtaaggcagt
     2761 catcgaagag ggcagggaac cggaattggt gttcgagtcc tgatggcaaa caaaaccgct
     2821 tcggaacgtt gaaccacgtt tctgaagcgg ttttttgttt ctgatgccgt ctgaagcctt
     2881 cccgccttca gacggcattt gagttttacg gattgtctga tgtcgcggca aattccgtca
     2941 gcgcgtgttc caaacgtcgc aaaccttccg ccatatcctc atcgttcaac agtagcgaag
     3001 gcgcgaaacg caatacgtcc gcacccgcaa ccaaaatcat cacgccgtgt ttcaaggcgg
     3061 cggcggtgat ttcggatgcg cgtccgcgat aggcttcgtc caacacgcag ccgagtagca
     3121 gccccatccc gcgaacttgt gagaacaagc ccgttttcct gcacaaatcc agcaatgccg
     3181 tctgaagttt ctgcccctgt tcacggacat ggtttaaagt ttcgggcgta ttgatgatgt
     3241 cgaatgcgcg gctgccgacc gcacacgcca tcgggttgcc gccgaaagtc gagccgtgcg
     3301 tgcccggttg gaaggcggcg gcaatctttt ctgtcgccag catcgcgccg atcggaaagc
     3361 cgcagcccaa ggcttttgcc gaactcaaaa tatcgggaac aacgccgtaa tgttcatagg
     3421 caaacagcct gcccgtatgc cccatcccgg tttgaacttc gtccaaaatc aacaacgcat
     3481 tgtgccggtc gcacagacgg cgcgcggttt gcaaatattc cgcagtggcg ggcaggatgc
     3541 cgctttcgcc ctgtatcggc tcgatgatga ccgcgcaggt ctgttcgccg acggcagctt
     3601 ccagcgcggc aatatcgttg aacggaacgt gcgtaatgcc ttgcggcagc ggtgcataat
     3661 ccttgctgta tttcggctga ccgccgacgg acacggtaaa cagcgtgcgt ccgtggaaac
     3721 tgttgataca ggcgacgatt tcgctttttc ctccgccgaa acggtcgcgc gcatatttcc
     3781 ttgccagctt caacgccgcc tcattcgctt ccgcgcccga gttgcagaaa aaaaccttgt
     3841 cggcaaaact gtttgcaacc aatttttgcg ccaattcctg cgccggacgc gtcgtataga
     3901 tattggaaat gtgccacagc ttgtgcatct gcgcgtttaa agcatcggca agggcagggt
     3961 ggcagtgtcc cagcgcattg acggcgatac cgcctgaaaa atcaatatat tcacgccctt
     4021 ccgtatccca aacgcggctg cctgaagcgc gttcgggaat catcggggca aaggcgaaat
     4081 tgggggtcag atagttttgc ataattgctc ctgattgcgg ttttgctcgg gattatgcac
     4141 cgtttttcaa agcagataaa gggaaattgc cgacaatatc gggcagcggt aaaaataaac
     4201 cgaaatattt tcaatcggat agatgaaaaa tcaaaaaaat ttcgataaaa tgcttgaggc
     4261 gcggcagcgt tttgatttag aatctcccca atatttttat cttcagacgg catttcatca
     4321 tgcaaggcaa aaaatttaca accgcttatt gctattggta ccacacagac gtgcggtact
     4381 tttttgcgct tgcttgaaat ccatcccata cgcaaaacag gccgctcgaa aatggggcgg
     4441 cttttttgtt accttcacac aggtcgcccg attcggcaac acacgacaga atcaggaaaa
     4501 tgaccatgaa tgcaatgccc caaaccgccg cacaaaacga aaccctgcac acttgtagca
     4561 ttattgtcga tgatgcgcag gatttttccc ccatgcttct cgatgcaggg cgggacgaca
     4621 cacttatcag cgaatcgatg attccgcaaa tccgcaccgt tgccgccctg atagccgccg
     4681 aacggcacga cttcagccgc agcagccccg ccgagtttac cgatgccgcc gatttttttg
     4741 ccgcacggat tctcgtattg ggcgtgcgac gcttccatct ggacgtatcg ctgcttcaga
     4801 ttttgaaaac cgccaacagc cgcgcccgcc gctttgccga aaaacaccgc ctgtttttca
     4861 cacccgcaca agccgaattg agcctgaaca aacacaaaaa ccgccgcctg ctgaccgtag
     4921 aaaccgaaca cgaagtcgaa aacaaaggca acccagtcgc caacagcctc gcatttgtcc
     4981 gcaaactgca caccctgccc ctgtaaacat cacgatttgt cggcagaatg cttgccaaaa
     5041 ttcccgacgg cgatacaata aaaccgattt tccacccaaa caggacacac atgaaaaaaa
     5101 tcatcgcctc cgcgcttatc gcaacattcg cactcgccgc ctgccaagac gacacgcagg
     5161 cacggctcga acagcagcag aaacagattg aagccctgca acagcagctc gcacagcagg
     5221 cagacgatac ggtttaccaa ctgactcccg aagcagtcaa agacaccatt cctgccgaag
     5281 cacaggcaaa cggcaacaac gggcaacccg ttaccggtaa agacgggcag cagtatattt
     5341 acgaccaatc gacaggaagc tggctgctgc aaagcctggt cggcgcggcg gcaggcgcgt
     5401 ttatcggcaa cgcgctggca aacaaattca cacgggcagg caaccaagac agtcccgtcg
     5461 cccggcgcgc gcgtgcagcc taccatcagt ccgcacgccc caatgcgcgc accagcaggg
     5521 atttgaacac gcgcagcctc cgcgcaaaac aacaggcggc gcaggcgcag cgttaccgcc
     5581 cgacaacgcg cccgcccgcc aattaccgcc gaccggctat gcgcggtttc ggcaggaggc
     5641 ggtaaacccg gcgcgccaat gccgtctgaa gggctttcag acggcatttt gtttccaaga
     5701 gtttgatgtc gggatggcaa ttctgattta cgtgcgttgg cagggcggca ttgtcatgcc
     5761 gccgttgggt tttcagacgg catcatatcg aaccgtcagg tcgtggggtg agcattcttg
     5821 cccaccgttg taagggcggg attttttggt gaacaggaat gcccaccctg catctgaaac
     5881 ccttctgcgt cattcccacg caggaaggaa tttagatatt tgaatttaca gaaattttca
     5941 atcgttgcca aagcggaaaa ggg
//
LOCUS       DAXHNP010000123         5880 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.123, whole genome shotgun sequence.
ACCESSION   DAXHNP010000123 DAXHNP010000000
VERSION     DAXHNP010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5880
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.123"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(147..1190)
                     /gene="argC"
                     /locus_tag="ACFM5C_001642"
     CDS             complement(147..1190)
                     /gene="argC"
                     /locus_tag="ACFM5C_001642"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFC6069311.1"
                     /translation="MSKKIKVGIVGATGYTGVELLRLLAAHPDVEVAAVTSRSEAGTA
                     VADYFPSLRGVYGLAFQTPDEAGLEQCDIVFFATPNGIAMKDAPRLIEQGVRVIDLSA
                     DFRIRDIPTWEHWYGMTHAAPDLVSQAVYGLSELNREAVAQARLVANPGCYPTCVSLP
                     LVPLLRQCRLKPGMPLIADCKSGVSGAGRKGNVGSLLCEVGDNFKAYGIAGHRHLPEI
                     RQTIAGLQDGIAEGFVFTPHLAPMIRGMHATVYLHLSDGICPETILRDYYRDSLFVDI
                     LPAGSTPETRSVRGANLCRISIQQAAQSDVWVVLSVIDNLVKGAAGQAVQNMNIMFGL
                     KETHGLDAIPLLP"
     gene            complement(1187..1468)
                     /locus_tag="ACFM5C_001643"
     CDS             complement(1187..1468)
                     /locus_tag="ACFM5C_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069312.1"
                     /translation="MKTLVLLLLSFSTTTAFAAYGLGLGQAPKYPADFRAYGYVYSGR
                     QGWVLKTEADAIKLDTLFKRFVYRPSTANQNPVGQRSDGIPANHTKEKP"
     gene            1836..2990
                     /locus_tag="ACFM5C_001644"
     CDS             1836..2990
                     /locus_tag="ACFM5C_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFC6069313.1"
                     /translation="MSIHLDFGISPKTFRQTYLYQKPKLFKGAARNLEAASWKDINEI
                     YQRADPTAPLFYLRKKGAIVPKEEYVESFDALGKTRYRFIKSVIYEHMKNGASLVYNH
                     INNEPFSDHISRQVARFAGAHTIVSGYLAFGSDESYKNHWDTRDVYAIQLFGKKRWQL
                     TAPDFPMPLYMQQTKDTDISIPEHIDMDIILEAGDVLYIPRGWWHRPIPLGCETFHLA
                     VGTFPPNGYNYLEWLMKKFPTIESLRHSFSDWEQDRTRINDTAAQIAAMIADPVNYEA
                     FSEDFLGKERTDTAFHLEQFANPNATPLSDDVRLRLNANNLDTLEKGYLIGNGMKISV
                     DELGKKVLEHIGKNEPLLLKNLLVNFNQGKHEEVRKLIYQLIELDFLELL"
     gene            2999..3205
                     /locus_tag="ACFM5C_001645"
     CDS             2999..3205
                     /locus_tag="ACFM5C_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069314.1"
                     /translation="MKNWKQFTFFVILVIACYQVLYFLSDMFLLDYINKYSWNLNFIQ
                     GTLNFFSIYLPYVFVSRIFRNTNQ"
     gene            3410..3670
                     /locus_tag="ACFM5C_001646"
     CDS             3410..3670
                     /locus_tag="ACFM5C_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HFC6069315.1"
                     /translation="MERKNNIIELSIENLELIYGGGLGERILEGGANGAQIGGSIGAG
                     IGLGVGIVSGGIPAGPAIILGGTVGAAVGAVTGMGVAAYEYY"
     gene            3830..4456
                     /locus_tag="ACFM5C_001647"
     CDS             3830..4456
                     /locus_tag="ACFM5C_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein"
                     /protein_id="HFC6069316.1"
                     /translation="MNRPKQPFFRPEVTVARQTSLTGKVILTRPLSFSLWTTFASISA
                     LLIILFLIFGNYTRKTTVEGQILPASGVIRVYAPDTGTITTKFVEDGEKVKAGDKLFA
                     LSTSRFGAGGSVQQQLKTEAVLKKTLAEQELGCLKLIHENETRSLKATVERLENQKLH
                     ILQQIDGQKRRIRLAEDQWQKRHWADRNCRDWAWYPPIWRRAANLFIL"
     gene            4360..4608
                     /locus_tag="ACFM5C_001648"
                     /pseudo
     CDS             4360..4608
                     /locus_tag="ACFM5C_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237325.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFP transporter"
     gene            4921..5223
                     /locus_tag="ACFM5C_001649"
     CDS             4921..5223
                     /locus_tag="ACFM5C_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069317.1"
                     /translation="MTWVGGSGNAQQSSYYCEICESAGLNDTGNPDKSLGLPNNTFSN
                     PPGWGATIGALAGSRIGMPEFGTFASHAIENFDWSWYRRYREIAETIEREYSGGLP"
     gene            5507..5659
                     /locus_tag="ACFM5C_001650"
                     /pseudo
     CDS             5507..5659
                     /locus_tag="ACFM5C_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117473.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
BASE COUNT         1584 a         1258 c         1431 g         1607 t
ORIGIN      
        1 attcccgctt ttgcgggaat gacgggattt tagatttttg ttttcgcgga ataatgagcc
       61 aaaagccgtc tgaacctaaa aaaccgccac tttcagatgg catcaaaaaa ccgcaggcac
      121 gatacctgcg gtttgccgtt tgcgtttcag gggagcaggg ggattgcgtc caagccgtgt
      181 gtttccttca gtccgaacat gatgttcata ttttgcaccg cctgacccgc cgcgcctttg
      241 acgaggttgt cgatgacgga aaggacgacc cacacatcgg attgcgccgc ctgttggatg
      301 ctgatgcggc agaggtttgc gccgcgcacg ctgcgggttt cgggtgtcga accggcgggc
      361 aggatgtcca cgaacaggct gtcgcggtaa tagtcgcgca ggatggtttc ggggcagatg
      421 ccgtctgaaa ggtggaggta aacggtggcg tgcataccgc gtatcatcgg cgcgaggtgc
      481 ggcgtgaaca cgaatccttc ggcgatgccg tcctgaagcc cggcgatggt ctgcctgatt
      541 tcgggcaggt ggcggtgtcc agctatgccg taggctttga agttgtcgcc gacttcgcac
      601 aacagcgaac cgacattgcc tttcctgccc gcgccggaca cgccggattt gcagtcggca
      661 atcagcggca taccgggctt cagacggcat tgccgcaaca gcggcacgag cggcagggat
      721 acgcaggtcg ggtagcagcc ggggttggcg acgaggcgtg cctgtgcgac ggcttcgcgg
      781 ttgagttcgc tcaatccgta cacggcttgg gaaacgaggt cgggggcggc gtgggtcatg
      841 ccgtaccagt gttcccaggt cggaatgtcc cgtatgcgga agtcggcgga aaggtcgatg
      901 acgcgcacgc cctgttcaat caggcgcggc gcgtctttca tggcgatgcc gttgggcgtg
      961 gcgaagaaga cgatgtcgca ttgttccaaa cctgcctcgt cgggcgtttg gaaggcgagg
     1021 ccgtacacgc cgcgcaaact cggaaagtaa tcggcaactg cagttcccgc ttcgctgcgg
     1081 ctggttacgg cggcgacttc gacatcggga tgggcggcaa gcaggcgcag cagttccacg
     1141 cccgtgtagc ccgtcgcgcc gacaatgccg actttgattt ttttactcat ggtttttcct
     1201 ttgtgtggtt ggcgggtatg ccgtccgaac gctgtccgac ggggttttga ttggcggtgg
     1261 aaggacggta cacaaagcgt ttgaaaagcg tgtctaattt aatggcatcc gcctctgttt
     1321 ttaaaaccca gccctgccgt ccggaataaa cataaccgta ggcgcgaaag tcggcaggat
     1381 atttcggtgc ctgccccaaa cccaaaccgt atgcggcgaa agcggtggtc gtggagaagg
     1441 aaagcaggag gaggacgagg gttttcataa ggttccaaac cggacggggc gatgaagccc
     1501 gattatagca aaaggtcgtc tgaaaaccgt tttcagacga ccttttattt aattacaata
     1561 aaaatgttaa caacaaaaaa caaaccgctt tttttcgttt ggaaacaaaa caaattttta
     1621 tagtggatta aatttaaacc agtacagcgt tgcctcgcct tgccttgccg tactatctgt
     1681 actgtctgcg gtttcgtcgc cttttcctga tttttgttaa tccactataa ctaaaattgt
     1741 caacaattcc ttgacgcaca cacaaaaaaa actttaatat ttgtaaatat atgtaacatt
     1801 ataaatttta aatattttct gagtaagggg aagtaatgag catccatctc gacttcggca
     1861 ttagtcctaa aacgttccga cagacttatc tgtatcaaaa gcccaagctc tttaaaggag
     1921 cggctcggaa tctcgaagcc gcatcttgga aagatatcaa cgagatatac caacgagcag
     1981 acccaaccgc accgctgttt tatctgcgta aaaaaggtgc aattgttcct aaagaagaat
     2041 acgtcgaaag tttcgacgct ttgggcaaaa ctcgctaccg ttttattaaa tccgttatct
     2101 acgaacatat gaagaatggt gcgtcgttag tctataacca tattaacaac gagccgtttt
     2161 cagatcatat ttcccgtcaa gtcgcccgct ttgctggcgc acatactatt gtcagtggat
     2221 atcttgcttt tggcagcgac gaatcttata aaaaccattg ggacacccgc gatgtgtatg
     2281 ccatccagct tttcggcaag aaacgttggc aacttactgc ccctgatttc cctatgccat
     2341 tgtatatgca acagactaaa gatactgata tttccattcc tgaacatatc gatatggata
     2401 ttatccttga agcaggtgat gtcctctaca tcccgcgcgg ttggtggcac agacctatcc
     2461 cgctcggctg tgaaaccttc cacctcgctg tcggtacctt tccgcccaac ggctataatt
     2521 acctcgagtg gctaatgaag aaattcccca cgatagaaag tctgcgccac agtttctcag
     2581 actgggagca agataggacg cgtatcaacg atactgccgc acaaattgct gccatgattg
     2641 ccgaccccgt caattacgaa gccttcagtg aagacttcct cggcaaagaa cgcaccgata
     2701 ccgcttttca tctcgaacag ttcgcgaatc ccaacgctac tccgctttca gacgacgtca
     2761 ggttgagact aaatgccaat aatttggata cgttggaaaa ggggtatttg attgggaatg
     2821 ggatgaagat aagcgtagat gaattgggga aaaaagtttt agaacacatc ggtaagaatg
     2881 aaccgttatt gttgaaaaat ctactggtta acttcaatca gggaaaacat gaagaagtta
     2941 ggaagttgat ttatcagttg atagagttag attttctgga acttttgtga gggattctat
     3001 gaaaaactgg aagcaattta catttttcgt aatattagta atagcttgtt atcaagtgct
     3061 atatttttta tcagatatgt ttcttctcga ctacattaac aaatatagtt ggaatttgaa
     3121 ttttattcag ggtactttga attttttttc aatatatctg ccatatgttt ttgttagccg
     3181 aatttttagg aatactaacc aatgaaagac taggctatga aatcaaaatt tatgtataag
     3241 ttactggtac ttgcaaagta cctgtatatt ttaatttgta tatcaatacc aatcgttttt
     3301 atttatgaaa gctaccaagg agatgatgtt gattttatga tttatattca tgcttttatt
     3361 attttttcca tattgggtgt attgactcaa tattctacgt ctaatttttt tggaaaggaa
     3421 aaataacatc attgaactat ccattgagaa tctggagcta atttatggcg gaggcttagg
     3481 ggagagaatc cttgaaggag gagcaaatgg tgcacaaata ggaggatcaa ttggtgcagg
     3541 tattggtctg ggtgtcggta tagtttctgg tggtattcct gccggaccgg ctattattct
     3601 cggtggcaca gttggtgctg ctgttggtgc tgtaactggt atgggtgttg cagcatatga
     3661 gtattactaa gaaactcagc ccaaagggac agtaacggtc ggtccgattt ctgcttttgc
     3721 tgtggacaaa tcaggaaacg gctacactga cggtacagat tactgctgat atttctcatc
     3781 tttcagacga tctctagggg tcgtctgaaa ctttcttaac ttcaatttta tgaatagacc
     3841 caagcaacct ttcttccgcc ctgaagtcac agttgcccgg caaaccagcc tgacgggtaa
     3901 agtgattctg acacgaccgt tgtcattttc cctatggacg acatttgcat cgatatctgc
     3961 gttactgatt atcctgtttt tgatatttgg taactatacg cgaaagacaa cagtggaggg
     4021 acaaatttta cctgcatcgg gcgtaatcag ggtgtatgca ccggatacgg ggacaattac
     4081 aacgaaattc gtggaagatg gagaaaaggt caaggctggc gacaagctat ttgcgctttc
     4141 gacctcacgt ttcggcgcag gaggtagcgt gcagcagcag ttgaaaacgg aggcagtttt
     4201 gaagaaaacg ttggcagaac aggaactggg ttgtctgaag ctgatacacg agaatgaaac
     4261 gcgcagcctt aaagcaactg tcgaacgttt ggaaaaccag aaactccata ttttgcaaca
     4321 gatagacggt cagaaaaggc gcattagact tgcggaagat cagtggcaaa aacggcactg
     4381 ggcagacagg aattgtcggg attgggcatg gtatcctccg atttggcgaa gagcagcgaa
     4441 cctgtttatc ttgtgaaaat aaaacccgac aaatcaacca tcactgcata cggtgaggaa
     4501 aaaccgctgc aaatcggcat gacgttggaa gcagacatcc tgcacgagaa acggcgattg
     4561 tacgaatggg tattggagct gatttatagt atatcgggca aactgtaaga cttgaggctg
     4621 aaagataaag aagttgtctg aaaccttttc agacgaccag aagacaatat ataaaaacac
     4681 aaacttcaaa actgcctgaa accatcctct tttacaggca ctccgtctgt aaaagcaagg
     4741 atagggcatc tgcccttttg attgtttgat taacgataca aggagtttca aaatgagagt
     4801 tttatagtgg attaacaaaa accagtacag cgttgcctcg ccttgccgta ccatttgtac
     4861 tgtctgcggc ttcgtcgcct tgtcctgatt taaatttaat ccactatatg tgttcatgaa
     4921 atgacttggg tcggaggctc aggtaatgcg caacaaagtt catattattg cgaaatttgc
     4981 gaatctgcag ggcttaacga tacgggaaat cctgataaat ctttaggatt gccaaacaat
     5041 acgttcagta atccgcctgg ttggggagct acaatcggag ctttagcagg tagccgcata
     5101 gggatgcctg aatttggtac gtttgcgagc catgccattg aaaatttcga ctggtcatgg
     5161 tatcgacgtt atagggaaat tgccgaaacg attgaacgag aatattcagg cggtttgcct
     5221 taatagttga ggaggtcatg atgtttgcca aacattatca attcatcgca ctcggcatca
     5281 tgctgcttct ttatatgttg attctctata cgaccgattt ttccaatctg acgtattgga
     5341 tgctgttttt tatctgtttt attacaggaa aaatattagc tcgtttgtta gagaaaagct
     5401 ttaaataaaa tagcagctag tcgcaaaagg tcgtctgaaa ccttttcagg cggcctttct
     5461 aaaatacatc caacttccta atccctattt ttcaaaaagg aaatctatgc cccatctgca
     5521 aaacctgtct ttgggcttaa agaaaaagct gcctgttatc ctgcaaacag aaatatcaga
     5581 atgcggcttg gcatgtctgg cggctgtggc gggatttcat ggtttccata cgaatttacg
     5641 cgcactgcgt tcaaaatact gtccgagacc tttgcaaaat tccccaaaat cccctaaatg
     5701 tcttggtggg aattttgggg aattttgcaa aggtctcatt ctataactgt aaatactttt
     5761 aaatttatga caaaatagta aatattgcta aaataatatt gatgtcatga aattttttcc
     5821 tgctccatgt ctgttggtta tcctggctgt catacccctt aaaaccttag ctgccgatga
//
LOCUS       DAXHNP010000124         5878 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.124, whole genome shotgun sequence.
ACCESSION   DAXHNP010000124 DAXHNP010000000
VERSION     DAXHNP010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5878
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.124"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            20..403
                     /locus_tag="ACFM5C_001651"
     CDS             20..403
                     /locus_tag="ACFM5C_001651"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFC6069318.1"
                     /translation="MEPSSYAAEKKGKGGIRRVINAFGYSIDGIAAAYRYEAAFRQVL
                     WLNVLLVCAAFFWVSETAVRLPLIIASFVSVIVELFNTAVEAAVDHTSTEKHELAKRA
                     KDAGSAAQLFAMLMLAAVWLSALFG"
     gene            517..990
                     /locus_tag="ACFM5C_001652"
     CDS             517..990
                     /locus_tag="ACFM5C_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFC6069319.1"
                     /translation="MKKLLAAVMMAGLAGAVSAAGVHVEDGWARTTVEGMKIGGAFMK
                     IHNDEAKQDFLLGGSSPVADRVEVHTHINDNGVMRMREVEGGVPLEAKSVTELKPGSY
                     HVMFMGLKKQLKEGDKIPVTLKFKNAKAQTVQLEVKTAPMPAMNHGHHHGEAHQH"
     gene            1116..2219
                     /gene="mnmA"
                     /locus_tag="ACFM5C_001653"
     CDS             1116..2219
                     /gene="mnmA"
                     /locus_tag="ACFM5C_001653"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFC6069320.1"
                     /translation="MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWED
                     DDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDV
                     LCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLK
                     PFQLERAIFPLGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTD
                     NGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDH
                     PLLYTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELVFDEPQW
                     AVTPGQSAVLYEGDVCLGGGIIQSTDKPVIITR"
     gene            2290..3960
                     /locus_tag="ACFM5C_001654"
     CDS             2290..3960
                     /locus_tag="ACFM5C_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFC6069321.1"
                     /translation="MKKIWLDSYEKGVSAEIDITQYNSVSDVFRQSVEKFADQPAFQN
                     MGKTLTYAETGKLATDFASYLQNVLKLPRGERVAIMLPNVLQYPVALFGILQAGLVAV
                     NTNPLYTPRELEHQLKDSGATAIIVLENFANTLELVLPRTQIKHVIVASVGEMFGLLK
                     GSLINFIIRKIKKMVPEYRIRETISFQTALKEGAKHVFQPVALNREDTALLQYTGGTT
                     GVAKGAVLSHGNICANMLQAKEWIKNQLREGKETVIAALPLYHIFALTVNLMIFANAG
                     SKIILITNPRDMKGFIGELKKQRVNVFIGVNTLFNAMVNRPDFAEVDFSGLRLTLGGG
                     MATQKAVAEKWKKITGTPIVEAYGLTEASPGVCCNPLNIESYSGSIGLPVSSTEVELR
                     DANGKEVPVGQPGELWVKGPQVMQGYWNRPEETAKAIDARGFLETGDIAVMDEKGWLK
                     LVDRKKDLVVVSGFNVYPNEIEEVIAHHGKVMEVACIGVPDEKTGEALKVFVVKKDPS
                     LTKEELIAFCRTELTAYKVPKNIEFRDELPKSNVGKILRRELRQSTGK"
     gene            4072..5706
                     /locus_tag="ACFM5C_001655"
     CDS             4072..5706
                     /locus_tag="ACFM5C_001655"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFC6069322.1"
                     /translation="MTKFIFVTGGVVSSLGKGIAAASIAAILESRGLNVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDSTMTRRNSFSTGQVYENVIAKE
                     RRGDYLGGTVQVIPHITDEIKRRIHEGAAGYDVAIVEIGGTVGDIESLPFLEAIRQMR
                     SQLGRNNTLFAHLSYVPYIAAAGEIKTKPTQHTVKEMLSIGLQPDILICRMDRTMPAD
                     ERRKIALFCNVEERAIVGSYDVDSIYECPEMLHDQGIDNIITEQLQLNVQQADLTAWK
                     KIVHAIQNPKHTVKIAMVGKYVDLTESYKSLIEALKHAGIHTETDVQITFVDSESIEK
                     NNGDVSMLKDMDAILVPGGFGSRGVEGKIAAVRYARENNVPYLGICLGMQIALIEYAR
                     DVAGLKGANSTEFDLKCAAPVVALIDEWQTADGSVETRDESADLGGTMRLGAQEVELK
                     AGSLAAKIYGSEHIRERHRHRYEVNNNYVPTLEQAGLVIGGVSAGRERLVETIELPNH
                     PWFFACQFHPEFTSNPRKGHPLFTAFVKAALNNKKA"
BASE COUNT         1541 a         1598 c         1482 g         1257 t
ORIGIN      
        1 acattttgaa aggataccga tggaaccttc ctcctacgcg gcagaaaaaa aaggcaaagg
       61 cggcatcagg cgcgtcatta acgcattcgg ctattcgata gacggcatcg ccgccgccta
      121 ccgttacgaa gcggcattcc gtcaggtttt gtggctgaac gtactgctgg tgtgcgcggc
      181 atttttttgg gtttccgaaa ccgccgtccg cctgccgttg attatcgcgt cttttgtgtc
      241 ggtcattgtc gaactgttca acaccgccgt cgaagctgcc gtcgatcata cttcgaccga
      301 aaaacacgag ctggccaaac gcgccaaaga cgcaggttct gccgcacaat tgttcgcgat
      361 gctgatgttg gcggcggttt ggctgtctgc cctgttcggg taaaacgctt gcagcaggat
      421 ttgtaatcct ttaggattag tatgtggtat ttattattca cttaatccac tataagatta
      481 agcacattcc ccgtctgata ttcaaggagc agaaagatga aaaaattatt ggcagccgtg
      541 atgatggcag gtttggcagg cgcggtttcc gccgccggag tccacgttga ggacggctgg
      601 gcgcgcacca ccgtcgaagg tatgaaaata ggcggcgcgt tcatgaaaat ccacaacgac
      661 gaagccaaac aagacttttt gctcggcgga agcagccccg ttgccgaccg cgtcgaagtg
      721 catacccaca tcaacgacaa cggcgtgatg cggatgcgcg aagtcgaagg cggcgtgcct
      781 ttggaagcga aatccgttac cgaactcaaa cccggcagct atcatgtgat gtttatgggt
      841 ttgaaaaaac aattaaaaga gggcgataaa attcccgtta ccctgaaatt taaaaacgcc
      901 aaagcgcaaa ccgtccaact ggaagtcaaa accgcgccga tgccggcaat gaaccacggt
      961 catcaccacg gcgaagcgca tcagcactaa tctgctgaaa atatttgaaa tgccgtctga
     1021 aaaagcccgg gctttcagac ggcattttta tgactgcctt taaaatgtgt taaaatccgc
     1081 ctttaaaaac cgccgtttcc aaccatattc tacgcatgaa tacgacagca aacccttcca
     1141 atatcatcgt cgggctctcc ggcggtgtcg attcttccgt aaccgccgcc ctgctcaagc
     1201 agcagggtta tcaagtgcgc ggtgtgttca tgcagaactg ggaagacgac gacaacgacg
     1261 aatattgcag catcaaacag gattcgttcg atgccatcgc cgttgccgat attatcggca
     1321 tcgatatcga catcgttaat ttcgccgcgc aatataaaga caaagtcttt gcttattttc
     1381 ttcaggaata cagtgcgggg cgcacgccga atcccgatgt gttgtgcaac gccgaaatca
     1441 aattcaaatg ctttttggat tacgccgtag ggcagggcgc ggataccatc gccaccggac
     1501 actatgcgcg caaagaagtc cgcaacggcg tgcattacct gctcaaaggt ttggatcgaa
     1561 acaaagacca aagctatttc ctctaccgcc tcaagccttt ccaactcgag cgcgcgattt
     1621 ttccgttggg cggtttggaa aaacccgaag tccgccgcct tgccgccgag ttcaaactgc
     1681 cgactgccgc caaaaaagac agcacgggca tctgcttcat cggcgaacgc ccgtttcgcg
     1741 agtttctgca aaaatacctg ccgaccgaca acggtaaaat ggttacgccc gaagggaaaa
     1801 ccgtcggcga acacgtcggg ctgatgttct acacgctcgg acagcgcaaa ggtttaggca
     1861 ttggcggcgc gggcgaaccg tggtttgttg cggctaaaga tttgacgaaa aacgaactga
     1921 ttgtcgtgca aggacacgac catccgctgc tctatacccg cagccttgtg atgaacgatt
     1981 tgagtttcac gcttcccgaa cgcccgaagg caggacgcta tacctgcaaa acgcgttacc
     2041 gtatggcgga cgcgccttgt gagttgcgct atttggatga agaaaccgcc gagctggtgt
     2101 ttgacgaacc gcaatgggcg gttacgccgg gccagtctgc cgtgctgtat gagggcgatg
     2161 tctgcttggg cggcggcatt atccaatcaa ccgacaaacc cgtcatcatc acgcgataaa
     2221 ggtaatgccg tctgaaacgg ttttcagacg gcattgttcc gctcaattcc actttaaaga
     2281 ccgataccta tgaaaaaaat ctggttagac agctacgaga agggcgtcag tgccgaaatc
     2341 gacatcacgc aatacaattc cgtcagcgac gtattccgcc aaagcgtgga aaaatttgcc
     2401 gaccaacctg cttttcaaaa catgggtaag acgctgactt atgccgaaac cggcaaactg
     2461 gcaacagatt ttgcttctta tctgcaaaac gtccttaaat tgcctcgagg agagcgcgtg
     2521 gcaataatgt tgcccaatgt actgcaatat ccggttgccc ttttcggcat tttgcaggca
     2581 ggtttggtag cggtgaacac caatccgctc tataccccgc gcgagctgga gcatcagttg
     2641 aaagacagcg gcgcgaccgc catcatcgtt ttggaaaatt tcgccaacac gctggagctg
     2701 gtgctgccgc gcacgcagat caaacacgtc atcgtcgcct ctgtcggcga aatgttcggg
     2761 ctgcttaaag gttcgctgat caatttcatc atccggaaaa tcaagaaaat ggtgcccgaa
     2821 taccgtattc gggaaaccat ttcctttcag acggcattga aagaaggggc gaagcacgtt
     2881 ttccaacctg tcgcattaaa ccgcgaagat accgcgctgt tgcaatacac gggcggcacg
     2941 acaggtgttg ccaaaggggc ggtgctgagt cacggcaaca tctgcgccaa tatgcttcag
     3001 gcaaaagaat ggattaaaaa ccagttgcgc gagggcaaag aaaccgttat cgccgccctg
     3061 ccgctgtatc atatttttgc cttaaccgtg aatctgatga tttttgccaa tgccggctcg
     3121 aaaatcatcc tgattaccaa cccgcgcgat atgaaaggct ttatcggaga actgaaaaaa
     3181 cagcgggtta atgtatttat cggcgtgaac acgctgttta acgcgatggt taaccgtcct
     3241 gattttgccg aagtcgattt ttcaggattg cggctgactt tgggcggcgg tatggcgacc
     3301 caaaaagccg ttgccgaaaa atggaaaaaa atcaccggca cgcccatcgt cgaagcctac
     3361 ggtctgaccg aagccagccc cggcgtgtgc tgcaacccct taaacatcga atcatacagc
     3421 ggcagcatcg gtttgcccgt ctcgtccacc gaagtcgaac tgcgcgacgc aaacggcaaa
     3481 gaagtccccg tcgggcagcc gggcgaattg tgggtaaaag gccctcaagt gatgcaaggc
     3541 tactggaacc gccccgaaga aaccgccaaa gccatagacg cgcgcggctt cttggaaacc
     3601 ggcgatattg ccgtcatgga cgaaaaaggc tggttgaagc tggtcgatcg taagaaagac
     3661 ctcgtcgttg tttccggatt caatgtttat ccgaacgaaa tcgaggaagt catcgcgcat
     3721 cacggcaaag tcatggaagt cgcctgtatc ggcgttcccg acgaaaaaac cggcgaggca
     3781 ctcaaagtat tcgtcgtcaa aaaagacccg tcattgacca aagaagaact tatcgccttt
     3841 tgccgcaccg aattaaccgc atataaagta ccgaaaaata tcgaattccg cgacgagttg
     3901 cccaagtcca acgtcggcaa aatcctgcgc cgcgagttgc ggcaaagtac cgggaaataa
     3961 agaaaagatg ccgtctgaaa acagccgtcc accgttcaga cggcatccgt ccgtttgcca
     4021 gaaccgcgcg cttcacgtta aaatcacgca ttccaacatg ggtattccat catgaccaaa
     4081 ttcattttcg taaccggcgg cgttgtctcc tcactgggta aaggtatcgc cgccgcttct
     4141 attgccgcca tcctcgaatc gcgcggcttg aacgttacca tgctcaagct cgatccttat
     4201 atcaacgtcg atcccggcac gatgagcccg tttcaacacg gcgaagtgtt cgtaaccgac
     4261 gacggcgcgg aaaccgacct cgacttggga cactacgaac gtttcatcga ttccacgatg
     4321 acccgccgca acagcttcag cacggggcag gtgtacgaaa acgtcatcgc caaagaacga
     4381 cggggcgact acctcggcgg tacggttcaa gtcatcccgc acattaccga cgaaatcaaa
     4441 cgccgcatcc acgaaggcgc ggcaggttac gatgtggcga ttgtcgaaat cggcggtaca
     4501 gtcggcgata tcgaatcttt gccattcttg gaagccatcc gccaaatgcg cagccagctc
     4561 ggccgcaaca atacattgtt tgcccacctg agctatgttc cttacatcgc cgctgcaggc
     4621 gaaatcaaaa ccaagccgac ccagcacacc gttaaagaaa tgttgagcat cggtttgcaa
     4681 cccgacatcc tgatttgccg tatggacagg acaatgcctg cggacgaacg ccgcaaaatc
     4741 gccttgttct gcaacgtgga agaacgcgcg attgtcggca gctacgatgt ggacagcatc
     4801 tacgaatgcc ccgaaatgct gcacgaccaa ggcatcgata acatcattac cgagcagttg
     4861 cagcttaatg tgcagcaggc ggatttgacc gcgtggaaaa aaatcgtcca cgccatccaa
     4921 aacccgaaac acaccgtcaa aatcgccatg gtcggcaaat acgtcgattt gaccgagtcc
     4981 tacaaatcgc tgatcgaagc cttgaaacac gcaggcattc acaccgaaac cgacgtacaa
     5041 attacctttg ttgacagcga aagcatcgag aaaaacaacg gcgacgtttc tatgctcaaa
     5101 gatatggacg ccatcctcgt tcccggcggt ttcggttcgc gcggcgtgga aggcaaaatc
     5161 gccgctgtgc gctatgcccg cgaaaacaac gtgccatact tgggcatctg cctcggtatg
     5221 cagattgcgc tgatcgaata cgcccgcgac gtggcaggtt tgaaaggtgc gaattccacc
     5281 gagttcgacc tcaaatgcgc cgcccccgtc gttgccctga ttgacgaatg gcaaactgcc
     5341 gacggcagcg tcgaaacccg cgacgaatcc gccgatttgg gcggcaccat gcgtttgggc
     5401 gcgcaagaag tcgaattgaa agcaggcagc ctcgccgcca aaatctacgg cagcgaacac
     5461 atccgcgaac gccaccgcca ccgctacgaa gtcaacaaca actacgttcc tacgctggaa
     5521 caggcaggtt tggtcatcgg cggcgtatcc gccggacgcg aacgcttggt cgaaaccatc
     5581 gaactgccga accatccttg gttcttcgcc tgccagttcc accccgagtt tacctccaat
     5641 ccgcgcaaag ggcatccttt gttcaccgcg tttgtcaaag ctgcgttgaa caataaaaaa
     5701 gcctgataaa gcgttacttg atgatcaaaa tgccgtctga aagcctgaat gaagactttc
     5761 agacggcatt tttgcaaatc ggggatcata aaagccatca atttaatttt tatggtttta
     5821 tctaatattg accaactgaa tattgttaag cggggcgtga aactcaagtt gagacctt
//
LOCUS       DAXHNP010000125         5865 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.125, whole genome shotgun sequence.
ACCESSION   DAXHNP010000125 DAXHNP010000000
VERSION     DAXHNP010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5865
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.125"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            41..454
                     /locus_tag="ACFM5C_001656"
     CDS             41..454
                     /locus_tag="ACFM5C_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFC6069323.1"
                     /translation="MMPAYAYAALAFSAFTSATLLPGTSEAAFALFVRRFPEHAYGAL
                     LCAGLANGLGSMVSYWMGRLLPSRKMPSEKTLNLMRRFGIWLLPFAWLPVVGDALPLA
                     AGWLRLNPWTSGLMLVIGKTARYAFILWGMQYYAA"
     gene            500..1129
                     /gene="nth"
                     /locus_tag="ACFM5C_001657"
     CDS             500..1129
                     /gene="nth"
                     /locus_tag="ACFM5C_001657"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFC6069324.1"
                     /translation="MNRHIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATD
                     VGVNKATAKLFPVADTPQAMLDLGLDGVMEYTKTIGLYKTKSKHIMQTCRILLEKYNG
                     EVPEDREALESLPGVGRKTANVVLNTAFGHPVMAVDTHIFRVSNRTKIAPGKDVREVE
                     DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQCQTCIINDLCEYPAKA"
     gene            1267..2766
                     /locus_tag="ACFM5C_001658"
     CDS             1267..2766
                     /locus_tag="ACFM5C_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HFC6069325.1"
                     /translation="MFKKYQYLALAALCAASLAGCDKAGSFFGADKKEASFVERIEHT
                     KDDGSVSMLLPDFVQLVQSEGPAVVNIQAAPAPRTQNGSGNAETDSDPLADSDPFYEF
                     FKRLVPNMPEIPQEEADDGGLNFGSGFIISKDGYILTNTHVVTGMGSIKVLLNDKREY
                     TAKLIGSDVQSDVALLKIDATEELPVVKIGNPKDLKPGEWVAAIGAPFGFDNSVTAGI
                     VSAKGRSLPNESYTPFIQTDVAINPGNSGGPLFNLKGQVVGINSQIYSRSGGFMGISF
                     AIPIDVAMNVAEQLKNTGKVQRGQLGVIIQEVSYGLAQSFGLDKAGGALIAKILPGSP
                     AERAGLQAGDIVLSLDGGEIRSSGDLPVMVGAITPGKEVSLGVWRKGKEITVAVKLGN
                     ASEQTGSSSEPDKAPYAEHQSGTFSVESAGITLQTHTDSSGGRLVVVRVSGAAERAGL
                     RRGDEILAVGQVPVNDEDGFRKAMDKAGKNVPLLVMRRGNTLFIALNLQ"
     gene            2969..4489
                     /locus_tag="ACFM5C_001659"
     CDS             2969..4489
                     /locus_tag="ACFM5C_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFC6069326.1"
                     /translation="MQLIDYSHSFFSVVPPFLALALAVITRRVLLSLGIGILVGVAFL
                     VGGNPVDGLTHLKDMVVGLAWSDGDWSLGKPKILVFLILLGIFTSLLTYSGSNQAFAD
                     WAKRHIKNRRGAKMLTACLVFVTFIDDYFHSLAVGAIARPVTDKFKVSRAKLAYILDS
                     TAAPMCVLMPVSSWGASIIATLAGLLVTYKITEYTPMGTFVAMSLMNYYALFALIMVF
                     VVAWFSFDIGSMARFEQAALNEAHDETAASDATKGRVYALIIPVLALIASTVSAMIYT
                     GAQASETFSILGAFENTDVNTSLVFGGTCGVLAVVLCTLGTIKTADYPKAVWQGAKSM
                     FGAIAILILAWLISTVVGEMHTGDYLSTLVAGNIHPGFLPVILFLLASVMAFATGTSW
                     GTFGIMLPIAAAMAVKVEPALIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHI
                     DHVTSQLPYALTVAAAAASGYLALGLTKSALLGFGTTGIVLAVLIFLLKDKKRANA"
     gene            4546..5631
                     /gene="nagZ"
                     /locus_tag="ACFM5C_001660"
     CDS             4546..5631
                     /gene="nagZ"
                     /locus_tag="ACFM5C_001660"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HFC6069327.1"
                     /translation="MTVPHIPRGPVMADIAAFRLTGEERQRLLDPAIGGIILFRRNFQ
                     NIEQLKTLTAEIKALRTPELIIAVDHEGGRVQRFIESFTRLPAMSTLGEIWDKDGASA
                     AETAAGQVGRVLATELSACGIDLSFTPVLDLDWGNCPVIGNRSFHHNPEAVAHLALAL
                     QKGLAKGGMKSCGKHFPGHGFVEGDSHLVLPEDRRSLSELEAADLAPFHIMSREGMAA
                     VMPAHVVYPQVDTKPAGFSEIWLKQILRRDIGFKGVIFSDDLTMEGACGAGGIKERAR
                     ISFEAGCDIVLVCNRPDLVDELREDFRIPDNPALAQRWQYMANTLGSAAAQAVMQTAD
                     FQEAQAFVAGLASPQDTAGGVKVGEAF"
     gene            5712..5788
                     /locus_tag="ACFM5C_001661"
     tRNA            5712..5788
                     /locus_tag="ACFM5C_001661"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5746..5748,aa:Pro,seq:cgg)
BASE COUNT         1325 a         1805 c         1488 g         1247 t
ORIGIN      
        1 caatccgtcg ccgatttttg cctgtttgag actgtttgca atgatgcccg cctacgccta
       61 cgccgcgctc gccttttccg ccttcacttc cgccaccctc ctgcccggca catccgaagc
      121 cgcctttgcc ctgttcgtcc gccgctttcc cgaacacgca tacggcgcgt tgctgtgcgc
      181 cggccttgcc aacggattgg gcagtatggt ttcctattgg atgggacgtt tgctgccttc
      241 ccgaaaaatg ccgtctgaaa aaacactgaa tctgatgcgg cgtttcggta tttggctgct
      301 tccgtttgcc tggctgcccg tcgtcggcga cgcactgccg cttgccgccg gctggctgcg
      361 gttgaatccg tggacaagcg ggctgatgct ggttatcggc aaaacggcgc gttacgcctt
      421 cattctgtgg ggaatgcaat attacgccgc ctgaaccgtg cgttataatg ccgaccgcac
      481 aaaccgactg cacaaaaaaa tgaacagaca catccgccaa gaaattttcg aacgcttccg
      541 cgccgccaac ccccatccga ccaccgagct gaatttcaac tcccctttcg agcttttaat
      601 tgccgttctg ctttcggcgc aggcgaccga tgtcggcgta aacaaggcga cggcgaagct
      661 gtttccggtt gccgatacgc cgcaggcgat gctggatttg ggtttggacg gcgtgatgga
      721 atacacgaaa accatcgggc tgtataaaac caagtccaag cacatcatgc aaacctgccg
      781 catcctgctg gaaaaataca acggcgaagt gccggaagac cgcgaggctt tggaatcgtt
      841 gcctggcgtg gggcgcaaaa cggcaaacgt ggtattgaac acagcgttcg gacaccccgt
      901 tatggcggtc gatacgcata ttttccgcgt gtccaaccga accaaaatcg cccccgggaa
      961 agatgtgcgc gaagtcgaag acaaactgat gcgcttcatt cctaaagaat ttctgatgga
     1021 cgcgcaccac tggctgattt tgcacggacg ctacacctgc aaggcactca aaccgcaatg
     1081 ccaaacctgc atcatcaacg atttgtgcga atatcccgcc aaagcctgac cgccgccgcc
     1141 cttcaaaatg aaacgcttga aaattcggac ggacgttgta gaatttcaac ctatgccgtc
     1201 tgaagccgac aaaatgcgct tcagacggca ttaaagccgg taccggcatc cgacaaagga
     1261 caaaacgtgt tcaaaaaata ccaatacctc gctttggcag cactgtgtgc cgcctcgctg
     1321 gcaggctgcg acaaagccgg cagctttttc ggtgcggaca aaaaagaagc atctttcgta
     1381 gaacgcatcg aacacaccaa agacgacggc agcgtcagta tgctgctgcc cgactttgtc
     1441 caactggttc aaagcgaagg cccggcagtc gtcaatattc aggcagcccc cgccccgcgc
     1501 acccaaaacg gcagcggcaa tgccgaaacc gattccgacc cgcttgccga cagcgacccg
     1561 ttctacgaat ttttcaaacg cctcgtcccg aatatgcccg aaatccccca agaagaagca
     1621 gatgacggcg gattgaactt cggttcgggc ttcatcatca gcaaagacgg ctatattctg
     1681 accaatacgc acgtcgttac cggcatgggc agtatcaaag tcctgctcaa cgacaagcgc
     1741 gaatataccg ccaaactcat cggttcggat gtccaatccg atgtcgccct tctgaaaatc
     1801 gacgcaacgg aagagctgcc cgtcgtcaaa atcggcaatc ccaaagattt gaaaccgggc
     1861 gaatgggtcg ccgccatcgg cgcgcccttc ggcttcgaca acagcgtgac cgccggcatc
     1921 gtgtccgcca aaggcagaag cctgcccaac gaaagctaca cacccttcat ccaaaccgac
     1981 gttgccatca atccgggcaa ctccggcggc ccgctgttca acctgaaagg acaggtcgtc
     2041 ggcatcaact cgcaaatata cagccgcagc ggcggattca tgggcatttc cttcgccatc
     2101 ccgattgacg ttgccatgaa tgtcgccgaa cagctgaaaa acaccggcaa agtccaacgc
     2161 ggacaactgg gcgtgattat tcaagaagta tcctacggtt tggcacaatc gttcggtttg
     2221 gacaaagccg gcggcgcact gattgccaaa atcctgcccg gcagccccgc agaacgtgcc
     2281 ggcctgcagg cgggcgacat cgtcctcagc ctcgacggcg gagaaatacg ttcttccggc
     2341 gaccttcccg ttatggtcgg cgccattacg ccgggaaaag aagtcagcct cggcgtatgg
     2401 cgcaaaggta aggaaatcac cgttgccgtc aaactgggca atgcttccga acaaaccggt
     2461 tcctcgtccg agccggacaa agccccttat gccgaacacc aatccggtac gttctcggtc
     2521 gaatccgcag gcattaccct tcagacacat accgacagca gcggcggacg gcttgtcgtc
     2581 gtgcgggttt cgggggcggc agaacgcgca ggcttgaggc gcggcgacga aatccttgcc
     2641 gtcgggcaag tccccgtcaa tgacgaagac ggtttccgca aagctatgga caaggcaggc
     2701 aaaaacgtcc ccctgctggt catgcgccgt ggcaacacgc tgttcatcgc attaaacctg
     2761 caataacaca cataatttaa ccaaaatatt ttttaaatga taaaatgccc gtcaataccg
     2821 attaacgggc attttacaga aatcagttgg ttgattttaa acaaatattt tttacgacaa
     2881 aaaatatttc cgcccatttt gccaacaaaa cccaaaccgg aggcggacag atacgctccc
     2941 atccggacgc ttaacacccc cgtaaaccat gcagctgatc gactattcac attcattttt
     3001 ctcggttgtg ccaccctttt tggcactggc acttgccgtc attacccgcc gcgtactgct
     3061 gtctttaggc atcggtattc tggtcggcgt tgcctttttg gtcggcggca accccgtcga
     3121 cggtctgaca cacctgaaag acatggtcgt cggcttggct tggtcagacg gcgattggtc
     3181 gctgggcaaa ccaaaaatct tggttttcct gatacttttg ggtattttta cttccctgct
     3241 gacctactcc ggcagcaatc aggcgtttgc cgactgggca aaacggcaca ttaaaaaccg
     3301 gcgcggcgcg aaaatgctga ccgcctgcct cgtgttcgta acctttatcg acgactattt
     3361 ccacagtctc gccgtcggtg cgattgcccg ccccgttacc gacaagttta aagtttcccg
     3421 cgccaaactc gcctacatcc tcgactccac tgccgcgcct atgtgcgtgc tgatgcccgt
     3481 ttcaagctgg ggcgcgtcga ttatcgccac gcttgccgga ctgctcgtta cctacaaaat
     3541 caccgaatac acgccgatgg ggacgtttgt cgccatgagc ctgatgaact attacgcact
     3601 gtttgccctg attatggtgt tcgtcgtcgc atggttctcc ttcgacatcg gctcgatggc
     3661 gcgtttcgaa caagccgcgt tgaacgaagc ccacgatgaa actgccgctt cagacgctac
     3721 caaaggtcgt gtttacgcac tgattattcc cgttttggcc ttaatcgcct caacggtttc
     3781 cgccatgatc tacaccggtg cacaggcaag cgaaaccttc agcattttgg gtgcatttga
     3841 aaatacggac gtgaacactt cgctggtatt cggcggcact tgcggcgtgc ttgccgtcgt
     3901 cctctgcacg ctcggcacga ttaaaaccgc cgattatccc aaagccgttt ggcagggtgc
     3961 gaaatccatg ttcggcgcaa tcgccatttt aatccttgcc tggctcatca gtacggttgt
     4021 cggcgaaatg cacacgggcg actacctctc cacgctggtt gcgggcaaca tccatcccgg
     4081 cttcctgccc gtcatccttt tcctgctcgc cagcgtgatg gcgtttgcca caggcacaag
     4141 ctgggggacg ttcggcatca tgctgccgat tgccgccgcc atggcggtca aagtcgaacc
     4201 cgcgctgatt atcccgtgta tgtccgcagt aatggcgggg gcggtatgcg gcgaccactg
     4261 ctcgcccatt tccgacacga ccatcctgtc gtccaccggc gcgcgctgca accacatcga
     4321 ccacgttacc tcgcaactgc cttacgcctt aaccgttgcc gccgccgccg catcgggcta
     4381 cctcgcattg ggtctgacaa aatccgcgct gttgggcttt ggcacgacag gcattgtatt
     4441 ggcggtgctg atttttctgt tgaaagataa aaaacgcgcc aacgcctgac ccctttccct
     4501 gttcagacgg catatgccgt ctgaagcttt ttggagcaaa ccgcaatgac cgtcccccat
     4561 attccgcgcg gccccgtcat ggcagacatt gccgccttcc gcctgaccgg agaagaaagg
     4621 caacgcctgc tcgaccccgc aatcggcggc atcatcctct tccgccgcaa cttccaaaac
     4681 atcgaacaac tcaaaacact caccgccgaa atcaaagccc tgcgcacacc cgaactcatt
     4741 atcgccgtcg atcacgaagg cggcagggtg caacgtttca tcgaaagctt cacccgcctg
     4801 cccgcaatga gtacgctcgg cgagatttgg gacaaagacg gcgcgtccgc cgccgaaacc
     4861 gccgccggac aagtcggccg ggttttggca accgagcttt ccgcctgcgg catcgatttg
     4921 tccttcacgc ccgtcttaga tttggactgg ggaaactgcc ccgtcatcgg caaccgcagt
     4981 ttccaccaca atcccgaagc ggtcgcccac ctcgccctcg cccttcaaaa aggtttggca
     5041 aaaggcggta tgaaatcctg cggcaaacat tttcccggac acggatttgt cgaaggagac
     5101 agccatctgg tcttgccgga agacaggcgc agcctgtccg aactcgaagc cgccgacctc
     5161 gcccccttcc acattatgag ccgcgaaggt atggcggcgg ttatgcccgc ccacgtcgtt
     5221 tatccacaag tggacacaaa gcccgcaggg ttttccgaaa tctggctcaa acaaattttg
     5281 cgccgcgaca tcgggtttaa aggcgtaatt ttctcggatg atttgactat ggagggcgcg
     5341 tgcggggcag gcggcatcaa agaacgcgcc cgcatttcct ttgaggcagg ttgcgacatc
     5401 gtcctcgtct gcaaccgtcc cgaccttgtg gacgaactgc gcgaagattt ccgcattcct
     5461 gacaatcccg ctttggcgca acgttggcaa tacatggcca acacgctcgg cagtgccgcc
     5521 gcgcaagccg ttatgcagac ggcggatttc caagaggcgc aagcctttgt tgccggcctt
     5581 gcctcgccgc aagacacggc gggcggcgta aaagtcggcg aagcctttta aatccgcccg
     5641 acacgctgca aaaaggcaaa acggtatagg cacgccgtat tttttgcgct ataatcacgc
     5701 cttacttaat tcggaatgta gcgcagcccg gtagcgcact tcgttcggga cgaaggggtc
     5761 ggaggttcga atcctctcat tccgaccaaa tccaaaccgc ctcggcatcc attgccggag
     5821 cggtttttcc ttttggcggc aacagaaaaa tgccgtctga aacag
//
LOCUS       DAXHNP010000126         5831 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.126, whole genome shotgun sequence.
ACCESSION   DAXHNP010000126 DAXHNP010000000
VERSION     DAXHNP010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.126"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            131..973
                     /locus_tag="ACFM5C_001662"
     CDS             131..973
                     /locus_tag="ACFM5C_001662"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HFC6069328.1"
                     /translation="MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGK
                     GVRLFHDDKPSANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMWGGY
                     WLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAG
                     LTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTP
                     SDRVAVIATLPLTRDESWSQLAVDELVMFREGNIVRHDRPENPVYMSVEEGLETARAA
                     GVAV"
     gene            1003..1467
                     /locus_tag="ACFM5C_001663"
     CDS             1003..1467
                     /locus_tag="ACFM5C_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HFC6069329.1"
                     /translation="MKCPFCAHPDTRVADSRLMDERNAVRRRRYCPNCGKRFGTLETA
                     ELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTEHRLYTSGQRD
                     IPSAALADMVLKELLRQDTEAAVRFAALHKRFDNPADFASWLAQAVKTDRKA"
     gene            1499..2608
                     /gene="ribD"
                     /locus_tag="ACFM5C_001664"
     CDS             1499..2608
                     /gene="ribD"
                     /locus_tag="ACFM5C_001664"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFC6069330.1"
                     /translation="MFSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQG
                     FHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAA
                     MRDPNPLVAGKGLALLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSL
                     DGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQP
                     ARIVLDSRLRLPLDSHLLTDGQSPTYIATLERDEDKLRPYREHAHIRILMPSETADGK
                     IDLHRLMRLLADEGYGEVMVEAGAKLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLP
                     ENRAALSAPPLWTPVSTEILGHDVKTVFRKNGNAF"
     gene            2711..4129
                     /locus_tag="ACFM5C_001665"
     CDS             2711..4129
                     /locus_tag="ACFM5C_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6069331.1"
                     /translation="MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQT
                     AAGLTVSVLCLGLDQAYVREYYAAADKDILFKTLFLPPLLSAAAIAALLLSRPSLPSE
                     ILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVPKLAILLLLLTV
                     GLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRRAPFSSAVLHRGLRYGIPI
                     ALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFRA
                     IEANAPPARLSATAESAAALLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPPL
                     FCTLVEISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACAASFWL
                     FFVFKTESSCRLWQPLKRLPLYMHTLFCLASSAAYTCFGTPANYPLFAGVWAVYLAGC
                     ILRHRKDLHKLFHYLKKQGFPL"
     gene            4126..5197
                     /locus_tag="ACFM5C_001666"
                     /pseudo
     CDS             4126..5197
                     /locus_tag="ACFM5C_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
     gene            5217..>5831
                     /locus_tag="ACFM5C_001667"
     CDS             5217..>5831
                     /locus_tag="ACFM5C_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6069332.1"
                     /translation="MNITIVAPYCSLPSEPYFNRFWYLAERLSQSHDVLLITSRFRHY
                     DKSFRRPEDAEAASQDRLKVMLLEESGYGKNVSLERVASHYRFVKNFEQWLKNCRPGE
                     QDIVYSAYPLIATNLLLGKHKARLGYKLIVDVQDVWPESFSSVVPFLKKVPHKLLPFA
                     SRANRAYRCADALVAVSQTYLDRAKEANPNVPGEAVYIGTDFAAI"
BASE COUNT         1204 a         1929 c         1486 g         1212 t
ORIGIN      
        1 gaaccttaag tttccgtctt tgttttctgt tttcgcggga ataatgggga acaaaccgta
       61 tttcagacgg cattttcagt tcggggtata atccgaatac ttgcgaccat ctgaatcatt
      121 gggacaaact atgtgtcaac tgctgggcat gaactgcaat acgccgaccg atattatgtt
      181 ttcctttgaa ggcttccgcc ggcgcggcgg cattaccgac catcatgccg acggtttcgg
      241 catcggcttt ttcgaaggca aaggcgtgcg cctgttccat gacgacaaac ccagtgccaa
      301 ttcgcccgtc gccgacctcg tgcgcgccta ccagattaaa tcggaaaacg tcgtcgccca
      361 tatccgcaaa gcatcgcaag gacaaacctc gctggcgaac acccatccct ttatgcgcga
      421 aatgtggggt ggctactggc tgtttgccca caacgggcat ttgattgatt ttttccccga
      481 acagggcgaa tttttccacc ccgtcggcac aaccgattcc gaacgcgcgt tctgccacat
      541 cctcaaccgc ctgcgcaccc gctttgccgc ccgtcccgac gacgacacgc tgtttgacgc
      601 gattgcgggg ctgacgcacg aaatccgcaa gttcgggctg tttaacttta tgctttcaga
      661 cggcattgcc ctgtttgccc acgccagcac actgctgcac tacatcgtcc gccaagcccc
      721 gttcggcaag gcgcgcctgc tcgacgacga cgtgatggtc gattttgccg aagtaaccac
      781 gccctccgac cgcgtcgccg ttatcgccac cctgccgctg acccgcgacg aatcatggtc
      841 ccaacttgcc gtggacgaac tggtcatgtt ccgcgaaggc aacatcgtcc gacacgaccg
      901 tcccgaaaac cccgtttata tgagtgtcga agaaggtttg gaaaccgcgc gcgccgccgg
      961 cgtcgccgtc tgaacttcag acgacatagg aggacgaacc cgatgaaatg cccgttttgc
     1021 gcccaccccg acacccgcgt tgccgattcg cgcctgatgg acgaacgcaa cgccgtccgc
     1081 cgccgccgat actgccccaa ctgcggcaaa cgcttcggca cgctcgaaac cgccgaactc
     1141 aaaatgcccg ccgtcatcgg tccggacaaa aaacgttcgc cctttaatgc acaacgcctc
     1201 cgcaacgacc tgaccgccgc cgcccgaaaa tccgccctga cacccgaaca gatcgacgaa
     1261 accgtccgcc tgacggaaca caggctctac acttcgggtc agcgcgacat cccctctgcc
     1321 gcacttgccg acatggtgct aaaagaactg ctccgacaag atacggaagc cgccgtccgt
     1381 ttcgccgccc tgcacaaacg cttcgacaat ccggcagact ttgcctcgtg gctggcgcaa
     1441 gccgtcaaaa cagaccgcaa agcctgattc ccccaaccca tactgatacg gtatccccat
     1501 gttttccgaa acagatattt ctatgatgca aaacgccctc aaacttgccg ctttggggcg
     1561 tttttccact tcgcccaatc cgcgcgtcgg ctgcgttatc gcacaaggca gccaaattgt
     1621 cggacagggc ttccacgtca aagcgggcga accgcacgcc gaagtccacg ccctgcgtca
     1681 ggcgggcgaa atggcacaag gcgcgaccgc ctttgttacc ctcgaaccgt gcagccatta
     1741 cggacgcaca ccgccctgcg ccgaagctct gctccgttcc ggcgtaacac gcgtcgttgc
     1801 cgccatgcgc gaccccaacc cgctggttgc aggcaaaggg cttgccctgc tcgaagcagc
     1861 aggcatcaag acggaatgcg gtttactcga acatcaggca agggaactca accgaggctt
     1921 cctgtcgcgc atcgaacgcc gccgcccctt cgtccgcctc aaatgcgccg tttcgctgga
     1981 cggcaaaacc gccctttcag acggcagcag cttttggatt accggcgaag acgcgcgtgc
     2041 cgacgtacag gttttgcgtg ccgaaagctg cgcggtgctg accggcatcg gcacggtgtt
     2101 ggcggacaat ccccggctca acgtccgcgc ttttccaact ttgcgccaac ccgcacgcat
     2161 cgtgttagac agccgcctgc gcctgccctt ggacagccac cttctgaccg acggacaatc
     2221 tccaacctac atcgccacct tggaacgcga tgaagacaaa ctccgcccct atcgggaaca
     2281 cgcacatatc cgcatcctga tgccgtctga aacggcagac ggcaaaatcg acctgcaccg
     2341 cctgatgcgc ctccttgccg acgaaggata cggcgaagta atggtggaag ccggcgcgaa
     2401 actcacatcc gcctttttgg cggaagattt ggcggacgaa atcgtgctgt accgttcgcc
     2461 caaaatcctc ggcagcggca aagacctgtt ttccctgccc gaaaaccgcg ccgccctttc
     2521 cgcaccgccc ttatggacac ccgtttccac cgaaatcctc ggacacgacg tcaaaaccgt
     2581 attccggaaa aacggcaacg ccttttaaag ggtttgccgc cgtttcacta tataataacg
     2641 ccgtcaaatt ccgatcaaaa aaggcttcag acggcaccgg cggcatcccg cctccgcccg
     2701 gacatcaaaa atggacacaa aagaaatcct cggctacgcg gcaggctcga tcggcagcgc
     2761 ggttttagcc gtcatcatcc tgccgctgct gtcgtggtat ttccctgccg acgacatcgg
     2821 gcgcatcgtg ctgatgcaga cggcggcggg actgactgtg tcggtattgt gcctcgggct
     2881 ggatcaggca tacgtccgcg aatactatgc cgccgccgac aaagacattt tgttcaaaac
     2941 cctgttcctg ccgccgctgc tgtctgccgc cgcgatagcc gccctgctgc tttcccgccc
     3001 gtccctgccg tctgaaatcc tgttttcgct cgacgatgcc gccgccggca tcgggctggt
     3061 gctgtttgaa ctgagcttcc tgcccatccg ctttctctta ctggttttgc gtatggaagg
     3121 acgcgccctt gccttttcgt ccgcgcaact cgtgcccaag ctcgccatcc tgctgctgct
     3181 gctgacggtc gggctgctgc actttccggc gaacaccgcc gtcctgaccg ccgtttacgc
     3241 gctggcaaac cttgccgccg ccgccttttt gctgtttcaa aaccgatgcc gtctgaaggc
     3301 cgtccggcgc gcaccgtttt catccgccgt cctgcatcgc ggcctgcgct acggcatacc
     3361 gatcgcacta agcagcatcg cctattgggg gctggcatcc gccgaccgtt tgttcctgaa
     3421 aaaatatgcc ggcctagaac agctcggcgt ttattcgatg ggtatttcgt tcggcggagc
     3481 ggcattattg ttccaaagca tcttttcaac ggtctggaca ccgtatattt tccgcgcaat
     3541 cgaagcaaac gccccgcccg cccgcctctc ggcaacggca gaatccgccg ccgccctgct
     3601 tgcctccgcc ctctgcctga ccggcatttt ctcgcccctc gcctccctcc tgctgccgga
     3661 aaactacgcc gccgtccggt ttatcgtcgt atcgtgtatg ctgccgccgc tgttttgcac
     3721 gctggtagaa atcagcggca tcggtttgaa cgtcgtccga aaaacacgcc cgatcgcgct
     3781 cgccaccttg ggcgcgctgg cggcaaacct gctgctgctg gggcttgccg taccgtccgg
     3841 cggcgcgcgc ggcgcggcgg ttgcctgtgc cgcctcattt tggctgtttt ttgttttcaa
     3901 gaccgaaagc tcctgccgcc tgtggcagcc gctcaaacgc ctgccgcttt atatgcacac
     3961 attgttctgc ctggcctcct cggcggccta cacctgcttc ggcacgccgg caaactaccc
     4021 cctgtttgcc ggcgtatggg cggtatatct ggcaggctgc atcctgcgcc accggaaaga
     4081 tttgcacaaa ctgtttcatt atttgaaaaa acaaggattt ccattatgaa aatcatcctg
     4141 accacttcta tgtcgggctt gggcggcacg gaaaccgcca ccgtccgcct cgggcggctg
     4201 ctcaaacggc gcgggcacga catcatcctt gcttcttcgg acgggccttt tgtcggagag
     4261 gcgcaagcat cgggcatccg ttggcagccg gttgattttt actggggcgg gcttgccggc
     4321 tacctcaaaa gcacctttgc ctacgcccgg atgctgcgcc gcgaacaacc cgacatcatc
     4381 gactgccaaa tggcgcgtgt tgttccagcc tgcgcccttg ccgccaaaat cgtttcgccg
     4441 aaaaccaaaa tcatctacca ctcgcacggt ttggacgcgg caacctaccc caaaatcgcc
     4501 aaactcttcg acaagctggg cgtgtacatc atcggcaact gcaaacacga gcgcgaaaaa
     4561 ctcatccgcc acggcttccc cgcaggccgg attgcctacg cctacaacgc actccccccc
     4621 cccggaattt catttccgga aaaccgaaaa agaatgcgcc gtactcggca cgctttcccg
     4681 tttggacacc gtccgcgccg tgcatctgat gttggatatt ttgaagaaaa tggttgactg
     4741 cggtatgccc gtccgcctca acatagcggg cataggagaa gaaatggaca atttgaaagc
     4801 gcaggcggaa cgtttgggca tagatgacaa agttaccttc ctcggcggca tacgcgactt
     4861 gaccggctac ttcaaagaaa tcgatatttt ggtgaacacg ccgcattgcg tgggcgacca
     4921 cggcgcaggt gtcggcaaca acatcttgga agccggcctt tacgacacgc ccgtcgttac
     4981 ctacgatatg gcgggcattt ccgaaatggt cattaccggc cgaaccggct actgcatccc
     5041 cttcggcgac gaagaagcct ttatcgccgc cgtagacacg ctcgtcagac aaccggagtt
     5101 gcgcgaagca atgggcaaaa ggctgcacgc acacgtcgcc gcactctgtt ccgacgacga
     5161 aatctaccgt accaccatgg cggcgtatgc catgtaatgc cgtctgaaag ccgccgatga
     5221 acatcaccat agtcgccccc tactgctcgc tgccgtccga accgtatttc aaccgctttt
     5281 ggtatctggc agaacgattg tcgcaatcgc acgacgtgtt gctgattacc agccgtttcc
     5341 gccactacga caaatccttc agacggcccg aagatgccga ggccgcctcg caagaccgtc
     5401 tgaaagtcat gctgttggaa gaaagcggct acggcaaaaa cgtgtcttta gaacgtgttg
     5461 ccagccatta ccgcttcgtc aaaaattttg agcaatggct gaaaaactgc cggccgggcg
     5521 aacaagacat cgtctattcc gcctatccgc tgattgccac caacctgctg ttgggcaaac
     5581 acaaagcgcg tttgggctac aaactgattg tcgatgtgca ggacgtatgg ccggagtctt
     5641 tctcctcggt cgtaccgttt ttgaaaaaag taccgcacaa gctgctgccc tttgcttcac
     5701 gcgccaaccg tgcctaccgc tgcgccgacg cgctggttgc cgtatcgcag acttatctcg
     5761 accgcgccaa agaagccaat ccgaacgtac ccggcgaagc cgtctatatc ggtacggatt
     5821 ttgccgccat c
//
LOCUS       DAXHNP010000127         5826 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.127, whole genome shotgun sequence.
ACCESSION   DAXHNP010000127 DAXHNP010000000
VERSION     DAXHNP010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5826
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.127"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(98..1015)
                     /gene="thrB"
                     /locus_tag="ACFM5C_001668"
     CDS             complement(98..1015)
                     /gene="thrB"
                     /locus_tag="ACFM5C_001668"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFC6069333.1"
                     /translation="MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTT
                     SGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVA
                     CLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYDAWWTEACTRLLPVLSQ
                     DDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMY
                     DLAIAVNDWARTADNKLDEALEKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSR
                     LLDFHFPQAGEMTFIKDPNAFRNLLLSLG"
     gene            complement(1052..1780)
                     /gene="ubiG"
                     /locus_tag="ACFM5C_001669"
     CDS             complement(1052..1780)
                     /gene="ubiG"
                     /locus_tag="ACFM5C_001669"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061542 - 3-demethylubiquinol-n
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HFC6069334.1"
                     /translation="MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLR
                     LDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNN
                     VADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFST
                     INKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYH
                     VLSQTYALCDSTDVNYMFACRPAF"
     gene            1932..3173
                     /locus_tag="ACFM5C_001670"
     CDS             1932..3173
                     /locus_tag="ACFM5C_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015173 - aromatic amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015801 - aromatic amino acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter"
                     /protein_id="HFC6069335.1"
                     /translation="MPTKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLL
                     YTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYI
                     FVGGDLTAKGLGSALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTSVLIGGMVLTF
                     IWATGGLIADAKMPVLFDTQAPVGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGD
                     APKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQT
                     GNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLISC
                     LLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLF
                     GIVNIAAQVLSQMELVPVFKG"
     gene            3306..3869
                     /gene="gmhB"
                     /locus_tag="ACFM5C_001671"
     CDS             3306..3869
                     /gene="gmhB"
                     /locus_tag="ACFM5C_001671"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFC6069336.1"
                     /translation="MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGY
                     TVTVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKP
                     KPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHEL
                     PEHTQVFDTLLDFSQYIMQENAAPQAD"
     gene            3899..4642
                     /locus_tag="ACFM5C_001672"
     CDS             3899..4642
                     /locus_tag="ACFM5C_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6069337.1"
                     /translation="MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVKI
                     LNLSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFK
                     IPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLARKNEGYWITIFPEGTRLAPGKRGK
                     YKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELM
                     EKCEHLIETQQPLISGAGPFAAKMPSETV"
     gene            4639..5328
                     /locus_tag="ACFM5C_001673"
     CDS             4639..5328
                     /locus_tag="ACFM5C_001673"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6069338.1"
                     /translation="MTSLIHTLSDGMELTIEIKRRAKKNLIIRPIGTHTVRISVPPCF
                     SVSALNRWLYENEAVLRRTLAKTPPQTAENRLPESILFHGRQLALTAHQDTQILLMPS
                     EIRVPEGAPEKQLALLQDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVC
                     RKTTGIRLNRRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPEAKQWL
                     KIHGRELFALG"
     gene            5440..5625
                     /locus_tag="ACFM5C_001674"
     CDS             5440..5625
                     /locus_tag="ACFM5C_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069339.1"
                     /translation="MPEQARARPIQTAMTLCRRFGAGWRHTRRLPRFISHRSSETRNP
                     PGPTCGMKRLSWREVFY"
     gene            5639..>5826
                     /locus_tag="ACFM5C_001675"
     CDS             5639..>5826
                     /locus_tag="ACFM5C_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069340.1"
                     /translation="MPSERFSDGIFLRFPGWRRIRKRRSGWIVGWVETCRIRRICQIY
                     RRHSYESGNLERGVKKTC"
BASE COUNT         1359 a         1892 c         1385 g         1190 t
ORIGIN      
        1 aaaatactcg gctatcgtct cattttcgtt ttaatcagcc ataaaaatgc cgtctgaaac
       61 cctttcagac ggcatttctg tcaaacgccg gacgcactca acccaaactc aacagcaggt
      121 tgcggaacgc gttcgggtct ttgataaacg tcatctcgcc cgcctgcgga aaatgaaagt
      181 ccaacaggcg cgacacccaa aaacggatgc agccggcacg ttgggcggtc gggaaatacg
      241 ccttttcttc ggcactcaag gggcgcacgc cctcataacc gccgataaac gccttttcca
      301 acgcctcatc caacttattg tccgccgtcc ttgcccaatc gttgaccgca atcgccaagt
      361 catacataaa attgccccgg caggcataat agaaatcgat gaagcccgat acctgaccgc
      421 cgtcaagcaa cacattgtct ttaaacaggt cggcgtggat gatgcccgaa ggcagatgat
      481 tgccgagatt gtccttcagc gcatcgattt cggaacacag cagcgcggca tcgtcttgcg
      541 acaggacggg cagcagccgg gtgcacgcct ccgtccacca cgcatcgtaa cgcgggtttt
      601 ccatttccaa agggaaatcg gcggcggcaa ggtgcatttt ggccagcatc gcaccggtat
      661 ggaaacactg ctccgccgtc ggcagcgcgg tatccgaacc tttcaggcag gcaaccaaac
      721 aagccggctt gcccgccaaa acggaatcaa gccggccgtc tttgcgcgca accggcgcgg
      781 caaccgccac gcccttcata ctcaaatgcc ggttaagctc cagaaaaaac ggcagctctt
      841 cctgtttcaa cacttcaaac acggtcagca cataacgtcc cgaagtcgtc gtcagaaaat
      901 aattgctgtt ggtaatcccc tgcgcgatgc cctgcaggga aacaaattcc cccaaatcgt
      961 aaccgctcag gaagccgcgc atttcatcat cggaaacact ggtatagaca gacatatcaa
     1021 ctcacttgct caaaaacggg caaacccgcc gtcagaacgc cggacggcag gcaaacatat
     1081 aattcacatc ggtcgaatcg cacagggcat aagtttgcga caacacatgg taagtcatac
     1141 ccttcgtatc cgccacatcc aagcctgcct gacggcacat tcgcgccagc tcggcaggtg
     1201 cgatgaattt tttccagtcg tgcgtacctt tggggacaaa cttcaacaga tattccgccg
     1261 ccacaatcag atgcaggtac gatttcgggt ttttattgat ggtggaaaaa aacaccatgc
     1321 cgtccggttt gaccagattg gcacaagcac gcacgatggc ggcgggatcg gggacgtgtt
     1381 ccatcatttc catgcacgtt accacatcga acgagtgcgg ttccgcctcg gcaaggtctt
     1441 ccacgcggat acattcgtat tcgatatcgg cgacattgtt caaagccgcg tgcaggcggg
     1501 cggtttccag cgactgctcc gccatgtcga tgccctttac aaacgccgcg ccgcgccgcg
     1561 ccatactttc cgccaagatg ccgccgccgc agcccacgtc caaaacccgt ttgccgcaca
     1621 aatccgcgtg tccgtcgata taatccagcc gcagcggatt gatgtcgtgc aaggttttga
     1681 actcgcccga cttgtcccac catttgtcgg caatccggct gaatttggcg atttccccct
     1741 catcgacatt atattttttg tcggacattt tccctcccat ctgacgaacc gcccactcca
     1801 aaacccaaga ttatactatg gaacacaatg ccgtctgaaa gccttttcgg gcggcgcggc
     1861 gcaaatgcct tacaaatcct tacactttac ggcataatgg cggctcgctt tttctggcag
     1921 aaagacaaaa tatgcccacc aaaacccctt cactgttcgg cggcgcgatg attatcgccg
     1981 gcacggtcat cggcgcaggt atgctcgcca acccgaccgc cacatccggc gtatggttta
     2041 ccggctcgct ggccgtgttg ctgtacacct ggttttctat gctttccagc ggcctgatga
     2101 ttttggaagt caacacccat tatccgcacg gcgcaagttt cgacacgatg gtcaaagacc
     2161 tgctcggacg cggctggaac atcatcaacg gcatcgccgt cgccttcgtt ttatacctgc
     2221 tcacctacgc ctacatcttc gttggcggcg acctgaccgc caaaggctta ggcagcgcct
     2281 tgggcggcaa tgtttcactc accgtcggac aactcgtctt cttcggcatc ctcgcctttt
     2341 gcgtatgggc atccgcacgc ttggtcgacc gcttcaccag cgtcctcatc ggcggcatgg
     2401 tattaacctt tatttgggca accggcggcc tgattgccga tgccaaaatg cccgtcctgt
     2461 tcgacaccca agcccccgtc ggcaccaact actggattta cgccgccacc gccctgcccg
     2521 tctgccttgc gtcattcggt ttccacggca acgtctccag cctgctcaaa tactttaaag
     2581 gcgacgcgcc caaagtggct aaatccatct ggacgggcac actgattgcg ctggtaattt
     2641 acgtcctctg gcaaaccgcc atccaaggca acctgccgcg caacgagttc gcccccgtga
     2701 ttgccgccga agggcaagtc tccgtcctca tcgaaaccct gtccaaattc gcccaaaccg
     2761 gcaatatgga taaaatattg tccctatttt cctacatggc gatcgccacc tcgtttttag
     2821 gtgtaacgct cggactcttc gactacatcg ccgacatctt caaatggaac gacagcgtgt
     2881 ccggccgcac caaaaccgcc gcgctgacct tcctgccgcc tctaatttcc tgcctgctct
     2941 tccccaccgg ctttgttacc gccatcggct acgtcggcct ggcggcaacc gtctggacag
     3001 gcatcatccc cgccatgctg ctctaccgtt cgcgcaaaaa attcggcgca ggcaaaacct
     3061 ataaagttta cggcggcttg tggctgatgg tttgggtctt ccttttcggc atcgtcaaca
     3121 tcgccgcaca ggtattgagc caaatggaac tcgtccccgt atttaaagga taaaggcaaa
     3181 atgccgtctg aagcccgccg gcggcttcag acggcattgc ctcgttatca cgcggcacag
     3241 gcgcatcact gccgatattt cagtataatg ccacccccga cctgccccaa tccaaaggaa
     3301 acgcgatgaa actcatcatt ctcgaccgcg acggcgtcat caatcaggac cgcgatgact
     3361 tcgtcaaatc cgttgacgag tggatacctg tcgaaggcag catggatgcg gtggcatttc
     3421 tgacgcaggc aggctacacc gtcaccgttg ccaccaacca atccggcatc gggcgcaaat
     3481 attttaccgt tcaaaacctt accgaaatgc acgccaaaat gcaccgcctc gtccgtcagg
     3541 caggcggcga aatcaacggc atctggttct gcccgcacac cgatgccgac aactgcaact
     3601 gccgcaagcc caaaccgggt atgattgaag acatcatcgg acgcttcaac gcccaagcct
     3661 cggaaacctg gctggtcggc gacagcctgc gcgatttgca ggcaatcgat gccgtcggcg
     3721 gaaaacccgc gctggttctg accggaaaag gcaaaaaaac gctctcccaa cacggacacg
     3781 aattacccga acacacacag gttttcgata ccttgctcga tttctcacaa tacatcatgc
     3841 aggaaaacgc cgcaccgcaa gccgactgaa cataccgcat ttccgacaag gcaaaaccat
     3901 gctcatcatc cgcaacctga tttactggct gatactctgt tccaccctga ttttcctctt
     3961 tccctttatg ctgctcgcct cgcctttccg ggacggggcg cacaagatgg cgcgggtctg
     4021 ggtcaaaatc ctcaacctct cgctcaaaca catcgtcggg ctcaaatacc gcatcatcgg
     4081 cgcggaaaac atccccgacc gccccgccgt catctgcgcc aaacaccaaa gcggctggga
     4141 aacgcttgcc cttcaggaca tttttccgcc gcaggtttac gttgccaaac gcgagctgtt
     4201 caaaatcccc tttttcggct ggggtttaaa actggtcaaa accataggca tagaccgcaa
     4261 caaccgccgc gaagccaacg aacagctcat aaaacagggg ttggcgcgca aaaacgaagg
     4321 ctattggatt accattttcc ccgaaggcac gcgccttgcg cccggaaaac gcggcaaata
     4381 caaactcggc ggcgcgcgca tggcgaaaat gtttgagatg gacatcgtcc ccgtcgccct
     4441 caacagcggc gaattttggc cgaaaaactc ctttctgaaa tatccggggg aaatcaccgt
     4501 cgtcatctgt ccgaccatcc cgcacgcaag cggcagcgaa gccgaattga tggaaaaatg
     4561 cgaacacctc atcgaaacgc agcagccgct catttccggc gcaggcccgt ttgccgccaa
     4621 aatgccgtct gaaaccgtat gacctccctg atccacactc tttctgacgg catggaactg
     4681 actatagaaa tcaagcgccg tgccaagaaa aacctgatta tccgccctat cggcacacat
     4741 accgtccgca tcagcgtccc accctgcttc tccgtctccg ctctaaaccg ctggctgtat
     4801 gaaaacgaag ccgtcctgcg gcgaacactg gcgaaaacac cgccgcaaac tgccgaaaac
     4861 cggctgcccg aatccatcct cttccacggc agacaacttg ccctcaccgc ccatcaagac
     4921 acgcaaatcc tgctgatgcc gtctgaaatc cgcgttcccg aaggcgcacc cgaaaaacag
     4981 cttgcgctgc tgcaggactt tttggaacgg caggcgcaca gttacctgat tccccgcctc
     5041 gaacgccacg cccgcaccac acaactgttc cccgcctcct cctcgctgac ctctgccaaa
     5101 accttctggg gcgtgtgccg caaaaccaca ggcatacgcc tcaaccggcg gctggtcggc
     5161 gcaccggaat acgttgccga ttatgtctgc atacacgaac tctgccacct cgcccatccc
     5221 gaccacagcc ccgccttttg ggaactgacc cgccgcttcg ccccctacac gcccgaagcg
     5281 aaacagtggc tcaaaatcca cggcagggaa cttttcgcct taggctgacg cggtcccggg
     5341 ccggcatccg ccaattcaga cctcctccca aacggacatc cggaaagcag catcacagcc
     5401 ggcgacacat accgctgccg ccgctttcag acggcatccg tgccggaaca ggcacgcgcc
     5461 cgcccgattc aaaccgcgat gacgctttgc cgccggttcg gggcaggatg gcggcacacg
     5521 cgccgtctgc cgcgtttcat ttcacaccgc tcttccgaaa cccgaaaccc gcccggtccg
     5581 acgtgcggta tgaaacgctt aagctggcgc gaagtctttt actgatttgc ccgcgaaaat
     5641 gccgtctgaa aggttttcgg acggcatttt tttgcgtttc ccaggatggc ggcggattcg
     5701 taaaaggcgg tcagggtgga ttgtaggatg ggttgagacc tgccgaatcc gccgcatctg
     5761 ccaaatctac cgccgtcatt cctacgaaag tgggaatcta gaacgcgggg ttaagaaaac
     5821 ctgcat
//
LOCUS       DAXHNP010000128         5791 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.128, whole genome shotgun sequence.
ACCESSION   DAXHNP010000128 DAXHNP010000000
VERSION     DAXHNP010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5791
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.128"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            131..565
                     /locus_tag="ACFM5C_001676"
     CDS             131..565
                     /locus_tag="ACFM5C_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HFC6069341.1"
                     /translation="MPLPAPCRFAKPAASFLSMALLSCQLSHAATAYIPPNDFQPNCD
                     IRRLGLTQSQHNELRKIRTAFKMAGDRARLKVMHSEHSRRRSVVEIISSDVFNRNEAR
                     DYVESRYLSGMDFAVDELEIQHRFFHILTPQQQQMWLSSCLK"
     gene            complement(578..1441)
                     /locus_tag="ACFM5C_001677"
     CDS             complement(578..1441)
                     /locus_tag="ACFM5C_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6069342.1"
                     /translation="MELNEFFDKAYAVLRRLDAVLPPEPGHTDWNALAFRWQSAGKKG
                     FLEHLPDPHTFPLVRLAGVGRQTELLVRNTEQFIVGRPANNVLMSGARGTGKSSLVKA
                     LLHEYADKGLRLIEVDKSDLIGLPYLLTLLKERPEKFIVFCDDLSFESGDETYKALKT
                     ALDGGLSQRCANVLVYATSNRRHLMPEYFDENAGTTGMRGEIHQKEAVEEKISLSDRF
                     GLWLSFYPFDQNDYLAAVQNWLEDFGVPYDETAQMAALQWAQTRGSRSGRSAWQFACD
                     WAGRLPKQRAL"
     gene            complement(1449..2066)
                     /locus_tag="ACFM5C_001678"
     CDS             complement(1449..2066)
                     /locus_tag="ACFM5C_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFC6069343.1"
                     /translation="MFTGIVQGLGKLTAIHRPSEAFHTYVVELPQEAADNLQRGASVA
                     NNGCCLTITEIEGNRVSFDLMAETLAKTNLGLLKEGDCVNIERAARFGDEIGGHVMSG
                     HIMATVPIVEIERDGFNRTVWFSLPHELKPYILTKGFVGLDGCSLTIGKVEDGRFNVH
                     LIPETLERTLFGSRKVGDRINIEIDPNTQAIVDTVERLMAQRYAK"
     gene            complement(2229..2843)
                     /locus_tag="ACFM5C_001679"
     CDS             complement(2229..2843)
                     /locus_tag="ACFM5C_001679"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFC6069344.1"
                     /translation="MKTSNFSKRTSAMKTFALILADGQASRMGGEDKGLALLGGKALI
                     DHVIDRVRPQVSHIAISTNRNLEEYARRSPHIFPDARQWQHFGPLSALCTAANDLQLA
                     TADWLLVVPCDMPYLPDDLVARFETVSKRTPLCNAYYVETPITMHYNIMYIRPQILQS
                     AIPYLFSGMKTLRSWLQQQRARSVRFEFDGHFADLNTQIDLQEG"
     gene            3049..4821
                     /locus_tag="ACFM5C_001680"
     CDS             3049..4821
                     /locus_tag="ACFM5C_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite sensor histidine kinase"
                     /protein_id="HFC6069345.1"
                     /translation="MILPARFSDGISLSLRLKLLTGVWVGLAALSVVLTLLLSLRLEN
                     AASVIEEAGNLRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSD
                     TPLAYDLIQSMLIIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTW
                     WLRRFQWAIMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTPE
                     FKQVGRCFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQ
                     AAEHFLNRILPAVGADSGRVCLDGGSDVYVSIHHADCGTAASDLGKYHEEIFPIEYQN
                     ETLGRLLLSFSDGISLTGDDRTLLQTLIRQLGVSLASAKQEEEKRLLAVLQERNLIAQ
                     GLHDSIAQALTFLNLQVQMLETAFAENKREEAAENISFIKTGVQECYEDVRELLLNFR
                     TKISNKEFPEAVADLFARFTQQTGITVETAWENGSFLPPQEAQLQMIFILQESLSNIR
                     KHARATHVKFTLSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIHAV
                     LEIRSQAQQGTTVSLTVASEESLK"
     gene            4818..5474
                     /locus_tag="ACFM5C_001681"
     CDS             4818..5474
                     /locus_tag="ACFM5C_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6069346.1"
                     /translation="MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMI
                     SRLQPDVVLLDLNMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGY
                     LLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRELEI
                     LGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNVPQPVPE
                     "
BASE COUNT         1433 a         1634 c         1335 g         1389 t
ORIGIN      
        1 ttccgattcc gccgttatgt ctgcctgccg gacatacgta cgcattatta acaaaagtta
       61 accgcgataa taccatcttt cacacgtcaa tctagtatat ttcctaaaat ttccaacaag
      121 aggaaaagcc gtgccactgc ctgctccctg ccgttttgcc aaacctgccg cctctttttt
      181 aagtatggct ttgctttcct gtcagctttc ccacgccgcc acggcttata tccccccgaa
      241 cgattttcaa ccgaactgcg acatacgccg actcgggctg acccaaagtc agcacaatga
      301 gctgcgtaaa atccgcaccg ccttcaaaat ggcgggcgac agggcgcgtt tgaaggttat
      361 gcattccgaa cacagccgcc gccggtctgt cgtcgaaatc atttcttcgg atgtttttaa
      421 tcggaacgag gcgcgcgatt atgtcgaaag ccgctatttg tccggtatgg attttgcggt
      481 ggacgaattg gaaatccaac accgcttctt ccatatcctc acaccgcaac agcagcaaat
      541 gtggctttct tcctgcctca aataatcccc gaaacgctca caacgcccgt tgtttcggca
      601 gcctgcccgc ccagtcgcag gcaaactgcc acgcggaacg tcccgaacgg ctgccccgcg
      661 tctgcgccca ctgcaatgcc gccatctgtg cggtttcatc atacggcacg ccgaaatctt
      721 ccagccaatt ttgcaccgcc gccagataat cgttttgatc gaacggataa aaactgagcc
      781 acaatccgaa tcggtcggac agggatattt tttcttccac cgcttctttc tgatggattt
      841 ccccccgcat ccccgtcgta ccggcattct cgtcaaaata ttcgggcatc aggtgccgtc
      901 tgttggaagt cgcgtaaacc aaaacgttgg cgcaacgttg agacagaccg ccgtctaacg
      961 cggttttcaa tgccttatag gtttcatcgc cgctttcaaa cgacaaatcg tcgcaaaata
     1021 cgataaattt ttccggacgt tccttcaaaa gcgtcaacag gtaaggcagg ccgattaaat
     1081 cgcttttatc gacttcgatc aggcgcaatc ccttatccgc atattcgtgt agcagggctt
     1141 tgaccagcga ggatttgcct gttccgcgcg cgccgctcat caatacattg ttcgcgggtc
     1201 tgccgacaat gaactgttcg gtattacgca ccagcaattc ggtttgcctg ccgactcccg
     1261 ccagccttac caagggaaag gtgtgcggat cgggcaagtg ttccaaaaaa ccttttttgc
     1321 ccgcactctg ccagcggaag gcaagcgcgt tccaatccgt atgcccgggt tcgggcggaa
     1381 gcacggcatc caaacgccgc aaaacggcat aggctttatc gaaaaattcg ttcaattcca
     1441 tctctacctc actttgcata tctttgcgcc atcagccgtt cgacggtgtc gacgattgcc
     1501 tgcgtattcg gatcgatttc gatgttgatc ctgtcgccga cctttctgct gccgaacagc
     1561 gtccgttcca aagtttcggg aatcagatgg acattgaaac ggccgtcttc gactttgcct
     1621 atggtcaggc tgcaaccgtc caagccgacg aaccctttgg tcaggatata gggtttgagt
     1681 tcatgcggga gcgaaaacca aaccgtgcgg ttgaacccgt cccgttcgat ttcgacaata
     1741 ggcacggttg ccataatgtg tccgctcatg acgtgtccgc cgatttcgtc tccgaaacgc
     1801 gccgcccgtt cgatgttgac gcaatcgcct tccttcagca gccccaaatt ggtttttgcc
     1861 aaagtttccg ccattaaatc gaaactgacg cggtttcctt cgatttcggt aatcgtcagg
     1921 cagcagccgt tattggcgac cgatgcgccg cgttgcagat tgtccgccgc ctcttgcgga
     1981 agctcgacga cataagtgtg aaatgcctcc gacgggcggt ggattgccgt cagttttccc
     2041 aatccttgaa caatgcctgt aaacataatc ctgtttccct gtgtcggtaa aaatggtgca
     2101 aattgtagca tctccccgcg aaaaatgccg tctgaaatgc cttcagacag cattatgcct
     2161 ccgattcggg caaaaaccgc ccggtatggc ttgacctttc ctttccacgc cggtcggcgg
     2221 tcttgccctt atccctcctg caaatcgatt tgcgtgttca agtcggcaaa atgcccgtca
     2281 aactcgaatc tgaccgaccg cgccctttgc tgctgcaacc agcttcttaa tgttttcata
     2341 cccgaaaaca gatagggaat cgcgctttgc agaatctgcg ggcggatata cataatgttg
     2401 tagtgcatcg ttatcggcgt ttccacataa tacgcattgc acaacggtgt gcgtttcgac
     2461 acggtttcaa acctcgccac caaatcgtcc ggcagatacg gcatatcgca cggcacaacc
     2521 aaaagccagt cagcagtcgc caactgcaaa tcgttggctg cggtacacaa tgccgaaagc
     2581 gggccgaaat gctgccactg ccgcgcatcg ggaaaaatat gcggacttct tcgagcatat
     2641 tcttccaaat tccggttggt gctgatggcg atatggctga cctgcggcct gaccctgtcg
     2701 atgacatggt ctatcagtgc cttacccccc aaaagagcaa gccccttgtc ctcgcctccc
     2761 atacggctcg cctgaccgtc ggccagtatc agggcaaaag ttttcattgc ggatgttctc
     2821 ttggaaaagt tcgaggtttt catgattgca gtctgccgtt cccaatgact caaaatgccg
     2881 tctgaagcag atggcaaata aattcatatt atctgaattt tatcataaca tgatttaaca
     2941 ctgaagcggt gcggattaag ttttccttaa ccaattcttt ctgagcagtt gtatctaatc
     3001 ccaaagaatg atattgtttg cattatttag aacaattttt cgccgagcat gatactgcca
     3061 gcccgttttt cagacggcat cagcctttcc ctacgcctga aactcctgac cggagtgtgg
     3121 gtcgggttgg cggcattgtc tgtcgttttg acactgctgc tctctttgcg tctggaaaac
     3181 gcggcctccg tcatcgaaga ggcgggcaac ttgagaatgc aggcataccg tctggcatac
     3241 atggcgggtg aaggatctcc ccgctcccaa atagacaatc aggttgacga atttgaaaaa
     3301 agcctgaatc gtatttcaca aagtgatgcc atccatccgc tgattccttc ggacacccct
     3361 cttgcttatg atttgataca atccatgctg attatagatt ggcaggcaca catcctcccc
     3421 ccgctccagt cctaccggcg accgactcag gtcgatctct accgctttgc cggaaacatc
     3481 gaactgtttt tgcaggcatt ggaaaatgcc aacgaaaaaa acacatggtg gctcaggcgt
     3541 tttcaatggg caattatgtt gatgacgctg gtgtcgtctg tactgatgct gttttggcac
     3601 cagatttggg ttatccggcc gctgcaggcg ttaagggaag gtgcggaacg catcggacgg
     3661 aggtgtttcg atattccggt tcccgaaggc ggtacgccgg aattcaaaca ggtcgggcgt
     3721 tgtttcaatc aaatgggcgg caggttgaaa attttatatg atgatttgga aggacaagtc
     3781 gccgagcaga cacgcagtct cgaaaaacaa aatcaaaacc tgaccctgct gtaccaaact
     3841 acacgggacc tgcaccaatc ctacataccg caacaggctg cagaacattt tctaaaccgt
     3901 atcctgcccg ccgtaggagc agattccggc agagtttgtt tggacggcgg atccgatgtt
     3961 tatgtttcca ttcatcatgc ggattgcggc acagcagctt cggatttggg gaagtaccat
     4021 gaggaaatct tccccattga gtaccagaac gaaacattgg gcaggctgtt gctcagcttt
     4081 tcagacggca tttccctcac cggagacgac cgcacgctgc ttcaaaccct gattcggcaa
     4141 ttgggcgtat cgctcgctag cgcgaagcag gaagaagaaa aacgcctgct tgcagtattg
     4201 caggaacgca acctgattgc gcaaggatta catgacagca tcgcacaagc attaacgttc
     4261 ctaaacctac aggtacagat gctggaaacc gcctttgccg aaaacaaacg ggaggaagcc
     4321 gcagaaaaca tcagcttcat caaaacaggc gtgcaggaat gttatgaaga tgtccgcgaa
     4381 ctgctgctca acttccgtac caaaatcagc aataaagaat ttcccgaagc cgttgccgac
     4441 ctattcgccc gctttacgca acaaaccggg ataacggtcg aaaccgcctg ggaaaacggt
     4501 tcgttcctgc cgcctcagga agcgcagctc caaatgattt ttatcctgca ggaaagcctg
     4561 tccaacatcc gcaaacacgc ccgcgccacc catgtaaaat tcaccctttc cgaacacggc
     4621 ggacgcttta ccatgaccat ccaagacaac ggacaaggtt tcgacacgga gaaaatagga
     4681 gaacccacgg gcagccatgt cggactgcac atcatgcagg agcgtgccaa acgcatccat
     4741 gccgttttag aaatccgttc ccaagctcaa cagggaacca ccgtctcatt gacggttgca
     4801 tctgaagaaa gcttgaaatg actattaaaa ttattctgat agacgaccat accctcttcc
     4861 gcagcggcat taaagccctt ttgtcgcgcc aacacggttt tgaagtcatc ggcgaagccg
     4921 cagacggcct ctcgggcatc aaaatgatta gtcggctgca acccgatgtc gtcctgctcg
     4981 atttgaatat gcccggcatg aacggacgcg aagcactctc ccaaatcatc agcatcaatc
     5041 cgcagcaggc agtgattatg ctgaccgttt ccgaagacag cgacgacttg accgaatgta
     5101 ttcgcatcgg cgcgcgcggt tacctgctga aaaacatcaa cgctgacttt ctgctcgaaa
     5161 gcatacgcaa agccgccgaa ggcgataatg tattctcgcc cgagatgacc gccaaactcg
     5221 ttaaaagcct gatttccccc caacctgccc aagggacaca ggcactctcc tcacttaccc
     5281 ctcgcgaact ggaaatcttg ggctatctcg ccgcaggaca cagcaacaaa atcatcgccc
     5341 gccacctcga tcttgccgaa tccaccgtca aagtccacgt tcaaaacctg ctccgcaaac
     5401 tcaacctcag cagccgggtg caggccgccg tttacgccat ccggcacaac gtcccccaac
     5461 ctgtgccgga ataaggcggg ttcagacggc atattagggg ttttaatccc cgtacggtca
     5521 ttcggataac agaccaagca tgtaagttta tgcccccata agtacgcttg gcatagcagt
     5581 aatattgttc ggtttagtgt tttccgtttg cccctatctg atactgcaat atcaactatg
     5641 ccgtctgaaa acgcatcatc atgatatttt cagacggcat aataaaaagc ggaaatacta
     5701 atgcagggta aaatgttcca ttccgaatcc cataaatata caatggctta tatcgtttaa
     5761 gcatgtgtaa cccaccctca tatcaatcaa t
//
LOCUS       DAXHNP010000129         5739 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.129, whole genome shotgun sequence.
ACCESSION   DAXHNP010000129 DAXHNP010000000
VERSION     DAXHNP010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5739
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.129"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(12..188)
                     /locus_tag="ACFM5C_001682"
     CDS             complement(12..188)
                     /locus_tag="ACFM5C_001682"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069347.1"
                     /translation="MPSELQTAFSASQLQRERTHTAIPAKNRKSKKKPKIRHSRAGGN
                     PIRPVSVFFFLNFR"
     gene            complement(201..785)
                     /gene="rnhB"
                     /locus_tag="ACFM5C_001683"
     CDS             complement(201..785)
                     /gene="rnhB"
                     /locus_tag="ACFM5C_001683"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFC6069348.1"
                     /translation="MHILTAGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSE
                     KKRDALAEMIKNQAVAWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDG
                     NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
                     TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF"
     gene            complement(853..2748)
                     /gene="mnmG"
                     /locus_tag="ACFM5C_001684"
     CDS             complement(853..2748)
                     /gene="mnmG"
                     /locus_tag="ACFM5C_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFC6069349.1"
                     /translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIET
                     LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
                     DRILYKAAIREMLENQENLDLFQQAVEDVTLEGERISGVVTAMGVEFKARAVVLTAGT
                     FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSRL
                     TEQPGDTPVPVMSVRGSAEMHPRQVSCWITHTNLQTHDIIRSGFDRSPMFTGKIEGVG
                     PRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGL
                     ENAHILRPGYAIEYDYFDPRNLKASLETKTIQGLFFAGQINGTTGYEEAAAQGLLAGA
                     NAVQYIREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
                     LTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEEEQLRVFGQKLSR
                     EANLHDLLRRPNLDYAALMTLEGAMPSENLAAEVVEQVEIQVKYQGYIDRQNEEIDSR
                     RDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLK
                     RGFKDAK"
     gene            complement(3073..4500)
                     /locus_tag="ACFM5C_001685"
     CDS             complement(3073..4500)
                     /locus_tag="ACFM5C_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6069350.1"
                     /translation="MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQF
                     RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
                     WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
                     IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVV
                     PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
                     GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
                     DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
                     VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
                     KMGKDPEFKLSEHPGLKRRIKSDVW"
     gene            4660..5649
                     /gene="pdxA"
                     /locus_tag="ACFM5C_001686"
     CDS             4660..5649
                     /gene="pdxA"
                     /locus_tag="ACFM5C_001686"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HFC6069351.1"
                     /translation="MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRA
                     RAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTAL
                     AGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRV
                     ALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHL
                     GHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYH
                     SFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL"
BASE COUNT         1195 a         1527 c         1693 g         1324 t
ORIGIN      
        1 cggtttggaa gttacctgaa attcaaaaaa aaaaaaacgg aaaccggacg gattggattc
       61 ccgcctgcgc gggaatgacg gattttaggt ttcttttttg attttctgtt tttcgcggga
      121 atggcggtat gggttctttc tctttgaagt tgcgatgctg aaaatgccgt ctgaagttca
      181 gacggcattt ttgtgccggt ttaaaacagc gtctgctgcg cgagcaggtt tctgacgggg
      241 gcgaagtcgc ggcggtgttc gggcagcacg ccgtattgtt tgagggcttc cagatgttgc
      301 ttcgtgccgt aacctttgtg tttgtcgaaa ccgtattggg gatggcgttg cgccagtgcg
      361 tacatttccg catcgcgtgc ggtctttgcc aaaacggatg cggcggatat ttcgatgatt
      421 ttgctgtcgc ctttgacgac ggcttcggca gggatgttca aatgttcggg aatgcggttg
      481 ccgtcgatga atattttttc gggacgcaca gccaaaccgt caacggcgcg tttcatcgcg
      541 agcatggtgg cgtgcaggat gttgaggctg gcgatttctt cgggcgaggc ggcggcaacg
      601 tgccacgcaa ccgcctgatt ttttatcatt tcggcaagcg cgtcgcgttt tttctcgctg
      661 agttttttgg agtcggtcag tccgggcagg tcgaatattt ccggaaggat gacggcggcg
      721 gcaaacacgc tgccgactaa aggcccgcgc cctgcctcgt ccacgccggc ggtcagtatg
      781 tgcatgatgt ttcctgtcgg gatggtacga tgccgtctga aaagggtttc agacggcatc
      841 gtaccgatgt gtttatttcg cgtctttaaa cccgcgcttc aaatgcacca tcagcagtgc
      901 gacggcggca ggcgttacgc cggaaatgcg gctggcttgt ccgacagttt cgggtttgtg
      961 ctggttgagc ttttgctgta cttcggcgga taaaccttta actttgctgt aatcgatatc
     1021 ctcgggcagc tttaaggttt cgatgtcgcg gcggctgtcg atttcttcgt tttggcggtc
     1081 gatatagcct tggtatttga cttggatttc gacttgttcg accacttcgg cggcgaggtt
     1141 ttcagacggc atcgcgcctt ctagcgtcat cagcgcggcg tagtcgaggt tggggcggcg
     1201 caggaggtcg tgcaggttgg cttcgcggct gagtttttgt ccaaatacgc gcagctgctc
     1261 ttcttcggcg agtttttgcg gcgtgtacca cgttgttttc aaacgttgga tttcgcgttc
     1321 gatggcttcg cgtttttcgt tgaacatgcg ccattgcgct tcacccacca aaccgatttt
     1381 gtagccatct tcggtcaggc gcatatcggc gttgtcttcc ctgagttgca ggcggtattc
     1441 ggcgcggctg gtgaacatgc ggtagggttc gttcacgcct ttggtgatga ggtcgtccac
     1501 caatacgccg agataggctt gttcgcggcg caacagcagc gggtcttgtt cgcggatgta
     1561 ttgcacggca tttgcgcctg cgagcaggcc ttgcgcggcg gcttcttcgt agccggtcgt
     1621 gccgttgatt tgtccggcga agaagagacc ttggatggtt ttggtttcga gactggcttt
     1681 gaggttgcgc gggtcgaagt aatcgtattc aatggcgtag ccggggcgca ggatatgggc
     1741 gttttcgagg cctttcatgc tgcgcacgag ggcaatttga atatcgaacg gcaggctggt
     1801 ggagataccg ttggggtaat attcgtgcgt ggtcaggcct tcgggttcga ggaaaatctg
     1861 gtggctgtct ttgtcggcga agcggttgat tttgtcttcg atggacggac aataacgcgg
     1921 gcccacgcct tcgattttgc cggtaaacat cgggctgcgg tcgaagcctg aacggatgat
     1981 gtcgtgggtt tgcaggttgg tatgcgtaat ccagcaggac acttggcgcg ggtgcatttc
     2041 ggcactgccg cgcacggaca ttaccggaac gggtgtgtcg ccgggctgtt cggtgagccg
     2101 agagaaatca atcgtgcgtc cgtcgatgcg cggcggcgtg ccggttttca gacggccttg
     2161 cggcaggttc aattcgcgca aacggccgcc caaggatttg gcggcagggt cgccggcgcg
     2221 gccgccttcg tagttttcca aaccgatgtg gattttgccg gacaaaaacg tgcctgcggt
     2281 caacacgacg gcgcgtgctt taaactccac gcccatcgcg gtaaccacgc cgctgatgcg
     2341 ttcgccctcg agtgttacgt cttcgacggc ttgttggaaa aggtcgaggt tttcttggtt
     2401 ttccaacatt tcgcggatgg cggctttata taggatacgg tctgcctgcg cgcgcgtggc
     2461 acgaaccgcc gcgcctttgc tggcgttcag gcggcgaaac tggatgccgg atttgtcggt
     2521 cgccaacgcc atcgcgccgc ccaatgcgtc aagttcgcgc acgaggtggc ctttgccgat
     2581 accgccgatg gaagggttgc acgacatttg tccgagcgtt tcgatattgt gtgagagcaa
     2641 aagcgtctgc gcgcccatgc gtgcggcggc aagcgcggct tccgtgccgg cgtgtccgcc
     2701 gccgacgacg ataacgtcgt aggttttggg gtaaatcatg tgggtcatgt gtgtattgcc
     2761 tgacggtgtt tcagacggca tttatagtgg attaacaaaa accagtacag cgttgcctcg
     2821 ccttagctca aagagaacga ttctctaagg tgctgaagta ccaagtgaat cggttctgta
     2881 ctatctgtac tgtctgcggc ttcgccgcct tgtcccgatt tttgttaaac cactatattc
     2941 aatatgccgt ctgaaaaacg aaatggattc aaaagtaaag ggttgggatt gtacgcttgt
     3001 tcgccctgtt tttacagtgt gcggaaaggg aaaagccgct tcgcggggaa gcggctccgg
     3061 taagggcggg atttaccaaa cgtcggattt gatacggcgt ttcaggcccg gatgttcgga
     3121 aagtttgaac tcggggtctt tgcccatttt cagcttggcg gtgtaatcgc gcagcagcat
     3181 aaacgccagt ggcgagagca gcaggatggc gacaaggttg atccacgcca taatgcccat
     3241 cgccatatcc gccatatccc agaccaaagg cacattggca accgcgccga aatagaccca
     3301 cgccaaaacc agcatacgga aaacggcggt aatcagccaa tggcttttga tgaattggac
     3361 gttggactcg gcataggcat agttgccgat aacggtggaa aaggcaaaca taaacaggat
     3421 gacggcgagg aagcccgcgc cccattgccc cacttggctg acaatcgccg cctgcgtcag
     3481 cgccgcaccg ctcaaatcgc cgtaaggctg ttggtaaatc aagatgatga aggcggtgca
     3541 agaacaaacg atgatggtat cgacaaacac gcccagcatt tgaatcatac cttgcgaaac
     3601 agggtgtttc acttcggcgg cggcggcggc gttcggcgcg gaacccatac ccgcctcgtt
     3661 ggaatacagg ccgcgtttga tgcccatcat catcgtttgc gaaatcagac cgccgagtaa
     3721 gccgcctgct gccgcgtcga atttgaacgc gcccgaaaaa atctgaccga acacgtccgg
     3781 aatcatcgga atattggtca aaatgatgaa aagcgcgata aagaggtaca aaaccgccat
     3841 cagggggacg acgatttccg ccgctttaga tatgcgcctg atgccgccga agataatcgg
     3901 cgcggttaaa atcaccaggg cgacgccgac ataatgaggc tcccaacccc acgccgcttt
     3961 gacggtatcg gcaatggtat tggtctgaac cgcttcaaac acaaagccga aacagaaaat
     4021 caggctcagg gcgaacaaca cgcccagcca tttctgcccc agcccttgag tgatgtagta
     4081 ggcagggccg ccccggaaat ggtggttgtc gtagtcgcgg actttaaaga gctgcgccag
     4141 cgaagattcg acaaacgccg aactcatacc gattaaggcg gttacccaca tccaaaacac
     4201 cgcgcccggt ccgccgactt tgatggcgat ggccacgccc gcgatattgc ccacgcccac
     4261 gcggctggca aggccggtta caaatgcctg aaacggcgtg atgccgtgag ggtcgtcccc
     4321 ctgtttgcgg ccgccgagca tttctttgat gctgcgcccg aacaggcgga attggacaaa
     4381 gcccgtggtt acggtgaaga aaagccccgt acccaaaagc atataaacca agtatgacca
     4441 catcggatcg ttgatggcgc cgacccagcc gtgcagccat tcggtaaagt tctcgttcat
     4501 atcgcttcct taaagttgaa actcgcacat attggcggta tgcaagcagg gtttaaattt
     4561 tgtaaacgcc cattctagca gattgtcaac aaaatcagaa aaatttacat cgccgcgcgg
     4621 ctgcggcgtt agaatcgcat tttgtttgga gcaaacacga tgaaacagcc tgtttttgcc
     4681 gttacttccg gcgagcctgc cggcatcggc cccgatattt gtttggactt ggcgtttgca
     4741 cgcctgccct gccgctgcgc ggtattgggc gacaaaaacc tattgcgcgc gcgcgccgaa
     4801 gccttgggca aaagcgtcgt cctgcgcgac ttcgatccag aatcaggcgg cgcggcatac
     4861 ggcgagctgg aagtgctgca catccctgcc gtcgaagcgg ttgaggcggg caaactcaat
     4921 cccgccaacg ccgcctatgt gctgcaactt ttggacaccg cgctcgcagg catttcagac
     4981 ggcattttcg acggcatcgt taccgcgccg ctgcacaaag gcatcatcaa cgacgcgcgc
     5041 gcaagcacag gttttttcag cggacacacc gaatatctgg cggaaaaaag cggcacgggg
     5101 caggtcgtga tgatgcttgc cggcaaaggc ctgcgcgtcg ccctcgtaac gacccacctg
     5161 ccgctgaaag acgttgccgc cgccatcacg caaccgctga ttgaaagcgt cgcacgcatt
     5221 ttgcatcacg acttaaaaca caaattcggc atcaaaaatc ccaaaatcct tgtcgccgga
     5281 cttaatcccc acgccggcga aggcggacac ctcggacacg aagaaaccga caccattatc
     5341 cctgcattgg aaaacctgcg ccgcgaaggg ataaaccttg ccggcccgta tccggcggac
     5401 acattgttcc agccgtttat gctcgaaggt gcggatgccg tattggcgat gtaccacgac
     5461 caagggctgc ccgtgttgaa ataccacagt ttcgggcagg gcgtgaacat cacgctgggt
     5521 ctgcccttta tccgcacctc tgtcgatcac ggcaccgcgc tcgatttggc ggcaaccggc
     5581 agggcggatt ccggcagcct gataactgcc gtggagaccg ccgtcgagat ggcgcgcggc
     5641 agcctttaaa gatgataaaa gacccgtcat ttccgcgcag gcggcatcgt ccaccctccg
     5701 ccgtcattcc cgcgcaggcg ggaatccaga ccttcgggc
//
LOCUS       DAXHNP010000130         5700 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.130, whole genome shotgun sequence.
ACCESSION   DAXHNP010000130 DAXHNP010000000
VERSION     DAXHNP010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5700
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.130"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            309..1256
                     /locus_tag="ACFM5C_001687"
     CDS             309..1256
                     /locus_tag="ACFM5C_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6069352.1"
                     /translation="MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLL
                     GIIMFGMGLTLKPSDFDILFKHPKAVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGV
                     ILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
                     GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI
                     MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLAIEVGMQNSGLAAALAAAH
                     FAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP"
     gene            complement(1409..2533)
                     /gene="rluD"
                     /locus_tag="ACFM5C_001688"
     CDS             complement(1409..2533)
                     /gene="rluD"
                     /locus_tag="ACFM5C_001688"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HFC6069353.1"
                     /translation="MQNTSFDNESDYSDDSDFASASETENRIGLTVPLELAGGRLDAV
                     LAKLLPDYSRSRLTSWIKEGAVIVNDKPSQPKDKMIGGEQICVTVRPSEENLAFVPEP
                     MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRLD
                     KETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRL
                     KMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREANHPLAGDPVYG
                     NPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLRL
                     EAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE"
     gene            2532..3335
                     /locus_tag="ACFM5C_001689"
     CDS             2532..3335
                     /locus_tag="ACFM5C_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFC6069354.1"
                     /translation="MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQD
                     ELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLH
                     PQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
                     KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESL
                     AILELAYQKLGKPQLAADTRRVLETNFPKSPFLTHAWQPDDMPWWRYWH"
     gene            complement(3393..5612)
                     /locus_tag="ACFM5C_001690"
     CDS             complement(3393..5612)
                     /locus_tag="ACFM5C_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HFC6069355.1"
                     /translation="MFRRWFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFA
                     FAGLMLCVLAGAAYGVFRTEAALSSQWWAEAVSGVPLTVEVADMPRSDGRRVQFAAKA
                     VDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
                     GTVGADRVLLHGGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRP
                     ELWQAFRPLGLTHLVSISGLHVTMVAVMFAWLAKRLLACSPRLPARPRAWVLAAGCAG
                     ALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALAAVLLFDPSAVLGVG
                     TWLSFGLVAALIWACSGRLHEGKRQTALRGQWAASVLSLVLLGYLFASLPLVSPLVNA
                     VAIPWFSWVLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLP
                     LLVLAVCAALLLLLPRGLGLRPWAVLLLAGFVFYRSPGVPENEVAVTVWDAGQGLSVS
                     VQTANHHLLFDTGTAAAAQMGIVPSLNASGIRYLDYLVLSHHDSDHDGGFQAVGKIPN
                     GGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLMPSERKNIDDNGKSCVLRVVAGGAAL
                     LVTGDLDTKGEESLVGKYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYA
                     NAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE"
BASE COUNT         1367 a         1805 c         1378 g         1150 t
ORIGIN      
        1 cggcttcgtc gccttgtcct gatttttgtt aatccactat atgtttcaac agaggacggc
       61 acatcaagca ccgcactgcg tgttgcccga acgagactac cctccgatta gattctatcg
      121 ctataaacag atgggtttca accgaaaagg aatggggata aagtccattt ccgacacctc
      181 tcgggcgatg ccgtctgaaa accaatctcc actttcagac ggcattgttt aggcacggtc
      241 attttgcaaa ttaaggttaa ggcgtgtatg cttgccttcc cttaaaaaca aacacgcaac
      301 gcattattat gaatatcctc agtaaaatca gcagctttat cggaaaaaca ttttccctct
      361 gggccgcgct ctttgccgcc gccgcttttt tcgcgcccga caccttcaaa tgggcggggc
      421 cttatattcc ttggctgttg ggcattatta tgttcggtat gggtttgacg ctcaaacctt
      481 ccgacttcga tattttgttc aaacatccca aagccgtcat catcggcgta atcgcacaat
      541 tcgccattat gccggcaacc gcctggctgc tgtccaaact gttgaacctg cctgccgaaa
      601 tcgcggtcgg cgtgattttg gtcggctgct gcccgggcgg tacggcttcc aatgtgatga
      661 cctatctggc gcgcggcaat gtggctttgt cggttgccgt tacgtctgtt tccaccctga
      721 tttccccatt gctgactccc gccatcttcc tgatgcttgc cggtgaaatg ctggaaatcc
      781 aagcggccgg tatgttgatg tccatcgtca aaatggtttt gctccccatt gttttgggtt
      841 tgattgtcca taaggttttg ggcagtaaaa ccgaaaagct gaccgatgcg ctgccgctgg
      901 tttccgttgc cgccatcgtg ctgattatcg gcgcggttgt tggggcaagc aaaggcaaga
      961 ttatggaaag cggcctgctg atttttgcgg ttgtcgtact ccacaacggc atcggctacc
     1021 tgctcggctt ctttgccgcc aaatggaccg gcctgcctta tgatgcacaa aaaacgctgg
     1081 ccatcgaagt cggtatgcaa aactcgggtc tggccgccgc gctggccgcc gcacactttg
     1141 ccgctgcgcc ggtcgttgcc gttccgggcg cattgttcag cgtgtggcac aatatctccg
     1201 gctcgctgct ggcaacttat tgggcggcca aagccggtaa acataaaaaa ccctaaacgc
     1261 ctttcatcat aatgccgtct gaacggggca aacaaaactg gcggtttctg cccggcccct
     1321 tcagacggcc tttgtttgaa atcggcgggg acgattgccc ggctgctccg gttcggctgc
     1381 ctgcgttcgc cccgcctttc aagccacctc actcccttac ataaaccact tcgacatcgt
     1441 agtcgtcttc gttccaatcg tcatcgtcgt ccgcgccgaa tttgtcctgc cattcctctt
     1501 cattgctcaa agacgaatcc aaaccggctt caagacggag gacagacaat aaatgatata
     1561 tgtcgtccgg aatcggtgcc tcaaacgaaa cggtttcgcc gctttccgga tgggtaaaac
     1621 tcaagcggta ggcgtgcaat gcctgacgcg cacccaaact tttaacggct tctttcaccg
     1681 tgtcgccgca cggatggcgc gggttgccgt aaaccgggtc gccggcaagc ggatggttgg
     1741 cctcacgcat atggacgcgg atttggtgcg tcctgcctgt ttcgagcgag cattcgatat
     1801 agctgtgggc aagatagcgt tccaacactt tgacgtgggt aacggctggt ttgccgccga
     1861 atttgacgac tgccattttc aggcggttgt gcggatcgcg tccgatttgg gtttcgattt
     1921 taccgtcaaa ggggacgatg ccgttggcga cggcgcggta gatgcgtttg accgtgcgtt
     1981 cttgaagctg cctcacgagg gaattttgcg ccgacagggt tttggcaacc accatcagcc
     2041 cgctggtttc tttgtccaaa cggtgtacga tgcccgcgcg cggaatttgg gacagctcgg
     2101 ggcaatgcgc caacaggccg ttgagcagcg tccccgtcca gttgcccgcc gccggatgca
     2161 ccaccagtcc ggccggtttg ttgacgacga tgacggtatc gtcttcgtaa acaatatcca
     2221 aagccatagg ctctggaaca aacgccagat tttcctcact cggacggacg gttacacaaa
     2281 tttgctcgcc gcctatcatt ttgtctttgg gttgcgaagg tttatcgttt acaataaccg
     2341 cgccttcttt aatccatgat gtcaggcggc tgcgcgagta gtcgggcaga agtttcgcca
     2401 acaccgcatc caaccgcccg ccggcaagct cgagcggaac ggtcagaccg atacggtttt
     2461 cagtttcgga agctgacgca aagtctgaat cgtcgctata atcggattca ttatcaaagg
     2521 aagtattctg catgaaaaaa attcttttaa cggtttcatt aggtttggca ctgagtgcct
     2581 gtgccactca aggtacggtc gataaagatg ctcagattac ccaagattgg agtgtggaga
     2641 agctctatgc cgaagcccag gacgaattga acagcagcaa ttatacgcgg gctgtcaagt
     2701 tatacgaaat cttggaatcg cgcttcccca ccagccgcca tgcccggcaa tcccaactgg
     2761 ataccgcata cgcctattat aaagacgatg aaaaagacaa ggctctggcg gcaatcgaac
     2821 gcttccgccg cctccatccg cagcatccga atatggatta cgcgctgtat ctgcgcggct
     2881 tggtgctgtt caacgaagac cagtccttct tgaacaaact ggcctcgcaa gactggtccg
     2941 accgcgaccc gaaagccaac cgcgaagcgt atcaggcctt tgcggaactc gtccaacgct
     3001 tcccgaacag caaatacgcc gccgatgcaa ccgcacgcat ggtcaaactg gtcgatgcac
     3061 tgggcggcaa tgaaatgtcg gtggcgcgtt actacatgaa acgcggcgca tatatcgccg
     3121 ccgccaaccg cgcccaaaaa attatcggca gctatcaaaa tacacgctat gtcgaagaat
     3181 cgctcgccat attggaactt gcctaccaaa aactcggcaa accgcagctt gccgccgata
     3241 cgcgccgcgt gttggaaacc aacttcccga aaagcccgtt tttgacgcac gcctggcagc
     3301 ccgacgatat gccctggtgg cgttactggc attaagccca tcttcgtaat gccgtctgaa
     3361 gccgtttcag acggcatttt atgtttcaaa cctcattcaa acggtttttt ctgccaatag
     3421 aatttatacc ctctcaaacg ttgagccttc acgccgccgc gtcccaagcc gaattgcagt
     3481 gcgcccgaca aatcggtacg cagcagtttg atgccgtgtg cgcggacacg gttctgcacc
     3541 gcttcggtcg gatgtttgta ggcgttggca taaccgcttg aagcaacggc atattcgggc
     3601 gagacggcat tgaggaacac gcccgacgag gacgtattgc tgccgtgatg tcccaaaacc
     3661 aaaacctggc tgtacaggtt gcctccatac ttgccgacca ggctttcctc gcccttcgta
     3721 tccaaatcgc ccgttaccag cagtgccgca ccgcccgcca caacacgcaa aacacaactt
     3781 ttcccattat catcgatgtt tttgcgttca gacggcatca aaaactcaaa atccacgccg
     3841 tcccattgcc aacgctgttc cgcacaatgc cgcgccccct cataaaattc cggctgcccg
     3901 gcataaatcc cgccgttcgg tatcttgccg actgcctgaa aaccgccgtc gtggtcgctg
     3961 tcgtgatgcg acaaaaccaa ataatccaaa tacctgattc ccgacgcatt caagctcggc
     4021 acaatcccca tctgcgccgc cgctgccgtt ccggtgtcaa acaaaagatg atgatttgcc
     4081 gtctgaaccg acaccgacaa accctgcccc gcatcccaaa ccgtaaccgc aacctcattt
     4141 tccggcacgc cgggtgaacg gtaaaacaca aaccctgcca acagcaacac cgcccacgga
     4201 cgcaaaccca agccgcgcgg cagcagcaac agcaaagcgg cacacaccgc caacaccaac
     4261 agcggcaaag gtgcggaggc aacggcaaac tcgggcgaca catcggcaag ccacaccaaa
     4321 aaccgcaaag tatattccgc caaaaatgcc cccaactgtt gcaaaggcgc aaacggcacg
     4381 accgaaccca gcaacgccag cggcgtcaat acccaagaaa accacggaat tgccaccgca
     4441 ttgaccaaag ggctgaccaa aggcagcgaa gcaaacagat aaccgagcaa aaccagcgac
     4501 aacaccgaag ccgcccactg cccgcgcaaa gcagtttgcc gttttccctc gtgcaaacgc
     4561 cccgagcacg cccatatcag ggccgccacc aaaccgaaag acagccaagt ccccacaccc
     4621 aagaccgccg acgggtcgaa cagcagcacc gccgccaacg cctgccacca cgtcgcccac
     4681 gccgacaatc ttcccctgcg ccaagcccac gcaaacgccg ccaacatcaa aacgctgcgc
     4741 tgcgtcggca cggaaaaacc ggcaagcagc gcgtaaaaca gcgcgcctgc acaccccgcc
     4801 gccaaaaccc acgcgcgcgg ccgggcagga aggcgcgggg aacaggcaag cagccgcttc
     4861 gccagccacg caaacattac cgccaccatc gtaacgtgca aacccgaaat actgaccaaa
     4921 tgcgtcagcc ccaacggccg gaacgcctgc cacaattcgg ggcgcaatgc cgactgttcg
     4981 cccacgctca acgcgcgcat cagcccgatg ccgtctgaaa gcccgccgtc cgcatccgcc
     5041 tgctgccaat tacggctgat gcggctgcgc caaaccgcaa tcccccaacc gcttccgcca
     5101 tgcagcaaaa ccctgtccgc accgaccgtc cccgcgccgc ctattccgtt ggataatgcc
     5161 cacgcctcac ggttcaaacc gcgcaggttc aactccccga cgacagggtg cacacgtgcc
     5221 gttatccgcc atctgctccc gaccgcccat tcgcgccgtt tgtagtccga cagcagcaaa
     5281 tcaaacgtcc gaccaccgct gtccacagcc tttgccgcaa actgcacacg ccgcccgtcc
     5341 gacctcggca tatccgccac ttccaccgtc aaaggcacgc ctgaaacggc ttctgcccac
     5401 cattgggaag acaatgccgc ctccgtcctg aatacgccgt aagccgcgcc cgccaacacg
     5461 cacagcatca gaccggcaaa cgcaaaacgc cttgcaaaca cagcaaaaac cgcaaaagcc
     5521 gccagccaaa acagccaatg cggcacgacc ggcagcgcga acgaagccgc cgcaccgaca
     5581 acccaacacg gcaaaaacca acgacggaac acgtctcccc accccagata tttcaaaaat
     5641 aaacggataa taaagcaaat ccgaaaaacc gtcataacaa gatttgaaaa tgatatagtg
//
LOCUS       DAXHNP010000131         5691 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.131, whole genome shotgun sequence.
ACCESSION   DAXHNP010000131 DAXHNP010000000
VERSION     DAXHNP010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5691
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.131"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            98..814
                     /locus_tag="ACFM5C_001691"
     CDS             98..814
                     /locus_tag="ACFM5C_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HFC6069356.1"
                     /translation="MNFENDDIIHAPTTSSLILEERHDSELFRVYALILDGITDQVLL
                     PGKKLTESELCRQMVCSRNTVRGALSLLAHDKIVDLQPNRGAFVHVPDLKEMQDVFNA
                     RIEMETMILNILADLPDLETRLKPLYAMIRREEEASGRGDRVGWNRLSNAFHVELARL
                     VGNDVLFDIMNTLCARSSLIVAVAGVHREEKHAINTHTHSEHREILDLLLAGRRNRVV
                     KILRRHLGNCMERLEKTLED"
     gene            963..1865
                     /locus_tag="ACFM5C_001692"
     CDS             963..1865
                     /locus_tag="ACFM5C_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HFC6069357.1"
                     /translation="MDSLMTLISVLIPMFAGFFIRVPKPYLPALDKVLSVLVYAVLLL
                     IGVSLSRVEDLGSRLDDMALTVLWLFVCTVGTNLLALAVLGKLFPWRIKGKGKGVSVG
                     VSGSVGQLGCVLLGFASGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGLSLRQVL
                     VNRRGIRLSVWFMLSSLSGGLLFAASADGVSWTKGLAMASGFGWYSLSGLVMTEAYGA
                     VWGSIMLLNDLARELFALAFIPLLMKRFPDAAVGVGGATSMDFTLPVIQGAGGLEVVP
                     VAVSFGVVVNIAAPFLMVVFSTLG"
     gene            1908..2681
                     /locus_tag="ACFM5C_001693"
     CDS             1908..2681
                     /locus_tag="ACFM5C_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HFC6069358.1"
                     /translation="MKPKIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIREL
                     EDAGSLKRHHGGASSGGNLPEGLPASRQIQCQNEKNAIARLIAEHIPDESSLFVSIGT
                     TMEAVASELVRRRGSLRIITNNIHVASIVSARTDYTVIITSGVVRPLDGGITGVATVD
                     FINQFKVDYAVMSTHGVESDGSLLDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNAL
                     VRLGDITAFDKVFTDRLPDTAMQKMLKEAGVECLIADAV"
     gene            2793..4481
                     /locus_tag="ACFM5C_001694"
     CDS             2793..4481
                     /locus_tag="ACFM5C_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HFC6069359.1"
                     /translation="MLNKDQFADNHFIRTFIEEDLKSGKHETIQTRFPPEPNGYLHIG
                     HAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEYVNAIKEDVEWLGFHWAGEPRFAS
                     NYFDQLYDYAVGLVKDGKAYVDDLTPEEMREYRGTLTEAGKNSPYRDRSIEENLDLFT
                     RMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIRRAHHHNTGDKWCIYPMYDYTHC
                     ISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPAPHATRPRQYEFSRLELLYTITSKRK
                     LNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLFAKRAGISKSENIVDMSVLEGA
                     IREELENSAPRLMAVLNPLKVTLTNFETGRTQSRRAAFHPNHEEMGEREVPISQTIYI
                     EADDFAENPPKGFKRLIPGGEVRLRHGYVIKCDEVVKDEAGNVVELKCSIDHDTLGKN
                     PEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTVERPDAVRGEDGEYLPFTDFLNPESVK
                     EITAYAEPAAKDLPAESRWQFERIGYFVTDRKDHGKDTPVFNRTVTLKDSWQPK"
     gene            4574..5530
                     /gene="gshB"
                     /locus_tag="ACFM5C_001695"
     CDS             4574..5530
                     /gene="gshB"
                     /locus_tag="ACFM5C_001695"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HFC6069360.1"
                     /translation="MKVLFIADPMASFKTYKDTTYAMMREMAKRGWRLFHTLSGELSV
                     KNGLVVADASAFEFLGAQDDHDKNWFAAADKVQTALKAFDAVIMRTDPPFDMQYLYAT
                     QLLTLAEQQGAKVFNSGQAMRDFNEKLAILNFSRFTAPTLVTTRSADVRAFLKEHGDI
                     IIKPLDGMGGMGIFRLTEKDPNIGSILETLMQLDSRTIMAQRYIPEIVHGDKRILIIG
                     GEVVPYALARIPQNGETRGNLAAGGRGVAQELGGRDREIAETLAPELKRRGILLAGLD
                     VIGSNLTEVNVTSPTGFQEIMKQKGFDVAAMFADAVAAWSVR"
BASE COUNT         1332 a         1540 c         1570 g         1249 t
ORIGIN      
        1 aatttgtgca atgctttaat tcctctgaca cgatttgaaa cacagccgcc ttaaaatatc
       61 ttaaaaaatt tgaaagcgta aaaatacgga aaacatcatg aactttgaaa acgacgacat
      121 tatccatgcg ccgactacgt cttccctgat tctcgaagag cggcacgatt ctgagctgtt
      181 ccgtgtttac gccctgattt tggacggcat taccgatcag gtgctgctgc ccggcaaaaa
      241 gctgaccgaa tccgaacttt gccgtcagat ggtgtgttcg cgcaacaccg tccgcggcgc
      301 gctgtcgctt ttggcgcacg acaagattgt cgatttgcaa cccaacaggg gcgcgttcgt
      361 ccacgttccc gatttgaaag aaatgcagga tgtgttcaat gcgcgcatcg aaatggagac
      421 gatgattttg aatatcctcg cagatttgcc ggatttggaa acgcgcctca agccgcttta
      481 tgcgatgata cggcgcgaag aagaggcctc cggcaggggc gaccgcgttg gctggaaccg
      541 cctgtccaat gccttccacg tcgaactggc gcgcctggtg ggcaacgatg tgctgttcga
      601 cattatgaac acgctgtgcg cgcggtcttc cctgattgtc gccgtggcgg gcgtgcatcg
      661 cgaggaaaaa cacgccatca atacgcatac gcattcagaa caccgcgaaa tcctcgacct
      721 gctgctggcg ggcaggcgca accgcgtggt caaaatcctg cgccgccatt tgggcaactg
      781 tatggagcgt ttggaaaaga ctttggaaga ttgaatgccg gagcggataa gccgcctgaa
      841 ccttcaggcg gttttttaat ggcgaacctg atgccgtctg aaatatggat gcgggtatct
      901 gcaattttca gacggcaatt tttaaaccgc acatatcatg cggcaataaa ggaggccagg
      961 agatggacag cctgatgaca ttgatttcgg ttttgatacc gatgtttgcc ggatttttta
     1021 tccgtgtgcc caagccttac ctgcccgctt tggataaggt gctatcggtt ttggtgtatg
     1081 ccgtgctgct gctgatcggc gtatcgttgt cgcgcgtgga ggatttgggt tcgcggttgg
     1141 acgatatggc gttgacggtt ctgtggctgt ttgtttgtac ggtcgggacg aacctgcttg
     1201 ctttggcagt gttgggaaag ttattcccgt ggcggataaa ggggaaaggg aagggcgttt
     1261 cggtcggtgt gtcgggcagt gtggggcagc tcggatgcgt gctgctcgga tttgcatccg
     1321 gcaaactgat gcgcgatatt tggatgccgt ctgaaagcgc gggcatgtat tgtctgatgc
     1381 tgctggtgtt cctcatcggc gtacagctca aaagcagcgg cctatcgttg cggcaggttt
     1441 tggtcaaccg caggggtatt cggttgtcgg tctggtttat gctttcatct ctttcgggcg
     1501 ggctgctgtt tgccgcatcg gcagacggtg tgtcgtggac gaaaggtttg gcgatggctt
     1561 ccggcttcgg ttggtattcc ctctcgggtt tggtcatgac cgaggcttac ggcgcggtat
     1621 ggggcagcat catgctgctg aacgatttgg cacgagagct gtttgcactg gcatttatcc
     1681 cgctgctgat gaagcgtttt ccggatgcgg cggtgggggt tggcggtgcg accagtatgg
     1741 attttacatt gcccgtgatt cagggtgcgg gcggtttgga agtcgtgccg gtagcggtca
     1801 gcttcggcgt ggtggtcaat attgccgccc cgtttctgat ggtggtgttt tccacgctgg
     1861 gctgaacgcg gtaaaatcgg catcccgatg caaggaggca gaaaacgatg aaaccgaaaa
     1921 tccaaaggca cggagagatt ttaagccttg tccgccggca tcagtttatg tcggtggacg
     1981 agcttgccgc cgcattggac gttaccccgc agacgatacg ccgcgacatc cgcgaattgg
     2041 aggatgctgg cagcctgaaa cgccaccacg gcggcgcatc ctcgggcgga aacttgccgg
     2101 aggggctgcc tgccagccgc caaattcaat gtcaaaacga aaaaaacgcc attgcccggc
     2161 tgattgcgga acatattccc gacgagtcat cgctgtttgt cagtatcggc acgacgatgg
     2221 aagccgtggc atcggagctg gtgagacggc gcggcagcct gcggattatt accaacaata
     2281 tccacgtcgc ctccatcgtt tcggcgcgga cggattacac ggtcatcatc acttccggag
     2341 tcgtccgccc tttggacggc ggcattaccg gcgtggcaac cgtcgatttt atcaaccagt
     2401 tcaaagtcga ttatgccgtg atgagtacgc acggcgtgga aagcgacggt tcgcttttgg
     2461 acgacgacta caaagaagtc agcgtgatgc aggcgatgat tgccaacgcg cgcgtccgct
     2521 tcctcggcgt ggaccacagt aaattccgca gcaacgcgct ggtcaggctc ggcgacatta
     2581 cggcgtttga caaagtattt accgaccggc tgcccgatac cgcgatgcag aagatgctga
     2641 aagaggcggg ggtggaatgc ctgattgccg atgccgtctg aacgctatgt caaagcgcgc
     2701 aagtcgggta caataaacac atcatcaaac cgcttcagac ggcataagga accgccccaa
     2761 tgccgtctga agccatctgt tcaaagaaaa ctatgctcaa taaagaccaa tttgcggaca
     2821 accattttat ccgcaccttc atcgaagaag acctcaaaag cggcaaacac gaaaccatcc
     2881 aaacccgttt tccgccggag cccaacggct acctgcacat cggacacgcc aaatccatct
     2941 gcctgaactt cggtttggcg tatatttacg acggcttgtg caacctgcgt tttgacgata
     3001 ccaaccccga aaaagaaaac gacgaatacg tcaacgccat caaagaagac gttgagtggc
     3061 tcggtttcca ttgggcgggc gagccgcgtt tcgcttccaa ctatttcgac cagctttatg
     3121 actacgccgt cggtttggtt aaagacggca aagcgtatgt cgatgatttg acgccagaag
     3181 aaatgcgcga ataccgcggt acgctgaccg aagcaggcaa aaacagccct tatcgcgacc
     3241 gcagtatcga agaaaacctc gacctgttca cgcgcatgaa aaacggtgag ttccccgacg
     3301 gcagcaaaac cctgcgcctg aaaatcgaca tggcatccgg caacatcaat atgcgcgatc
     3361 cggtcatcta ccgcatccgc cgcgcccatc accacaacac cggcgacaaa tggtgcatct
     3421 atccgatgta cgactacacg cattgtattt ccgatgccat cgaaggcatc acgcattcct
     3481 tgtgtacgct cgaatttgaa gcccatcgtc cgctgtatga ctgggtgttg gacaacatcc
     3541 ccgcgccgca cgccacacgt ccgcgccaat acgagttttc acgcttggag cttttgtaca
     3601 ccattacctc caaacggaaa ttgaatcagt tggttgtgga aaaacacgtt tccggctggg
     3661 acgatccgcg tatgccgacc atttccggta tgcgccgacg cggctacacg cccgaagggc
     3721 tgcgcctgtt tgccaaacgc gccggtattt ccaaatctga aaacatcgtc gatatgagcg
     3781 tgttggaagg cgcgattcgc gaagagttgg aaaattccgc cccacgcctg atggcggtgt
     3841 tgaacccgct caaagtgacc ctgaccaact ttgaaaccgg cagaacccaa agccgccgtg
     3901 ccgcgttcca tccgaaccac gaggaaatgg gcgagcgcga agtacctatt tcacaaacca
     3961 tctatattga agccgacgac tttgccgaaa atccgcccaa aggcttcaaa cgcctgattc
     4021 ccggcggcga agtacgcttg cgccacggct atgtcatcaa gtgcgatgaa gtcgtcaaag
     4081 acgaagcagg caatgtggtt gaactcaaat gcagcatcga ccacgacacc ttgggcaaaa
     4141 atccagaagg ccgtaaagtt aaaggcgtga ttcattgggt ttccgccgaa cacgccgccg
     4201 aaatcaaagt ccgtctgtac gaccgcctct ttaccgtcga gcgtcccgat gccgtgcgcg
     4261 gcgaagacgg cgaatacctg ccgttcaccg atttcctcaa tccggaatcc gtcaaggaaa
     4321 tcaccgccta cgccgaacct gccgccaaag atttgccggc agaaagccgt tggcagttcg
     4381 agcgtatcgg ctacttcgta accgaccgta aagaccacgg caaagacacg ccggtgttta
     4441 accgcacggt cacgctgaaa gattcttggc agcctaagta aaaccccatc cttgccgtct
     4501 gaatattgtt cggacggcat ttcccctttg cccgcgaaat gcggcacatt cggcacaccg
     4561 gaaaggaaat atgatgaaag tcctctttat cgccgacccg atggcaagtt tcaaaaccta
     4621 caaagacacc acctacgcca tgatgcgcga gatggcaaaa cgcggttggc ggctgtttca
     4681 taccttgagc ggggaattgt cggttaaaaa cggtctggtg gttgctgatg cgtctgcttt
     4741 tgagtttctc ggcgcacaag acgaccacga caaaaactgg tttgccgccg ccgacaaagt
     4801 tcagacggca ttgaaagcat ttgatgccgt gattatgcgt accgatccgc cgttcgatat
     4861 gcaatacctc tacgccaccc aattactgac gctggcggag cagcagggcg cgaaggtctt
     4921 taacagcgga caggcgatgc gtgatttcaa tgaaaaactg gcgattttga acttcagccg
     4981 ctttaccgcg cccacgctgg taacgacccg ttccgccgat gtccgcgcat ttttgaaaga
     5041 acacggcgac atcatcatta aaccgctcga cggcatgggc ggtatgggca tcttccgcct
     5101 gaccgaaaaa gaccccaaca tcggcagcat cctcgaaacc ctgatgcagc ttgattcccg
     5161 caccattatg gcgcaacgct acattcccga aatcgtacac ggtgacaaac gcatcctgat
     5221 tatcggcggc gaagtcgtcc cctatgcttt ggcgcgtatc ccgcaaaacg gcgaaacacg
     5281 cggcaacctt gcggcaggcg ggcgcggcgt ggcgcaggaa ttgggcggac gcgaccgcga
     5341 aattgccgaa acgctcgccc ccgaactcaa acggcgcggc atcctgctgg ccggtttgga
     5401 cgttatcggc agcaacctga ccgaagtcaa cgtaaccagc ccgaccggat tccaagaaat
     5461 tatgaaacaa aaaggtttcg acgtggcggc aatgtttgcc gatgccgttg ccgcgtggtc
     5521 ggtacgttaa accgatgccg tttgaaaggc ttttgcttca caaccgtttg gtttgatcgg
     5581 gcaggcaggg ttttccctca gccggcagag atacgcttaa tgccgtacgg acacaccgcc
     5641 gccccgtttt cagacggtat atatagtgga ttaacaaaaa tcaggacaag g
//
LOCUS       DAXHNP010000132         5666 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.132, whole genome shotgun sequence.
ACCESSION   DAXHNP010000132 DAXHNP010000000
VERSION     DAXHNP010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5666
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.132"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            73..999
                     /gene="fabD"
                     /locus_tag="ACFM5C_001696"
     CDS             73..999
                     /gene="fabD"
                     /locus_tag="ACFM5C_001696"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFC6069361.1"
                     /translation="MSFAFFFPGQGSQSLGMMNGFAEQAIVKATFDEASAILGQDLWA
                     MINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGA
                     LNFADAVKLVRLRAELMQSAVPQGVGAMAAILGLEDEQVRQICTESAQDEVVEAVNFN
                     SPGQVVIAGNAAAVGRAMTAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVE
                     IKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPG
                     KVLAGLAKRINKTAACSALTDAGQVAAFIEAH"
     gene            1138..3003
                     /gene="msbA"
                     /locus_tag="ACFM5C_001697"
     CDS             1138..3003
                     /gene="msbA"
                     /locus_tag="ACFM5C_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HFC6069362.1"
                     /translation="MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIIAALIAIFGVAA
                     TESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVP
                     LFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLM
                     NMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRY
                     YRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSK
                     KITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKS
                     LANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKA
                     LDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDSIDIADIKLDCLR
                     AQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIG
                     SNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGI
                     IVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA"
     gene            3103..4668
                     /gene="guaA"
                     /locus_tag="ACFM5C_001698"
     CDS             3103..4668
                     /gene="guaA"
                     /locus_tag="ACFM5C_001698"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFC6069363.1"
                     /translation="MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKA
                     FNPKGIILSGGPNSVYESDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVQPGNQRE
                     FGYAQVKTIDSELTRGIQDGEPNTLDVWMSHGDKVSKLPDGFAVIGDTPSCPIAMMEN
                     AEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPSWTMPNYIEEAVAKIREQVGSD
                     EVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVI
                     HVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIES
                     AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHP
                     FPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPV
                     KSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVY
                     DVSGKPPATIEWE"
     gene            4730..5476
                     /gene="fabG"
                     /locus_tag="ACFM5C_001699"
     CDS             4730..5476
                     /gene="fabG"
                     /locus_tag="ACFM5C_001699"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFC6069364.1"
                     /translation="MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESG
                     AAAISERLAQWGGEGRVLNSAEPETVENLIADIEKTFGKLDILVNNAGITRDNLLMRM
                     KEEEWDDIMQVNLKSVFRASKAVLRGMMKQRSGRIINITSVVGVMGNAGQTNYAAAKA
                     GLIGFSKSMVREVGSRGITVNCVAPGFIDTDMTRALPEETRQTFTAQTALGRFGDAQD
                     IADAVLFLASDQAKYITGQTLHVNGGMLMP"
BASE COUNT         1387 a         1820 c         1372 g         1087 t
ORIGIN      
        1 attttgtccc gcctgaattt ttcgtaaaac tcgggcagaa tacctgatta tccaaccaaa
       61 caaaggaata ctatgtcttt tgcattcttc tttcccggac aaggctcaca aagcctaggc
      121 atgatgaacg gctttgccga gcaagccatc gttaaagcca catttgacga agcttccgcc
      181 atattggggc aggacttgtg ggcgatgatt aacggcagcg atgccgaaat catcggtcaa
      241 accgtcaaca cccagcccat tatgctcgcc gccggcgttg ccgtttaccg cgcctatttg
      301 gaagcgggcg gcaaaacgcc tgccgccgtt gccggacaca gcctcggcga atacaccgca
      361 ctcgttgccg ccggcgcatt gaattttgcc gacgcggtca aactcgtgcg cctacgcgcc
      421 gaactgatgc agtccgccgt accgcaaggc gtgggcgcaa tggcggcaat tttgggtttg
      481 gaagatgaac aggtaaggca gatttgcacc gaatccgcac aggatgaagt ggttgaagcc
      541 gtcaacttca actcgcccgg acaagtcgta attgcaggca atgccgccgc cgtcggacgc
      601 gccatgaccg ccgccaaaga agccggtgcc aaacgcgccc tgccgctgcc cgtgtccgta
      661 ccttcccatt gcagcctcat gaaacccgcc gccgacaaac tcgccgaagc cctcaaaacc
      721 gtcgaaatca agcagccgca aatccgcgtc atccacaacg ccgacgttgc cgcctacgat
      781 gatgccgaca aaatcaaaga cgcgctcgtc cgccagcttt acagccccgt acgctggacg
      841 gaaaccgtca acgcccttgt ttcagacggc attgccgaat ccgccgaatg cggaccgggc
      901 aaagtgttgg cgggcttggc aaaacgcatc aacaaaaccg ccgcgtgcag cgcgctgacc
      961 gatgccggac aggttgccgc ctttatcgaa gcgcactgac ttcgttccgc aaaaagcagc
     1021 ctgccctctt caggctgctt ttcacgtccg aacggcaaac agccgcatat ttacgctata
     1081 atccatcccg accaaaccac cgacagcggc tgccgttgca gtttccgccc caccgatatg
     1141 atagaaaaac tgactttcgg actgtttaaa aaagaagacg cgcgcagctt tatgcgcctg
     1201 atggcatacg tccgccccta caaaatccgc atcattgccg ccctgattgc cattttcggc
     1261 gttgccgcca ccgaaagcta ccttgccgcc ttcatcgccc ccctgattaa ccacggcttt
     1321 tccgcacctg ccgcgccgcc cgagctgtct gccgccgccg gcatcatttc caccctgcaa
     1381 aactggcgcg aacagtttac ctatatggtt tgggggacgg aaaacaaaat ctggaccgtc
     1441 ccgctcttcc tcatcatcct cgtcgtcatc cgtggcatct gccgctttac cagcacctat
     1501 ctgatgactt gggtctccgt gatgaccatc agcaaaatcc gcaaagatat gtttgccaaa
     1561 atgctgaccc tttcctcccg ctaccatcag gaaacgccgt ccggcaccgt actgatgaat
     1621 atgctcaacc tgaccgaaca gtcggtcagc aacgccagcg acatcttcac cgtcctcacg
     1681 cgcgacacga tgatcgttac cggcctgacc atcgtcctgc tttacctcaa ctggcagctc
     1741 agcctcatcg tcgtcctgat gttccccctg ctctccctgc tctcgcgcta ctaccgcgac
     1801 cgtctgaaac acgtcatttc cgactcgcaa aaaagcatag gcacgatgaa caacgtgatt
     1861 gccgaaaccc atcagggaca ccgcgtcgtc aagctgttca acgggcaggc gcaggcggca
     1921 aaccggttcg acgcggtcaa ccgcaccatc gtccgcctca gcaaaaaaat cacgcaggca
     1981 acggcggcac attccccgtt cagcgaactg atcgcctcga tcgccctcgc cgtcgtcatc
     2041 ttcatcgccc tgtggcaaag ccaaaacggc tacaccacca tcggcgaatt tatggcattc
     2101 atcgtcgcga tgctgcaaat gtacgccccc atcaaaagcc ttgccaacat cagcatccct
     2161 atgcagacga tgttcctcgc cgccgacggt gtatgtgcat ttctcgacac cccgcccgaa
     2221 caggacaaag gcacgctcgc gccgcagcgt gtcgaagggc gcatcagctt ccgcaacgtc
     2281 gatgtcgaat accgttcaga cggcatcaaa gccctcgacg gcttcaacct cgacatcaga
     2341 caaggcgaac gcgtcgccct ggtcggacgt tccggcagcg gcaaatccac cgtcgtcaac
     2401 ctgctgcccc gctttgtcga accgtctgcc ggcaacatct gcatagacag tatcgacatc
     2461 gccgacatca aactcgactg cctgcgcgcc caattcgccc tcgtctccca agacgtattc
     2521 ctgtttgacg ataccctttt tgaaaacgtc cgatatagcc gtcccgacgc aggcgaagcc
     2581 gaagtcctgt tcgccctcca aaccgccaac ctgcaaagcc tgattgacag ctccccgctc
     2641 ggactgcacc agcccatcgg atcgaacggc agcaacttat ccggcggaca gcggcaacgc
     2701 gtcgccattg cccgcgccat tttgaaagac gcgccgatat tattattgga cgaagccacc
     2761 agcgcattag acaacgaatc cgaacgcctc gtccaacaag cgctcgaacg cctgatggaa
     2821 aaccgcaccg gcatcatcgt cgcccaccgc ctgaccacca tcgaaggggc cgaccgcatc
     2881 atcgtgatgg acgacggcaa aatcatcgaa caaggcacac acgaacaact gatgtcccaa
     2941 aacggctact acacaatgtt acgcaatatc tcaaacaaag atgccgccgt ccggacggca
     3001 taaacaaaat gccgtccgaa atggtacaat cgccccgacc ctttcagacg gcatcatatc
     3061 cgccgaccca tccgattatc ttcaatcact gtaaaaccca ttatgaccca agacaaaatc
     3121 ctcatcctcg acttcggttc tcaagttacc cagctgattg cccgccgcgt gcgcgaagcc
     3181 cacgtttact gcgaactgca ttccttcgat atgcctttgg acgaaatcaa agccttcaac
     3241 cccaaaggca tcatcctctc tggcggcccc aattccgttt acgaatccga ctatcaagcc
     3301 gataccggta tttttgattt gggcattccg gttttgggca tctgttacgg catgcagttt
     3361 atggcgcacc acttgggcgg cgaagtgcag cccggcaacc agcgcgaatt cggttatgcg
     3421 caagttaaaa ccatagacag cgagctgaca cgcggcattc aagatggtga gccaaacaca
     3481 ctcgacgtat ggatgagcca cggcgacaaa gtgtccaaac tgcccgacgg tttcgccgtc
     3541 atcggcgaca cgccgtcctg cccgattgcc atgatggaaa acgccgaaaa acaattctac
     3601 ggcatccaat tccaccccga agttacccac accaaacaag gccgcgccct gttgaaccgc
     3661 tttgtcttgg atatttgcgg cgcgcaacct agctggacga tgccgaacta catcgaagaa
     3721 gccgttgcca aaatccgcga acaggtcggc agcgacgaag tgattttggg tttgtccggc
     3781 ggcgtggact cttccgtagc cgccgcgctg attcaccgcg ccatcggcga ccaactgacc
     3841 tgcgtgttcg tcgatcacgg tttgttgcgc ctgaacgaag gcaaaatggt gatggatatg
     3901 ttcgcccgca acttgggtgt gaaagtgatt cacgtcgatg ccgaagggca gtttatggcg
     3961 aaactcgccg gcgtgaccga tccggagaaa aaacgcaaaa taatcggcgc ggaatttatc
     4021 gaagtatttg atgccgaaga gaaaaaactc accaacgcca aatggctggc gcaaggcacg
     4081 atttaccctg acgtaatcga atccgcaggc gcgaaaacca aaaaagccca cgccatcaaa
     4141 tcgcaccaca acgtcggcgg cctgcctgaa aacatgaagc tcaagctgct tgagccgttg
     4201 cgcgacttat tcaaagacga agtgcgcgaa ctcggcgtcg ctttgggctt gccgcgcgaa
     4261 atggtgtacc gccatccgtt ccccggtccc ggtttgggcg tgcgcatctt gggcgaagtg
     4321 aaaaaagaat acgccgactt attgcgtcaa gcagacgata ttttcatcca agaattacgc
     4381 aatactaccg acgaaaacgg cacatcttgg tacgacctga ccagccaagc cttcgccgtc
     4441 ttcctgcccg taaaatccgt cggcgtaatg ggcgacggac gcacttacga ctacgtcgtc
     4501 gcactgcgcg cagtcatcac cagcgacttc atgaccgcac actgggcaga actgccttac
     4561 tcactgctcg gacgcgtgtc caaccgcatc atcaacgaag tcaaaggcat caaccgcgtg
     4621 gtgtacgatg tcagcggcaa accgcctgcc accatcgagt gggaataacc agcaaacagg
     4681 gctgcaccgt ccggcgcagt ctttcgatta tcggaaaaaa ggaaaaaata tgagcacaca
     4741 agatttaagc ggcaaaatcg ctttggtaac cggcgcatcg cgcggtatcg gtgcagcaat
     4801 tgccgacaca ctggcggcag ccggtgccaa agtcatcggt acggcgacca gtgagagcgg
     4861 tgcggcggcg attagcgagc ggttggcgca atggggcggc gaaggccgcg tattaaattc
     4921 cgccgaaccc gaaaccgtcg aaaacctgat tgccgacatc gaaaaaacgt tcggcaaact
     4981 cgatattctg gtcaacaacg ccggcatcac ccgcgacaac ctcctgatgc gcatgaaaga
     5041 agaagagtgg gacgacatca tgcaggtcaa cctcaaatcc gtgttccgcg cttctaaagc
     5101 cgttttgcgc ggtatgatga aacaacgttc cggccgcatc atcaacatca catccgtcgt
     5161 cggcgtgatg ggcaatgccg gtcaaaccaa ctatgccgcg gcaaaagcag gcttaatcgg
     5221 tttctccaaa tccatggtgc gcgaagtcgg cagccggggc attaccgtca actgcgtcgc
     5281 ccctggcttt atcgataccg acatgacacg cgccctgccg gaagaaaccc gccaaacctt
     5341 taccgcccaa accgccttag gcagattcgg cgacgcgcaa gacatcgccg atgcggttct
     5401 gttcctcgct tccgaccaag caaaatacat caccggccaa acgctgcacg tcaacggcgg
     5461 tatgctgatg ccctgacggg cagccgtacc gacaatgccg tctgaagccc tttcagacgg
     5521 catttgcatt ctcaggcaaa atgaacacac gccacacccc gccctgcccc tgcggatcag
     5581 gcacaagctg agacctttgc aaaactcctt tccctcccga cagccgaaac ccaaacacag
     5641 gttttcggct gttttcgccc caaata
//
LOCUS       DAXHNP010000133         5481 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.133, whole genome shotgun sequence.
ACCESSION   DAXHNP010000133 DAXHNP010000000
VERSION     DAXHNP010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5481
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.133"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            116..637
                     /locus_tag="ACFM5C_001700"
     CDS             116..637
                     /locus_tag="ACFM5C_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NosR"
                     /protein_id="HFC6069365.1"
                     /translation="MSCFSIKRMSAFRARITAFFAAFVFLTAALPAYAERLPDFLAKI
                     QPSEIFPGADRYGKPEGKPMVARVYKGDEQLGLVYITTDAVNTRGYSSKPIDTLMALA
                     KDGTIAGAKLVDHHESIMLIGIPHLPAPGRAIRSNWLPAYIKPNFISTNRLRLKGLPT
                     VLQPSKGTGAGVP"
     gene            526..1725
                     /locus_tag="ACFM5C_001701"
     CDS             526..1725
                     /locus_tag="ACFM5C_001701"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
                     /protein_id="HFC6069366.1"
                     /translation="MASGVYQTKLYIDKPITIEGPADRSATIEGDRSGRTIAVHAPDV
                     TLRNLTVTRSGMSLPAMDAGIYLEETAPHALIEHNNILDNSVGVYLHGSSEAMVRENK
                     IVGDATLRVNERGNGVTVWNAPGAQVVGNDISKGRDGIFSNTSTYNTYKNNRFSDLRF
                     AVHYMYTNDSEISGNISVGNNMGYVLMFSERLKVFDNIAVGSRDQGIMLNYVNYSDIH
                     DNIINKAGKCVFAYNANYDKLFANHFENCQIGIHFTAAIEGTSLHDNSFINNESQVKY
                     VSTRFLDWSEGGHGNYWSDNSAFDLNGDGFGDSAYRPNGIIDQIIWRAPVSRLLMNSP
                     AISIVKWAQAQFPAVLPGGVVDSKPLMKPYAPKIQTRYQAMKDELLKEAETRQSEWGR
                     AENGSLN"
     gene            1783..2397
                     /locus_tag="ACFM5C_001702"
                     /pseudo
     CDS             1783..2397
                     /locus_tag="ACFM5C_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709597.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            2414..2545
                     /locus_tag="ACFM5C_001703"
                     /pseudo
     CDS             2414..2545
                     /locus_tag="ACFM5C_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            2542..3036
                     /locus_tag="ACFM5C_001704"
     CDS             2542..3036
                     /locus_tag="ACFM5C_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HFC6069367.1"
                     /translation="MKKTLLAIVAVSALSACRQAEEGSPPLPRQISDRSVGHYCSMNL
                     TEHNGPKAQIFLNGKPDQPVWFSTIKQMFGYTKLPEEPKGIRVIYVTDMGNVTDWTNP
                     NADTEWMDAKKAFYVIDSGFIGGMGAEDALPFGNKEQAEKFAKDKGGKVVGFDDMPDT
                     YIFK"
     gene            complement(3124..4785)
                     /locus_tag="ACFM5C_001705"
     CDS             complement(3124..4785)
                     /locus_tag="ACFM5C_001705"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HFC6069368.1"
                     /translation="MTESITRDSMQYDVVIVGAGPSGLSAAIKLKQLAEQNGREISVC
                     VVEKGSEAGAHSLAGAVIDPIALNELIPDWKEKGAPLTRTVTQDKVLFLTEKKAFNLP
                     ITPNFDNHGNYIVSLGEVVRWLAEQAENLGVEIYPGFAAAEVLYHEDGSVKGIATGNM
                     GIGKDGEPTDSFQPGMELWAQQTLFAEGCRGSLSKQVIERFQLDQNSQPQTYGLGIKE
                     IWEVPSEKHQPGLVVHSAGWPLDSKTYGGAFVYHFDDNKVAVGFVVGLDYQNPYLSPF
                     EEFQRFKTHPEIRKTFEGGRRIAYGARSLIEGGLQSLPKLSFKGGVLIGDAAGFLNMP
                     RIKGIHTAMKSAMLAAEAVFPLLENLEEVENFDSGKEAADYQQRFEQSWLYQELYAAR
                     NVRPSFKWGVYLGSIYTGIDQMIFRGKAPWTLKHHGKDNEQLKKAAACKPIDYPKPDG
                     VLTFDRLSSVFLANLAHEENQPDHLVLNNPQTMIDVNYKEYASPETRYCPAGVYEIVE
                     ENGNPRLQINAANCVHCKTCDIKDPTQNITWICPEGASGPNYGGM"
     gene            complement(4915..>5481)
                     /locus_tag="ACFM5C_001706"
     CDS             complement(4915..>5481)
                     /locus_tag="ACFM5C_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6069369.1"
                     /translation="PVAYGKIKVQSWKERRDFNIVKQDLDFSCGAASVVTLLNNFYGQ
                     KLTEEDVLKKLDKEQMPASFEDMRRIMPDLGFEAKGYALSFEQLAQLQIPVIVYLKYR
                     KDDHFSVLRGIDGNTVLLADPSLGHVSMSRAQFLDAWQTREGNLAGKILAVVPKGRDA
                     GGDKAFFTRSPKRQTEFAVGQVKWWRAY"
BASE COUNT         1308 a         1478 c         1398 g         1297 t
ORIGIN      
        1 tatcccgtat gcggattggt tttaagattt gtaaatttaa tttgcatcaa aaaatcgccg
       61 atagatgatt catataatat caatattaaa gagtatcggt atatcgggga tagtcatgtc
      121 ctgtttttca atcaaacgta tgtccgcgtt tcgggcgcgg ataacggcgt tttttgccgc
      181 ctttgtcttt ttgacggcgg cactgcccgc ttatgcggag cgtctgcctg attttctggc
      241 gaaaatacag ccttcggaaa tttttccggg tgcggaccgt tacggcaagc cggaaggtaa
      301 gcctatggtt gcccgcgttt acaaaggcga tgagcagttg ggcttggtct atatcacgac
      361 cgatgcggtc aatacgcgcg gttattcgag caaaccgatt gatacgctga tggcgttggc
      421 taaagacggt acgatagccg gagcgaaatt ggttgatcac catgagtcga ttatgctgat
      481 cggtatcccg catttgcccg cgcccgggcg ggcgatacgc tcaaactggc ttccggcgta
      541 tatcaaacca aactttatat cgacaaaccg attacgattg aagggcctgc cgaccgttct
      601 gcaaccatcg aaggggacag gagcgggcgt accatagccg tacacgcgcc ggacgtaacg
      661 ctccgcaacc tgaccgttac ccgttccggc atgagcctgc cagcaatgga tgccggtatt
      721 tatctcgaag aaaccgctcc gcacgccctg attgaacaca ataatatttt ggataattcg
      781 gtcggcgtct atctgcatgg ttcttccgaa gcgatggtgc gcgagaacaa aatcgtcggc
      841 gacgcgactt tgcgcgtgaa cgagcgcggc aacggcgtta ccgtttggaa cgcgcccggt
      901 gcgcaagtcg tcggcaacga catttccaaa gggcgggacg gcattttttc caacaccagc
      961 acatataaca cctacaaaaa caaccgcttc agcgatttgc gtttcgccgt ccactatatg
     1021 tacaccaacg acagcgaaat cagcggcaat atttccgtgg gcaacaatat gggctatgtg
     1081 ctgatgtttt ccgagcggct caaagtattc gacaatatcg ccgtcggcag ccgcgatcag
     1141 ggcattatgc tcaactatgt caactattcc gatattcacg acaacattat caacaaagcg
     1201 ggcaagtgcg tatttgccta taatgccaac tacgataaac ttttcgccaa tcattttgaa
     1261 aactgccaaa tcggcataca ctttaccgcc gccatcgaag gcacgtccct gcacgacaat
     1321 tccttcatca acaacgaaag ccaggtcaaa tacgtcagca cgcgctttct cgactggagc
     1381 gagggcggac acggcaacta ttggagcgac aacagcgcgt tcgatttgaa cggcgacggc
     1441 ttcggcgaca gcgcgtaccg gcccaacggc atcatcgacc aaatcatctg gcgcgcgccc
     1501 gtatcgcgtc tcttgatgaa cagtcccgca atcagcatcg tcaaatgggc gcaggcgcag
     1561 tttcccgccg ttctgcctgg cggcgtggtg gacagcaaac cgctgatgaa gccttatgcc
     1621 cccaaaattc aaacccgtta tcaggcgatg aaggacgagt tgctcaaaga agccgaaacg
     1681 cggcagtcgg aatggggcag ggcggaaaac gggtctttga actagtctgt ttcagacggc
     1741 atccggattc aaatgccgtc tgaaaacaca aaaggaacaa ccatgaccac acatcatgtc
     1801 gaattgagga aggtaaccaa acggttcggg gcgcaaaaag ccgttaacca agtcgatttg
     1861 gttttgaagg caggagaaag cgtcgggctt gccggacaca acggcgcggg caagtccacc
     1921 attatgaagc tgatactcgg gctgattacc ccgaccgaag gcgaagtgat gcttttgggc
     1981 gaacgtaccg gcagcaaagc gggggcgcgg cttcgcagcc aaatcggcta cctgcccgaa
     2041 actgttgcgt tgcacccttc gctgaccggc atcgaaacgc tggattttta tgccaaactt
     2101 aaaaaacagc cgctcacgca gaatcggggg ctgctcgagc gcgtcggcat ttcacaggcg
     2161 gcacaccgcc gcgtcggcac ttattctaaa gggatgcgcc aacgccttgc cttggcacaa
     2221 gccctgctgg gcgagcccaa agtcctgctg tttgacgaac cgacaaccgg cctcgaccct
     2281 gcatcaaggc aaatgtttta cgaagtcgtg cgcgaactca acgggcgcgg cgcgaccgta
     2341 ttgctcagta cccacgccct tgccgagttg gacgggcacg ccgaccgcat tatcgtggat
     2401 taaatttaat ccactatatg cgggtatggc gggtttgagc ggacaaatca gcctgaccgt
     2461 ccccgttttg ctgaccgctc aggttttatg ggttatcatt ccgcttgttt tggcagccgg
     2521 aatttttaga aagcgacaaa tatgaaaaaa accctgttgg caattgttgc cgtttccgcc
     2581 ttaagtgcct gccggcaggc ggaagaggga tcgccgcctt taccccggca gattagcgac
     2641 cgttcggtcg gacactattg cagtatgaac ctgaccgaac acaacggccc caaagcccag
     2701 attttcttga acggcaaacc cgatcagccc gtttggttct ccaccatcaa gcagatgttc
     2761 ggctatacca agctgcccga agagcctaaa ggcatccgcg tgatttacgt taccgatatg
     2821 ggcaatgtta ccgattggac gaatcccaat gccgacacgg agtggatgga tgcgaaaaaa
     2881 gccttttacg tcatcgacag cggctttatc ggcggtatgg gtgcggaaga cgcgctgccg
     2941 ttcggcaaca aagagcaggc tgagaaattt gcaaaggata aaggcggtaa ggttgtcggt
     3001 ttcgacgata tgcctgatac ctatattttc aaataatatt gaaaaaaccg gccgaaactt
     3061 taaaaacgag tttcggtcgg tttttctttt cttgttcggt atagtgtcgg caggaaagaa
     3121 ccttcacatc ccgccgtaat tcggcccgct cgcgccttcg gggcaaatcc aagtgatgtt
     3181 ttgcgtcggg tctttgatat cgcaggtttt gcagtgcacg cagtttgccg cgttgatttg
     3241 caggcgcgga ttgccgtttt cttcaacaat ttcgtacacg ccggccggac aatagcgcgt
     3301 ttcgggcgag gcgtattctt tgtagttcac gtctatcatc gtttgcggat tgttcagcac
     3361 caaatggtcg ggctggtttt cttcgtgcgc gagattggca aggaagacgc tgctcaagcg
     3421 gtcgaaggtc aacacgccgt cgggtttcgg ataatcaatc ggcttgcacg cggcggcttt
     3481 tttgagctgc tcgttgtctt tgccgtgatg tttcaaggtc cacggggctt tgcctctgaa
     3541 aatcatctga tcgatgccgg tgtagattga gccgaggtaa acgccccatt tgaatgacgg
     3601 acggacattg cgcgcggcgt aaagctcttg atacagccag ctttgttcaa aacgttgctg
     3661 ataatccgcc gcctctttgc cgctgtcgaa gttttccact tcttcaaggt tttccaacaa
     3721 ggggaacacg gcttctgcgg cgagcatggc ggatttcatc gcggtatgaa tgcctttgat
     3781 gcgcggcata ttgaggaagc ctgccgcgtc gccgattaaa acgccgcctt tgaacgagag
     3841 cttcggcaaa ctttgcaaac cgccttcaat cagcgaacgc gcgccgtaag cgatgcggcg
     3901 gccgccttca aaggttttgc ggatttcggg atgggttttg aaacgttgga actcttcaaa
     3961 cggcgacaga taagggtttt gatagtccaa accgaccacg aaaccgacgg cgactttgtt
     4021 gtcatcgaaa tggtaaacaa acgcgccgcc gtaggttttg ctgtccagcg gccagcccgc
     4081 gctgtgcacc accaagccgg gctgatgttt ttcagacggc acttcccaaa tttctttgat
     4141 gcccaagccg taagtttgcg gctggctgtt ttggtcgagt tggaaacgtt cgatgacttg
     4201 tttggaaagc gaaccgcgac aaccttcggc aaacagagtt tgctgcgccc aaagctccat
     4261 gccgggctgg aaactgtcgg tcggctcgcc gtctttgcca atgcccatat tgccggttgc
     4321 aatgcctttg accgaaccgt cttcgtgata cagcacttcg gcggcggcaa agcccggata
     4381 aatttccacg cccaaatttt ccgcctgctc cgccaaccag cgcacgactt cgcccaagct
     4441 gacgatgtag ttgccgtgat tgtcgaaatt tggggtaata ggcagattga acgctttttt
     4501 ctcagtcagg aacaacactt tgtcctgcgt taccgtacgc gtcagcggcg cgcctttttc
     4561 tttccagtcg ggaatcaact cattcagcgc aatcggatcg ataaccgcgc ccgccagcga
     4621 atgtgcaccc gcctccgaac ctttctccac cacgcaaacg ctgatttcgc gcccattttg
     4681 ttcggcaagc tgcttgagtt tgatggcggc ggacaaaccc gatgggcctg cgccgacaat
     4741 cacgacatcg tattgcatac tgtcgcgggt gatggattct gtcatggcgg ttcctgtgta
     4801 tttattattg aattgcaaat ccgtaattat acaacgagaa catatagtta ccaaatacaa
     4861 caaaggtcgt ctgaaaacca tattttcggt tttcagacga cctttgtcga aatttcaata
     4921 agcacgccac cattttacct gtccgaccgc aaactccgtc tgacgtttcg gactgcgtgt
     4981 gaaaaacgcc ttatccccgc cggcatccct ccctttcggc acaaccgcca aaatcttacc
     5041 tgccaaattt ccctcacggg tttgccaagc atccaaaaac tgcgccctgc tcattgaaac
     5101 atgacccagc gacgggtcgg caagcaaaac cgtattgccg tctataccgc gcaataccga
     5161 gaaatgatca tccttgcggt atttcagata cacgatgacg gggatttgca actgtgcaag
     5221 ctgctcgaaa gacagggcat agcctttcgc ttcaaaaccc aaatcaggca taatgcgccg
     5281 catatcctca aacgacgcgg gcatctgctc cttatccagt ttttttaaca cgtcctcttc
     5341 cgtcagcttt tgcccgtaaa aattgttcaa aagcgtcacc accgaagccg ccccgcagga
     5401 aaaatccaaa tcctgcttta caatattgaa atcgcgcctt tctttccaac tctgcacttt
     5461 gatttttcca taagcaacag g
//
LOCUS       DAXHNP010000134         5407 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.134, whole genome shotgun sequence.
ACCESSION   DAXHNP010000134 DAXHNP010000000
VERSION     DAXHNP010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5407
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.134"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..841)
                     /gene="mafA"
                     /locus_tag="ACFM5C_001707"
     CDS             complement(<1..841)
                     /gene="mafA"
                     /locus_tag="ACFM5C_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6069370.1"
                     /translation="MQARLLIPILFSVFILSACGTLTGIPSHGGGKRFAVEQELVAAS
                     ARAAVKDMDLQALHGRKVALYIATMGDQGSGSLTGGRYSIDALIRGEYINSPAVRTDY
                     TYPRYETTAETTSGGLTGLTTSLSTLNAPARSRTQSDGSGSRSSLGLNIGGMGDYRNE
                     TLTTNPRDTAFLSHLVQTVFFLRGIDVVSPANADTDVFINIDVFGTIRNRTEMHLYNA
                     ETLKAQTKLEYFAVDRTNKKLLIKPKTNAFEAVYKENYALWMGPYKVSKGIKPTEGLM
                     VDFS"
     gene            complement(1025..1744)
                     /gene="pyrH"
                     /locus_tag="ACFM5C_001708"
     CDS             complement(1025..1744)
                     /gene="pyrH"
                     /locus_tag="ACFM5C_001708"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFC6069371.1"
                     /translation="MTQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVK
                     MGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARV
                     QSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVML
                     KATNVDGVYTADPKKDSSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGI
                     AKEGSLKRVVTGENEGTLVHC"
     gene            complement(1963..2817)
                     /gene="tsf"
                     /locus_tag="ACFM5C_001709"
     CDS             complement(1963..2817)
                     /gene="tsf"
                     /locus_tag="ACFM5C_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFC6069372.1"
                     /translation="MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIK
                     SGAKAGKLAGRTAAEGVLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAE
                     KKPASVEELSELVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVE
                     YKGSEDVARKIGMHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMV
                     EGRIRKFLAEITLNGQAFVMNPDQTVAQFAKENGTEVVSFVRYKVGDGIEKAVVDYAA
                     EVAAAAKV"
     gene            complement(2946..3674)
                     /gene="rpsB"
                     /locus_tag="ACFM5C_001710"
     CDS             complement(2946..3674)
                     /gene="rpsB"
                     /locus_tag="ACFM5C_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFC6069373.1"
                     /translation="MSQITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLE
                     KTLPMFQDAQEAIRRLVANKGTVLFVGTKRQARDIIREEATRAGMPFVDYRWLGGMLT
                     NYKTVKQSIKRLEEKTAALENAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDA
                     IFVIDTGYQKGTLVEAEKLGIPVIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIA
                     DAVLEGKNQALQETVAAAQEAAAE"
     gene            complement(3851..4084)
                     /locus_tag="ACFM5C_001711"
     CDS             complement(3851..4084)
                     /locus_tag="ACFM5C_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069374.1"
                     /translation="MWHIVAIGYLFVAVMYSAAQPSIARALIYLVFWAVLPTVFTVFV
                     VTVRRRNRLMKQQEQAEFEQQRAQRQKDSGTKP"
     gene            4162..4743
                     /locus_tag="ACFM5C_001712"
     CDS             4162..4743
                     /locus_tag="ACFM5C_001712"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFC6069375.1"
                     /translation="MRNEEKRALRRELRGRRSQMGRDVRAAATVKINRLLKRYIKHGR
                     KIGVYWPMGKELRLDGFVRAAQKRGAKLYLPYIEPRSRRMWFTPYPESGMERERIRGR
                     ARLNVPQFAGRKIRVHGLSVLLVPLVGIDREGYRLGQAGGYYDATLAAMKYRLQAKTV
                     GVGFACQLVDRLSVEAHDLPLDGFVSEAGILCF"
     gene            4804..5394
                     /locus_tag="ACFM5C_001713"
     CDS             4804..5394
                     /locus_tag="ACFM5C_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HFC6069376.1"
                     /translation="MSEKIILPVLSLGGVRLEPLDVHHETGLREAVCDGEVWKLGVTS
                     APHPDRVADYIGTALATRLAFAVVDEEAGRVVGTTAYYHFEPQIPRLDIGFTWYAASA
                     RRTRINTCCKIMLLDYAFDVLACRCVGWRTDILNLASQRAIERLGAEKDGVLRMHMLR
                     KDGSVRDTVVYSMLREDWCKNREILTGRLAGYGVQV"
BASE COUNT         1210 a         1232 c         1504 g         1461 t
ORIGIN      
        1 cggagaaatc gaccattaat ccttctgtcg gtttaattcc tttgcttact ttatacggcc
       61 ccatccacaa tgcgtaattt tctttataga cagcttcaaa cgcattggtt tttggtttga
      121 tgagcaattt tttattggtt ctgtctactg cgaaatattc cagttttgtt tgggctttca
      181 gtgtttcggc attgtatagg tgcatttcgg ttctgttgcg tatcgttcca aatacgtcga
      241 tgttaataaa cacatctgta tcggcattgg caggagaaac aacgtctatg ccgcgcagga
      301 aaaatacggt ctgcaccaag tgggaaagaa aggcagtgtc gcgagggtta gtcgtcaagg
      361 tttcatttcg ataatccccc atcccgccaa tatttaagcc cagactgctc ctacttccgc
      421 taccgtctga ttgggtgcgc gagcgtgcag gggcattaag tgtagataaa gaagtggtta
      481 aacctgtcaa accgcctgat gttgtttcag cggtggtttc gtaacgtgga taggtgtaat
      541 cggtacggac ggcagggctg tttatgtatt cgccacgaat cagtgcatca atggagtagc
      601 gacctcctgt caaactgcct gaaccttggt cgcccatagt tgcaatgtac aatgcaactt
      661 ttcgtccgtg taatgcctgt aaatccatgt ctttaacggc agctctggca gaagcggcca
      721 caagttcttg ttcgaccgca aagcgtttac ctccgccatg cgatggaata cctgtcagtg
      781 tcccgcaggc ggataaaata aaaactgaaa aaagaatagg tatcagcagc cgtgcttgca
      841 tagattttct cctttgatga aaaacaaatt gtatcaaaat tgtaaatata gtggattaaa
      901 tttaaaccag tacggcaagg cgaggcaacg ccgtactggt ttaaatttaa tccactataa
      961 tctccatata ataaatggct gtctgaagcc catatgcgac tatatctgcc gacactatgg
     1021 tcaatcagca gtgaaccagc gtaccttcgt tttcaccggt tactacacgt ttgagcgagc
     1081 cttctttagc aatgccgaat actacaatat tgagcttgcg ttcgcggcag agggcgaaag
     1141 cggtggcatc catcactttg aggtttttca acaaggcttc gtcaaaagta atggtttcgt
     1201 agcgcgtggc ggatgagtct tttttggggt ctgcggtgta cacgccgtca acgttggtgg
     1261 ctttgagcat cacgtcgcag ttcatttccg caccgcgcaa tgcggcggca gtgtcggtcg
     1321 tgaagaacgg gttaccggta ccggcggcaa aaatcacgac tttgccttct tccaaatatt
     1381 ggatggcttt aggacgggcg taagtttcag cgatttgctg catagacagt gcggattgta
     1441 cgcgcgcttt gatgcctaaa gtttcaaatg cgtctttgag tgccaacgcg ttcatcacgg
     1501 tcgccatcat gcccatgtag tcggcggtgg cgcgatccat gctgcctgct tgggcggata
     1561 cgccccggaa aatattgccg ccgccgacaa caataccgac ttgcacgccc attttaacga
     1621 cttcggcaat ttcgccgaca gtttgaacga tggtatcgtg attgatgccg aacggatcgg
     1681 aacccatcag ggattcgccg gagagtttca gtaatacgcg tttgtatttg atttgctgtg
     1741 tcatgggata ccttgctttc ttgaatgtcg tcggtcggag tttgggccgt ctgaatttca
     1801 aacggtcgga atattaatga tagggtgtgt cggtttatta ttgttttgtt ttcagacggc
     1861 ctttatattc ggtcgtctta aaataggtac cgtaaacggt tttctcaaaa aaaagcaccc
     1921 tgattcgttt ggaatccagg tgctttcttt ttcataagtg ccttacactt tggcggctgc
     1981 ggctacttcg gctgcgtagt cgacaacggc tttttcgatg ccatcgccta ctttgtagcg
     2041 tacgaagctg accacttcag tgccgttttc tttggcgaat tgggcaacag tttgatcagg
     2101 gttcatcacg aatgcttggc cgttcagagt gatttcagcc aagaatttgc ggatacggcc
     2161 ttcaaccatt ttagcggcga tgtcggcagg tttgccggaa gcgatggctt gttcggtgta
     2221 gatgtggcgt tctttttcaa cggtttcagc atctacttcg gcttcgctta cgcattgtgg
     2281 tttggcggca acaatgtgca taccgatttt gcgtgctacg tcttcagagc ctttgtactc
     2341 aaccaatacg ccttcggtcg ccaatgcgcc gtggatgtag gcaaccagtt ggttggcagt
     2401 gtcgatcact tggaagcgac ggacagacat gttctcgccc aatttggcga tgatggcttt
     2461 gcgttctgct tcaaccagtt cgctcagttc ttcaacagaa gccggttttt tctcggcagc
     2521 agttttcgca acgaagttgg caaattctac gaagcccgcg tctttagcaa cgaagtcggt
     2581 ttcgcagttt acttcaacca atgcgccgac attgccgttg attgcataag ccaatacgcc
     2641 ttcggcagcg gtacggccgg ccagtttacc ggctttcgca ccggatttga tacgcaggat
     2701 ttcttcggct ttgtcgaagt tgccttcggc ttcaaccaag gcttttttgc attccatcat
     2761 gcccaggccg gtagcggcgc gcagatcggc aaccattttt gcagtaattt ctgccatttt
     2821 gaatctccta gatttttggg aaatacggaa aggattttcc gcattcggga atcgtgtgcc
     2881 gcgaacggac gttcagacgg catatttgag aaaaggggca taacgcccct cttcggtttg
     2941 ccagattact cggcagcggc ttcttgggca gcggctacgg tttcttgcag cgcttggttt
     3001 ttgccttcca aaactgcgtc agcgatgccg cggcagtaca ggcggatggc tttggcggag
     3061 tcgtcgttgc cggggatgac gtatttcacg ccgtcagggc tgttgttggt atcgactacg
     3121 gcgataacgg ggatgcccag tttttcagcc tcgaccagag tacctttttg gtagccggta
     3181 tcgataacga aaatcgcgtc gggcaggcct ttcatgtttt tgataccgcc caaagaacgt
     3241 tccagttttt caacatcgcg ttgcatttcc agaatttctt ttttgctgaa accgctttcg
     3301 gcagcatttt ccaaggctgc ggttttttct tccaggcgtt tgatggattg cttaacggtt
     3361 ttgtagttgg tcagcatacc gcccaaccag cggtaatcaa cgaaaggcat accggcgcgg
     3421 gtcgcttctt cgcggatgat gtcgcgggct tggcgtttgg tacctacgaa caatactgta
     3481 cctttgttgg caaccaaacg acgtatggct tcttgcgcgt cttggaacat cggcagggtt
     3541 ttttccaggt tgacgatatg gattttgttg cgcgcaccga aaatgtattg tgccattttc
     3601 gggttccaga aacgggtttg gtggccgaag tggacaccgg cttcaatcat ctgacgcata
     3661 gtaatttgag acattttgat ttccttgaaa gggttaaggg cacacattca atcgcataga
     3721 acttgatagg cgacgcctat tgtcaagcac ccttcggcga aagtgggcat aagttttaaa
     3781 aaataaaaga gtgtttccga aatggaaaac tgacggatta tagcggataa gaggccgtct
     3841 gaaaagggat tcagggtttt gtgccgctgt ctttttgccg ttgtgcacgc tgctgttcga
     3901 attctgcctg ttcctgttgc ttcatcaagc ggttgcggcg gcggacggtt acgacgaaga
     3961 ccgtgaacac ggtgggcagc accgcccaaa aaaccaaata aatcaaggcg cgcgcaatac
     4021 tcggctgcgc ggcggaatac ataacggcaa caaaaagata gccgatggcg acgatgtgcc
     4081 acattgtgtg cgtcctgttt gaatgttaac aaaatcgtta taatcgcaac attctaccgc
     4141 aatcctgaaa ggccgtctga aatgaggaat gaggaaaaac gcgccctgcg ccgcgaattg
     4201 cgcgggcggc gttcgcaaat ggggcgggac gtgcgggcgg cggcaacggt aaaaattaac
     4261 cgcctgctca aacgttatat caagcacggt cggaaaatcg gcgtgtattg gccgatgggc
     4321 aaggaattgc gtttggacgg ctttgtccgc gcggcgcaaa aacgcggcgc aaaactttat
     4381 ctgccttata tcgaaccgcg ttcgcggcgg atgtggttta cgccgtatcc tgaaagcgga
     4441 atggaacggg agcgcatacg gggcagggcg aggttgaacg tgccgcagtt tgcagggcgc
     4501 aaaatccgcg tgcacggttt gtcggtattg ctcgttccgc ttgtcggcat agaccgcgaa
     4561 ggctaccgtt tggggcaggc aggcggctat tacgatgcga cgcttgcagc gatgaaatac
     4621 cgtttgcagg caaaaaccgt gggcgtgggc tttgcctgcc agttggtgga cagactgtcg
     4681 gtcgaggcgc acgacctgcc gctggacggt tttgtgtcgg aggcggggat attgtgtttt
     4741 tagccgttca gacggcattt tgaacggaaa tgccgtctga aggtggaata ttgggagaaa
     4801 aggatgtcgg aaaagataat actgccggtc ttgtcgttgg gtggcgtacg gctcgaaccg
     4861 ttggatgtgc atcatgaaac gggtttgcgc gaggcggttt gcgatgggga agtttggaag
     4921 ctgggagtaa cgtccgcgcc ccatccggat agggtggcag actatatcgg gacagcattg
     4981 gcaacgcgtt tggcgtttgc ggttgtcgat gaagaggcgg gcagggtggt cgggacaacg
     5041 gcgtattatc attttgaacc gcagattccg cgtttggata ttggattcac atggtatgcg
     5101 gcatcggcac ggcggacacg gataaacacc tgttgcaaaa tcatgctgtt ggattacgca
     5161 tttgatgttt tggcttgccg ttgcgtggga tggcgcacgg atattctgaa ccttgcctcg
     5221 caacgtgcca tcgaacggct gggtgcggaa aaagacggcg tgctgcgtat gcatatgctc
     5281 cgtaaagacg gcagtgtgcg cgatacggtc gtgtacagta tgctgaggga agattggtgc
     5341 aaaaacaggg aaatcctgac cggcaggttg gcagggtatg gcgtgcaggt gtgaggcagt
     5401 attttca
//
LOCUS       DAXHNP010000135         5294 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.135, whole genome shotgun sequence.
ACCESSION   DAXHNP010000135 DAXHNP010000000
VERSION     DAXHNP010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5294
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.135"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            1..340
                     /locus_tag="ACFM5C_001714"
                     /pseudo
     CDS             1..340
                     /locus_tag="ACFM5C_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698053.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(361..1587)
                     /locus_tag="ACFM5C_001715"
     CDS             complement(361..1587)
                     /locus_tag="ACFM5C_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HFC6069377.1"
                     /translation="MTFLQRLQGLADNKICAFAWFVVRRFDEERVPQAAASMTFTTLL
                     ALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFREQANRLTA
                     IGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQFLVYWALLTFGPLSLGVGISFM
                     VGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPARQAFVGALATA
                     FCLETARSLFTWYMGNFDGYRSIYGAFAAVPFFLLWLNLLWTLVLGGAVLTSSLSYWQ
                     GEAFRRGFDSRGRFDDVLKILLLLDAAQKEGKALPVQEFRRHINMGYDELGELLEKLA
                     RYGYIYSGRQGWVLKTGADSIELNELFKLFVYRPLPVERDHVNQAVDAVMMPCLQTLN
                     MTLAEFDAQAKKQQQS"
     gene            1742..1928
                     /locus_tag="ACFM5C_001716"
                     /pseudo
     CDS             1742..1928
                     /locus_tag="ACFM5C_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779592.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
     gene            2132..2791
                     /gene="queC"
                     /locus_tag="ACFM5C_001717"
     CDS             2132..2791
                     /gene="queC"
                     /locus_tag="ACFM5C_001717"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFC6069378.1"
                     /translation="MSNQQALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYGQRHA
                     VELERARWIAQDLGIKQTVLDLSLMRQITHNALMDDTAAIETAGNGVPNTFVDGRNAL
                     FLLYAAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPL
                     MYLTKAQTWALADEMGALDYIREQTHTCYNGIVGGCRECPSCILRERGLAEYLESKKA
                     V"
     gene            2819..3334
                     /locus_tag="ACFM5C_001718"
     CDS             2819..3334
                     /locus_tag="ACFM5C_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HFC6069379.1"
                     /translation="MPKLHMFYLGGNAGRSNIEVHDIQFAVCDDYREAIPALKAAWFG
                     DADKIHIDGWQVVEWADGYDIAVSEMPKTEMPSEHAPRLYFANVGGYRAGQLAEAHAF
                     GLFTAATPAEAKQKALQTLLTDHVQQHKDNLKDVDNLLALDRIGNFHIRLTPNPHGKP
                     AEIGFQGYLPI"
     gene            3341..3763
                     /gene="queD"
                     /locus_tag="ACFM5C_001719"
     CDS             3341..3763
                     /gene="queD"
                     /locus_tag="ACFM5C_001719"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HFC6069380.1"
                     /translation="MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDDLVRGG
                     PKDGMVMDFTDLKAIVKQHITDPFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRT
                     TAENMAVEMYDRLKNAGLNVCRVKLWETPTSCAEYEGE"
     gene            4032..4403
                     /locus_tag="ACFM5C_001720"
     CDS             4032..4403
                     /locus_tag="ACFM5C_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HFC6069381.1"
                     /translation="MKLLSTLLVLLVTAEHFYIAWLEMTQIPSEKAAEIFKLPYEFME
                     QKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGATVLFLGFVLIAAAWGAFSSGN
                     KGILVKQGLPAFLAAAAVLAV"
     gene            4400..5038
                     /locus_tag="ACFM5C_001721"
     CDS             4400..5038
                     /locus_tag="ACFM5C_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFC6069382.1"
                     /translation="MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLA
                     CGWCDTDYLTFGMMSLSDILGRLKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFL
                     CIETNGLNPAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERK
                     IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE"
BASE COUNT         1354 a         1535 c         1318 g         1087 t
ORIGIN      
        1 tgttttttcg atacggaacc ggatagagga aaaatcgaac attgcgcctg ccttgctatg
       61 attcacgaag aaatctccgc catgcctatg ggctatgaaa ccttgatcgg cgatatgggc
      121 agcgcactgt caggcggaca aaaacaacgc atcgtattgg cgcgggcctt aatattgcga
      181 accgaaaatc ctatttttag atgcagcgac cagccatttg gatattgcca atgaaaaagc
      241 agtcaatgca aacttgaatg gcttgtctat cataaaaatt atggcggcac acagaaagga
      301 aacggtggaa tcagcagata ggaaaatgtc tttaggataa aaatacagtt tcaaaaatac
      361 tcaagattgc tgctgttttt tcgcctgagc gtcaaactct gccagcgtca tgttcaaagt
      421 ctgcaaacac ggcatcatta ctgcatcgac agcttggttc acatgatccc tttccacagg
      481 caacggacgg taaacgaaga gcttgaagag ttcgttcaac tcaatcgaat ccgcccccgt
      541 tttcaacacc caaccctgtc tgccggaata gatatagccg taccgcgcca gcttttccaa
      601 aagctcgccc aactcgtcgt agcccatatt gatatgccgt ctgaactcct gaacaggcaa
      661 ggctttgcct tctttttgcg ccgcatccag aagcagcagg attttcaaca cgtcgtcaaa
      721 ccgtccgcgc gagtcgaagc ccctgcggaa cgcttctccc tgccagtagg agagtgaaga
      781 agtcagcacc gcgccgccca agaccagcgt ccacaacagg ttcagccaca acagaaaaaa
      841 cggcacggcg gcaaacgcgc cgtaaatcga gcggtagccg tcgaaattgc ccatatacca
      901 agtgaagagg gagcgcgcgg tttccagaca aaacgctgtt gccaaagccc cgacaaacgc
      961 ctgccgcgcg ggaacgaagc ggtttggcac gaagcggtac agcccccaca gcaaaagcgt
     1021 catgaaggtc agcgtcgccg ccgttcgcaa cgcgcccgac cactgcggcg cacctgaggc
     1081 aagcgcggca tcctgtaccg agccgaccat aaaggaaatg cccacgccca aagacagcgg
     1141 cccgaacgtc agtaaagccc aatagacgag aaactgcatc atccacggac gctgggaatt
     1201 gacccgccag atgcggttga acgtattgtc tatcgtccga atcagcatca gcgaggtaac
     1261 gaccagcatc acgctgccga ttgccgtcag ccggttcgcc tgctcgcgga acgcattgat
     1321 atagtcgaac accatgtccg cgccctgcgg cacaatggtt tggttgacga aggagacgaa
     1381 cgaatccgac cagcggtcga acacggggaa aatcgaagcg accgccacca tcacggtcag
     1441 cacggggacg agtgccagca gcgtcgtaaa cgtcatgctt gccgccgcct gcggtacgcg
     1501 ttcttcatca aagcggcgga cgacgaacca tgcaaacgca cagattttat tgtctgccaa
     1561 accttgcaaa cgttgtaaaa aggtcataat ttcttgcccg gtcagtaagt tgggcattga
     1621 tgcccgatgt tatagccaag tttgccgtca ggaacaaatg cctgaactgc ggctgtttca
     1681 gacggcatcg gaacaactgt tatgccgttt gaagaccgaa ccattttaac ggaatccgcc
     1741 catgaaccca aatccccctc aaaatcctcg tcctctacta ttcccaaaac ggcagccccc
     1801 gcaatcccgc ccgccgaatc gctcgcggca tcgacagcgt tgaaggttgc gaagccgtat
     1861 tgcgcaccgt ccccaaagtc tccgccgtct gcgaagccgt caaaaaagat attcccgaca
     1921 gcggctcccg tcctgaccgc cgaagaaaac aatatcgcct tcgcacaaag caaacgcttg
     1981 gcggaactcg ccgtcaagtc ggcataagcc gcgtgttcag acggcatggc gttcagatgc
     2041 cgtctgaacg cgtttgcctg tataatccgc atctttactg ttcaacttcg cggttcgcaa
     2101 acctcccgcg ttaccaaaac taggattcga tatgtcaaac caacaagcct tggtcatctt
     2161 ttcgggcggt caggattcga ccacctgcct gattcaggca atccaaacct acgggcgcga
     2221 aaacgtccaa gccatcactt tccaatacgg gcaacgccat gccgtcgagc tggaacgcgc
     2281 ccgctggatt gcgcaggatt tgggcatcaa acaaaccgta ctcgacttga gcctgatgcg
     2341 gcagattacg cacaatgccc tgatggacga taccgccgcc atcgaaaccg ccggcaacgg
     2401 tgttcccaat acctttgtgg acgggcgcaa cgcgcttttc ctgctttacg ccgcgattta
     2461 cgccaaaggg caggggatac ggcacatcat cgcgggcgtg tgcgaaaccg acttctccgg
     2521 ctatcccgac tgccgcgacg tgtttgtcaa atcgatgaac gttaccctta atttggcgat
     2581 ggactatgat tttcaaatcc acacgccgct gatgtatctg accaaggcgc aaacttgggc
     2641 gttggcggac gaaatgggcg cgctggacta tatccgcgag caaacccaca cctgctataa
     2701 cggcatcgtc ggcggctgcc gcgaatgccc gagctgtatc ttgcgcgaac gcgggctggc
     2761 ggaatatctg gaaagtaaaa aggccgtctg aacacgcgca aaccataagg aatacgatat
     2821 gcccaagctc catatgtttt acctcggcgg caatgccggc aggtcgaata tcgaagtgca
     2881 cgacatccaa tttgccgtgt gcgacgacta ccgcgaagcc atccccgcac tcaaagccgc
     2941 atggttcggc gatgcggaca aaatccacat cgacggttgg caggttgtcg aatgggcgga
     3001 cggttacgac atcgccgtat ccgaaatgcc caaaacggaa atgccgtctg aacacgcccc
     3061 gcgcctgtat tttgccaatg tcggcggtta tcgcgcgggg cagcttgccg aggcgcacgc
     3121 gttcgggctg ttcaccgccg ccacgcctgc cgaagccaaa caaaaagccc tgcaaaccct
     3181 gttgaccgac catgttcagc aacataaaga caacttaaaa gacgtggaca acctgcttgc
     3241 gctcgaccgc atcggcaatt tccatatccg cctgaccccg aatccgcacg gcaaacccgc
     3301 cgaaatcggc tttcaaggct atttgcccat ttgagaaccc atgaaaatca ccaaaatctt
     3361 caccttcgac tcctctcata tgctcgacgg gcatgacggc aaatgccaaa acctgcacgg
     3421 gcatacctac aaactcgaaa tcaccgtttc agacgacctc gtcagaggcg ggccgaaaga
     3481 cggtatggtg atggacttta ccgacttgaa agccattgtc aaacaacaca ttaccgaccc
     3541 cttcgaccac gccttcatct accacggcgg caacgggcgc gaatctcaaa tcgccgcact
     3601 cttggaaggc tggaacatga aaaccctgcg cctgccctgc cgcaccactg ccgaaaatat
     3661 ggcggtcgaa atgtacgacc gtctgaaaaa cgcggggctg aacgtgtgcc gcgtcaaatt
     3721 gtgggaaacg ccgacatcgt gtgcggagta tgaaggggag tagggaatat cttgaacgta
     3781 tcgatatagt aaattccaat aagacatgcc caaccgcgtc attcccgcgc aggcgggaat
     3841 ccagaccttg gtttttcagg aatatttaaa aattgcagca attccaaatc tttggattcc
     3901 cgcctgcgcg gaaaggacgg tttagagcgt ccttatttga atttaccgta aaacggtttt
     3961 ttctcctgta cggattcccc gttttttcag acgaccctcc atatcaaata cacccattaa
     4021 aaggaatacc catgaaactt ctctccaccc tcttagtcct ccttgtcacc gccgaacatt
     4081 tctacatcgc ctggcttgaa atgacgcaga ttcccagcga aaaagcggcg gaaatattca
     4141 agctgcctta tgaatttatg gaacaaaagc gcgtgcagac cctgttcggc aaccaagggc
     4201 tgtataacgg ctttctcggc atcgggctgg tgtggtcgcg gtttgccgct ccggataacg
     4261 cggtgtacgg cgcaacggta ctgtttctcg gcttcgtcct gattgccgcc gcgtggggcg
     4321 cgttctcttc cggcaacaaa ggcatactcg tcaaacaagg tttgcccgca tttttggcag
     4381 cggcggcggt gttggcggta tgaaaaaaat caatgttgcc cccgaaaatc cccaataccg
     4441 catcgtcgaa atctttgaaa gcctgcaagg cgaaggctgg aacacgggca tgcccgccgt
     4501 tttcgtccgc ttgggcaaat gcaacctcgc ctgcggctgg tgtgataccg attatttgac
     4561 attcggcatg atgagcctgt ccgacatctt aggccgtctg aaagcctatg ccgcccgcaa
     4621 catcatcatc accggcggcg aaccgaccat ccagccgcat ctcgatatgc tgctggacat
     4681 gctcaaggcg gaaggttatt tcctctgtat cgaaaccaac ggactcaatc ccgcgccgcc
     4741 gcaaatcgac tatgtcgcca ccagccccaa agcctgctac gccgccaaat atgaaaatag
     4801 ctgtatcgaa acagccgacg aagtgcggat tgttgccgat ggtgatgtcc ttgcgttctg
     4861 cgaaaacatg gaacgtaaaa tccgcgcgca tcattactac ctttcgccct gcgaacaaga
     4921 cggtgcgatg aacatctacg acaccatccg ccaaatcggt attttaaaca gtcgccccga
     4981 cgcgccggtg cattggcagt tgagcgtgca gacgcacaaa tgggcgggaa tagagtagtt
     5041 taagcagtgt aactcaaagg gccggcgtac cgttttgccg atgtctaaca tatgggaaaa
     5101 gtgtgccgct tccgcgtgaa actgcccaca tttccgctgc ctgattgagg cggaacctta
     5161 ctgaataaga tgccgccgtt gggtacaagc ccggcttcct aaattccgat ggtcttttga
     5221 accttgccga tactctgtgc cagtgcgcgc aaatggcagg gttagggaaa acgaaatgcc
     5281 gtctgaaaca gcat
//
LOCUS       DAXHNP010000136         5266 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.136, whole genome shotgun sequence.
ACCESSION   DAXHNP010000136 DAXHNP010000000
VERSION     DAXHNP010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5266
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.136"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            116..811
                     /gene="pgl"
                     /locus_tag="ACFM5C_001722"
     CDS             116..811
                     /gene="pgl"
                     /locus_tag="ACFM5C_001722"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HFC6069383.1"
                     /translation="MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRS
                     PIAFFNALSQKDLDWKNVGITLADERIVPTVHADSNTGLVREYLLKNKAEAAMWIPMV
                     EDGKTETELHPDAVVDYALKHYKQPDVLVLGMGNDGHTASIFPKAPQFQTAIDGSAGV
                     ALVHTTPVTAPHERVSMTLDAIAHTGHVFLAIRGEEKKAVFDQAAQGENREYPINLVL
                     NHQGVNCHVFYAE"
     gene            792..1778
                     /locus_tag="ACFM5C_001723"
     CDS             792..1778
                     /locus_tag="ACFM5C_001723"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - D-glucose binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HFC6069384.1"
                     /translation="MSSTPNKQAGYPRLVADIGGTNARFALETAPRVIEKAAVLPCKD
                     YDTVTDAVRAYLNQSGATAVRHAAFAIANPILGDWVQMTNHHWAFSIETTRQTLGLDT
                     LILLNDFTAQALAVTQTSSKDLMQVGGQKPVEFAPKAVIGPGTGLGVSGLVHSHAGWV
                     ALAGEGGHTSFPPFDDMEVLIWQYAKNKYGHVSAERFLSGAGLSLVYEALAAKQKAKP
                     AKLMPSEITEKALSGASPLCRQTLDIFCAMLGTVASNLALTLGARGGVYLCGGIIPRV
                     LEYFKTSPFRSRFENKGRFEAYLAAIPVYVVLSEFPGISGAAAALDNHLRNV"
     gene            1828..2676
                     /gene="hexR"
                     /locus_tag="ACFM5C_001724"
     CDS             1828..2676
                     /gene="hexR"
                     /locus_tag="ACFM5C_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HFC6069385.1"
                     /translation="MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASV
                     SQPTVIRFCRSLGYKGLPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAA
                     ASLLGERRFLKESELENAIATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYV
                     DTHTQLMAASVLSDQDVLVAISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLA
                     DCVLSVATQENAELYTPMVSRLLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH
                     IDYDKD"
     gene            2797..4443
                     /gene="pgi"
                     /locus_tag="ACFM5C_001725"
     CDS             2797..4443
                     /gene="pgi"
                     /locus_tag="ACFM5C_001725"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6069386.1"
                     /translation="MKHLHDLPAWSKLWNHFDDSKTLHMREMFEQDPQRAERYWLQVG
                     GLTLDYSKNRINDETMSLLFELAREAGVPERMRQMFHGEKINTTENRAVLHVALRNRT
                     NSPIVVDGEDVMPKVNRVLQRMGEFAHEVRSGSWLGYTNQVITDVVNIGIGGSDLGPL
                     MMCTALKPFGHPRLNMHFVSNVDGSQLRDVLSKVHPETTLFIIASKTFTTQETLTNAL
                     TAREWFLNHAGDEEAVAKHFAAVSTNQKAVAEFGIDTANMFEFWDWVGGRYSLWSAIG
                     LPIMLYLGEENFIEMLNGAHLMDQHFINTPLERNLPVILALIGIWYINYYGGGSHVIA
                     PYDQHLHRLPKFIQQLDMESNGKQVTLDGKAVGHETSPIIWGETGINGQHAFFQLLHQ
                     GTHITPIDLIASLEKRSNLPGHHEILLANVFAQAEAFMRGKTPDEVRAELKAQGMDEA
                     RIEELVPHKTFSGNRPTNLILMDKVNPRNMGSLIAMYEHKTFVQGIIWGINSFDQWGV
                     ELGKQLAKTILGELTGETEPQKHDSSTERLINLYLQTNRK"
     gene            4457..5008
                     /locus_tag="ACFM5C_001726"
     CDS             4457..5008
                     /locus_tag="ACFM5C_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6069387.1"
                     /translation="MPSERRPFQTAFLSNRKTVGKLAERVQSRYDGLHKFKHICSAAM
                     ALIKEPLDKAKQRNEELEAAEEAAAQEALGREQEVDRVSEWEERYKLSRSEFEQFWKG
                     LPQTIQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKFSELACKTAETEARLEELH
                     NRKKALIDEMAREADKKELPKRL"
BASE COUNT         1343 a         1469 c         1391 g         1063 t
ORIGIN      
        1 aaaaaagcag tcccgatatt tggtatcaaa agcataaaca actgttcggc cgacatattg
       61 ctcaacccgt ttccataacg gaatatgccg tctgaaataa aaaaaggaca caaatatgtt
      121 tgtttggcac gaatacgaaa atgcggcaga agcggcgcag tctttggctg acgcagtggc
      181 ggatgctttg cagggcgcac tggacgagaa gggcggtgcg gtgttggcag tttccggcgg
      241 acgttcgccg attgcatttt tcaacgccct gtcgcaaaaa gatttggatt ggaaaaacgt
      301 cggcatcacc ttggcagatg aacgcatcgt gccgaccgtc cacgccgaca gcaataccgg
      361 tttggtgcgc gaatacctgt tgaagaacaa agcggaagcg gcaatgtgga ttcctatggt
      421 ggaagacgga aaaactgaaa ccgaattaca tcccgatgct gttgtcgatt atgcactgaa
      481 acattacaaa cagcccgatg ttttggtttt gggtatggga aacgacgggc atacggcttc
      541 gattttcccg aaagctccgc agtttcagac ggcaatcgac ggttcggcag gtgtcgcgct
      601 ggtgcatacc acgcccgtta ccgcgccgca cgagcgcgtc agtatgacct tggatgcgat
      661 tgcccatacg gggcatgtgt ttttggcgat acggggcgaa gagaaaaaag ccgtgttcga
      721 ccaagccgca caaggcgaaa accgcgaata tccgatcaac ctcgttttga accatcaagg
      781 agtgaactgc catgtcttct acgccgaata aacaagccgg atatccccga ctggtcgccg
      841 atatcggcgg gacgaatgca cgctttgcgc tggaaaccgc gccgcgcgtc attgaaaaag
      901 ccgccgtgct tccgtgtaaa gactacgata cggttaccga tgcggtgcgt gcctatctga
      961 atcaaagcgg tgcaacagcc gtacggcacg cggcatttgc catcgccaac ccgattttgg
     1021 gcgactgggt gcagatgacc aaccaccatt gggcgttttc catcgaaacc acccgtcaga
     1081 ctttggggct ggacaccctc atccttttga acgactttac cgcgcaggca ttggcggtaa
     1141 cgcagacttc aagcaaagac ctgatgcagg taggcgggca aaagcctgtc gaatttgccc
     1201 ccaaagccgt tatcggcccc ggtaccggcc tgggcgtgag cggattggtg cacagccacg
     1261 caggctgggt ggctttggcg ggcgagggcg ggcataccag tttcccgccg tttgacgata
     1321 tggaagtgct gatttggcag tacgccaaaa acaaatacgg ccatgtttcc gccgaacgct
     1381 ttttgagcgg cgcgggcttg agcttggttt acgaggcttt ggctgcaaaa cagaaagcca
     1441 aacccgccaa actgatgccg tctgaaatca cggaaaaggc tttgagcggc gcgtcgcctt
     1501 tgtgccgtca gactttggac atcttctgcg ccatgctcgg cacggttgct tccaacctcg
     1561 ccctgacgct gggcgcgcgc ggcggcgtgt acctgtgcgg cggcattatt ccccgcgtgt
     1621 tggaatattt caaaacttcc ccgttccgca gccgtttcga gaacaagggc aggtttgaag
     1681 catatcttgc cgcgattccc gtgtatgtcg tcttgagcga gtttcccgga atttccggtg
     1741 cggctgcggc tctcgacaac catttgagaa acgtttaacc acagcggctc cttgcagcgg
     1801 ggctgcatta tcgaagggca tatcattatg ttaagcaaaa tcagcgaatc actggcaaac
     1861 ctttccggtg cggaacgcaa agtcgccgaa tgtgcattgg cggaacccaa atggttcgtc
     1921 catgccgccg ttgccgaaat tgccgaacgt gcgtccgtca gccagccgac cgtcatccga
     1981 ttctgccgca gcttgggtta taaagggctg cccgagttca agctcgcctt gtccgccagc
     2041 atcggtcatg agggtatgcc ctatgtccac gaagaactca acgccgacga cgatatggca
     2101 agcgtggtcg agaaagtgtt gggcaatgcc gccgcctcgc tgttgggcga acgccgcttc
     2161 ctgaaagagt cggagctgga aaacgccatt gccacgctga tgcacgcccg tcgcgtcgag
     2221 ttttacggtg tcggcaattc cggcattgtg gcacaggacg cgcagcataa atttttccgt
     2281 ttcggcatgt ccaccgtcgc ctatgtcgat acgcacacgc agctgatggc ggcatctgtt
     2341 ttgagcgatc aggatgtttt ggttgccatt tccaacacgg gttcgtctat cgaacttttg
     2401 gatgcggtca gcatcgccaa agaaaacggc gcgtctgtca tcgcactgac ccgcaacgat
     2461 tcgcctctgg cgcaacttgc cgactgcgtg ttgagcgttg ccacacagga aaatgccgaa
     2521 ctctacacgc ccatggtttc ccgcctcttg cagcttgccg tcatcgacat tctcgccatc
     2581 ggacttgccc tgcgcttggg cgatgctgcc agcctgcaat tgcagaaaag caaaaaaagc
     2641 atacacaaca agcacatcga ttacgacaaa gattgacctt cagacggcat cccacaaatg
     2701 ccgtctgaaa tgccgaacaa cggtcgtcgg cggcttgcgg cagtttccgg cagccttttc
     2761 atcccacaac aaaaaacctc attcaggagc atatagatga aacaccttca cgacttaccc
     2821 gcatggtcga aattgtggaa ccactttgac gacagcaaaa cattgcatat gcgcgaaatg
     2881 ttcgagcaag acccgcagcg tgcggaacgc tactggctgc aagtcggcgg actgacgctg
     2941 gactactcca aaaaccgcat caacgacgaa accatgtcgc ttttgttcga gcttgcccga
     3001 gaagcaggcg tgccggagcg gatgcggcag atgttccacg gcgaaaaaat caataccacc
     3061 gaaaaccgcg ccgtcctgca tgtcgccctt cgcaaccgca ccaattcgcc gattgtggtt
     3121 gacggtgaag atgtgatgcc caaagtcaac cgcgttttgc aacgtatggg cgaatttgca
     3181 cacgaagtcc gcagcggaag ctggctgggc tataccaacc aagtcattac cgacgttgtc
     3241 aacatcggca tcggcggatc ggatttgggc ccgctgatga tgtgtaccgc gctcaaacct
     3301 ttcggtcatc cgcgcctcaa tatgcacttc gtctccaacg tggacggctc gcaactgcgc
     3361 gacgtattgt ccaaagtcca ccccgaaacc acgctgttca tcatcgcctc caaaacattt
     3421 accacgcagg aaacgctgac caacgcgctg accgcgcgcg aatggttttt gaatcatgcg
     3481 ggcgacgaag aagccgttgc caaacacttc gccgccgttt ccaccaatca aaaagccgtc
     3541 gccgaattcg gcatcgacac cgccaatatg tttgaatttt gggattgggt cggcggtcgg
     3601 tacagcctgt ggtccgccat cggattgccg attatgctgt atctcggcga agaaaacttc
     3661 attgaaatgc tcaacggcgc gcacctgatg gaccaacact tcatcaacac accgctcgag
     3721 cgcaacctgc ccgtcattct cgccctcatc ggcatctggt atatcaacta ctacggcggc
     3781 ggcagccacg tcatcgcgcc ttacgaccaa catttgcacc gcctgcccaa attcatccag
     3841 cagctcgata tggaaagcaa cggcaaacag gttacgttgg acggcaaagc agtcggacac
     3901 gaaacctcgc cgattatctg gggcgaaacg ggcattaacg gccagcacgc cttcttccaa
     3961 ctgctgcacc aaggcacgca cattaccccc atcgacctga ttgcctcgct tgaaaaacgc
     4021 agcaacctgc ccggacacca cgaaatcctg cttgccaacg tcttcgccca agcagaagcc
     4081 tttatgcgcg gcaaaacccc cgacgaagtc cgcgccgaac tcaaagcgca gggtatggat
     4141 gaggcgcgca tcgaagagct ggtcccgcac aaaaccttct ccggcaaccg cccgaccaac
     4201 ctcattctca tggacaaggt caacccgcgc aatatgggca gcctgattgc catgtacgaa
     4261 cacaaaacct tcgtacaagg catcatttgg ggcatcaaca gcttcgacca gtggggcgtg
     4321 gaactcggca aacaactggc taaaaccatt ttgggcgaac tgaccggcga aaccgagccg
     4381 caaaagcacg acagttcgac cgaacgcctg atcaacctct acctgcagac caaccgcaaa
     4441 taaaacctgc ggaaaaatgc cgtctgaacg ccgaccgttt cagacggcat ttttatcgaa
     4501 caggaaaacc gtcggtaaac ttgcagagcg tgtgcaatcc cgatatgatg gtttgcataa
     4561 atttaaacat atatgttccg cagctatggc actgattaaa gagccgttgg acaaagcgaa
     4621 acaaaggaac gaagaacttg aagcggcaga agaagcggcg gcgcaggagg cattgggtcg
     4681 ggagcaggaa gtcgaccgcg tatccgaatg ggaagaacgc tacaagctgt cgcgcagcga
     4741 gttcgagcaa ttctggaaag gattgcctca aaccatacag aataagctgc aagcctcaca
     4801 gaaaacatgg aaaagcggga tggataaaat ctgtgccaac aatgcgaaag ctgaaggtga
     4861 aacgccaaac ggcataaaat tcagcgaact ggcatgcaaa acggcggaaa ccgaagcacg
     4921 cttggaagag ctgcacaacc gtaaaaaagc ccttatcgac gaaatggcca gggaagcgga
     4981 caagaaagaa ctgccaaagc ggctctgaac agcgcggttc aggcactgcc cgccgatatt
     5041 gccgaaaccg tcatgcccga gtaccgcaac tgacaaaacg gtttgaatgc caaatgcgcc
     5101 gacggcgacg aatacggcgt ggcacaatct gactgccgta ccagagaaat caatgcgaaa
     5161 accaaagaaa tccaaggtta tctgattgac tgaaacttgg atgcgggaat gtcggcggct
     5221 tttgcgtttt tgtcgttttt atagtgaatt aaatttaaac cgatac
//
LOCUS       DAXHNP010000137         5254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.137, whole genome shotgun sequence.
ACCESSION   DAXHNP010000137 DAXHNP010000000
VERSION     DAXHNP010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.137"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(107..523)
                     /gene="dksA"
                     /locus_tag="ACFM5C_001727"
     CDS             complement(107..523)
                     /gene="dksA"
                     /locus_tag="ACFM5C_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HFC6069388.1"
                     /translation="MAKLTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENAS
                     ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
                     DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
     gene            complement(670..1479)
                     /gene="proC"
                     /locus_tag="ACFM5C_001728"
     CDS             complement(670..1479)
                     /gene="proC"
                     /locus_tag="ACFM5C_001728"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFC6069389.1"
                     /translation="MNRVEIMNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE
                     RLEKELGVETSATLPELHSDDVLILAVKPQDMEAACKNICTNGALVLSVAAGLSVGTL
                     SRYLGGSRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLEDE
                     AQMHSITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVTLAEQTGE
                     DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ"
     gene            complement(1510..1918)
                     /locus_tag="ACFM5C_001729"
                     /pseudo
     CDS             complement(1510..1918)
                     /locus_tag="ACFM5C_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
     gene            complement(1918..2604)
                     /locus_tag="ACFM5C_001730"
     CDS             complement(1918..2604)
                     /locus_tag="ACFM5C_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFC6069390.1"
                     /translation="MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIR
                     EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVC
                     RLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRG
                     LMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVR
                     IGSAIFGKRG"
     gene            2723..3766
                     /gene="pilT"
                     /locus_tag="ACFM5C_001731"
     CDS             2723..3766
                     /gene="pilT"
                     /locus_tag="ACFM5C_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HFC6069391.1"
                     /translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
                     EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPST
                     VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
                     PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
                     ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
                     RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
                     ARRRAQNSESMSF"
     gene            3929..5155
                     /locus_tag="ACFM5C_001732"
     CDS             3929..5155
                     /locus_tag="ACFM5C_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6069392.1"
                     /translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
                     TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
                     GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
                     LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
                     INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
                     LNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGD
                     LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
                     TPELLYDRVNGLNLIS"
BASE COUNT         1297 a         1641 c         1182 g         1134 t
ORIGIN      
        1 ctgcgccgcc tccaacaatc ccttcctccc cctcctctga ccggtgcgcc tttgtgaata
       61 tgccgtctga aacttgggga ttcatacggc attttgtttg ccgccatcag tcggcaaact
      121 gttttttcat cctctctcgg cgttcttggg actcaacaga taaagtggct gtcgggcgtg
      181 ccagcagccg cttcagaccg ataggctctc ccgtatcggc acagaatcca taatcccctt
      241 catcaatatt gcggatggtc gcctgtattt tactgagaag ttttcgttcc cgatcgcggg
      301 tacggagttc caatgcgtac tcttcttcct gtgtggcacg gtcggcagga tcgggggctg
      361 attcgtgttc ttggagatgc cctgtcgtag cggaagcatt ttcgatgagt tcgtcttgca
      421 tttttaccag caattcgcgg aaaaaagcca aatggtcgtc attcatataa tcgtcttccg
      481 gcccgctcca attcaaaata tcttgttctg tcagctttgc cataatgtat atcctctcgg
      541 ttcaccgaaa aaaacaaagc accacaaagt ggctttattc ctttgatttt tataaggctt
      601 attgcctaag gcgtttttga aaacgcgcat cataacacgt tttggattgg tttttttatt
      661 ttctttacat tattgatatt gccgttccat ttcctgcgaa cggcgcacac aggcacaaac
      721 gccctcgctt atggcttcgg cgacacgatg ccgcctgaaa gcttccacgg cttcgtgggt
      781 tgtcccgcct tttgacgtta catttttttg aagcttctcg aaatcttcac ccgtctgctc
      841 ggcaagggta accgctcctt taaacgttgc cagactgagc gcgcgtgctt ctgccatatc
      901 aaacccttgt cggatggcgg cattttgcaa tgcgtccagc agataaaaca cataagccgg
      961 tccgctgccg ctgataccgg taatgctgtg catttgcgct tcatcttcca accaaacggt
     1021 caaaccgact gatttcatga ttcgatcggc aatcctgcgg tctgtttccg atacttccgc
     1081 ttcggcatac ataccggata cgcccagtcc tattttcccg ggcgtattcg gcataacccg
     1141 gacaatgcgg cggcttcccc cgaggtaacg gctgagcgta ccgactgaca atccggctgc
     1201 gacagaaagc accaatgcgc cgttggtgca gatatttttg cacgcggctt ccatatcctg
     1261 cggtttgacg gcaaggatta aaacatcgtc ggaatgaagc tccggcaggg ttgccgaagt
     1321 ttcgaccccc aactcttttt ccaaacgttc gcgtttttcc gcaccccgat tggctatata
     1381 gatgcggtaa ccgccttgtt tgaccaatcc gcccgcaacg gcagccgcca tattgccgcc
     1441 gccgagaaaa taaacattca ttatttctac cctattcaaa attacctgac taaattcatt
     1501 cccaattttt taccatcgga cgcgctcgga cagaccgttg cgccgcaacc cctgcttttc
     1561 caagcagtca aatcctccct gtttgaacgt ctcaatcaaa ggtttgccgt cacgcgtacg
     1621 ccaatccagc ccgcaggctt caaacttccc tattttcctg taaaagtaag attgttgtgc
     1681 ggattcatat tcgtttgccc tgacggaacg attgccgtct gaaagcggta tctcgtagtc
     1741 ctctaaagac ggcggactct cgccgccaat atcccaaaaa tcgatggcag ccggttttct
     1801 cggcttacac cagccggaca gggacgaaca ctcaatacca acccgccaac cggcagcctg
     1861 caaccgtaaa tgcaagcaac gcagccattg ccgtatattt tattgcccga atttccatca
     1921 gccccttttc ccgaaaatcg cgctgccgat acggacgtgt gtcgcaccgc actcaatggc
     1981 ggcaggcata tcgtccgaca tccccataga cagcacgtct gccttaacgc cagccgcatt
     2041 gaggtcggca agcagtttcc gcatcgtttg aaattgcacc ttcaactccg tttcactgct
     2101 gttggctttg gcaacacaca tcagtccgcg tacgacgata ttcggcagct tcgccacttc
     2161 cacagcaagc gcgactgctt cttcgggcgc gacaccgtgc ttcaccgcct cgcccgcaat
     2221 attcacctcg atacacacct gcaagggcgg cattgaggaa ggacgctgtt cgctcaaccg
     2281 gacagcggtt ttcagacggc atacggtatg cacccaatgc gcgcgttcgg cgacaaattt
     2341 ggttttattg gactgcacat cgccgatgac gtgccacacg atgtcggtca aatccgccaa
     2401 ctcttccgtt ttgccgtacc actcctgaat atagttctcg ccgaaatcac gctgtccggc
     2461 ggcgtaaact tcgcggatgc cgtctgaagg gaaagtctta ccgacggcaa tcaggctgac
     2521 ggaatgcggc ttccttcccg cctgcagaac caattttccg atacggtcgg acacctcaca
     2581 ataacgttct tgcaacaccg tcatagatta tcccctaatt aaaaatgatt aaacagttga
     2641 aaccctccag tcagggcggt acaatcaagg ttgttagaac cattccaacc aatcgaaaca
     2701 ttatactaaa cagagccgca ttatgcagat taccgactta ctcgccttcg gcgctaaaaa
     2761 caaagcatcc gaccttcacc tgagttcggg catatcccct atgattcggg ttcacggcga
     2821 tatgcggcgc atcaaccttc ccgaaatgag cgcggaagag gtcggtaata tggtaacttc
     2881 ggtgatgaac gaccaccagc ggaaaatcta ccagcaaaac ttggaagtcg acttctcgtt
     2941 cgaactgccc aacgtcgccc gattccgcgt caacgccttc aacatcggcc gcggtcccgc
     3001 cgccgtattc cgcaccattc ccagcaccgt cttatcgctg gaagaattga aagccccgag
     3061 cattttccaa aaaatcgcag aatcgccgcg cggcatggtt ttggttaccg gccctaccgg
     3121 ttcgggcaaa tcgaccacgc ttgccgcaat gatcaactac atcaacgaaa cccagccggc
     3181 acacatcctg accatcgaag acccgatcga attcgtccac caaagcaaaa aatccctgat
     3241 taaccagcgc gagctgcacc agcacaccct cagcttcgcc aacgcgctgc gttccgcatt
     3301 gcgcgaagac cccgacgtta tccttgtcgg cgagatgcgc gacccagaaa ccatcggctt
     3361 ggcgctgacc gccgccgaaa ccggacactt ggttttcggc acgctgcaca cgaccggcgc
     3421 agcaaaaacc gtcgaccgta tcgtggacgt attcccagcg ggagaaaaag aaatggtgcg
     3481 ctctatgctg tccgaatcgc tgaccgccgt catctcccaa aacctgctga aaacgcacga
     3541 cggcaacggc cgtgtcgcct cgcacgaaat cctgattgcc aaccccgccg tccgcaacct
     3601 catccgcgaa aacaaaatca cgcagattaa ctccgtccta caaaccgggc aggcgagcgg
     3661 tatgcagaca atggaccaat cgctgcaatc gctggtgcgc caagggctga tcgcaccgga
     3721 agtcgcacgc agacgcgcgc aaaacagcga aagtatgagt ttctgacaca caaccgcctt
     3781 ccggccatac cgacgggaaa acaaggcgca aacacgcggg gcgggacgca gcatcccgcc
     3841 cggctacctt tccgaacaag aagcgtccgc cttcctgttg aaacctgccg ccgcaaactg
     3901 caaggcttaa accgaaaaga agctaacgat gaataccgat aacctgcacg acatcttgga
     3961 cgaaatggtt caagtgtatt ctcaaaaaaa acaaagccga tccgaaaccc cggccgaaat
     4021 cggcgcacac ttccacccgc tgctcgaccg cctgtgcgaa accgcagaag cacaaaacgc
     4081 gtccgacatc cttatcagca aaggattccc gccctcgttg aaaatcaaca gcgcattaac
     4141 cccgcagccg caaaaggcgc tgacgggcga ggaaaccgcc gccatcgccg catcgacgat
     4201 gaacgccgaa caatcggaaa tattccggcg cgacggcgaa atcaactact ccgtccagtc
     4261 gcgcagcggc acgcgctacc gcgccaacgc ctaccacagc caaggcagcg caggtttggt
     4321 tttgcggcgc atcaaccacg tcatcccgca aatgcaggaa ttgggcctgc ccgaaaaact
     4381 caaagacctc gccgtcgcac cgcgcgggct gctgattatc gtcgggccta ccggttcggg
     4441 caaatccacc acgatggcga ctatgctcga acaccgcaac aaaaccctgc ccagccatat
     4501 cgttaccatc gaagacccga ttgagtttat ctacaaaccg cgccgctgca tctttaccca
     4561 gcgcgaaatc ggcgtcgaca ccataaactg gcagacggcg gtacaaaacg ctatgcgcca
     4621 atcccccgac gtggtctgca tcggcgaagt ccgcagcagg gaaagtatgg aatacgcgat
     4681 gcagctcgcc caaaccggcc acctgtgcat ttttacgctc cacgccaaca ccgcgccgca
     4741 gtcgctcgaa cgcatactca acttctaccc caaagaacag cacaaccaaa tactgatcga
     4801 catcgccctc aacctgaccg gcatcatctg ccaacgcctc gccctcaaac aagacaaaac
     4861 gggcaggacg gcggttgtcg acttgctcat caacacgccc gccatccaag acttcatcct
     4921 gaagggcgac ctgatgaaca tcagtaaaat catggaaacc gccaaaaccg acggaatgca
     4981 gacgatggat caaaaccttt tcgaactgta ccgtcacggc atcatcagtt acgaagaagc
     5041 cctgcgccag tccgtttccg ccaacaacct gcgattgcac atccaactgc acaaagaagg
     5101 caaaacgccc gaactccttt acgacagggt caacggtctc aacctcattt cctgatccgc
     5161 aaaacccaat gccgtctgaa aaccgcatcc ccgttttcag acggcatgat tttatccgcc
     5221 ccattcatgt gctacacttt atagtggatt aaat
//
LOCUS       DAXHNP010000138         5252 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.138, whole genome shotgun sequence.
ACCESSION   DAXHNP010000138 DAXHNP010000000
VERSION     DAXHNP010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.138"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            144..2321
                     /locus_tag="ACFM5C_001733"
     CDS             144..2321
                     /locus_tag="ACFM5C_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6069393.1"
                     /translation="MCKPNYGGIVLLPLLLASCIGGNFGVQPVVESTPTAYPVTFKSK
                     DVPTSPPAKPSIETTPVNQPAVGAAMRLPRRNIAAFDKNGNEIPDSKQAEEYLPLKEE
                     DILFLDGTPKEQADKLKKEINGRYPNVTIYTSDLKDAVYKYEHVRAGYVYTRFGTDEI
                     EQNSGGKQVTHRLGYDGFVYYSGERPSQSLPSAGTVKYSGNWQYMTDVKRHRAGKAVG
                     IDNLGYITFYGNDVGATSYAAKDVDEREKHPAKYTVDFDKKTLTGQLIKNQYVQKKTD
                     EKKPLTIYNITAKLDGNRFTGSAKVNPDLAKNPAGNERLFFHADADQRLEGGFFGDNG
                     EELAGRFISNDNSVFGVFAGKKTETANAADTKPALPSGKHTKILDSLKISVDEATDGH
                     ARKFAISSMPDFGHPDKLLVEGREIPLVNKEQIIKLADGRKMTVSACCDFLTYVKLGR
                     IKTDRPAAKPKAQDEDSEDEIGESEENEDEISDEEGTEDEVVEDEGSEEDEVSEGDNG
                     ENEEEIAEEETEEEVDEAEEEKVEEPEEELPAEEGNGGSGSILPTPEAPKGRDIDLFL
                     KGIRTAEADIPKTGKAHYTGTWEARIGVPDKKDDQPGTTFIQKDSYANQGAKAEFDVD
                     FGAKSLSGKLTEKNDTHPAVYIENGVIDGNGFHATARTRDNGIDLSGQGSTSPQSFKA
                     NNLLVTGGFYGPQAAELGGNIIDSDRKFGAVFGAKKDNKEVEK"
     gene            2318..5152
                     /gene="lbpA"
                     /locus_tag="ACFM5C_001734"
                     /gene_synonym="tbpA"
     CDS             2318..5152
                     /gene="lbpA"
                     /locus_tag="ACFM5C_001734"
                     /gene_synonym="tbpA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin-binding protein LbpA"
                     /protein_id="HFC6069394.1"
                     /translation="MNKKHGFQLTLTALAVAAAFPSYAANPETAAPDAAQTQSLKEVT
                     VRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYS
                     IRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAG
                     SSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSKDGW
                     EGLLIRTERQGRETRPHGDIADGVAYGINRLDAFRQTHDIQSQDKTGQFFLVEGENTL
                     KPVAKLAGYGIYLNRQLNRWVKERIEKNQPLSAEEEAMVREAQARHENLSAQAYTGGG
                     RILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDEADKF
                     RDKSGVYDGDDFRDGLYFVPNIEEWKGDKKLVRGIGLKYSRTKFIDEHHRRRRMGLLY
                     RYENEAYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSS
                     DRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASNAISRPEQLSHNAARISEST
                     GFDEKNQDKYRLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYF
                     DFSLGGRYDRKNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSLSYRASSGFRTPSFQ
                     ELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVAD
                     HKTKLPNQAGQLTEIDIRDYYNAQNMSLQGVNILGKIDWNGVYGKLPEGLYTTLAYNR
                     IKPKSVSNRPDLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELA
                     YLAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAE
                     STANRHGGDSNYGRYAAPGRNFSLALEMKF"
BASE COUNT         1504 a         1229 c         1396 g         1123 t
ORIGIN      
        1 ggaatgacgg aatgtatctg tactgtctgc ggctcgtcgc cttgtcctga tttttgttaa
       61 ttcactataa aaacgggttg atattatctg tacatattaa tataatgata attattatta
      121 atcaaatagg aggaaaagta gggatgtgta aaccgaatta tggcggcatt gtcttgttgc
      181 ccttactttt ggcatcttgc atcggcggca atttcggcgt gcagcctgtt gtcgaatcaa
      241 cgccgaccgc gtaccccgtc actttcaagt ctaaggacgt tcccacttcg ccccctgcca
      301 aaccttctat agaaaccacg ccggtcaatc aacctgccgt cggtgcggca atgcggctgc
      361 caaggcggaa tatcgcagct tttgataaaa atggtaatga aattcccgat agtaagcagg
      421 cagaggagta tctgccgctc aaagaggagg atatcctgtt tttagacggt acgccgaaag
      481 aacaggctga taaacttaaa aaggaaatca acggacggta tcctaatgta acaatctaca
      541 cgtccgattt aaaagatgct gtgtataaat atgaacatgt ccgggccgga tatgtttata
      601 ctagatttgg aacagatgaa atcgaacaga actcaggtgg taagcaggtt acccaccgct
      661 taggttatga tggttttgta tattattctg gagaacgtcc ttcccaatct ttaccgagcg
      721 cgggaacggt gaaatattcc ggaaactggc aatatatgac cgatgtcaaa cgtcatcgag
      781 caggtaaggc ggttggcatt gacaatttgg gttatatcac attttatggt aacgatgttg
      841 gtgcaacttc ttatgcggct aaggatgtcg acgaaaggga aaaacatcct gctaaatata
      901 cggttgattt cgataagaaa actttgacag gtcaattaat taaaaatcag tatgtgcaaa
      961 agaaaaccga tgaaaagaaa ccactgacca tttacaacat tactgcaaaa ttggacggca
     1021 accgctttac cggcagtgcc aaggtcaatc ctgatttagc gaaaaaccct gccggtaatg
     1081 agcgtttgtt tttccatgcc gatgccgatc agcggcttga gggcggtttt ttcggcgata
     1141 acggagaaga gcttgccgga cggtttatca gcaacgacaa cagcgtattc ggcgtattcg
     1201 caggcaaaaa aacagagaca gcaaacgcag cagatacaaa acctgccctg ccgtctggaa
     1261 aacacaccaa aatcttggat tctctaaaaa tttccgttga cgaggcgact gatggccatg
     1321 cccgtaagtt tgccatttcc tctatgcccg attttggtca tcccgacaaa cttcttgtcg
     1381 aagggcgtga aattcctttg gtaaacaaag aacaaatcat caagcttgcc gacggcagga
     1441 aaatgaccgt cagtgcttgt tgcgattttc tgacctatgt gaaactcgga cggataaaaa
     1501 ccgaccgccc cgccgccaaa ccaaaggcac aggacgaaga ttccgaagat gaaattggtg
     1561 aaagcgaaga aaacgaagac gaaatcagcg atgaagaagg cacggaagat gaagtcgtag
     1621 aagatgaagg cagcgaagaa gacgaagttt ccgaaggtga taacggtgaa aacgaagaag
     1681 aaatcgccga agaagaaacc gaagaagaag ttgatgaagc cgaagaggag aaagttgaag
     1741 aacccgaaga agaattgccg gcagaagaag gcaacggcgg ttcaggcagc atcctgccca
     1801 ctccggaagc ccctaaaggc agggacatcg accttttcct gaaaggtatc cgcacggcgg
     1861 aagccgacat tccaaaaact ggaaaagcac actataccgg cacttgggaa gcgcgtatcg
     1921 gcgtaccaga taagaaagac gatcagcctg gcactacgtt cattcaaaag gatagctatg
     1981 cgaatcaagg ggcaaaagca gaatttgacg ttgatttcgg cgcgaagtcg ctttcaggta
     2041 agttgacaga aaaaaatgat acacaccccg ctgtttatat tgaaaacggt gtgattgatg
     2101 gcaacggttt ccacgcgaca gcacgcactc gggataacgg tattgacctt tctgggcagg
     2161 gttcgaccag cccgcagagc ttcaaagcca acaatcttct tgtaacaggc ggcttttatg
     2221 gaccgcaggc ggcggaattg ggcggtaata ttatcgacag cgaccggaaa ttcggcgcgg
     2281 tattcggtgc gaagaaagat aataaagagg tggaaaaatg aataagaaac acggttttca
     2341 gcttaccctg actgccttgg ctgttgccgc cgccttcccg tcatatgcgg caaaccctga
     2401 aacggcggca cctgatgcgg cgcagaccca atccctgaaa gaggttaccg tccgtgccgc
     2461 caaagtggga cggcgatcga aagaggcgac cggtttgggc aaaatcgtca aaacgtcgga
     2521 aacgttgaac aaagaacagg tactcggtat ccgcgacctg acgcgctacg atccgggcgt
     2581 ggcggttgtc gaacagggca acggcgcgag cggcggctac tcgatacgcg gcgtggataa
     2641 aaaccgtgtg gcggtttcgg ttgacggcgt tgcccaaata caggcgttta ccgtgcaggg
     2701 atcgttgagc ggatacggcg gacgcggcgg cagcggtgca atcaacgaaa tcgaatatga
     2761 aaacatcagc acggtggaaa tcgacaaagg tgccggttcg tccgatcacg gcagcggcgc
     2821 actcggcggc gcggtcgcct tccgcaccaa agaggcggca gacctgattt cagacggcaa
     2881 aagctggggg atacaggcaa aaactgccta cggcagtaaa aaccgccaat ttatgaagtc
     2941 gctcggcgcg ggtttcagca aagatggttg ggaagggctg ttaatccgaa ccgaacgcca
     3001 agggcgggaa acgcgcccgc acggcgatat tgcggatggg gtggcatacg gcataaaccg
     3061 tttggacgcg ttccgccaga cacacgatat tcaaagccaa gataaaacag ggcaattttt
     3121 cttagtagag ggcgagaata cactcaagcc cgtggcaaaa ttggcgggct acgggatata
     3181 tttgaaccgc cagcttaacc gctgggtaaa agaacgtatt gaaaaaaatc agcctttaag
     3241 tgctgaagaa gaagcgatgg tgcgggaggc gcaggcgcgc cacgaaaacc tgtccgccca
     3301 agcttacacg ggcggcggca ggatattgcc cgatccgatg gattaccgca gcggctcttg
     3361 gcttgccaag ctgggctacc gcttcggcgg caggcattat gtcggcggcg tgtttgagga
     3421 taccaaacag cgttacgata tccgcgatat gacggaaaaa cagtattacg gtacggacga
     3481 ggcggacaag tttagagaca agagcggggt gtacgacggc gacgatttcc gcgacggctt
     3541 gtattttgtg ccgaatatag aagagtggaa gggcgataaa aagttggtca ggggcatagg
     3601 tttgaaatat tcccgcacca aatttattga tgaacatcac cgccgccgcc gtatgggttt
     3661 gctgtaccgt tatgaaaacg aagcgtattc tgacaactgg gcggataagg cggtgttgtc
     3721 gtttgacaaa cagggcgtgg caaccgacaa caacacgctg aagctgaatt gcgccgtgta
     3781 tcctgctgtg gacaaatcct gccgcgcgtc ggcggacaaa ccgtattcct acgacagcag
     3841 cgaccgtttc cactaccgcg aacagcacaa tgttttgaat gcctcgtttg agaaatcgct
     3901 gaaaaacaaa tggacgaaac accatctgac tttgggcttc ggttacgatg cttccaacgc
     3961 gatttcccgc cctgaacagc tttcccacaa tgcggcaagg atttcggaat ccacgggatt
     4021 cgatgaaaag aatcaagata agtaccgttt gggtaagccc gaagtcgtcg aagggtcggt
     4081 ctgcggctac atcgaaaccc tgcgttcccg caaatgcgtg ccaagaaaaa tcaacggcag
     4141 caatatccac atttctttga acgaccgttt ttcaatcggc aaatattttg atttcagctt
     4201 gggtggcagg tacgaccgga aaaacttcac cacgtcggaa gaactcgtcc gcagcggacg
     4261 gtatgttgac cgttcgtgga acagcggcat cgtgttcaaa ccgaaccggc atttttcttt
     4321 gtcttaccgc gcctccagcg gcttcagaac gccctcattc caagaacttt tcgggataga
     4381 catttatcac gattatccga aaggctggca gcgtcccgcc ctgaaatcgg aaaaggcagc
     4441 caaccgcgaa atcggtttgc agtggaaggg cgatttcggc tttttggaaa tcagcagctt
     4501 ccgcaaccgt tataccgata tgattgccgt tgccgatcac aaaaccaaat tgccgaatca
     4561 ggcaggacaa ttgacagaga ttgatatacg cgattattac aatgcccaaa atatgtcgct
     4621 ccaaggcgtt aatatattgg gaaaaatcga ctggaacggt gtgtacggca aactgcccga
     4681 aggtttgtac accacattgg catacaaccg catcaaaccg aaatcggtat ccaaccggcc
     4741 ggacttgtcc ctccgcagct atgctttgga tgcggtacag ccgtcgcgtt atgttttggg
     4801 gttcggatac gaccagccag aggggaaatg gggcgcaaac attatgctga cctattccaa
     4861 agggaaaaac cctgacgagc ttgcttatct ggcaggcgat caaaaacgat attcgacaaa
     4921 aagagcgtcg tcttcttggt cgacggcaga cgtttccgcc tatctgaatc tgaaaaaacg
     4981 gctgaccttg agggcggcta tctacaatat cggcaactac cgctacgtta cttgggaatc
     5041 cttgcgccag actgcggaaa gcacggcaaa ccggcacggc ggcgacagca actatggaag
     5101 gtatgccgca ccgggcagga acttcagcct cgcgctcgaa atgaagtttt aaaggaaata
     5161 ccgtctgaaa gcttgatctg caccccaaaa gtcggactaa accgccaact gattaaggtg
     5221 caggtttttt tgattcgata taaacaagat tt
//
LOCUS       DAXHNP010000139         5174 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.139, whole genome shotgun sequence.
ACCESSION   DAXHNP010000139 DAXHNP010000000
VERSION     DAXHNP010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5174
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.139"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(82..1338)
                     /locus_tag="ACFM5C_001735"
     CDS             complement(82..1338)
                     /locus_tag="ACFM5C_001735"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFC6069395.1"
                     /translation="MNAAQLDHTAKVLAEMLTFKQPSDAVLSAYFREHKKLGRQDRHE
                     IAETAFAALRHYQKISTALRRPHAQPRKAALAALVLGRSTNISQIKDLLDEEEIEFLG
                     NLKARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKG
                     KRDKVLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALL
                     VGAKRGEIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNV
                     HPERISSEHDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQH
                     SILDAASKLVKPQGRLVYATCSVLPEENELQVERFLSEHPEFEPVNCAELLQSLKVDL
                     DTGKYLRLDSARHQTDGFFAAVLQRK"
     gene            complement(1686..2027)
                     /locus_tag="ACFM5C_001736"
     CDS             complement(1686..2027)
                     /locus_tag="ACFM5C_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069396.1"
                     /translation="MKNNVKNWTTKEVKQSLDKFNNILIKNTFLLQYLKKEFSASSAY
                     CLSMLPEEEDIYEILVNGNIIIDLEFNKHTNETVVINVTDVDEYLKTLTNESGRVFFT
                     LAKEIGKQKNI"
     gene            complement(2231..3088)
                     /locus_tag="ACFM5C_001737"
     CDS             complement(2231..3088)
                     /locus_tag="ACFM5C_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HFC6069397.1"
                     /translation="MNYALDALWWKLTSQPVRDLASLLTAPPLWQSGCELGVRELLGE
                     RGFRYLLALDADSAPLTDYLARRAPFGHRLGIYAEELLAFWFANAPHAELLAHNLTVS
                     GSDGNTQGAADFVVRLNGKPYHIELTCKYYGGGTGRLEDMRGLDPKDTLLGKAAKLTA
                     QLGLPHTSDGIRTLRQHGLPLDVKPVSIVRGIGFFPQSFHAFEPPLNPYGWRGIYIQD
                     WAEYGFERQEVRYHLLDRMAYLAPARAAETETLNETEIRRIDQGLIAVLECRPDGFWH
                     EIERIMKAV"
     gene            complement(3150..3965)
                     /locus_tag="ACFM5C_001738"
     CDS             complement(3150..3965)
                     /locus_tag="ACFM5C_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HFC6069398.1"
                     /translation="MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLT
                     IVAPNLMATPMTENPPVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD
                     TTIACALTSRRREITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACN
                     RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTGSPMTHLQQEDHAATHEQIKGMVAHME
                     SVMNDIGFFNRRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTVSHRIHKKD"
     gene            4029..4199
                     /locus_tag="ACFM5C_001739"
     CDS             4029..4199
                     /locus_tag="ACFM5C_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069399.1"
                     /translation="MPSEMFFNNVGNLTLRLKQTRVGRYFTRFGRIYPNQINSDFAAP
                     KDCASEPAVCHP"
     gene            4209..4994
                     /locus_tag="ACFM5C_001740"
     CDS             4209..4994
                     /locus_tag="ACFM5C_001740"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6069400.1"
                     /translation="MNPFLNTAFKAARRAGQMMIRAAGNLDAVKTDSKAFNDFVSDVD
                     RNSEIILVEALKEAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHGHPQYAIS
                     MALLHKGVLQEALVYAPERNDVYMASRGKGALLNDRRIRVSNRIELNRCLIGTGFPVV
                     DQSMMDKYLAILKDFLAKTAGGRREGAASLDLCAVATGRFDGFFEFNLKPWDIAAGAL
                     IVQEAGGIVTDMTGEDGWLESGDIVAANPKVLAQMLKIISAHV"
     gene            complement(4975..>5174)
                     /locus_tag="ACFM5C_001741"
     CDS             complement(4975..>5174)
                     /locus_tag="ACFM5C_001741"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069401.1"
                     /translation="IVQGSPFNQIWVSIFGSFGHLAVSTFLPPLPVKMPSEISARYFR
                     RHTRPFSRIPGSGLKFKRVRK"
BASE COUNT         1163 a         1211 c         1410 g         1390 t
ORIGIN      
        1 tttttgttaa tccactataa ttgatgaaat gccgtctgaa cgctttgaaa agggttcgga
       61 cggcattttg ttcaaaccgg tttatttgcg ttgcaatacg gcggcgaaga agccgtcggt
      121 ttggtgtcgg gcggaatcga ggcgcaggta ttttccggta tccaaatcaa ccttcaggct
      181 ttgcagcagt tcggcgcagt tgacgggttc aaattcggga tgttcggaca ggaaacgttc
      241 gacttgcagc tcgttttctt ccggcaacac gctgcaggtg gcgtacacca agcggccttg
      301 cggtttcacc agtttggatg cggcatcgag gatgctgtgt tgctgttcca aaaggttggc
      361 cacggtctcg gcggattggc ggtatttgag atcgggatta cggcgtaaag tacccaaacc
      421 ggagcagggc gcatccacta aaacgcggtc ggctttgcct gccagtcgtg cgatacggct
      481 atcatgttcg ctgctgatgc gttcggggtg gacgttggtc agtccggcgc gggtcatgcg
      541 cggtttgagg ttggcaaggc gtttttcggc gatgtcgaag gcgtagattc tgcctttgtt
      601 cgccatttgc gcgccgatgg cgagggtttt gccgcctgcg ccggcacaga aatcgacaat
      661 gatttcgccg cgttttgcgc ccaccaataa agcaagcagc tggctgcctt cgtcttggac
      721 ttccagtgtg ccgtccaaaa acagctcgtg tttgttaagc gcgattttgt ttttcaggcg
      781 gatgccccaa ggcgaataag gcgttgcctc tgcatcggca ctttcggctt gcaacaatgg
      841 cagcacttta tcgcgtttgc ctttcaaggt attgacgcgt atatcgagcg gcgcagcttg
      901 gttgatgctg cggccgaagg cgaggatttc ttcttcgcgc caatgctgct gcagctgttc
      961 taccagccat tgcggcaatt ctgcggcggt attcaggccg tctgaaaact cggttttacg
     1021 ggctttcaaa ttgccgagaa actctatttc ttcttcatca agcaggtctt tgatttggct
     1081 gatgttggtg cttctgccga gaaccagtgc ggcgagtgcg gctttgcgcg gctgcgcgtg
     1141 cggacggcgc agggcggtac tgattttttg atagtggcgc agcgcggcaa aggcggtttc
     1201 ggcgatttcg tggcggtctt ggcggccgag ctttttgtgt tcgcggaaat aggcggagag
     1261 gacggcatcg gaaggctgtt tgaaagtcag catttcagcc aaaactttgg cggtatggtc
     1321 gagttgtgcg gcgttcataa tgtaatgggt tctcttactg tgggttattc ataatcaatc
     1381 taacgtcctt aaaataacaa tagcatcttt atcattactt agtattctat ccgcaataag
     1441 aaagatgtgt taaaagtgcg caatcgggat ttgtctaaat ttctccgtta actacaaagg
     1501 cagcctgaaa aaagttctat tttcaggtcg cttgaacagc atccgatata atcacatcag
     1561 cgatttcatt ttgtaatcac tccctaaaac atgaggaaaa aaacaaaatt tattttcttc
     1621 gttcagtata tctatcctaa atatgccatc actccattga gtttttaatt tgtatttcgc
     1681 tcttgttaaa tgtttttctg tttgccgatt tcttttgcta atgtaaaaaa tactctacca
     1741 ctctcattgg ttaaagtttt caagtattca tcaacatcag taacattaat aacaactgtt
     1801 tcatttgtat gtttattaaa ttctaaatca ataataatat tcccattaac caatatttca
     1861 tatatatctt cttcttcagg gagcatagac aaacaataag cacttgaagc tgaaaactct
     1921 tttttcagat actgaagaag aaaagtattt ttaattaaaa tattattaaa tttatctaat
     1981 gattgcttga cttctttagt tgtccaattt ttaacattat tcttcattgt attctacctg
     2041 gggtcgtagt tattaaatta ccatacttat ttgtttggat cgtcataata ttagttggca
     2101 tgttgttgtt atatttatca tatccaatat ccttattaac tcggatgact ctttcataaa
     2161 ttgtatggga aatgagattt ccatcactaa gcctctcaat agatatacgc gttaatgttg
     2221 ggaaagggtt tcagacggcc ttcataatgc gttcgatttc gtgccaaaag ccgtccggcc
     2281 gacattccaa aacggcaatc aagccttggt cgatacggcg gatttcggtt tcgttcaatg
     2341 tttcggtttc ggcggcacgc gcaggtgcga ggtaggccat gcggtcgagc agatggtagc
     2401 ggacttcttg gcgttcaaac ccgtattccg cccagtcttg aatatagatg ccgcgccagc
     2461 cgtatgggtt aagcggcggc tcaaaagcat ggaaactttg tggaaaaaat ccgatgccgc
     2521 gcacgatgga aacgggtttt acgtcaagcg gcagaccgtg ttgccgcaag gttcggatgc
     2581 cgtctgaagt gtgcggcaga ccgagttggg cggtcagttt ggcggctttt cccaacagcg
     2641 tgtctttggg gtcgagtccg cgcatgtctt cgagcctgcc cgtgccgccg ccgtaatatt
     2701 tgcaggtcag ctcgatatgg tagggcttgc cgttaagcct taccacaaaa tccgccgcgc
     2761 cttgcgtatt gccgtccgaa ccggaaaccg tgaggttgtg cgcgagcagt tcggcgtgtg
     2821 gcgcgttggc aaaccaaaat gccagcagtt cttcggcgta aatgcccaag cggtgtccga
     2881 acggggcgcg tcgggcgagg taatccgtca gcggagcgga atcggcatcc aatgccaaaa
     2941 gatagcggaa accgcgttcc cccaatagtt cgcgcacgcc caattcgcaa ccgctttgcc
     3001 acaaaggcgg cgcagtcagc agcgaggcga ggtcgcggac gggttggctg gtgagcttcc
     3061 accataatgc gtctagggcg taattcatgc ttatccgaat atcagtcatg ccgtctgaaa
     3121 agctggaaat gttttcagac ggccttaaat cagtcttttt tatggatgcg atggctgacg
     3181 gtattgaaaa aaccgcgcag gatgtcgatg tcttcggttt gcgtgttggc gcgtccgaac
     3241 aggctctgca tacggcgcat cagacgctcg ccgttgcggc ggttgaaaaa gccgatgtcg
     3301 ttcatcacgc tttccatgtg ggcgaccatg cctttgattt gctcgtgggt cgcagcgtgg
     3361 tcttcttgtt gaagatgggt catgggcgaa ccggtttggc tgaagatttc gtagcacacg
     3421 acctgcacgg cttgggcgag gttgagcgag aaatagtcgg gattgccgtt gatggtcatc
     3481 agtcggttgc aggcttggac ttcttcgatg ctcaagccga aagtctcgtt gccgaaaacc
     3541 agtgccactt tctcgcctcg gtttgcggtc tgcagtaatt cggataccaa atcgcgcggg
     3601 gtttgcagcg gcgcagtaat ttcgcggcgg cggctggtca gggcgcaggc gatggtggtg
     3661 tcggcaaggg cttcgtccaa agaagcggca atggtggcat tttccaaaac gtctgccgcg
     3721 ccggaagcga ggatgaagct ttcttccggt aatttaaacg attgaggatg ctccgggtca
     3781 aacacgggcg ggttttccgt catcggcgtt gccatcagat ttggggcgac gatggtcagt
     3841 ttgtgcagac ccattgtttt catcgcgcgc gcggcagagc cgatgttggc gggatggctg
     3901 gtgcgcgtga ggatgatgcg gatgttgtcc agataagcgg gcagggcggg tttgagagta
     3961 gtcatgttcg gttttcggtc ggaatggaat agggtataat gcgccgtctt tttcgttcgg
     4021 acggtcaaat gccgtctgaa atgttcttta acaacgtcgg aaatttaacg ttgcgcctga
     4081 agcagacacg cgtcgggcgg tattttaccc gatttggcag gatttacccc aaccaaataa
     4141 actccgattt tgccgctccg aaggactgcg cgtccgaacc ggcggtatgc cacccttaag
     4201 gaaatctgat gaatccgttt ttgaatacag cctttaaagc cgcccgccgt gccggtcaga
     4261 tgatgatacg cgccgcgggc aatctcgatg ccgtcaaaac cgacagcaaa gcattcaacg
     4321 attttgtttc cgatgttgac cgcaattccg aaatcatcct ggttgaggct ttgaaagaag
     4381 cctatccgca ccacaaaatc acttgcgaag aaagcggctc ccacggtaaa gccgcagccg
     4441 aatacgaatg gattatcgat ccgctcgacg gcacgaccaa cttccttcac ggccatcccc
     4501 aatacgccat ctctatggca ctcctgcaca aaggcgtgtt gcaagaagct ttggtgtacg
     4561 cccccgaacg caacgacgtt tacatggctt cgcgcggcaa aggcgcgttg ctcaatgacc
     4621 gccgcatccg cgtttccaac cgcatcgaat tgaaccgctg cctgatcggt accggctttc
     4681 ctgttgtcga tcaaagcatg atggacaagt atctggcgat tttgaaagat ttcttggcaa
     4741 aaaccgccgg cggccgtcgt gaaggcgcgg cttctttgga tttgtgtgct gtggcgactg
     4801 gtcgttttga cggctttttc gagttcaacc tcaaaccttg ggatattgcc gcaggcgcat
     4861 tgattgttca ggaagcgggc ggtatcgtaa ccgatatgac gggtgaagac ggctggctgg
     4921 aaagcggcga tattgttgcc gccaatccca aagtgctggc gcaaatgtta aaaatcattt
     4981 ccgcacacgt ttaaatttca gcccgctccc gggaatgcgg gaaaacgggc gggtatgccg
     5041 tctgaagtat cgcgccgata tttcagacgg catttttact ggcagcgggg gcaggaaggt
     5101 ggaaacggct aaatgcccga aactgccgaa gatggaaacc catatctgat taaacggaga
     5161 accctgtacg attt
//
LOCUS       DAXHNP010000140         4998 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.140, whole genome shotgun sequence.
ACCESSION   DAXHNP010000140 DAXHNP010000000
VERSION     DAXHNP010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.140"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(31..672)
                     /locus_tag="ACFM5C_001742"
     CDS             complement(31..672)
                     /locus_tag="ACFM5C_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HFC6069402.1"
                     /translation="MPSEKPMNRRTFLLGAGALLLTACGRKSARTHAKIPEGSTVLAL
                     GDSLTFGYGANPGESYPAQLQKLTGWNIVNGGVSGDTSAQALSRLPALLARKPKLVIV
                     GIGGNDFLRKVPKEQTRANIAKIIETVQKENIPAVLVGVPHITLGALFGHLNDHPLYE
                     DLSEEYGIPLFGGAWAEILGDNNLKSDQIHANGKGYRKFAEDLNQFLRKQGFR"
     gene            complement(662..1213)
                     /locus_tag="ACFM5C_001743"
     CDS             complement(662..1213)
                     /locus_tag="ACFM5C_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HFC6069403.1"
                     /translation="MNYCEFAASLPENTDNPNKHYHDTQYGFPIDSDNGLFERLVLEI
                     NQAGLSWTLMLKKRQAFQTAFEGFDINTVAAFDDTDRERLLADAGIVRNRLKIDAAIF
                     NARQIQALQQEYGSFKNWLDAHHPRSKDEWVKLFKKHFKFVGGEIVGEFLMSTGYLKG
                     AHAESCPVYRETLKYHPKWLDAI"
     gene            complement(1217..1735)
                     /locus_tag="ACFM5C_001744"
     CDS             complement(1217..1735)
                     /locus_tag="ACFM5C_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HFC6069404.1"
                     /translation="MRLFPIAAALTLAACGTVQSTQYFVLPDSRYIRPATQGGETAVE
                     VRLAEPLKRGGLVYQTDPYRLNTAQNHVWADTLDDMLEAALSNAFNRLDNTRIFVPAS
                     RSGSTEKWTVYIDAFQGSYTGKTLISGYAVLPDGTNRPFHIETEQQGDGYAAMTAALE
                     QGLKQAAQQMVE"
     gene            complement(1735..3396)
                     /gene="pqiB"
                     /locus_tag="ACFM5C_001745"
     CDS             complement(1735..3396)
                     /gene="pqiB"
                     /locus_tag="ACFM5C_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HFC6069405.1"
                     /translation="MTDNSPPPNGHAQARVRKNNTFLSAVWLVPLIALIAGGWLWVKE
                     IRNRGPVVTLLMDSAEGIEVNNTVIKVLSIDVGRVTRIKLRDDQKGVEVTAQLNADVS
                     GLIRSDTQFWVVKPRIDQSGVTGLGTLLSGSYIAFTPGKSDEAKDVFQVQDIPPVTAI
                     GQSGLRLNLIGKNDRILNVNSPVLYENFMVGQVESAHFDPSDQSVHYTIFIQSPNDKL
                     IHSASRFWLESGINIETTGSGIKLNSAPLPALLSGAISFDSPKTKNSKNVKSEDSFTL
                     YDSRSEVANLPDDRSLYYTAFFKQSVRGLTVGSPVEYKGLNVGVVSDVPYFDRNDSLH
                     LFENGWIPVRIRIEPSRLEINADEQSKEHWKQQFQTALNKGLTATISSNNLLTGSKMI
                     ELNDQPSASPKLRPHTVYAGDTVIATQGGGLDDLQVKLADLLDKFGKLPLDKTVAELN
                     GSLAELKSTLKSANAALSSIDKLVGKPQTQNIPNELNQTLKELRTTLQGVSPQSPIYG
                     DVQNTLQSLDKTLKDVQPVINTLKEKPNALIFNSSSKDPIPKGSR"
     gene            complement(3389..4723)
                     /locus_tag="ACFM5C_001746"
     CDS             complement(3389..4723)
                     /locus_tag="ACFM5C_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqiA/YebS family transporter subunit"
                     /protein_id="HFC6069406.1"
                     /translation="MPPLIFATFPMKPFAENIPHSLRGNCCDEALPPHTVDCPECGCR
                     ADVPRLDSGEAAFCPRCGHKLFRVGRHPFSAPPAYAAASLILMAFAYGMTYIEVGIPG
                     AASVLSLPEMMRLMVFQDYGFLAEVMFVLTFGAPVLFLLLCLYVYAALIRKQAYPALR
                     LATRVMVRLRQAMMVDVFFVSTLVAYIKLSSVAEVRFGPAFYLMFALSVMLIRTSVSV
                     PQHWVYFQIGRLTGDNAVQTASEGKTCCSRCLYFRDSAESPCGVCGAELYRRRPKSLS
                     ISSAFLTAAVILYFPANILPIMISSNPAATEVNTILNGIAYMWDEGDRLIAAVIFSAS
                     ILVPVLKIAAMSVLIASARFALPTGAKKLSHLYRITEAVGRWSMIDIFVIIILMCSFH
                     TYAARVIPGSAAVYFCLVVILTMLSAYYFDPRLLWDKRASDGIAFNETEKHD"
BASE COUNT         1131 a         1259 c         1407 g         1201 t
ORIGIN      
        1 taaacaactt gggtgcggat aaacctttgt ttatctaaac ccctgttttc tcaaaaattg
       61 attcaaatct tcggcaaatt tccgatagcc tttgccgttg gcgtggattt ggtcggattt
      121 cagattatta tcgcccaaaa tttccgccca cgcgccgccg aacagcggaa tgccgtattc
      181 ctcggacaaa tcctcataca gcggatgatc gttcaaatgc ccgaacaacg cgcccaaggt
      241 aatgtgcggc acgccgacga ggacggcggg gatgttttcc ttctgcacgg tttcgatgat
      301 tttcgcgata ttggcgcggg tctgctcctt gggaactttg cgcagaaagt cgttgccgcc
      361 tatgccgaca atcacaagct tgggtttgcg tgccaacagc gcgggcaggc gcgacagggc
      421 ttgggcggat gtatcgcccg atacgccgcc gttgacaata ttccaacccg tcagtttttg
      481 cagttgcgcg gggtaggatt cgccagggtt tgcgccgtag ccgaaggtaa gcgaatcgcc
      541 caaggcaagt acggtgcttc cttcgggaat tttggcgtgg gttcgggcgg attttctgcc
      601 gcaggcggta aggagcaacg cgcctgcgcc gaggaggaag gttcttctgt tcattggttt
      661 ttcagatggc atcgagccat ttcgggtggt atttcagggt ttcacggtaa accggacagc
      721 tttcggcgtg cgcgcctttg aggtagccgg tactcatcag aaattcgccg acgatttcgc
      781 cgccgacgaa tttgaaatgt tttttaaaga gtttaaccca ttcgtctttg cttcgcggat
      841 ggtgcgcgtc gagccagttc ttgaacgagc cgtattcttg ttgcaacgct tggatttgcc
      901 gtgcattgaa aatggcggca tcgattttca ggcggttgcg gacgatgccc gcgtcggcaa
      961 gcaggcgttc gcggtcggtg tcgtcgaagg cggcaacggt attgatgtcg aaaccttcaa
     1021 atgccgtctg aaacgcctgc cgcttcttca gcatcagcgt ccagcttaat cctgcctgat
     1081 tgatttccaa caccagccgt tcaaacagtc cgttgtcgct gtcaatcgga aaaccgtatt
     1141 gcgtgtcgtg gtaatgtttg ttcgggttat cggtgttttc gggaagtgag gcggcaaatt
     1201 cgcaatagtt cacggtttac tcgaccatct gttgcgccgc ctgtttcagt ccctgttcga
     1261 gtgcggcggt catcgcggcg tagccgtcac cctgctgttc ggtttcgata tggaagggtc
     1321 tgttcgtacc gtcgggtagg acggcgtagc cgctgatgag ggttttgccc gtgtagctgc
     1381 cttggaatgc gtcgatatag accgtccatt tttcggtact gccgctgcgt gaggcaggaa
     1441 caaagatgcg tgtgttgtcc aaacggttga atgcattgct caacgccgct tcgagcatat
     1501 cgtccaaggt gtctgcccaa acgtggtttt gtgcggtgtt gaggcggtag gggtcggttt
     1561 gatagaccag tccgccgcgt ttgagcggtt cggcaagacg gacttcgacg gcggtttcgc
     1621 cgccttgtgt tgcaggacgg atgtagcggc tgtcgggcaa cacgaaatat tgtgtgcttt
     1681 gcacagtacc gcaggcggca agcgtcaggg cggcggcaat cgggaagagg cgcattatcg
     1741 gcttcctttc gggatggggt ctttgctgct gctgttgaaa atcagcgcgt tgggtttttc
     1801 tttcaaagtg ttaatgacgg gttgaacgtc ttttaaggtt ttgtccaaac tttgcaacgt
     1861 attttgtacg tcgccgtaga taggcgattg cggcgatacg ccttgcaggg ttgtgcgcaa
     1921 ctctttcagg gtttggttca gttcgttcgg aatgttttgt gtctgcggtt tgccgaccag
     1981 tttgtcgatg gagcttaggg cggcattggc agatttgagt gtggatttga gctcggcaag
     2041 cgaaccgttc aattcggcaa ccgtcttatc taaaggcagt ttgccgaatt tgtccagcaa
     2101 atccgccaat ttgacctgca aatcgtccaa accgccgccc tgggtcgcga taacggtatc
     2161 gcctgcataa acggtatgcg gtcgcagctt aggtgatgcg gaaggctgat cgttcaactc
     2221 aatcattttg cttccggtca gcaggttgtt gctggagatg gtggcggtca ggcctttgtt
     2281 taaggccgtc tgaaattgtt gtttccaatg ttctttgctt tgttcgtcgg cattgatttc
     2341 caaacgggaa ggttcaatgc ggatgcgtac gggtatccag ccgttttcaa acaggtgcag
     2401 gctgtcgttg cggtcgaaat aaggaacgtc ggaaaccacg ccgacattca gccctttgta
     2461 ctcgacgggc gaaccgacgg tcaggccgcg cacggattgt ttgaaaaacg cggtgtagta
     2521 cagcgagcgg tcgtcaggca ggttggcgac ttcgctgcgg ctgtcgtaaa gcgtgaagct
     2581 gtcttcgctt ttgacgtttt tactgttttt ggttttcggc gaatcaaatg aaatcgcgcc
     2641 cgacagcagg gcaggcagag gggcggaatt gagtttgatg ccgctgcctg tggtttcgat
     2701 attgatgccg ctttccagcc agaaacggct ggcggaatga atcagtttgt cgttggggct
     2761 ttggatgaag atggtgtaat gcacgctttg gtcggacggg tcgaaatgcg cgctttcgac
     2821 ttgcccgacc ataaagtttt catacaaaac agggctgttg acgttgagga tgcggtcgtt
     2881 tttaccaatc aaattcaagc gcagcccgct ttgcccgatg gcggtaacgg gcggaatgtc
     2941 ctgcacttgg aacacgtctt ttgcctcgtc gcttttgccg ggtgtaaagg cgatgtacga
     3001 acccgaaagc agcgtaccca aaccggttac gccgctttgg tcgatacgcg gcttgaccac
     3061 ccaaaactgg gtatcgctgc ggatgaggcc ggatacgtcc gcattgagtt gggcggttac
     3121 ttccacgcct ttttggtcgt cgcgcagttt gattcgggta acgcgtccga catcgatgct
     3181 caatactttg atgaccgtat tgttgacctc aatgccttcc gcgctgtcca tcaagagcgt
     3241 aaccacaggc cccctgttgc ggatttcctt aacccaaagc cagccgccgg caatcagcgc
     3301 gatcagcgga accagccaga cggcagagag gaaggtgttg tttttgcgga cgcgtgcttg
     3361 ggcgtgtccg tttggaggag ggctgttgtc agtcatgttt ttccgtttca ttgaaagcaa
     3421 tgccgtctga agcgcgtttg tcccaaagca ggcgcgggtc gaaataatag gcggacagca
     3481 tcgtcagaat cacgaccagg cagaaataga ctgccgcact gcccggaatg acgcgcgcgg
     3541 cataagtgtg gaacgaacac atcaaaataa taatcacaaa aatatcaatc atcgaccagc
     3601 ggccgaccgc ttcggtgatg cggtagaggt gcgacaattt ctttgcaccc gttggcaaag
     3661 cgaagcgggc ggacgcaatc aaaaccgaca ttgccgcaat cttcagtacc ggcaccaaaa
     3721 tactcgcgct gaaaataacc gccgcaatca gcctgtcgcc ctcgtcccac atataagcga
     3781 tgccgttaag gatggtattg acctccgtgg cggcaggatt ggacgaaatc ataatcggca
     3841 ggatattggc agggaaatac aaaataaccg ccgccgtcag aaacgccgac gaaatactca
     3901 gacttttcgg ccgtcggcgg tacagttccg caccgcacac gccgcagggg gattcggcac
     3961 tgtcgcggaa atacaggcag cggctgcaac aggttttacc ttccgatgcc gtctgaaccg
     4021 cattatcccc cgtcagccgc ccgatttgaa aatacaccca atgctgggga accgataccg
     4081 aagtccgaat cagcataacc gacagcgcga acatcagata aaacgccggc ccgaagcgaa
     4141 cctctgccac agacgagagc ttgatatacg ccaccaaagt ggaaacaaaa aacacatcca
     4201 ccatcatcgc ctgtctcaag cgcaccatca cacgcgttgc caaacgcagc gcaggatacg
     4261 cctgtttccg tatcagcgcg gcatagacat acaggcacag cagcagaaac agaaccggcg
     4321 cgccgaaagt cagcacaaac atcacttcgg ccaaaaaacc ataatcctga aacaccatca
     4381 ggcgcatcat ctcgggcagc gaaaggacgg atgccgcacc cggtatcccg acctcgatat
     4441 acgtcatacc gtaagcaaac gccattaaaa tcagcgaagc cgccgcatag gcgggcgggg
     4501 cggaaaaagg atgcctgccc accctgaaga gtttgtgtcc gcaacgggga cagaacgccg
     4561 cttctccact gtccaaccgg ggtacatccg cgcggcagcc gcattccgga caatctaccg
     4621 tatgcggcgg cagggcttcg tcgcagcagt tgccgcgaag gctgtggggg atattttcgg
     4681 caaacggctt catcgggaaa gtggcaaata taagtggcgg cattataaag gaaaaaaggc
     4741 gatacaccca atcaggatgc aaaaccggca ggttcggcag tatgaacaaa cccttggtgt
     4801 ccggcaaaaa tattttttga gcggttgtcc gccgactgcc gaacccattt gataaaatcc
     4861 cgattctgta aagaatagta aaatacctgc ttaaaaacat cacgcaaatg atattttttc
     4921 caaaaatatg tgataataaa tttcgtttat gattctttat tatttttata gtggattaac
     4981 aaaaatcagg acaaggcg
//
LOCUS       DAXHNP010000141         4947 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.141, whole genome shotgun sequence.
ACCESSION   DAXHNP010000141 DAXHNP010000000
VERSION     DAXHNP010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4947
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.141"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            102..1007
                     /gene="glyQ"
                     /locus_tag="ACFM5C_001747"
     CDS             102..1007
                     /gene="glyQ"
                     /locus_tag="ACFM5C_001747"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFC6069407.1"
                     /translation="MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRAL
                     GPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGI
                     DPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITY
                     GIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQ
                     FNDYEAQAKRLLAEENAALALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRAL
                     SRAVAQKYVESREKLGFPLMKANAA"
     gene            1084..1494
                     /locus_tag="ACFM5C_001748"
     CDS             1084..1494
                     /locus_tag="ACFM5C_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding protein YggL"
                     /protein_id="HFC6069408.1"
                     /translation="MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAE
                     DDAEAFDRFMDELIAYLAANGLEMAGGGDCGDFSCLFQKSGSRGLGETEKKAIISWLA
                     GREDVATLHATPLVDGFYGDDGWENYSETYKQAD"
     gene            1515..3578
                     /gene="glyS"
                     /locus_tag="ACFM5C_001749"
     CDS             1515..3578
                     /gene="glyS"
                     /locus_tag="ACFM5C_001749"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFC6069409.1"
                     /translation="MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGA
                     AEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAK
                     IEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINQAVKKLPIPKVMRWGSSTFTFVR
                     PVHGLIVLHGGDIVNVSVLGLQSSNQTLGHRFLSNGEITIENADSYAEQMRGQGKVVA
                     SFAERKAAIQTALEGQARRLNATVAADEALLDEVTALVEYPVVLEAGFEEHFLAVPQE
                     CLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTADPSHIIQGNERVLRARLSDAEFF
                     YKQDQKATLESRLPKLANVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAAR
                     LAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAIEQHYQPRFAGDNLPNGKVA
                     TAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFD
                     SFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDVVAKLQAVA
                     AFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAA
                     AVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADI
                     ALLGE"
     gene            3595..3996
                     /locus_tag="ACFM5C_001750"
     CDS             3595..3996
                     /locus_tag="ACFM5C_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6069410.1"
                     /translation="MPSEAFRRHRAYRENKLQPLVSVLICAYNAEKYFAQSLAAVVNQ
                     TWRNLEILIVDDGSTDGTLAIAKDFQKWDSRIKILAHDRLLNRKQQRRDSPANTFKHR
                     LIRALTKISREREKRRQRREQLIGKIIVPFQ"
     gene            4008..4940
                     /locus_tag="ACFM5C_001751"
     CDS             4008..4940
                     /locus_tag="ACFM5C_001751"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HFC6069411.1"
                     /translation="MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEAN
                     RAAVAANLRGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLD
                     IDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINL
                     KKWRRHDIFKMSCEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMAN
                     RFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEE
                     WRGKLAVPHRMFSTKRMLQRWRRKLSARFLRKIY"
BASE COUNT         1260 a         1394 c         1289 g         1004 t
ORIGIN      
        1 atgtatgccg tgttttcaaa tcagtctgtc tttgagataa acctatccaa acagcaatgg
       61 aaacagtaaa ataaaccctt tattttatcg aatcataagc catgcttacc ttccaacaaa
      121 tcatcttcaa actgcaaaca ttctgggcag acaaaggctg caccgtcatc caacccttcg
      181 acatggaagt cggtgccggc acatcccatc ccgccacctg cctgcgcgca ctcggccccg
      241 agccttggtt tgccgcctac gtccaaccca gccgccgccc caaagacggc cgctacggcg
      301 acaaccccaa ccgcctgcaa cactattacc aattccaagt cgccctcaag cccgctcccg
      361 ccaatatcca agacctctat ctcgactctc tgcgcgaatt gggcatcgat cccaaagtcc
      421 acgacatccg ctttgtcgaa gacgactggg aaaaccccac cctcggcgcg tggggtttgg
      481 gctgggaagt ctggctcaac ggcatggaag taacccagtt tacctatttc caacaagtcg
      541 gcggcatcga ctgcaccccc gtactcggcg aaatcaccta cggcatcgaa cgcttggcga
      601 tgtacctgca aggcgtggaa aacgtctatg acctcgtttg ggcaaaaacg ctggacggta
      661 atacagtaac ttacggcgac gtgtaccacc aaaacgaagt cgaacaatcc acctacaact
      721 tcgaatacag cgatgccgac tggctgctgc gccagttcaa cgactacgaa gcgcaagcca
      781 aacgcctgct tgccgaagaa aacgccgccc tcgccctgcc tgcctacgag cttgtcctca
      841 aagcggggca tacgttcaac cttttagacg cacgcggcgc gatttccgta actgagcggg
      901 caacttatat tggacgtatt cgtgcattga gccgcgccgt ggcgcaaaaa tatgttgaaa
      961 gccgcgaaaa actgggcttc cctttaatga aggcaaacgc cgcctaaggg ggcgacgatt
     1021 ttttacgttc gggcggcacg ataaggcagc cgtccggaag ccattatatt ttttaggaaa
     1081 atcatgcctg tctatttccg caccccaagc aggaaacgcc tgcacaaaat gaaccgccgc
     1141 cagcataaaa agctgcattt gggcgagttt caaacattga ttttcggcgt tcaaggcagt
     1201 ttgcaccaag ctgaggacga tgccgaagcg ttcgaccgct ttatggacga gctgattgcg
     1261 tatcttgcgg caaacggctt ggaaatggcg ggcgggggcg attgcggcga tttttcgtgc
     1321 ctgtttcaaa aatccggctc ccgaggcttg ggcgaaaccg agaaaaaagc cattatctct
     1381 tggctggcag gtcgcgaaga tgtcgccact ttgcacgcca ccccgctggt tgacggtttt
     1441 tacggggatg acggctggga aaattacagc gaaacttata aacaggcaga ttaaccaaat
     1501 tcaaagaaag ccgaatgatg acccaaaccc ttttaatcga actccttacc gaagaactcc
     1561 cgcccaaagc tctgaataat ctgggcaacc attttgccgc cgccgttgcc gaaggcttgg
     1621 aaaaagcgca actggttgac ggtgcagccg aatttacggc ttatgcctcg ccgcgccgtt
     1681 tggcggttca agtcaaaaac gttaaagccg ttcaggccga ccaaaaaatc gtgaaaaaag
     1741 gccctgccgt ggcgaatgcc atgaaagacg gtgcgccgac caaggctttg gaaggtttcg
     1801 cacgcggtgc gggcgcgaaa atcgaagact tgaccatcgt ccacgacggc aaacaggatg
     1861 tgtacgccta cgaatacgtc caaaccggca aaccgctggg cgaacttttg gaagacatta
     1921 tcaatcaagc cgttaagaaa ctgccgattc cgaaagtgat gcgttggggc agcagcacgt
     1981 ttaccttcgt gcgccctgtt cacgggctga ttgtgctgca cggcggcgac atcgtaaacg
     2041 tcagcgtttt gggtctgcaa agcagcaatc aaaccttggg acaccgcttc ttgtccaacg
     2101 gcgaaatcac cattgaaaac gccgacagct acgccgaaca aatgcgcggg caaggcaaag
     2161 tcgtcgcttc gtttgccgag cgcaaagccg cgattcagac ggcattggaa gggcaggcgc
     2221 gccgtctgaa cgcgaccgtt gccgccgatg aagcattgct ggacgaagta accgcgctgg
     2281 tcgaataccc cgttgttttg gaagccggtt ttgaggaaca cttcctcgcc gtgcctcaag
     2341 aatgcttgat tttgacgatg cagcaaaacc aaaaatactt cccgctgctc gaccaaaacg
     2401 gcaagctgat gaaccgcttc ctgctggtct ccaacctgca aaccgcagac ccgtcgcaca
     2461 tcatccaagg caacgaacgc gttttgcgcg cgcgcctgtc tgatgccgag ttcttctaca
     2521 aacaagacca aaaggcgact ttggaaagcc gcctgcccaa gctggcaaac gtggtttatc
     2581 acaacaaaat cggttcgcaa gccgaacgca tcgaacgcct gcaaagcatt gccgcccaca
     2641 tcgctaaagc gttgggcgca gatgccgccg ccgccgaacg cgccgcgcgt ctggcaaaag
     2701 ccgacttggt aaccgaaatg gtcggcgagt tccctgaatt gcaaggcacc atgggcaaat
     2761 actatgcccg tttggacggc gaaaccgaag aaatcgccga agccatcgag caacactacc
     2821 aaccgcgttt cgccggcgac aatctgccga atggcaaagt tgccaccgcc gtggcactgg
     2881 cggacaaact agaaaccttg gtcggcattt ggggcattgg tctgattccg accggcgaca
     2941 aagaccccta cgccctgcgc cgcgccgcct tgggtatttt gcggatgctg atgcagtacg
     3001 gtttggacgt gaacgaactg attcagacgg cattcgacag cttccccaaa ggtttgctca
     3061 acgaaaaaac gccgtctgaa accgccgact ttatgcaggc gcgccttgcc gtgttgctgc
     3121 aaaacgatta tccgcaagac atcgttgccg ccgtattggc gaaacagccg cgccgtttgg
     3181 acgacgtagt ggcgaaactg caagccgttg ccgcgttcaa acaactgccc gaagccgccg
     3241 cgctcgccgc cgccaacaaa cgcgtgcaaa atctgctgaa aaaagccgat gccgagttgg
     3301 gcgcggttaa cgaaagcctg ctgcaacagg acgaagaaaa agccctcttt gccgccgcgc
     3361 aaggcttgca gccgaaaatc gccgccgccg tcgccgaagg caatttccaa accgccttgt
     3421 ccgaactggc ttccgtcaag ccgcaagtcg atgccttctt tgacggcgtg atggtgatgg
     3481 cggaagatgc cgccgtaaaa caaaaccgtt tgaacctgtt gaaccgtttg gcagagcaga
     3541 tgaacgcggt agccgacatc gcgcttttgg gcgagtaacc gttgtacagt ccaaatgccg
     3601 tctgaagcct tcagacggca tcgtgcctat cgggagaata aattgcagcc tttagtcagc
     3661 gtattgattt gcgcctacaa cgcagaaaaa tatttcgccc aatcattagc cgccgtcgtg
     3721 aatcagactt ggcgcaactt ggagattttg attgtcgatg acggctcgac agacggcaca
     3781 cttgccattg ccaaggattt tcaaaagtgg gacagccgta tcaaaatcct tgcacacgac
     3841 cgcctcctga accgcaaaca gcaaaggcgc gattcccccg ccaacacatt caaacaccgc
     3901 ctgatccgcg ccttgaccaa aatcagcagg gaaagggaaa aacgtcggca aaggcgcgaa
     3961 cagttaatcg gcaagatcat tgtgcctttc caataaaagg agaaaagatg gacatcgtat
     4021 ttgcggcaga cgacaactat gccgcctatc tttgcgttgc ggcaaaaagc gtggaagcgg
     4081 cccatcccga tacggaaatc aggttccacg tcctcgatgc cggcatcagt gaggcaaacc
     4141 gggcggcggt tgccgccaat ttgcgggggg ggggtaatat ccgctttata gacgtaaacc
     4201 ccgaagattt cgccggcttc cccttaaaca tcaggcacat ttccattacg acttatgccc
     4261 gcctgaaatt gggcgaatac attgccgatt gcgataaagt cctgtatctg gatatagacg
     4321 tattggtcag ggacagcctg acgcccttat gggataccga tttgggcgat aactggcttg
     4381 gcgcgtgcat tgatttgttt gtcgaaaggc aggaaggcta caaacaaaaa atcggtatgg
     4441 cggacggcga atattatttc aatgccggcg tattgctgat caacctgaaa aagtggcggc
     4501 ggcacgatat tttcaaaatg tcctgcgaat gggtggaaca atacaaggac gtgatgcaat
     4561 atcaggatca ggacattttg aacgggctgt ttaaaggcgg ggtgtgttat gcgaacagcc
     4621 gtttcaactt tatgccgacc aattatgcct ttatggcgaa caggtttgcg tcccgccata
     4681 ccgacccgct ttaccgcgac cgtaccaata cggtgatgcc cgtcgccgtc agccattatt
     4741 gcggcccggc aaagccgtgg cacagggact gcaccgcgtg gggtgcggaa cgtttcacag
     4801 agttggcggg cagcctgacg accgttcccg aagaatggcg cggcaaactt gccgtcccgc
     4861 accgtatgtt ttcgacaaag cgtatgcttc aaagatggcg cagaaagctg tctgccagat
     4921 tcttacgcaa gatttattga cggggca
//
LOCUS       DAXHNP010000142         4910 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.142, whole genome shotgun sequence.
ACCESSION   DAXHNP010000142 DAXHNP010000000
VERSION     DAXHNP010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4910
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.142"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>4910
                     /locus_tag="ACFM5C_001752"
     CDS             <1..>4910
                     /locus_tag="ACFM5C_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HFC6069412.1"
                     /translation="VNAEGKLVNTGMIAATGENHAVSLHARNVHNSGTVASQDDANIH
                     SQTLDNSGTVLSSGQLTVRNLGRLKNHNNGTIQAARLDMSTGGLDNTGNITQTGSQAL
                     DLVSAGKFDNSGKIGVSDVPQTGLNPNPSVIPQIPSTATGSGSSTVLASKPGSNNPVS
                     PTAPAKNYAGGRIQTTGAFDNAGSINAGGQIDIAAQNGLENSGSLNAAKLRVSGDSFN
                     NTVKGKLQAHDLAVNTQTAKNSGHLLTLTGKIDNRELHNAGEIAANNLTLIHSGRLSN
                     DKKGNIRAAHLQLDTAGLHNAGNILADSGTVTTKNNLRNTGKVSVARLNTEGQTLDNT
                     HGHIEAETVNIQSQQLTNQSGHITATEQLTINSRNVDNQNGKLLSANQAQLAVSDGLY
                     NQHGEIATNRQLSIHDKNQNTLALNNADGTIQSAGNVSLQAKSLANNGTLTAGNKLDI
                     ALTDDFVVERDLTAGKQLNLSIKGRLKNTHTLQASHTLKLNAGNIDNQVTGKIIGGEQ
                     TDITSEQHVDNRGLINSDGLTHIGAGQTLTNTGTGKIYGNHIALDAQILLNREETTEG
                     STKAGAIAARKRLDIGAKEIHNQEGALLSSEGIFAVGNRLDEQHHAAGMADTFVNGSA
                     GLEVQGDALMSVRNMQNINNHFKTETYLAKAEKQVRDYTVLGQNTYYQAGKDGLFDNS
                     QGQKDQTTATFHLKNGSRIEANQWHVRDYHIETYKERIIENRPAHITVGGDLTASGQN
                     WLNKDSRIVVGGRIITDDLNQKEITNQSTTGKGRTDAVGTQWDSVTKKGWYSGRKRQR
                     RTERNHTPYHDTQLFTHDFDTPVSVIQQNAASPSFQPAASAIKLIDGVSTAAVNGQRI
                     HTGNVVSLNNATVTLPNSSLYTTHPDNKGWLVETDPQFADYRRWLGSDYMLQQLQLDT
                     NHLHKRLGDGYYEQKLVNEQIHQLTGYRRLDGYRSDEEQFKALMDNGLTAAKTFGLTP
                     GIALSAEQVARLTSDIVWMENQTVTLSDGSTQTVLVPKVYALARKGDLNTSGGLISAE
                     QVLLKLQNGNLTNSGTIAGRQAVLIQARNINSNGNIQADQIGLKAEKSINIDGGQVQA
                     GRLLTAQAQNINLNGTTQTSGNERNGNTAIDRMAGINVVGSHTEQVDNRTSDGILSLH
                     AGNDINLNAATVSNQVKGGTTQITAGNNLNLGTIHTEHREAYGTLDDENHRHVRQSTE
                     VGSSIRTQNGALLRAGNDLKIRQGELEAEEGKTVLAAGRDVTISEGRQITELDTSVSG
                     KSKGILSSTKTQDRYRFSHDEAVGSNIGGGKMIVAAGQDINVRGSNLISDKGIVLKAG
                     HDIDISTAHNRYTGNEYHESKKSGVMGTGGLGFTIGNRKTTDDTDRTNIVHTGSIIGS
                     LNGDTVTVAGNRYRQTGSTVSSPEGRNTVTAKSIDVEFANNRYATDYAHTQEQKGLTV
                     ALNVPVVQAAQNFIQAAQNVGKSKNKRVNAMAAANAAWQSYQAAQQMQQFAPSSSAGQ
                     GQNNNQSPSISVSITYGEQKSRNEQKRHYTEAAASQIIGKGQTTLAATGSGEQSNINI
                     TGSDVIGHAGTTLIADNHIRLQSAKQDGSEQSKNKSSGWNAGVAVKIGNGISFGITAG
                     GNIGKGKEQGGSTTHRHTHVGSTTGKT"
BASE COUNT         1582 a         1251 c         1096 g          981 t
ORIGIN      
        1 gtgaatgctg agggtaaact ggtcaacaca ggcatgattg cagcgacggg agaaaatcat
       61 gcggtttcac ttcatgcccg caatgttcat aatagcggta cggttgcctc acaggatgat
      121 gccaatattc acagccagac gctggacaat tcaggtacgg tcttatcctc aggtcaattg
      181 actgtccgta atttaggccg tctgaaaaac cataacaacg gtacgatcca ggctgcacgc
      241 ttagatatgt caacaggtgg tttggataac acaggtaata ttactcaaac aggttcacaa
      301 gcattggatt tggtatctgc aggcaaattc gataacagtg gcaagattgg tgtaagtgac
      361 gttccacaga ccggtttgaa tcccaatcca tcagtcatac cacagattcc gagtactgca
      421 acaggttcag gcagcagcac tgtcttggca tctaagcctg gttcaaacaa tcccgtttca
      481 cctacagcac ctgcaaaaaa ctacgccgga ggacgcattc aaacaacagg agcatttgac
      541 aatgcaggat caatcaatgc aggtgggcaa attgacattg ccgcccaaaa cggtttggaa
      601 aattcgggta gtctgaatgc ggctaaacta cgagtatcag gcgattcatt taacaatacg
      661 gtaaaaggca aactccaggc acacgatctg gctgttaaca ctcaaactgc taaaaacagc
      721 ggtcacttat taactctaac cggcaagatt gacaaccgtg aactgcataa tgccggagaa
      781 attgccgcca acaatctgac actcattcat tcgggccgct tgagcaatga taaaaaaggc
      841 aatattcgag ctgcacattt acagcttgat accgccggtt tacataatgc aggtaacatt
      901 cttgccgata gtggaaccgt taccaccaag aataatcttc gcaatacagg aaaagtttct
      961 gttgcacgac taaataccga aggtcagact ctagataata cgcacggaca tatagaggct
     1021 gaaacggtta acatccaaag tcagcaactg actaaccaaa gtggccatat tactgctacc
     1081 gaacaactga ctatcaatag tcgaaatgta gacaaccaaa acggcaaact cctatctgca
     1141 aaccaagcac aattagctgt ttcagacggc ctatacaacc aacatggtga aattgccacc
     1201 aaccggcagt tgtctattca cgataaaaat caaaacactt tggcgttaaa caatgcggat
     1261 ggcacgattc aatctgccgg taatgtatcg ctacaagcca aatcactcgc caacaatggc
     1321 acattaacag ccggtaacaa actggatatt gctttgacgg acgatttcgt cgtagagcgc
     1381 gacctcactg caggcaaaca attaaatcta agcataaaag gccgtctgaa aaatacccat
     1441 accctacaag caagccatac gctcaaactc aatgccggca atatagataa ccaagttaca
     1501 ggcaaaatta ttggtggaga acaaacggac atcacatccg aacagcatgt tgacaacagg
     1561 ggcttgatca acagcgacgg tttgacccac atcggtgcag gtcaaaccct gaccaacacc
     1621 gggacaggca aaatctatgg caaccatatt gccctggacg cgcaaatact gcttaaccgg
     1681 gaagaaacga cggaaggcag taccaaagcg ggggcaatag ctgcaaggaa acgtttggat
     1741 attggagcga aagagattca taaccaagaa ggtgccctac tatccagcga aggtattttt
     1801 gccgtaggta atcgactgga tgaacaacat catgcggcag gcatggccga tacctttgtt
     1861 aatggcagtg ccggtttgga agtacaaggt gatgcattga tgtccgttcg gaatatgcag
     1921 aatatcaata atcactttaa aacagagaca tacttagcca aagcagaaaa gcaagttcgt
     1981 gactacaccg tactggggca aaatacctac tatcaggcag gaaaagacgg tttattcgac
     2041 aactcgcaag gacaaaaaga ccaaactact gctacgttcc atttaaaaaa tggttctcgt
     2101 attgaggcca accaatggca tgtccgagac taccacatcg agacttataa agaacgcatc
     2161 atcgaaaacc ggccggcaca cattactgtg ggcggtgatt tgactgcctc aggtcaaaat
     2221 tggctgaaca aagacagccg gattgtagta ggcgggcgta ttatcactga tgatttaaac
     2281 cagaaagaaa ttaccaatca aagtacaaca ggcaaaggtc gcacagatgc tgtcggcaca
     2341 cagtgggatt cagttacaaa aaaaggatgg tacagcggta gaaaaagaca acgccgtact
     2401 gaaagaaacc atactcctta ccatgatacc caactattta cccacgactt cgacacgcct
     2461 gtatccgtca tccaacagaa tgccgcctcc ccttcctttc aacccgctgc atctgcaatc
     2521 aaactgattg acggagtatc cacggcagcc gtcaatggtc agcgcatcca taccggtaat
     2581 gtggtctcgt taaataacgc tactgttact ctgcctaaca gcagcctcta taccacccat
     2641 cctgacaata aaggctggtt ggttgaaacc gatcctcaat ttgcagacta ccgccgctgg
     2701 ttgggcagcg actacatgtt gcaacaactg caattggaca ccaatcatct acacaaacgg
     2761 ctaggcgacg gctactacga acaaaaactt gttaatgaac aaatccatca gttaacaggc
     2821 taccgccgac tcgacggcta caggagtgat gaagaacaat tcaaagctct gatggacaac
     2881 ggccttactg ctgccaaaac attcggtctc accccaggta tcgccttgag tgcagagcaa
     2941 gttgcccgct taacttcaga tatcgtttgg atggaaaatc aaaccgtcac cctgtctgac
     3001 ggttcgactc aaaccgtact ggttcctaaa gtctatgccc tggcgcgcaa aggtgatctc
     3061 aatacctccg gtggcctgat tagtgccgaa caagtcttac ttaaactgca aaacggcaac
     3121 ctgactaaca gcggtaccat tgcggggcga caggccgtac tcatccaggc acggaatatt
     3181 aacagcaacg gtaacattca agccgaccaa atcggcttaa aagctgaaaa aagtatcaat
     3241 atcgacggcg ggcaggtaca agcaggcaga ctgctgactg cccaagcgca aaatatcaac
     3301 cttaacggta caacccaaac ttccggtaat gaacgtaacg gcaataccgc catcgatcgt
     3361 atggccggca ttaacgtggt cggaagccat actgagcaag tagataacag aacttcagac
     3421 ggcatcctat ccctgcatgc cggcaacgat atcaacctca atgcggccac cgtctctaac
     3481 caagttaaag gcggcactac ccaaattacc gccggcaata atctcaacct cggcaccatt
     3541 cataccgaac atcgcgaagc ctatggtaca ttagatgacg agaaccatcg ccatgtccgc
     3601 caaagtaccg aagtcggcag cagtatccgc acgcaaaacg gcgcactgct tagagccggt
     3661 aacgacttaa aaatccgcca aggcgaactg gaggccgaag aaggcaaaac cgtccttgcc
     3721 gcgggacgtg atgtcactat cagcgaagga cgccaaataa ccgaactgga tacctcggta
     3781 agcggaaaaa gcaaaggcat cctttccagt accaaaacac aggatcgcta ccgcttcagt
     3841 catgatgaag cagtcggcag caacatcggc ggcggcaaaa tgattgttgc agccgggcag
     3901 gatatcaatg tacgcggcag caaccttatt tctgataagg gcattgtttt aaaagcagga
     3961 cacgacatcg atatttctac tgcccataat cgctataccg gcaatgaata ccacgagagc
     4021 aaaaaatcag gcgtcatggg tactggcgga ttgggcttta ctatcggtaa ccggaaaact
     4081 accgatgaca ctgatcgtac caatattgtc catacaggca gcattatagg cagcctgaat
     4141 ggagacaccg ttacagttgc aggaaaccgc taccgacaaa ccggcagtac cgtctccagc
     4201 cccgaggggc gcaataccgt cacagccaaa agcatagatg tagagttcgc aaacaaccgg
     4261 tatgccactg actacgccca tacccaggaa caaaaaggcc ttaccgtcgc cctcaatgtg
     4321 cccgttgtcc aagctgcaca aaacttcata caagcagccc aaaatgtggg caaaagtaaa
     4381 aataaacgcg ttaatgccat ggctgcagcc aatgctgcat ggcagagtta tcaagcagcc
     4441 caacaaatgc aacaatttgc tccaagcagc agtgcgggac aaggtcaaaa caacaatcaa
     4501 agccccagta tcagtgtgtc catcacctac ggcgaacaga aaagtcgtaa cgagcaaaaa
     4561 agacattaca ccgaagcggc agcaagtcaa attatcggca aagggcaaac cacacttgcg
     4621 gcaacaggaa gtggggagca gtccaatatc aatattacag gttccgatgt catcggccat
     4681 gcaggtacta ccctcattgc cgacaaccat atcagactcc aatctgccaa acaggacggc
     4741 agcgagcaaa gcaaaaacaa aagcagtggt tggaatgcag gcgtagccgt caaaataggc
     4801 aacggcatca gttttggaat taccgccgga ggaaatatcg gtaaaggtaa agagcaaggg
     4861 ggaagtacta cccaccgcca cacccatgtc ggcagcacaa ccggtaaaac
//
LOCUS       DAXHNP010000143         4876 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.143, whole genome shotgun sequence.
ACCESSION   DAXHNP010000143 DAXHNP010000000
VERSION     DAXHNP010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.143"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(92..574)
                     /locus_tag="ACFM5C_001753"
     CDS             complement(92..574)
                     /locus_tag="ACFM5C_001753"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6069413.1"
                     /translation="MTQQRQLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYS
                     CASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNIRTG
                     EIRHTNSCYFTMVAVKDGKPVPVPPLEILTDRQRCRYEKAKKRRDISLQASEDMSCGC
                     "
     gene            complement(727..888)
                     /locus_tag="ACFM5C_001754"
     CDS             complement(727..888)
                     /locus_tag="ACFM5C_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069414.1"
                     /translation="MSGQPEKHHTSPIEDERKNPVYRMGRAVAGFMLVVWVAVLALVF
                     FLVFRFWLS"
     gene            complement(962..1423)
                     /gene="recX"
                     /locus_tag="ACFM5C_001755"
     CDS             complement(962..1423)
                     /gene="recX"
                     /locus_tag="ACFM5C_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HFC6069415.1"
                     /translation="MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLN
                     EFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQQGIDEETSRNLLPDRSSEKQTA
                     IDVLRKKFKHPAADLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDGC"
     gene            complement(1498..2208)
                     /locus_tag="ACFM5C_001756"
     CDS             complement(1498..2208)
                     /locus_tag="ACFM5C_001756"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HFC6069416.1"
                     /translation="MNAAIEHVQAVAFDLDGTLCDSVPDLAAAAEAMLEQLGMKPLPA
                     KVVESYVGDGIGKLVHRVLTNDRDREADSELWEKGFVSYMKYYRDHLSVFTRPYPETE
                     AGLALLKSLGIPLAVITNKNEILAVELLKQLGLADYFSLILGGDSLPEKKPSPLPLRH
                     AAEVLGIDVANMVMVGDSRNDIIAAKAAGCLSVGVTFGYGDMTLLSQDDATRPDWIIG
                     SLPEIYENLQPQKNKDEE"
     gene            2615..3880
                     /locus_tag="ACFM5C_001757"
     CDS             2615..3880
                     /locus_tag="ACFM5C_001757"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HFC6069417.1"
                     /translation="MSEALAKETLNPFEIARKQVKTACDRLKTDPAVYEILKSPTRVL
                     EVNFPVKLDDGTVKTFTGYRSQHNNAVGPYKGGVRFHPGVNLDEVKALSIWMTIKCCV
                     AGIPYGGGKGGVTLDPRDYSEAELERIARAYSEAISPLIGEKIDIPAPDVNTNGKIMS
                     WMVDAYENVVKHSAPGVFTGKPVEFGGSLARTEATGYGVNLAAVQALEKLGKDVKGAT
                     YAIQGFGNVGYHTGYYAHQSGAKVVAVSTVDVAIYNENGLDMEALFKEFQEKGFITNE
                     ASYGKEITNAELLALDVDVLAPCALENQLTSENAGKVRAKIVVEGANGPTTPEADVIL
                     RQNGVLVVPDILANCGGVVVSYFEWVQNLQGYYWEFDEVQEKETVVLRRAFRDIWNLA
                     QEYDVDLRTASYMMSIRRVEKAMKLRGWY"
     gene            complement(3937..4743)
                     /locus_tag="ACFM5C_001758"
     CDS             complement(3937..4743)
                     /locus_tag="ACFM5C_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HFC6069418.1"
                     /translation="MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGE
                     FPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQ
                     PTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEI
                     VPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDST
                     DDKGEVDIIPLRQGFWKANVEHKADFPDQSVCQKQANYSTLTFQIGHSHH"
BASE COUNT         1050 a         1107 c         1435 g         1284 t
ORIGIN      
        1 aatttaatcc actatatttg cttgatttca tccgtttgca atggaaacgg atggcgcgat
       61 gtgcctgtct ttcagacggc atagtccgcc gtcagcagcc gcaggacatg tcttcagagg
      121 cttgcaggct gatgtctctg cgttttttgg ctttttcgta gcggcagcgt tggcggtcgg
      181 tcaggatttc cagcggaggg acagggacgg gtttgccgtc tttgaccgca accatcgtga
      241 agtagcagct gttggtgtgg cggatttcgc cggtgcggat gttttgtgct tcgacacgga
      301 tgccgatttc catcgaggtg cgtcccgtgt agttgacagc ggcgtaaaag gtaaccaaat
      361 cgccgatgtg gatgggttct ttaaacagga ctttgtcaac cgacagggta acgcaataat
      421 tgccgctgta acggctggcg caggaatagg cgacttggtc gagcaggagc aggagttcgc
      481 cgccgtgtac gttgccgctg aaattggcgg tgtccggcat catcagttcg gacataatga
      541 gttcgtggga aggcagttgg cgttgttgtg tcatggtgta cctgttttaa gaaagggtgt
      601 tttgaaatgg gtgcggggaa attttaggga atggggaagt ggaattcaag ctaaaaaaag
      661 ctatgatggg atagtctgcc gaaatggacc gccgatgccg tctgaagcct tcagacggca
      721 ttttgtttag gaaagccaaa aacggaagac caggaaaaac acgagtgcca atacggcgac
      781 ccaaacgacg agcatgaatc cggcaactgc ccgtcccata cggtaaaccg ggtttttgcg
      841 ttcgtcttcg atgggggagg tgtggtgttt ttcgggttgt ccggacattt tgttctcaat
      901 cggaaaagtt ggaaacgggc gtaaggttat gttgccgtgc aaaaagattc aagaaggaag
      961 gtcagcagcc gtcttcccaa ttttcgtccc aagcgtgttt caatgccgtc tgaacggtat
     1021 cggcatcgaa tccgcgatag gcgaggaaac gcgcctgttt ttgtttttct ttaaggtcgg
     1081 cggcggggtg tttgaatttt ttacgcaaca cgtctatggc ggtctgtttt tcgcttgagc
     1141 ggtcgggaag caggttgcgg ctggtttctt catctatgcc ctgttgcgcc aaagcctgtt
     1201 tcagcctcaa tgaaccgtgt ttgcggcttt tgctgcggat ataggcttcg gcatagcgca
     1261 aatccgactg ccagttgcgt tcggcaaatt cgtttaacac gttttccaac tcttcttcgc
     1321 tttcggcgtg cggtgcaagt ttgcgtttca gaccgatgcg gctgacttct tggcgcgaga
     1381 ggatgtccat cgcgcgggcg cgtagggatt tttgcggttt catggcggcg gtttcggcgt
     1441 ggggcaggtt tcagacggca tgggaaacgg attccgatgc cgtctgaaca gattgtttta
     1501 ttcttcgtct ttatttttct gcggttgcag gttttcgtaa atttcgggca gcgagccgat
     1561 aatccagtcg gggcgggtcg catcgtcttg cgagagcagc gtcatatcgc cgtaaccgaa
     1621 ggtaacgccg acgctcaggc agccggcggc tttggcggcg atgatgtcgt tgcgcgagtc
     1681 gccgaccata accatgtttg caacatcgat acccaaaact tcggcggcat gccgcagcgg
     1741 cagggggctg ggttttttct cgggcaggct gtcgccgccg agtatcaggc tgaagtagtc
     1801 ggcaagtccg agctgtttca acagttcgac ggcaaggatt tcgtttttgt tggtaatgac
     1861 tgccagcggg atgcccaaag atttgagcaa tgccagcccg gcttcggttt cgggataggg
     1921 gcgggtgaag acgctcaaat ggtcgcggta gtatttcata taggatacga aacctttttc
     1981 ccacagttcg gaatcggctt cgcggtcgcg gtcgttggtg aggacgcggt gaaccagttt
     2041 gccgatgccg tcgcccacat agctttcgac cacttttgca ggcagcggtt tcataccgag
     2101 ttgctccaac atcgcttctg cggcggcggc aaggtcgggg acggaatcgc acagtgtgcc
     2161 gtccaaatcg aaggcgacgg cttggacgtg ttcgatggct gcattcataa tctgatttcc
     2221 tgtcgggttg aaagggttta ttttaacatc gtttgcacag ggcttctaat gtatagattg
     2281 ttaacaatcg caacaggttt tgcaggcggt gttttcggat ttcggggcgg aatcgggcaa
     2341 gggtttgaaa tcccggcgat gttccaatta aatttttaaa aaataaaagg atgcctatat
     2401 ctttatttaa tttgacattt atttttcgga cgcgcgcgct gctttttcag gcggagtccg
     2461 ggctgattcc gtgcggcttg aaaaataaaa tcatatatag attaatcaaa tcgggcttat
     2521 gccgactaca cgctattaca ttttgtcggg aaattggtta tagtaatgag cgaaatgcac
     2581 gcccctgaaa atctttttgt gaaaaggaag caaaatgtct gaagcccttg caaaagaaac
     2641 cctcaatccg tttgaaatcg cgcgcaaaca ggtcaaaacc gcctgcgacc ggctgaaaac
     2701 cgatccggcc gtttatgaaa tcctgaagag tccgacccgc gtgttggaag tcaatttccc
     2761 cgtcaaactc gacgacggca cggtcaaaac cttcacgggc taccgttcgc aacacaacaa
     2821 cgccgtcggc ccctataaag gcggcgtgcg cttccatccc ggtgtgaatc tggacgaagt
     2881 caaagccctg tcaatttgga tgaccatcaa atgctgcgtg gccggcattc cttacggcgg
     2941 cggcaaaggc ggcgttacct tggatccgcg cgattattcc gaggcggaac tggaacgcat
     3001 cgcccgcgct tattccgaag ccatttctcc gctcatcggc gaaaaaatcg atattcccgc
     3061 ccccgatgtg aataccaacg gcaaaattat gtcgtggatg gtggatgctt atgaaaacgt
     3121 ggtgaaacat tccgcgccgg gcgtatttac cggaaaaccg gttgagttcg gcggctcttt
     3181 ggcgcgtacc gaggctaccg gttacggcgt gaacctcgcc gccgtccaag ctttggaaaa
     3241 actgggcaag gacgtgaaag gcgcgactta cgccatccaa ggcttcggta atgtcggtta
     3301 ccacacaggt tattacgcgc atcaatccgg cgcgaaagtt gttgcggttt ctactgttga
     3361 cgttgccatc tacaatgaaa atggcttgga tatggaagcc ctgtttaaag agttccaaga
     3421 aaaaggcttc atcaccaacg aagccagtta cggcaaagaa attaccaacg ccgaactttt
     3481 ggctttggat gtggacgtac tcgccccttg cgcgttggaa aaccaactga cttccgaaaa
     3541 cgccggtaaa gtccgcgcga aaatcgtggt cgaaggcgcg aacggcccga ctacgcccga
     3601 agccgacgtt atcctgcgtc aaaacggcgt attggtcgtg cctgatattt tggcgaactg
     3661 cggcggcgtg gtggtatctt attttgaatg ggtacaaaat ctgcaaggct actactggga
     3721 gtttgacgaa gttcaggaaa aagaaaccgt cgtcctgcgc cgtgcgttcc gcgatatatg
     3781 gaacttggcg caagagtatg atgtcgattt gcgaaccgcg tcttacatga tgagtatccg
     3841 ccgtgttgaa aaagcgatga aactgcgcgg ttggtattga tgtttgaaca aaaaatgccg
     3901 tctgaagcct tcagacggca ttttgtgcgg gcgggattaa tggtgcgaat ggccgatttg
     3961 gaaggttaaa gtcgagtagt tcgcctgttt ttggcacacg ctttgatcgg ggaagtcggc
     4021 tttgtgttcg acattggctt tccagaagcc ttggcgcaag gggatgatgt ccacttcgcc
     4081 tttgtcgtct gtgctgtcgg agaaagcctg tgcttcggtt ttgtgcgttt tgctgcggtc
     4141 gctggtgtcg aagccgtcaa aggtggcggt aacggtggca ttgggcagcg gttcgccacg
     4201 gaacagaacg cggactttga agcgttcgcc tacgtgaatg ttggcgggat tgtccagcgg
     4261 gacgatttcc aagttttgtc cgaccggttt ggtgatgatg gcggtgtccg cgctttcgtg
     4321 tccgacgttg acgatgtttt tgccgaacat tcgggtttgt tcgcaatagc ttgcgtcagg
     4381 catttctttg atgcccgcct gtttccagcc tgctttgttt tttgaccaga aagtaggctg
     4441 atattcggcg atgacgaggt aactgccgtc cttaacggga cggttgcttc ggtactggta
     4501 gttgtatgtg ccgcgttgaa tcatgttttc cttgcctttt tcggtaacca gctgcatcgg
     4561 tttgctgaag atgtgcaggc ggtctttggc gatgggttcg agttcgggaa attcgccgta
     4621 gcccaagtcg gctttaaggt attcgccgcc gtgcgtgtgg gcggtttcga cccagacgcg
     4681 gtgggcgtgg gcggatgtgg caaatagggc ggaaacggcg agcagtgtca atgttttctt
     4741 catggtgcag cctttgtctc gtgtgggtta aagattttgt tatgttataa caaaataggt
     4801 atcgtgtgaa gacggatttg ctgtctgaaa actgtctttt tgtatagtgg attaacaaaa
     4861 accagtacgg cgttgc
//
LOCUS       DAXHNP010000144         4860 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.144, whole genome shotgun sequence.
ACCESSION   DAXHNP010000144 DAXHNP010000000
VERSION     DAXHNP010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.144"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(209..937)
                     /gene="rmpM"
                     /locus_tag="ACFM5C_001759"
     CDS             complement(209..937)
                     /gene="rmpM"
                     /locus_tag="ACFM5C_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding outer membrane protein
                     RmpM"
                     /protein_id="HFC6069419.1"
                     /translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
                     GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPAPVVVVEQAPQYVDETISLSAK
                     TLFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTDFMGSDKYNQALSERRAYV
                     VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPD
                     RRVDVKIRSIVTRQVVPAHNHHQH"
     gene            1301..2251
                     /locus_tag="ACFM5C_001760"
     CDS             1301..2251
                     /locus_tag="ACFM5C_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HFC6069420.1"
                     /translation="MKLQQLKYALEVYQHNLNVSEAAEALFTSQPGISKQIKLLEEEI
                     GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
                     QARYALPLIVADFVKRYPKVNLTIKQGSPAAIARMVTSGEADLAIVTERIDDHPELGK
                     LPCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
                     QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
                     RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
     gene            complement(2364..3098)
                     /gene="fnr"
                     /locus_tag="ACFM5C_001761"
     CDS             complement(2364..3098)
                     /gene="fnr"
                     /locus_tag="ACFM5C_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HFC6069421.1"
                     /translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
                     RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
                     HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTHFFRMMSREIVRDQGVMLLLGNMRA
                     EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
                     SVEHKHIKILNLQVLKKMVSGCSHAI"
     gene            3301..4722
                     /gene="hemN"
                     /locus_tag="ACFM5C_001762"
     CDS             3301..4722
                     /gene="hemN"
                     /locus_tag="ACFM5C_001762"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFC6069422.1"
                     /translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
                     DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
                     YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
                     EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
                     FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTAAV
                     PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
                     CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
                     LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
                     NIAMVFDYHLRHKETKAKYSQTV"
BASE COUNT         1239 a         1329 c         1177 g         1115 t
ORIGIN      
        1 cggcaatggg acacaaacct gaatctgaat ccgaacctgc accccgattc tgacgatagc
       61 cgtttcagaa aaccacccaa aaaaacaaac cccgcaaaag cgggggtttg tttcacatca
      121 tcgatgccga ccgacgtttc acgaatattg caacagtacc tggtacaaaa tccactaacc
      181 tcatgcatcg gcaagatatt gcctagcctt agtgttggtg atgattgtgt gccggcacaa
      241 cctgacgggt tacgatgctg cggattttca catccacacg gcggtcaggt tcgatacatg
      301 caatcagagc ctcacgtttt ttggctttag agactttcgc acccagtttg gcaacttcgg
      361 cttcacaaac ttgagtcatt tgcgcttgag attcgcccaa gccgacagca gaaattctag
      421 aaacaggtac gccgttgctg accaggttgt ttgccactac gtatgcgcgg cgttcggaca
      481 gggcctgatt gtatttgtca gaacccataa agtcggtatg gccttcgacg cggacagatt
      541 ggatattggt ttgacccagg cgttgcgcca atactttcag gttgtcttga gcttcggcgc
      601 gcaatgaatc cttatcgaaa ccgaacaggg ttttggcaga cagggaaatg gtttcatcaa
      661 catattgcgg agcctgctcc acaacgacga caggagcggg tgcgggttcg ggttctggct
      721 cgggttcggg ggcagcaacc gcatcgccgc attctacgcg accttggctt gctttatcaa
      781 agtaggcgtt tttccagcat tcgccatagt tgttgcgtac gatttcgttc gactggccgc
      841 ttacggtgta accctgaacg gacgcctcgc ccgcaacagc agtgccggaa gcgagcaatg
      901 caacgaataa tgcgcttaat ttcagctgtt tggtcatttt attccctcat taaatttgta
      961 cagcagatac agaagcaact gctgaattgc caacatacag gccgctgtag aaacatggcg
     1021 gcaaatcgga tatttcagtc tccactataa agaagcaggg ggaggactgt caatactcaa
     1081 cgcctgaaaa caaccgtaaa acagcctgtt tcctgatagt ctatcatgcc gaaaaatcaa
     1141 ttccgtgtca ttactttagg gggatttttt ccatatcgca cgattgccgt tgcacaaaaa
     1201 caacaaacac aacggcaaag ccccataccg taccggcaag aaaatatgat aaattataaa
     1261 caatgttcag ccacccgaca cagacccaca ccgacccgcc atgaaattac aacaattgaa
     1321 atacgcctta gaagtttacc agcacaacct gaacgtttcc gaagcggccg aagccttgtt
     1381 tacttcgcaa cccggcatct ccaaacaaat caaattgctg gaagaagaaa tcggcattca
     1441 gatttttatc cgcagcggca agcgcgtggt ttcggtctcg cagccgggca aggtggtttt
     1501 ggatattgcg gaacgtattt tacgcgatgt acagaacatt aaaaatatcg gcagcgagtt
     1561 taccggacag gacagcggtt cgctgacggt tgccacgacg catactcagg cacgctatgc
     1621 cctacccttg attgttgccg attttgtgaa acgctatccg aaagtcaacc tgaccatcaa
     1681 acaggggagc cctgccgcca tcgcacgtat ggttacctca ggcgaggcgg acttggcgat
     1741 tgttacggaa cggatagacg accatcccga actgggaaaa cttccctgct atgactggac
     1801 tcatgcggtt atcgtaccga acgaccaccc cttgctcgaa tgcagaaacc ccctccgcat
     1861 tgaagatttg gcgaggtttc cgctgattac ttatgaattt gcattcaatg cgggcagcag
     1921 catcgcgcgg gcattttcca aagcccgttt ggaacagccg gatgtcgcat tggcggcggc
     1981 ggatacggac gtattgaaga cttatgtgcg cttgggtttg ggcgtgggac tgatggcgaa
     2041 aatggcgtac aacccggata cggacggcga tttgcagctt gtggatgcgg cacacctgtt
     2101 cgagccgtcg ccgacgtgga ttgctttgcg cagcgatact tatttgcgcg gatatgccta
     2161 cgactttatc caagcgtttg cgccgcacct gacacgcgag aaggtggata ggattctgta
     2221 cacgcccatc agcgaggatt tttcgattta ggcggctgcc ggttttcaga cggcactttg
     2281 cggcagatac aacaaacagg acagatgttt tcgtctgccc tgtgtttatt gagaatgccg
     2341 tctgaaatgt tcgtacgggt taatcaaatg gcgtgcgaac aaccggatac catcttcttc
     2401 aacacctgca gattgaggat cttgatgtgt ttgtgttcga cggaaatcaa tccttcctga
     2461 tgaaatttag ataatgtgcg gctgacggtt tcaagtttca gcccgagata actgccgatt
     2521 tcttcgcggg acattcttaa gatgaagtcg ttggcagcaa aacctcggga ataaaggcgt
     2581 tgggaaaggt tcaacagaaa ggcggcaatc cgctcttcgg cgcgcatatt gcccaacagc
     2641 agcataacac cttggtcgcg cacgatttca cgactcatca tgcggaaaaa gtgggtacgc
     2701 aggctgggga tattctgccc cagttcttcg atgtgggtaa acggcagttc gcacacttcg
     2761 ctgtcttcca aggcgaccgc gtcgcaactg tgcacatggg aacagatgcc gtccatgccg
     2821 atgagttcgc ccgacataaa gaaacccgtt acctgatcgc ggccgtcctg actggcgacg
     2881 gttgttttga agaagcccga acggatggca aagagcgagg taaaggcttc gccgacacag
     2941 aacaggtatt cgcccttttt caggcggcgg ctttgacgga tgacggcatc gagttggctg
     3001 agctcgttgg gcagcagccc gacaggcagg cagagttccc gcaaagaaca ggaagaacac
     3061 agcgttttca tctgatgtgt agtattatgc gaagccatac cgtacctttt tgtgcgcttt
     3121 gccccatcat gattatagtg gattaaattt aaaccagtac ggcgttgcct cgccttgtcc
     3181 ttatttaaat ttaatccact atatgtgctt attgacacat atcaagacag gtttatcata
     3241 ctgtggcatt ctaccaaact atccaaaatt tgactaacat cataaaaccg cacacacacc
     3301 atgaaaatca ttcagataca gaacaatcac aatgtaaacg atgaccgccc cgagtttgac
     3361 cgcgcgctga ttgccagcct gcccgccagc ggcccgcgct acacttccta ccctaccgcc
     3421 gaccgtttcc atgacggttt ccgcgaaggc gaatatatca aagctttaca tttgcgcggt
     3481 atgggcgcgt taaacaaacc gctttccctt tacattcaca ttccgttctg caacaccatc
     3541 tgctactact gcggctgcaa caaaatcatc accaaagaca aaagccgcgc cgatgcctac
     3601 atcgaatatc ttgaaaaaga aatggaactg ctcgctccac atctgaacgg acggcaccag
     3661 cttgcccaac tgcacttcgg cggcggcacg ccgacctttt tgagcgacga acagatcgaa
     3721 cgtgtcttcc gcatgatacg caaacatttc gagttaatcc ccaccggcga atactccatc
     3781 gaaatcgacc cgcgcaaagt cagccgcgac accgtcctca tgctcggcag actcggcttc
     3841 aaccgcatga gcatcggcat tcaggatttc gaccccaaag tgcaggcggc ggtcaaccgc
     3901 atccaaagtt acgaagaaac caaagaagtc atcgatgcgg cgcgcgaagc ggggttcaaa
     3961 tccgtcagcg tcgatttgat ttacggcctg ccgcaccaga cttcggaaag catcaaaacc
     4021 accatcgata ccgttttgtc gctcgatccc gaccgcctcg ccctttatca ctacgcccac
     4081 ctgccgcacg tgttcaaacc gcaacgccgc atcgataccg ccgccgttcc cgacagcgaa
     4141 gagaagctcg atatgctgca atactgcgtc caaaccctaa ccgaacgcgg ttacgtcttc
     4201 atcggcatgg accatttcgc caaacctgac gacgaactct ccatcgccct caaagaaggc
     4261 ttcctccagc gcaacttcca aggctattcg acctacgcgg attgcgattt ggtcgccatc
     4321 ggcgtgtcgt ccatcggcaa aatcggcagc acctattccc aaaacgaacg cgacatcgat
     4381 gcctactatg ccgccatcga cgaaggcaga ctgcccatca tgcgcggtta tcagctcaat
     4441 caggacgaca tcctgcgccg caacatcatt caggatttga tgtgccgctt cgcgctcgac
     4501 tatcggattt acgaaagtat gttcggcatc ccgttcgacc gctacttcaa agacgaactg
     4561 gcggatttgg aaaaactcgc cggtttggga ttggtgcgcc tgaacagcca cgggctgacc
     4621 gttaccccga aaggacgctt cctcatccgc aacatcgcca tggtcttcga ttaccacctg
     4681 cgccacaaag aaaccaaggc gaaatattcg caaacggtgt gattgcgtct aacgtacaaa
     4741 tgccgtctga aaggcttttt cagacggcat tttgctgccg gcaggataag tgttttcaag
     4801 aacaggcggc ggcatatcat aacgttccgc acctttgtgt ccgaccgttc cgaaaccaag
//
LOCUS       DAXHNP010000145         4841 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.145, whole genome shotgun sequence.
ACCESSION   DAXHNP010000145 DAXHNP010000000
VERSION     DAXHNP010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4841
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.145"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            1..671
                     /locus_tag="ACFM5C_001763"
                     /pseudo
     CDS             1..671
                     /locus_tag="ACFM5C_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_153708080.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(807..2210)
                     /locus_tag="ACFM5C_001764"
     CDS             complement(807..2210)
                     /locus_tag="ACFM5C_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFC6069423.1"
                     /translation="MTLLNLMIMQDYGISVCLTLTPYLQHELFSAMKSYFSKYILPVS
                     LFTLPLSLSPSVSAFTLPEAWRAAQQHSADFQASHYQRDAVRARQQQAKAAFLPHVSA
                     NASYQRQPPSISSTRETQGWSVQVGQTLFDAAKFAQYRQSRFDTQAAEQRFDAAREEL
                     LLKVAESYFNVLLSRDTVAAHAAEKEAYAQQVRQAQALFNKGAATALDIHEAKAGYDN
                     ALAQEIAVLAEKQTYENQLNDYTDLDSKQIEAIDTANLLARYLPKLERYSLDEWQRIA
                     LSNNHEYRMQQLALQSSGQALRAAQNSRYPTVSAHVGYQNNLYTSSAQNNDYHYRGKG
                     MSVGVQLNLPLYTGGELSGKIHEAEAQYGAAEAQLTATERHIKLAVRQAYTESGAARY
                     QIMAQERVLESSRLKLKSTETGQQYGIRNRLEVIRARQEVAQAEQKLAQARYKFMLAY
                     LRLVKESGLGLETVFAE"
     gene            complement(2279..3706)
                     /locus_tag="ACFM5C_001765"
     CDS             complement(2279..3706)
                     /locus_tag="ACFM5C_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HFC6069424.1"
                     /translation="MFFSALKSFLSRYITVWRNVWAVRDQLKPPKRTAEEQAFLPAHL
                     ELTDTPVSAAPKWAARFIMAFALLALLWSWFGKIDIVAAASGKTVSGGRSKTIQPLET
                     AVVKAVHVRDGQHVKQGETLAELEAVGTDSDVVQSEQALQAAQLSKLRYEAVLAALES
                     RTVPHIDMAQARSLGLSDADVQSVQVLAQHQYQAWAAQDAQLQSALRGHQAELQSAKA
                     QEQKLVSVGAIEQQKTADYRRLRADNFISEHAFLEQQSKSVSNWNDLESTRGQMRQIQ
                     AAIAQAEQNRVLNTQNLKRDTLDALRQANEQIDQYRGQTDKAKQRQQLMTIQSPADGT
                     VQELATYTVGGVVQAAQKMMVIAPDDDKMDVEVLVLNKDIGFVEQGQDAVVKIESFPY
                     TRYGYLTGKVKSVSHDAVSHEQLGLVYTAVVSLDKHTLNIDGKAVNLTAGMNVTAEIK
                     TGKRRVLDYLLSPLQTKLDESFRER"
     gene            3942..4295
                     /locus_tag="ACFM5C_001766"
     CDS             3942..4295
                     /locus_tag="ACFM5C_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069425.1"
                     /translation="MFTTNDLRHFLEGLAILFSIGYWGTMLLLLWFLVRFAYKKPKRN
                     PGKILSGSLTAAAILMLFVWIIPKQFGPIKEEIQAQEEWDRKYKEAEAVFNEQCKTAG
                     ERFTRRRTMWKGLCC"
     gene            4419..4829
                     /locus_tag="ACFM5C_001767"
     CDS             4419..4829
                     /locus_tag="ACFM5C_001767"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069426.1"
                     /translation="MGNTAMWMSCNPTIPILFGIQVKIFPLNQILNHIHPARYAVTFE
                     NNVDSKLRRHWVAGATIRIIDRQTDEVIAKKTIYVFEKGLDGTGGARMPWKFAILCNK
                     ERLTSSEPLSDFVLSVLKPYILRPLYIASLRRDD"
BASE COUNT         1174 a         1262 c         1175 g         1230 t
ORIGIN      
        1 ttgggcaaca ccaggatgcc tatctgcatg aaatcgccaa acattttgat tgtacggcag
       61 ccaccgtttg ctatgcactc aaacagatgg ggataacgcg caaaaaaaga ccaccactta
      121 caaagaacaa gacccggcca aagtaacgca ttatttgaca cagccggccg aattttctga
      181 ctaccaacgc gtttatttgg atgaaacagg atttgaccgc cacctgttcc gtccctatgc
      241 ccgcagcctg aaagggcaaa tagtgaaagc gcagataagt ggaaaaagat accgacgctt
      301 atctctggtg tccgcacaag tcggcaaccg gctgattgct ccgatggttt atcaaaatac
      361 gatgaccgga gtcttttttg aagcgtggtt tcagcaatgc ctactgcccg cattgactca
      421 aaaatcggtg attattttag ataatgcgcg atttcaccgt atgggtgtct tacgggaaat
      481 ggcggaaaaa ttgggacata aggtattgcc tcttgcacct tattcacctg agctcaaccc
      541 gattgagaaa gtgtgggcga atattaagcg gtatctgcga accgttttgt ctgattacgc
      601 ccgatttgac gatgcactac tgtcctattt tgattttaat tgaatataca tttgaattaa
      661 ttcgcactta atttaaatgt gtttttaact gtgctttatt taaaggcaat gagaatgtga
      721 aagtatcgga tcaatcccaa agcagcctgc actttcgaaa cggggtgcag gctgctttgg
      781 gaatttcata accgtttcag cctgctttat tccgcaaata ccgtttccaa ccctaacccg
      841 ctctctttca ccaagcgcaa ataagccagc atgaatttat accgtgcttg agccagtttc
      901 tgttctgctt gggcgacttc ctgccgcgcc cgtattactt ccagccggtt gcggatgccg
      961 tattgttggc cggtttcggt cgatttcagt ttcaaacggc tgctttccaa aacccgttct
     1021 tgcgccatga tttggtaacg cgccgcaccg ctttcggtat aagcctggcg tacggcgagt
     1081 ttgatgtgcc gctcggttgc ggtcagctgt gcttcggcgg ccccgtattg cgcttcggct
     1141 tcatggattt tgcccgacaa ttctccgccg gtataaagcg gcaaattcaa ctgtacgccg
     1201 acgctcatcc ctttgccccg atagtggtag tcattattct gcgcagatga agtgtagagg
     1261 ttattctgat agccgacatg ggcagaaacg gtgggatagc ggctgttctg tgctgcccga
     1321 agcgcctgtc cgctgctttg cagggcaagc tgctgcatcc ggtattcatg attgttggat
     1381 aaggcaatgc gctgccattc atccagactg taacgttcca gcttgggcag atagcgtgcc
     1441 aacaggttgg cggtatctat ggcctcgatt tgtttgctat ccaggtcggt gtagtcgttc
     1501 aactggtttt cataggtttg tttctcagcc aatacggcga tttcttgggc cagggcattg
     1561 tcgtaaccgg ctttggcttc gtgaatatcc agcgcggtgg cagcaccttt attgaataaa
     1621 gcctgcgcct gccttacctg ctgggcataa gcctcttttt ccgccgcatg ggcggcaacg
     1681 gtgtctcggc tgagtaaaac gttgaaataa ctttcggcaa ctttcaacag caattcttcg
     1741 cgtgccgcat cgaaacgctg ttctgcagcc tgcgtatcga acctgctttg gcggtattgt
     1801 gcaaatttgg cagcgtcaaa taaggtttgt cccacctgca cgctccatcc ctgtgtttcg
     1861 cgggtggaag aaatcgatgg cggctggcgc tggtagctgg cattggcgga tacatgggga
     1921 aggaatgcgg ccttggcttg ttgttgccgt gcgcgcactg catcacgctg gtaatgggac
     1981 gcttgaaaat cagccgaatg ttgctgcgcc gcccgccatg cttcaggcag cgtaaaagcc
     2041 gaaacggatg gggaaaggga tagtggcaag gtaaaaagtg aaacgggtag gatatatttg
     2101 gaaaaatagg atttcatagc cgaaaatagt tcatgttgca aatagggcgt cagtgtcagg
     2161 caaacggaaa taccgtaatc ttgcattatc attagattga gcaatgtcat ccgggcaatg
     2221 gtttcaggca gtctgcatgt ccgaaccggc ggataacaaa tgcccagtac ggatccgcct
     2281 atcgctccct aaagctttcg tccaatttgg tttgcagcgg gcttaacaga taatccagca
     2341 cccgccgttt acccgtttta atctccgccg tgacattcat gcccgccgtc agattcactg
     2401 ctttgccgtc aatattcaag gtatgtttgt ccagcgacac caccgccgta taaaccaagc
     2461 ccaactgttc gtggcttacc gcatcatggc tgacactttt caccttgccc gtcagataac
     2521 cgtagcgcgt atagggaaag ctctcaatct tcaccaccgc atcctgtccc tgttccacaa
     2581 aaccgatgtc tttgttcaat accaaaactt ccacgtccat tttgtcgtca tcgggcgcaa
     2641 tcaccatcat tttttgggca gcctgcacca caccgcccac cgtataggta gccaattcct
     2701 gcaccgtgcc gtccgcaggc gactgtattg tcatcagctg ctgccgctgc tttgccttat
     2761 ccgtttggcc gcggtattgg tcaatctgtt cgtttgcctg gcgcagcgca tccagcgtat
     2821 cgcgtttcag gttctgcgta ttcagcaccc gattctgctc cgcctgtgca atggccgcct
     2881 gaatctgcct catctgaccg cgcgtacttt ccaaatcgtt ccaattgctg accgatttgc
     2941 tctgctgctc caaaaacgca tgttccgaaa taaaattgtc ggcccgcaaa cggcggtagt
     3001 ctgctgtttt ctgctgctcg atcgccccca ccgaaaccag cttctgctcc tgcgccttgg
     3061 ccgactgcaa ttccgcctga tggccgcgca aagccgactg caattgcgca tcctgcgccg
     3121 cccatgcctg atactggtgc tgcgccaaca cctgcaccga ttgcacatcg gcatcggaga
     3181 gacctaaaga ccgtgcttgc gccatatcga tatgcggcac ggtacggctt tccaatgccg
     3241 ccaataccgc ttcataacgc agtttggaca attgggcagc ctgcaaagcc tgctccgact
     3301 gcaccacatc gctgtctgtt cccacagcct ccagttccgc cagcgtttct ccctgtttca
     3361 catgctgccc gtcgcgcaca tgtaccgcct taaccaccgc cgtttccagc ggctggatgg
     3421 ttttgctgcg cccgcccgac accgttttgc ccgaagccgc cgccacaata tcgattttgc
     3481 cgaaccagga ccacaacaaa gccaaaagcg caaacgccat aataaaacgc gccgcccatt
     3541 tcggagcggc agagaccggc gtatcggtca gttccaaatg cgcgggcaaa aacgcctgtt
     3601 cttccgccgt gcgtttgggc ggtttcaact ggtcgcgcac cgcccaaaca ttgcgccata
     3661 cagtaatgta tcgagaaaga aaggatttca gggcggagaa aaacataacg ggtataacct
     3721 tggcaatata gaaacaggaa acaatataaa tatgtaaagg aattttaacg gaaagcgcgg
     3781 cagctgttaa gggaaaggcg ggaatattga caaaaaatac ccaagtcgtt acaaatattc
     3841 attattttac tgcgtaacgc aacgctgaag cgcaggctgc ttttgagatg cggcaaggtt
     3901 cggcaaaaag cagcctgcac atttaaccac aggaacaacc catgtttacc acaaacgatt
     3961 tacgccattt cctagaaggt ttggccatcc tattctcaat cggctattgg ggcaccatgc
     4021 tgctgttgct ttggtttctc gtccgctttg cctataaaaa gcccaaacgg aaccccggca
     4081 aaatcctttc aggcagcctg accgccgccg ctatcctgat gctgtttgtt tggattattc
     4141 ccaaacaatt cggcccgatc aaagaagaaa tacaggcaca agaagagtgg gacagaaaat
     4201 acaaagaagc cgaagccgtg tttaacgaac aatgcaaaac ggcgggggaa agatttacca
     4261 gacggcggac aatgtggaag ggattatgct gttgaaggta gtacctgagc gtaccgtttc
     4321 ggcagatgca aaaaccagag acccgatgtg ggacaatgcg gctttacaga ccagcgaagg
     4381 cgtaaatttt attgctcgtt tcctaggatt ttttagcgat ggggaatacc gctatgtgga
     4441 tgtcctgcaa cccaaccatt ccgatattat tcggtattca ggtaaagatt tttccgctaa
     4501 atcaaatact taatcatata caccccgccc gttatgcggt aacgttcgaa aacaatgtcg
     4561 attccaagct gcgcaggcac tgggtggcag gtgcgaccat acggattatc gaccgccaaa
     4621 ctgacgaagt gattgccaag aaaaccatct atgtctttga aaaaggcttg gacggcacgg
     4681 gtggggcgag aatgccgtgg aagtttgcta tcttgtgcaa taaagaaaga cttacttctt
     4741 cagagccgtt atcggatttt gttcttagcg ttttaaaacc ttatatattg cgtcccttat
     4801 atattgcgtc cctaagaagg gacgattaac aaaaattaac g
//
LOCUS       DAXHNP010000146         4749 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.146, whole genome shotgun sequence.
ACCESSION   DAXHNP010000146 DAXHNP010000000
VERSION     DAXHNP010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4749
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.146"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..369
                     /locus_tag="ACFM5C_001768"
     CDS             <1..369
                     /locus_tag="ACFM5C_001768"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069427.1"
                     /translation="GYDLSFGIRNIIIFFVKGIYTEDDSKPAGKKRPLLNCTPKVGHL
                     TDFRGCSFLWQNIQMNSDLPSFNTIWQGTADHLSISDSLVRRWVTKYRLHGESGIKRR
                     KHTTKYSVEYKLEAIRLVTG"
     gene            373..486
                     /locus_tag="ACFM5C_001769"
     CDS             373..486
                     /locus_tag="ACFM5C_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6069428.1"
                     /translation="MSQKAAADQLNLPDCSILLQWLRLYHLNGINGLKPKP"
     gene            806..1063
                     /locus_tag="ACFM5C_001770"
                     /pseudo
     CDS             806..1063
                     /locus_tag="ACFM5C_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611698.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1116..1298)
                     /locus_tag="ACFM5C_001771"
     CDS             complement(1116..1298)
                     /locus_tag="ACFM5C_001771"
                     /inference="COORDINATES: protein motif:HMM:NF024728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HFC6069429.1"
                     /translation="MKYTIFFSTSHHSNQTKATHRHTHVGSTAGQTTIRSGGDTTLKG
                     AQLIGIGIQADPQLQP"
     gene            complement(1449..2399)
                     /locus_tag="ACFM5C_001772"
     CDS             complement(1449..2399)
                     /locus_tag="ACFM5C_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HFC6069430.1"
                     /translation="MYLGIDVSKLTIDCCLIVDGQNYQKKFQNNKGGFEQLINWLQSH
                     KVNDKLHCVCEATGTYYEALAEYLYSRYTITVENPRKIKGYAIAELQRSKTDTQDAKL
                     IAQYCQDRKHKLKAWKPPTKEQKQLQEIARYLDYLKQQRATEKAKQHEAPDYIKSHIQ
                     TTISNLTAQIQIVKKQLLQFYKDNPSYNNLRKRLKTITGIGEQATAVLLSTYKRHEFK
                     NARQFTAYLGLDPRKFQSGTSVNGKSRISKIGSSEIRKSLYMPALVAYRCNAFPEFVG
                     RLKNKGKHIKLILIAIMRKLAVIAFTILQNGQDFQVERYK"
     gene            complement(3025..4110)
                     /locus_tag="ACFM5C_001773"
     CDS             complement(3025..4110)
                     /locus_tag="ACFM5C_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zonular occludens toxin domain-containing
                     protein"
                     /protein_id="HFC6069431.1"
                     /translation="MIYLFTGNMGTGKTSRVVSMILNNEDGLFKMKLEDGTEVDRPLY
                     FCHIDGLDKRQFKAHELTEEQIMSAPLRDVIPEGAVLIVDEAHYTYPVRAAGRPVPPY
                     IQELTELRHHGHTVILMTQHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLD
                     NPAGVSGVEVASWKPPKEAFKYYKSASQHQKFKKKVPWAVWALIAIVGFVGWKSYGIF
                     KVYSKATDSRIEQEAQKESVVQTMTEQPASSEEMPLKNSDNLKPEDFVPTLPEKPESK
                     PIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYK
                     DEQQRTEQVEQSAKADKPQVLVMGGKP"
     gene            complement(4120..4410)
                     /locus_tag="ACFM5C_001774"
     CDS             complement(4120..4410)
                     /locus_tag="ACFM5C_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HFC6069432.1"
                     /translation="MPLLAGLIPLLGILLKMLIVRIILATGLTFVTYAGYLIALEKFK
                     DYTSNAINSMPSDILNLLLISGFGQGLGYLFGAFSFFIGMHAFKKLTFVFPG"
     gene            complement(4411..>4749)
                     /locus_tag="ACFM5C_001775"
     CDS             complement(4411..>4749)
                     /locus_tag="ACFM5C_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6069433.1"
                     /translation="RHRKERKEGEDGGLLCDYFPEILACQEMGKPSDGMFHDISIPQV
                     IDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYQASYEPLCVFAEKIRFAVLLAFIIMSA
                     FVVFGSLKGK"
BASE COUNT         1182 a         1038 c         1037 g         1492 t
ORIGIN      
        1 ggatacgacc ttagttttgg tatccgtaat atcatcattt ttttcgtcaa gggaatatac
       61 acggaggatg attcaaaacc ggcaggcaaa aaaagaccgc ttctgaactg caccccaaaa
      121 gttggacacc ttaccgactt tagggggtgc agttttttat ggcaaaatat tcagatgaat
      181 tccgacttgc cgtcgttcaa tactatttgg cagggaacag cagaccatct ttctatttcc
      241 gattcattgg tacgcagatg ggtgacaaaa tacagattac acggagagag tggcatcaaa
      301 cgtagaaagc atacgacaaa atattcggtc gaatacaaac ttgaggcaat ccgcctggtg
      361 acggggtagg gaatgtccca aaaagctgcc gcagaccaac tgaatttgcc cgactgctcc
      421 atcttgctgc aatggttgcg cctctaccat ttgaatggta ttaacggttt aaagcccaaa
      481 ccctaaaccc aaaggaagaa agcccgtgaa aaaacagcat ccgccggaaa cgaaaaagcc
      541 gactatctga aaaccaagga agaactgctt gcggaattgg cttgccttaa agcggaaatg
      601 gctgccctaa aaaagctcga tgccttaatc tatgggaaag aagtgcggta gaaagaacgc
      661 aactcgtcgc agggttaagg caatgccatc cgttgaactg ctgttggtga ttgtcggact
      721 gccacgcggc accttctatt accaattggt tgtccaatcg gcagaagaca aatatgccga
      781 tttgaaacgg catatccatg atatttatca aaagcagttg aaagacaacg gtctggttca
      841 gagtatgtcc cgcaagggaa actgcttgga caatgcggca atggaaagtt tcttcggaac
      901 gttgaaatcg gaatgtttcc atacgtgcaa atatgattcc gttaccgaat tggaagctgt
      961 actgcacgaa tatatccgtt actacaacaa cgatagaatc aagttgaaat taaaaggact
     1021 gagccctgtt cagtacagaa ttcagtccct gaaagccgct tgattaaact gtccaacttt
     1081 tgggggtcag ttaatatcgg ttccaccaat agtcgtcagg gttgtagttg ggggtctgcc
     1141 tgtatgccta tgccgataag ctgagcacct ttgagggtgg tatccccgcc gcttcggatg
     1201 gtggtttgtc cggccgtact gccgacatgg gtgtggcggt gggttgcttt tgtctgattg
     1261 ctgtggtggc ttgttgaaaa aaagatagtg tatttcacgg tcaaataact ttacatttct
     1321 tgaagttgca agaatgcgca ccccgacttt ttcgggatgt ttgtttcgtt ttgaatggat
     1381 ttgatgtttt aatttatact ttattttcaa taaattgaaa atcaccggcg aaagcccagt
     1441 ttaatttttt atttatatct ttccacttgg aaatcttggc cgttttgcaa aatcgtaaac
     1501 gctattaccg ccagtttccg catgatggca attaatatca attttatatg cttcccttta
     1561 tttttcagac gccctacaaa ttcagggaag gcattacaac gatatgcaac aagtgcaggc
     1621 atataaaggc ttttccttat ttccgaactt cctatttttg atattctgct ttttccgttc
     1681 acgcttgttc ctgattgaaa ttttctaggg tctaggccta gataagccgt gaactgtctt
     1741 gcatttttaa attcatgtct tttataggtt gatagcaata ctgctgtcgc ttgctcgcct
     1801 atgcctgtta ttgttttcag ccttttgcgt agattgttat aacttggatt gtctttgtag
     1861 aactggagta attgcttttt gactatctgt atttgtgctg tcaggtttga aatagttgtt
     1921 tgaatatggg atttgatata gtcgggtgct tcgtgttgtt tagctttttc tgttgcgcgt
     1981 tgctgtttca gatagtctaa atatcgggcg atttcctgta attgcttctg ttcttttgtc
     2041 ggcggtttcc atgcttttaa tttgtgcttt cggtcttggc aatattgggc tatcaacttt
     2101 gcgtcttgtg tatctgtttt tgatcgttgt agttctgcta tcgcatatcc ttttatcttt
     2161 cgtggattct ctacggtaat tgtatatctt gaataaagat attcggctaa tgcttcgtaa
     2221 tatgtgcctg ttgcttcgca cacgcaatgg agcttatcgt ttactttatg actttgtagc
     2281 caatttatta attgttcaaa tcctcctttg ttgttctgaa acttcttttg ataattttga
     2341 ccgtctacaa tcaaacagca atctattgtg agctttgaaa cgtctattcc taagtacatg
     2401 gtttaacctt attaattcgg gctttttgcc ctagatagtg ttcaaactta agatgtacga
     2461 aagcccacgc ttctatcttt cttacaagct gtacgctttg gccgtacttt cgaagtcgtg
     2521 ggctttactt ggtgtttcgt caaacgccaa gccctcaatg ggctgattta ctcattcagg
     2581 gcttgaagct tatcgccttt gccgtatctg attttattgg ggtcgcaggt tttggtaaag
     2641 gtttctgttg cgacccgaat gtctgatttt ttttgggcgt atctcagtct ggaatcactc
     2701 cgttcggggg tttccggtat tgaaaaacag ttcataaaaa aggaaaaggg ggtattcata
     2761 aagattgggt aaaaagcgcg cccaatcttt acaaagcttc ccccttttcc ttttttctgc
     2821 cctattttcc tgcacctaca acccccgaac gaagcgattc cagactgaga cactttaaaa
     2881 aaaacagcca ttctagcaat taaccccctt cactcagctc aagccatcct gaggggtagg
     2941 gattgaactt tctgctttac gactccgccg ccaattcctt caaacggttt tccgcgctct
     3001 tcagttgtcg tacatgagat tttgctacgg ctttccgccc attacgagaa cttgcggctt
     3061 gtccgctttc gcggactgtt ccacctgttc cgtcctttgc tgttcgtcct tataaggatt
     3121 gaaaggcaac ccgtttttca catattcttt acacattatc tttgttattt ctttcaaggg
     3181 tgttccttga tttgaatagc atgtgcaatc tgattttccg ccgtctatac atccggcgat
     3241 ttgctcaaag gtttttactt gtcggactgt gttataaata ggcttgcttt cgggcttttc
     3301 gggtaaagtc ggcacaaagt cttcaggttt caaattgtct gaatttttta aaggcatttc
     3361 ctctgatgat gcaggctgct ccgtcatcgt ctgcacaacg ctttcttttt gcgcttcctg
     3421 ctcaatccgg ctgtctgtgg ctttgctgta aactttaaaa atgccgtaac ttttccagcc
     3481 tacaaaccct acaatcgcaa tcaacgccca aaccgcccaa ggtacttttt tcttgaactt
     3541 ttggtgctgg cttgctgatt tatagtattt aaaggcttct ttcggcggtt tccaacttgc
     3601 gacttctacg ccgcttacgc ctgcgggatt gtccaacgag gttacgcatt tataccaata
     3661 atactgtttc attccgattg ccttgcgttc aaggtgtaca tgctttgaaa caaggttgcg
     3721 gacgaatata tcaagttggc tcgggtgctg cgtcatcaaa ataacggtat gcccgtgatg
     3781 gcggagttct gtcagttcct gaatataagg cggaacggga cggcctgccg cgcgtaccgg
     3841 ataagtgtag tgcgcttcgt caacaatcag cactgcgcct tccggtatga catcacgaag
     3901 cggggcggac atgatttgct cttccgtcag ttcgtgggct ttaaactgcc gtttatccaa
     3961 tccgtcgata tggcagaaat aaagcggtct gtctacctct gtgccgtctt ccaatttcat
     4021 tttgaacaat ccgtcttcgt tgttcaaaat catagagacg acgcgggagg ttttgcctgt
     4081 ccccatgttt cctgtaaaca gataaatcat gcttctacct catcctggaa agacaaacgt
     4141 cagttttttg aatgcgtgca taccaatgaa gaacgagaat gcgccgaaca ggtagcccaa
     4201 cccctgaccg aatcccgaaa ttaaaagaag gttcagtatg tcggaaggca tggaattgat
     4261 cgcatttgac gtgtagtctt tgaacttttc cagcgcgatg agatacccgg cataggttac
     4321 aaatgtcaga cctgttgcaa ggattattct gacaatcagc attttcagaa gtatgcctaa
     4381 aagtggaatc agaccggcaa gtaatggcat ttatttcccc ttcaacgaac cgaaaacgac
     4441 aaaagccgac ataatgataa aggcgagcag tacggcaaaa cggatttttt cggcaaacac
     4501 gcataacggc tcatagcttg cctgatattg cctaccgaaa acatgaaagg ttttcggctg
     4561 cggacatacg ccgttagacg gtaaaaagtt atgtgaagac catgttttat cgtctataac
     4621 ctgcggtatg cttatatcgt gaaacatgcc gtctgaaggt ttgcccatct cctgacaggc
     4681 taggatttcc ggaaaataat cgcacaaaag cccgccgtct tcgccttctt tcctttcttt
     4741 gcgatgcct
//
LOCUS       DAXHNP010000147         4742 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.147, whole genome shotgun sequence.
ACCESSION   DAXHNP010000147 DAXHNP010000000
VERSION     DAXHNP010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.147"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            181..960
                     /gene="pgeF"
                     /locus_tag="ACFM5C_001776"
     CDS             181..960
                     /gene="pgeF"
                     /locus_tag="ACFM5C_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HFC6069434.1"
                     /translation="MKTITETLNLAPKGKNFLTADWPAPANVKTLITTRNGGVSQGAY
                     QSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTIVVNAAEALDGTPDADAS
                     VDDTGKVACAVMTADCLPVLFCDRAGTTVAAAHAGWRGLAGGVLQNTIAAMKVPPVEM
                     MAYLGPAISADAFEVGQDVFDAFCTPMPEAATAFEGIGSGKFLADLYALARLILKREG
                     VGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDGNAV"
     gene            1012..1491
                     /gene="lptE"
                     /locus_tag="ACFM5C_001777"
     CDS             1012..1491
                     /gene="lptE"
                     /locus_tag="ACFM5C_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFC6069435.1"
                     /translation="MNKLFLTAAVLMLGACGFHLKGADGISPPLTYRSWHIEGGQALQ
                     FPLETALYQASGRVDDAAGVQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVL
                     KRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE"
     gene            1493..2491
                     /gene="holA"
                     /locus_tag="ACFM5C_001778"
     CDS             1493..2491
                     /gene="holA"
                     /locus_tag="ACFM5C_001778"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFC6069436.1"
                     /translation="MAAHIGRIDTDAPLKPLYVIHGEEELLRIEALDALRAAAKKQGY
                     LNREVYTADNAFDWNELLQTAGSAGLFADLKLLELHIPNGKPGKTGGEALQDFAARLP
                     EDTVTLVLLPKLEKTQLQSKWFAALAAKGEVWEAKPVGAAALPQWIRGRLDKIGLGIG
                     ADALALFAERVEGNLLAARQEINKLGLLYPKGHTVNIDEAQTAVANVARFDAFQLAGA
                     WMKGDVPRVCRLLDGLREEGEEPVLLLWAVAEDVRTLIRLAAALKQGQSIQSVRNSLR
                     LWGEKQTLAPLAVKRISVVRLLDALKTCAQIDRIIKGAEDGDAWTVFKRLVVSLAE"
     gene            2612..3031
                     /locus_tag="ACFM5C_001779"
     CDS             2612..3031
                     /locus_tag="ACFM5C_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069437.1"
                     /translation="MDNKTKLRLGGLILLTTAVLSLIIVLIVDSWPLAILLAAVIVAA
                     AAGGFVWTSRRQQRQFIERLKKFDIDPEKGRINEANLRRMYHSGGQHQKDAITLICLS
                     QKCSVDEAHAMFKKRPTRQEINQMAAKQSRGQKRPHR"
     gene            3106..3621
                     /locus_tag="ACFM5C_001780"
     CDS             3106..3621
                     /locus_tag="ACFM5C_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6069438.1"
                     /translation="MMILKTAPLKRRFAAMLYEMLLVGAATCLAALFAGIAAIFLNPV
                     SIAVSALVTSILIMGSWWLYFRANWHGQGQTLAMRTWKIGLCDLNGIQPSLHLLRLRF
                     IWACIFIVFIPMLAYAGLRHFLGIPPKGAAGAALIWLILPWGFALLNPDRQFLYDFLA
                     GTRLVAVKGKP"
     gene            complement(3705..4589)
                     /locus_tag="ACFM5C_001781"
     CDS             complement(3705..4589)
                     /locus_tag="ACFM5C_001781"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HFC6069439.1"
                     /translation="MSSGNIHIHSMTGFANAAAECGSKRINLDLRAVNHRFLDIQIRM
                     PDDLRYLESGIREKISSHIARGKVECKIQIQDTENSRQSLELNSDLVNQLAEINKDLR
                     KHHDLAKLGVADILRFPGVLASQRENTEELAKSITELTEKALKDFTAARRREGKKLGE
                     HLLQRLESMEEIIDALSELFPTLLETHKEKIRARLAEAVGSIDNDRLQQEFALFIQKS
                     DIDEEFSRLRTHIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIATECTQAS
                     VELKVLIEQMREQVQNIE"
BASE COUNT         1060 a         1256 c         1328 g         1098 t
ORIGIN      
        1 gctcggagaa agtatataag ggcatcattc ctgcaccggc aagaatccaa acccgaacgt
       61 ttgaaaacaa tcccgaatct ccgaattccc gcctgtgcgg gaatgacgaa aaaacaaaca
      121 tccatttgcc ccgaaggcag ttaatcaacc ctttccgcca cacacctatt ccaatatcca
      181 atgaaaacca tcacagaaac cctaaatctc gccccgaaag gcaaaaactt cctgaccgcc
      241 gattggcccg cgcccgccaa tgtgaaaacc ctgattacca cgcgcaacgg cggcgtgagc
      301 caaggtgcgt atcagagttt gaacctcggt acgcacgtcg gcgacaatcc cgaagccgtg
      361 cgccgcaacc gcgaaatcgt gcaacagcag gtcggattgc ccgttgccta cctcaatcaa
      421 atccacagca ccattgtcgt caatgctgcc gaagcattgg acggcacgcc cgatgcggac
      481 gcttccgtgg acgacacggg caaggttgcc tgtgccgtga tgaccgcaga ctgcctgcct
      541 gttttgtttt gcgacagggc gggtacgacg gttgccgccg cacacgcggg ctggcgcggt
      601 ttggcgggcg gcgtattgca aaacaccatt gccgcgatga aggttccgcc tgtcgaaatg
      661 atggcgtatc tcggccccgc catcagtgcg gatgcgtttg aagtcggaca ggatgtgttt
      721 gatgcgttct gcacgcccat gcccgaagcc gccaccgcat ttgaaggcat aggcagcggc
      781 aaattccttg ccgaccttta cgcgctcgcc cgcctgattc tgaagcgcga aggcgtgggc
      841 ggcgtatatg gcggcacgca ttgtacggtt ttggaacggg atactttctt ttcctaccgc
      901 cgcgacggag cgacagggcg tatggcgagc ctgatttggc tggacggcaa tgccgtctga
      961 acacgccgct gatataatct accgactttg tgcttttgag aaaggcaagc catgaacaaa
     1021 ctgtttctta ctgccgcagt gctgatgctg ggcgcgtgcg gtttccacct gaaaggtgca
     1081 gacggcattt ctccgccgct gacctaccgg agctggcaca tcgaaggcgg acaggcattg
     1141 cagtttcctt tggaaaccgc gctgtatcag gcttcgggca gggtggacga tgctgccggc
     1201 gtgcagatga ccctgcgtat agacagcgtt tcccaaaaca aggaaaccta caccgttacc
     1261 cgtgcggcag tcatcaacga atatcttttg atattgacgg ttgaagcgca ggtattgaaa
     1321 cgcggcgagc cggtcggcaa accgatgacc gtgtccgtcc gccgcgtcct tgcttatgcc
     1381 gacaacgaga tcttgggcaa acaggaagag gaagcggcat tgtgggcgga aatgcggcag
     1441 gatgccgccg aacagattgt ccgccgcctg acctttctga aggcggaatg acgtggcggc
     1501 acatatcgga cgcattgata cggacgcgcc tttgaaaccc ctgtacgtca tccacggcga
     1561 ggaagaactg ttgcgtatcg aggcattgga cgcattgagg gcggcggcga agaaacaagg
     1621 ttaccttaat cgggaagttt atacggcaga caatgccttc gattggaacg agctgctgca
     1681 aaccgcaggc agtgcgggtc tgtttgccga tttgaagctg ttggaactgc atatccctaa
     1741 cggcaagccc ggcaaaaccg gcggcgaggc gttgcaggat tttgccgccc gcctgccgga
     1801 agatacggta acgctggttt tactgcccaa actggagaaa acccagctcc agtccaaatg
     1861 gtttgccgca ttggcggcaa agggggaagt gtgggaagcc aaaccggtcg gcgcggcggc
     1921 tttgccccaa tggatacgcg gacggctgga caaaatcggt ttgggtatcg gggcagacgc
     1981 attggcactg tttgctgagc gcgtggaagg caatctgttg gcggcacgtc aggaaatcaa
     2041 caagctcggg ctgctgtatc cgaaagggca taccgtcaat atcgatgagg cgcaaaccgc
     2101 cgttgccaac gtcgcccgct tcgacgcgtt ccaactggca ggcgcgtgga tgaagggcga
     2161 tgtcccgcgc gtatgcaggc tcttggacgg attgcgggaa gaaggcgaag aaccggtact
     2221 gcttctgtgg gcggttgccg aagacgtgcg gacgctgatc cggcttgccg ccgccctgaa
     2281 gcaggggcag agcatccaat ccgtccgcaa cagtctcaga ctttggggtg aaaagcagac
     2341 gctcgcgccg cttgcggtca agcggatttc cgtcgtccgc ctgcttgacg cgctcaaaac
     2401 ctgcgcccaa atcgaccgaa tcatcaaagg tgcggaagac ggcgacgcat ggacggtatt
     2461 caaacggctt gtcgtgtcgc tggcggaata aagcggtaat ccctaaaatc cgaaaatact
     2521 gtaaaatacc gttaatcctg aaaagtattc accaatccgt ccgaaaacat ttcagacggc
     2581 acgaccacct caataaagga acatcaaccc tatggacaat aagaccaaac tgcgcttggg
     2641 cggcctgatt ttactgacca ccgccgtttt aagcctcatt atcgtattga ttgtcgattc
     2701 ctggccgctt gccatcctgc ttgccgccgt catcgtcgcc gccgctgcgg gcggctttgt
     2761 ttggacatcc cgccgacagc aacgccagtt tatcgaacgc ctgaaaaaat tcgacatcga
     2821 tcccgaaaaa ggcagaatca acgaggcaaa cctgcgccgt atgtaccaca gcggcggaca
     2881 acaccagaaa gatgcgatta ccctgatctg cctgtcgcaa aaatgttcgg tggacgaggc
     2941 gcacgctatg ttcaaaaaac gcccgacacg tcaggaaatc aatcaaatgg cggcaaaaca
     3001 gtcgcgcggt cagaaacgtc cgcaccgtta accacatgag acatatctgc atgaatgccg
     3061 tctgaagcct gttggcgttt cagacggcat attccgattg aaaagatgat gatactgaaa
     3121 accgccccgc tcaaacgccg ctttgccgcc atgctgtacg aaatgctgct ggtcggtgcg
     3181 gcaacctgtt tggcagcatt gtttgccggt attgccgcca tttttctgaa tcccgtttct
     3241 attgcggttt ctgcattggt aacgagtatc ctgataatgg gatcatggtg gctttatttc
     3301 cgtgccaact ggcacgggca gggacagacc ttggcgatga ggacgtggaa aatcggtttg
     3361 tgcgacctta acggcataca gccgtctcta cacttactcc gcctgcgctt tatttgggcg
     3421 tgcatattca tcgtcttcat tcctatgctt gcttatgccg gattgcgcca cttcctcggc
     3481 attccgccca agggcgcggc cggcgcggca ttgatttggc tgattttacc gtgggggttc
     3541 gccctgctga atcccgatcg gcagtttctg tatgattttc ttgcaggaac aagattggtg
     3601 gcggtcaaag gaaagcctta agcctttata ccgcaaaggt ttcaaactga aaaaatgccg
     3661 tctgaaaggg ctttcagacg gcatttgctt atcggggaaa ccgattattc gatattctgc
     3721 acctgttcgc gcatctgttc gatcaggact ttcagctcga ccgaggcttg ggtgcattcg
     3781 gtagcgatgg atttgctgcc caaagtgttg gcttcgcggt ttaattcctg catcaggaag
     3841 tccagccgtt tgccgctgct gcctttgtgt tcggtaacga tacggcgcac ttcggcaatg
     3901 tgggtgcgta ggcggctgaa ctcttcgtcg atgtcggatt tttggataaa gagggcaaat
     3961 tcctgttgca ggcggtcgtt gtcgatgctg ccgaccgctt cggcaaggcg ggcgcggatt
     4021 ttttctttat gtgtttccaa cagggtagga aagagttcgc ttaatgcatc tatgatttct
     4081 tccatgcttt cgaggcgttg taacaggtgc tcgcccaatt ttttcccttc gcgccggcgt
     4141 gcggcagtaa agtcttttaa cgctttttcg gtcagttcgg taatgctttt tgccaattcc
     4201 tccgtatttt ccctttggct tgccaatacg ccggggaaac gcaggatgtc ggcaacgccc
     4261 agttttgcca aatcgtgatg cttgcggagg tctttgttga tttcggcaag ctggttcacc
     4321 aaatccgagt tgagttccaa ggactgtctg ctgttttccg tatcttgaat ttggattttg
     4381 cattcgactt tgccgcgcgc gatatgggat gaaattttct cgcggatacc gctttccaaa
     4441 tagcgcaaat cgtcgggcat cctgatttga atatctagaa aacggtggtt gaccgcacgc
     4501 aggtcgaggt tgatgcgttt gctgccgcac tctgccgccg cgttggcaaa gccggtcatg
     4561 ctgtggatgt ggatatttcc gctgctcatg tcgttctccg aagcccgtta aaatggaatc
     4621 aatatatcac atctgtatgg cggcaagcgt tttcgggtgt gaaaaattga aggttttgca
     4681 gcggcagatt ggaatcacgc tcttttgttg ctgcaaggaa gggaaatgta tagtggatta
     4741 ac
//
LOCUS       DAXHNP010000148         4708 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.148, whole genome shotgun sequence.
ACCESSION   DAXHNP010000148 DAXHNP010000000
VERSION     DAXHNP010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.148"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..857)
                     /locus_tag="ACFM5C_001782"
     CDS             complement(<1..857)
                     /locus_tag="ACFM5C_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6069440.1"
                     /translation="MYSNNAITNNRNNITLGAYRDAIISIFSDENVVRAIGTINSMYE
                     EYLTLSHKIDQRAFLREGERLSAKAREFQRTAEEAQKSLKEGIGRAASKFRGNSKEAF
                     VARKVQSDLQKALNASNYNKQQYARRAATALENASKSKVMAANLGKFTYGATVAMGTL
                     SMGSAWWKALDEEGNWSDVGLSSASFLGGLMGFQWGAALGVGAFGLLTGGAGWLVVGT
                     IIGGGSGAWWGSLGAEKAWRWFEDFLNLNRSDKFHVTDPLALDLDGDSIETVATKGLA
                     GALFDHRSQG"
     gene            2035..4263
                     /locus_tag="ACFM5C_001783"
     CDS             2035..4263
                     /locus_tag="ACFM5C_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0030256 - type I protein secretion system
                     complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HFC6069441.1"
                     /translation="MCSAVLFIYFFLLNIFLFQPAVIHIQSNYILFMSIVSAPLPALS
                     ALIILAHYHGIAANPADIQHEFCTSAQSDLNETQWLLAAKSLGLKAKVVRQPVKRLAM
                     ATLPALVWCDDGNHFILAKTDGGGEHAQYLIQDLTTNKSAVLSFAEFSNRYSGKLILV
                     ASRASVLGSLAKFDFTWFIPAVIKYRRLFFEVLVVSVVLQLFALITPLFFQVVMDKVL
                     VHRGFSTLDVVSVALLVVSLFEIVLGGLRTYLFAHTTSRIDVELGARLFRHLLSLPLS
                     YFEHRRVGDTVARVRELEQIRNFLTGQALTSVLDLAFSFIFLAVMWYYSSTLTWVVLA
                     SLPAYAFWSAFISPILRTRLNDKFARNADNQSFLVESITAVGTVKAMAVEPQMTQRWD
                     NQLAAYVASGFRVTKLAVVGQQGVQLIQKLVTVATLWIGARLVIEGKLTVGQLIAFNM
                     LSGQVAAPVIRLAQLWQDFQQVGISVARLGDILNAPTENASSHLALPDIRGEITFEHV
                     DFRYKADGRLILQDLNLRIRAGEVLGIVGRSGSGKSTLTKLVQRLYVPEQGRVLVDGN
                     DLALAAPAWLRRQVGVVLQENVLLNRSIRDNIALTDTGMPLERIIEAAKLAGAHEFIM
                     ELPEGYGTVVGEQGAGLSGGQRQRIAIARALITNPRILIFDEATSALDYESERAIMQN
                     MQAICANRTVLIIAHRLSTVKTAHRIIAMDKGRIVEAGTQQELLAKPNGYYRYLYDLQ
                     NG"
     gene            4487..>4708
                     /locus_tag="ACFM5C_001784"
     CDS             4487..>4708
                     /locus_tag="ACFM5C_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6069442.1"
                     /translation="MSTFFRQTAQAMIAKHINRFPLLKLDQVIDWQPIEQYLNRQKNR
                     YLRDHRGRPAYPLLSMFKAVLLGQWHSLSD"
BASE COUNT         1211 a         1065 c         1062 g         1370 t
ORIGIN      
        1 ccttggctgc ggtggtcgaa caatgcacct gcaaggcctt tggtggcaac ggtttctata
       61 ctgtcgccat ctagatctag ggcaaggggg tcggttacgt ggaatttgtc gctgcggtta
      121 agatttaaga aatcttcaaa ccatctccaa gctttttcag ctcctaatga tccccaccaa
      181 gctcctgagc cacctccaat tatagttcca actactagcc aacctgcgcc accagtaagt
      241 aaaccaaaag ccccaacacc caaagccgca ccccattgga agcccattag cccacccaaa
      301 aaagaagctg atgagagacc aacatcactc caatttcctt cttcatccaa ggctttccac
      361 caagcacttc ccatactcaa agttcccatg gcaacagttg ccccataagt aaacttaccc
      421 aaattcgctg ccataacttt tgattttgaa gcattctcta acgctgttgc cgcacgtctt
      481 gcatattgct gcttgttata gttgctagca ttcaatgctt tttgcaaatc actttgtact
      541 tttcttgcaa caaatgcctc ctttgaatta ccacgaaatt tactagcagc tcttccaatt
      601 ccttctttta agcttttttg tgcctcttct gctgtgcgtt ggaattctct tgccttagca
      661 gacagacgct caccctccct taaaaatgct cgttgatcta tcttgtgcga aagggtcaaa
      721 tattcttcgt acattgagtt aatcgtacca atcgccctaa ccacattttc atcagaaaat
      781 atggaaataa tagcatccct atacgcacct agagtaatat tgtttctatt attagttata
      841 gcattattcg aatacataat agcacctcca aacttagaac tgaatacgtt tatattctct
      901 gtgtaataat atcaaataat taattaatgg ataagtaagt ccgaaaaaat aacaactaaa
      961 ataagcaata tactgattct ctcctttatt aattagatat attgaaaaac aaataaaaaa
     1021 taaacagaaa acattcatgt gaaaaagcca cctcatattc ttatttataa gtttaaaata
     1081 actaggcatt gtatatttaa aaatcggtac atccaacgga aacaaaccac ataaaaattt
     1141 ttctttattc tttattaaag acatagtttt atttttcaaa attagtccag ataatatact
     1201 aacaattact attaaaacaa taagcacagc gtaatttttt ataaaattca ttaaaataat
     1261 aacgaaaata ctaaatagat tacatactgt aaattgaaat ataaaatatt cagtatttaa
     1321 tccattttca accgcgagtt ttttaaaata tccttgctcg aaaaaattaa aaaaatccat
     1381 taatactttc ctctcaagaa aactaatttt agtttagtta agataaaatg caatattacc
     1441 ttttctccat aaaagtatgg agcttatata cataaattat gtgcgaggta gcctgaaaaa
     1501 tatccaatac aagatagtag gagatgtttc ccttatcact attggccaat acccaattgg
     1561 caggcactct atttccaaaa ttttctcaag aatagttaaa tattattaat tagtttaaaa
     1621 acaataacat acgtttgtat ttatccgttt tggtctgcct gaaacagact ctatgtccat
     1681 acacggacat gtagacagtt tccttgttat tttggttgct cgtcattagt gatgatactt
     1741 tactcctctc ttaaaaaatc gtcaagaact gttatcaatc tttaaagtct tttttaaaca
     1801 aatatatata cgttcaggct gtctgaaaca caaaaaaatg atgttacccg accgtgacag
     1861 agtcggggca gccggtacct taaccctgca ccttaaccct gtgccttaac ggtatgcagg
     1921 aggcacgaga ggtgcgaggc atcctcatct aactcgattc ctaagccgtt ttaccttcct
     1981 gaaacgagaa cttttccata ctttctcttt acaattccca tatacatcct tacaatgtgt
     2041 tctgctgttt tatttatata tttctttcta ctgaatatat tccttttcca gccagccgtt
     2101 atccacatcc aatctaacta tattttattt atgtctatcg tatccgcacc gctccccgcc
     2161 ctttccgccc tcatcatcct cgcccattac cacggcattg ccgccaatcc tgccgatata
     2221 cagcatgaat tttgtacttc cgcacagagc gatttaaatg aaacgcaatg gcttttagct
     2281 gccaaatctt tgggattgaa ggcaaaggta gtccgccagc ctgtcaaacg tttggctatg
     2341 gcgactttac ccgcattggt atggtgtgat gacggcaacc attttatttt ggctaaaaca
     2401 gacggtgggg gtgagcatgc ccaatatcta atacaggatt taactacgaa taagtctgcg
     2461 gtattgtctt ttgccgaatt ttctaacaga tattcgggca aactgatatt ggttgcttcc
     2521 cgcgcttcgg tattgggcag tttggcaaag tttgacttta cctggtttat tccggcggta
     2581 atcaaatacc gccggttgtt ttttgaagta ttggtggtgt cggtggtgtt gcagctgttt
     2641 gcgctgatta cgcctctgtt tttccaagtg gtgatggaca aggtgctggt acatcgggga
     2701 ttctctactt tggatgtggt gtcggtggct ttgttggtgg tgtcgctgtt tgagattgtg
     2761 ttgggcggtt tgcggacgta tctgtttgca catacgactt cacgtattga tgtggaattg
     2821 ggcgcgcgtt tgttccggca tctgctttcc ctgcctttat cctatttcga gcacagacga
     2881 gtgggtgata cggtggctcg ggtgcgggaa ttggagcaga ttcgcaattt cctgaccggt
     2941 caggcgctga cttcggtgtt ggatttggcg ttttcgttta tctttctggc ggtgatgtgg
     3001 tattacagct ccactctgac ttgggtggta ttggcttcgt tgcctgccta tgcgttttgg
     3061 tcggcattta tcagtccgat actgcggacg cgtctgaacg ataagttcgc gcgcaatgca
     3121 gacaaccagt cgtttttagt agaaagcatc actgcggtgg gtacggtaaa ggcgatggcg
     3181 gtggagccgc agatgacgca gcgttgggac aatcagttgg cggcttatgt ggcttcggga
     3241 tttcgggtaa cgaagttggc ggtggtcggc cagcaggggg tgcagctgat tcagaagctg
     3301 gtgacggtgg cgacgttgtg gattggcgca cggctggtaa ttgagggcaa gctgacggtg
     3361 gggcagctga ttgcgtttaa tatgctctcg ggacaggtgg cggcgcctgt tatccgtttg
     3421 gcgcagttgt ggcaggattt ccagcaggtg gggatttcgg tggcgcgttt gggggatatt
     3481 ctgaatgcgc cgaccgagaa tgcgtcttcg catttggctt tgcccgatat ccggggggag
     3541 attacgttcg aacatgtcga tttccgctat aaggcggacg gcaggctgat tttgcaggat
     3601 ttgaacctgc ggattcgggc gggggaagtg ctggggattg tgggacgttc ggggtcgggc
     3661 aaatccacac tcaccaaatt ggtgcagcgt ctgtatgtac cggagcaggg acgggtgttg
     3721 gtggacggca acgatttggc tttggccgct cctgcctggc tgcggcggca ggtcggcgtg
     3781 gtcttgcagg agaatgtgct gctcaaccgc agcatacgcg acaatatcgc gctgacggat
     3841 acgggtatgc cgctggaacg cattatcgaa gcagccaaac tggcgggcgc acacgagttt
     3901 attatggagc tgccggaagg ctacggcacc gtggtgggcg aacaaggggc cggcttgtcg
     3961 ggcggacagc ggcagcgtat tgcgattgcc cgcgcgttaa tcaccaatcc gcgcattctg
     4021 atttttgatg aagccaccag cgcgctggat tatgaaagtg aacgagcgat tatgcagaac
     4081 atgcaggcca tttgcgccaa ccggacggtg ctgattatcg cccaccgtct gtccaccgtt
     4141 aaaacggcac accggatcat tgccatggat aaaggcagga ttgtggaagc gggaacacag
     4201 caggaattgc tggcgaagcc gaacggatat taccgctatc tgtatgattt acagaacggg
     4261 tagaaggcgg gggatgggcg tgtaggctgc ttttttcgta acgttctgcg ttttcagacc
     4321 gtcgtttact gggtttactg actgaaatga aaccaaagtg caggctgccg gaaagacttt
     4381 ttctgtcttt ttaggcagcc tgcacttctt tttcactcat ctagagacct ttgcaaaatt
     4441 ccccaaaatc ccctaaattc ccaccaagac atttagggga tttctcatga gcaccttctt
     4501 ccggcaaacc gcccaagcca tgattgccaa acacatcaac cgcttcccgc tattgaagtt
     4561 ggaccaggtg attgattggc agccgatcga gcagtacctg aaccgtcaaa aaaaccgtta
     4621 cctccgagac caccgcggcc gtcccgccta cccgctgttg tccatgttca aagccgttct
     4681 gctcggacaa tggcacagcc tctccgat
//
LOCUS       DAXHNP010000149         4687 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.149, whole genome shotgun sequence.
ACCESSION   DAXHNP010000149 DAXHNP010000000
VERSION     DAXHNP010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.149"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(416..952)
                     /locus_tag="ACFM5C_001785"
     CDS             complement(416..952)
                     /locus_tag="ACFM5C_001785"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HFC6069443.1"
                     /translation="MDLREVKLGGETIYEGGFVSISRDKVRLPNGNEGQRIVIRHPGA
                     ACVLAVTDDEKVVLVRQWRYAANQATLELPAGKLDVAGEDMAACALRELAEETPYVAD
                     SVRLLYSFYTAVGFCNEKMYLFEAEGVRLGSTLANDEDEITETVLMSKEEVRQALAND
                     EIKDGKTLIGLQYWLMKD"
     gene            complement(986..1342)
                     /gene="folB"
                     /locus_tag="ACFM5C_001786"
     CDS             complement(986..1342)
                     /gene="folB"
                     /locus_tag="ACFM5C_001786"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFC6069444.1"
                     /translation="MDKIFLHGIKADTLIGVYGWERERLQTLIVDLDIGVPEKAGSDD
                     DIANTVHYAEVCETLRRHLKEQDFLLLEALAEYIADLVLGYFGAVWVRVKIVKPGILE
                     GVREVGVEIERGKRED"
     gene            1398..2000
                     /gene="plsY"
                     /locus_tag="ACFM5C_001787"
     CDS             1398..2000
                     /gene="plsY"
                     /locus_tag="ACFM5C_001787"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFC6069445.1"
                     /translation="MFNIPAVAVSYLIGSLSFAVIVSKYYGMDDPRTYGSGNPGATNV
                     LRSGKKKAAALTLLGDAAKGLVAVLLARVLQEPLGLSDSAIAAVALAALVGHMWPVFF
                     GFKGGKGVATALGVLLALSPATALVCALVWLVMAFGFKVSSLAALTATIAAPLAALFF
                     MPHTSWIFATLAIAILVLLRHKSNIVKLLEGRESKIGGSR"
     gene            2077..2922
                     /locus_tag="ACFM5C_001788"
     CDS             2077..2922
                     /locus_tag="ACFM5C_001788"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008988 - rRNA
                     (adenine-N6-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HFC6069446.1"
                     /translation="MLSYRHAFHAGNHADMLKHFTLFLVLQYFNRKDKPYWYIDTHGG
                     AGVYNLEGSEAQKVGEYRQGIALLRQAKNLPTELNGFIAHIQKILPSPELYCGSPWLA
                     QSLTRVGDKLRLFELHPTDFVHLQNNMGEAGLGKRGQVLREDGYKGLISLLPPPPRRA
                     TVLIDPPYEEKQDYRHVTETLKAALKRFESGCYLIWYPCLSREESRKLPEELKKLLPD
                     NYLHAELHVHAPKADGFGMHGSGMFVINPPYLLAEQLAANLPALTRLLAQDEGARYLL
                     DSKIR"
     gene            3168..4142
                     /locus_tag="ACFM5C_001789"
     CDS             3168..4142
                     /locus_tag="ACFM5C_001789"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFC6069447.1"
                     /translation="MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGAL
                     AGVLGMAGTGNIQGEDQKKLDVIANNIMIDTLKANPAVAGLASEEEDSFVSAGENGRY
                     LVLFDPLDGSSNIDVNISVGTIFSILEKPEGALATESFLQTGRQQLAAGYILYGPQTQ
                     LVFTFGHGVYMFTLNAENEFVLTKEKPKVPESTKEFAINMSNRRHWLPPVQQYIDELL
                     AGETGTRGKNYNMRWVASMVAEIHRILMRGGVFMYPQDKRDPSKPGKLRLMYEANPMS
                     LILEQAGASASNAYQAMLDIQPENLHQRVAVFMGSSEEVAYLDRLHAK"
     gene            complement(4285..4503)
                     /locus_tag="ACFM5C_001790"
     CDS             complement(4285..4503)
                     /locus_tag="ACFM5C_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFC6069448.1"
                     /translation="MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSG
                     AETIDELKKAKLKLKDELYAILQKAAGK"
     gene            complement(4479..>4687)
                     /locus_tag="ACFM5C_001791"
     CDS             complement(4479..>4687)
                     /locus_tag="ACFM5C_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069449.1"
                     /translation="GKAENLCVKRDIVNVFINRTAVLKENFAVSDKTLDKNIIFVIIN
                     VKIQFDFLTVNQERKAICSQNTVI"
BASE COUNT         1207 a         1401 c          984 g         1095 t
ORIGIN      
        1 ctcaaattca aattgggctt ttaggtctat aacaaagaaa aagccttggt aggataaacc
       61 taccaaggct ttttcttaaa aaaacgctct attaccgtgc ctaaaaatgc aaaaaagtaa
      121 ccgtcataac ccttttgcca aaatcaatat catcatccga tgaatgaatt gacggtatat
      181 aagaaagaat taataagctc ataaaccggt aagaaaaatc agtaacaaag atattcatta
      241 ttaaccattt taaaaattat catgttcgtt tgggtaatta ttataccctt ttccctctta
      301 ttactaaagc acgaatgact ttaaaggacg cgcccagaga caagccgaaa aggcatatct
      361 catccgccaa acaaaatgcc caccgactta ctccggcagg cagttcaaca ccctgtcaat
      421 ccttcatcag ccagtattgc aaaccgatta atgtcttgcc gtctttaatt tcatcgtttg
      481 ctaatgcctg acggacttct tctttcgaca tcaatacggt ttccgtaatc tcgtcttcgt
      541 cattggcaag cgtactgccc aaacgcacgc cttccgcttc gaacagatac attttttcgt
      601 tgcaaaaacc gaccgccgta taaaaactgt aaagcaggcg cacgctgtcg gcaacataag
      661 gcgtttcttc agccagttct ctcagcgcac acgctgccat atcctcgccc gccacatcca
      721 gcttgcccgc aggaagttcc aatgtcgcct gatttgccgc ataccgccac tgccgtacca
      781 aaacgacctt ttcatcatcc gttaccgcca acacgcacgc cgctcccgga tgacggatga
      841 cgatacgctg cccttcattg ccgttgggca acctgacctt atccctgctg atgctgacaa
      901 aaccgccctc gtaaatggtt tcgccgccta attttacttc cctcaaatcc acttcatatc
      961 tcctttccgt ttcctattct gccgttcaat cttcacgctt gccgcgctcg atttccacgc
     1021 caacctcgcg cacgccttcc aaaatacccg gcttgacgat tttcacgcgt acccacaccg
     1081 cgccgaaata tcccaaaacc aaatcggcaa tatattccgc caacgcttcc aaaagcagga
     1141 aatcctgttc tttcagatgt cggcgcagtg tttcgcatac ctcggcataa tgtaccgtat
     1201 tggcaatatc gtcgtccgaa cccgctttct cgggaacgcc gatgtccaaa tcgacaatca
     1261 gggtctgcaa ccgttcgcgt tcccagccgt acacgccgat aagcgtatcc gccttgatgc
     1321 cgtgcaaaaa gattttatcc ataatccgcc ccgttttttg ctaaaataac cgcaccattc
     1381 taagtaaagt accacaaatg ttcaacatac cggctgttgc cgtttcctat ctgatcggct
     1441 cactttcttt cgccgtcatc gtttccaagt attacgggat ggacgacccg cgcacctacg
     1501 gatcgggcaa tcctggggcg accaatgttt tacgcagcgg caaaaaaaag gcggccgcgc
     1561 tgacgctctt gggcgatgcc gccaaaggtt tagttgccgt tttgcttgca cgcgtgcttc
     1621 aagaaccgct cggtttatcc gacagcgcaa tcgctgccgt cgcactcgcc gcgctggtcg
     1681 ggcatatgtg gccggtgttt ttcggattta agggcggcaa aggcgtggca acggcattgg
     1741 gcgtgcttct ggcactctct cccgcaactg ccttggtctg cgcgttggtt tggcttgtta
     1801 tggcattcgg cttcaaggtg tcctcccttg ccgcattaac cgccacaatc gccgcccccc
     1861 ttgccgcact gttttttatg ccgcatactt cttggatttt cgcaaccctc gcaatcgcca
     1921 tattggtgtt gctccgccac aaaagtaata tcgtcaagct gctcgaaggc agagaaagca
     1981 aaatcggcgg cagccgctga tttcccatcc atccctgttt atgccgtctg aaccccgctt
     2041 cagacggcat ccgaatatcc cgccgtttta ccgactatgc tcagttacag acacgcattc
     2101 cacgccggca accacgccga tatgctcaaa cacttcacct tgtttttagt gctgcaatat
     2161 ttcaaccgca aagacaagcc ctactggtac atcgacacgc acggcggcgc gggtgtgtac
     2221 aatctcgaag gcagcgaggc acaaaaagtc ggcgaatacc ggcaaggcat cgccctactt
     2281 cgacaagcaa aaaacctgcc aaccgagtta aacggcttta tcgcgcacat acaaaaaatc
     2341 ctgccctcgc ccgaacttta ctgcggttct ccgtggctgg cgcaatcgct gacccgcgtc
     2401 ggcgacaaat tacgcctgtt tgagctgcac cccaccgact ttgtccatct gcaaaacaat
     2461 atgggcgaag caggattggg caaacgcgga caagtgttgc gcgaagacgg ttacaaaggg
     2521 ctgatttccc tgctgccgcc cccgccgcgc cgcgccaccg tcctcatcga cccgccctat
     2581 gaggaaaaac aggactaccg gcatgtaacg gaaacgctga aagccgcttt aaaacggttt
     2641 gagtccggct gttatctcat ttggtatccc tgcctcagcc gcgaagaaag ccgcaagctg
     2701 cccgaagaat tgaaaaaact cctgcccgac aactaccttc acgccgaact tcacgtccac
     2761 gcgccgaaag ccgacggttt cggtatgcac ggcagcggaa tgttcgtcat caatccgccc
     2821 tatctgttgg cggaacaatt ggcggcaaac ctccccgccc tgacgcggct gctggcgcaa
     2881 gacgaaggcg cgcgctacct tttggacagc aaaatccgct gaccccgatg ccgtctgaaa
     2941 cccttcagac aacatctccc gtcaaataaa caaaaccgga cgatataccg gcagtcggca
     3001 cttttaagaa taaatatccc ctcatccgcc tgccgcgttc cgacttgccc catgccgttt
     3061 ttttacacta caatccccta gactatcctg caaaacgcac caaaggaata cgccacaata
     3121 acctgtcgcc cttcagacgg cacaaacctt tccgaaacga gcaaactatg gacacactga
     3181 cccgattcct ccccgaacac ctgcaacaaa accagctgcc cgaagcactc ggcggcgttt
     3241 tactgtccgt tgtttccgcc tgcaccgaaa tcaacgccaa agtccgcctc ggcgcactgg
     3301 ccggcgtatt gggtatggcg ggcacgggca atattcaggg cgaagaccaa aaaaaactgg
     3361 atgttatcgc caacaacatc atgattgaca cactcaaagc caaccctgcc gttgccggtt
     3421 tggcaagcga ggaagaagac tctttcgtaa gtgccggtga aaacggacgc tatctcgtcc
     3481 tattcgaccc tttagacgga tcgtccaata ttgatgtcaa catttccgtc ggtacaattt
     3541 tctccatcct tgaaaaaccc gaaggcgcat tggcaaccga atcattcctt caaacgggca
     3601 gacagcagct tgccgcaggc tatatcctct acgggcctca aacccagctc gtattcacat
     3661 tcggacacgg cgtatatatg ttcacgctca atgccgaaaa cgaatttgtg ctgaccaaag
     3721 aaaaaccgaa agtacccgaa agtaccaaag aatttgccat caatatgtcc aaccgccgcc
     3781 actggctgcc ccccgtccaa caatacatcg acgagctctt ggcgggcgaa accggcacgc
     3841 gcggcaaaaa ctacaatatg cgctgggtag ccagcatggt tgccgaaatc caccgcatcc
     3901 tgatgcgcgg cggcgtgttc atgtatccgc aagacaaacg cgacccgtcc aaacccggca
     3961 aactgcgcct gatgtacgaa gccaacccta tgagcctgat actcgaacag gcgggcgcat
     4021 cggcaagcaa cgcatatcaa gccatgctcg acatacagcc cgaaaacctg caccaacgcg
     4081 tcgccgtctt catgggcagc agcgaagaag tcgcctatct cgaccgcctg cacgcaaaat
     4141 agacagacag ccgttcacac aagtacacgg cggcggcaat ccgataccgc cgccgttatt
     4201 tcaaacagca caagccttct ggtcaaatga caaaaatgcc gtctgaaaac atttcagacg
     4261 gcatttcaaa aactcaaacc cgaattattt tcccgctgct ttttgcagga tggcgtacaa
     4321 ctcgtctttc agtttcaatt tggctttttt cagctcatcg atggtttccg caccgctggt
     4381 aaccggattg ttgaccagac cggtaatttt atcgtccagc tcgttgtgtt cgtcgaacag
     4441 acgggcgaag cgggaatttt cctgtttcaa tttggaaatc aaatcacggt attctgggaa
     4501 catatcgctt tcctctcttg gtttacggtt aaaaagtcaa actgaatctt tacattaatt
     4561 ataacaaaga taatattttt atccagtgtt ttatcggata cggcaaaatt ttcttttaac
     4621 accgccgtcc ggttgataaa aacgttgaca atatcacgct ttacgcataa attttcagcc
     4681 tttccta
//
LOCUS       DAXHNP010000150         4672 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.150, whole genome shotgun sequence.
ACCESSION   DAXHNP010000150 DAXHNP010000000
VERSION     DAXHNP010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.150"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            119..1294
                     /locus_tag="ACFM5C_001792"
     CDS             119..1294
                     /locus_tag="ACFM5C_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFC6069450.1"
                     /translation="MLNTSLSPWPCFTQEEADAVSKVLLSNKVNYWTGSECREFEKEF
                     AAFAGTRYAVALSNGTLALDAALKAIGIGEGDDVVVTSRTFLASASCIVNAGANPVFA
                     DVDLNSQNISAETVKAVLTPNTKAIIVVHLAGMPAEMDDIMALAKEHDLWVIEDCAQA
                     HGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYD
                     AVYHREHAPGFRWLHESFGTNWRMMEMQAAIGRIQLKRLPEWTACRQAHAAKLAESLG
                     KFKSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVSELNARKVPCYQGSCSEV
                     YLEKSFDDTPWRPKERLKNAVELGDTSLMFLVHPTLTDDEIAFCKEHIEAVLVEATR"
     gene            1342..3252
                     /gene="pglD"
                     /locus_tag="ACFM5C_001793"
     CDS             1342..3252
                     /gene="pglD"
                     /locus_tag="ACFM5C_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent dehydratase PglD"
                     /protein_id="HFC6069451.1"
                     /translation="MTLETLIALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSNEW
                     FDPANWQSFLLTAFLTACLFFRMGLYRAVTRFISFRILSTALAGSLASAVLFFLNTLI
                     FEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMAPVIIYGAGQAGRQLLEA
                     VKQMREYSAAAFVDDDPKLWRTVICGLAVYRPDDIAALIGRYGVEKILLAIPSATQEQ
                     RRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVTPDDRLMSAD
                     IEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAVEKELRETCIQKRLD
                     TEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLEC
                     ALAATASGVETFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGN
                     VLGSSGSVVPLFEKQIAEGGPLTLTHPDITRYFMTIPEAAQLVIQAGAMGTGGDVFVL
                     DMGESVKIIDLARQMITLSGLKPKTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRK
                     TGHPRIMTADEAMLPWHELSVLLDRIRAACDRYDQQAIRTLLINAPTGFAPSDGICDL
                     LWVRETHRKNAV"
     gene            3308..4600
                     /locus_tag="ACFM5C_001794"
     CDS             3308..4600
                     /locus_tag="ACFM5C_001794"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HFC6069452.1"
                     /translation="MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARI
                     PEIDRAFADIFSKLAAEHAVENIGNYSNPQGDAALIDALTAFLNREYGWNLTADNIAL
                     TNGSQNAFFYLFNLFGGKFKLSDGTSAEKAILLPLAPEYIGYADVHIEGQHFVSAKPK
                     IENVEHEGEAGFFKYRVNFDALENLPELKEGKIGAICCSRPTNPTGNVLTDGEMARLD
                     ALAQKHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAA
                     PEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLL
                     KRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEILKAEGTLIIPGEHFFIGIDTQ
                     DYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV"
BASE COUNT         1136 a         1497 c         1145 g          894 t
ORIGIN      
        1 cacccccgta cagaccgatt ttgacaacac ctgcggcgcg cgcccgattc ctcgaaacac
       61 gcccccttca gacggcatag ggtcggaaat gccgtctgaa cccgacggac aaaccatcat
      121 gttgaacact tccctttccc cgtggccctg cttcacccaa gaagaagccg atgccgtttc
      181 caaagtcctc ttgtccaaca aagtcaatta ctggacgggc agcgaatgcc gcgaatttga
      241 aaaagaattt gccgcctttg ccggcacgcg gtacgccgtc gccctttcca acggcacgct
      301 ggcactcgat gccgcgctca aagcaatcgg cataggcgag ggcgatgatg tggttgttac
      361 ctcgcgcacc ttcctcgcct ccgcgtcctg catcgtgaac gcgggcgcaa accccgtgtt
      421 tgccgacgtg gatttgaaca gccaaaacat cagcgcggaa accgtcaagg ctgtgctgac
      481 cccgaatacc aaagcgatta tcgtggttca ccttgccggt atgcctgccg aaatggacga
      541 catcatggct ttggcaaaag aacatgattt gtgggtaatt gaagactgcg cccaagcgca
      601 cggcgcaaaa tacaaaggca aatccgtcgg ctctatcgga cacgtcggcg cgtggtcgtt
      661 ctgccaagac aaaatcatga ccaccggcgg cgaaggcggt atggttacga ccaacgacaa
      721 aaccctgtgg gaaaaaatgt ggtcgtacaa agaccacggc aaaagctacg atgccgtgta
      781 ccaccgcgaa cacgcgcccg gtttccgctg gctgcacgaa agtttcggca caaactggcg
      841 tatgatggaa atgcaggcgg caatcgggcg catccagctc aaacgcctgc ccgaatggac
      901 tgcctgccgt caagcgcacg ccgccaagct ggcggaaagc ctaggcaaat tcaaaagtat
      961 ccgcttggtt gaagtcgccg actacatcgg acacgcgcaa tataagttct acgctttcgt
     1021 caaacccgaa cacctcaaag acggctggac gcgcgaccgc atcgtcagcg aactgaacgc
     1081 gcgcaaagtc ccctgctatc aaggcagctg ctccgaagtc tatttggaaa aatctttcga
     1141 cgacacgcct tggcggccga aagagcgttt gaaaaatgct gtcgaactgg gcgacaccag
     1201 cctgatgttc ttggtgcacc cgacgctgac cgacgacgaa atcgcgttct gcaaagaaca
     1261 catcgaagcc gtattggtag aagccacacg ataacccttc agacggcata tgccgcctga
     1321 aagcacatac cgccccacga tatgactctg gaaaccctga tcgccctgcc gcgcaacatc
     1381 aagaaaatct gtttcctcat acacgatttt ctgatgattt tcattgcatt ctggttcacc
     1441 caaagcctaa aggccgacta ctcgaacgaa tggttcgacc ccgccaactg gcagtctttc
     1501 ctattgaccg cgtttttgac cgcctgcctg ttcttcagaa tggggcttta ccgcgccgtc
     1561 acacgcttca tcagcttccg catcctctcc accgcgctgg caggcagcct cgcctccgcc
     1621 gtattgtttt tcctcaatac gctgatattt gaagaacggc tgcggctcgc cctgccgatt
     1681 gtctatttct tactgctgtt tgtttccgtg accggctcgc gtatggtttt gcgcggactg
     1741 ttgtccgaac accccaaaaa acagatggcc cccgtcatta tttacggcgc agggcaggcg
     1801 ggcagacagc ttctcgaggc cgtcaaacaa atgcgcgaat attccgccgc cgcctttgtg
     1861 gacgacgacc ccaaactgtg gcgcaccgtc atctgcggcc ttgccgttta ccgccccgac
     1921 gacatcgccg ccctcatcgg acgctacggc gtggaaaaaa tcctgctcgc cattcccagc
     1981 gcgactcagg aacaacgccg ccgaatcatc aacaaactgg aagcctatcc gtgcgaagtg
     2041 ttgaccattc ccggaatgaa agacctgatg gacgggaaaa tcagcatcgg cacgctcaaa
     2101 aaaatctctg tgtccgacct gctcgggcgc gattccgtca cacccgacga ccgcctgatg
     2161 agtgccgaca tcgaaggtaa aaccgtcatg gtaaccggcg cgggcggctc catcggttcg
     2221 gaactctgcc gccagattat ccgccgccgc cccgaaaagc tgctgctgtt cgagttatcc
     2281 gaattcgccc tgtacgccgt cgaaaaagaa ttgcgcgaaa cctgcatcca aaaacgcctc
     2341 gacaccgaaa tcctgccctt tctcggttcg gtgcaaaacc gcacgctgct cgaacacgtc
     2401 atgaccgcct tttccgttgc gaccgtctat cacgccgccg cctacaaaca cgtccccatg
     2461 gtcgagttca acaccgtcga aggcatacgc aacaacatct tcggcacact cgaatgcgcg
     2521 cttgccgcca cggcttcggg cgtggaaacc ttcgtcctca tctccaccga caaagccgtc
     2581 cgccccacca acacgatggg cgccagcaaa cgtatggcgg aactctgcct acaggcgctc
     2641 gccgccgaac ccggacaaaa aacccgcttc agcatggtgc gtttcggcaa tgttttaggc
     2701 tcgtccggct ccgtcgtccc gctgtttgaa aaacagattg cagaaggcgg cccgcttacc
     2761 ctgacccacc ccgacatcac acgttatttc atgaccatac ccgaagccgc ccaactcgtc
     2821 atacaggcag gcgcgatggg tactggcggc gacgtattcg tcctcgatat gggcgaatcc
     2881 gtcaaaatca tcgaccttgc ccgccaaatg attaccttaa gcggcctcaa acccaaaaca
     2941 cccgaacaac ccgacggcga catcgaaatc ctcattaccg gactgcgtcc cggcgaaaaa
     3001 ctctacgaag agctgctcat cggcgacaac gtccgcaaaa ccggccatcc gcgcattatg
     3061 acggctgacg aggcgatgct gccgtggcac gagctctctg tcctgctcga ccgcatccgt
     3121 gcggcctgcg accgttacga ccagcaggca atccgcaccc tgctcatcaa cgccccgacc
     3181 ggctttgccc cgagcgacgg tatctgcgac ctgctttggg tacgagaaac acacagaaaa
     3241 aatgccgtct gaaccttcag acggcataac gtacaaacca acctacctta cacacacgga
     3301 gtttgacatg cagttttcgg cattcggcga aaaattcacg caacacagcg gcatcctcca
     3361 actgatggac gacctcggcg acgcgctcaa aagcgacaag cccgtcaaca tgctcggcgg
     3421 cggcaacccg gcgcgcattc cggaaatcga tcgggcgttt gccgacatat tctccaaact
     3481 ggcggcagaa cacgccgtcg aaaacatcgg caactactcc aatcctcaag gagatgccgc
     3541 gctgattgac gcgctaaccg ccttcctcaa ccgcgaatac ggctggaacc tgaccgccga
     3601 caatatcgcg ctgaccaatg gttcgcaaaa cgcgtttttc tatttattca acctcttcgg
     3661 cggcaaattc aagctttcag acggcacatc cgcagaaaaa gccattttgt tgccgctcgc
     3721 gcccgaatac atcggctatg ccgacgtgca tatcgaaggg cagcacttcg tttccgccaa
     3781 acccaaaatc gaaaacgtcg aacacgaagg cgaagcaggc ttcttcaaat accgcgtgaa
     3841 ctttgacgca ctggaaaacc tgcccgagct gaaagaaggc aaaatcggcg cgatttgctg
     3901 ttcgcgcccg accaacccga ccggcaacgt gctgaccgac ggcgaaatgg cgcgtttgga
     3961 cgctttggcg caaaaacacg gcattccgct gattatcgac aacgcctacg gaatgccgtt
     4021 ccccaacatc atttacagcg acgtaacgct gaattggcat gaaaacatca tcctctgctt
     4081 cagcctttcc aaagtcggtc tgccgggcgt gcgcaccggc atcatcgtcg ccgcgcccga
     4141 agtcgtcaaa gccgtcagca gcctgaacgc gattgtgaac cttgccccca cgcgcttcgg
     4201 cgcggccatc gccgccccgc tgctggaaag cggcgagatg aaacggcttg ccgaccaagt
     4261 catccggccg ttttaccgca atcaggcgca aaccgccgtc tcgctgctca agcgcgagct
     4321 gggcgcgtac ccgatgaaaa tccacaaacc cgaaggcgcg attttcctgt ggctctggtt
     4381 tgaaaacctg cccgtttctt cgcaaaccct gtacgaaata ctcaaagccg aaggcacgct
     4441 gattattccg ggcgagcatt tcttcatcgg catcgacacg caggattacc cgcacgcggg
     4501 cgagtgcatc cgcatgagca tcgcgcagga cgctcaaacg ctggaaaaag gcattgccgc
     4561 catcggcaaa accgtccgaa aactgtacga caacgtttaa aacgcaaaaa aatgccgtct
     4621 gaaaagtttt cagacggcat gagacctttg caataacata ggttactaaa at
//
LOCUS       DAXHNP010000151         4653 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.151, whole genome shotgun sequence.
ACCESSION   DAXHNP010000151 DAXHNP010000000
VERSION     DAXHNP010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4653
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.151"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            110..1051
                     /gene="miaA"
                     /locus_tag="ACFM5C_001795"
     CDS             110..1051
                     /gene="miaA"
                     /locus_tag="ACFM5C_001795"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFC6069453.1"
                     /translation="MPTPKAFALLGPTACGKTALALKIAETLPVEIISLDSALVYRDM
                     DIGTAKPSHAERSFVPHHLIDIITPVQTYSAARFVEDCTCLIGEITARGKYPLIVGGT
                     MMYFRALTQGLNDLPEADACLRADLDEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQ
                     RIGRALEVYYLTGKPMSTHLGSPTSHTLPFDLHTAALIPENRARLHENIALRFHLMLE
                     QGFIGEVENLRRLYPSLTADSPAIRCVGYRQAWEYLDGKTDFPAFVEKGIAATRQLAK
                     RQLTWLRKTPLDCVTDPFSDGNSCTRLIEAAKRFFGA"
     gene            1055..1774
                     /gene="tadA"
                     /locus_tag="ACFM5C_001796"
     CDS             1055..1774
                     /gene="tadA"
                     /locus_tag="ACFM5C_001796"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HFC6069454.1"
                     /translation="MLTTPPLAPKTVAALHRLGIRTLEELRQNGAVQTFLLLKASGLT
                     LTKSTLWQLQSLLDGTPPQEMAQHDKTRLLAELKNHPPVAAFPPQGEMAHFMGLALEQ
                     AKLSALMGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQAGSEMQNYRLD
                     GCDIYITLEPCAMCASALIQARIRRVIYGAAEPKTGAAGSIVNLFADKRLNTHTAIRG
                     GILQEECRAVLSRFFQNKRKG"
     gene            1779..2267
                     /locus_tag="ACFM5C_001797"
     CDS             1779..2267
                     /locus_tag="ACFM5C_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HFC6069455.1"
                     /translation="MTALLVILALALIAAGTAGIVYPALPGLALMFAGTWLLAYSGGY
                     QIYGAGVLWTVGLISLAGILADYVAGIWGTKYTGAGKLAVRGALVGSIIGMFFSLPGL
                     ILGPFIGAAAGELIDRRNMLQAGKAGLGTLLGLVVGTAFKIGCAVSILFILLVKYIAY
                     LF"
     gene            2333..3085
                     /gene="rlmB"
                     /locus_tag="ACFM5C_001798"
     CDS             2333..3085
                     /gene="rlmB"
                     /locus_tag="ACFM5C_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFC6069456.1"
                     /translation="MANQRPIYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEK
                     AANENIRVYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILD
                     GITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLAR
                     TLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP
                     MFGTVESMNVSVSAGMVLSETRRQRVLKNEKA"
     gene            complement(3147..4538)
                     /locus_tag="ACFM5C_001799"
     CDS             complement(3147..4538)
                     /locus_tag="ACFM5C_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HFC6069457.1"
                     /translation="MSGQLGKGADAPDLVYGLEDRPPFGNALLSAVTHLLAIFVPMIT
                     PALIVGGALELPVEMTAYLVSMAMVASGVGTYLQVNRFGPVGSGMLSIQSVNFSFVTV
                     MIALGAGMKEGGLTKDAMISTLLGVSFVGAFLVCFSAWLLPYLKKVITPTVSGVVVML
                     IGLSLVHVGITDFGGGFGAKADGTFGSMENLGLASLVLLIVLIFNCMKNPLLRMSGIA
                     VGLIAGYIVALFLGKVDFSALQNLPLVTLPVPFKYGFAFDWHAFIVAGAIFLLSVFEA
                     VGDLTATAMVSDQPIEGEEYTKRLRGGVLADGLVSVIATALGSLPLTTFAQNNGVIQM
                     TGVASRHVGKYIAVILVLLGLFPVVGRAFTTIPSPVLGGAMVLMFGLIAIAGVRILVS
                     HGIRRREAVIAATSVGLGLGVAFEPEVFKNLPVLFQNSISAGGITAVLLNLVLPEDKT
                     EAAVKFDTDHLEH"
BASE COUNT         1162 a         1489 c         1127 g          875 t
ORIGIN      
        1 aaggcatacg gtaaacacgc ccccttgccg tcggcgtgct tccgcaaacc aaaatataac
       61 gtcggcacgc tttccgctat aatccgtatt tttccaaacc tgaaacgtta tgccgacccc
      121 gaaagccttt gccctgctcg ggccgaccgc ctgcggcaaa accgcgctcg ccctcaaaat
      181 tgccgaaacc ttgcctgtcg aaatcatcag cctcgattcc gcgctggttt accgcgatat
      241 ggacatcggc acggcgaaac cgtctcatgc cgagcgttcc tttgtaccgc accaccttat
      301 cgacatcatt acgcctgttc agacatacag tgccgcccgt tttgtcgaag actgcacgtg
      361 tctgattggc gaaatcacgg cgcgtgggaa atatccgctg attgtcggcg gcacgatgat
      421 gtatttccgc gccctgaccc aaggtttgaa cgatttgccc gaagccgacg cctgcctgcg
      481 tgccgacttg gacgaacaaa aacaaatgta cggcttggat ttcctctacc gcaccctgca
      541 aaaagtcgac cctgaaacag catgccgtct gaaaccgaac gacagccagc gtatcggacg
      601 cgctttggaa gtttattatt taaccggcaa accgatgagt acgcatctcg gcagcccaac
      661 ctcccatacg ctccccttcg atttgcatac cgccgccctg attcccgaaa accgcgcccg
      721 cctgcatgaa aacatcgccc tgcgtttcca cctgatgctt gaacagggct ttatcggcga
      781 agtagaaaac ctgcgccgcc tctatcccag cctgaccgcc gactcccctg ccatacgctg
      841 cgtcggctac cgtcaggcat gggaatatct ggacggaaaa accgatttcc cggcatttgt
      901 cgagaaaggc attgccgcca cgcgccaact tgccaaacgc caactgactt ggttgcgcaa
      961 aacaccttta gactgcgtta ccgacccgtt ttcagacggc aattcatgca cacgcctgat
     1021 tgaggcggca aaacggtttt tcggcgcata aactatgctg accacgccgc cgctcgcccc
     1081 caaaaccgtc gccgccctac acaggctcgg tatccgtacg ctcgaagaac tgcggcaaaa
     1141 cggcgcggtt caaaccttct tgttattgaa ggcatcaggt ttgaccctca cgaaaagcac
     1201 gctgtggcag cttcagtcgc tgctggacgg cacgccgccg caagaaatgg cgcaacacga
     1261 taaaacccgc ctgcttgccg agttgaaaaa ccatccgccc gtcgccgcct ttcccccgca
     1321 aggcgaaatg gcgcatttca tgggtttggc attggaacag gcgaaactgt ccgcattaat
     1381 gggcgaaata cccgtcgggg cagtcatcgt ttcagacggc aaaatcatcg catcggcaca
     1441 caacacctgc attgccgact gcaatgtcag ccggcacgcc gaaatcaacg ccttggcaca
     1501 ggcaggcagc gaaatgcaaa actaccgcct tgacggatgc gacatctaca tcaccctcga
     1561 accctgcgcc atgtgcgcgt ccgcactgat acaggcacga atcaggcgcg tgatctacgg
     1621 tgcggcagaa cccaaaaccg gcgcggcagg aagcatcgtc aacctgtttg ccgacaaacg
     1681 cctcaatacg cacaccgcca tacggggcgg aatcctgcaa gaagaatgcc gcgccgtatt
     1741 aagccgtttt ttccaaaaca aaagaaaagg ttgaacctat gaccgccttg ctcgtcatcc
     1801 tcgccctcgc cctgatagcc gccggtacgg cgggcatcgt ttaccccgcc ctgcccggat
     1861 tggcattgat gtttgccgga acctggctgc tcgcctactc cggcggctac caaatctacg
     1921 gcgcgggcgt tttgtggacg gtcggactca tcagccttgc cggcatactg gcggactatg
     1981 tggcaggcat atgggggaca aaatataccg gagcgggcaa gctcgccgtt cgcggcgcat
     2041 tggtcggcag tatcatcggt atgtttttct cccttcccgg actaatactc ggtcccttta
     2101 tcggcgcggc ggcaggcgaa ctgatcgatc ggcgcaatat gcttcaggca ggtaaagcgg
     2161 gcttgggtac gctgttgggg cttgtcgtcg gcacggcgtt caaaatcggc tgcgccgtat
     2221 ccatcttgtt tatcctgttg gtgaaataca tcgcctacct gttttaaccc cttcagacgg
     2281 cataccggca aattgctaca atgccgtctg aacccttttc acaaagcacc atatggcaaa
     2341 ccaaagacct atctacggct tccatgccgt caacgcccga ttgtggcaaa accccaaatc
     2401 catcgtcgaa ctctatgtcc aagaaggcaa aaacgatgta cgcacgcgcg aagtgttgga
     2461 aaaggcggca aacgaaaaca tccgcgtata ttttgccgat gccgaccgcc tcaacgccat
     2521 cagcaaaggt gcgcgccatc agggcgtggt cggatttatc gatgcctcca aaaaccacgt
     2581 ccacctcgaa gacgtattgg aaaacttaag cgaaccgccg ctgctgctga tactcgacgg
     2641 catcaccgat ccgcacaacc tcggcgcgtg cctgcgtacc gccgacgcaa tgggcgtaca
     2701 tgccgtcatc gcaccgaaag acaaaagcgc ggggctgaac gccaccgtca gcaaggtcgc
     2761 cagcggcgcg gcggaaaccg tcccctacat caccgtaacc aacctcgccc gcaccctgcg
     2821 cgagctgaaa gaatacggca tttggatcat cggcaccgat atgggcggca acgccgacct
     2881 ttaccattgc gatctgcccg acagcgcggc atgggtgatg ggcaacgaag gcgacggtat
     2941 gcgccgcctg acacgcgaac attgcgacat gctggtgtcc atacccatgt tcggcacggt
     3001 cgaaagcatg aacgtctccg tgtctgccgg aatggtatta agcgaaaccc gccggcagcg
     3061 cgtattaaaa aacgaaaaag cgtaagcctc aaaaacaatg ccgtctgaaa cagggattct
     3121 gtttcagacg gcattcgttt tcaaaatcag tgttccaagt ggtcggtatc aaacttgacc
     3181 gccgcctcgg ttttatcttc gggcaagacc aaattcagca agactgccgt aatgccgccg
     3241 gcggaaatag agttttggaa caagacaggc aggtttttaa acacttccgg ctcaaacgcg
     3301 acacccaagc ccaaaccgac cgacgttgcc gcaattaccg cttcgcgcct gcggatgccg
     3361 tggctgacca aaatccgcac gcccgcaatc gcaatcaagc cgaacatcaa aaccatcgcg
     3421 ccgcccaaca ccggactcgg aatcgtcgta aacgcgcgtc cgacaacggg gaacagaccc
     3481 aacagcacca aaatcacggc aatatatttg cccacatggc gcgaagccac gccggtcatc
     3541 tgaatcacgc cgttgttttg cgcaaacgtc gtcagcggca gcgaacccaa agccgtcgca
     3601 atcaccgaca ccaagccgtc agccaacacg ccgccgcgca ggcgtttggt gtattcctcg
     3661 ccttcaatcg gctgatcgga caccattgcc gtcgccgtca aatcgccgac cgcctcaaac
     3721 acgctcaaca ggaaaatcgc gcccgccaca ataaatgcgt gccagtcgaa agcaaaaccg
     3781 tatttaaacg gtacgggcag cgtaaccagc ggcaggtttt gcagcgcgga aaaatccacc
     3841 ttgcccaaaa acagcgcgac aatgtaaccg gcaatcagac cgaccgcgat gccgctcatc
     3901 cgcaacagcg ggtttttcat gcagttgaat atcaacacaa tcagcaacac cagcgaagcc
     3961 agccccaagt tttccatcga gccgaacgtg ccgtccgcct tcgcgccgaa gccgccgccg
     4021 aaatcggtaa taccgacgtg taccaaactc aagccaatga gcatcacgac cacgccgctg
     4081 accgtcggcg taatcacttt tttcaaatac ggcaaaagcc acgccgagaa acacaccaaa
     4141 aacgcgccga caaacgatac acccaagagc gtcgaaatca tcgcatcctt agtcaaaccg
     4201 ccctccttca tccctgcgcc cagcgcaatc atcacggtaa cgaacgaaaa attcaccgac
     4261 tggatggaca gcatccccga accgaccggc ccgaagcggt tgacctgcaa ataagtgccg
     4321 acacccgacg caaccatcgc catcgacacg agatacgccg tcatctccac cggcaattcc
     4381 agcgcgccgc ccacaatcag cgcgggcgta atcatcggca caaaaatcgc caaaagatgg
     4441 gtaaccgcgc tcaagagcgc attaccgaac ggcggcctgt cttccaaacc gtacaccaaa
     4501 tcaggcgcat ccgcaccttt gcccaactga ccgctcattg tatttcctta ttttaaaggt
     4561 tgaaaaatcc aagcgcggat tgtagcgaat ctgccgcacg gcttcaattt gcatttcaga
     4621 cggcatccgt ctggtccaca cgtttaccac att
//
LOCUS       DAXHNP010000152         4622 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.152, whole genome shotgun sequence.
ACCESSION   DAXHNP010000152 DAXHNP010000000
VERSION     DAXHNP010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.152"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..2177)
                     /locus_tag="ACFM5C_001800"
     rRNA            complement(<1..2177)
                     /locus_tag="ACFM5C_001800"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(2586..2661)
                     /locus_tag="ACFM5C_001801"
     tRNA            complement(2586..2661)
                     /locus_tag="ACFM5C_001801"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2626..2628),aa:Ala,seq:tgc)
     gene            complement(2667..2743)
                     /locus_tag="ACFM5C_001802"
     tRNA            complement(2667..2743)
                     /locus_tag="ACFM5C_001802"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2707..2709),aa:Ile,seq:gat)
     gene            complement(2845..4385)
                     /locus_tag="ACFM5C_001803"
     rRNA            complement(2845..4385)
                     /locus_tag="ACFM5C_001803"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          980 a         1341 c          975 g         1326 t
ORIGIN      
        1 aaagacacca gggtggtatt tcaaggacgg ctccacagag actggcgtct ctgcttcaaa
       61 gcctcccacc tatcctacac aagtgacttc aaagtccaat gcaaagctac agtaaaggtt
      121 cacggggtct ttccgtctag cagcgggtag attgcatctt cacaaccact tcaacttcgc
      181 tgagtctcag gaggagacag tgtggccatc gttacgccat tcgtgcgggt cggaacttac
      241 ccgacaagga atttcgctac cttaggaccg ttatagttac ggccgccgtt tactggggct
      301 tcgatccgat gctctcacat cttcaattaa ccttccagca ccgggcaggc gtcacaccct
      361 atacgtccac tttcgtgtta gcagagtgct gtgtttttaa taaacagtcg cagccaccta
      421 ttctctgcga ccctccgggg cttacggagc aagtccttaa ccttagaggg cataccttct
      481 cccgaagtta cggtatcaat ttgccgagtt ccttctcctg agttctctca agcgccttag
      541 aattctcatc ctgcccacct gtgtcggttt gcggtacggt tcgattcaaa ctgaagctta
      601 gtggcttttc ctggaagcgt ggtatcggtt acttcgtgtc cgtagacact cgtcgtcact
      661 tctcggtgtt aagaagaccc ggatttgcct aagtcttcca cctaccggct taaacaagct
      721 attccaacag cttgccaacc taaccttctc cgtccccaca tcgcatttga atcaagtaca
      781 ggaatattaa cctgtttccc atcgactacg catttctgcc tcgccttagg ggccgactca
      841 ccctacgccg atgaacgttg cgcaggaaac cttgggcttt cggcgagcgg gcttttcacc
      901 cgctttatcg ctactcatgt caacattcgc acttctgata cctccagcac actttacaat
      961 gcaccttcat cggcctacag aacgctcccc taccatgccg gtaaaccggc atccgcagct
     1021 tcggttatag atttgagccc cgttacatct tccgcgcagg acgactcgac cagtgagcta
     1081 ttacgctttc tttaaatgat ggctgcttct aagccaacat cctggctgtc tgggccttcc
     1141 cacttcgttt accacttaat ctatcattgg ggaccttagc tggcggtctg ggttgtttcc
     1201 ctcttgacaa cggacgttag cacccgctgt ctgtctcccg aggaaccact tgatggtatt
     1261 ctgagtttgc catgggttgg taagttgcaa taacccccta gccataacag tgctttaccc
     1321 ccatcagtgt cttgctcgag gcactaccta aatagttttc ggggagaacc agctatctcc
     1381 gagtttgttt agcctttcac ccctatccac agctcatccc cgcattttgc aacatgcgtg
     1441 ggttcggtcc tccagtacct gttacggcac cttcaacctg gccatggata gatcactcgg
     1501 tttcgggtct acacccagca actcatcgcc ctattaagac tcggtttccc tacgcctccc
     1561 ctattcggtt aagctcgcta ctgaatgtaa gtcgttgacc cattatacaa aaggtacgca
     1621 gtcacacctc tagggtgctc ccactgtttg tatgcatcag gtttcaggtt ctgtttcact
     1681 cccctcccgg ggttcttttc gcctttccct cacggtactg gttcactatc ggtcgatgat
     1741 gagtatttag ccttggagga tggtcccccc atattcagac aggatttcac gtgtcccgcc
     1801 ctacttttcg tacgcttagt accgctgttg agatttcgaa tacgggactg tcacccacta
     1861 tggtcaagct tcccagcttg ttcttctatc tcgacagtta ttgcgtacag gctcctccgc
     1921 gttcgctcgc cactacttgc ggaatctcgg ttgatttctt ttcctccggg tacttagatg
     1981 gttcagttct ccgggttcgc ttctctaagt ctatgtattc aacttaggat actgcacaga
     2041 atgcagtggg tttccccatt cggacatcgc gggatcattg ctttattgcc agctcccccg
     2101 cgcttttcgc aggcttacac gtccttcgtc gcctatcatc gccaaggcat ccacctgatg
     2161 cacttattca cttgactcta tcatttcaag aacttctttg acttcgtttg cctacctgtt
     2221 gactaagtaa aagcaaactt gaaattccta ctttgataaa gcttactgct ttgttgtgtc
     2281 ttaatcctgc cttttgtgtt tcaggattaa gtcgatacaa tcatcaccca aatactgtgt
     2341 ttgttttctt ttctcttgtg agcgattttt tatcctttgc aaagaataaa aaatcaaaac
     2401 aaacgctttg tctttgtttg ttgatttcgg ctttccaatt tgttaaagat cgatgcgttc
     2461 gatattgcta tctactgtgc aaatcaaaac gagctgatta ttatatcagc attttgttct
     2521 tggtcaagtg tgatgtcgcc ctgaatggat tctgttccat tcttccgttt tgatttgtac
     2581 agtattggtg gaggcaaacg ggatcgaacc gatgaccccc tgcttgcaaa gcaggtgctc
     2641 taccaactga gctatgcccc cgttattggt gggtctggga ggacttgaac ctccgacccc
     2701 acgcttatca agcgtgtgct ctaaccagct gagctacaaa cccggattct cttcttaagc
     2761 gaatcttgcc ttcactcaag cttcttccgc atctttttca gtttaccgat aagtgtgaat
     2821 gcctaaagcc tcttctttct ctagaaagga ggtgatccag ccgcaggttc ccctacggct
     2881 accttgttac gacttcaccc cagtcatgaa gcataccgtg gtaagcggac tccttgcggt
     2941 tatcctacct acttctggta tcccccactc ccatggtgtg acgggcggtg tgtacaagac
     3001 ccgggaacgt attcaccgca gtatgctgac ctgcgattac tagcgattcc gacttcatgc
     3061 actcgagttg cagagtgcaa tccggactac gatcggtttt gtgagattgg ctccacctcg
     3121 cggcttggct accctctgta ccgaccattg tatgacgtgt gaagccctgg tcataagggc
     3181 catgaggact tgacgtcatc cccaccttcc tccggcttgt caccggcagt ctcattagag
     3241 tgcccaactg aatgatggca actaatgaca agggttgcgc tcgttgcggg acttaaccca
     3301 acatctcacg acacgagctg acgacagcca tgcagcacct gtgttacggc tcccgaaggc
     3361 actcctccgt ctctggagga ttccgtacat gtcaagacca ggtaaggttc ttcgcgttgc
     3421 atcgaattaa tccacatcat ccaccgcttg tgcgggtccc cgtcaattcc tttgagtttt
     3481 aatcttgcga ccgtactccc caggcggtca atttcacgcg ttagctacgc taccaagcaa
     3541 tcaagttgcc caacagctaa ttgacatcgt ttagggcgtg gactaccagg gtatctaatc
     3601 ctgtttgcta cccacgcttt cgggcatgaa cgtcagtgtt atcccaggag gctgccttcg
     3661 ccatcggtat tcctccacat ctctacgcat ttcactgcta cacgtggaat tctacctccc
     3721 tctgacacac tcgagtcacc cagttcagaa cgcagttccc gggttgagcc cggggatttc
     3781 acatcctgct taagtaaccg tctgcgcccg ctttacgccc agtaattccg attaacgctc
     3841 gcaccctacg tattaccgcg gctgctggca cgtagttagc cggtgcttat tcttcaggta
     3901 ccgtcatcag ccgctgatat tagcaacagc cttttcttcc ctgacaaaag tcctttacaa
     3961 cccgaaggcc ttcttcagac acgcggcatg gctggatcag gcttgcgccc attgtccaaa
     4021 attccccact gctgcctccc gtaggagtct gggccgtgtc tcagtcccag tgtggcggat
     4081 catcctctca gacccgctac tgatcgtcgc cttggtaggc ctttacccca ccaaccagct
     4141 aatcagatat cggccgctcg aatagcgcaa ggcccgaaag tcccctgctt tctctctcaa
     4201 gacgtatgcg gtattagctg atctttcgat cagttatccc ccactactcg gtacgttccg
     4261 atatgttact cacccgttcg ccactcgcca cccaagaagc aagcttctct gtgctgccgt
     4321 ccgacttgca tgtgtaaagc atgccgccag cgttcaatct gagccaggat caaactctta
     4381 tgttcaatct ctaacttttt aacttctggt ctgcttcaaa gaaaccaaca ggacaatgtt
     4441 caaaacatta tcttgtctgt ctttcaaaca gtgtgaggct caaggcactc acacttatcg
     4501 gtaatctgtt ttgttaaaga gcgttgcgaa ttataaagta ttccttccgc ctgtcaagat
     4561 atctctcgat atccccaaca ttctgtgcta tacttttcag ttcgtccgcc gcttctgcag
     4621 ca
//
LOCUS       DAXHNP010000153         4598 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.153, whole genome shotgun sequence.
ACCESSION   DAXHNP010000153 DAXHNP010000000
VERSION     DAXHNP010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4598
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.153"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(201..1139)
                     /locus_tag="ACFM5C_001804"
     CDS             complement(201..1139)
                     /locus_tag="ACFM5C_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6069458.1"
                     /translation="MLELNGLCKRFGGKTVADNICLTVGRGKILAVLGRSGCGKSTLL
                     NMIAGIVRPDGGEIQLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQK
                     MPKAEAESLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFS
                     SLDTHLRDRLRRMTAERIRKGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPET
                     LVQTPAGVQVAHLMGLPNTDDDRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHP
                     EHGILWLNLDMRHAGEISGNDTVHIRIEDREIVRFR"
     gene            complement(1148..2023)
                     /locus_tag="ACFM5C_001805"
     CDS             complement(1148..2023)
                     /locus_tag="ACFM5C_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6069459.1"
                     /translation="MPTVRFTESVSKQDLDALFEWAKASYGAKSCWKTLYLNRLPLGN
                     LSPEWAERVKKDWEAGCSESSDGIFLNADGWTDMGGRLQHLARTWNKAGLLHGWRNEC
                     FDLTDGGGNPLFTLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGKRSPHKAVDPDK
                     LDNIAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPFIRPVSRLHSLRPVSRGVHNEIL
                     YVFDAVLPETFLPENQDGEVACFEKMDIGSLVATMLSGNMMHDAQLVTLDAFCRYGLI
                     DAAHPLSEWLDGIRL"
     gene            complement(2212..2288)
                     /locus_tag="ACFM5C_001806"
     tRNA            complement(2212..2288)
                     /locus_tag="ACFM5C_001806"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2252..2254),aa:Met,seq:cat)
     regulatory      2438..2537
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2630..4531
                     /gene="thiC"
                     /locus_tag="ACFM5C_001807"
     CDS             2630..4531
                     /gene="thiC"
                     /locus_tag="ACFM5C_001807"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFC6069460.1"
                     /translation="MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRD
                     DIRVPLREIRQDDTYTAQGTEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLDE
                     RGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKAGRNVTQLHYARQGIITPE
                     MEFVAIRERLKLDELSQKPEYAKLLKQHAGQSFGANIPTHPDQITPEFVRQEIAAGRA
                     IIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDL
                     STGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVD
                     YFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAY
                     DVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVK
                     ENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHL
                     GLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPE
                     RAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEF
                     VKKGAKIYS"
BASE COUNT         1095 a         1320 c         1224 g          959 t
ORIGIN      
        1 atgacgatga aaagattgtt gtcgcttcgg ataaattttt gccgtgttgg gttctagatt
       61 cccgcttttg cgggaatgac ggcagagcgg tttcagttgt ttccgataaa tttttgcagc
      121 cctgataaaa aatatggctg ctttggtaaa aaaatgccgt ctgaaaggtt tttcagacgg
      181 catttgtttt taaggaagca tcagcggaag cggacgattt cccggtcttc gatacggatg
      241 tgtaccgtat cgtttcccga tatttcaccg gcgtgccgca tatcgaggtt cagccacagg
      301 atgccgtgtt ccggatggag gacggacagg ctgaacgatt cgggcaaaca ggtacgggat
      361 aatacgcggc actccatgcc gtcttggtcg aaacgcaccg catgttgcgg aatatggcgg
      421 tcatcgtcgg tattgggcag ccccatcaga tgggcgacct gcacgccggc aggcgtttga
      481 accaaggttt cgggcgtacc gcattgaagg attttcccct cgtgcatgac ggcgatttcg
      541 tctgccgccg tgcaggcctc ttcgggcgaa tgcgttacca aaacggcagg gatgccgccc
      601 ttgcggatac gttcggcagt catgcggcgc agccggtcgc gcaaatgcgt gtccaaactg
      661 gaaaacgatt cgtccaacag cagcagggaa gggcggacaa ccaaagcgcg cgccagtgcc
      721 aaccgttgct tttcgcctcc ggaaagtttt tcaggcttgc ggtgcgcctc gttttccagt
      781 ccgacttcgg caagtgccgc catggcgagg ctttcggctt cggctttcgg cattttttgc
      841 attttcaaac cgaatgccgc attttccagt gcactcatat ggggaaacag cgcgtaatct
      901 tgaaacatca gcgaaatacg gcgtttttcg ggcggcatac gggtaatgtt ttccccgttc
      961 agctgaattt cgccgccgtc cggccggacg atgcccgcaa tcatattcag cagggtggat
     1021 tttccgcagc ccgaccgccc cagtacggcg agtattttgc cgcgcccgac agtcaggcag
     1081 atgttgtcgg caaccgtttt gccgccgaag cgtttgcaga gtccgttcag ttcaagcatg
     1141 gcgcatccta taaacgtatg ccgtccagcc actcggacag cggatgggcg gcatcaatca
     1201 gaccgtaacg gcaaaacgcg tccagcgtaa ccagttgcgc gtcgtgcatc atgtttcccg
     1261 acaacatggt ggcaaccaag ctgccgatgt ccattttttc aaaacacgca acctcgccgt
     1321 cctgattttc aggcaggaag gtttcgggta ggacggcatc gaatacatac aggatttcat
     1381 tgtgcacacc ccggctgacg gggcgcaggc tgtgcagccg ggataccgga cggataaacg
     1441 gaaacagcgt tttatccaaa ccggcttctt cgctgctttc gcggcacacg gcttcagacg
     1501 gcatttcgcc gccggaaaca ccgccggcgg caatattgtc gagtttgtcg ggatcgactg
     1561 ctttgtgcgg actgcgcttg cctatccaga aatgccatcg gccgtccgat tcggtcagtc
     1621 cgttgagatg gacggcgcgg ctgagcagtc cgaacgggcg gaaagcggcg cgttcgagcg
     1681 tgaacaaggg gttgccgccg ccgtcggtca ggtcgaaaca ctcgttgcgc cagccgtgaa
     1741 gcagccccgc cttgttccat gtgcgggcga ggtgctgcaa gcgtccgccc atatccgtcc
     1801 agccgtccgc attcagaaaa atgccgtctg aagactccga gcagcctgcc tcccagtctt
     1861 ttttgacgcg ctccgcccat tccggcgaca gattgcccaa aggcagacgg ttcagataca
     1921 gcgttttcca gcaacttttt gcaccgtaac ttgcttttgc ccactcgaac agggcatcaa
     1981 ggtcttgttt gctgacggat tcggtaaaac ggacggtcgg catagtcggc tttcttgaac
     2041 ataatgcgga agattgtagc caaaccgcct gaatttgcaa ccgcaaacag acggcgggct
     2101 gccgttccga tattgcggca ggaaggaaaa tccggcaaaa aacggaggcg gcaggaaaca
     2161 ggaaacaggc aaaacaaaac ccctcggcat tgaaccgagg ggtttaatat ttggttgcgg
     2221 gagcaggatt cgaacctacg accttcgggt tatgagcccg acgagctacc atgctgctcc
     2281 atcccgcgtc agaagatgga actatacggc agatttttta tgttgtcaaa cattatttcc
     2341 gcgaaaaatc ataaaatttt gccgtccggc ggtttatgcc tgatttgaaa tatcattttc
     2401 tttacaaaag ttcatgttcg tgatttaatt ttggttaaca ttgaaacagg ggtgctgcat
     2461 gatgttcagg cggctgagaa atacccttta cacccgatct ggataatacc tgcgtgggga
     2521 gttttcacgg attctgcctt tcagacggca ttttttgata ctcgggccgt ttgaaaaagc
     2581 aaagtgctcc tgtttcttta ttctaaacga gaaaacagga gcatttttta tgactacgcc
     2641 aaaaaaaacc gccaaaactt ccggcaacga agcgcgcgaa cttgccgact tgagcgaaga
     2701 catcggcatc cgcttcaaat atccgaactc ggagcgcgtg tatctgcaag gcagccgcga
     2761 cgacatccgc gtgcctttgc gcgaaatccg tcaggacgac acctacacgg cgcaaggcac
     2821 ggaagccaac ccgccgattc ccgtctatga caccagcggc gtgtacggcg atccggcggc
     2881 gcacatcgac ctgaaacaag gtctgccgca catccgcacg gcgtggctgg acgaacgcgg
     2941 tgataccgaa atcctgccca agctttccag cgaatacggc atcgaacgcg cacacgatcc
     3001 gaaaaccgcc catctgcgct tcaaccaaat cacccgcccg cgccgcgcca aagccggccg
     3061 caacgtaacc cagctccatt acgcccggca aggcattatc acgcccgaaa tggagtttgt
     3121 cgccatacgc gaacgtttaa aattagacga attgtcccaa aaaccggaat acgccaaact
     3181 cttgaaacag cacgcagggc aaagtttcgg cgcgaatatc ccgacccatc ccgaccaaat
     3241 cacgcctgaa ttcgtgcgcc aagaaatcgc cgccggacgc gcgattatcc ccgccaacat
     3301 caaccacccc gaactcgaac cgatgattat cggccgcaac ttccgcgtca aaatcaacgg
     3361 caatttgggc aactccgccg tcacctccag cctgaccgaa gaagtcgaaa aaatggtgtg
     3421 gtcgctgcgt tggggcgcgg acacaattat ggacttatcc acaggcgcgc acatccacga
     3481 aacgcgcgaa tggattatcc gcaacgcgcc cgtccccatc ggcactgtgc cgatttacca
     3541 agcgttggaa aaaaccggcg gcatcgccga agatttgact tgggatttgt tccgcgacac
     3601 cttaatcgaa caggcggagc aaggcgtgga ctatttcacc atacacgcgg gcgtgttgct
     3661 gcgttatgta ccgatgaccg ccaaccgcct caccggcatc gtctcgcgcg gcggttcgat
     3721 tatggcgaaa tggtgtttgg cacatcatcg ggaaaatttc ctctacacgc atttcgacga
     3781 aatctgcgaa attatgaaag cgtatgacgt atcgttcagc ctcggcgacg gcctgcgccc
     3841 cggctgcatt gccgatgcca acgacgaatc ccaattcgcc gaactgcaca ccttgggcga
     3901 attgaccgat aaagcgtgga aacatgacgt acaagtcatg atcgaaggcc ccggccatgt
     3961 gccgctgcaa cgcgtcaaag aaaatatgac cgaagagctg caacactgtt ttgaagcgcc
     4021 gttttacacc ctcggcccgc tcgttaccga catcgccccc ggctacgacc acatcacctc
     4081 gggcataggc gctgccaata tcggctggta cggcacggcg atgctctgtt acgttacccc
     4141 caaagaacat ttgggactgc ccgacaaaga agacgtgcgt accggcatca tcacctacaa
     4201 actcgccgcc cacgccgccg acctcgccaa aggctggccg ggcgcacagt tgcgcgacaa
     4261 cgccctgagc aaggcgcgtt tcgagttccg ctggcgcgac cagttccgcc taagcctcga
     4321 ccccgaacgc gccgaaagct tccacgacga aaccctgccc gccgaaggcg cgaaaatcgc
     4381 ccacttctgt tcgatgtgcg gccccaaatt ctgctcgatg aaaatcacgc aggaagtgcg
     4441 cgactacgcc gacaagcaaa aagcccaacg gcagggcatg gaggaaaaag cggtcgagtt
     4501 cgtcaaaaaa ggcgcgaaga tttacagttg aaacgtcaag caaaaaatgc cgtctgaaac
     4561 ccggaaaaaa ggcttcagac ggcattcttt cgcttgtg
//
LOCUS       DAXHNP010000154         4540 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.154, whole genome shotgun sequence.
ACCESSION   DAXHNP010000154 DAXHNP010000000
VERSION     DAXHNP010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4540
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.154"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            168..1400
                     /locus_tag="ACFM5C_001808"
     CDS             168..1400
                     /locus_tag="ACFM5C_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFC6069461.1"
                     /translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLN
                     ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLIVYCLAVAAIVFASSAE
                     QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
                     QGLGGWQAIFVFLAAYSLVLLGLVQHFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
                     MGYLFFQAFSFGSMFAFLTESSFVYQQLYRVTPHQYAWAFALNIITMMFFNRVTAWRL
                     KTGAHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
                     ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHDGSATVMAATMTASTSCGIAL
                     LWLCSHRAWKENEQSEYL"
     gene            1439..2566
                     /gene="pheA"
                     /locus_tag="ACFM5C_001809"
     CDS             1439..2566
                     /gene="pheA"
                     /locus_tag="ACFM5C_001809"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFC6069462.1"
                     /translation="MLECTINYCSGEIMSQTIDELLLPHRNAIDTIDAEILRLLNERA
                     QHAHAIGELKGTGAVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERP
                     LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDNCFKQVETRQADYLVAPVENSTEG
                     SVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGITKVFSHAQALAQCNDWLGR
                     HLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTR
                     FLVMGHHETGASSSDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWE
                     YLFFIDIEGHRQDAQIQTALERLGERASFVKVIGSYPTAVL"
     gene            2600..3391
                     /gene="recO"
                     /locus_tag="ACFM5C_001810"
     CDS             2600..3391
                     /gene="recO"
                     /locus_tag="ACFM5C_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HFC6069463.1"
                     /translation="MSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSAR
                     KRQSELRGVLVSFVPVSASWYGSQELKTLHRAEWVGGWRQPQGRALFSGLYVNELVLK
                     LTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADGTGGDI
                     LADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKIT
                     RLFIRHLLPEGLKSRQVLEQIRQFDRKETARETVPTSDGTASNAV"
     gene            3415..4143
                     /gene="pdxJ"
                     /locus_tag="ACFM5C_001811"
     CDS             3415..4143
                     /gene="pdxJ"
                     /locus_tag="ACFM5C_001811"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFC6069464.1"
                     /translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
                     EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
                     GLDVLAQQEKIAGFTKILTDAGIRVSLFIDADDRQIQAAYDVGAPVVELHTGAYADAR
                     SHAEQLKQFERLQNGAHFAGDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLIAQ
                     ALFLGLPEAVRQMKEAMFRARLLP"
     gene            4189..4296
                     /locus_tag="ACFM5C_001812"
                     /pseudo
     CDS             4189..4296
                     /locus_tag="ACFM5C_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            4295..4516
                     /locus_tag="ACFM5C_001813"
                     /pseudo
     CDS             4295..4516
                     /locus_tag="ACFM5C_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="taurine catabolism dioxygenase TauD"
BASE COUNT          977 a         1260 c         1300 g         1003 t
ORIGIN      
        1 aggcaacgct gtactggttt ttgttaatcc actatatcgt tccggttcgt ccggttttgc
       61 cggggctttt gttgccgcct gtttgtgccg gtgtgttaaa attttccgtt tccgcgtatt
      121 gtgttttccg ccgccgggcg gtttgtttgc gaatcggacg agaatttatg ccttctgccc
      181 attatcctga aatgagcgaa aaactgatgg cggttttgat ggcgatgctg gttacgctga
      241 tgccgttttc catcgatgcc tacctgcccg cgattcccga aatggcgcag tcgctgaacg
      301 cggatgtcca ccgcatcgaa cagagcctga gtttgtttat gttcggcacg gcgttcggac
      361 aggtggtcgg cggttcggtg tccgacatca aagggcgcaa acccgtcgcg ctgaccggtc
      421 tgattgtata ttgccttgcc gttgccgcca tcgtatttgc ttcgagtgcc gaacagctcc
      481 tcaacctgcg cgtcgtgcag gcattcggtg cgggcatgac tgtggtcatc gtcggcgcaa
      541 tggtgcgcga ttattattcc ggacgcaaag ccgcccagat gtttgccctt atcggcatca
      601 ttttgatggt tgtgccgctg gtcgcaccca tggtcggcgc attgttgcag ggcttgggtg
      661 gctggcaggc gatttttgtt tttctggcgg cgtattcgct ggtgctgctc ggtttggtgc
      721 agcatttcct gcccaagcct gccgtcggcg gcaaaatcgg acgggacgtg ttcgggctgg
      781 tggcggggcg gttcaagcgc gtattgaaaa cccgtgccgc catggggtat ctgtttttcc
      841 aagcattcag tttcggctcg atgtttgctt ttttgaccga atcgtccttc gtgtaccagc
      901 aactttaccg cgttacgccg catcaatacg cttgggcgtt tgcgctcaac atcatcacga
      961 tgatgttttt caaccgcgtt actgcgtggc ggctcaaaac cggcgcgcat ccgcaaagca
     1021 tcctgctgtg ggggattgtc gtccagtttg ccgccaacct gtcccaactc gccgccgtgc
     1081 tgtttttcgg gttgcccccg ttttggctgc tggtcgcgtg cgtgatgttt tccgtcggta
     1141 cgcagggctt ggtcggtgca aacacgcagg catgctttat gtcttatttc aaagaagagg
     1201 gcggcagcgc gaacgccgtg ttgggcgtgt tccagtcctt aatcggcgcg ggggtgggta
     1261 tggcggcgac cttcttgcac gacggttcgg caaccgtgat ggcggcaacg atgaccgcgt
     1321 ccacctcttg cggcattgcg cttctgtggc tgtgttcgca ccgggcgtgg aaggaaaacg
     1381 aacagagcga atacctttaa cggaaaatgc cgtctgaaac cgtttcagac ggcatttgat
     1441 gttagaatgc acgataaatt actgttcagg cgaaattatg tcccaaacta tcgacgaact
     1501 cctccttccc caccgcaacg ccatcgacac catcgatgcc gaaatcctgc gcctgctcaa
     1561 cgaacgtgcg caacacgccc acgccatcgg cgagctgaaa ggcacgggcg cagtgtaccg
     1621 ccccgaacgc gaagtcgccg tgttgcgccg cattcaggat ttgaacaaag gcccgctgcc
     1681 cgacgaatcg gtagcacgcc tgtttcggga agtgatgagc gagtgcctcg ccgtcgaacg
     1741 cccgctgacc atcgcctatc tggggccgca gggcacgttt acccaacagg cggcgattaa
     1801 gcatttcgga cacgccgcgc acaccatggc gtgtccgacc atagacaact gcttcaagca
     1861 ggttgaaacc cgtcaggcag actatctggt cgcccctgtg gaaaactcga ccgaaggctc
     1921 ggtcgggcgc acgttggatt tgcttgccgt taccgcgttg caggcgtgcg gcgaagtcgt
     1981 tttgcgcatc caccacaacc ttttgcgtaa aaacaacggc agcaccgaag gcatcaccaa
     2041 agtcttttcc cacgcgcagg cgttggcgca atgcaacgac tggttgggca gacaccttcc
     2101 caacgccgaa cggattgccg tgtccagcaa tgccgaagcc gcaaggctgg ttgccgaatc
     2161 ggacgacggt acggttgccg ccatcgccgg acgcacggcg gcggaaatct acggactcga
     2221 tatggttgcc gagtgcatcg aagacgagcc gaacaacacc acgcgcttct tggtgatggg
     2281 acatcacgaa accggtgcaa gcagcagcga caagacttcg ctggccgttt ccgcgcccaa
     2341 ccgcgccggt gcggttgcct cgctgctgca accgctgacc gagtcgggta tttccatgac
     2401 caagtttgag agccgtccga gcaaatccgt tttgtgggaa tacctgttct tcatcgacat
     2461 cgaaggacac cgccaggacg cgcagattca gacggcattg gaacgcttgg gcgaacgcgc
     2521 ttcgttcgtc aaagtcatcg gttcgtaccc gaccgccgtt ttgtagcggc agcagcgttc
     2581 agacggcatt tcaggcatga tgtccgaaca ccgagtcaac cacgaacccg tcttcctgtt
     2641 ggcttcctcg ccatggcgcg aaagcagcct gcgggtcgaa gcgttcagcc gccgttacgg
     2701 gcgtgtggca cttttggcaa gaagcgcgcg caagcggcag agcgaattgc gcggcgtgct
     2761 ggtttccttc gtgcccgtca gtgcgtcgtg gtacggcagt caggaactca aaaccctgca
     2821 ccgtgccgaa tgggtcggcg gatggcggca gccgcagggc agggcgttgt tcagcggtct
     2881 gtatgtgaac gaactggtgt tgaaactgac cgcgcgcgaa gacccgatgc ccgaactgta
     2941 cgacgcgttg gcaaaagtga tggaggcggt gtgccgtgaa gccaaccata ttgccgattt
     3001 gcgccgcttc gagtggaagc tgctcaatgc cttgggcgtt gcccccgatt tgcacgccga
     3061 cggcacgggc ggcgatattt tggcggacaa aacctaccgg ctgatgcccg aagaggcggt
     3121 catgcccgta tgcgaggacg cagacgcgct ttcgcacgaa gccggcgcaa ttgtcgaagg
     3181 gcaaagcctg atcgatttgc gcgaaggcag tttccgcacc gccgaaagcc tgcaacaggc
     3241 attgaaaatc acacggcttt ttatccgcca cctgttgccc gaggggctga aatcgcggca
     3301 ggtgttggaa cagatacggc agtttgaccg caaagaaacc gcccgggaaa ccgtcccgac
     3361 ttcggacggc acggcttcaa atgccgtctg aaggcagaaa taaaaggaaa gattatgctt
     3421 ttaggtgtca acatcgacca catcgctacc gtccgcaatg cgcgcggcac gacttatccc
     3481 agccccgtgg aggcggcact ggttgccgaa acgcacggtg cggatttgat taccatgcac
     3541 ctgcgcgaag accgccgcca catcaaagac gcggatgtgt ttgccgtcaa aaacgccatc
     3601 cgcacgcgcc tgaaccttga aatggcgttg acggaagaaa tgctcgaaaa cgcgcttaaa
     3661 gtgatgccgg aagacgtgtg catcgtgcct gaaaaacgtc aggaaatcac gaccgaaggc
     3721 ggcttggacg tattggcgca acaggaaaaa atcgccgggt tcaccaaaat cctgaccgac
     3781 gcaggcatcc gagtctctct ctttatcgat gccgacgaca ggcaaatcca agccgcctat
     3841 gatgtcggcg cgcccgttgt cgagctgcac accggcgcgt atgccgacgc gcgcagccac
     3901 gccgaacaac tcaagcaatt cgagcgtctg caaaacggcg cgcattttgc cggcgatttg
     3961 ggcttggtcg tcaacgccgg acacggactg accatacaca acgttacccc catcgcccaa
     4021 atcctcgcca tccgcgaact gaacatcggg cattcgctga ttgcccaagc cctcttcctc
     4081 ggactgcccg aagccgtgcg ccagatgaag gaggcgatgt tcagggcaag gctgctgccg
     4141 taagggcagg caaacccttt cagacagcat ttcacgacag ggatatgtta tagtggatta
     4201 aatttaaatc aggacaaggc ggcgaagccg cagacagtac aaatagtacg gcaaggcaag
     4261 ccaacgccgt actggtttaa atttaattca ctatatgaat caaaagtata ttttatctgc
     4321 aaacaataat agtttgatag aagaaattca caatacagta cagcgtattg gttattgtat
     4381 tgttcgcggt cttaatctaa accatcttga tggcagccgg agaaacaaga aattatttga
     4441 ctttctatct caattaggaa tgctgacaaa ccacaaaggc gatggtttta aatctatatt
     4501 ttgggatatt aaatattgag gcgatgatta tgtaatatag
//
LOCUS       DAXHNP010000155         4533 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.155, whole genome shotgun sequence.
ACCESSION   DAXHNP010000155 DAXHNP010000000
VERSION     DAXHNP010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.155"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..1776
                     /gene="pilC"
                     /locus_tag="ACFM5C_001814"
     CDS             <1..1776
                     /gene="pilC"
                     /locus_tag="ACFM5C_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6069465.1"
                     /translation="DTFGIVSEGSFMPDTSEWKKVLLPWTVRASNDDGQFNTFNKEEN
                     NGKPKYSQKYRSRDSSKHERNLGDIVNSPIVAVGGYLATSANDGMVHIFKKGNGVDER
                     NYSLKLSYIPGTMPRQYFDNDTSALKDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQV
                     EWKGQNRVFMFGAMGLGGRGAYALDLTKAENGDPTAVSLFDVKNDKNKGNNSAELGYT
                     VGTPQIGKTHDGKYAAFLASGYATKTIDSTDNKTALYVYDLESSGTLIKKIDVPGGKG
                     GLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLKDWSVRTIFSGNKPITSAPAISQLK
                     DKRVVIFGTGSDLSEEDVLNTDEQYIYGIFDDDTAASNVDVKLKGLGGGLLEQVLEQK
                     DKTLFLTDYKRSDGSGNKGWVVKLKDGQRVTVKPTVVLRTAFVTIRKYKDNGCGAETA
                     ILGINTADGGKLTKKSARPIVPDTNTAVAQYSGHKKGTNGKSIPIGCMQKGNEIVCPN
                     GYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPDGKRAGKNNRCFSQKGVRTLLM
                     NDLDSLDITGPTCGMKRISWREVFF"
     gene            complement(2307..4457)
                     /gene="yccS"
                     /locus_tag="ACFM5C_001815"
     CDS             complement(2307..4457)
                     /gene="yccS"
                     /locus_tag="ACFM5C_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YccS family putative transporter"
                     /protein_id="HFC6069466.1"
                     /translation="MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
                     AGGLVDLDNRLTGRLKNIIATVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGA
                     VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAIILFQIILPHRP
                     VQESVANAYDALGGYLEAKADFFDPDEAAWIGNRHIDLAMSNTGVITAFNQCRSALFY
                     RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQ
                     GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLYDGNDSPDIRHLRRLLDNLGS
                     VDQQFRQLQHNGLQAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLS
                     LVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
                     YFTPSVETKLWIVIASTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
                     IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKITERLKSGETGDDVE
                     YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
                     EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQ
                     SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
BASE COUNT          996 a          995 c         1505 g         1037 t
ORIGIN      
        1 gacactttcg gcattgttag tgaagggagc ttcatgcctg ataccagcga gtggaaaaaa
       61 gtattgctgc cttggacggt tcgtgcttcc aatgatgacg gtcaatttaa cacattcaac
      121 aaagaagaaa acaacggcaa gccaaaatac agtcaaaaat accgcagccg cgacagcagc
      181 aagcacgagc gcaatttggg cgacatcgtc aacagcccca tcgtggcggt cggcgggtat
      241 ttggctactt ccgccaacga cgggatggtg catatcttca aaaaaggcaa cggcgtggac
      301 gagcgcaact atagtctgaa gctcagttat atccccggca cgatgccgcg ccaatatttt
      361 gataacgaca cttccgctct caaagactcc accctcgcca aagagctgcg cgcctttgcc
      421 gaaaaaggct atgtgggcga ccgctacggc gtggacggcg gctttgtctt acgccaagtc
      481 gaatggaaag ggcaaaaccg cgtgtttatg ttcggcgcga tgggccttgg cggcagaggt
      541 gcgtatgcct tggatttgac caaagccgaa aacggtgacc cgaccgccgt ttccctgttt
      601 gatgtcaaaa atgacaaaaa taaaggcaat aatagtgcag aattaggcta caccgtcggc
      661 acgccgcaaa tcggcaaaac ccacgacggc aaatacgccg ctttcctcgc ctccggttat
      721 gcgactaaaa ccattgacag cacagacaat aaaaccgcgc tgtatgtgta tgatttggaa
      781 agcagcggta cgctgattaa aaaaatcgat gtacccggcg gcaagggcgg gctttcgtcc
      841 cccacgctgg tggataaaga tttggacggc acggtcgata tcgcctatgc cggcgatcgc
      901 ggcggcagta tgtaccgctt tgatttgaaa gactggtctg tacgcaccat tttcagcggc
      961 aacaaaccga ttacttccgc gcccgctatt tcccaactga aagacaaacg cgtggttatc
     1021 ttcggcacgg gcagcgattt gagtgaggag gatgtactca atacggacga acaatatatt
     1081 tacggtatct ttgacgacga tacggcggcg agtaatgtag atgtaaaact caaaggtttg
     1141 ggaggcgggt tgctcgagca ggtgcttgag cagaaggata aaaccttatt cctgaccgat
     1201 tataagcgat ccgacggctc gggcaataag ggctgggtag tgaaattgaa ggacggacag
     1261 cgcgttaccg tcaaaccgac cgtggtattg cgtaccgcct ttgtaaccat ccgcaaatat
     1321 aaagacaacg gctgcggcgc ggaaaccgcc attttgggca tcaataccgc cgacggcggc
     1381 aagctgacca agaaaagcgc gcgcccgatt gtgccggaca ccaatacggc tgtcgcgcaa
     1441 tattccggcc ataagaaagg caccaacggc aaatccatcc ctataggttg tatgcaaaaa
     1501 ggcaatgaaa tcgtctgccc gaacggatat gtttacgaca aaccggttaa tgtgcgttat
     1561 ctggatgaaa agaaaacaga cggattttca acaacggcag acggcgatgc gggcggcagc
     1621 ggtatagacc ccgacggcaa gcgtgccggc aaaaacaacc gctgcttctc ccaaaaaggg
     1681 gtgcgcaccc tgctgatgaa cgatttggac agcttggaca ttaccggccc gacgtgcggt
     1741 atgaaacgaa tcagctggcg tgaagtcttc ttctgatttg cacgcgaaaa tgccgtccga
     1801 aaggttttcg gacggcattt tttgcgtttt tcgggagggg cgggtttgta aaaggcgggc
     1861 tatagggtag gcttcatctc gccaatctca ctgaatccat caatttccac aattcaatta
     1921 aataccgtca aaccgatgcc gtcattcccg tgcaggcggg aatctagacc ttgggataac
     1981 agtaatattc aaaggttagc tgaagcttta gagattctgg attcccactt tcgtgggaat
     2041 gacgggatgc aggttcgtgg gaatgacggg attttaggtt tctgtttttg gttttctgtt
     2101 ttcgtgggaa tgacggaatg taggttcgtg ggaatgacgg gattttaggt ttctgttttt
     2161 ggttttctgt tttcgtggga atgacggaat gtagattcgt gggaatgacg gttcagttgc
     2221 tacgcattta ccctgcgcaa agctttatcc actatcttgc aacctgtctg acaatctgct
     2281 ctctcttaca aaatgccgaa actttttcag gcggcgtttt ggggctgcct gtgcggaatt
     2341 tggcggtagg cgcggtagta gggttcgagc tgtcgggcga tgagttggag ctgttggagg
     2401 aggatgtggc tttgtgttcc gctactgtgg gtgcggaggg tgtcgagttc gccacgcagt
     2461 gtatccaatg ccgtctgaaa gtcgtcgggt tcggtttcgg gcaggtgttg gaagatgtgg
     2521 gcggtgtgtt cggcggcgag gtggaactgt gcggtaaagt cggggctgca ttcttcgtgc
     2581 atttcgctgc ggtatgcgcc gagggcggag atgtagccgg tcagggcgta gccggttttg
     2641 agcagggtaa agccgggttg caggctgtcg gcgaattttg cgggttcgct gctcatgtcg
     2701 gaaagggtgc tgctgagggc ggcggtgtgt tcgtgggcgc ggcggcgggt ggcgcggtat
     2761 tcgacgtcgt cgccggtttc gccgcttttg aggcgttcgg tgattttttc gagataggca
     2821 ccgttgctgc atacggcaag ggcggcggtg cgttcgagcg tgaggtattt ccagtctggc
     2881 cacaggtagc tgactgccgc ccaggcaagg gatgcgccga taatggtgtc gatgatgcgt
     2941 acgggcatgg cggcgtatac gtccaaacct gcgagggaga ggctggtcag ggcttgaatg
     3001 gtaatgaaga aggtggagaa actgtatttg taggtgcggg tcatgaaaaa gagggtggta
     3061 ctggcgatga caatccagag tttggtttcg acagacgggg tgaagtaggg gacgagcgag
     3121 ccgacgatta cgccgagtac ggtgccggcg atgcgctggc ggacgcggct tttggtggcg
     3181 gtgtagttgg gttggcagac gaaaagggcg gtcagtagta tccagtagcc gaggttgagg
     3241 ttgagggctt cgacgatggt gcaggcggcg gcaacgacaa gggacaggcg gacggcatgg
     3301 cggaatacgc ctgattcgag gtttagctgc ggacggattg cctgccaggt gtttttgagg
     3361 ctgccggttt cgagggcggc gatgcgggtg tcgcccatgc ggtcgttttc tgcctgcagg
     3421 ccgttgtgct ggagttggcg gaattgttgg tcgacgctgc cgaggttgtc gagaagacgg
     3481 cgcaggtggc ggatgtcggg gctgtcgttg ccgtcgtaaa ggagacgcag cgattggcgg
     3541 cagccttcga tggcgcggcc gaggcgtttg ctgtaaacgt agtctttgct tgcgcgcagg
     3601 gcttgggcgg tattgcggca ggcttgtccc tgcatttcga gcaggcggtg gatgcggaag
     3661 atgatgtcgg tgtttttgaa tttttcggac atctcttggt agtcgacgtg ggcggagctg
     3721 atgcgttcgt ggatgtcttg ggcggcgaag tagtagcgca gcattttggc ggtgcgcggg
     3781 tggcggtgtt tgccgcgcaa acggtaaaac agggcggaac ggcattggtt gaaggcggtg
     3841 atgacgccgg tgttgctcat ggcgaggtcg atgtggcggt tgcctatcca ggctgcctca
     3901 tcggggtcga agaagtcggc tttggcttcg aggtagccgc cgagtgcgtc gtaggcgttg
     3961 gcgacgcttt cttggacggg gcggtggggc aggatgattt ggaacaggat gatggcggtg
     4021 ctgtacagta cggtgccgca taaaatcatg aaggggttgg tcagccagta ggtttcgggg
     4081 gtgtaggtaa gtgtggtgta ggtggcgacg gcgagtgcgc cgaaggcgaa ggtgcggtat
     4141 ttcagcccga ccgcgcctaa aatggtaaag ccgaaggtca tcagggtcat ggcgaggatg
     4201 aagggcagcc ctgtgccgag ggtgctttgt gccgtgagcg aggagagggt aaacagggcg
     4261 acggtggcga tgatgttttt cagccgtccg gtcaggcggt tgtccaaatc gacaaggccg
     4321 ccggcgatga tgccgagtac gaagggcatg gcgagcttgg gttcgcctag ctgccagacg
     4381 atggaggcgg cggtaaaaac actggcgaaa acgggaagcg aggtaatgag cagaggcttg
     4441 aggagtgggg ttttcatggt tttaccggtt tattgttatg aagtgaatat agtggattaa
     4501 caaaaaccag tacggcgttg cctcgcctta gct
//
LOCUS       DAXHNP010000156         4373 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.156, whole genome shotgun sequence.
ACCESSION   DAXHNP010000156 DAXHNP010000000
VERSION     DAXHNP010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.156"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(69..2045)
                     /locus_tag="ACFM5C_001816"
     CDS             complement(69..2045)
                     /locus_tag="ACFM5C_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFC6069467.1"
                     /translation="MNEFSLAPIVVVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
                     MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGVTMLSVM
                     GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
                     PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
                     FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
                     FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
                     GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
                     KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSA
                     GEPVSFGDAKRREVLEAAGLGRAKMVVLTLNNMHETQHVLDNVLSMYPNMPVYVRATN
                     DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
                     LFVGSDDEAGFGENGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
                     NPDASFTLEGGDVLVVAGKKEEIISFENWSLQGI"
     gene            2194..3033
                     /locus_tag="ACFM5C_001817"
     CDS             2194..3033
                     /locus_tag="ACFM5C_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HFC6069468.1"
                     /translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
                     GEAVIRDISALLGKPLVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
                     TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
                     RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDR
                     LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQN
                     TAS"
     gene            3234..4265
                     /gene="gap"
                     /locus_tag="ACFM5C_001818"
     CDS             3234..4265
                     /gene="gap"
                     /locus_tag="ACFM5C_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6069469.1"
                     /translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
                     AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
                     FTSKEKAKVHLESGAKKVLISAPGGDDVDATVVYGVNDSILTADMTVVSNASCTTNCL
                     SPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
                     VGLVLPELKDKLDGLAIRVPTVNVSLVDLNFQAARDTTIEEINALMKAASEAGALKGV
                     LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMIKVFAWYDNEWGFSCQMLNTARRM
                     FGLEVRPLK"
BASE COUNT         1118 a         1466 c         1002 g          787 t
ORIGIN      
        1 tgaattttgc gaaagcgtta ttaaaccaaa taaccggaaa tggcgcaagc cttatttcgg
       61 catttcattt atattccctg caaactccag ttttcaaaag agataatttc ttcttttttg
      121 cctgcgacca ccaacacgtc accgccttcc aatgtaaacg aggcatccgg gttttcaatc
      181 cggcctgtgc ggcggcggac gaacaagagt ttgatgccgt aagccgccat cggaagcgtg
      241 ccgactgttt tgccgacggc gtatgcttct gcagccaaag gaaaggcgtg gcggacggtt
      301 tcgccatttt cgccgaatcc tgcctcatca tcactaccga caaacaaacc ctccaacgcg
      361 gcataacggc tgtggcggat atttgccatc gtctgataga cgtgccggta cgacgcgccg
      421 ttgcctaaca tcgcatagcc tgccagcacg agtccggttt ctttggtgtc cgacacggct
      481 tcttccgcac ctatatcggt aaacgttttc acataatcgt cgttggtggc gcgcacatat
      541 acgggcatat tgggatacat ggacagcaca ttgtctaaaa cgtgttgcgt ttcgtgcata
      601 ttgttgagcg tcagcaccac cattttcgcc cgccccaaac cggcggcttc caatacttcc
      661 ctgcgtttcg catcgccgaa cgacaccggt tcgcccgcac ttctggcaac ctgcacccgc
      721 gcaatgtcca agtcgagcgc gaaatacgga atatcctctt gggcaaggac gcgtccgacc
      781 gtctgcccgc ccctgccgaa gccgacaatc agcacatggt cggacttgct catggtttct
      841 accagcatac tgtgcagatc gagcgacttc atgtcccagc ttgacttgac caaacgcccg
      901 accagcgcat cgctgccgcc caagaggaag ggcgcgataa tcatcgacag cagcaccgcc
      961 gccgtcgccg cctgttccca ttctggcgaa accatatcaa gctgcccggc aatggccagc
     1021 atcacgaagc cgaactcgcc gccttgtgcg agatacaaag ccgttttgag gctgtcgccg
     1081 accgaatgtt tcattttgaa ggcaatggca aacacaacca gtgccttcaa caccagcagc
     1141 attgccaaca gcatcaatac ctgccgccag ccgccgatca atgcctgaat gtccagcttc
     1201 atgccgaccg tgataaagaa aaagccgagc aaaatatcgc ggaacgggcg gatgtcgtct
     1261 tcgacttgga aacggtattc cgtttccgaa agcagcatcc ccgccacaaa cgcgcccaac
     1321 gccatagaca aaccttccag ctcagtcaga taagccacac ccaaggttac cagcagcaca
     1381 ttgatcataa agagttcgga cgatttgcgt tttgccacca tcctgaacca tcgcgacata
     1441 attttgctgc cgacgaaaaa cagcagcccc agcgtcagca gcatttttgc aaacgccaaa
     1501 cccaaggccg cccaaatatt tccgtcccct ccgcccgcca gcgcgggaat cagaatcatc
     1561 agcggcacga cggcgatgtc ctgcatcagc agcacgccca tcgccatctg accgtgcggc
     1621 tgccccaatt ccgtcttttc cgacaaaatc cggctcacaa tcgccgtgga cgacatcgcc
     1681 aacgcgcccg acacggcaaa cgcccaattg aacggcacgc ccgtcagcat cagtatgccc
     1741 attaccgaca gcatcgtaac gccgacctgc aaaccgccca gcccgaatac cagccgcctc
     1801 atcgccctca acttgggcag cgagaactcc aaaccaatgc tgaacatcag gaacacaatc
     1861 ccgatttcac ccaaataatc cgtcgcatgg cttttcggaa tcaggctgag cataccgggc
     1921 cccgccaaaa agcccaccag caggtagccc agcatggagg gaatgttgaa cttgcggcac
     1981 aggatcaccg taatgaccga caccagcaaa acaaccacaa taggggcaag cgaaaattcg
     2041 ttcatagacc gtccgaacag gaaaatacag aaaaatgccg tctgaaacgg catacgccgc
     2101 cgtattataa caaaacaccg cgcaccatcc gaaacgggcg cggcatacaa ttctgctaaa
     2161 atacgccctt tcgattttga gccgcacacc gacatgaccg ccacagccgc cgccatagac
     2221 cgcctgcttc cccaaaccca atgccgcgaa tgcggctacg acggctgcct gccctacgca
     2281 caggcagtcg caacaggcga agcgtacaac ctctgcgccc cgggcggaga agccgtcatt
     2341 cgggacattt ccgccctgct cggcaaaccc cttgtcgcac ctgccaaaac ccaagccaaa
     2401 gcactcgccc ggatagacga aaccgcctgt atcggctgca ccgcctgcat ccgcgcctgc
     2461 cctgccgatg ccattatggg tgcgggcaaa cttatgcaca ccgtcatcgc cgacgaatgc
     2521 accggctgcg gactctgcgt cgccccctgc cccgtcgact gcatccatat gcagcccgtt
     2581 gccgacaccg tcctgccccg cgcgcgccgc ttcagcctgt ccgccgacag ccgttttgcc
     2641 gccgccgaac acgcgcgtgc gcgctacctc aaacgcaacg aacgcaaaca gcgcgaagcc
     2701 gacgaacgca aggccatgct tgccgaacgc gaagccgccg tccgcaacgc gcgtccgcaa
     2761 acacccgaca caccgaaaaa accggcgttt aaccctgccg acctcatcgc caaagccatg
     2821 gcaaaagcgc aaacccaaca agaccgcctc gccgccgccg acaaccgcaa agactatcag
     2881 gcgaaacaga tagccgaagc ccgcgaacgc gccgagttgc gccgcgccca acgcgatatg
     2941 aaatacggca gcgacagcga aaaagccgcc gccctcgaat atctcaaaca atacaaagcc
     3001 aaacaggaag ccgcacagaa taccgcctcc tgacccttcc ctgatatgcc gtctgaaaac
     3061 cgtttcagac ggcattttat caagctctcc gtccgccgca cccgtgccgt ccgcatctta
     3121 ccgcccaccc ttccggccgc gccgttttca ataaaatatt aattacacgc cactacaaat
     3181 ttgctataat ccgccccgaa aatctaccca acccctcaac aaaggaacaa accatgggca
     3241 tcaaagtcgc catcaacggc tacggacgca tcggccgcca ggttttgcgc gccatctacg
     3301 attatcagat tcaagaccaa ctccaaatcg tcgccgtcaa cgccagcggc agccttgaaa
     3361 ccaacgccca cctcaccaaa ttcgacaccg tgcacggacg ctttgaagcc gacgtatccc
     3421 acgacggcgg caacctcatc gtcaacggcg acaaaatccc cttcttctcg acccgcaacc
     3481 ctgccgaact gccgtggaaa gaactcggtg tcgatttggt catggaatgc accggcgcgt
     3541 tcaccagcaa agaaaaagcc aaagttcatc tggaaagcgg cgcgaaaaaa gtcctcattt
     3601 ccgcaccggg cggcgacgat gtcgatgcaa ccgtcgtgta cggcgtgaac gacagcatcc
     3661 tgaccgccga catgaccgtc gtttccaacg cttcctgcac caccaactgc ctctcgccgg
     3721 ttgccaaagt gttgagcgaa agcgtcggca tcgtcaaagg cgcgatgacc accatccacg
     3781 cgctgaccaa cgaccaaacc gttaccgacg tgcgccacaa agacctgcgc cgcgcccgca
     3841 gcggcgtgga aaacatgatt ccgaccaaaa ctggcgcggc aaaagccgtc ggactggtac
     3901 tgcccgaatt gaaagacaaa ctcgacgggc ttgccatccg cgtgccgacc gtcaacgtat
     3961 cattggtaga tttgaacttc caagccgcgc gcgacacgac aatcgaagaa atcaacgcac
     4021 tgatgaaagc cgcctcggaa gcaggcgcgc tcaaaggcgt tttaggctac aacaccctgc
     4081 ccttggtttc catggacttc aaccacacca ccgaagccag ccacttcgac gcaacactga
     4141 ccaaagtcgt tgacggcaac atgattaaag tcttcgcatg gtatgacaac gaatggggct
     4201 tcagctgcca aatgctgaac accgcacgcc gtatgttcgg acttgaagtg cgcccgctca
     4261 aataagcaat aaaccgtcaa acaaaatgcc gtctgaaacc cgatgttttc aagttccaga
     4321 cggcattttt catttttcac cgtgatttta cccggctgtc gtcatttcta att
//
LOCUS       DAXHNP010000157         4309 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.157, whole genome shotgun sequence.
ACCESSION   DAXHNP010000157 DAXHNP010000000
VERSION     DAXHNP010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.157"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(153..2081)
                     /gene="dnaK"
                     /locus_tag="ACFM5C_001819"
     CDS             complement(153..2081)
                     /gene="dnaK"
                     /locus_tag="ACFM5C_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFC6069470.1"
                     /translation="MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLD
                     GGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAW
                     VKAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGMDKGDNKDRKVAVYDLGGGTFDISIIEIANLDGDKQFE
                     VLATNGDTFLGGEDFDQRLIDHIIAEFKKEQGIDLKQDVMALQRLKEAAEKAKIELSS
                     GQQTEINLPYITMDATGPKHLAMKITRAKFESLVEDLITRSIEPCKIALKDAGLSTGD
                     IDDVILVGGQSRMPKVQEAVRDFFGKEPRKDVNPDEAVAVGAAIQGEVLSGGRSDVLL
                     LDVTPLSLGIETMGGVMTKLIQKNTTIPTKASQVFSTAEDNQSAVTIHVLQGERERAS
                     ANKSLGQFNLGDIAPAPRGMPQIEVTFDIDANGILHVSAKDKGTGKAANITIQGSSGL
                     SEEEIERMVKDAEANAEEDKKLTELVASRNQAEALIHSVKKSLADYGDKLDAAEKEKI
                     EAALKEAEEAVKGDDKAAIDAKTEALGAASQKLGEMVYAQAQAEAQAGESEQANASAK
                     KDDDVVDADFEEVKDDKK"
     gene            complement(2289..2561)
                     /locus_tag="ACFM5C_001820"
     CDS             complement(2289..2561)
                     /locus_tag="ACFM5C_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069471.1"
                     /translation="MKKTGKYLIYAAAFTAFCFAFQENRSEAKQPDITLSASLCEQFN
                     ILNAKDMDAEQVSLSKECDIIESSHDWEKEYGNLNEQEMLAGIVYE"
     gene            2747..3433
                     /locus_tag="ACFM5C_001821"
     CDS             2747..3433
                     /locus_tag="ACFM5C_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6069472.1"
                     /translation="METFKDRLVFLWKSEAKQAKIASDIEMTIAGFSRIWNEGGLPKS
                     ETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFVPRYDIRA
                     AAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGDSILVN
                     HGENTPRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDDVEII
                     GRVEWFGRTI"
     gene            3565..3903
                     /gene="erpA"
                     /locus_tag="ACFM5C_001822"
     CDS             3565..3903
                     /gene="erpA"
                     /locus_tag="ACFM5C_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HFC6069473.1"
                     /translation="MSDESPIIFTDSCCAKVADLIAEENNPDLKLRVFVNGGGCSGFQ
                     YGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAET
                     TCGCGSSFSV"
     gene            3920..4066
                     /locus_tag="ACFM5C_001823"
     CDS             3920..4066
                     /locus_tag="ACFM5C_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069474.1"
                     /translation="MPSERSDGIFTFGKYIIGMNSHIIRLFEDESGFPKGTGGTVSGV
                     FVPL"
     gene            4063..>4309
                     /locus_tag="ACFM5C_001824"
     CDS             4063..>4309
                     /locus_tag="ACFM5C_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069475.1"
                     /translation="MIEMSKDYRNDLYDVYVSYPPQVDRGLIRECLRENLGEEKAEGL
                     IESLDSKPQVLVEEKCTWAKREELHDYFSYLGLDIITR"
BASE COUNT          975 a          859 c         1149 g         1326 t
ORIGIN      
        1 aaaaaatttc cagagaaccg atacaacagt tggaacttgg gtttgggaat attacggtag
       61 atgaacttgg aacctctgtt atgctatggt cttttatctc aattgaaaaa agcgcgaatc
      121 aaacggttcg cgcttttttc agacggtatt aattattttt tgtcgtcttt tacttcttca
      181 aagtcggcat ctacgacatc atcgtctttc tttgcagaag cattggcttg ttcgctttcg
      241 cctgcttggg cttcagcttg tgcttgagcg taaaccattt cccccagttt ttggctggct
      301 gcgcccagcg cctcggtttt ggcatcgata gcggctttgt cgtcgccttt aactgcttct
      361 tcggcttctt tcagcgcggc ttcgattttt tctttctcgg ctgcgtcgag tttgtcgccg
      421 tagtcggcca aagatttttt cacagagtga atcagggctt cggcttggtt gcgggaagcg
      481 accaattcag tcagtttttt atcttcctcg gcattggctt cggcatcttt caccatgcgt
      541 tcgatttctt cttcgctcaa acctgaagaa ccttggatgg tgatgttggc tgctttgcca
      601 gtgcctttgt ctttggcgga aacgtgcagg atgccgttgg cgtcgatgtc gaaggttact
      661 tcgatttgcg gcataccgcg cggtgcaggt gcgatgtcgc ccaagttgaa ctgacccaaa
      721 gatttgttgg cagaagcgcg ttcgcgttcg ccttgcagta cgtggatggt tactgcgctt
      781 tggttgtctt cggcggtaga gaacacttgc gacgctttgg tcgggatggt ggtgttcttc
      841 tgaatcagtt tggtcatcac gccgcccatg gtttcgatac ccaaagacag aggagttacg
      901 tccagtagca atacgtcgct gcggccgccg ctcaatactt cgccttggat cgctgcgcct
      961 acggcaacgg cttcgtcagg gttcacgtct ttgcgcggtt ctttgccgaa gaagtctctc
     1021 acggcttctt gtactttcgg catacgggac tgcccgccga ccaagattac gtcgtcgatg
     1081 tcgccggtgc tcaagccggc atctttcaat gcaattttgc aaggttcgat agagcgggta
     1141 atcaggtctt caaccaggct ttcgaatttg gcgcgggtaa ttttcatcgc caagtgtttc
     1201 gggccggttg cgtccatggt gatgtacggc aggttaattt cggtttgctg gccgctggac
     1261 aattcgattt tggctttttc ggcagcttct ttcaggcgtt gtagagccat cacgtcttgt
     1321 ttcaaatcaa tgccttgttc ttttttgaac tcggcgatga tgtggtcgat gaggcgttgg
     1381 tcgaagtctt caccgcccaa gaaggtatcg ccgttggttg ccaatacttc gaattgtttg
     1441 tcgccgtcga ggttggcgat ttcgatgatg gaaatatcga aagtaccgcc gcccaagtca
     1501 tatacggcta ctttgcggtc tttgttgtcg cctttgtcca taccgaatgc caaagcggct
     1561 gcggtcggct cgttgatgat gcgtttcacg tccaaaccgg cgatacggcc tgcgtctttg
     1621 gtggcttgac gttggctgtc gttgaagtag gcagggacgg taatcacggc ttcggttact
     1681 ttttcgccca agtaagcttc ggcggcttct ttcattttac gcaggacttc tgcggaaatt
     1741 tgaggaggag acagctcttt gccttgtgct tttacccatg cgtcgccgtt gttggctttg
     1801 atgatttcga aaggcataga ttcgatgtcg cgttggactt ctttgtcttc aaatttgtgg
     1861 ccgatcaggc gtttggcggc gtaaatggtg tttttagcgt tggttacggc ttggcgtttg
     1921 gcaggcgcac cgacgaggat ttcgccgccg tccaaataag cgataacgga cggcgtggtg
     1981 cgtgcgcctt ctgcgttttc gatcactttg gtttgaccgt tttcggaaat ggccaaacaa
     2041 gagttggttg tacctaagtc gataccgatt acttttgcca tgtggataat cctatttgat
     2101 tttgcttatt ttgagaaata tgttggaaca ttttgtcccg atgggctgta aatagggcgg
     2161 gcggcgggct gtttcaagct acagcatggc tataagtata taactttatg aatatattgg
     2221 ttttatattt gatttaatac atttggctcc aatgcattta agcataatat ttcaaatggc
     2281 aggcaggttt attcatagac gatgccggcg agcatttcct gttcgttcaa gttgccgtac
     2341 tctttttccc agtcgtgtga agactcgatg atgtcgcatt ctttggaaag ggagacttgt
     2401 tctgcatcca tatctttggc gttcagtatg ttgaattgtt cgcacaggga tgcggataaa
     2461 gtgatgtcag gctgtttggc ttcagaacgg ttttcttgga aggcaaagca gaatgcggta
     2521 aatgccgcag catagataag atatttgccg gttttcttca ttttctatcc tttttctgtc
     2581 aactcaggat taaacctatg gaaaatctta aaaattatgt attgagtaag aaaaatcata
     2641 atttaaattt agtttatcat agttgtttcg tttttgggat agctaaggta aaatatattt
     2701 catgtttact ttagatgatt gaatgaaggg gagcggaagg atatttatgg aaacctttaa
     2761 agacagactg gtttttttat ggaaaagcga agcgaagcag gcaaaaatcg catccgatat
     2821 tgaaatgacg attgcgggct tcagcaggat atggaatgaa ggcggtctgc cgaagtctga
     2881 aacattaaaa aaaatcaagc agttgaaggg gtgtagtatc gattggctgc tgaccgggga
     2941 gggtaatccg tttccggatg aagccccaaa aaaatccctt gcttacgata ccttgggaaa
     3001 tgaagtcgat acggacgagt ttgtctttgt gccgagatat gatattcggg cggctgcggg
     3061 atacgggcag tttgtcgatc atgaggaacc ggtatttaca atggcgttca gacggcattg
     3121 gattgagaat tatgttaccc gcgatacgaa aaacctgtct gtaatttccg tcaaggggga
     3181 ttcgatggag ggggttttga atgacggcga ttcgattttg gtcaatcatg gtgaaaatac
     3241 gccgagggac ggtctgtatg tgttgcggat taatgaaaat ctgctggtta aacgtttaca
     3301 gattgtaccg ggcgggatta tcaatgtgat ttctgcaaac gaggcttatc ctgcttttga
     3361 aatcaatttg aacgatttga ccgatgatgt ggagattatc gggcgtgtcg agtggttcgg
     3421 caggacgatt tgagtttggg gcttgaaatt gcaggcggtc aaacttatct attggaacaa
     3481 ttcctttttc aaaggcgaag cctgcttgcc tttaaagggg gtttgagaga gaatgcagaa
     3541 aatattatat taaggaataa caccatgtcg gatgaaagcc ctattatttt tactgacagc
     3601 tgctgtgcca aagttgccga tttgattgcc gaagaaaaca atcccgattt gaaattgcgg
     3661 gtttttgtca atggcggcgg ctgttcgggt ttccagtacg gatttacttt tgacgaaatc
     3721 aaaaacgacg acgattttga aattgagaaa aacggtttgg tctttttggt cgatccgatg
     3781 agctatcaat atctggtcgg tgcggaaatc gactatacgg aaagtttgca gggttcgcaa
     3841 ttcgtcatcc gcaatccgaa tgcggaaaca acctgcggtt gcggatcgtc gttttccgta
     3901 tgaccgcttg gtttgtgtga tgccgtctga acgttcagac ggcattttta cttttggaaa
     3961 atatattatc gggatgaatt cacatataat ccgattgttt gaagatgaat cgggtttccc
     4021 gaaaggaacg ggcggaacgg tatcaggcgt atttgttccc ttatgattga gatgagtaaa
     4081 gattaccgaa atgatttgta cgatgtatat gtttcctacc cgccccaagt ggatcgcggg
     4141 cttatccggg agtgcctcag ggagaatctc ggcgaggaaa aggcggaagg attgatcgaa
     4201 tcgctcgatt ccaaacctca agtgctggtt gaggaaaaat gcacttgggc gaaacgggaa
     4261 gagttgcatg attatttcag ctatttgggt ttggatatta ttacccgga
//
LOCUS       DAXHNP010000158         4259 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.158, whole genome shotgun sequence.
ACCESSION   DAXHNP010000158 DAXHNP010000000
VERSION     DAXHNP010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.158"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            536..2263
                     /gene="ilvB"
                     /locus_tag="ACFM5C_001825"
     CDS             536..2263
                     /gene="ilvB"
                     /locus_tag="ACFM5C_001825"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HFC6069476.1"
                     /translation="MQLSGAQIIVQSLKAEGVEYVFGYPGGAVIEIYDALFQLNKFKH
                     ILTRHEQAAVHAADAYARVSGKVGVALVTSGPGVTNALTGIATAYTDSIPMVVISGQV
                     GNSLIGTDAFQEVDTVGITRPCVKHNFLVTDINELAETIKKAFQIAASGRPGPVVVDV
                     PKDVTQAMAKFSYPQEDIFIRSYQPVVQGHIGQIKKAVQMLASAKRPVVYFGGGVVLG
                     NASEELTRFVRMTGAPCTGTLMGLGAYPSGDRQFLGMLGMHGTYEANLAMQNADVVLA
                     VGARFDDRVVSVPSKFFEKAKKVIHIDVDPSSIAKRVKADIPIVGDVKNVLSEMVALW
                     QKQESVPSEDALGKWWKTIEEWRSRDCLWFDNGSEIIKPQYVIQKLAEITGNSAIITS
                     DVGQHQMFAAQYYPFERPRQWLNSGGLGTMGVGLPYAIGAKLAAPDQDVFCITGDGSI
                     QMNIQELSTCFQYRIPVNVITLNNGYLGMVRQWQEIYYGGRESETYFDSLPDFVKLAE
                     AYGHIGIRVDKKSDVEGALLEALNQKDRLVFIDFLTDQKQNVMPMVGNGKGLDEMVLP
                     PHMRADEKA"
     gene            2274..2765
                     /gene="ilvN"
                     /locus_tag="ACFM5C_001826"
     CDS             2274..2765
                     /gene="ilvN"
                     /locus_tag="ACFM5C_001826"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFC6069477.1"
                     /translation="MRHILSVLIENESGAMSRVVGLFSARDYNIDSLAVAPTEDKTLS
                     RMTIVTHGDEQVIEQITKQLNKLIEVIKVVDLNESRFVERELMLVKVRAAGKDRDEFL
                     RLTEIYRGSIIDVTDRSYTIEITGSTDKLDSFLETVGRAQILETVRTGAAGIGRGERI
                     LKI"
     gene            2832..3125
                     /locus_tag="ACFM5C_001827"
     CDS             2832..3125
                     /locus_tag="ACFM5C_001827"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HFC6069478.1"
                     /translation="MSNIKIVALVTVKPEYTETLAAQFKELVKASRAEEGNISYDLHQ
                     EIGKPNRFVFVENWKSQAAIDEHNASAHFQAFVQSVDGKTEALEIVLMNEVAD"
     gene            3205..4218
                     /gene="ilvC"
                     /locus_tag="ACFM5C_001828"
     CDS             3205..4218
                     /gene="ilvC"
                     /locus_tag="ACFM5C_001828"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFC6069479.1"
                     /translation="MQVYYDKDADLSLIKGKTVAIIGYGSQGHAHAANLKDSGVNVVI
                     GLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVYHAEVTANLKEGATL
                     AFAHGFNVHYNQIVPRTDLDVIMVAPKGPGHTVRSEYKRGGGVPSLIAVYQDNSGKAK
                     DIALSYAAANGGTKGGVIETTFREETETDLFGEQAVLCGGVVELIKAGFETLTEAGYA
                     PEMAYFECLHEMKLIVDLIFEGGIANMNYSISNNAEYGEYVTGPEVVNASSKEAMRNA
                     LKRIQTGEYAKMFIQEGNVNYASMTARRRLNADHQVEKVGAQLRAMMPWITANKLVDQ
                     DKN"
BASE COUNT         1107 a         1020 c         1077 g         1055 t
ORIGIN      
        1 caatatatta agtcgttgtt agccctcttg gttctgtcaa tgccgtccaa tacagtccgg
       61 tgcaatgagc cattttcagg aagtatggtt gggaatattt ttgatatatc aaaaataaaa
      121 tcaagttcaa tcaatatccc gagtctttat tgggatgaaa ccatgtaaat tttacaattc
      181 ttgatatcga agaagggttt ttcacatctg cccctcctgc ataaactgtc aacaatttcc
      241 atctttcaaa aaaggtactc ctgattttat tcttttaaaa tcaatcaata atttctctgc
      301 tttcaaaaaa tattaaaaga tgaaagattt ttcttgattg aactgtcggt ttgcgttatc
      361 gtttctactc tttttcacaa actctgtgtt cctttccaat tgattggata atccgtctgt
      421 tgccgtgttc ccccaatgcg cgtaccctaa atcgctgctt ggtggaattg cattacaggt
      481 gctgtggcaa agcggtttgt ccctattggt ttgaaaccgt ataaaagagg tcgttatgca
      541 gttatcaggc gcgcaaatca tagtgcagag tctcaaagcc gaaggtgtcg agtacgtttt
      601 cggttatccc ggcggtgcgg ttatcgaaat ctacgatgcc cttttccaac tcaataaatt
      661 caagcacatt ctgacccgtc acgagcaggc ggcagtacac gcggcagatg cgtatgcgcg
      721 cgtcagcggt aaggtgggcg tggcattggt tacatccggc ccgggcgtta ccaatgcact
      781 gaccggtatt gctactgcct atacggattc gattccgatg gtggtcatca gcgggcaggt
      841 aggcaattcc ctgattggta cggatgcgtt ccaagaagtt gatacggtgg gtattacccg
      901 tccgtgcgtc aaacacaatt tcctggttac ggacatcaat gagttggcgg aaaccattaa
      961 aaaggcgttc caaattgccg caagcggccg accggggccc gtggtggttg atgtcccgaa
     1021 agatgttacg caggcgatgg cgaaattcag ctatcctcag gaagacattt ttatccgttc
     1081 gtatcaaccg gttgttcaag ggcatatcgg tcagattaaa aaggccgtgc agatgttggc
     1141 atctgccaaa cgtccggtcg tctattttgg cggcggcgtg gtgttgggta atgcttctga
     1201 agagctgacc cgatttgtcc gaatgacggg tgctccgtgc acgggtacgc tgatgggctt
     1261 gggcgcttat ccttccggcg accgccaatt cctcggtatg ctcggtatgc acggtactta
     1321 cgaggcaaac cttgccatgc agaatgcgga tgtcgttctt gccgtaggtg cgcgttttga
     1381 cgaccgtgtg gtttccgtac cgtccaaatt tttcgagaag gcgaagaagg ttatccatat
     1441 cgatgtcgat ccttccagca tcgccaaacg cgtgaaggcg gacattccga ttgtcggcga
     1501 cgtgaaaaac gttttgtccg agatggttgc gctgtggcaa aaacaagagt ccgtgccgtc
     1561 tgaagatgct ttgggcaaat ggtggaaaac catagaggaa tggcgttccc gcgattgctt
     1621 gtggtttgac aacggcagcg aaattatcaa gccacaatat gtgattcaga agcttgccga
     1681 gattaccggc aattcggcaa tcatcacatc ggatgtaggg cagcatcaaa tgtttgcggc
     1741 tcaatattat cccttcgaac gtccgcgcca atggctcaac tccggcggtt tgggtacgat
     1801 gggcgttggt ctgccttatg cgattggtgc aaaacttgcc gccccggatc aagacgtatt
     1861 ctgtattacc ggcgacggct cgatccagat gaacatccaa gagctgtcca cctgtttcca
     1921 atatcggatt ccggttaacg tcattacgct gaacaacggt tatctcggta tggtacgcca
     1981 gtggcaggaa atatattacg gcggccgaga gtcggaaact tatttcgatt ctttgcccga
     2041 tttcgtcaaa cttgccgagg catacggtca tatcggcatc cgcgtggaca agaagtctga
     2101 tgtggaaggt gcgttgttgg aagcattgaa ccaaaaagac aggctggtgt ttatcgactt
     2161 cctgaccgac cagaaacaga atgtgatgcc catggtcggt aacggcaaag gtttggacga
     2221 aatggtactt ccgccgcata tgcgtgcgga cgaaaaggcg taaggagagg caaatgcgac
     2281 atatcttatc tgttctgatt gaaaacgaat caggtgcgat gagccgcgtg gtcggtttgt
     2341 tctctgcacg cgattacaat atcgattctt tggcggttgc gccgaccgaa gacaaaaccc
     2401 tgtcccgtat gaccatcgtt acccacggcg acgagcaggt catcgaacaa atcaccaagc
     2461 aactcaataa attgattgaa gtgattaaag tggtcgattt gaacgaaagc cgttttgtcg
     2521 aacgcgaact gatgttggta aaagtccgtg ccgccggcaa agaccgcgac gaatttttac
     2581 gcttgaccga aatctaccgg ggcagcatca tcgacgtaac cgaccgcagc tatacgattg
     2641 aaattaccgg ctcgacagac aagctggatt cctttttgga aacggtcgga cgcgcccaaa
     2701 ttttggaaac cgtacgcaca ggcgcggccg gcatcggtcg cggtgagcgt attttgaaaa
     2761 tttaacgccg taacctttca gacggcacgg tatttgaatg tcgtctgaaa aacgaacggc
     2821 aggagagatt tatgtcgaac attaaaattg tcgcactggt taccgtcaaa ccggaataca
     2881 cagaaacact ggcagcacag tttaaagaac tggtcaaagc cagccgtgca gaagagggca
     2941 acatcagcta cgatctccat caggaaatcg gcaaaccgaa ccgttttgtt ttcgtggaaa
     3001 attggaaatc tcaagcagct attgacgaac ataacgccag cgcgcatttc caagccttcg
     3061 tccagtccgt cgacggcaaa accgaagcgt tggaaatcgt attgatgaat gaagttgccg
     3121 attaagcggc acactctgtt taacccgtcc gaagccgctc aacattttaa ggcttcgaca
     3181 accatttacc ttaaaggaaa tcaaatgcaa gtctattacg ataaagatgc cgatctgtcc
     3241 ctaatcaaag gcaaaaccgt tgccatcatc ggttacggtt cgcaaggtca tgcccatgcc
     3301 gccaacctga aagattcggg tgtaaacgtg gtgattggtc tgcgccaagg ttcttcttgg
     3361 aaaaaagccg aagcagccgg tcatgtcgtc aaaaccgttg ctgaagcgac caaagaagcc
     3421 gatgtcgtta tgctgctgct gcctgacgaa accatgcctg ccgtctatca cgccgaagtt
     3481 acagccaatt tgaaagaagg cgcaacgctg gcatttgcac acggcttcaa cgtgcactac
     3541 aaccaaatcg ttccgcgtac cgacttggac gtgattatgg ttgcccccaa aggtccgggt
     3601 cataccgtac gcagtgaata caaacgcggc ggcggcgtgc cttctctgat tgccgtttac
     3661 caagacaatt ccggcaaggc caaagacatc gccctgtctt atgcggctgc caacggcggc
     3721 accaaaggcg gtgtgattga aaccactttc cgcgaagaaa ccgaaaccga tctgttcggc
     3781 gaacaagccg tattgtgcgg tggcgtggtc gagttgatca aagcaggttt tgaaaccctg
     3841 accgaagccg gttacgcgcc tgaaatggct tacttcgaat gtctgcacga aatgaaactg
     3901 atcgttgacc tgattttcga aggcggtatt gccaatatga actactccat ttccaacaat
     3961 gcggagtacg gcgaatacgt taccggccct gaagtggtca atgcttccag caaagaagcc
     4021 atgcgcaatg ccctgaaacg catccaaacc ggcgaatacg caaaaatgtt tatccaagag
     4081 ggtaatgtca actatgcgtc tatgactgcc cgccgccgtc tgaatgccga ccaccaagtt
     4141 gaaaaagtcg gcgcacaact gcgtgccatg atgccttgga ttactgccaa caaattggtt
     4201 gaccaagaca aaaactgatt gttttcaaac gggactgcct acacatggtg taggcagtt
//
LOCUS       DAXHNP010000159         4245 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.159, whole genome shotgun sequence.
ACCESSION   DAXHNP010000159 DAXHNP010000000
VERSION     DAXHNP010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.159"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(268..717)
                     /locus_tag="ACFM5C_001829"
     CDS             complement(268..717)
                     /locus_tag="ACFM5C_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069480.1"
                     /translation="MNNFNEYSLCQEKNLFFKLPDSDFLELEKHIQIPYDLFCFWKEI
                     GYGFLTVNESGSIRSESDNRIMDSLSILDILIGESEQVSSNFIIEPYQVPFFERFSEY
                     FICFDRRNLDKPKQPVYWIWDMENPLADSIKSFIYKLFENPNFLNEI"
     gene            complement(714..854)
                     /locus_tag="ACFM5C_001830"
     CDS             complement(714..854)
                     /locus_tag="ACFM5C_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069481.1"
                     /translation="MMPTIFNHLENNGGNIWQNITPARYPEQHQGGIHQADGSLKILL
                     LL"
     gene            complement(939..1460)
                     /locus_tag="ACFM5C_001831"
     CDS             complement(939..1460)
                     /locus_tag="ACFM5C_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 42 family protein"
                     /protein_id="HFC6069482.1"
                     /translation="MIFGNPYKFAIWIEEIDEWSSENFSEGIFTFFVNGDMIPQELPN
                     TSTFLPNSLRSIQQFISIIDDLECPNLFDLDYCNAYIFLNDAVHYRNMKLSEEESYSY
                     WKYCITEYIDNHEEKDNIWYLSNKHNEKLLYLNNNIIKESVFKKGYIKNIMEKIIMKY
                     NYILNGNDKIYLT"
     gene            complement(1890..2198)
                     /locus_tag="ACFM5C_001832"
     CDS             complement(1890..2198)
                     /locus_tag="ACFM5C_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069483.1"
                     /translation="MDVFPELNIHCFYDDKNQLEAIEIFEPNKFFLEDISFNWLGKIN
                     DEIISYLYKSGINDFEIDDLGIRLLNIPVSTIINSIGKVECCYLDFSNRDTKFYVKQV
                     "
     gene            complement(2649..2972)
                     /locus_tag="ACFM5C_001833"
     CDS             complement(2649..2972)
                     /locus_tag="ACFM5C_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6572 domain-containing protein"
                     /protein_id="HFC6069484.1"
                     /translation="MSILEENVIDSASIENGILILTISDHLKWDNEHLFLLQEKINSY
                     IQYIESGQIFEDFGESSYETIEIQLIYKYKPNENYRKFLYRLEGALLKLKLRFSHGTI
                     SYFYS"
     gene            complement(2972..>4245)
                     /locus_tag="ACFM5C_001834"
     CDS             complement(2972..>4245)
                     /locus_tag="ACFM5C_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HFC6069485.1"
                     /translation="RASLGQVNAYLAENQSRYDTWKEGGIGRSILHGAAGGLTTGSLG
                     GILAGSGTSLAAPYLDKAAENLGPAGKAAVNALGGAAIGYATGGSGGAVVGANVDWNN
                     RQLHPKEMALADKYAEALKREVEKREGRKISSQEAAMRIRRQILRWVDKGSQDGYTDQ
                     SVISLIGMKGEDKALGYTWDYRDYGARNPQTYNDPKLFEEYRRQDKPEYRNLTWLHSG
                     TKDTKIRQGERKNEEFALNVAEGLTSLVNPNPRIKVPILAGIRNLKNIKPTVTGSDPL
                     LAGAGNIRIPANGNVAKGDRIPDTALASKGIKHKNRKDQLEKNKKSGEDFEMEIYQKK
                     VKQGFKPQRQITVKTKSGVKTRLDIISKEGGLDVCTECKASITAPLTKNQKKAFPEIE
                     RTGATVVGKGKPGYPKGTKIEPTKVIIERKR"
BASE COUNT         1203 a          852 c          691 g         1499 t
ORIGIN      
        1 gttgtgccgg ccgtactgcc gacatggatg tggcgatgtg ctgcttttgt ctgattgccg
       61 tggtggcttg ttgaaagaaa ggtcgtctga aaccgtattt gttgtttcag acgacctttg
      121 ggctcaaacc ttgagaaccg catgcgtgcg ttccgcacac atcctacttg ttgagtttag
      181 gtttcatatg ggctacggct tgctgatttc agacgacctt tttaatttag ttgggtttta
      241 aacccaatct acgcttacta caacttacta aatttcattc aaaaaattag gattttcaaa
      301 taacttataa ataaaactct ttattgaatc agctaacgga ttttccatat cccatatcca
      361 ataaacaggt tgtttaggct tatctaaatt tcgcctatca aaacaaataa aatattcact
      421 aaatctttcg aaaaatggta cttgatatgg ctcaataata aaattagaag aaacttgttc
      481 tgactcccca attaatatat ctaaaatgga taaagaatcc ataattcgat tatcggactc
      541 tgagcgaata cttccgcttt catttacagt aagaaaacca taaccaattt ctttccaaaa
      601 gcagaataaa tcatatggaa tttggatatg cttttctaac tctagaaaat cactatctgg
      661 taatttaaaa aatagatttt tctcttggca taatgaatac tcattgaaat tattcacaat
      721 aatagaagaa tttttaatga tccatctgcc tgatgaatgc cgccttgatg ctgttcagga
      781 tacctggctg gagtaatgtt ttgccaaata ttaccaccat tattttctaa atggttgaat
      841 atggtgggca tcatacttac ttcctgttgg ctttataagc ctaccagttc tggaagatat
      901 taaaaaacac gtgcttgatg catacttaaa catagatttt atgtgagata aattttatca
      961 ttaccattta aaatataatt atatttcata attatttttt ccataatatt ttttatatat
     1021 ccttttttaa acacggattc cttaataata ttattattta aatatagcaa tttttcatta
     1081 tgcttattgg ataaatacca aatattgtct ttttcttcat ggttgtcaat atattctgtt
     1141 atacagtatt tccaatatga ataagattct tcttctgata atttcatatt acgataatga
     1201 acggcatcgt tcaaaaaaat atatgcatta caatagtcta agtcaaataa attaggacac
     1261 tctagatcat caattattga aataaactgt tgtatgctac gcaaagaatt tggtaaaaaa
     1321 gtagatgtat ttggtagttc ttgaggaatc atgtctccat tcacaaaaaa tgtaaaaatc
     1381 ccttcggaaa aattttctga actccattcg tctatctcct caatccaaat tgcaaattta
     1441 tatggattcc caaaaatcat ttagaatact ccttgaataa aatttatttt ccaggaatac
     1501 ccaatttcct acgcaattgg atattaagtt tatctattct attcctgttt aaaattcctg
     1561 cccagtgata caaattcctg ttattgccag tacctgaaaa aaattgatgc acttcaccag
     1621 ttgatttatc aaaagtaacc ctcataccgt ctttaacgga aattgactgt tgaaataatt
     1681 ctaaagaatt tttaggttct aatgatgctt catgtccagg tcttttccca ccgtgtccta
     1741 atgagtgttt ttcattagat tgatatttta attcatagct atcttcaccc tttctaaaag
     1801 ttactgtggt ttcagatgga acaggtacag atgatcctgt gcttgattct ttatctggcc
     1861 ttaaatcatt tcccgaatga ttcttcgttc tacacttgtt ttacataaaa ttttgtgtct
     1921 ctatttgaaa aatctaaata acaacattct actttaccta ttgaattgat tatagttgaa
     1981 acaggaatat taagaagcct aatacccaaa tcatcaattt caaaatcatt aattccactc
     2041 ttataaagat agcttattat ttcatcatta atttttccaa gccaattaaa agaaatatct
     2101 tctaaaaaaa acttatttgg ttcaaatatc tctatcgctt caagctgatt tttatcatca
     2161 taaaaacaat ggatattcaa ttcgggaaaa acatccatag gaacccgaga gtatgatgac
     2221 ttataaattt cttgtacatc agaactaaat attgcacgaa cttgttttcg attcagattt
     2281 gatgagataa tatttctttc tatttttttt gaactaaaat aaaaaattgc cataattttt
     2341 ttgcctaaac aatattacca ttttcgtaag atgcatagaa caaaccatgt cttatccatt
     2401 ttgttccatc ggcagacaga taacgactat atctaaattt tatttttcac tctcataaaa
     2461 aattttctgc aatattcaat atatttactt tcttaaccat agcgtaaatt cctcaggctt
     2521 atatatttca gtataagtat gacttaaagg atatgacgcc gcgtgttacg agttgcttct
     2581 tttgatttca gggtttatat aagttatggc ttgcctgggc tcgaagtgat aaagagagta
     2641 tttacttttc aactataaaa atatgagata gttccatggg aaaaccgtaa tttaagtttt
     2701 aataaagcac cttctaggcg atataaaaat tttctataat tttcatttgg tttatattta
     2761 tatataagct gtatttcaat agtctcatag ctactttctc caaaatcttc aaaaatttga
     2821 cctgattcaa tatattgaat atatgaattt attttttctt gcaacaaaaa caaatgctcg
     2881 ttatcccatt ttaagtgatc agaaatagtt aatatgagta ttccgttttc aatagaggct
     2941 gaatcaatta cattctcttc caaaatagac attatctttt cctttcaatt ataactttag
     3001 taggttcaat tttggtcccc tttggatagc ccggttttcc cttaccgacc actgttgctc
     3061 ccgttctttc aatttcagga aaagcttttt tctgattttt agtaagtggc gcagttattg
     3121 aagccttaca ctctgtacaa acatcaagac caccttcttt cgaaataata tcaagcctag
     3181 tttttacacc actttttgtt ttaactgtaa tctgtctttg cggtttaaag ccttgtttaa
     3241 ctttcttctg ataaatttcc atctcaaaat cctcaccaga ttttttattt ttttccagtt
     3301 gatctttacg atttttatgt ttgattccct tgctagccaa tgccgtatcc ggaatcctgt
     3361 cccccttcgc aacattgccg tttgcaggga tacggatatt ccccgcaccc gccaataagg
     3421 gatcgctgcc ggtaactgtc ggcttgatgt ttttcaggtt gcggatgcct gcaagaatcg
     3481 ggacttttat cctcggattg gggttgacaa ggctcgtcag tccttcggca acgttcagtg
     3541 caaactcttc gtttttccgc tctccctgcc tgattttggt gtctttcgtc ccgctgtgca
     3601 gccaggtcag gttgcggtat tcgggtttgt cctgtcggcg gtattcctca aacagcttcg
     3661 gatcgttgta ggtttgcgga tttcttgcgc cgtagtcgcg gtagtcccaa gtataaccca
     3721 aggctttgtc ttcgcctttc attccgataa gggatatgac gctttggtcg gtatagccgt
     3781 cttgggaacc tttgtccacc caacgcagta tctgcctgcg gattctcatt gccgcttctt
     3841 ggctgctgat ttttctgcct tcgcgttttt caacttcgcg cttgagggct tcggcatatt
     3901 tgtcggccaa cgccatttct ttcggatgca gctgcctatt gttccaatct acattcgcac
     3961 ccaccacagc accaccacta ccaccagttg catagccgat ggccgcaccg cccagtgcgt
     4021 tgaccgccgc tttgcctgcc ggaccgaggt tttccgccgc tttgtccaaa tacggtgcag
     4081 caagggaagt gccgctgccg gccagtatgc cgccgaggct gccggtcgtc agtccgcctg
     4141 ccgccccgtg cagtatgctc ctgcctatgc cgccttcttt ccaggtgtcg tagcggcttt
     4201 ggttttcggc aagataggcg tttacttggc cgagggatgc gcgga
//
LOCUS       DAXHNP010000160         4171 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.160, whole genome shotgun sequence.
ACCESSION   DAXHNP010000160 DAXHNP010000000
VERSION     DAXHNP010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4171
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.160"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..107)
                     /locus_tag="ACFM5C_001835"
     CDS             complement(<1..107)
                     /locus_tag="ACFM5C_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6069486.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIE"
     gene            complement(235..1485)
                     /gene="glyA"
                     /locus_tag="ACFM5C_001836"
     CDS             complement(235..1485)
                     /gene="glyA"
                     /locus_tag="ACFM5C_001836"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFC6069487.1"
                     /translation="MFSKSVTLAQYDPDLAAAIAQEDQRQQDHVELIASENYVSCAVM
                     ETQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAQYANVQPHSGSQAN
                     QAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAVTYGLDENEVLDYAEVER
                     LALEHKPKMIVAGASAYALQIDWAKFREIADKVGAYLFVDMAHYAGLIAGGEYPNPVP
                     FCDFVTTTTHKTLRGPRGGVILCRDNTHEKALNSSIFPSLQGGPLMHVIAAKAVAFKE
                     ALQPEFKQYAKQVKINAAAMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAA
                     LGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNEADARVLANLVADVLSNPE
                     DEANLAKVREQVTALCNKYPVYGA"
     gene            complement(1640..1903)
                     /locus_tag="ACFM5C_001837"
     CDS             complement(1640..1903)
                     /locus_tag="ACFM5C_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069488.1"
                     /translation="MSNQTKIQAIKQASEQIFAICETPNTALQAIHLILRHGGAGELS
                     WQVVYQRVMADKDVVGAGYLIDFAQTAENLPFDVLPLGSLVLT"
     gene            complement(1966..3741)
                     /gene="ggt"
                     /locus_tag="ACFM5C_001838"
     CDS             complement(1966..3741)
                     /gene="ggt"
                     /locus_tag="ACFM5C_001838"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036374 - glutathione hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HFC6069489.1"
                     /translation="MAKTYLLTALIMSMTISGCQVIHANQGKVNTHSAVITGADAHTP
                     EHATGLIEQKQVIASDFMVASANPLATQAGYDILKQGGSAADAMVAVQTTLSLVEPQS
                     SGLGGGAFVLYWDNTAKTLTTFDGRETAPMRATPELFLDKDGQPLKFMEAVVGGRSVG
                     TPAIPKLMETIHQRYGVLPWGKLFDTPIRLAKQGFEVSPRLAISVEQNQQHLARYPKT
                     AAYFLPNGVPLQAGSLLKNLEFADSVQALAAQGAKALHTGKYAQNIVSVVQNAKDNPG
                     QLSLQDLSDYQVVERPPVCVTYRIYEVCGMGAPSSGGIAVGQILGILNEFSPNQVGYD
                     AEGLRLLGDASRLAFADRDVYLGDPDFVPVPIRQLISKDYLKHRSQLLEQSDKALPSV
                     SAGDFIHEWVSSQAIELPSTSHISIVDKAGNVLSMTTSIENAFGSTLMANGYLLNNEL
                     TDFSFEPIKQGKQVANRVEPSKRPRSSMAPTIVFKAGKPYMAIGSPGGSRIIGYVAKT
                     IVAHSDWNMDIQDAISAPNLLNRFGSYELETGTTALQWQQALNDLGYKTDVRELNSGV
                     QAIIIEPSRLVGGADPRREGRVMGD"
     gene            complement(3909..4171)
                     /locus_tag="ACFM5C_001839"
                     /pseudo
     CDS             complement(3909..4171)
                     /locus_tag="ACFM5C_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007116440.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
BASE COUNT         1041 a          982 c          988 g         1160 t
ORIGIN      
        1 tgttcgatcg gctgccaatc aatcacttga tccaacttca atagtgggaa acggtcgatg
       61 tgtttggcaa tcatggcttg tgcggtttgc tgaaagaagg tgctcatgga acatccccta
      121 aatgtcttgg tgggaattta ggggattttg gggaattttg caaaggtttc cgcctgaaac
      181 attatgagat ttcaggcggc attggattgc ttagcggaat atttttaaaa aggcttacgc
      241 gccgtaaacg gggtatttat tgcacaaagc agttacttgt tcgcggactt tggcgaggtt
      301 ggcttcgtct tcggggttag acaatacgtc ggcaaccaag ttcgccaata cgcgcgcgtc
      361 ggcttcgtta aaaccgcgtg tggtcatggc ggcggaaccg atgcggatgc cggaggtaac
      421 gaagggtttt tccggatcat tcgggatggc gtttttgttg acagtgatgt gcgctttgcc
      481 caaagcagct tcggcggctt tgccggtaat tttcatcggt tgcaggtcaa cgaggaaaac
      541 gtggctttcg gtgcggccgg aaacgatgcg caaaccgcgt ttaaccaact cttccgccat
      601 ggcggctgca ttgattttca cttgttttgc gtattgtttg aactcgggtt gcaatgcttc
      661 tttaaacgcc acggctttgg cggcgataac gtgcatcagc gggccgcctt gcaggcttgg
      721 gaagatggaa gagttcaacg ctttttcgtg ggtattgtcg cggcacaaaa ttacgccgcc
      781 gcgaggaccg cgcagggttt tgtgggtggt ggtggtaacg aagtcgcaga atggcaccgg
      841 gttgggatat tcgccaccgg caatcagtcc ggcgtagtgc gccatgtcga caaagaggta
      901 tgcgccgact ttatcggcga tttcgcggaa ttttgcccag tcgatttgca acgcgtaggc
      961 agacgcaccc gccacaatca ttttgggttt gtgttcgagc gcgaggcgtt cgacttcggc
     1021 ataatcgagc acttcgtttt catccaaacc ataagtaacg gcattgtaga gtttgcctga
     1081 gatattaacg ctcgcgccgt gggtcaggtg gccgccgtgc gccagagaca tacccaaaat
     1141 ggtgtcgcct ggttttaaaa cggaagcgta cacggcttgg ttggcttgcg agccggagtg
     1201 cggttggacg ttggcgtact gcgcgccgaa cagttttttg acgcggtcaa tcgccaattg
     1261 ttcgacaata tcgacgtatt cgcagccgcc gtagtagcgt ttgccggggt agccttcggc
     1321 gtatttgttg gtcagctggg aaccttgcgt ttccattacg gcgcagctga cgtagttttc
     1381 agaggcaatc agctcgacgt ggtcttgctg gcgttggtct tcttgggcaa tggctgctgc
     1441 caaatcgggg tcatattgtg cgagggtaac gctttttgaa aacatgttct cggctccttt
     1501 gtgtaatcag ggtatcatga gtgttttttg tataaaaaaa tacttcaaaa cctaaggcag
     1561 atagtccata atgcgtaaat tttctttggc attatcaggt aatttattta acatgctggt
     1621 ttttagcgtc tcattacctt tatgttagta caaggctacc caaaggcaat acatcaaatg
     1681 gtaaattttc ggcagtttgt gcaaaatcaa tcaaataacc agcaccaacc acatctttat
     1741 cagccataac ccgctgatac accacttgcc aagacaactc tcctgcccca ccatgtctta
     1801 aaatcagatg aatggcttgt aatgctgtgt ttggcgtctc acaaattgcg aagatctgct
     1861 cagaagcttg cttgatggct tgtatttttg tttgattact cacaatttcc ccctatttta
     1921 atattaactt aatgcggtca aattcacaaa atacaagctt cacctctaat cacccatcac
     1981 tcgaccttct cggcgtggat cggcaccacc aaccagcctg cttggctcga taataatggc
     2041 ttgaacacct gaatttagct cacgcacgtc agtcttatag cccaaatcat ttaatgcttg
     2101 ttgccactgg agggcggttg tacccgtttc tagttcatag ctaccaaagc gatttaataa
     2161 attgggtgca ctgatggcat cttggatatc catattccag tcgctatgtg ccacaatcgt
     2221 cttagcgaca tagccaatga tacggctacc acctggggag ccgattgcca tataaggctt
     2281 gcctgcttta aatacgatgg ttggtgccat tgaggagcgt ggtctcttgc tgggctcgac
     2341 acgattggcg acctgtttgc cctgctttat tggctcaaaa ctaaagtctg tcagctcatt
     2401 attcagcagg tagccatttg ccatcaaagt tgagccaaac gcattttcaa tggaagtcgt
     2461 cattgatagc acattgcccg ccttatccac aattgatata tgactggtag aaggtaactc
     2521 aatcgcttgt gaggacaccc actcatgaat aaaatcgcct gcagatacgc taggcaatgc
     2581 cttatccgac tgctcaagca gctggctgcg atgttttagg tagtctttag aaatcaactg
     2641 gcgaatgggt actggtacaa aatcagggtc gcccaaatat acatcacgat ccgcaaacgc
     2701 aagcctagaa gcgtcgccca agagacgtaa accttcagca tcatacccca cctgattggg
     2761 tgaaaattca tttaaaatcc ccaaaatttg acccacagca atcccacctg agcttggtgc
     2821 acccataccg catacttcat aaatacgata agtcacacaa acaggcgggc gttccaccac
     2881 ttgataatca gataaatctt gtaaggataa ttgaccgggg ttatccttag cattttggac
     2941 aactgaaacg atattttggg catatttacc agtatgcaga gcttttgcac cttgagctgc
     3001 taacgcctga acactgtcag caaattctaa atttttcagc aagctgcctg cttgtagcgg
     3061 cacaccattc ggcaaaaaat aagcggctgt ttttggatag cgtgccaaat gctgctgatt
     3121 ttgctcaacc gagatggcaa gccttggcga cacctcaaag ccttgttttg ccaagcggat
     3181 cggtgtatca aataattttc cccaaggcaa tacaccgtat cgctgatgta ttgtctccat
     3241 cagtttaggg atagcaggcg tacccaccga gcgaccaccg accaccgctt ccataaattt
     3301 caatggttga ccatctttat ccaaaaataa ttccggcgtc gcacgcatcg gtgccgtctc
     3361 acgcccatca aatgtggtca atgttttggc ggtattatcc caatacaaca caaatgcacc
     3421 accgcccaag cctgacgact gtggctctac caagcttagt gtcgtctgca ccgccaccat
     3481 cgcatctgca gcgctaccgc cttgctttaa gatatcatag ccagcttgtg ttgctaatgg
     3541 attggctgac gctaccataa aatcacttgc aatcacctgc ttttgttcga tcagtcccgt
     3601 tgcatgttca ggcgtgtgag cgtctgcacc tgtgatgaca gcagaatgag tattaacctt
     3661 accttgattg gcatggatga cttgacatcc agagattgtc atagacatta tcaatgcagt
     3721 caataaatat gttttagcca caagcactcc ttcgcctgag tttgattgat gattcataca
     3781 aggcatgctg attattgtat ttaatatggc taaataattc aatccaaact atcaatcttg
     3841 accatcaaaa aaagaccgct aatgtcatca gcagtctttt ttgatattta ttttaagata
     3901 ttaagtaatc agacctttgg gctatgctct tcaatgagtg gttttagctc acctgattgg
     3961 tacatttgta ggataatatc actaccaccg attaactcac cattaaccca aagctgtgga
     4021 aaggttggcc gattggcgat gagtggtaga gtactgcgaa tttctgggtt ttctaggata
     4081 ttaacaaaag caaagggtct gccaattggg tcagcacctc tactgcacgc gctgaaaatc
     4141 cacattgggg aaactggggc gtgcctttca t
//
LOCUS       DAXHNP010000161         4156 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.161, whole genome shotgun sequence.
ACCESSION   DAXHNP010000161 DAXHNP010000000
VERSION     DAXHNP010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.161"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            337..1854
                     /locus_tag="ACFM5C_001840"
     CDS             337..1854
                     /locus_tag="ACFM5C_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6069490.1"
                     /translation="MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRLVSDK
                     WAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYD
                     AVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERH
                     FAEAAKLDLPAPVLENVGRFRKKTEGLTGWRFSGGISPAVNQNANNAAPQYCRQNGGR
                     QICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRA
                     YLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTY
                     RPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSSAKRLGESATVFGGWQFVRF
                     VPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGVAAFSTEA
                     QRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF"
     gene            complement(1915..3795)
                     /locus_tag="ACFM5C_001841"
     CDS             complement(1915..3795)
                     /locus_tag="ACFM5C_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HFC6069491.1"
                     /translation="MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDSALQKGWQ
                     KGLHSVLFADYGFGLPLTGVESERGGNLALHWFADCADTDAENWLARHSDGLPAGIST
                     PQSSVSEADYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPISLYRRLRQPVPYAV
                     LSHLPDAEGQSAWTLCFSPELFLNLASDGTISTEPMKGTAPILGDGQDERRAAELQAD
                     PKNRAENVMIVDLLRNDLGKIAQTGKVCVPEPFKVSRFGSVWQMTSTIQAQALPHTSF
                     ADILRAAFPCGSITGAPKKMSMQIIETLETEARGLYTGSIGYLNPCSGGLGFEGTFNV
                     VIRTLSLKPASASDGIVSGIGGPDSNVQARTAGQGEATPYRFQVHPLYQGVYGVGSGI
                     VIDSDPAAEYRECGWKARFLNELRPDFGIFETMRVENRQCALLDRHLCRLKAAAQALN
                     LPLPDGCENQIKQYIADLPDGAFRVKALLASDGISLSRAVLNHLADKQRVIISPAVLP
                     AQNYLRRFKTTHRTLFDQAWQTAETQGAFDSLFFNSDGILLEGGRSNVFVKHRGQWLT
                     PSLDLDILNGIMRQAVLDEPQKYLQTNQVIETHITQKTLQEAEEIRLSNALRGVFAAA
                     LA"
BASE COUNT          870 a          935 c         1350 g         1001 t
ORIGIN      
        1 tttgcgggaa tgacggcgac agggttgctg ttatagcgga ttaacaaaaa ccagtacggc
       61 gttgcctcgc ctcagctcaa agagaacgat tctctaaggt gctgaagcac cgagtgaatc
      121 ggtttcgtac tatttgtact gtctgcggct tcgtcgcctt gtcctgattt ttgttaatcc
      181 gctataaatg tgaaatccgc cctttgaaaa tcgggcggcg gttttttgcc tgcctgcttt
      241 cagacggcaa agccggtttt cacgggtttc tgcctgtttt tcggatggtt tgacgtgctt
      301 cggcggcgtg tttgccagaa aggtaaatga cagggtatgt tgtatttcag atacggtttt
      361 ttggttgttt ggtgtgcggc aggtgtttct gccgcctatg gggcggatgc gcccgcgatt
      421 ttggatgaca aggcattgtt gcaggtgcaa cggttggtgt cggataagtg ggcggaatcg
      481 gattggaaag ttgaaaatga tgccccgcgc gtggttgacg gggatttttt gttggcgcat
      541 ccgaaaatgt tggaacatag tttgcgcgac gcgctcaacg gcaatcaggc ggatttaatc
      601 gcttcgttgg cggatttgta tgccaagctg ccggattatg acgcggtttt gtacggcagg
      661 gcgcgggctt tgctggcgaa attggcggga aggccggcgg aggcggtggc gcggtatcgg
      721 gaactgcacg gggaaaatgc ggcagacgag cggattttgc tggatttggc ggcggcggag
      781 tttgacgatt tccgactgaa gtcggcagaa aggcattttg cggaggcggc aaaattggat
      841 ttgccggcac cggttttgga aaatgtgggg cgttttcgga aaaaaacgga ggggctgacg
      901 ggctggcgtt tttcgggcgg catcagtccg gcggtcaatc aaaacgccaa taatgccgcg
      961 ccgcagtatt gccggcaaaa cggaggccgg cagatatgca gtgtcagccg ggcggagcgg
     1021 gcggcagggt tgaattatga aatcgaggcg gaaaaactga cggcgttggc agataatcat
     1081 tatttgttgt tccgttccaa tatcggcggc acgagctatt atttcagtaa aaaatcagct
     1141 tatgacgacg ggttcggcag ggcgtatttg ggttggcagt ataaaaatgc acggcagacg
     1201 gcggggattt tgccgtttta tcaggtgcag ttgtcgggca gcgacggctt tgatgcgaaa
     1261 acaaaacggg taaacaaccg ccgcctgccg ccgtatatgc tggcgcacgg agtcggcgtg
     1321 cagctgtccc atacttaccg accaaacccg ggatggcaat tttcggtcgc gctggaacat
     1381 taccgccaac gctaccgcga acaggatagg gcggaataca ataacggcag gcaggacggg
     1441 ttttatgttt cgtcggcaaa acgtttgggc gaatcggcaa ctgtgttcgg cggctggcag
     1501 tttgtgcggt ttgtgccgaa acgcgaaacg gtgggcggcg cggtcaataa tgccgcctac
     1561 cggcgcaacg gtgtttatgc cggttgggcg caggagtggc ggcagttggg cggtttgaac
     1621 agtcgggttt ccgcgtctta tgcccgccgc aactataagg gcgttgcggc tttctcgaca
     1681 gaggcgcaac gcaaccgcga atggaatgtc tcgctggctt tgagccacga caagttgtcg
     1741 tataaaggta tcgtgcccgc gttgaattat cgtttcggca ggacggaaag taatgtgccg
     1801 tatgcgaaac gccgcaacag cgaggtgttt gtgtcggcgg attggcggtt ttgaatggtg
     1861 gaataatgcc gtccgaactt tgtggaaaca ggttcggacg gcatttttgc gcgttcaggc
     1921 aagggcggcg gcaaatacgc cgcgcaaggc gttggagagg cggatttctt cggcttcttg
     1981 cagtgttttt tgtgtgatgt gtgtttcgat tacttgattt gtttgcaaat atttttgcgg
     2041 ttcgtccaac acggcttggc gcattatgcc gtttaaaatg tctaaatcta aagagggcgt
     2101 gagccattgt ccgcgatgtt tgacgaacac gttgcttctg ccgccttcga gcaggatgcc
     2161 gtctgaattg aaaaacaggc tgtcgaacgc gccttgtgtt tcggcggttt gccacgcttg
     2221 gtcgaagaga gtgcggtggg tggttttgaa gcggcgcagg tagttttgtg cgggcaggac
     2281 ggcgggcgaa atgatgacgc gttgtttgtc agccaaatgg tttaaaacgg cgcgggacag
     2341 gctgatgccg tctgaagcga gcagggcttt gacgcggaac gcgccgtcgg gcaagtcggc
     2401 aatgtattgt ttgatttgat tttcgcagcc gtcgggcagg ggcaggttga gggcttgggc
     2461 ggcggctttc agacggcata ggtggcggtc gagtagggcg cattgcctgt tttccacgcg
     2521 catggtttca aaaatgccga agtcggggcg caattcgttg aggaaacggg ctttccagcc
     2581 gcattcgcga tattcggcgg cgggatcgct gtcgatgacg atgccggaac cgacgccgta
     2641 caccccttga tagagtggat gaacttgaaa ccggtacggc gttgcctcgc cttgccctgc
     2701 cgttcgggct tgcacgtttg aatctgggcc gccgatgcct gaaacaatgc cgtctgaagc
     2761 cgaagcaggt ttgagcgaca aggtgcggat aacgacgttg aacgtgcctt caaaccccaa
     2821 gccgccggaa cacgggttca aatagccaat gctgcccgta taaagtccgc gcgcttcggt
     2881 ttcgagcgtt tcgataatct gcatactcat ttttttgggc gcgccggtga tgctgccgca
     2941 ggggaaggcg gcgcggagga tgtcggcgaa cgaggtgtgc ggcaaggctt gggcttggat
     3001 ggtgctggtc atctgccaga cgctgccgaa acgcgatact ttaaacggct cgggtacgca
     3061 tactttgccg gtttgggcga ttttgccgag gtcgttgcgc agcaaatcga caatcatcac
     3121 gttttcggcg cggtttttcg ggtctgcttg caactcggcg gcgcggcgtt cgtcttgtcc
     3181 gtcgcccaaa atcggcgcgg tgcctttcat cggttcggtg ctgatggtgc cgtctgaagc
     3241 gaggttgagg aagagttcgg gcgagaaaca cagcgtccac gcggattgcc cctccgcatc
     3301 gggcaggtgg gacaagacgg cataggggac gggctggcgc aggcggcggt agaggctgat
     3361 gggattgccg taggcttgca ggtgcaggcg ggtggtgtag ttgatttgat aggtgtcgcc
     3421 gcgccggatg gcttcgtgga tttggcggat atggtcgagg taatcggctt cggatacgga
     3481 ggattgcggc gtggaaatgc cggcggggag gccgtctgaa tgtcgggcaa gccagttttc
     3541 ggcatcggtg tcggcgcagt cggcaaacca gtgcagggca agattgccgc cgcgttcgga
     3601 ctcgaccccc gtcagcggca aaccgaatcc gtagtctgca aacaacaccg aatgcagccc
     3661 tttttgccag cccttttgca gcgcgctgtc caaagcatcg agttcttcgg gacggaaaaa
     3721 acggctttcc acatgatttt gatagcgttt tgcgcggccg cttacggcat cgtcaaacag
     3781 ggcgaaataa ggcatggcaa ttcggggcaa atgttttgat tatacgctct ttttacacat
     3841 attttcagac gattcggcaa atatcggcaa aatgtaattt tatgtagaga aagtgggggg
     3901 cgaaggtgta aaattgtgaa aacaaattcc gatttccaac ctgaaataca ataaggagac
     3961 ctttatgaca gaccaccagc tgcaaccgtt tgaaaacgta gaattaggcg aaaagcaaga
     4021 ccagctccaa gtatagtgga ttaacaaaaa ccagtacagc gttgcctcgc tttagctcaa
     4081 agagaacgat tctctcaggt gctgaagcac caagtgaatc ggttccgtac tatctgtact
     4141 gtcttcggct tcgttg
//
LOCUS       DAXHNP010000162         4121 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.162, whole genome shotgun sequence.
ACCESSION   DAXHNP010000162 DAXHNP010000000
VERSION     DAXHNP010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.162"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(248..1111)
                     /gene="rpoH"
                     /locus_tag="ACFM5C_001842"
     CDS             complement(248..1111)
                     /gene="rpoH"
                     /locus_tag="ACFM5C_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HFC6069492.1"
                     /translation="MNNAFALPAIQSGNGSLEQYIHTVNSIPMLSQEEETRLAERRIK
                     GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLF
                     SFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADD
                     LGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYAL
                     QTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKL
                     RGFLTEEAEAV"
     gene            complement(1375..2913)
                     /gene="lnt"
                     /locus_tag="ACFM5C_001843"
     CDS             complement(1375..2913)
                     /gene="lnt"
                     /locus_tag="ACFM5C_001843"
                     /EC_number="2.3.1.269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFC6069493.1"
                     /translation="MVSKLDKYWQHPALYWPLLILFAAATPFTFAPYYHFWLMPLIFG
                     AFVRLIELRPRFAVSSAYLFGLTAYTTQFYWIHTALHDVSGLPDLYAVPLTFLLPAYL
                     ALYPALCFWLWKKFTLPRGIKIGLVLPILWTLTEFARERFLTGFGWGAIGYSQITPDS
                     PLAGFAPLGGIHMVTLATAFLGVWLVLASDNTARSGKRLLPIILIAALLAAGYTARQT
                     DFTRPDGSRSTVALLQGNIDQTLKWREDQVIPTIQKYYEQVGKTTADIVILPETAIPV
                     MRQNLPENILAKFAEQAQNNGSALAVGISQYTSDGNGYENAVINLTGYQENNQDGIPY
                     YAKNHLVPFGEYKPLPFLTTPLYKMMNMPLSDFRKGGGKQSALLMKNQKIAFNICYED
                     GFGDELIAAAKDATLLANASNMAWYGKSNAMYQHLQQSQARAMELGRYMVRATNTGAT
                     AIISPKGNIIAQAQPDTETVLEGHIKGYVGETPYMKTGSSWWLMGILTLAALILFIFR
                     NKEH"
     gene            complement(2982..3707)
                     /locus_tag="ACFM5C_001844"
                     /pseudo
     CDS             complement(2982..3707)
                     /locus_tag="ACFM5C_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
     gene            3903..>4121
                     /locus_tag="ACFM5C_001845"
     CDS             3903..>4121
                     /locus_tag="ACFM5C_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069494.1"
                     /translation="MDWMGSLFLPGGALLFLSVVSTTLSARLGMPLLLVSPANVLDRA
                     AEALAIAAFLMLVARPPAVFGGLWKFNYS"
BASE COUNT          886 a          944 c         1272 g         1019 t
ORIGIN      
        1 atttgtactg tctgcggctt cgccgccttg tcctgatttt tgttaatcca ctatatcaat
       61 tccgccaatc tgtcggaaaa gcagctgatg cggcagtgtc tggtgcatgt ctgctttttg
      121 atttcggcga ttgcgatggc ttggacggat aaaatcgtgt acagcacgat acacaagcct
      181 cattggggtt tctattataa aaaaacaccc gacaaaccgg cttgtcgggt gtttaattat
      241 gtctatttca aaccgcttcg gcttcttcgg tcaggaaacc acgcagtttc tgcatggctt
      301 ttgcttcaat ctggcggatg cgctcggcag agacgccgta ttctgcagca agctggtgca
      361 gcgtcagccc gccgtcgtct tgaagccagc ggctttccac aatacggcgg ctcctgtcat
      421 ccagttgcgc caaagcgttt tgtaaacctt ctgtttgcag ggcgtaatgc gcctgtttcg
      481 atagttgtcg gctcggttcg gaatcgtggt cggcaagcca gtcgatgggg gcgaaactgt
      541 cctcgtcgtc gctgttgtct gccatgatgg cgatgtcgtg tcccgtcatg cgctgttcca
      601 tttccagaac ttcggaaagt ttgacaccca aatcgtcggc gatgtcttgt gcctctttgg
      661 gagacagggc gttgaggttt ttacgcatac tgcgtaaatt gaaaaacagc ttgcgttgcg
      721 gtttggtggt ggcaacgcga accaaacgcc agtttctcaa aataaactcg tggatttcgg
      781 ctttaatcca gtgtacggca aatgaaaaca gacgcgcgcc tcgacctggc tcgtagcgtt
      841 tgaccgcctt catcagtccg atattgcctt cctgaatcag gtctgcctga ttcagcccgt
      901 agccgtcata gccgcgcgcg atggaaacga cgacgcgcag gtgggacagg atgagttgtt
      961 tggcggcgtt gaggtcgccc tttatccggc gttcggcgag gcgggtttct tcttcttggg
     1021 acagcatcgg gatgctgttg acggtgtgga tgtattgttc gaggctgccg ttgccgcttt
     1081 ggatggcggg taatgcgaaa gcgttattca tttggggcat ttcctttcgg ctgaaactgc
     1141 gtatcggcgg tttgctgtgt tgggatgcag tatatcactg cttggcttgt attttgtatg
     1201 tttggcagga gatatgcgct aaggtttgaa agacaggaaa attttgtaag gcaagtttga
     1261 ttgattttgt aaacctgatg gttcaattct atttcagaat tatattacat acgtagttgt
     1321 atgtaaacgg ccggtttgaa aaaagacagc ccgtccggac gggctgtgca ggtatcagtg
     1381 ttctttgttt cggaagatga aaagaatcag tgcggctagg gtcaatatgc ccatcaacca
     1441 ccatgaactg ccggttttca tatagggcgt ttcgccgaca tagcctttga tgtgtccttc
     1501 caatacggtt tccgtatcgg gttgggcttg ggcgatgatg ttgcctttgg gggagatgat
     1561 ggcggttgcg ccggtgttgg tggcacggac catatagcgt ccgagttcca tagcccgcgc
     1621 ctgcgattgt tggaggtgct ggtacatggc gttggatttt ccgtaccacg ccatattgct
     1681 ggcattggca agcagggtgg catctttggc ggcggcaatc agttcgtcgc cgaatccgtc
     1741 ttcgtaacag atgttgaagg cgattttttg gtttttcatc agcagggcgg attgcttacc
     1801 gccgcctttg cggaagtcgg aaaggggcat attcatcatt ttgtaaagcg gcgtggtcag
     1861 gaagggcagc ggtttgtatt cgccgaaggg gacgaggtgg tttttggcgt agtaggggat
     1921 gccgtcctga ttgttttcct gataaccggt caggttgatg acggcgtttt cgtaaccgtt
     1981 gccgtccgaa gtgtattggc tgatgccgac ggcgagcgcg ctgccgttgt tttgcgcctg
     2041 ttcggcaaat tttgccagta tgttttccgg caggttttgg cgcataacgg ggatggcggt
     2101 ttcgggcagg atgacgatgt cggcagtggt tttgccgacc tgttcgtaat atttctgtat
     2161 ggtcgggatg acttggtctt cacgccattt gagggtttgg tcgatgttgc cttgaagcag
     2221 ggcgacggtg ctgcggctgc cgtcggggcg ggtgaagtcg gtttgtcggg cggtgtagcc
     2281 tgcggcaagc agggcggcaa tcaggataat tggaagcagg cgtttgcccg aacgtgcggt
     2341 gttatcactc gccaaaacca gccagacacc gagaaaggcg gttgccagtg taaccatgtg
     2401 gatgccgccc aatggggcaa agccggcgag cgggctgtcc ggggtgattt gggagtagcc
     2461 gattgcgccc cagccgaatc cggtcaggaa acgttcgcgg gcaaactcgg tcagcgtcca
     2521 caggatgggc agtaccaaac cgatttttat gccccgaggc agggtaaatt ttttccacag
     2581 ccagaaacac agtgccggat aaagggcaag gtaggcgggg agtaggaagg tcagcggtac
     2641 ggcatagagg tcgggcaggc cggaaacgtc gtgcagggcg gtgtgtatcc agtagaactg
     2701 tgtcgtgtat gcggtcaggc cgaacaggta ggcggaagag acagcaaaac gcggacgcag
     2761 ttcgatgagg cggacgaagg caccgaaaat caagggcatc agccaaaagt ggtagtaggg
     2821 tgcgaaggta aagggggtgg cggcggcaaa aaggatgagc aaaggccagt agagggcggg
     2881 gtgctgccag tatttgtcca gtttggaaac catattcatc tgtctgttcg gaagataccg
     2941 tctgaacatc tttcaaacgg catcggtatt tgaaaaagaa atcaatgcct gccgaaacga
     3001 ttcatcagcg gcaaggcggg gcgcaggcaa tcgaaccgga aagcagcccg acaacgaggt
     3061 tggcgaagta ctccgcccag ccagcgtccc agtgttgcgc gtgcaggaaa tcgtgcagaa
     3121 ggccgaggtt gtgggcgacc agtacgccgc cgataagaaa catggcaagc gtgccgacca
     3181 cgctcaaacc gcgcataaag caaggcataa aggcagtcag catttgcccc aaactgcgcg
     3241 aaaaggtttg tgggcggcgc atcagcagca tgcctaagtc gtcgagtttg acgatgacgg
     3301 caacgattcc gtacaccaaa acagtcatgc cgatgccgat tgccgccatt acgagcatgc
     3361 gcgtcatgtc ggtgcagaaa cttgtgcagc agcttttcta cgccttcaaa gcacagataa
     3421 atgccgcctg ccgtcaaaag cggcgtaatg agttgcggca ggaaggcgga aagcagcagg
     3481 ggcgcaggca ccaaaaccgg cttgttggaa aaagaacctt tcgccatcga ccaaacaatc
     3541 ggcaactcgc gttctgccga tacgcccgta acccggttgg cattgggtgt caaatcgtcg
     3601 ccgaccatgc cggcggtttt ctttgcggcg gctttggtca tcagggcaac atcgtccaaa
     3661 acggcggtga tgtcgtccgg cagggtaaat agtgaggcaa atgccattaa agaatcctga
     3721 aatgcggcgc aaagtccgac attatatagg agaacgcgga tttgggcggt ttcaggcggc
     3781 atgaaacagg aaaatgccgt ctgaacgctg tggcggacgt gaagtaaagt ttcgtgaaaa
     3841 gaaaataccg tgttacagtc tttcgatttt aatttcatga attttaaggg agaatcgtta
     3901 gcgtggattg gatgggcagt ctgttcctgc cgggtggcgc actgttgttt ctgagcgtgg
     3961 tttcgaccac tttgtccgca cgtttgggaa tgcctttgct gctggtttct cctgccaacg
     4021 tgttggacag ggcggcggaa gccttggcga ttgcggcgtt cctgatgctg gtcgcgcgtc
     4081 cgccggcagt gttcggcggt ttgtggaaat tcaattacag c
//
LOCUS       DAXHNP010000163         4104 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.163, whole genome shotgun sequence.
ACCESSION   DAXHNP010000163 DAXHNP010000000
VERSION     DAXHNP010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4104
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.163"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(198..1049)
                     /locus_tag="ACFM5C_001846"
     CDS             complement(198..1049)
                     /locus_tag="ACFM5C_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HFC6069495.1"
                     /translation="MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNP
                     LLERKDTDEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSD
                     QESACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLKQALTALKKFDPAGVAA
                     ADLNESLILQIERSGECAAKPSALHIVRNALDSIDGNRSQTLARIKKRLPQTDSGTLE
                     AALDLIASLNPFPAAGFASSTPTPYSDEALANLLAFRGMEVSRRTIAKYRESFEIPAA
                     HKRKTAE"
     gene            1397..2911
                     /gene="katA"
                     /locus_tag="ACFM5C_001847"
     CDS             1397..2911
                     /gene="katA"
                     /locus_tag="ACFM5C_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase KatA"
                     /protein_id="HFC6069496.1"
                     /translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
                     LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
                     ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
                     RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
                     HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
                     PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKM
                     LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
                     GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
                     MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL"
     gene            complement(3205..3474)
                     /locus_tag="ACFM5C_001848"
     CDS             complement(3205..3474)
                     /locus_tag="ACFM5C_001848"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069497.1"
                     /translation="MPHENPHPVIPAKTKNQKQKSRHSRAGGNPELSVQKLIGKNGFF
                     RFYVLDSHFRGNDGILVSVRMDSSFPRRRESKVVGAETYWIKRFL"
     gene            3529..4095
                     /locus_tag="ACFM5C_001849"
     CDS             3529..4095
                     /locus_tag="ACFM5C_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HFC6069498.1"
                     /translation="MSLYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAATALVFGS
                     VEALTPLAGWVGGFYAKPFISEWDHWAAFVLLGGLGLKMMREGLSGEAEDVRESKRES
                     LWMTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAIIGMATTVMVAVGLTAGRALGVLF
                     GRCAEFAGGLVLIAIGTWTLLSHLGLIQ"
BASE COUNT          946 a         1089 c         1113 g          956 t
ORIGIN      
        1 cgtcattccc gcgaaagcgg gaatccaggt tcgttgagtt tcggtcattt ccgataaatt
       61 cttgcagctt tgcgtttcta gattccctct ttcgcgggaa tgacgggatg caggtttccg
      121 cgcggacgga ttcggcattc ccgctttcgc agaaatgccg gcttttggtt tgttgtcttt
      181 ataagattat tcggcaatta ttctgcggtt ttgcgtttgt gtgctgccgg aatctcaaag
      241 gattctctgt atttggcaat ggtgcggcga gaaacctcca tgccgcggaa agccagcagg
      301 ttggcgagcg cctcgtcaga atacggcgtg ggcgtggacg aggcaaaacc ggcggcggga
      361 aagggattga gcgaagcaat gaggtcgagt gcggcttcga gtgtgccgct gtcggtttgg
      421 ggcaggcgtt tttttattcg cgcgagggtt tggctgcggt tgccgtcaat gctgtcgagg
      481 gcgtttcgga cgatatgcag ggcggagggt ttggcagcac attcgcccga tctttctatc
      541 tgcagtatca gcgattcgtt caaatcggcg gcggccacgc ctgccgggtc gaattttttc
      601 aatgcggtca gggcttgttt cagcattgct tcatccaaca tccactccaa gggcgtatgg
      661 tcgaggatgt cttcgatgct gtcggtcaga taaccttgct cgtcaaggaa atcgatgagg
      721 atgtggacac aggcggattc ttggtcggaa agcgggtgtt cgcatacttg cgcgtgcagg
      781 tattgcttga aatcctgctc gccggcgatg ttggacagca tatcttcgcc ttcgtctccg
      841 ccgatttgac gggcaggcgc agtgtaatgg ctgaactcgg catcggaaaa ttcatccgtg
      901 tctttgcgtt cgagcagggg gttgtccgac agccagtttt cgacctcgcg ttcaagttcg
      961 atacccgaca tctgcaatac gcgcaaagat tgttgcagcc gctggttgag ctgctgggtc
     1021 tgtttgagct ttattccgag taaggtcatg ataatgtggg gaaaattgtt attttcagcc
     1081 tgtcggcgca aaaaatgccg caaagcgtca ttgcattata aatggtttta atgagcgggt
     1141 tcggattccg ttcgataaca aaaaacaaac gaaaatcaag aaccgattgc ttataataat
     1201 attaaatcga tttcatagtt ttaatagcga aaatcttggc gtatagtcgc atccatagtt
     1261 tttacaaaag ggaaataaaa tgtcgattca agaaatttat tgcaatcaag aaaccggtta
     1321 cgaatacgct ttccgccaaa tcgtactgta agccgtttac ccccatttga ccaacctgag
     1381 aaaaggaaca agagcgatga ctacctccaa atgccctgta acccatctga ccatgaacaa
     1441 cggcgcgcct gttgccgaca atcaaaacag cctgaccgcc ggtcctcgcg gccctctgct
     1501 ggcgcaggat ttgtggctga atgaaaaact cgccgacttc gtgcgcgaag tcatccccga
     1561 acgccgtatg cacgccaaag gttcgggcgc gttcggtacg tttaccgtaa cgcacgacat
     1621 caccaaatac acccgcgcca aaatcttcag cgaagtcggc aaaaaaaccg agatgttcgc
     1681 ccgtttcacc accgtggcag gcgaacgcgg cgcagccgat gcagaacgcg acatccgcgg
     1741 ttttgccttg aaattttata ccgaagaagg caactgggat gtggtcggca acaacacgcc
     1801 cgtgttcttc ctgcgcgacc cgcgtaagtt ccccgacctg aacaaagccg tcaaacgcga
     1861 cccgcgcacc aatatgcgct ctgccacaaa caactgggac ttctggacgc tgctgcccga
     1921 agcactgcac caagttacca tcgtgatgag cgaccgcggc atccccgccg gctaccgcca
     1981 tatgcacggc ttcggttcgc atacctacag cttctggaac gaagcaggcg agcgtttttg
     2041 ggtgaaattc catttccgca cccaacaagg cattaaaaac ctgaccaacg aagaagccgc
     2101 caaaatcatc gccgacgacc gcgaaagcca tcagcgcgac ttatacgaag ccatcgaacg
     2161 cggcgagttt ccgaaatgga cgatgtacat ccaagtcatg cctgaagcag acgcggaaaa
     2221 agtaccttat catccgtttg acttgaccaa agtttggccg aaaaaagact atccgctgat
     2281 tgaagtgggc gaattcgagt tgaaccgcaa tcccgaaaac ttcttcgccg atgtggaaca
     2341 atccgccttc gcaccgagca acctcgttcc cggtatcggc gcgagcccag ataaaatgtt
     2401 gcaggcgcgt ttgttcaatt acgccgacgc gcaacgctac cgcttgggcg tgaacttccg
     2461 ccaaatccct gtcaaccgtc cgcgttgccc tgttcacagc aaccagcgcg acggacaagg
     2521 cagagccgac ggcaactacg gcagcctgcc gcactacgaa cccaacagct tcggacaatg
     2581 gcagcagcag cccgacttcg ctgaaccgcc tttgaaaatc aacggcgacg cggcacactg
     2641 ggactaccgc caagatgatg acgactactt cagccaaccg cgcgccctgt tcaacctgat
     2701 gaacgacgcg cagaaacagg cattgttcgg caacaccgcc gccgcaatgg gcgacgcgcc
     2761 cgacttcatc aaataccgcc atatccgcaa ctgctaccgt tgcgatccgg catacggtga
     2821 aggcgtggca aaagccctcg gattgactgt cgaagacgca caagccgccc gcgcgaccga
     2881 ccccgcactc ggccagcccg gtttgctgta agggggcatt atgtggatgg aaattgaaga
     2941 aatcctgtcc cgcgccgtcc gataccggaa ataaccgggc ataaaaatgc cgtctgaaac
     3001 gtcgtttgac cgtttcagac ggcatttccc catcccgccc ccgccgtttc agtgggcgtt
     3061 ttttattaaa cgcaaaatat cccgtcattc ccgccccaca gcccactttt ccgccgtcat
     3121 tcccgcacca tccccaccgg ttcaaaccgg cacgaaaact tttccgcgtc attcccgcga
     3181 aagcgggaat ctagaacgta aaatctaaag aaaccgtttt atccaataag tttctgcacc
     3241 gacaactttg gattcccgcc tgcgcgggaa tgacgaatcc atccgcacgg aaaccaaaat
     3301 cccgtcattc ccacgaaagt gggaatctag aacgtaaaat ctaaagaaac cgtttttccc
     3361 gataagtttc tgcaccgaca actctggatt cccgcctgcg cgggaatgac gggatttctg
     3421 tttttgattt tttgtttttg caggaatgac gggatgtggg ttttcgtgcg gcatttttcg
     3481 cgctttgctg ttttgctata atctgccctt tttgaggacg ggtgcagtat gagtctttac
     3541 gctttgctct tgattgcgct ggggatgtcg atggatgcgt ttgccgtcgc attggcaaag
     3601 ggtgcggcgg tcaggatgcc tccgcgcaaa attgcagcaa cggccttggt gttcggctcg
     3661 gttgaagcac tcacgccgct ggcaggctgg gtaggcggtt tttatgccaa accgtttatc
     3721 agcgaatggg accattgggc ggctttcgtc ctgctgggcg ggctgggtct gaaaatgatg
     3781 cgcgaagggc tgtccggcga ggcggaagat gtgcgcgaaa gcaaacggga aagcctatgg
     3841 atgacggttt tgactgcttt tggaaccagt attgattcca tgatagtcgg ggtgggcttg
     3901 gcgtttatgg aggtaaacat cgcctttgcc gccgcaatca tcggtatggc gacgacggtg
     3961 atggtggcgg tcgggctgac ggcgggaagg gctttgggcg tattgttcgg caggtgtgcg
     4021 gaatttgccg gaggtttggt gttgattgcc atcggcacat ggacgctctt gtcgcatttg
     4081 ggtttgattc aatgatgtcg gaaa
//
LOCUS       DAXHNP010000164         4068 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.164, whole genome shotgun sequence.
ACCESSION   DAXHNP010000164 DAXHNP010000000
VERSION     DAXHNP010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4068
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.164"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..819
                     /locus_tag="ACFM5C_001850"
     CDS             <1..819
                     /locus_tag="ACFM5C_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
                     /protein_id="HFC6069499.1"
                     /translation="ATANKGKCQDGAIGAAVGEIVGEALVKNTDFSDMTPEQLDLEVK
                     KITAYAKLAAGTVAGVTGGDVNTAAQTAQNAVENNAVKAVVTAAKVVYKVARKGLKNG
                     KINVRDLKQTLKDEGYNLADNLTTLFDETLDWNDAKAVIDIVVGTELNRANKGEAAQK
                     VKEVLEKNRPYIPNKGAVPNMSTYMKNNPFGKQLAQISEKTTLPTQQGQSVFLVKRNQ
                     GLLKTGDRFYLDGQHKNHLEVFDKNGNFKFVLNMDGSLNQMKTGAAKGRKLNLK"
     gene            828..1205
                     /locus_tag="ACFM5C_001851"
     CDS             828..1205
                     /locus_tag="ACFM5C_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069500.1"
                     /translation="METLNDIKKILINVGLYQGFDLTDPKVSEEVNHETANMKWIKDY
                     TSDGNWDNEFKEDLKNFLDYMEVCQLALNDKNFKIASNSLFMAMIYAGNLSLIFDSIK
                     TDISTLLSAEYKKNSFSWPSLDE"
     gene            1483..1857
                     /locus_tag="ACFM5C_001852"
     CDS             1483..1857
                     /locus_tag="ACFM5C_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069501.1"
                     /translation="MKNFNVVKESLRELGIKQGFDLYEKATTEKLNSEDPLDLQWLSN
                     YSSDWNDELEEDFDSFFQHMKEYQYAIDNEDIKSACSSLCEAMLYVGNIKNFFEFLKS
                     DMIRLLRGESKTTDFQWPQFDE"
     gene            1943..3697
                     /locus_tag="ACFM5C_001853"
     CDS             1943..3697
                     /locus_tag="ACFM5C_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6069502.1"
                     /translation="MPSEKLTIFQTAFVMQVNIQIPYILPRCVRAEDTPYACYLKQLQ
                     VTKDVNWNQVQLAYDKWDYKQEGLTGAGAAIIALAVTVVTAGAGAGAALGLNGAAAAA
                     TDAAFASLASQASVSLINNKGNIGNTLKELGRSSTVKNLMVAVATAGVADKIGASALN
                     NVSDKQWINNLTVNLANAGSAALINTAVNGGSLKDNLEANILAALVNTAHGEAASKIK
                     QLDQHYITHKIAHAIAGCAAAAANKGKCQDGAIGAAVGEIVGEALVKNTDFSRMSATE
                     IEKAKAKITAYSKLVAGTASAVVGGDVNTAANAATVAVENNTLYPRCVGAKCDEFQKE
                     QQKWIRENPEEYREVLLLQTGFIPIIGDIQSFVQAQTAADHLFALLGVVPGIGESIQA
                     YKVAKAAKNLQGMKKALDKAATVATAQGYVSKTKIKIGQTELRVTAATDKQLLKAIGE
                     GRDTTGKMTEQLFDSLAKQNGFRVLSGGKYGGNNGFDHVWQAADGSVVLIVESKQIRN
                     GTVQLNPNGAGGYTQMSREWIKQVVKSLPDGSPAKAVVLKANQNGKLKTAIAGVDRQT
                     GKAVILSVKVPSKTNIRR"
     gene            3700..>4068
                     /locus_tag="ACFM5C_001854"
     CDS             3700..>4068
                     /locus_tag="ACFM5C_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HFC6069503.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCPESIDYVDEKKGVP
                     LAAMKYILMYTEAAASHAYLFEHDLKKFKQYAYVAGKLGILQSVDDEDPEPFFFPCDM
                     LNIQDPMFLMLMSDSPQLREF"
BASE COUNT         1317 a          739 c          970 g         1042 t
ORIGIN      
        1 gcgacggcga ataagggtaa gtgtcaggac ggtgcgattg gcgcagccgt gggtgagatt
       61 gttggggaag ctttggttaa aaataccgat tttagcgata tgaccccgga acaattagat
      121 ctggaagtta agaaaattac cgcctatgcc aaacttgcgg caggtacagt tgcaggcgta
      181 acgggaggag atgtcaatac tgctgcacaa accgcacaaa acgcggtaga aaataatgcg
      241 gttaaagctg ttgtaactgc tgcaaaagtg gtttataagg tagccagaaa aggattaaaa
      301 aacgggaaaa tcaacgttag agatttaaaa cagacgttga aagacgaagg ttataattta
      361 gccgacaacc tgaccacctt attcgacgaa acattggatt ggaacgatgc caaagccgtt
      421 attgatattg tcgtcggaac agagctgaat cgcgctaata aaggggaagc ggcacaaaag
      481 gtcaaggaag ttttagaaaa aaatcgtcct tatatcccta ataaaggtgc tgtaccgaat
      541 atgagtacat acatgaaaaa taatcctttt ggaaaacagc tggctcaaat ttcagaaaag
      601 acaacgcttc cgacgcagca agggcagtct gtcttcttgg taaaaagaaa ccaagggtta
      661 ttaaaaaccg gtgataggtt ttatttagat ggccaacata aaaatcattt agaggttttt
      721 gataaaaatg ggaactttaa gtttgttcta aatatggatg gttcgcttaa ccaaatgaaa
      781 actggggcag caaaaggtcg taaattaaac ttaaaatagg aaattttatg gaaacattga
      841 atgatataaa aaaaatcttg attaatgtgg ggctttatca agggtttgat ttgacagatc
      901 caaaagtatc agaagaagtt aatcatgaaa cagctaatat gaaatggatt aaagattata
      961 cttcagacgg gaattgggat aatgaattta aggaggattt aaaaaacttt ttagattata
     1021 tggaagtatg ccaattagcc ctaaacgata aaaatttcaa aattgccagt aattctttat
     1081 ttatggctat gatttacgca ggtaatctat ctcttatatt tgattcaata aaaactgata
     1141 tatcaacatt attgagtgct gagtataaaa agaatagttt ttcatggcca tctcttgatg
     1201 aatagaaagc aagttgtagc ctgcatgaaa tctaaaaccc atgcataagg tgtgggcttc
     1261 agtatacgcg ttccatgatt tacggccata tgccgtctga aaagctcaat tttttcagac
     1321 ggcatttgtt atgaaagtaa atatttagat tccctgtata ctgtttagac tcgtgtgtgc
     1381 tgagtaagct gtagtctgca tgaaacctaa aactcgctca aaattaagct aagacattag
     1441 cagggcaagg gcgaaaattg aatcttaaat aaggtgattc agatgaaaaa ttttaatgta
     1501 gtaaaagaaa gtttaagaga gttaggaatt aaacaaggat ttgatcttta tgagaaagcc
     1561 acaactgaaa aattgaatag tgaagatcct cttgacttac aatggctttc taactattca
     1621 tctgattgga atgatgaatt agaagaagac tttgattctt tttttcagca tatgaaggaa
     1681 tatcaatatg ctattgacaa tgaagacatt aaatctgcat gtagttcact atgtgaagct
     1741 atgctctatg ttggtaatat taaaaatttt tttgagtttc tcaaaagcga tatgattaga
     1801 ctgttgagag gtgaaagtaa aacaacagac tttcaatggc cgcaatttga tgaatagcag
     1861 caagctgtag cctgcatgaa acctaaaatc catgcgtaag gtgtgtgctt cagcacgcac
     1921 gcgttccatg atttacggct caatgccgtc tgaaaagctc acaatttttc agacggcatt
     1981 tgttatgcaa gtaaatattc agattcccta tatactgccc agatgcgtgc gtgctgaaga
     2041 caccccctac gcttgctatt tgaaacagct ccaagtcacc aaagacgtca actggaacca
     2101 ggtacaactg gcgtacgaca aatgggacta taaacaggaa ggcttaaccg gagccggagc
     2161 agcgattatt gcgctggctg ttaccgtggt tactgcgggc gcgggagccg gagccgcact
     2221 gggcttaaac ggcgcggccg cagcggcaac cgatgccgca ttcgcctcgc tggccagcca
     2281 ggcttccgta tcgctcatca acaacaaagg caatatcggt aacaccctga aagagctggg
     2341 cagaagcagc acggtgaaaa atctgatggt tgccgtcgct accgcaggcg tagccgacaa
     2401 aatcggtgct tcggcactga acaatgtcag cgataagcag tggatcaaca acctgaccgt
     2461 caacctggcc aatgcgggca gtgccgcact gattaatacc gctgtcaacg gcggcagcct
     2521 gaaagacaat ctggaagcga atatccttgc ggctttggtg aatactgcgc atggagaagc
     2581 agccagtaaa atcaaacagt tggatcagca ctacattacc cacaagattg cccatgccat
     2641 agcgggctgt gcggcagcgg cggcgaataa gggcaagtgt caagatggcg cgataggcgc
     2701 tgcagtcggt gagattgttg gtgaggcttt ggttaagaat actgatttca gtcgtatgag
     2761 tgcgaccgaa atcgaaaaag ctaaagcgaa gattactgcc tattcaaaac tggttgccgg
     2821 cactgcgtct gccgttgtag gcggggatgt gaatacagcg gcgaatgcgg ctactgtggc
     2881 ggtggagaat aatactttgt atcctagatg cgttggtgca aagtgtgatg aatttcaaaa
     2941 ggaacaacaa aaatggatac gtgaaaatcc tgaagaatat cgagaagttt tgcttcttca
     3001 gacaggattt attccaatta tcggtgatat acagagtttt gtacaagcac agaccgctgc
     3061 cgatcacctg tttgctttgc tgggtgtggt tccgggtatc ggtgaatcga tacaggccta
     3121 taaagtagcg aaagcggcaa aaaatttaca aggcatgaaa aaagccttgg acaaggcagc
     3181 aaccgttgcc actgcacagg gctatgtcag taaaaccaaa atcaaaatcg gtcaaactga
     3241 attaagggtt actgcagcaa ctgacaaaca attgctgaaa gctattggcg aaggaaggga
     3301 cacgacaggt aaaatgaccg agcagttatt tgactcttta gctaaacaaa atggcttcag
     3361 agtgctttcg ggcggcaaat acggcggaaa taacggtttt gatcatgtat ggcaggctgc
     3421 cgatggtagt gttgttttga ttgtagaaag taagcagatt aggaacggta cggtacagct
     3481 gaatccgaat ggtgcgggtg gatatacgca gatgagtcgt gaatggatta aacaagttgt
     3541 aaaaagttta cctgatggta gtcctgctaa ggcagttgtc ttaaaagcaa atcagaacgg
     3601 caaattaaaa acggcaatag caggcgttga tcgtcaaaca ggtaaggccg ttattctttc
     3661 tgtcaaagtt ccttctaaaa ccaatataag gagataacaa tggggcacaa tatgatgacc
     3721 acccaaaaat ggtatgaaca tattactaat gtaatcatag gcaatactgc taatttcaat
     3781 agcggttgcc ccgaatctat agattatgta gatgaaaaaa aaggcgtgcc gcttgcagcg
     3841 atgaaataca ttttaatgta cactgaagct gcggcttccc atgcctatct atttgaacat
     3901 gatcttaaga aattcaagca atatgcttat gttgcaggaa agttgggtat tttgcagagt
     3961 gtagatgatg aagaccccga acccttcttc tttccctgcg acatgctcaa cattcaagat
     4021 ccgatgtttc tgatgctgat gagcgacagc ccgcagctgc gcgagttt
//
LOCUS       DAXHNP010000165         4058 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.165, whole genome shotgun sequence.
ACCESSION   DAXHNP010000165 DAXHNP010000000
VERSION     DAXHNP010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4058
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.165"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1169..1606)
                     /gene="rnhA"
                     /locus_tag="ACFM5C_001855"
     CDS             complement(1169..1606)
                     /gene="rnhA"
                     /locus_tag="ACFM5C_001855"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFC6069504.1"
                     /translation="MDKTVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTN
                     NRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDD
                     LWKELDVLVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS"
     gene            1720..2589
                     /gene="tehB"
                     /locus_tag="ACFM5C_001856"
     CDS             1720..2589
                     /gene="tehB"
                     /locus_tag="ACFM5C_001856"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0046690 - response to tellurium ion
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HFC6069505.1"
                     /translation="MKEWIVGQSGELFCFGQMPVWKAENLPEVLLSGYSSEGGEWVCL
                     NVLQGDVEVRTQDGAAEVWSAESGDCVFAPQQVFSVKPKTDDAEIRLSMYCVAEDYFH
                     KKYGMSATHSAVAAAQDIVPAGRALDMGCGQGRNALFLGLKGFEVTAVDHNPAALANV
                     AELAEAEGLNVRTLEYDLNAAALQGEFDYIVATVVLMFLMPQRVPDVIADMQAHTAAG
                     GYNLIVSAMDTADFPCPMPFPFKFKEGELKDYYRDWELVEYKEELGAMHAKDENGNPI
                     RFKFVTMLAKRPE"
     gene            complement(2639..3445)
                     /gene="thiD"
                     /locus_tag="ACFM5C_001857"
     CDS             complement(2639..3445)
                     /gene="thiD"
                     /locus_tag="ACFM5C_001857"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFC6069506.1"
                     /translation="MKSSFVQTLTIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVT
                     AQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCDFG
                     RRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVHIENRKDAE
                     RAAKILLDYGVKNVVIKGGHLNGSSSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCT
                     FSACITAELAKGSDVCEAVQTAKAYITAAISNPLEIGAGHGPVNHWAYRD"
BASE COUNT          871 a         1011 c         1141 g         1035 t
ORIGIN      
        1 ggtttttgtt aatccactat agtttaattt gtctgtccgc attgccgcta attgtaccac
       61 ttcatcgtat ttccttttcg gttgaaaccc cgccctttag ggcggcagga tcagacttta
      121 tttgggaggg ggtgtaaccc cttccaaatc aggacgacac atagggaggt gctttatgtg
      181 tcgtcctgtg tgttgaaata tatcggacgc gtttgaacag ttgtgcggca aactgtttta
      241 gcggcaggca agagatgccg tctgatgccg tctgaagccc attgtccgtc attcccacac
      301 aggcagttgc tacggttgct gaagcccctt agccgtcgcg caggcggttg ctacggttac
      361 taaaatcccg tcattcccgc gcaggcggga atccagtccg ttcggtttca gttgtttctg
      421 ataaatcttg cagcgttggg tttttagatt cccgctttcg cgggaatgac ggggcggtcg
      481 gatgccgcct gaaactccgt cattcttgca acttttcgtc attcccgtga aagcgggaat
      541 ctagaccttt taaattttca cacggctttt gaatattgcc gttacccgaa ggtctagatt
      601 cccgcttgcg cgggaatgac ggtagagcgg tttcagttgc tcccgataaa tgccgcaatc
      661 tcaaatcccg tcattccctc aaaaacagaa aaacaaaatc agaaacctaa aatcccgtca
      721 ttcccgcagc tcttcgtcat tcccgtgaaa gcgggaatct agacctttta aattttcaca
      781 cggcttttga atattgccgt tacccgaagg tctggattcc cgcctgcacg ggaatgacgg
      841 cagagcggtt tcagttgttt ctaaataaat ttttgcagcg ttggattttt agattcccgc
      901 tttcgcggga atgacggggc ggtcggatgc cgcctgaagc ccgacaaagc ccccaatgcc
      961 gtctgaaacc tcgtcattcc tctgctgtcc gcaacttttc gtcattcccg caaaagcggg
     1021 aatctagagc ctctaaattt tcagacggct tttgaatatt gccgttgccc gacggtttgg
     1081 attcccgcct gcgcgggaat gacggtggag gacgatgccg tctaaagccc attagcggtt
     1141 tcagacggca tttttgccgg agcggcagtc aggaaaactg cgctgcgcca cggtttgcca
     1201 aatcgtcggc gcgttcgttt tccgcgtgtc ccgcgtgtcc tttaacccaa gtccagctga
     1261 cttggtgctg cccaaccaga acgtcgagtt ctttccacaa gtcgtcgttt ttgacgggct
     1321 gtttggcggc ggttttccag ccgttgcgct tccaaccgtg tatccagttt tccatgccgt
     1381 ttttgacgta ttgcgagtcg gtgcagatga tgacggtgca gcggcgtttg agcgatttca
     1441 gtccttcgat gacggcggtc agctccatgc ggttgttggt ggtttgcgct tcgccgccga
     1501 aaagttcttt ttcgcggctg ccgtagcgca tcaacacgcc ccagccgccc gcgccgggat
     1561 tgcctttgca cgcgccgtcg gtgtaaaggt aaacggtttt gtccattatt gtgcctttgt
     1621 gtggtgtccg gcgtgattat aagcggtttg tgcgccgtgc cgtctgaaag attgcggcgg
     1681 attaaaatag gcatataatg tgcaacttta tttttgaata tgaaggagtg gatagtgggt
     1741 caaagcggcg agttgttttg tttcggacag atgcccgtat ggaaggcgga aaacctgccg
     1801 gaagttttgt tgtcgggcta ttcgtccgaa ggaggggaat gggtctgcct gaatgtgttg
     1861 cagggcgatg tcgaagtccg cacgcaggac ggggcggcgg aggtttggtc ggcagaaagc
     1921 ggcgattgcg tgtttgcgcc gcagcaggtg ttttcggtca aaccgaaaac ggacgatgcc
     1981 gaaatccgtt tgtcgatgta ttgtgtggcc gaagattatt tccacaaaaa atacggcatg
     2041 agtgccacgc attctgcagt ggcggcggct caggatatcg tacctgcggg cagggcgctc
     2101 gatatgggct gcgggcaggg gcgcaacgcg ctgtttctcg gtttgaaggg gtttgaagtt
     2161 actgcagtcg atcacaatcc cgccgccttg gcaaacgtgg cggagctggc agaggcggag
     2221 ggtttgaacg tccgcacgct ggaatatgat ttgaacgccg ccgccttgca gggcgagttt
     2281 gattatattg tggcaacagt ggtgctgatg ttcctgatgc cgcagcgcgt acccgacgtg
     2341 attgccgata tgcaggcgca tacggcggcg ggcgggtaca acttgattgt atcggcaatg
     2401 gatacggcgg atttcccctg cccgatgccg ttccccttca aatttaaaga gggagaactg
     2461 aaggattatt atcgggattg ggagctggtc gaatataaag aagaattggg cgcgatgcac
     2521 gccaaagacg aaaacggcaa tccgatacgg tttaaatttg taaccatgct ggcgaaaagg
     2581 cctgaataat cttcaaaaat gccgtctgaa cattttgttt cagacggcat ttttacggtt
     2641 agtcccgata cgcccaatga ttgaccggcc cgtgtcccgc gccgatttcc aaagggtttg
     2701 agattgccgc cgtgatatag gccttggcag tctgtacggc ttcgcaaacg tccgagcctt
     2761 ttgccaattc agcggtaatg caggcggaaa acgtgcagcc tgtgccgtgc gtgtgggcgg
     2821 tcggaaagcg cgggctgtcc aattccagcg tttcgttttg cgtaaacagc caatccgtgc
     2881 agcgtccgct gctgctgccg ttcaaatgtc cgcctttgat aacgacattt ttgacaccgt
     2941 aatcaagcag gatttttgcc gcacgttccg catctttacg gttttcgata tgcacgccgg
     3001 tcagggcttc cgcctcgggc aggttggggg tcaatacatc cgtatcggga agcagcaggc
     3061 gcgtcagtgc cgcaacggcg gaatcctgca acagcggcgc accgcctttg gcaatcatca
     3121 cagggtcgag tacgcgcctg ccgaagtcac agtgtttcag cttgtcggca acgcattcga
     3181 tgatttccgc cgtgccgagc attcctattt tgtaggcgcg gatgtcaaag tcttccctga
     3241 ttgcttggat ttgtgcggtg atggtttcgg tcgggacgag atgaaccgcc gacacgccca
     3301 aggtattttg cgcggtaacg gcggtgatga cgcacgttcc gaacacgccg cgcatctgaa
     3361 acgttttcaa atccgcctga atgcccgcac cgccgcccga atccgaaccg gcgatggtaa
     3421 gcgtttgcac aaaagagctt ttcatttgtt cctccttaat attgtgtccg ataaaaaggg
     3481 ctaatgcctg taaaaaagca cggcgatgcc gtctgaaaac cgcagcgcgg ggtttgtggt
     3541 gcattatatg ccgtattgca ggacaaggca cagggcaggg cggcggggtg catcgtagca
     3601 actgtatttt tgcccgacgg ggtgaaaaat acagttgcta cacccactga taatgaaaaa
     3661 agagagcaat gccgtctgaa ccgcgtgttg cggcgagcat aaaccggcac gctttattcg
     3721 tcattcccac aaaaacagaa acctaaaatt ccgtcattcc tacgaaagcg ggaatccagt
     3781 gtgttcggtt tcagttgttt ttgggtttcg ggtgatttcc aaatcatcat tcccgcgcag
     3841 gcgggaatct agcccttggg gcagcggcaa tatttataaa gccgtctgaa aattcagaag
     3901 ttctagattc ccgttttcac gggaatgacg aagggttgtg ggaatgacga agtttcagac
     3961 ggcatcgccc cgccccgtca ttcccgcata agcgggaatc caaaccattg ggcagagcag
     4021 ccttaaaggt tataaaagac tcgtcattcc cacgaaag
//
LOCUS       DAXHNP010000166         4030 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.166, whole genome shotgun sequence.
ACCESSION   DAXHNP010000166 DAXHNP010000000
VERSION     DAXHNP010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4030
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.166"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            32..694
                     /locus_tag="ACFM5C_001858"
     CDS             32..694
                     /locus_tag="ACFM5C_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HFC6069507.1"
                     /translation="MDSRKFTEASKRRLSELLDAKSEQGNTMRCDEVQGFMTALLSGP
                     DKLTPLDWLPEVLGDESQFTAAERSEIERLVLAMAMETTAAMSDKKLPDLWLYENEDG
                     GSDFYTWCNAYLYGLDIVPTDWFEAVDDEAFEELFYPIMALGGIYDEEENGTIRLQFT
                     EGELAELESELPYSLADIYRYWQAVINKPQTVRREGKKTGRNDPCPCGSGRKYKACCG
                     KN"
     gene            complement(777..1628)
                     /gene="lgt"
                     /locus_tag="ACFM5C_001859"
     CDS             complement(777..1628)
                     /gene="lgt"
                     /locus_tag="ACFM5C_001859"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFC6069508.1"
                     /translation="MIIHPQFDPVLISIGPLAVRWYALSYILGFILFTFLGRRRIAQG
                     LSVFTKESLDDFLTWGILGVILGGRLGYVLFYKFSDYLAHPLDIFKVWEGGMSFHGGF
                     LGVVIAIWLFGRKHGIGFLKLMDTVAPLVPLGLASGRIGNFINGELWGRVTDINAFWA
                     MGFPQARYEDAEAAAHNPLWAEWLQQYGMLPRHPSQLYQFALEGICLFAVVWLFSKKQ
                     RPTGQVASLFLGGYGIFRFIAEFARQPDDYLGLLTLGLSMGQWLSVPMIVLGIVGFVR
                     LSMKKQH"
     gene            complement(1699..2829)
                     /locus_tag="ACFM5C_001860"
     CDS             complement(1699..2829)
                     /locus_tag="ACFM5C_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HFC6069509.1"
                     /translation="MIKISTRFDAGSVVVKDLTDPSNIRLALRPDNASDFAQWFYFRL
                     QGAAYQNCIMHFENAAEAAYPKGWEGYQACASYDRRNWFRVPTSYENGVLTVNHTPLS
                     NSVYYAYFEPYSEEQHLNLLGDAQGSGLCRIDDLGSTVQGRDINLLTIGNQVESDLKI
                     WITARQHPGETMAEWFVEGLLGRLLDPQDPTARTLLDRATFYIVPNMNPDGSALGNLR
                     TNAAGANLNREWENPTLEKSPEVFFVREKMLETGVDLFLDIHGDEGLPFIFVAGTEGV
                     PNYNPRISALETQFKTALLNASPDFQDEYGYEKDAPGQANMTLATNWVGNRFNCLAYT
                     LEMPFKDNANLPDDDFGWNGQRSLRLGEAALSAILNIIGDLR"
     gene            2999..3895
                     /gene="argB"
                     /locus_tag="ACFM5C_001861"
     CDS             2999..3895
                     /gene="argB"
                     /locus_tag="ACFM5C_001861"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFC6069510.1"
                     /translation="MESENIISAADKARILAEALPYIRRFSGSVAVIKYGGNAMTEPA
                     LKEGFARDVVLLKLVGIHPVIVHGGGPQINAMLEKVGKKGEFVQGMRVTDKEAMDIVE
                     MVLGGHVNKEIVSMINTYGGHAVGVSGRDDHFIKAKKLLIDTPEQNGVDIGQVGTVES
                     IDTGLVKGLIERGCIPVVAPVGVGEKGEAFNINADLVAGKLAEELNAEKLLMMTNIAG
                     VMDKTGNLLTKLTPKRIDELIADGTLYGGMLPKIASAVEAAVNGVKATHIIDGRLPNA
                     LLLEIFTDAGIGSMILGGGEDA"
BASE COUNT          986 a          976 c         1177 g          891 t
ORIGIN      
        1 agggcgcaaa acccatttga aaaggaaaat gatggattcc cgaaaattta ccgaagcatc
       61 caaacggcgg ttgagcgaat tgttggatgc caaaagcgaa caaggcaaca cgatgcgttg
      121 cgacgaggtt caaggtttta tgacggcgct gttgagcggg ccggacaaat tgacaccgct
      181 cgactggctg cccgaagtgt tgggcgacga atcgcaattt accgccgccg aacgttccga
      241 aatcgaacgg ctggttttgg caatggcgat ggaaacaacc gccgcgatgt cggataaaaa
      301 actgcccgat ttgtggctgt atgaaaacga agacggcggc agcgattttt acacatggtg
      361 caatgcttat ctttacggtt tggatattgt gccgaccgat tggtttgaag ccgtcgatga
      421 tgaagcgttt gaagagttgt tttatcccat catggcattg ggcggtattt acgacgaaga
      481 ggaaaacggc actatccgtc tgcaattcac agaaggcgag ctggcggaac tggaatccga
      541 gttgccttat tcattggcgg atatctaccg ctactggcag gcagtcatca acaaaccgca
      601 aaccgtccgc agggaaggca aaaaaacagg caggaacgat ccctgtccgt gcggcagcgg
      661 cagaaaatac aaggcgtgtt gcggtaagaa ttgaagcgtt tgtttccatg aaccaaacgt
      721 aaaaatgccg tctgaaaccg gatttccatg tttcagacgg tatttttcac aggcggtcag
      781 tgctgttttt tcatgctgag ccggacaaag ccgacgatac ccaaaacaat catagggacg
      841 ctcaaccatt gccccatcga cagccccaag gtcagcagcc cgagatagtc gtcgggttgg
      901 cgtgcgaatt cggcaatgaa gcggaatatg ccgtagccgc cgaggaagag cgaggcgact
      961 tgtccggtcg gccgctgttt tttagagaac agccaaacga cggcgaacag gcagatgcct
     1021 tcaagtgcaa actgataaag ctgcgaggga tgacgcggca gcataccgta ttgttgcagc
     1081 cattctgccc aaagcggatt gtgcgcggcg gcttcggcat cttcgtaacg cgcctgcggg
     1141 aagcccattg cccaaaatgc gttgatgtcg gtaacgcgtc cccaaagttc gccgttgatg
     1201 aagttgccga tacgtcccga agcgagaccc agcggaacga gcggtgcgac cgtgtccatc
     1261 agtttgagga agccgatgcc gtgtttgcgg ccgaacaacc atatggcaat aactacaccc
     1321 aaaaagccgc cgtggaacga cattccgcct tcccatacct tgaaaatatc aagcggatgg
     1381 gcgaggtagt cggaaaactt gtaaaacagg acgtaaccca aacgcccacc caaaattacg
     1441 cccaaaatgc cccaagtgag gaagtcgtca agcgattctt tggtaaaaac ggacaagcct
     1501 tgcgcgatgc gccttctgcc gagaaaggta aaaagaataa atccgaggat gtagcttagg
     1561 gcataccagc ggacggcaag cgggccgata ctgatgagga cgggatcgaa ttggggatgg
     1621 ataatcataa caggctttcg ttttcaaatg ccgtctgaaa ggcatgatgc ttcagacggc
     1681 atttctgcaa taagggtttc agcgcaaatc gccgatgatg ttgaggatgg cggacaacgc
     1741 ggcttcgccc aagcgcaacg accgttgacc gttccatccg aaatcgtcgt cgggcaggtt
     1801 ggcattgtct ttgaacggca tttccaacgt ataggcaagg cagttgaaac ggttgccgac
     1861 ccagtttgtt gccaaggtca tgtttgcctg accgggcgca tctttttcgt aaccgtattc
     1921 gtcttggaaa tcggggctgg cgttcaaaag ggcggttttg aactgtgttt ccaacgcgga
     1981 aatgcgcgga ttgtagtttg gcacgccttc agttcctgca acaaagataa agggcagccc
     2041 ttcgtcgccg tggatgtcca agaacaaatc cacgccggtt tccagcattt tttcgcgcac
     2101 gaagaacact tcggggcttt tttccaaagt cggattttcc cattcgcggt tgaggttcgc
     2161 accggcggcg ttggtacgaa ggttgcccag tgccgaaccg tcggggttca tattggggac
     2221 gatatagaac gtggcgcggt cgagcagggt gcgcgctgtc gggtcttgcg gatcgagcag
     2281 cctgccgagc agcccctcga caaaccattc cgccatggtt tcgcccggat gctggcgggc
     2341 ggtaatccag attttcagat cgctttcgac ctgattgccg atggtcagca gattgatgtc
     2401 gcgcccttgc acggtgctgc ccaagtcgtc gatgcggcac aggccgctgc cttgcgcgtc
     2461 gccgaggagg tttaaatgct gttcttcgga gtaaggttcg aaataggcgt aatacacgct
     2521 gttggacagc ggcgtatgat tgacggtcag tacaccgttt tcgtaggaag tcggtacgcg
     2581 gaaccagttg cggcggtcgt atgaggcaca cgcctgatag ccttcccagc ctttcgggta
     2641 ggcggcttct gccgcgtttt caaaatgcat gatgcagttt tgatatgccg cgccttgcag
     2701 ccggaagtag aaccattgtg caaaatcgga ggcgttgtcg ggacgcaggg cgaggcggat
     2761 gttggaagga tcggtcaggt ctttgacgac gaccgagccg gcatcgaagc gggtgctgat
     2821 tttaatcatg ggaaagtcct tgctgtcgcc ggtttctcga accggataaa ctgtgatttt
     2881 accgcccgta tcgcaaggct tcaacctgcc cgaaggtctg ccggatgccg tctgaagatt
     2941 gtttcagacg gcgtttggcg ttaacataag ccgaaattgt caacaatagg gagccgttat
     3001 ggagtctgaa aacattattt ccgccgccga caaagcgcgt atccttgccg aagcgctgcc
     3061 ttacatccgc cggttttccg gttcggtcgc cgtcatcaag tacggcggca acgcgatgac
     3121 cgaacctgcc ttgaaagaag ggtttgcccg cgatgtcgta ctgctgaagc tggtcggcat
     3181 tcatcccgtc atcgttcacg gcggcgggcc gcagatcaat gcgatgcttg aaaaagtcgg
     3241 caaaaagggg gagtttgtcc aaggaatgcg cgttaccgac aaagaggcga tggatattgt
     3301 cgaaatggtg ttgggtgggc atgtcaataa agaaatcgtg tcgatgatta acacatatgg
     3361 cggacacgcg gtcggcgtga gcggacgcga cgatcatttc attaaggcga agaaactttt
     3421 gatcgatacg cccgaacaga atggcgtgga catcggacag gtcggtacgg tggaaagcat
     3481 tgatacaggt ttggttaaag ggctgataga acgtggctgc attcccgtcg tcgcccccgt
     3541 cggcgtaggt gaaaaaggcg aagcgttcaa catcaacgcc gatttggtgg caggcaaatt
     3601 ggcggaagaa ttaaacgctg aaaaactctt gatgatgacg aatatcgccg gtgtgatgga
     3661 caaaacgggc aatctgctga ccaaactcac gccgaaacgg attgatgaac tgattgccga
     3721 cggcacgctg tatggcggta tgctgccgaa aatcgcttct gcggtcgaag ccgccgtcaa
     3781 cggtgtgaaa gccacgcata tcatcgacgg caggttgccc aacgcgcttt tgctggaaat
     3841 ctttaccgat gccggtatcg gttcgatgat tttgggcggt ggggaagatg cctgaagcaa
     3901 agtcggaaaa tgccggcttt ggcggaaaac ccgtttgtcc ggtttctgtt tttggggttt
     3961 cgggcaattt ccaaaccgtc attcctgaaa aaatatagtg gattaacaaa aaccagtacg
     4021 gcgttgcctc
//
LOCUS       DAXHNP010000167         4014 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.167, whole genome shotgun sequence.
ACCESSION   DAXHNP010000167 DAXHNP010000000
VERSION     DAXHNP010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.167"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            176..1297
                     /gene="dnaJ"
                     /locus_tag="ACFM5C_001862"
     CDS             176..1297
                     /gene="dnaJ"
                     /locus_tag="ACFM5C_001862"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFC6069511.1"
                     /translation="MSNQDFYATLGVARTATDEEIKKAYRKLAMKYHPDRNPDNKEAE
                     EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
                     MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYESCDVCNGSGAKPGTS
                     PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKAVEVN
                     IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLNLHCELPISFAT
                     AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIIVETPV
                     NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
     gene            1493..3511
                     /locus_tag="ACFM5C_001863"
     CDS             1493..3511
                     /locus_tag="ACFM5C_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFC6069512.1"
                     /translation="MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
                     FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
                     PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
                     GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
                     VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDIEMAAFAMKLWKEKVRFIGAGTIGI
                     AAVWTLLMLLKPMVEGMKMSFKSFGGGAPATERAEQDLSPKAMIFWVLSMMFILGVSF
                     YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSI
                     VVISLVLLLVGESGGLMADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
                     ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
                     TIASGIFAHNLEWVYIFTGIAIGAVLIAADLVLKKSSGGKLALPVLAVGMGIYLPPSV
                     NMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFII
                     AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMFFFAQRVLKAGR"
     gene            complement(3555..>4014)
                     /gene="rfbC"
                     /locus_tag="ACFM5C_001864"
     CDS             complement(3555..>4014)
                     /gene="rfbC"
                     /locus_tag="ACFM5C_001864"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6069513.1"
                     /translation="WFKENIADCSFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVG
                     EVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDTTELTYKCTDY
                     YKPEAEQVLIWNDPAIGIGWPLQTAPLLSPKDLAGKTWAQAEKLRLTLSR"
BASE COUNT          867 a          932 c         1172 g         1043 t
ORIGIN      
        1 gttaatccac tatatttttc aatttccgga cgggtaaagc cgccgatacc cggcgcattg
       61 ttaaaggaac aacagaagaa atgccgtctg aaaggcggtt tttgttcggg aaaccttgtg
      121 ttttgtcctg ttgcccttat tttatcgacg attttatttt gaatcagatg aaaagatgag
      181 caatcaagat ttttatgcca ccctaggtgt ggcaagaaca gctaccgatg aagaaattaa
      241 aaaagcctac cgtaaattgg cgatgaaata ccatcccgac cgcaatcctg acaataaaga
      301 ggcggaagag aagtttaaag aagtacaaaa ggcgtatgaa actttgtccg ataaagaaaa
      361 gcgcgctatg tacgaccagt atggccatgc ggcgtttgaa ggcggcggac aggggggctt
      421 cggagggttt ggaggattcg gcggtgctca aggttttgac tttggggata ttttcagcca
      481 aatgtttgga ggcggttcgg ggcgcgccca gcctgattat cagggcgagg acgttcaagt
      541 cggtatcgaa atcacgcttg aagaagcagc aaaaggcgtg aagaaacgca tcaacattcc
      601 gacttatgaa tcgtgcgatg tctgcaacgg cagcggtgcg aaaccgggga catccccgga
      661 aacctgcccg acttgcaaag gttcgggaac ggtgcatatc cagcaggcga ttttccgtat
      721 gcagcagact tgtccgacct gccacggtgc cggcaaacac attaaagaac cttgcgtcaa
      781 atgccgtggc gcggggcgga ataaggccgt caaggcggtg gaagtcaata ttcccgccgg
      841 tatcgatgac gggcagcgta tccgtttgag cggcgaaggc gggccgggta tgcacggcgc
      901 gcccgcaggc gatttgtatg taaccgtccg catccgggcg cataagattt tccaacgcga
      961 cggcttgaat ttgcattgcg aactgccgat cagttttgcc acggcggctc tgggcggaga
     1021 gttggaagtg ccgaccttgg acggcaaagt caagctcacc gtccccaaag aaacccaaac
     1081 cggcaggagg atgcgcgtga agggtaaggg agtcaaatct ttacgcagca gcgcgaccgg
     1141 cgatttgtac tgccatatta tcgtcgaaac acctgttaat ttgaccgacc gtcaaaaaga
     1201 gcttttagaa gaatttgaac ggatttctac cgggttggaa aatcaaacac cgcgtaagaa
     1261 atcgttttta gacaagctgc gcgatttgtt tgattgattt tgaggcttgt aaacaggcgg
     1321 ccgtatcggg gaatctccct gatacgactg tttttgtttg cttgaaaata gtttttattt
     1381 tcaagggagt acgagatagg attggataac tgtttttaac tgttcttttt aaaacttgac
     1441 attatgacat attgccaaca atatgcggga atctgttgtc aaaggaagaa taatgaataa
     1501 atctttatcc ggttcggtag aagaataccg cgaactgacg ctccgaggca tgatactcgg
     1561 tgcattgatc actgtaattt ttactgcgtc caacgtttac ctcggtttga aagtcgggct
     1621 gacctttgcc tcgtcgattc cggcggcggt gatttcgatg gcggttttaa agtttttcaa
     1681 aggcagcaat attttggaaa acaacatggt gcagacccaa gcctcggctg cgggtacgct
     1741 ttcaaccatc atcttcgtcc tgcccggttt gctgatggcg ggctactgga gcggtttccc
     1801 gttctggcag acgacgcttt tatgtattgc cggcgggatt ttgggggtga ttttcaccat
     1861 tccgctgcgt tacgcgatgg tggtgaaaag cgatttgcct tatccggaag gtgtggcggc
     1921 tgctgaaatt ttgaaagtgg gcggtcatga agaaggggat aaccgtcagg gcggcagcgg
     1981 catcaaagag ctggcggccg gcggtgcgtt ggcgggattg atgagctttt gcgccggagg
     2041 tctgcgtgtg attgccgata gcgcgagtta ttggtttaaa agcggtacgg caattttcca
     2101 actgccgatg ggcttttcac tggcattgtt gggcgcgggc tatttggtcg gactgacggg
     2161 cggtatcgcc attctgttgg gcatttcgat tgcttggggc attgccgtgc cgtatttttc
     2221 atcgcacatc ccgcagcctt ccgatataga aatggcggcg tttgcgatga agctgtggaa
     2281 ggaaaaagta cgcttcatcg gcgcgggaac cataggtatc gcggcggttt ggacgctttt
     2341 gatgctgctc aagccaatgg tggaaggcat gaagatgtcg ttcaagagtt ttggcggcgg
     2401 tgcgcccgct acagaacgcg ctgaacagga tttgtcgcct aaagccatga ttttctgggt
     2461 attgtctatg atgtttattc taggcgtgtc gttttaccac tttatcggcg attcgcacat
     2521 tacgggcggc atggcttggc ttttggtggt cgtttgcacg cttttggctt ccgtcatcgg
     2581 ctttttggtc gccgccgcct gcggttatat ggcgggtttg gtcggctcgt cttccagccc
     2641 gatttccggc gtgggcatcg tttccatcgt cgtgatttcg ctggttttgc tgctggtggg
     2701 cgaatccggc ggtttgatgg cggatgaggc aaaccgcaaa tttttgctgg cactgacttt
     2761 attttgcggc tcggcagtaa tctgcgtggc ttcgatctcc aatgacaacc tgcaagacct
     2821 gaaaaccggc tacctgctca aagccacgcc ttggcggcag caagtcgccc tgattatcgg
     2881 ctgtatcgtc ggtgcgctgg ttatttcacc cgtgttggaa ctgctttacg aagcctacgg
     2941 ctttaccggc gcaatgccgc gcgaaggtat ggacgcggcg caggctttgg cagcccctca
     3001 agcgactttg atgacgacca tcgcgtcggg cattttcgcc cacaacctcg aatgggtcta
     3061 tatctttacc ggcatcgcga ttggcgcggt gttgattgcc gccgatttgg tgttgaaaaa
     3121 atcatcaggc ggcaaacttg ccctgcccgt ccttgcggtc ggtatgggta tttatctgcc
     3181 gccgtccgtc aatatgccca tcgtggcagg cgcggtgttg gcggcggtgt tgaaacacat
     3241 catcggtaaa aaagcggaaa accgtgaagg ccgtctgaaa aacgccgagc gcatcggaac
     3301 cttgttctcc gccggcctga ttgtcggtga aagcctgatc ggtgtgatta tggcgtttat
     3361 tattgccttc tccgtgacca acggcggctc ggatgcgccg ctcgcgttga atctgcaaaa
     3421 ctgggatgcc gccgcttctt ggttgggttt ggcgttcttc gttaccggga tgtttttctt
     3481 tgcacagcgc gtactgaagg cgggtaggta gcctgtcgga gaaaatgccg tctgaaacgt
     3541 tcagacggca ttttttatcg ggaaagtgta aggcggagct tttcggcttg cgcccacgtt
     3601 ttgccggcaa ggtctttggg cgacagcagc ggcgcggttt gaagcggcca gcctatgccg
     3661 attgccgggt cgttccatat taaaacctgt tcggcttcag gcttgtaata gtccgtgcat
     3721 ttgtaggtaa gttcggtcgt gtcgctcaaa acgtaaaacc cgtgcgcgaa gccttcgggt
     3781 atccaaagct ggcattggtt ttgcgcggac agggttgcgc ccgcccattt gccgaaagtc
     3841 ggcgaacctt cgcgcatatc gacggccacg tcgaacactt cgccgacaac tacgcgtacg
     3901 agtttgcctt gtgtgttttc ggtttggtag tgcaggccgc gcaatacgcc tttgccggat
     3961 ttggagtggt tttcctgaac aaaggaacag tcggcaatat tttctttgaa ccac
//
LOCUS       DAXHNP010000168         4008 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.168, whole genome shotgun sequence.
ACCESSION   DAXHNP010000168 DAXHNP010000000
VERSION     DAXHNP010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4008
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.168"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..632)
                     /locus_tag="ACFM5C_001865"
     CDS             complement(<1..632)
                     /locus_tag="ACFM5C_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6069514.1"
                     /translation="MGRHFGRRRFLTVAAVAAAGAAVSFLPNPFAADDEKRNKDEKHN
                     ENVFFWKGVALGSGAELRLFGVDDRQAADLVNKVLAEVARLEKMFSLYREDSLISRLN
                     RDGYLTSPSADFLELLSLCRDIHALTEGAFDPTVQVLWKLYADYFSAHPDAETPPPEN
                     SVKEALKRVGFGKVSFDDREIRFTEKGMGLSLNGIAQGYSGLTKTSTALPR"
     gene            complement(641..1435)
                     /locus_tag="ACFM5C_001866"
     CDS             complement(641..1435)
                     /locus_tag="ACFM5C_001866"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HFC6069515.1"
                     /translation="MKAYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPL
                     LTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDEWADENGDLGPVYGYQWRNWP
                     APDGRHIDQIANVVEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAAL
                     QLEREPRALPVMKINPEVKDLFAFKFEDFELEGYDPHPHIKAAVSV"
     gene            1858..3192
                     /gene="gdhA"
                     /locus_tag="ACFM5C_001867"
     CDS             1858..3192
                     /gene="gdhA"
                     /locus_tag="ACFM5C_001867"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HFC6069516.1"
                     /translation="MTDLNTLFANLKQRNPNQEPFHQAVEEVFMSLDPFLAKNPKYTQ
                     QSLLERIVEPERVVMFRVTWQDDKGQVQVNRGYRVQMSSAIGPYKGGLRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELYRHIGADTD
                     VPAGDIGVGGREIGYLFGQYKKIRNEFSSVLTGKGLEWGGSLIRPEATGYGCVYFAQA
                     MLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFPDSGMTEAQ
                     LAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCATQNELDEEAAKTLL
                     ANGCYVVAEGANMPSTLGAVEQFIKAGILYAPGKASNAGGVATSGLEMSQNAIRLSWT
                     REEVDQRLFGIMQSIHESCLKYGKVGDTVNYVNGANIAGFVKVADAMLAQGF"
     gene            3334..3708
                     /locus_tag="ACFM5C_001868"
     CDS             3334..3708
                     /locus_tag="ACFM5C_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069517.1"
                     /translation="MIMDQYYMELKNKLSNRPILLDNTNDFLFVLVNTVKAMIENTDK
                     SQLSELDKILDGVTSQELKLAYDFCQGKFGQAGFSYRRHPNYFYLSSLIATFPEFELS
                     KADRDYLKGIINFDNYLLYELD"
     gene            3752..>4008
                     /locus_tag="ACFM5C_001869"
     CDS             3752..>4008
                     /locus_tag="ACFM5C_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone acetyltransferase"
                     /protein_id="HFC6069518.1"
                     /translation="MIELKLVDESSFQAVLDLKISEADERARFVAPNVRSLADAWLYR
                     ENEDVFPRAIYWDKQVVGFLLLEIDKDEAEYFIWRIMIGQQ"
BASE COUNT         1090 a         1046 c          938 g          934 t
ORIGIN      
        1 cgaggcaacg ccgtactggt ttttgttaat ccactatagc cttgcgcgat gccgttcaag
       61 gacaaaccca tacccttttc ggtaaaacgg atttcacggt cgtcaaacga gactttgccg
      121 aagccgaccc gcttcagggc ttccttcacg ctattctccg gcggcggcgt ttccgcatcg
      181 ggatgggcgg aaaaataatc ggcatacagt ttccacaaaa cctgaaccgt cggatcgaac
      241 gcgccttccg tcagcgcgtg aatatcgcgg cacaggctca acagttccaa aaaatccgcc
      301 gacggcgaag tcagataacc gtcacggttc aggcggctga tcaggctgtc ttcacggtaa
      361 aggctgaaca ttttttccaa acgcgccact tccgccaaaa ccttattgac caaatccgcc
      421 gcctgtctgt cgtccacgcc gaacagacgc agctccgcac cggaacccag cgcgacacct
      481 ttccagaaaa acacattttc attgtgtttt tcatctttat tgcgtttttc atcatcggcg
      541 gcaaaaggat tcggcaaaaa agaaaccgcc gcgcccgccg ccgcaacggc ggcaactgtc
      601 aaaaaacgcc tgcgcccgaa atgcctgccc ataccgcctc ctaaaccgac actgccgcct
      661 tgatgtgcgg atgcggatcg tagccttcca actcaaaatc ttcaaatttg aaggcaaaca
      721 aatctttgac ttcaggattg attttcatca caggcaaggc gcgcggttcg cgttccaact
      781 gcaatgcggc ctgctcgaaa tggttgcggt acaggtgcgc gtcgccaaac gtatggacaa
      841 actcgcccgc ctccaatccg cacacttgcg ccatcatcat ggtcaacagc gcgtagctgg
      901 caatattaaa cggcacacca aggaaaatat ccgcgctgcg ctggtaaagc tggcaggaca
      961 gtttgccgtc ggcaacgtaa aactgaaaca gcgcgtggca gggcggcaat gccatttcat
     1021 cgaccaaagc cggattccac gccgatacaa tcaggcggcg cgagtcgggg tttttcttaa
     1081 tttgttccac cacattggcg atttggtcga tatgcctgcc gtcgggcgcg ggccagttac
     1141 gccactggta gccgtaaacc gggcctaagt cgccgttttc gtccgcccac tcgtcccaaa
     1201 tggaaacatt gttgtccttt aggtatttga tattggtatc gcctttgaga aaccaaagca
     1261 gctcgtggat aatcgagcgc aaatgcagct ttttggtcgt cagcagcgga aaacctttgc
     1321 ccaagtcaaa acgcatctga taaccgaata cggagcgcgt gcccgtaccg gtgcggtctg
     1381 atttgtccgt accgttgtcg aggacgtggc gcatcaagtc caaataggcc ttcatcatca
     1441 tctttcatca aattaaacgg cgcatattgt aacatttccg gccaacgccc gagtccggac
     1501 aaacgcacac gccgccccgc cggacgataa aaacgcagat acaggcaggc aggattgttg
     1561 gcaatttcag tccttttcca cagtaaaacc cagtgggaaa acaaaattac cttgattgga
     1621 atcaaaaaat ctagtttaat tacttagaat aaaatttcaa taatattttt atttacgaaa
     1681 ttaatttatg attattgatt aattatcggc aacaaacatc aaacatcgaa aacatggaaa
     1741 aaataatgtc aacaattttt gccaaatcgg gcttggcatc agaaaaaaat aggtttatat
     1801 tcccacctac aaatttgttt tcccattagt acactatcaa ccaaaaggag tatccgaatg
     1861 actgacctga acaccctgtt tgccaacctc aaacaacgca atcccaatca ggagccgttc
     1921 catcaggcgg ttgaagaagt cttcatgagt ctcgatccgt ttttggcaaa aaatccgaaa
     1981 tacacccagc aaagcctgct ggaacgcatc gtcgaacccg aacgcgtcgt catgttccgc
     2041 gtaacctggc aggacgataa agggcaagtc caagtcaacc ggggctaccg cgtgcaaatg
     2101 agttccgcca tcggtcctta caaaggcggc ttgcgcttcc atccgaccgt cgatttgggc
     2161 gtattgaaat tcctcgcttt tgaacaagtg ttcaaaaacg ccttgaccac cctgcctatg
     2221 ggcggcggca aaggcggttc cgacttcgac cccaaaggca aatccgatgc cgaagtaatg
     2281 cgcttctgcc aagcctttat gaccgaactc taccgccaca tcggcgcgga caccgatgtt
     2341 ccggccggcg acatcggtgt aggcgggcgc gaaatcggct acctgttcgg acaatacaaa
     2401 aaaatccgca acgagttttc ttccgtcctg accggcaaag gtttggaatg gggcggcagc
     2461 ctcatccgtc ccgaagcgac cggctacggc tgcgtctatt tcgcccaagc gatgctgcaa
     2521 acccgcaacg atagttttga aggcaaacgc gtcctgattt ccggttccgg caacgtggcg
     2581 caatacgccg ccgaaaaagc catccaactg ggcgcgaaag tgctgaccgt ttccgactcc
     2641 aacggcttcg tcctcttccc cgacagcggt atgaccgaag cgcaactcgc cgccttgatc
     2701 gaattgaaag aagtccgccg cgaacgcgtt gccacctacg ccaaagagca aggtctgcaa
     2761 tactttgaaa accaaaaacc gtggggcgtc gccgccgaaa tcgccctgcc ctgcgcgacc
     2821 cagaacgaat tggacgaaga agccgccaaa accctgttgg caaacggctg ctacgtcgtt
     2881 gccgaaggtg cgaatatgcc gtcgactttg ggcgcggtcg agcaatttat caaagccggc
     2941 atcctctacg ccccgggaaa agcctccaat gccggcggcg tagcaacttc aggtttggaa
     3001 atgagccaaa acgccatccg cctgtcttgg actcgtgaag aagtcgacca acgcctgttc
     3061 ggcatcatgc aaagcatcca cgaatcctgt ctgaaatacg gcaaagtcgg cgacacagta
     3121 aactacgtca atggtgcgaa cattgccggt ttcgtcaaag ttgccgatgc catgctggcg
     3181 caaggcttct aagcaaacgc cgccgctccg caaacaaaat gccgtccgaa ccgcaaatgc
     3241 tgttcagacg gcatttcatt atccgcccgt tcgaatcggg tgatactatt tgtatccaga
     3301 attgttggat agtttgggag tggagaggaa gaaatgatta tggaccaata ctatatggag
     3361 ttaaagaata agttatctaa cagaccaatc ctactggata atactaatga ttttcttttt
     3421 gttttagtaa atacagtgaa agctatgata gaaaatactg ataaaagtca gctttcagag
     3481 ttagataaaa ttttagacgg tgtcacaagt caagaattga aacttgccta tgatttttgt
     3541 caagggaaat tcggtcaagc aggtttttct tatcgtaggc acccgaatta tttttatttg
     3601 tccagtttaa ttgcgacttt tccagaattt gagttgtcta aagcagaccg agattacctc
     3661 aaaggaatca taaattttga taactacctt ttatatgagt tagattagtc tttaatcacc
     3721 tcaaaaccct atttattcaa aaggagaaaa aatgattgag ctgaaattag tagatgagag
     3781 cagttttcag gcagtgctgg atttgaaaat atctgaagct gatgaacgag cacgttttgt
     3841 ggctccaaat gtacgctctt tagctgacgc atggctctac cgggaaaatg aagatgtgtt
     3901 tccgagggca atctattggg ataagcaagt ggttggcttt ctcctgctgg aaatagacaa
     3961 ggatgaagca gaatacttta tctggcggat aatgattggt cagcagtg
//
LOCUS       DAXHNP010000169         3938 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.169, whole genome shotgun sequence.
ACCESSION   DAXHNP010000169 DAXHNP010000000
VERSION     DAXHNP010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.169"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            108..1223
                     /gene="lst"
                     /locus_tag="ACFM5C_001870"
     CDS             108..1223
                     /gene="lst"
                     /locus_tag="ACFM5C_001870"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HFC6069519.1"
                     /translation="MGLKKACLTVLCLIVFCFGIFYTFDRVNQGERNAVSLLKDKLFN
                     EEGEPVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAER
                     AYFFHLPYGLNKSFNFIPTMAELKVKSMLLPKVKRIYLASLEKVSIAAFLSTYPDAEI
                     KTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGL
                     KNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQY
                     VAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNV
                     HVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKD"
     gene            complement(1387..1845)
                     /locus_tag="ACFM5C_001871"
     CDS             complement(1387..1845)
                     /locus_tag="ACFM5C_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6069520.1"
                     /translation="MNIQTRLAATALALFLSACGNGGAPAQPKGEISENRTAAFKSMM
                     PEFTRMGKMVKDEEPYDVEKFKQAAAAFAESSKKPFTLFESDPQGNGRALPAVWSDGA
                     KFEAEKTKFAAAVEKLNAAAQTGKLDEIKAAYGETGASCKSCHDSFRAPE"
     gene            2115..2936
                     /locus_tag="ACFM5C_001872"
     CDS             2115..2936
                     /locus_tag="ACFM5C_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6069521.1"
                     /translation="MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADEL
                     GALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETM
                     IQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
                     LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDERAAGVYEGVEFIRPEDIAETALW
                     LYQRPAHMNVNTIEIMPVAQTFAGMKVIKKAVPEVREDFEKQSMSLFSRIRSWFK"
     gene            complement(2987..3433)
                     /gene="yciA"
                     /locus_tag="ACFM5C_001873"
     CDS             complement(2987..3433)
                     /gene="yciA"
                     /locus_tag="ACFM5C_001873"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HFC6069522.1"
                     /translation="MQHEEGNRQRPQGELLLRTVAMPRDTNPNQDIFGGWIMSQMDLG
                     GGILAAEIARGRIVTVAVQEMNFIRPVKVGNVVCCYGHCVRVGNTSLQLKVDVWVKTL
                     MNDCVTEDRYLVTEAVFTYVAIDAEGNPRPIPKEGNPKLAGLLPTP"
BASE COUNT          919 a          847 c         1151 g         1021 t
ORIGIN      
        1 cactataata ttcggtaact gtcggaatat ctgctaaaat tccgcatttt tccgtcccgg
       61 gacactcggg gcgtatgttc aatttgtcgg aatggagttt tagggatatg ggcttgaaaa
      121 aggcttgttt gaccgtgttg tgcctgattg ttttttgttt cgggatattt tatacatttg
      181 accgggtaaa tcagggggaa aggaatgcgg tttccctgct gaaggacaaa ctcttcaatg
      241 aagaggggga accggtcaat ctgattttct gctataccat attgcagatg aaggtggcag
      301 aaaggattat ggcgcagcat ccgggggagc ggttttatgt ggtgctgatg tctgaaaaca
      361 ggaatgaaaa atacgattat tatttcaatc agataaagga taaggcggag cgggcgtatt
      421 ttttccacct gccctacggt ttgaacaaat cgtttaattt cattccgacg atggcggagc
      481 tgaaggtaaa gtcgatgctg ctgccgaaag tcaagcggat ttatttggca agtttggaaa
      541 aagtcagcat tgccgccttt ttgagcactt acccggatgc ggaaatcaaa acctttgacg
      601 acgggacaat caatttaatt caaagcagca gctatttggg cgatgagttt tctgtaaacg
      661 ggacgatcaa gcggaatttt gcccggatga tgatcggaga ttggagcatc gccaaaaccc
      721 gcaatgcttc cgacgagcat tacacgatat tcaagggttt gaaaaacatt atggacgacg
      781 gccgccgcaa gatgacttac ctgccgctgt tcgatgcgtc cgaactgaag gcgggggacg
      841 aaacgggcgg cacggtgcgg atacttttgg gttcgcccga caaggagatg aaggaaattt
      901 cggaaaaggc ggcaaaaaac ttcaacatac aatatgtcgc accgcacccc cgccaaacct
      961 acgggctttc cggcgtaacc acattaaatt cgccctatgt catcgaagac tatattttgc
     1021 gcgagattaa gaaaaacccg catacgaggt atgaaattta tacctttttc agcggcgcgg
     1081 cgttgacgat gaaggatttt cccaatgtgc acgtttacgc attgaaaccg gcttcccttc
     1141 cggaagatta ttggctcaag ccggtgtatg ccctgtttac ccaatccggc atcccgattt
     1201 tgacatttga cgataaagat taatcgcata gcaaataaaa atagaaaatg gcggagtaag
     1261 taaggcaaaa atcaggatat ggcgtatttt ttgaattaac gataattttt gattgctttg
     1321 cgcttggtga aatggcaaag aaaatgccgt ctgaaggctt cagacggcat tgttttgttt
     1381 tggatgttat tcgggcgcgc ggaaactgtc gtggcaggat ttgcagcttg cgccggtttc
     1441 gccgtaggcg gctttgattt catccagttt gccggtttgt gctgcggcgt tgagtttttc
     1501 gacggcggcg gcgaattttg ttttttcggc ttcaaatttt gcaccatccg accaaacggc
     1561 gggcagggcg cggccgttgc cttgcggatc ggactcaaaa agtgtgaacg gtttcttgct
     1621 gctttcggca aacgccgcgg cagcctgttt gaatttttcg acatcgtaag gttcttcgtc
     1681 tttgaccatt ttgcccatgc gtgtgaattc gggcatcatg gatttgaacg cggcggtgcg
     1741 gttttcggaa atttcgcctt tgggctgtgc gggcgcgccg ccgtttccgc aggcggaaag
     1801 gaatagggcg agggcggttg cggcaaggcg ggtttgaata ttcatcgtgt ttccttttcg
     1861 gttgaaaccc cgcccacttg gacatccgtc cttcggggcg gtagaatcag attttatttg
     1921 ggaagggtgc aatcccttcc gaatcaggac ggcacatagg gcgacgcttt atgtgccgtc
     1981 ctgtgtgttg aaacatattg aatgtgtcct gtcgtggtgg tatggttgtt gtcattttca
     2041 gccggcgcga tgccgtctga agagcgttat gatacctgaa acaggtttgg gaaacgagaa
     2101 agaaaggaaa aacaatggct gttttaatta ccggtgcttc ggcaggattc ggcgaagcga
     2161 tgtgccgcgc gtttgtcggg gcgggatacc gcgttatcgg tgcggcgcgc cgtgcggaca
     2221 ggcttcaggc cttggcggat gaattgggtg ctttgtttta ccctttggaa atggacgtgt
     2281 cgcgacgcga gtcggtggaa aacgccttaa acggcatccc cgatgaattt tccgacatcg
     2341 actgcctcat caacaatgcc gggctggctt tgggtctgga cacggcggac aaggcggatt
     2401 ttgaagattg ggaaacgatg attcaaacca atgttttggg tttgacgttc ctgacgcgca
     2461 aaattttgcc gcaaatggtg gaacgcggcg gcggctatgt gatgaatttg ggttcgattg
     2521 caggcaatta tgcttatgcc ggcagcaacg tttacggggc gaccaaggcg tttgtgcggc
     2581 agttcagcct gaatttgcgc gcggagttgg cggataagaa catccgcgtt accaatatcg
     2641 agccgggttt gtgcggcaat acggagtttt ccaatgtgcg cttcaaaggc gatgacgaga
     2701 gggcggcggg cgtgtatgag ggtgtggaat ttatccgccc cgaagatatt gcggaaaccg
     2761 cattgtggct gtaccagcgg ccggcgcata tgaatgtgaa cacgattgaa attatgcccg
     2821 tggcgcagac ttttgcagga atgaaagtga taaaaaaagc cgtgcccgaa gtgcgggaag
     2881 actttgaaaa acagagtatg tcgctgtttt cccgcatcag gtcctggttc aaatgatgca
     2941 aaatgccgtc tgaagacagt ttcagacggc atttttacgg gtatttttac ggagtaggca
     3001 ataagcccgc caatttgggg ttgccttctt tcggaatcgg gcgcggattg ccttccgcat
     3061 cgatggcaac ataagtgaac acggcttcgg ttacgaggta gcggtcttcg gtaacgcaat
     3121 cgttcatcaa agttttcacc cagacgtcga ctttaagctg gagggaagtg ttgcccacgc
     3181 ggacgcaatg cccgtagcag cagacgacgt tgccgacctt gaccgggcgg atgaagttca
     3241 tttcctgaac ggcgacggta acgatgcgtc cccgcgcgat ttccgccgcc aatatgccgc
     3301 cgcccaaatc catctgcgac ataatccagc cgccgaaaat gtcttggttg ggattggtat
     3361 cgcgcggcat agcgacggta cgcaggagca gttcgccttg agggcgttgg cggttgcctt
     3421 cttcgtgctg cataaagttt ccttgtttta ttgaaatata aatcgaacct gcacccctgc
     3481 ccgaaacggg aagtcgggaa gtgtgtagtt taacccattt gagacataca agggcgggcg
     3541 cggaacagat tcgcaaggcg tattgtaggg tggggccgta gcaactgaac cgtcattccc
     3601 acggaagtgg gaatctagaa cgaggggttt gagcaactgt ttttatccga taagtttctg
     3661 tgcggacagg tctggattcc cgcctgcgcg ggaatgacgg gtttcgagat tgcggtgttg
     3721 tcggaacgca actgaaccgt cattcccacg gaagtgggaa tctagaacgc ggggtttggg
     3781 caactgtttt tatccgataa gtttctgtgc ggacaggtct ggattcccgc ctgcgcggga
     3841 atgacgaatt tcgagattac ggtgttgtcg ggaatgacgg gtttcaagat tgcgctgtta
     3901 tcgggaatga cgggtttcga gattacggtg ttgtcgga
//
LOCUS       DAXHNP010000170         3861 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.170, whole genome shotgun sequence.
ACCESSION   DAXHNP010000170 DAXHNP010000000
VERSION     DAXHNP010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.170"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            490..1446
                     /gene="thiL"
                     /locus_tag="ACFM5C_001874"
     CDS             490..1446
                     /gene="thiL"
                     /locus_tag="ACFM5C_001874"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFC6069523.1"
                     /translation="MKEFDFIKRYLQTGTDKDVVLGIGDDAAIVRPREGFDLCFSADM
                     LLKDRHFFADVKPEDLAWKVLAVNISDMAAMGAIPRWVLLSAALPELDEVWLERFCGS
                     FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRVGMA
                     AAALNCRLKRCVLPDDVFAECEQKLLRPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
                     ILTASGVGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLD
                     AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
     gene            1439..1924
                     /locus_tag="ACFM5C_001875"
     CDS             1439..1924
                     /locus_tag="ACFM5C_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFC6069524.1"
                     /translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
                     FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
                     PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
                     F"
     gene            complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFM5C_001876"
     CDS             complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFM5C_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HFC6069525.1"
                     /translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
                     GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
                     KRLEEVYAEYANPDADFDALAEEQGRLEAIIAAGSSTGGGAEHELEIAADALRLPDWD
                     AKIGNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
                     THDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
                     EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
                     SFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKSTLFKMIAGKEQPDSGEVKIGQTVKMS
                     LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKITGQLSG
                     GERGRLHLAKTLLGGGNVLLLDEPSNDLDVGTLRALEDALLEFAGSVMVISHDRWFLD
                     RIATHILACEGDSKWVFFDGNYQEYEADKKRRLGEEGTKPKRIKYKPVTR"
BASE COUNT          787 a          936 c         1077 g         1061 t
ORIGIN      
        1 gaggcaacgc tgtactggtt taaatttaat ccactatatc ggttgaaact ctgattttaa
       61 ggcggtagga tgtgggtttg cccatagaaa gggaatcctt tctgtatcaa gccctgaaag
      121 ggataattca tacaaattca cgcctttccc cttcattggg aaatggatgg aatcgtgcca
      181 gatgtgtgcg gcactgtatg ccggatatgg ttttatcatc agcccttttc ggttgaaacc
      241 ccgtcagttg cagcgattga gcctaatcgg tggcggaagt tgccgctttg cattcggggt
      301 ggcgtgcagt gcggtgcttt gatatgccgt ttgtgtgttg aaacagggtg gtcggtgcat
      361 acgggtacgg tatggccaaa gctaaaagtg aaatacgctg aaacactgaa tgagccgctt
      421 tattgtttgt acggcctttg ctgccttgct atgatttaaa ttggattcgc ccgccggata
      481 ttttgggata tgaaagaatt tgacttcatc aaacggtatt tgcaaacagg cacggataag
      541 gatgtcgtat tgggcatagg cgacgatgcg gcgattgtcc gcccgcgtga aggcttcgat
      601 ttgtgtttca gtgcggatat gcttttgaag gacaggcatt tttttgccga tgtcaaacct
      661 gaggacttgg cttggaaggt tttggccgtc aatatttcag atatggcggc gatgggcgcg
      721 ataccgcgtt gggtgttgtt aagtgcggct ttgcccgaat tggatgaggt atggttggaa
      781 cggttttgcg gcagcttttt cggtttggca aaaaagtttg gcgtaacgtt aatcggcggc
      841 gatacgacca agggcgatat ggcgttcaat gtaaccatta tcggcgaatt gccgaagggt
      901 agggcattgc ggcgtgatgc ggcggttgcg ggcgacgata tttgggtgtc ggggcgtgtc
      961 ggtatggcgg cggcggcttt gaactgccgt ctgaaacggt gtgtgttgcc ggatgatgtg
     1021 tttgccgaat gcgaacaaaa gctgctccgc cccgagccaa gggttgggct ggggcttgcg
     1081 ctgttgccgt ttgcccgggc ggcgcaggat gtttcagacg gcctcgcgca agatttgggg
     1141 catatcctga ccgcttccgg cgtgggggcg gaaatttggg ccgattcgct gccgtcttta
     1201 tccgtattga aagatatttt gccccgagcg caatggctgt cttatacttt ggcgggcggc
     1261 gacgattacg agctggtgtt taccgcgccg gaaagttgcc gcagccgcgt gcttgatgcg
     1321 gcagaacggt gcggcgtgcc ggtaacgcgc atcggcaaaa tcaacggagg atgccgtctg
     1381 aaggttttag atgccgacgg cagggaattg gaactacatt ctttaggatt cgatcatttt
     1441 ggctgatttt aaacctgact ttgcgtggct gttgaaacga ccgttgtgtt ttttggcttt
     1501 tggtttcggc agcgggctgg ctccgttcgc gccgggtaca tttggcactt tggcggcact
     1561 gcctttggca tttgtgctga ttttgctcgg catagacggg ctgctgctgg cttttttgtg
     1621 tatcgtgctg tttatgtggg gcatacgcat ttgcgcttat gcggaacgtg aaacgggtgt
     1681 cagcgaccat ggtgggattg tttgggacga gattgtcgcc atgctgtttg tgctggcgtt
     1741 tgtgccgttc aggtggacgt ggtggctggc ggcatttgtc ctattccgtc tgtttgacgc
     1801 gctcaaaccg tctcccgtcg gttggtttga caagaatctg cacggcggtt tgggcattat
     1861 ggcggacgat atggcggctg cggtgatgac tttgattgtc ttgaggattg caatgctgtt
     1921 ttaaacggtg ctgccttgta aaaatgccgt ctgaaagcct ttcagacggc attgtttcgg
     1981 aggttaacgc gttaccggtt tgtatttgat gcgtttcggt ttcgtgcctt cttcgccgag
     2041 tcggcgtttc ttgtcggctt cgtattcctg atagttgccg tcaaagaaca cccatttgga
     2101 gtcgccttcg caagccaaga tatgcgtagc aatacggtcg aggaaccagc ggtcgtgcga
     2161 aatcaccatc acgctgccgg caaattccag caatgcgtct tccaacgcgc gcagggttcc
     2221 cacgtcgagg tcgttggacg gttcgtccag cagcaacaca ttgccaccgc ccaacaaggt
     2281 ttttgccaag tgcaaacgtc cgcgttcgcc gccggaaagc tgccccgtga ttttgctttg
     2341 gtcgctgcct ttgaaattga agcgtcccaa atattggcgg gcggggattt caaactgccc
     2401 gacctgtaaa atatcgcgac cttcggcaat gttgtcgaac acggttttgt cgttttgcaa
     2461 accttcgcgg ctttggtcaa tcaagctcat tttcacggtt tgcccgattt tcacttcacc
     2521 agaatcgggc tgctctttgc ccgcaatcat tttaaacagt gtcgatttac ccgcgccgtt
     2581 cggaccgatg atgccgacaa tcgcgcccgc aggcactttg aagctcaaat cgtcaatcag
     2641 cactttgtcg ccgaacgatt tggaaacatt cacaaattca atcacttcgt tacccaaacg
     2701 ctcggcgacg ggaatgaaga tttcctgcgt ttcattgcgt ttttggtatt cgtagttgct
     2761 catttcttca aaacgagcca aacgcgcttt ggacttggct tggcggcctt tggcattttg
     2821 gcgcacccat tccaattcct gcttcatcgc cttcacgcgc gcggcttcgg attttgcctc
     2881 gttttccaag cgtttttctt tctgctccag ccaagacgag taattgcctt tccacggaat
     2941 accatggccg cggtcgagtt ccaaaatcca ttcggcggcg ttgtcgagga agtagcggtc
     3001 gtgtgttacc gcaacgactg taccggggaa gcgcacgaga aattgctcca gccactcgac
     3061 agattccgcg tccaagtggt tggtcggctc gtccagcaaa agcatatcgg gtttgctcaa
     3121 caagagtttg cacaaggcaa cgcggcgttt ttcaccgccg gacaaattgc cgattttggc
     3181 atcccaatca ggcaggcgca gcgcgtcggc ggcgatttcc agttcgtgtt ccgcaccgcc
     3241 gcccgtggac gaacctgccg cgataatcgc ttccaagcga ccttgttctt ccgccaatgc
     3301 gtcaaaatcc gcatcaggat tggcatactc ggcatacact tcttccaaac gtttttgtgc
     3361 ggcagccact tcgcccaaac cgctttccac ttcctcgcgc acggttttct caggatcaag
     3421 ctcaggctct tgcggcaaat agccgatttt aatgccgccc atcggcacgg cttcgccctc
     3481 aaattcttta tccacgcccg ccataatccg cagtacagta gatttacccg cgccgttcaa
     3541 accgagcagg ccgattttcg cgccggggaa gaaagaaagg gaaatatctt taatgatggt
     3601 tttctgcggc ggcacaacct tgctcacgcg cagcatagaa tagacgtatt gttgggacat
     3661 ggttttctcg ttttcatcaa acaaatttca gacggccatt ttaaccgata atttgattta
     3721 agccagttta tccgcgaacc ggtattgcca aaatcgggca ggattcataa aatccgctta
     3781 tccctttgaa attatataga caaaaaaata ataatgatag gggatcgccg ccccggcaac
     3841 catttcggat tttccaaagc a
//
LOCUS       DAXHNP010000171         3845 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.171, whole genome shotgun sequence.
ACCESSION   DAXHNP010000171 DAXHNP010000000
VERSION     DAXHNP010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3845
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.171"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..2076
                     /locus_tag="ACFM5C_001877"
     CDS             <1..2076
                     /locus_tag="ACFM5C_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6069526.1"
                     /translation="GKANAFTAPITVVNYDEQALNNTEARTLVDAVAKKDASVWQFGG
                     ESNTLTGLYFRGYQLDARQFSVNGLAGMYGTQGTASVQVGSAQLIKGASTAVNGMNPE
                     GAVSGSVNIETKKAADEGNRKIGLGRFSNNRAQGTFDLGQRFGENKAFGVRANGKLRH
                     GDTPRHGYSEDNKEFAVNADYRGETLRVAFDSIYAKRKTNGGRARMQDIQNAGGRLFG
                     APDGKTNLLPSWNWQNTAGQTNMLTFEWDAFDNAQITGGIGYNKARYYGTLISPTVCL
                     NATSTCTDMQNTNASGKVTARNYDYNTGTARLTDQYFRTLSMNLSARGEFETGPVTHN
                     WSTAFDRVIRQRKTINGSGNGNSKIEVKANENIANQLASFTADYPNSWENSANLDANI
                     KVNSLALSDTLGFVDNKYRLTLGERFQTVEYTDKKSQSGDAKRFSPMLMAAWVPQPDL
                     VVYGNYMEDLEPADIKTDDSGETTMAKPRVSRQFEVGVRKNWGDFVTTLNAFQIKRPG
                     YWRGNTKKGTDFAAYKAAGGADGDEQGMERSRGIEFNAYANLLNKTLRPTFGLMYLQS
                     TVKDYPNSRDMLVNGVQVANPRVIAKAGLEWDTPFAKGLTLNSNVSYFGKSYQDTQKQ
                     YAFPSYTLVDVGARYKTKLGKNTLTVSSSVENLFNKNYWQVQRGQYDRSFAVVGLPRT
                     YWLKAELDF"
     gene            2200..3750
                     /locus_tag="ACFM5C_001878"
     CDS             2200..3750
                     /locus_tag="ACFM5C_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HFC6069527.1"
                     /translation="MKKPLISVAAALLGVALGTPYYLGVKAEESLTQQQKILQETGFL
                     TVESHQYERGWFTSMETTVIRLKPELLNNAQKYLPDNLKTVLEQPVTLVNHITHGPFA
                     GGFGTQAHIETEFKYAPETEKVLERFFGKQAPVSLANTVYFNGSGKMEVSVPAFDYEE
                     LSGIRLHWEGLTGKTVYQKGFKSYRNSYDAPLFKIKLADKGDAAFEKAHFDSETSDGI
                     NPLALGSSNLTLEKFSLEWKEGVDYNVKLNELVNLVTDLQIGAFINPNGSIAPSKIEV
                     GKLAFSTKTGESGSFINSEGQFRFDTLVYGNEKYGPLDIHIAAEHLDASALTVLKRKF
                     AQISAKKMTEEQIRNDLIAAVKGEASGLFTNNPVLDIKTFRFTQPSGKIDVGGKIMFK
                     DMKKEDLNQLGLMLKKTEADIRMSIPQKMLEDLAVSQAGNIFSVNAEDEAEGRASLDD
                     INETLRLMVDSTVQSMAREKYLTLNGDQIDTAISLKNNQLKLNGKTLQNEPEPDFDEG
                     GMVSEPQQ"
BASE COUNT         1087 a          951 c          969 g          838 t
ORIGIN      
        1 ggcaaagcca acgcctttac cgcgccgatt accgtcgtca actacgacga acaagccctc
       61 aacaacaccg aagcgcgtac tttggtggat gccgtagcga aaaaagacgc ttccgtttgg
      121 cagttcggcg gagaaagcaa cacgctgact ggactgtatt tcagaggtta tcagcttgat
      181 gcgcgccaat tcagcgtcaa cggtttggca ggtatgtacg gcacgcaagg cacggccagc
      241 gtgcaagtcg gctccgcaca actgattaaa ggcgcgtcca ccgccgtaaa cggcatgaac
      301 cctgaaggtg cggtatccgg ttccgtcaat atcgaaacca aaaaagccgc cgatgaaggc
      361 aaccgcaaaa tcggtttggg ccggtttagc aacaaccgcg cccaaggtac gttcgatttg
      421 ggtcaacgct tcggcgaaaa caaagcattc ggcgtacgcg ccaacggcaa actgcgccac
      481 ggcgacactc cgcgccacgg ttacagcgaa gacaacaaag aatttgcggt aaatgccgac
      541 tatcgcggcg aaacactgcg cgtagcgttc gattccatct acgcaaaacg caaaaccaac
      601 ggcggtcgcg cgcgtatgca ggacattcaa aacgccggcg gacgcttgtt tggcgcgccc
      661 gatggtaaaa ccaacctgct gccttcttgg aactggcaaa ataccgccgg ccaaaccaat
      721 atgcttacgt ttgaatggga tgcgtttgat aatgcacaga ttacaggcgg tatcggctac
      781 aacaaggcac gctattacgg cacgctgatt tccccgaccg tatgtttgaa tgctaccagc
      841 acttgtaccg atatgcaaaa cacaaacgcc agcggcaaag taacggcacg caactatgac
      901 tacaataccg gtactgcgcg cctgaccgac caatacttcc gcactttaag catgaacctg
      961 tctgcgcgag gcgaatttga aaccggcccg gtaacacata actggagtac ggctttcgac
     1021 cgcgttatcc gccagcggaa aaccataaac ggcagcggga acggcaacag caagatagaa
     1081 gtgaaggcaa acgaaaatat tgcgaatcaa ttggcatcgt ttacagccga ctatcccaat
     1141 tcttgggaga actctgccaa cttggatgcc aatatcaaag tcaacagcct ggctttgtcc
     1201 gacaccttgg gcttcgtgga taacaaatac cgcctgactt tgggcgaacg tttccaaaca
     1261 gtcgaatata ccgacaaaaa atcacagagc ggcgatgcca aacgtttcag cccgatgctg
     1321 atggcggcgt gggtgccgca acctgatttg gttgtgtacg gcaactatat ggaagacttg
     1381 gagcctgccg acattaaaac cgatgattcc ggtgaaacga caatggcgaa accgcgcgtc
     1441 agccgccagt ttgaagtggg cgttcgtaaa aactggggcg actttgttac gacgttgaac
     1501 gcgtttcaaa tcaaacgccc gggctactgg cgcggcaata ccaaaaaagg tactgatttt
     1561 gcagcatata aagcagcagg aggcgcagac ggagatgaac aaggcatgga acgcagccgc
     1621 ggtatcgaat tcaatgccta tgccaacctg ttaaacaaaa ccctgcgccc gactttcggc
     1681 ctgatgtacc tgcaatcgac cgtgaaagac tacccaaatt cacgcgatat gctggttaac
     1741 ggcgtacaag tcgccaatcc gcgcgtaatt gccaaggcag gtttggaatg ggatacaccg
     1801 tttgccaaag gcttgacttt aaacagcaat gtttcgtatt tcggcaagtc ttaccaagac
     1861 acgcaaaaac aatacgcctt cccatcctat accttggttg atgtaggcgc gcgctacaaa
     1921 accaagctcg gcaaaaatac gttgaccgtc agcagctcgg tggaaaatct gttcaacaaa
     1981 aactactggc aggtacagcg cggccaatac gaccgcagct tcgccgtcgt cggtctgccg
     2041 cgtacttact ggctgaaggc ggaattggat ttctgatttc tccgcatctg gaaaatgccg
     2101 tccgaacagg tttcagacgg catttctttt aaagagatat ggcgggatac gcttaaataa
     2161 tgctattcta gcgtctttga aacctgcttg tttgaagtga tgaaaaaacc tttgatttcg
     2221 gttgcggcag cattgctcgg cgttgctttg ggcacgcctt attatttggg tgtcaaagcc
     2281 gaagaaagct tgacgcagca gcaaaaaata ttgcaggaaa cgggcttctt gaccgtcgaa
     2341 tcgcaccaat atgagcgcgg ctggtttacc tctatggaaa cgacggtcat ccgtctgaaa
     2401 cccgagttgc tgaataatgc ccaaaaatac ctgccggata acctgaaaac agtgttggaa
     2461 cagccggtta cgctggttaa ccatatcacg cacggccctt ttgccggcgg atttggcacg
     2521 caggcgcaca ttgaaaccga gttcaaatac gcgcctgaaa cggaaaaagt tttggaacgc
     2581 ttttttggga aacaagctcc ggtttccctt gccaataccg tttattttaa cggcagcggt
     2641 aaaatggaag tcagtgttcc cgccttcgat tatgaagagc tgtcgggcat caggctgcat
     2701 tgggaaggat tgacgggaaa aacggtttat caaaaaggtt tcaaaagcta ccgcaacagc
     2761 tatgatgcgc ccttgttcaa aatcaagctg gcagacaaag gcgatgccgc gtttgaaaaa
     2821 gcgcatttcg attcggaaac ttcagacggc atcaatccgc ttgctttggg cagcagcaat
     2881 ctgaccttgg aaaaattctc cctagaatgg aaagagggtg tcgattacaa cgtcaagtta
     2941 aacgaactgg tcaatcttgt taccgatttg cagattggcg cgtttatcaa tcccaacggc
     3001 agcatcgcac cttccaaaat cgaagtcggc aaactggctt tttcaaccaa gaccggggaa
     3061 tcaggctcat ttatcaacag tgaagggcag ttccgttttg acacgctggt gtacggcaat
     3121 gaaaaatacg gcccgctgga catccatatc gccgccgaac atctcgatgc ttctgcctta
     3181 accgtattga aacgtaagtt tgcacaaatt tccgccaaaa aaatgaccga ggaacaaatc
     3241 cgcaatgatt tgattgccgc cgtcaaaggc gaggcttccg gactgttcac caacaatccc
     3301 gtattggaca ttaaaacttt tcgtttcaca cagccgtcgg gaaaaatcga tgtgggtgga
     3361 aaaatcatgt ttaaagacat gaagaaggaa gatttgaacc aattgggttt gatgctgaag
     3421 aaaaccgaag ccgacatcag aatgagtatt ccccaaaaaa tgctggaaga cttggcggtc
     3481 agtcaggcag gcaatatttt cagcgtcaat gccgaagatg aggcggaagg cagggcaagt
     3541 cttgacgaca tcaacgagac cttgcgcctg atggtggaca gtacggttca gagtatggca
     3601 agggaaaaat atctgacttt gaacggcgac cagattgata ctgccatttc tctgaaaaac
     3661 aatcagttga aattgaacgg taaaacgttg caaaacgaac cggagccgga ttttgatgaa
     3721 ggcggtatgg tttcagagcc gcagcagtaa tgggtcaaat gccgtctgaa atgttcaggc
     3781 ggcattttgt tgtattggaa actgccgttt tcaaccattc ctttagataa gccgtgtcgg
     3841 attcg
//
LOCUS       DAXHNP010000172         3746 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.172, whole genome shotgun sequence.
ACCESSION   DAXHNP010000172 DAXHNP010000000
VERSION     DAXHNP010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.172"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..187
                     /locus_tag="ACFM5C_001879"
     CDS             <1..187
                     /locus_tag="ACFM5C_001879"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069528.1"
                     /translation="MTAVGFLFFLIKSCRVVFLDSRFCGNDGGEVSVFSDKFLLRCVS
                     GFPPYMMRSIKGAHYFS"
     gene            593..1801
                     /locus_tag="ACFM5C_001880"
     CDS             593..1801
                     /locus_tag="ACFM5C_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6069529.1"
                     /translation="MSEAEYFSHFISNGNGKLLEIPQRRGRQDGVFIDWLSFTLHEDS
                     LLKVSGCPLVSDAEYMFVLSKKLEEILGFGITSRCKSKGNKFYDSMFRLGSEEVDYGE
                     VHYGGQRNTVLIELKGVGCNIANPGWELRLKQFLEDSLRPRITRVDLALDFFDGEYTP
                     EQALLDHDNGFFDNSNMRPKSEMVGTAWRREDGSGKTFYVGRKKNSRFVRVYEKGRQL
                     GDKESKWVRFEIQFNHGDMEIPLDILINQGSYFSGAFPICQKFKNMPNPERFDYRKKV
                     ANLTFQHKLRYAKNAVGKLINFMFDMGFDSDEIVRYLKADLGYPKGLEPEKYSLAGLK
                     ESLKFGFIHEQPDVDLEVELEELGIIKFKQSDKFDPDKRLFDPHHDVESERQYQLYLD
                     RMYDLHANQN"
     gene            1822..2133
                     /locus_tag="ACFM5C_001881"
     CDS             1822..2133
                     /locus_tag="ACFM5C_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069530.1"
                     /translation="MFNQTQTVTYPATFLGAKKFKGEIDGSNIDTCSVLVATPLPAQS
                     GNAVGFTAAQMKFGDSKNFSKLENLKYPCEVMVTVEMTSTGKGMVPSLIDFQVAEKPK
                     G"
     gene            2137..2337
                     /locus_tag="ACFM5C_001882"
     CDS             2137..2337
                     /locus_tag="ACFM5C_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069531.1"
                     /translation="MKFEERFIVQDLETHDFIYPDPFGDVGFTQNIKSAGQFESYEDA
                     LNSGINEIGGGFQIFQFFVKSE"
     gene            2564..2794
                     /locus_tag="ACFM5C_001883"
     CDS             2564..2794
                     /locus_tag="ACFM5C_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069532.1"
                     /translation="MNIVKKYAVKAALAAGIFTPAIVMADTFDASAIGTQVANVIMGF
                     VSMVSAVGMAAITVILAIQGFKMAWSMIKSVR"
     gene            2822..3121
                     /locus_tag="ACFM5C_001884"
     CDS             2822..3121
                     /locus_tag="ACFM5C_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069533.1"
                     /translation="MGYRVGINCFDTRLQADDYLLSSLPPTVTQDGKIIRPERVGDKW
                     ILNGKPVTLSYPKCSNYEQVKSGAYLGSMVLILFVVIYGFRLLINFLKDIGKVGA"
     gene            3240..3560
                     /locus_tag="ACFM5C_001885"
     CDS             3240..3560
                     /locus_tag="ACFM5C_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HFC6069534.1"
                     /translation="MNKPFITQAQLALYKYQPSSKYFGQSMALIASKEFEEFVRNVKE
                     YDVIECFSYFLNKRVTHNIWKIYFSDESNIFIRKSEENGKISHEFIYSEFSDSNTDFN
                     VLFS"
     gene            3544..>3746
                     /locus_tag="ACFM5C_001886"
     CDS             3544..>3746
                     /locus_tag="ACFM5C_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6069535.1"
                     /translation="MCCSLSFAEPARIDDRIIKFRPSKSKFFESTGYRKINNEFSKFT
                     EAANVEHIPTGAKARINAKITASV"
BASE COUNT         1138 a          636 c          856 g         1116 t
ORIGIN      
        1 aatgacggcg gtggggtttc tgttttttct gataaagtcc tgccgcgttg tgtttctaga
       61 ttcccgcttt tgcgggaatg acggcggtga ggtttctgtt ttttccgata aattcctgtt
      121 gcgttgcgtt tctggattcc cgccttatat gatgcgctct atcaaagggg cgcattactt
      181 ttcttaacat tcccctttga cagccaagtg aaaggggctt ttttatgtca gtagcaaatg
      241 taatattttc ttgttcctat tggagaatat ttaaaaaatc agattattgc gttttatgtt
      301 tctatcagtt caggcatggt gaaccgcata aactcgctga acaagaaaat ttttcaaagc
      361 tttatcaggc gttcgattat atagattcgg ttggctcgaa ttttccggta attatcacaa
      421 cagacggttg tggtctttct tcttgatctt taacagtttg tcaggattgg gctttcggtc
      481 gttgaccgtt ggacgcgctt tagcgcggca gacgggaaac ggctgaaagc ccccccccct
      541 gactaacagg gggggagcga aataaaacaa atccctaaag gtactgaaca aaatgagtga
      601 agcagaatat ttttcccatt tcatatctaa cggcaatggg aagttattag aaattccgca
      661 acgtaggggc aggcaggacg gcgtttttat agattggttg tcattcacac tgcacgaaga
      721 ttccttgctg aaagtttccg gatgcccctt agtttccgat gccgaatata tgtttgtttt
      781 aagcaaaaaa ttggaggaaa tattagggtt tggcatcacg agcagatgca aatcgaaggg
      841 caataaattt tacgattcga tgtttaggtt gggatcggaa gaagttgact acggcgaagt
      901 ccattacgga ggtcagcgaa atacggtttt aatcgaattg aaaggtgtag gttgcaacat
      961 tgcaaatcca ggttgggaat tgaggcttaa gcagtttttg gaagattcat tgaggccgag
     1021 gataacgcgg gtagatttgg cacttgattt ttttgatggg gagtacacgc cggaacaggc
     1081 acttttggat cacgataacg gttttttcga taacagtaac atgaggccga aatctgaaat
     1141 ggttggaacg gcttggcgga gagaggacgg gagcggcaag acattttatg taggtcgcaa
     1201 gaaaaattct cgttttgtgc gtgtttatga gaaaggcagg cagctaggcg ataaagaaag
     1261 caagtgggta aggttcgaaa ttcagtttaa tcatggagat atggaaatac ctttggatat
     1321 tctgataaat caaggttctt acttttcagg cgcttttccg atttgtcaga aatttaaaaa
     1381 tatgccgaat ccggaaaggt tcgattaccg taaaaaagtg gctaatttaa cttttcagca
     1441 taaattgaga tacgcaaaaa acgcggtcgg caaactgatt aatttcatgt ttgatatggg
     1501 ttttgatagt gatgaaattg tcagatatct gaaggcagat ttggggtatc ccaaagggct
     1561 agaacctgaa aaatattcgt tggccggatt gaaggaatct ttgaaattcg gctttatcca
     1621 cgaacaaccg gatgtagatt tagaggttga attggaagaa ctcggaatta tcaaatttaa
     1681 gcaatcagat aaattcgatc cggataaaag gcttttcgat ccacatcacg atgtagaaag
     1741 tgagaggcaa tatcagcttt atctcgacag aatgtatgat cttcatgcaa atcaaaatta
     1801 acctaaaaag gaaaaattaa tatgtttaat caaactcaaa ctgtaactta tcccgcaact
     1861 tttttaggag ctaaaaaatt caaaggcgaa attgatggct ctaatatcga cacttgttcc
     1921 gtattggttg caacaccttt gccggcacag tcgggaaatg ctgttggatt cacggcagca
     1981 caaatgaagt tcggggacag taagaatttc tcaaaattag agaatctcaa atacccgtgc
     2041 gaagttatgg taacggttga aatgacttcg acaggtaagg gcatggttcc ttcattaatt
     2101 gattttcagg tggcagaaaa gccgaaaggt tgatttatga aatttgaaga acgtttcata
     2161 gttcaagatt tagaaacgca tgactttatt tatcccgatc cgttcggtga cgtggggttt
     2221 actcaaaata ttaaatcagc aggtcaattt gaaagttacg aagatgcatt gaactcaggc
     2281 ataaatgaaa taggcggagg attccaaata tttcagttct tcgtgaaatc ggaataaaag
     2341 taaaacaggc tcggcgggcg gtctgtcaac ctttcacaaa gcccgcaaaa aggattaaaa
     2401 atgaataaag caactttaat tatcggattt tttgtttgcc tcattctttt cattttctca
     2461 attctctatt tcataaatta aaaacaaaat tcgggagcag gcttcgcccg gatttaaacc
     2521 taagaagccg tattacttta aatatcaaaa aaggaaaaaa acgatgaaca tcgttaaaaa
     2581 atacgctgta aaagcagcct tggcagccgg tatcttcaca ccggccattg ttatggcaga
     2641 tacctttgat gcatccgcga ttggtacgca agtagcgaat gtaatcatgg gtttcgtgtc
     2701 aatggtttcc gccgtgggta tggcggccat taccgtgatt cttgcaatcc aaggcttcaa
     2761 aatggcttgg agcatgatta aatctgtcag ataaacagag tgaagaaaaa ggggcgtata
     2821 aatgggctat cgtgtcggca taaattgttt tgatacaaga ttgcaggcag acgactattt
     2881 attgtcgtcc cttcctccta ctgttaccca ggacggaaaa atcatcaggc cggaaagggt
     2941 gggcgataaa tggattttga acggaaagcc ggtcacgctg tcttatccga aatgttcgaa
     3001 ttacgaacaa gttaaatccg gagcttatct cgggtctatg gttttaattc tgtttgtcgt
     3061 tatttacggc ttcaggctgc tgattaattt cttaaaagac ataggcaaag taggggcgtg
     3121 atgatgtttg tcgatttttg gtttttgctc ggatttttcc tggctttgtc tgtcgctttg
     3181 atatttatat gacgtgtttt aaaatcaggc tttcaaaaca acctttgaaa gacagaaaca
     3241 tgaacaagcc gtttatcacg caggcgcagt tggcacttta taaatatcag ccgtccagca
     3301 agtattttgg gcagtcgatg gcattaattg cgtctaagga atttgaagag tttgtaagaa
     3361 atgtaaaaga atacgacgta atagaatgtt tctcttattt tttaaataag agggtaacgc
     3421 ataatatttg gaaaatttat ttttctgatg agtctaatat ttttattagg aagtcagaag
     3481 aaaatggaaa aatttcgcat gaatttattt actcggaatt ttctgatagc aacaccgatt
     3541 ttaatgtgtt gttctcttag ttttgcagaa ccagcaagaa tagatgatcg aataataaaa
     3601 tttaggccat ctaaatcaaa gttttttgaa tctacaggat atagaaaaat caataatgaa
     3661 ttttctaaat tcacagaagc ggcaaatgtc gaacatatcc ccacgggcgc aaaagcccga
     3721 atcaacgcaa agataaccgc cagcgt
//
LOCUS       DAXHNP010000173         3742 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.173, whole genome shotgun sequence.
ACCESSION   DAXHNP010000173 DAXHNP010000000
VERSION     DAXHNP010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.173"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            216..782
                     /gene="azu"
                     /locus_tag="ACFM5C_001887"
     CDS             216..782
                     /gene="azu"
                     /locus_tag="ACFM5C_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HFC6069536.1"
                     /translation="MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAE
                     AAPADAAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPK
                     ASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEEASLTLDPA
                     KLADGEYKFACTFPGHGALMNGKVTLVD"
     gene            877..1386
                     /locus_tag="ACFM5C_001888"
     CDS             877..1386
                     /locus_tag="ACFM5C_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6069537.1"
                     /translation="MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGC
                     NQIVLQTIRQITRYFNVAAPLHHEDEEEDFFPLLLQYAPQAREGVDELLRQHIGLHDN
                     WAAVSAEFAKLEADNAYVPDAEAFKRFVAGYDVHLAIEEPLFDMGNTFIPKEKLTEIG
                     EIMAARRRK"
     gene            1411..2031
                     /locus_tag="ACFM5C_001889"
     CDS             1411..2031
                     /locus_tag="ACFM5C_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HFC6069538.1"
                     /translation="MLTSKSCDLFNIPFFQFSQLKKYQPESIPQIKADYKENWQVWQQ
                     LIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYEQYKNSAAILSILLNRRRLSV
                     SLDWHCYKADVSPIALPEYNRWLDDFDTDKYAAFDMWHGAESEYDDYRTVAQQSESDR
                     KLQNDEDFFCIGKHIERDDLGKQDVAKWIAETVEDLLPLYEACHGK"
     gene            2144..3289
                     /gene="dapE"
                     /locus_tag="ACFM5C_001890"
     CDS             2144..3289
                     /gene="dapE"
                     /locus_tag="ACFM5C_001890"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFC6069539.1"
                     /translation="MTETQSLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEEL
                     HFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADM
                     KTSIACFVTACERFVAEHPDHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYC
                     IVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQ
                     EVWDEGNKYFPPTSFQISNINGGTGATNVIPGELSVKFNFRFSTESTEAGLKQRVHAI
                     LDKHGVQYDLQWSCSGQPFLTHAGKLTDVARAAIAEICGVETELSTTGGTSDGRFIKA
                     IAKELIELGPSNATIHQINENVRLNDIPKLSAVYEGILARLLAGNAV"
BASE COUNT          965 a          979 c          933 g          865 t
ORIGIN      
        1 ctaaagaaat aggttcgggg taaaattgcc cttttttggg taaacgattg taaacttgca
       61 aacaggcttt gattttaaat gaaatttgta gcaaaatgcc accccgaaac atctgtttgt
      121 gcaacgcggc ggaatctttt tcaaggtttt gttaatggcg gttgcacttt gattcctgta
      181 aaaccgaata ttattttatc gattggagat ttgttatgaa agcgtatctg gctctgattt
      241 ctgctgccgt tatcggtttg gctgcctgct ctcaagaacc tgccgcgcct gctgccgagg
      301 caactcctgc tgctgaagca cccgcttccg aagcacctgc cgccgaagct gctcctgcag
      361 atgctgctcc tgcagatgct gccgaagccc ctgctgccgg caactgtgcg gcaactgtcg
      421 aatccaacga caatatgcag ttcaacacca aagacatcca agtcagcaaa gcatgtaaag
      481 agtttaccat cactctgaaa cataccggta cgcaacccaa agccagcatg ggtcacaatc
      541 tcgtgattgc caaagctgaa gacatggacg gcgtatttaa agacggcgta ggtgctgccg
      601 ataccgacta tgtcaaacct gatgatgcac gcgttgttgc ccataccaaa ctgatcggcg
      661 gcggcgaaga agcttccctg actctggatc ctgctaaatt ggccgacggc gaatataaat
      721 tcgcttgtac cttcccaggt cacggtgctt tgatgaacgg caaagtgact ttggtcgatt
      781 aatccgctta aagtctcaaa agacggacag cctgctttgt gcaggctgtt ttattataaa
      841 atgactgctt gaaaagtgcc cgttgagaac gaaaacatga atccgtttga aaccaaaagc
      901 gttacctttg ccgaaccgat tgaaatgctg tatgcctgcc acggcaaagt gcgccgtttt
      961 tgcggacaag tcgccatgct gtcggactac atcgccgaaa acggctgcaa tcaaattgtt
     1021 ttgcaaacca tccgccaaat cacccggtat ttcaacgttg ccgcgccgct gcatcatgag
     1081 gacgaagaag aagacttttt cccgctgctg ctgcaatacg cgccgcaagc acgtgaaggt
     1141 gtggacgagc ttttacgcca acatatcggg ctgcacgaca actgggcggc tgtttccgcc
     1201 gaatttgcca agctcgaagc agacaatgct tatgttcccg atgcggaagc gttcaaacgt
     1261 tttgtggcgg gatatgatgt tcatttggcg attgaagagc cgctgtttga tatgggcaac
     1321 acctttatcc ctaaagaaaa actgaccgaa atcggtgaaa tcatggcggc gcgtcggcgc
     1381 aaataaggta atcgtctcaa ggaatacact atgcttacct cgaaaagttg cgatttgttc
     1441 aatatcccgt ttttccaatt ttcccagctt aaaaaatacc agcctgaaag cattccgcaa
     1501 atcaaggcag actataaaga aaactggcag gtatggcagc agctgatcca gcaggttgcc
     1561 gccgaattgg gtgcgccgtt cgcgccgccg catatcgaac gctggtgtaa cggctggcag
     1621 gtgcgcgccc atttctttgc ctacttcaaa tacgaacaat ataaaaattc cgccgcgatt
     1681 ttatcgattt tattgaaccg ccgccgcctg agcgtcagct tggattggca ctgctacaaa
     1741 gccgacgtgt cgccgattgc gctgcccgaa tacaaccgct ggttggatga tttcgatacc
     1801 gacaaatacg ccgcattcga tatgtggcac ggcgcggaaa gcgaatatga cgactaccgc
     1861 accgtcgcac aacaaagcga atccgaccga aagttgcaaa acgacgaaga ctttttctgc
     1921 atcggcaaac acatcgagcg cgacgatttg ggcaagcagg atgtcgcgaa atggatagcg
     1981 gaaacggtgg aagatttgct gccgctttac gaagcctgcc acggcaaatg attcagaaga
     2041 ctgatgggta aaatacccac cccgtatgcc aacctaacct aaatgccgtc tgaaaatcac
     2101 attcagaacg tttcagacgg tctaatttca aaagtgaaca aatatgaccg aaactcaatc
     2161 cctagagctt gccaaagagc tgatttcccg accatccgtt acccctgacg acagggattg
     2221 ccaaaaactc cttgccgaac gcctgcacaa aatcggtttt gcggctgaag aactccattt
     2281 cggcgacacc aaaaacatct ggttgcgacg cggcacgaaa gctcccgtcg tctgttttgc
     2341 agggcatacc gacgttgtac cgacaggtcc tgtcgaaaaa tgggattcgc ccccgttcga
     2401 accggccgag cgcgacggaa gattatacgg gcgcggcgcg gcagacatga aaaccagcat
     2461 cgcctgcttc gttaccgcct gtgaacgctt cgttgccgaa catcccgacc accaaggcag
     2521 cattgcgctt ctgattactt ccgacgaaga gggcgacgcg ttggacggca cgaccaaagt
     2581 cgtcgatgta ttgaaagcgc gcgacgagct tatcgactac tgcatcgtcg gcgagccgac
     2641 cgccgtggac aaattgggcg atatgattaa aaacggccgg cgtggctcgc tgtcgggcaa
     2701 cctgaccgtc aaaggcaagc aaggtcatat tgcctatccg catttggcaa tcaatcccgt
     2761 ccatactttt gccccggcct tgttagagct gacgcaggaa gtctgggatg aaggcaacaa
     2821 atacttcccg ccgaccagct ttcaaatttc caatatcaac ggcggtacag gcgcgaccaa
     2881 tgtcattccg ggcgagctga gcgtcaaatt caatttccgc ttctccaccg agtccaccga
     2941 agcagggctg aaacaacgcg tccacgccat tttggacaaa cacggtgtgc aatacgattt
     3001 gcagtggtcg tgttcggggc agcccttcct gacccacgcg ggcaaactga ccgacgtggc
     3061 acgcgccgcc attgccgaaa tctgcggcgt agagaccgaa ttgtccacca ccggcggcac
     3121 ttcggacgga cgcttcatca aagccattgc aaaagaactc atcgaattag gcccgtccaa
     3181 tgcgaccatc caccaaatca acgaaaacgt gcggctaaac gacattccga agctgtctgc
     3241 ggtgtatgag gggatattgg cgcggttgtt ggctggaaat gccgtctgaa agcagcttgc
     3301 ttgccggata cggatgtccg accatttgct tagacctaac gtgggtttga gataacacat
     3361 tgatttttta tgtagagcga tttatttcaa cggcaatcca ttccctctcc cgtgggagag
     3421 ggttagggag agggcatcgg ggcggtaacg gaaatattgt ctgtatctgc cccgttttac
     3481 cctctcccca accctccccc acaggggagg gagtcaagtt gcaggtacgc cgacggaatt
     3541 tcgcttcgca ttaactgcct tattttgaac gcacgtcaaa cttaaatttg caatgccgtc
     3601 tgaaaagaag atgggctgtc ggatacggat gtccgaccat tttattagac ctaacgtggg
     3661 tttgagataa cacattgatt ttttatgtag agcgatttat ttcaacggca atccattccc
     3721 tctctcgtgg gagagggtta gg
//
LOCUS       DAXHNP010000174         3722 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.174, whole genome shotgun sequence.
ACCESSION   DAXHNP010000174 DAXHNP010000000
VERSION     DAXHNP010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3722
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.174"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            275..3478
                     /gene="nalP"
                     /locus_tag="ACFM5C_001891"
     CDS             275..3478
                     /gene="nalP"
                     /locus_tag="ACFM5C_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endopeptidase autotransporter NalP"
                     /protein_id="HFC6069540.1"
                     /translation="MRTTPTFPTKTFKPAAMALAVATTLSACLGGGGGTSAPDFNAGG
                     TGIGSNSRATTAKSAAVSYAGIKNEMCKDRSMLCAGRDDVAVTDRDAKINAPPPNLHT
                     GDFTNPNDAYKNLINLKPAIEAGYTGRGVEVGIVDTGESVGSISFPELYGRKEHGYNE
                     NYKNYTAYMRKEAPEDGDGKDIEASFDDEAVIETEAKPTDIRHVKEIGHIDVVSHIIG
                     GRSVDGRPAGGIAPDATLHIMNTHDGTKNEIMSAAIRNAWVKLGERGVRIVNNSFGTT
                     SRAGTADHFQIANSEEQYRQALLAYSGGDKTDEGIRLMQQSDYGNLSYHIRNKNMLFI
                     FSASNDAQAQPNTLTLLPFYEKDAQKGIITVAGVDRSGEKFNGSNHCGITAMWCLSAP
                     YEASVRFTRTNPIQIAGTSFSAPIVTGTAALLLQKYPWMSNDNLRTTLLTTAQDIGAV
                     GVDSKFGWGLLDAGKAMNGPASFPFGDFTADTKGTSDIAYSFRNDISGTGGLIKKGGS
                     QLQLHGNNTYTGKTIIEGGSLVLYGNNKSDMRVETKGALIYNGAASGGSLNSDGIVYL
                     ADTDRSGANETVHIKGDLQLGGEGTLYTRLGKLLKVDGTAMTGGKLYMSARGKGAGYL
                     NRTGQRVPFLSAAKIGRDYSFFTNIETDGGLLASLDSVEKTAGSEGDTLSYYVRRGNA
                     ARTASAAAHSAPAGLKHAVEQGGSNLENLMVELDASESSATPETVETAAADRTDMPGI
                     RPYGATFRAAAAVQHANAADGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHN
                     GTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSE
                     NSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLM
                     QLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAG
                     LKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGL
                     GADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF"
BASE COUNT         1010 a         1017 c          990 g          705 t
ORIGIN      
        1 atccactata actagggaaa ttcaaattaa gttagaatta tccctatgag aaaaagccgt
       61 ctaagccggt ataaacaaaa taaactcatt gagctatttg tcgaaagttc aaatttccat
      121 tttaaaacaa ttagtaaaat cgagtttatc ctagttgtcc aagacaaccc ctataataat
      181 ataattcaaa atataaaaac gggttacatc taaacattac ggaattttta ttccctcgcc
      241 tgaattctat tgtcagattc aaggagacct catcatgcga acgaccccaa ccttccctac
      301 aaaaactttc aaaccggctg ccatggcgtt agctgttgca acaacacttt ctgcctgctt
      361 aggcggcggc ggcggcactt ctgcgcccga cttcaatgca ggcggcaccg gtatcggcag
      421 caacagcaga gcaacaacag cgaaatcagc agcagtatct tacgccggta tcaagaacga
      481 aatgtgcaaa gacagaagca tgctctgtgc cggtcgggat gacgttgcgg ttacagacag
      541 ggatgccaaa atcaatgccc cccccccgaa tctgcatacc ggagacttta caaacccaaa
      601 tgacgcatac aagaatttga tcaacctcaa acctgcaatt gaagcaggct atacaggacg
      661 cggggtagag gtaggtatcg tcgacacagg cgaatccgtc ggcagcatat cctttcccga
      721 actgtatggc agaaaagaac acggctataa cgaaaattac aaaaactata cggcgtatat
      781 gcggaaggaa gcgcctgaag acggagacgg taaagacatt gaagcttctt tcgacgatga
      841 ggccgttata gagactgaag caaagccgac ggatatccgc cacgtaaaag aaatcggaca
      901 catcgatgtg gtctcccata ttattggcgg gcgttccgtg gacggcagac ctgcaggcgg
      961 tattgcgccc gatgcgacgc tacacataat gaatacgcat gatggaacca agaacgaaat
     1021 aatgtctgca gccatccgca atgcatgggt caagctgggc gaacgtggcg tgcgcatcgt
     1081 caataacagt tttggaacaa catcgagggc aggcactgcc gaccatttcc aaatagccaa
     1141 ttcggaggag cagtaccgcc aagcgttgct cgcctattcc ggcggtgata aaacagacga
     1201 gggtatccgc ctgatgcaac agagcgatta cggcaacttg tcctaccaca tccgtaataa
     1261 aaacatgctt ttcatttttt cggcaagcaa tgacgcacaa gctcagccca acacactgac
     1321 cctattgcca ttttatgaaa aagatgctca aaaaggcatt atcacagtcg caggcgtaga
     1381 ccgcagtgga gaaaagttca atggctccaa ccattgcgga attactgcca tgtggtgcct
     1441 atcggcaccc tatgaagcaa gcgtccgttt cacccgtaca aacccgattc aaattgccgg
     1501 aacatccttt tccgcaccca tcgtaaccgg cacggcggct ctgctgctgc agaaataccc
     1561 gtggatgagc aacgacaacc tgcgtaccac gctgctgaca acggctcagg acatcggtgc
     1621 agtcggcgtg gacagcaagt tcggctgggg actgctggat gcgggtaagg ccatgaacgg
     1681 acccgcgtcc tttccgttcg gcgactttac cgccgatacg aaaggtacat ccgatattgc
     1741 ctactccttc cgtaacgaca tttcaggcac gggcggcctg atcaaaaaag gcggcagcca
     1801 actgcaactg cacggcaaca acacctatac gggcaaaacc attatcgaag gcggttcgct
     1861 ggtgttgtac ggcaacaaca aatcggatat gcgcgtcgaa accaaaggtg cgctgattta
     1921 taacggggcg gcatccggcg gtagcctgaa cagcgacggc attgtctatc tggcagatac
     1981 cgaccgatcc ggcgcaaacg aaaccgtgca catcaaaggc gatctgcagc tgggcggcga
     2041 aggtacgctg tacacacgtt tgggcaaact gctgaaagtg gacggtacgg cgatgaccgg
     2101 cggcaagctg tacatgtcgg cacgcggcaa aggggcaggc tatctcaacc gtaccggaca
     2161 acgtgttccc ttcctgagtg ccgccaaaat cgggcgggat tattctttct tcacaaacat
     2221 cgaaaccgac ggtggtctgc tggcttccct cgacagcgtc gaaaaaacag cgggcagtga
     2281 aggcgacacg ctgtcctatt atgtccgtcg cggcaatgcg gcacggactg cttcggcagc
     2341 ggcacattcc gcgcccgccg gtctgaaaca cgccgtagaa cagggcggca gcaatctgga
     2401 aaacctgatg gtcgaactgg atgcctccga atcatccgca acacccgaga cggttgaaac
     2461 tgcggccgcc gaccgcacag atatgccggg catccgcccc tacggcgcaa ctttccgcgc
     2521 agcggcagcc gtacagcatg cgaatgccgc cgacggtgta cgcatcttca acagtctcgc
     2581 cgctaccgtc tatgccgaca gtaccgccgc ccatgccgat atgcagggac gccgcctgaa
     2641 agccgtatcg gacgggttgg accacaacgg cacgggtctg cgcgtcatcg cgcaaaccca
     2701 acaggacggt ggaacgtggg aacagggcgg tgttgaaggc aaaatgcgcg gcagtaccca
     2761 aaccgtcggc attgccgcga aaaccggcga aaatacgaca gcagccgcca cactgggcat
     2821 gggacgcagc acatggagcg aaaacagtgc aaatgcaaaa accgacagca ttagtctgtt
     2881 tgcaggcata cggcacgatg cgggcgatat cggctatctc aaaggcctgt tctcctacgg
     2941 acgctacaaa aacagcatca gccgcagcac cggtgcggac gaacatgcgg aaggcagcgt
     3001 caacggcacg ctgatgcagc tgggcgcact gggcggtgtc aacgttccgt ttgccgcaac
     3061 gggagatttg acggtcgaag gcggtctgcg ctacgacctg ctcaaacagg atgcattcgc
     3121 cgaaaaaggc agtgctttgg gctggagcgg caacagcctc actgaaggca cactggtcgg
     3181 actcgcgggt ctgaagctgt cgcaaccctt gagcgataaa gccgtcctgt ttgcaacggc
     3241 gggcgtggaa cgcgacctga acggacgcga ctacacggta acgggcggct ttaccggcgc
     3301 gactgcagca accggcaaga cgggggcacg caatatgccg cacacccgcc tggttgccgg
     3361 tctgggcgcg gatgtcgaat tcggcaacgg ctggaacggc ttggcacgtt acagctacgc
     3421 cggttccaaa cagtacggca accacagcgg acgagtcggc gtaggctacc ggttctgacg
     3481 gacaggaagc agacagccgc aaagatcacg gtctttgcgg ctgtttctta tgaaaagaaa
     3541 accctattcc aattgcctgc ttctattgtt tcaagacttc ttccaaagat tcggcatcaa
     3601 tcagatgtat agcggattaa caaaaatcag gacaaggcgg cgaagccgca gacagtacaa
     3661 atagtacgga accgattcac tcggtgcttg agcaccttag agaatcgttt ctttgagcta
     3721 ag
//
LOCUS       DAXHNP010000175         3684 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.175, whole genome shotgun sequence.
ACCESSION   DAXHNP010000175 DAXHNP010000000
VERSION     DAXHNP010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.175"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..294)
                     /locus_tag="ACFM5C_001892"
     CDS             complement(<1..294)
                     /locus_tag="ACFM5C_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T cell/B cell stimulating protein TspB"
                     /protein_id="HFC6069541.1"
                     /translation="MFLILGRNFLKIILCFSFFVPKFALASVNVPGKFDRVEVYDDGR
                     YLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVS"
     gene            complement(641..943)
                     /locus_tag="ACFM5C_001893"
     CDS             complement(641..943)
                     /locus_tag="ACFM5C_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069542.1"
                     /translation="MGYRVGMNCFDTRLQADDYLLSSLPPTVTEEGKIIRPERVGDKW
                     ILNGKPVTLSYPECSNFEQIKQGSYVGSTVLILFVVIFGFRLLINFLKDMGKVGTD"
     gene            complement(971..1201)
                     /locus_tag="ACFM5C_001894"
     CDS             complement(971..1201)
                     /locus_tag="ACFM5C_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069543.1"
                     /translation="MNIVKKYAVKALLAAGIFTPAIVMADGFDAAAIGTQVANVIMGF
                     VAMVSAVGMAAITVILAIQGFKMAWSMIKSVK"
     gene            complement(1439..1639)
                     /locus_tag="ACFM5C_001895"
     CDS             complement(1439..1639)
                     /locus_tag="ACFM5C_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069544.1"
                     /translation="MKFEERFIVQDLETHDFIYPDPFGDVGFTQNIKSAGQFESYEDA
                     LNSGINEMGGGFQIFQFFVKSE"
     gene            complement(1643..1954)
                     /locus_tag="ACFM5C_001896"
     CDS             complement(1643..1954)
                     /locus_tag="ACFM5C_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069545.1"
                     /translation="MFNQTQTVTYPATFLGAKKFKGEIDGSNIDTCSVLVATPLPAQS
                     GNAVGFTAAQMKFGDSKNFSRLENLKYPCEVMVMVEMTSTGKGMVPSLIDFQVAEKPK
                     G"
     gene            complement(1966..3180)
                     /locus_tag="ACFM5C_001897"
     CDS             complement(1966..3180)
                     /locus_tag="ACFM5C_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6069546.1"
                     /translation="MSEVEYFSHFISDGKGKLLEIPQRRGKQDGVFVDWISFTFHEDT
                     LLKVSGCPLFSDAEYMYVLSRKLEEILGFGITRKCKSRGNKFYESMYRLGSDDVDYGE
                     VHFGGQRNTVLVELKGTGCSVASPGWELRLKQFLDDSIRTRITRIDLALDFFDGEYTP
                     DQALLDHDNGFFDNSNQRPKSETIGTAWRNEDGSGKTFYVGRKKNSRFVRVYEKGRQL
                     GDKESKWVRFEIQFNYGDIEIPLDILINQGSYFCGAFPICRKFKNMPVPERFDQRKKT
                     LNLTFEHKLHYAKNAVGKLVNFMIEMGFDNSEIVESLKADSGFPKGLEPEKYALEMLR
                     DGLKHGFIHEQPDIDLEIELDELGVIAFKNSDKFDREKRLFSPDYDVEKERKYQEYLS
                     KVYHQNVDYDYF"
BASE COUNT         1171 a          857 c          545 g         1111 t
ORIGIN      
        1 agatacaacc gaactaactt tacccgtact tgatgctcca gtagatacat gcctaacttt
       61 taaatcttga gcttctgaag ttaaatatct tcccgattct ctatcaaata cacctttcca
      121 aattcttctt cttttgtcat ctgaacctcg aatacctaaa tatctgccat catcataaac
      181 ttcaacccta tcaaatttac ccggaacatt tactgatgcc aatgcaaatt taggtacaaa
      241 aaaactaaag cataggataa tctttaaaaa atttcgccct aggataagaa acataacatt
      301 ttgcttcatc taatttaatt aataatgtag aagaatcagg gaattgaatt tctataaaat
      361 ctctatcata acgatgaaag aaattcctaa aaatatcaaa tgaaaacgaa gttttaaaaa
      421 ccccttttct aatcaattcc ctataataaa ttaacgcttg tggtaaatct ctataaatat
      481 gtgaatcagt ttgaaattta actaaatgat attcagaaat aaacataatt cggacctttt
      541 aaaacactct aaaaagccga ttctaccaac cgttaccaaa acagccaagc aacagacaaa
      601 gccaagaaga aaccgagaag aaaccaaaaa tcaataatca tcaatcagta ccaaccttgc
      661 ccatgtcttt taagaaatta atcagaagcc tgaaaccgaa aatgactacg aacagaatta
      721 gaaccgtcga accgacataa gaaccttgct ttatctgctc aaaattggaa cattccggat
      781 aagacaacgt aaccggcttt ccgttcaaaa tccatttatc gcccaccctt tccggcctga
      841 tgatttttcc ttcttctgta acagtaggag gaagagacga caataaatag tcgtctgcct
      901 gcaatcttgt atcaaaacag ttcatgccga cacgataacc cattcacgcg cccctctttc
      961 ttcactgccg ttatttgaca gatttaatca tgctccaagc cattttgaag ccttggattg
     1021 ccaaaatgac ggtaatggcc gccataccca cggcggaaac catcgcaacg aaacccatga
     1081 ttacattcgc cacttgcgta ccaatcgcgg ctgcatcaaa gccatctgcc ataacaatag
     1141 ccggtgtgaa gataccagct gccaacaatg cttttacagc atatttttta acgatgttca
     1201 tcgttttttt cctttttttg atatttaaaa taagacgact tcttgacttg cttcatccgg
     1261 acgaagtctt ttccgaatct cgtttttagc cgataaaata gaggattgcg aaaagaaaaa
     1321 gaaacataca gaccacccag ccgataatta gtgttgcaag gttcattttc atgatatttt
     1381 tcctttgttg cgggctttgt gaaaggttaa cagaccgccc gccgagcctg tttttctttt
     1441 attccgattt tacgaagaac tgaaatatct ggaatcctcc gcccatttca tttatgcctg
     1501 aattcaacgc atcttcgtaa ctttcaaatt gacctgctga tttaatattt tgagtaaacc
     1561 ccacatcacc gaacggatcg ggataaataa agtcatgcgt ttctaaatct tgaactatga
     1621 aacgttcttc aaatttcata aatcaacctt tcggcttttc cgccacctga aaatcaatta
     1681 atgacggaac catgccttta cctgtcgaag tcatttcaac cattaccata acttcgcacg
     1741 gatatttgag attctctaac cttgagaaat tcttactatc cccgaacttc atttgtgctg
     1801 ccgtaaatcc aacagcatta cccgactgtg ccggtaaagg tgttgcaacc aatacggaac
     1861 aagtgtcaat gttagagcca tcaatttcac ctttgaattt tttggctccc aaaaaagttg
     1921 caggataagt tacagtttga gtttgattaa acattttgat ttcctttaaa aataatcata
     1981 atctacattt tgatgataaa ctttacttaa atattcctga tatttccttt ctttctcgac
     2041 atcataatca ggactaaaaa gccttttttc cctatcgaat ttgtcagaat ttttaaaagc
     2101 aataaccccc aattcatcaa gttcaatttc caaatcaata tccggctgtt catgaataaa
     2161 accgtgtttc aaaccgtccc ttaacatttc cagagcatat ttttcaggtt ctaatccttt
     2221 gggaaatccc gaatctgcct ttaaagattc cacaatttcg ctattatcaa aacccatttc
     2281 aatcatgaaa ttgaccagtt ttccaaccgc gtttttcgcg taatgcaatt tatgctcgaa
     2341 agttaaatta agcgttttct ttctctgatc aaacctttcg ggaaccggca tatttttaaa
     2401 ttttctacaa attggaaaag ctccacagaa atacgaaccc tgatttatta aaatatccaa
     2461 gggtatttct atatctccat aattaaactg gatctcgaac cttacccatt tgctttcttt
     2521 atctccaagc tgcctgcctt tctcataaac acgaacaaaa cgagaatttt tcttgcgacc
     2581 tacataaaat gtcttgccgc tcccgtcctc attccgccaa gccgtaccga tcgtttcaga
     2641 tttcggcctt tgattgctgt tatcaaaaaa accattatcg tgatctaaca acgcctgatc
     2701 cggcgtgtac tctccatcaa aaaaatcaag tgctaggtca attcgcgtta ttcttgtcct
     2761 tatcgaatca tcgagaaact gctttagcct caactcccaa cccggacttg caacgctgca
     2821 accagtacct ttcaactcaa ctaaaacagt attgcgctga cctccgaaat gcacctctcc
     2881 ataatcaaca tcatccgaac ctaacctata catggattca tagaatttgt tgccccttga
     2941 tttgcatttg cgcgttatgc caaaacctag aatttcttcc agctttctgc ttaatacata
     3001 catgtattca gcatcagaaa ataaagggca accggaaact ttcagtaaag tatcttcatg
     3061 gaatgtgaat gaaatccaat caacaaaaac cccgtcttgc ttacctcttc gctgcggaat
     3121 ttctaaaagc ttcccttttc cgtccgatat aaagtgtgag aaatattcaa cttcactcat
     3181 tcgttcacta ctcttggaat tggtttttaa tttcgctccc cccctgttag tcaagggggg
     3241 gctttcagcc gtttcccgtc ttccgcgcta aagcgcgtac gacggtcaac gaccgaaagc
     3301 caaatcctga caaactttta aagatcaaca aaaaagacca caaccatccg ttgtgataat
     3361 cactggaaaa ttcgaaccaa ccgaatctat ataatcgaac gcctgataaa gctttgaaaa
     3421 attctcttga ttaatgagtt tatgcggttc gccatgtctg aactgataaa aacacaaaac
     3481 acaagaatct gattttttaa atattctcca ataagaacag gaaaatatta catttactgc
     3541 tgacataaaa aagccccttt cacttggctg tcaaagggga atgttaagaa aattaatgcg
     3601 cccctttgat agagcgcatc atataaggcg ggaatctaga ccgttcggtt tcggtttttt
     3661 tggttagtgc cgcaacatta aatt
//
LOCUS       DAXHNP010000176         3681 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.176, whole genome shotgun sequence.
ACCESSION   DAXHNP010000176 DAXHNP010000000
VERSION     DAXHNP010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.176"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..448)
                     /gene="mafA"
                     /locus_tag="ACFM5C_001898"
     CDS             complement(<1..448)
                     /gene="mafA"
                     /locus_tag="ACFM5C_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6069547.1"
                     /translation="MKTLLLLIPLVLTACGTLTGIPAHGGGKRFAVEQELVAASSRAA
                     VKEMDLSALKGRKAALYVSVMGDQGSGNISGGRYSIDALIRGGYHNNPESATQYSYPA
                     YDTTATTKSDALSSVTTSTSLLNAPAAALTKNSGRKGERSAGLSVNG"
     gene            complement(568..1668)
                     /locus_tag="ACFM5C_001899"
     CDS             complement(568..1668)
                     /locus_tag="ACFM5C_001899"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HFC6069548.1"
                     /translation="METQLYIGIMSGTSMDGADAVLIRMDGGKWLGAEGHAFTPYPGR
                     LRRKLLDLQDTGTDELHRSRMLSQELSRLYAQTAAELLCSQNLAPSDITALGCHGQTV
                     RHAPEHGYSIQLADLPLLAERTRIFTVGDFRSRDLAAGGQGAPLVPAFHKALFRDDKE
                     TRVVLNIGGIANISVLPSDAPAFGFDTGPGNMLMDAWTQAHWQLPYDKNGAKAAQGNI
                     LPQLLDRLLAHPYFAQPHPKSTGRELFALNWLETYLGGGENRYDVLRTLSRFTAQTVF
                     DAVSHAAANARQMHICGGGIRNPVLMADLAECFGTRVSLRSTAELNLDPQWVEAAAFA
                     WMAACWVNRIPGSPHKATGASKPCILGAGYYY"
     gene            1993..3567
                     /locus_tag="ACFM5C_001900"
     CDS             1993..3567
                     /locus_tag="ACFM5C_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFC6069549.1"
                     /translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
                     IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
                     TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
                     VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
                     TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
                     GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
                     FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
                     AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
                     TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNANWKLMKPIGLAWVITLPA
                     AAVLSVVCYLVLQAVF"
BASE COUNT          727 a          895 c         1129 g          930 t
ORIGIN      
        1 tgccgttgac ggacagtccg gcggagcgtt cgcctttgcg tccgctgttt ttcgtcaggg
       61 cggcggcggg ggcgttcaaa agcgatgtgg aagtggttac gctggagaga gcgtcggatt
      121 tggtggtggc ggtagtgtcg taggcggggt agctgtattg ggtggcactt tcggggttgt
      181 tgtggtagcc gccgcgtatc agtgcgtcga tagagtagcg tccgccgctt atgttgcccg
      241 aaccttggtc gcccataacg gagacgtaaa gggcggcttt gcgtcctttc agggcggaca
      301 agtccatttc tttgacggcg gcgcgggacg atgcggcgac gagttcttgt tcgacggcaa
      361 agcgtttgcc gccgccgtgg gcgggtatgc cggtcagtgt gccgcaggcg gttaggacga
      421 gggggatgag gaggagcagg gttttcatag cggggtttgt ttgatgttga acggattttg
      481 agtgtaaatg gattttaagg gtttgtaaac aaaaggggcg aaaatgccgt ctgagcggcg
      541 gaaatggctt tcagacggta tttgcgctca ataataatat cccgcgccca gaatacacgg
      601 tttggatgcg ccggttgctt tgtgcggact accgggaatg cggttgaccc aacacgccgc
      661 catccatgcg aacgcggcgg cttctaccca ttgcggatcg aggttcagtt cggcggtgct
      721 gcgtagggaa acgcgtgtgc cgaagcattc tgccaaatct gccattaaaa caggattgcg
      781 gatgccgccg ccgcaaatgt gcatttgacg ggcatttgcc gctgcatgtg agacggcgtc
      841 gaaaacggtt tgcgcggtga atcgggaaag tgtccgtaat acgtcgtatc ggttttcgcc
      901 gccgccaagg taggtttcga gccaatttag ggcaaacagt tcgcgccccg tgcttttggg
      961 gtggggttgt gcgaaatacg ggtgggcgag cagcctgtcg agcagttgcg gcaatatgtt
     1021 gccttgtgcc gcctttgcac cgtttttgtc gtaaggaagc tgccagtgtg cctgcgtcca
     1081 cgcgtccatc agcatattgc ccggccctgt gtcgaagccg aaggcgggtg cgtcggaggg
     1141 gagtacgctg atgttggcaa tcccgccgat gttcagtacc acgcgtgttt ctttgtcatc
     1201 gcggaacagg gctttgtgaa aggcggggac gagcggcgca ccttgtccgc cggccgcaag
     1261 gtcgcggctg cggaagtcgc cgacggtaaa aatccgcgtc cgttctgcca gcagcggcaa
     1321 atcggcaagc tgtatgctgt aaccgtgttc cggcgcgtgt cggacggttt gcccgtggca
     1381 gccgagggcg gtaatgtcgg acggcgcgag gttttgactg cacagcagtt cggcggcggt
     1441 ttgcgcgtac aggcggctga gttcttgcga caacatcctg ctgcggtgca gttcgtctgt
     1501 gcctgtgtcc tgcaaatcca gcaatttgcg gcgtaacctg ccggggtagg gggtaaaggc
     1561 gtgcccttcc gcgcccagcc atttgccgcc gtccatccgt atcagtacgg catccgcccc
     1621 gtccatgctg gttcccgaca tgatgccgat gtaaagctgt gtttccatca tcactcccaa
     1681 actggtgcaa aacgccattt taacgtgtat tgacgctcgt ataccgattt gccgccgcag
     1741 tgtaaataaa gtgtaaataa atgtttcaag acggatggaa aaatattata atgcgcccgc
     1801 aacatccagt agtagaagtg tcatacaaac cgtttccggc agcagttttg cattcggtca
     1861 ggtttggggg tattcggatg cggttcagaa ggaaggatgc gtctgccata tcccgaaacg
     1921 gcagttcgac cggaggcagc agtacagtgt cggcaacact catgatttcc accacattaa
     1981 aggaagattg ccatggctca aatccaaatg agcgcaaatg ttaaaaccat caacgccgtc
     2041 tttgccgcca tgctggtagg tacagtcggc tattttattt attggggctt gggttatacc
     2101 cattacaatt acgccgcctt attcattatt gccacgatgt tcggcgtgtt tatggcgttc
     2161 aacatcggcg gcaacgatgt tgccaattct ttcggcacca gcgtcggtgc gggtacgctg
     2221 accatcccgc aggctttgct gattgcggcg gtatttgagg tcagcggcgc ggtcatcgcg
     2281 ggcggtgagg taaccaatac catacgcaaa ggcatcgtcg atttgaaggg tgttgatttc
     2341 gaacccatac agtttgtgtt tattatgatg tccgcgcttt tggcggcggc gttgtggctg
     2401 ttgtttgcct cgaaaaaagg gcttccggta tctaccaccc attccattat cggcggcatt
     2461 gtcggcagcg cggtatgtat ggcggtaatg aacgatgccg catcgggcga tttgatacgt
     2521 tggggcaagc tgggcggtat tggtgtttct tgggtattgt cgcccgtgtt gggcggcgcg
     2581 gtgtcctatt tcctgttttc gcgcgtcaag aaaaacgtct tagattacaa cgcttgggcg
     2641 gaaggcacgc tcaagggcat caagcaggaa aaaaaggcct ataaagaacg gcaccgcctg
     2701 tttttcgagg gtttgtccga agccgaaaaa gtcgagtacg ccaccaaaat ggcgcacgac
     2761 gcgcaaattt acgacgaacc cgaattcgat ccgcaagagc tgcaatcgga gtattaccgc
     2821 ggtctttatg cgttcgacaa ccgtaaaaac aatgtcgatt cctacaaagc gctgcattct
     2881 tggattccct ttatcgcttc gttcggcgcg atgatgattt ccgctatgct gattttcaag
     2941 ggcttgaaaa acctgcattt ggggatgagc aacgtcaaca gcttcctgac catctttatg
     3001 ataggcgcgg cggtgtggat ggggacgttt gtttttgcca aaagcctcaa gcgtaaagac
     3061 ttgggcaaat cgacctttca gatgttttca tggatgcagg tctttaccgc ctgcggcttc
     3121 gcattcagcc acggggcgaa cgatatcgcc aacgccatcg gtccgtttgc cgcgattatg
     3181 gatgttttgc gtaccaacag cgttgccgcg caaaatgtcg tccccccgat tgcgatgctg
     3241 actttcggta tcgcgctgat tgtcggtttg tggtttgtcg gtaaagaggt gattaaaacc
     3301 gtcggtacga gtttggcgga aatgcacccc gcctcgggtt ttactgccga actgtccgcc
     3361 gcatctgtcg tgatgggcgc gtcgctgatg gggctgcccg tgtccagtac gcatatcttg
     3421 gtcggcgcgg tactcggtat cggtctggtc aaccgtaatg ccaattggaa actgatgaag
     3481 cccatcggtt tggcgtgggt cattaccctg cctgccgccg ccgtattgtc ggttgtctgc
     3541 tacttggttt tacaggcagt attctgattg taaaatactg atgccgtctg aacccgtgtt
     3601 cagacggcat tttgttgatg gaatgtgcgg gcttgtgcct tatgcgcaat ctgttctgtc
     3661 gggatatgcc gtttggtata g
//
LOCUS       DAXHNP010000177         3615 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.177, whole genome shotgun sequence.
ACCESSION   DAXHNP010000177 DAXHNP010000000
VERSION     DAXHNP010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.177"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            133..491
                     /locus_tag="ACFM5C_001901"
                     /pseudo
     CDS             133..491
                     /locus_tag="ACFM5C_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245152.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            522..3374
                     /gene="gcvP"
                     /locus_tag="ACFM5C_001902"
     CDS             522..3374
                     /gene="gcvP"
                     /locus_tag="ACFM5C_001902"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HFC6069550.1"
                     /translation="MKLSELFNPDEFAARHLSFGDEAALLAAVGEKSMDDFVGNTVPQ
                     SIRMPSELDLPDALTEADALAKLKGIASKNVINKSYIGLGYYPTRVPNVTLRNVLENP
                     GWYTAYTPYQAEIAQGRLEALLNFQQVCIDLTGFPVAGASLLDEATAAAEAMAMAHRV
                     GKVKSERFFVDARVYPQTLDVMKTRAKYFGFELVVGDFAQAEEGEYFGALFQYVGKDG
                     DVQDLQDVIGRLKAKGTIVAVAADIMSLVLLKSPAELGADIALGNTQRFGVPMGFGGP
                     HAAYFAFKDEFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQAL
                     LANLAGMYAVYHGPEGVKRIANRIHALASAFADALVSDGLNVVHKVFFDTVTVDFGNK
                     EKADQVFAAALESGYNLRRVNDTQVAAAFHETSACEDLVDLYRAFTGKDAFAFADDVK
                     GRLNAELLRQDDILQHPVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNA
                     TAEMLPITWAEFSDIHPYAPEAQTVGYRELLADMENSLKAITGFDAISFQPNSGAQGE
                     YSGMLAIRRYQEAQGEAQRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDD
                     LKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIIHENGGQVYMDGANLNAQIGIM
                     QPAEVGADVLHMNLHKTFCIPHGGGGPGMGPIGLKAHLAPFAPGHVVTDMHNASADQT
                     AVAAAAFGSASILPITWMYLTMMGKQGMEQATRWALLNANYVAKRLSEDYPILYTGKN
                     GRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKA
                     ELDRFIAALKQIKQEVLKVERGEWPKEDNPLVNAPHTASDVTGEWTHPYSREEAVFPL
                     PFVREHKFWPSVNRVDDVYGDRNLVCSCPPMENYED"
BASE COUNT          850 a         1040 c          937 g          788 t
ORIGIN      
        1 tgaaccgact ggaacaccaa actgcttcgg gacgcatatg ccgtctgaag tgcaaaacct
       61 acgccataca gccgcatgaa gttgcagcgg tatggcgttt tttgaaaaag acggcctgcc
      121 ggttcagacg gcatgaccga ccgtccgagc ctgctgtgga taaagcccgg acaggctgaa
      181 atcatggaat attgcgaacc tgaagaagca tccgacccgt acgcaacata caggcgtgcc
      241 aacctgatgg cgaggctgcc gctgtttgtc gtgattttgg ttctgctcaa tattgttttc
      301 cgcttccggc gcatccctta gcttggctgg tgcctgcagg tttcatggtt ttggtcggcg
      361 gctttccctt atcgctgccg cttgtggcgc tgcttgtcct gacctgctgc attctggcgc
      421 attgtccgcc attatcccgt cttttgtgct acccttgccc gaatcatccg atgtctaaaa
      481 attctgcctg atggcagccc tacaaacccg aaggagtaga aatgaaactg tccgaactgt
      541 tcaaccccga cgaatttgcc gcgcggcatt tgagtttcgg cgacgaagcg gcgttgcttg
      601 ccgctgtcgg cgagaaaagt atggacgatt ttgtcggcaa caccgtgccg caaagcatcc
      661 gtatgccgtc cgaactcgat ttgcccgatg ccctgaccga agcggacgcg ttggcaaaat
      721 tgaaaggcat tgcgtcgaaa aacgtgatca acaagtccta tatcggttta ggctattacc
      781 cgacccgcgt gccgaatgtg actttgcgca acgtattgga aaatccgggc tggtataccg
      841 cctacacgcc gtatcaggcg gaaatcgcgc agggtcgttt ggaagcattg ttgaacttcc
      901 aacaagtgtg catcgatttg accggttttc ccgtggcggg cgcgtctttg ctggacgagg
      961 caactgccgc ggctgaagcg atggcgatgg cgcaccgagt gggcaaagtg aaatccgaac
     1021 gtttctttgt ggatgcgcgc gtgtatccgc aaactttgga cgtgatgaaa acccgcgcca
     1081 aatatttcgg ctttgaattg gtggtcggtg attttgccca agcggaggaa ggcgaatact
     1141 tcggtgcgct gttccaatac gtcggcaaag acggcgatgt gcaagacttg caggacgtta
     1201 tcggccgtct gaaagccaaa ggcacaatcg ttgccgttgc agccgacatt atgagcttgg
     1261 ttttgctgaa gtctccggct gaactaggtg cggatattgc tttgggcaac acgcaacgct
     1321 tcggcgtgcc tatgggcttt ggtggtccgc acgccgctta tttcgcgttt aaagacgagt
     1381 tcaaacgttc cgccccgggc cgcatcatcg gcgtatccaa agacgcatca ggcaaacctg
     1441 ccttgcgcat ggcgttgtcc acccgcgagc aacacatccg ccgcgaaaaa gcgacatcca
     1501 atatttgtac cgcgcaggca ttgctggcga acttggcggg tatgtacgcc gtttaccacg
     1561 gccctgaagg tgtgaaacgc atcgccaacc gcattcacgc gctggcttct gcctttgccg
     1621 atgcgctggt ttcagacggc ctgaatgtgg ttcataaggt cttcttcgat accgttaccg
     1681 tcgatttcgg caacaaagag aaagcagacc aagtgtttgc cgctgctttg gaatcgggct
     1741 ataacctgcg ccgcgttaac gatactcaag ttgcggctgc attccacgaa acatcggcat
     1801 gcgaagattt ggttgatttg taccgcgcgt ttaccggcaa ggatgcgttc gcatttgccg
     1861 atgatgtcaa aggccgtctg aacgccgaat tgctgcgtca agatgacatt ctgcaacatc
     1921 ctgtgttcaa ccgttaccac accgaacacg aaatgttgcg ctatctgaaa aaactcgaag
     1981 accgcgattt ggcgatgaac cgcagcatga tttcgctcgg tagctgcacc atgaaactca
     2041 acgcgactgc ggaaatgctg ccgattactt gggcggagtt ctccgacatc cacccttacg
     2101 ctcccgaagc gcaaaccgtc ggctaccgcg aattgcttgc cgatatggaa aacagcctga
     2161 aagccatcac cggctttgac gcaatttcct tccagcccaa ctccggcgcg cagggcgaat
     2221 acagcggtat gcttgccatc cgccgctatc aggaagcgca aggcgaagcg cagcgcaaca
     2281 tctgcctgat tcccaaatcc gcccacggca ccaaccccgc caccgccgcc atgctcggtt
     2341 tgaaagtcgt cgtcgtcgat accgacgaac acggcaacgt caacatcgac gatttgaaag
     2401 ccaaagccga gcaacaccgc gacgctttgt ccgccatcat gattacctat ccgtccaccc
     2461 acggcgtgta cgaagaaggc atccgcgaca tctgccgcat catccatgaa aacggcggac
     2521 aggtttatat ggacggcgcc aacctcaacg ctcaaatcgg catcatgcag cctgccgaag
     2581 tcggcgcgga cgtgttgcac atgaacctgc acaaaacctt ctgtatccct cacggcggcg
     2641 gcggcccggg catgggtccg attggcttga aagcccatct ggctccgttc gcaccaggcc
     2701 atgtggtaac cgatatgcac aacgccagtg ccgatcaaac tgccgtggct gccgcagctt
     2761 tcggttctgc gtccatcctg ccgattactt ggatgtacct gaccatgatg ggcaaacaag
     2821 gcatggagca ggcaacacgc tgggcattgc tcaacgccaa ctacgttgcc aaacgcttga
     2881 gcgaagacta tccgattctg tatacaggca aaaacggccg cgtcgcgcac gaatgtatcg
     2941 tcgacttgcg tccgctcaaa gccgaaagcg gcattaccga aaccgacatc gccaaacgcc
     3001 tgatggacta cggcttccac gccccgaccg tctccttccc cgttgccggc acgctgatga
     3061 tcgagccgac cgaaagcgag agcaaagccg aactcgaccg cttcatcgcc gccctgaaac
     3121 aaatcaaaca ggaagtgttg aaagtcgagc gcggcgaatg gccgaaagag gacaacccgt
     3181 tggtgaacgc tccgcatacc gcatccgacg taactggcga atggacgcat ccgtattccc
     3241 gcgaagaagc cgtcttccca ttgccgttcg tccgcgaaca caaattctgg ccgagcgtca
     3301 accgtgtgga cgacgtgtac ggcgaccgca atctcgtgtg cagctgccca ccgatggaaa
     3361 attatgaaga ctgaccgttg aaaccccgaa gacaaatgcc gtctgaaaca ctttcagacg
     3421 gcattttcgt cgacggcaga ctggttgcac caatacacgt atctcgacta taactttaaa
     3481 acaaatgagt taaaccagta tccatacatc agctttttta tcatcctact ttttattcat
     3541 ccgatcgtgc aaacagattt caaagatgaa aagcctattc acaccctttg atgtcatttc
     3601 cacacggaca aacaa
//
LOCUS       DAXHNP010000178         3523 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.178, whole genome shotgun sequence.
ACCESSION   DAXHNP010000178 DAXHNP010000000
VERSION     DAXHNP010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.178"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            186..1061
                     /gene="dapA"
                     /locus_tag="ACFM5C_001903"
     CDS             186..1061
                     /gene="dapA"
                     /locus_tag="ACFM5C_001903"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFC6069551.1"
                     /translation="MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGT
                     TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADFTLS
                     VVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGV
                     KEASGNIGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMC
                     RAALQGDIALARKLNDRLIPIYDTMFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTEG
                     GQAKVRAALKASGQL"
     gene            1070..2266
                     /gene="bamC"
                     /locus_tag="ACFM5C_001904"
     CDS             1070..2266
                     /gene="bamC"
                     /locus_tag="ACFM5C_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HFC6069552.1"
                     /translation="MPSEPFGRHNATNTLISITQDDTMTLIKPVIAALALIGLAACSG
                     SKTEQPKLDYQSRSHRLIKLEVPPDLNNPDQGSLYRLPAGSGAVRASDLEKRRTPAVQ
                     QPADAEVLKSVKGVRLERDGSQRWLVVDGKSPAEIWPLLKAFWQENGFDIKSEEPAIG
                     QMETEWAENRAKIPQDSLRRLFDTVGLGGIYSTGERDKFIVRIEQGKNGVSDIFFAHK
                     AMKEVYGGKDKDTTVWQPSPSDPNLEAAFLTRFMQYLGVDGQQAENASAKNPTLPAAN
                     EMARIEGKSLIVFGDYGRNWRRTALALDRIGLTVVGQNTERHAFLVQKAPNESNAVTE
                     QKPGLFKRLLGKGKAEKPAEQPELIVYAEPVSNGSRIVLLNKDGSAYAGKDASALLGK
                     LHSELR"
     gene            complement(2323..3255)
                     /gene="pip"
                     /locus_tag="ACFM5C_001905"
     CDS             complement(2323..3255)
                     /gene="pip"
                     /locus_tag="ACFM5C_001905"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HFC6069553.1"
                     /translation="MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAG
                     ASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIRKWL
                     VFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETAWLNEAGGVSRIYPEQWQKF
                     VAPIAENRRNRLIEAYHGLLFHQDEEVCLSAAKAWADWESYLIRFEPEEVDEDAYASL
                     AIARLENHYFVNGGWLQGDRAILNNIGKIRNIPTIIVQGRYDLCTPMQSAWALSKAFP
                     EAELRVVQAGHRAFDPPLADALVQAVEDILPRLL"
BASE COUNT          930 a         1158 c          787 g          648 t
ORIGIN      
        1 cgacggcacc ggcataaacc ggcgaatata ataaaatgat ttcaaacagg aaaaatcaat
       61 ttccaccata cctttcggcg caaacgcccc acatctgcaa cccgccggat ttcacacctg
      121 cggtaaagta ggctacaatc agaagcatta ccgcccccta caccacaact gataaaaggt
      181 tctgtatgtt acaaggtagc ctggttgccc tgattacccc gatgaatcaa gacggcagca
      241 tccattacga acaactccgc gatttgatcg actggcacat tgaaaacggc acggacggca
      301 tcgttgccgt cggcacgaca ggcgaatccg ccaccctctc cgtcgaagaa cacaccgccg
      361 tcatcgaagc cgtcgtcaaa cacgttgcca aacgcgtccc cgtcatcgcc ggcacagggg
      421 caaacaacac cgtcgaagcc atcgcccttt cccaagccgc cgaaaaagcc ggtgcagact
      481 tcactctctc cgtcgtcccc tattacaaca agccctccca agaaggcatt taccaacatt
      541 tcaaaaccat cgccgaagcc acttcgattc cgatgattat ctacaacgtg cccggccgta
      601 ccgtcgtcag catgactaac gacactatcc tgcgccttgc cgaaatcccc aacatcgtcg
      661 gcgtgaaaga agccagcggc aacatcggca gcaacatcga actcatcaac cgcgcgcccg
      721 aaggcttcgt cgtcctttcc ggcgacgacc ataccgccct gccgttcatg ctgtgcggcg
      781 gacacggcgt gattaccgta gccgccaacg ccgcacccaa gctctttgcc gatatgtgcc
      841 gcgccgcgct gcaaggcgac attgccctcg cacgcaagct caatgaccgg ctgattccga
      901 tttacgacac catgttctgc gaacccagcc ccgccgcacc gaaatgggcg gtatccgccc
      961 tgggcagatg cgaaccgcac gtccgcctgc cgctcgttcc gctgacggaa ggcggacagg
     1021 caaaagtccg cgccgccctg aaagcctcag gacaactcta aatataacta tgccgtctga
     1081 accgttcgga cggcataacg caacaaacac tttaatatcc atcacacagg atgacacgat
     1141 gacccttatc aaacccgtca ttgccgcgct cgcactcatc gggcttgccg cctgctccgg
     1201 cagcaaaacc gaacagccca agctcgacta ccaaagccgg tcgcaccgcc tgatcaaact
     1261 tgaagtccca cccgatttga acaaccccga ccaaggcagc ctctaccgcc tgcctgccgg
     1321 ttcgggagcc gtccgcgcca gcgatttgga aaaacgccgc acacccgccg tccaacagcc
     1381 tgccgatgcc gaagtattga aaagcgtcaa aggtgtccgc ctcgagcgcg acggcagcca
     1441 acgttggctt gtcgttgacg gcaaatcccc tgccgaaatc tggccgcttc tgaaagcctt
     1501 ttggcaggaa aacggcttcg acatcaaatc cgaagaaccc gccatcggac aaatggaaac
     1561 cgagtgggcg gaaaaccgtg ccaaaatccc ccaagacagc ttgcgccgcc tattcgacac
     1621 agtcggtttg ggcggcatct actccaccgg cgagcgcgac aaattcatcg tccgtatcga
     1681 acagggcaaa aacggcgttt ccgacatctt cttcgcccac aaagccatga aagaagtgta
     1741 cggcggcaaa gacaaagaca cgaccgtatg gcagccctcc ccgtccgatc ccaacctcga
     1801 agccgctttc ctgacgcgct ttatgcaata tttgggcgtt gacggacagc aggcggaaaa
     1861 cgcatcggca aaaaacccga ccctgcccgc cgccaacgaa atggcgcgta tcgaaggcaa
     1921 aagcctgatt gtctttggcg actacggcag aaactggcgg cgcaccgcgc tcgccctcga
     1981 ccgcatcggg ctgaccgtcg tcggtcaaaa caccgaacgc cacgctttcc tggttcaaaa
     2041 agccccgaac gaaagcaatg cagttaccga acaaaaaccc ggcctgttca aacgcctgct
     2101 gggcaaaggc aaagcggaga aacctgccga acagccggaa ctgattgtct atgccgagcc
     2161 tgtctccaac ggctcgcgca tcgtcctgct caacaaagac ggcagcgcat atgccggcaa
     2221 agacgcatcc gcattattgg gcaaactcca ttccgaactg cgttaaacca ttcaaaacaa
     2281 aagcagcttc caaacagaag ctgctttttt atgcggaact ttttacaaca aacggggcaa
     2341 aatatcctca accgcctgaa ccagcgcatc cgccaaaggc ggatcgaacg cacgatgccc
     2401 tgcctgaacc accctcaatt ccgcttccgg aaaggctttc gacagcgccc acgcactctg
     2461 catcggcgta cacaaatcat accgcccctg cacgataatg gtcgggatat tccgtatttt
     2521 gccgatattg ttcaaaatcg ccctatcgcc ctgcaaccag ccgccgttga caaaataatg
     2581 gttttccaaa cgcgcgattg ccagcgaggc ataagcatct tcatccactt cctccggctc
     2641 gaaacggatc agatagcttt cccaatccgc ccaagccttt gcggcagaca ggcacacttc
     2701 ttcatcttga tgaaacagca acccgtgata cgcctcaatc agccggttcc gtcgattttc
     2761 agcaatcggc gcgacaaatt tttgccattg ttccggataa atccggctca caccgcccgc
     2821 ctcgttcagc cacgccgttt cagacggcct gcacaaaaat atcccgcgca ataccaatcc
     2881 ctttacccgt tcaggatggg tttgggcata agccagcgac aaagtgctgc cccacgaacc
     2941 gccgaacacc agccatttcc tgatacccag catttcacgg actttttcaa tatccgccac
     3001 caaatcccaa gtcgtattgt cttccgcaca agcatacggg cgcgaacgtc cgcaaccgcg
     3061 ctggtcgatg atgacgatgc ggaacacatc gggattgaaa aaaccccgac attcaggcga
     3121 agcccccgcg cccggcccgc catgtaaaaa aataaccggc acaccgtcgg gattgcccga
     3181 ttcctcccaa taaatttgat gaatttcaga cacctgcaag tatccgctat gaaaaggctg
     3241 ttttatctca tacatcatct tctcccatat tgcttctgac aatccgaaca ttcccacacg
     3301 caacatcacg cacgagacac aagccgcccc gaaaggcaaa tgccgaaaaa tcgcgatata
     3361 gtgaattaac aaaaatcagg acaaggcggc gagccgcaga cagtacggat agtacggaac
     3421 cgattcactc gtgcttaagc accttagaga atcattctct ttgagctaag gcgaggcaac
     3481 gccgtaccgg tttttgttaa tccactataa cagcaaccct gtc
//
LOCUS       DAXHNP010000179         3478 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.179, whole genome shotgun sequence.
ACCESSION   DAXHNP010000179 DAXHNP010000000
VERSION     DAXHNP010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.179"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            171..680
                     /locus_tag="ACFM5C_001906"
     CDS             171..680
                     /locus_tag="ACFM5C_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069554.1"
                     /translation="MDILLKYWKPVGVLLLIVLIFTAWHFDRAEKYRMGREAAAAEIS
                     NRLKDGYIEQAKQARSAEQKAAAAFAERQTKLEEEKQNAEKTVAAMRLELNRLRHYAA
                     AQNRSRNLPATTTAATASDGASDSQGWLLFGQCAEKYAGLAETADGHAADLREWQAYG
                     HAVSSQRAE"
     gene            complement(733..1080)
                     /locus_tag="ACFM5C_001907"
     CDS             complement(733..1080)
                     /locus_tag="ACFM5C_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6069555.1"
                     /translation="MYIPDKGDIFHLNFDPSGGKEIKGGRFALALSPKAFNRATGLVF
                     ACPISQGNAAAARSGGMISTLLGAGTETQGNVHCHQLKSLDWQIRKASFKETVPDYVL
                     DDVLARIGAVLFD"
     gene            complement(1082..1318)
                     /locus_tag="ACFM5C_001908"
     CDS             complement(1082..1318)
                     /locus_tag="ACFM5C_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HFC6069556.1"
                     /translation="MLRVQKWGNSAAVRLPADMLKQLDFKIGDALVAEVHNGELRVRA
                     ARRFRLADLLAEMEETPPRVEGWEILDDVGNEVV"
     gene            complement(1677..2168)
                     /locus_tag="ACFM5C_001909"
     CDS             complement(1677..2168)
                     /locus_tag="ACFM5C_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6069557.1"
                     /translation="MFWQLTVVSVTAVIALGTIFINKKTSKQKATLDVILNDYQDAQF
                     VEADNHISPYIRGTAVDDNNARIDLYEIYQNKGGQWEKERGHLLTVINRHEFYACEIN
                     SGVLDEDLFKRLHCTNFIKLWNAVSPLVMKIREEERKDTIFRELEILVALWKANPLKA
                     SDL"
     gene            complement(2420..2590)
                     /locus_tag="ACFM5C_001910"
     CDS             complement(2420..2590)
                     /locus_tag="ACFM5C_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069558.1"
                     /translation="MPSEIQTAFLLKGFSSTALHKGGFFMPSESPSDGIGLHGRSSPA
                     FKQERMSRMPDF"
     gene            complement(2606..2974)
                     /locus_tag="ACFM5C_001911"
     CDS             complement(2606..2974)
                     /locus_tag="ACFM5C_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HFC6069559.1"
                     /translation="MIDGELVALIHQTVLADEAGLKGRADMARLDGALSRIANWRQYE
                     NLEDIYEIAALYAQAIAKAHAFPDGNKRTALLTMLTYLDLQGISIAADQGLDDLIVSL
                     AAGETDFKQLAETLRRLDKE"
     gene            complement(2971..3102)
                     /locus_tag="ACFM5C_001912"
     CDS             complement(2971..3102)
                     /locus_tag="ACFM5C_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069560.1"
                     /translation="MQNQNTRPVKIELKGEAGKRVLLAAARRIAKTHQKAVKALADK"
BASE COUNT          889 a          843 c          799 g          947 t
ORIGIN      
        1 gcgctgaaat tcgaccagtt gatactcgaa tttcccgagc gcggggacgg cgcatgggta
       61 cacatcggtt tccgacgcaa cagcccgcaa cgcaaccaga tactgaccgc aaccaagaaa
      121 aacggcaaaa ccgtgtatct gcccgggctg catccttgag gtcatctgaa atggatattt
      181 tattgaaata ctggaagccg gtaggcgtat tgctgctgat agtcctgatt tttaccgcat
      241 ggcatttcga ccgtgccgaa aaataccgca tgggacggga ggctgctgct gccgaaattt
      301 cgaatcgtct gaaagacggc tatatcgagc aggcaaagca ggcgcgttct gccgagcaga
      361 aggccgctgc cgcgtttgcc gaacgacaaa ccaaattaga agaggaaaaa caaaatgctg
      421 aaaaaactgt tgccgctatg cgtcttgagc ttaaccgcct gcgccactac gccgccgccc
      481 aaaatcgcag cagaaacctg cccgcaacca ctaccgccgc caccgcatct gatggcgcgt
      541 cagattccca aggctggcta ttattcggac agtgcgctga aaaatatgca ggactggcag
      601 aaacagccga cggacatgca gccgatttaa gggaatggca ggcatatggt catgcagtaa
      661 gcagtcagcg tgccgaataa gcaaccgccc gaacctgtaa gaaaagatta caggttcggg
      721 cggtttcagc atttaatcga ataagacggc gccgatgcgc gccagcacat cgtccaatac
      781 ataatcgggt acagtttctt taaaagaagc cttgcggatt tgccagtcca gagatttgag
      841 ctggtggcag tggacattgc cctgcgtttc cgttcctgca ccgagtaagg ttgaaatcat
      901 gccgccgctt cgtgcagccg ctgcattccc ctgtgaaatg gggcaggcaa aaaccaatcc
      961 cgttgcgcgg ttgaatgctt ttggagacag agccagcgca aaccgcccgc ccttgatttc
     1021 cttgccgccg gaagggtcga aattcaaatg gaaaatatcg cctttgtcgg gaatatacat
     1081 ttcagacgac ctcgttgccg acatcatcca agatttccca gccttctacg cgcggcgggg
     1141 tttcttccat ttcggcaagc aagtctgcca agcggaaacg tcgggcagca cgcacacgga
     1201 gttcgccgtt atgtacttcc gctaccaaag cgtcgccgat tttaaaatcc aattgtttca
     1261 gcatgtcggc aggcagtcgg acggccgccg agttccccca tttttggaca cgcaacataa
     1321 tcttcacctt tattgtatct acaaagtaga tacatattac cataaaattt cagttgttca
     1381 aatacttgtg cagaatacgc caaaagccgt ccgaactgtt tcggacggct tttgtactgt
     1441 atttgcgcct tcaggcaata ttttgttatc cattttcaag atgcaaaagc tttctaattg
     1501 cttgatgtcg gatttcggtt gtttagggat acaaaaccaa gtaaactaaa actgtttgat
     1561 tggaaaatgc tccgcaagga gaaaattatg ttcaaaaaat cactttataa ggctgctttg
     1621 gcgtatttcg gcgattgcgt ggctgcccat atttcagaac agttttgact gtttattcac
     1681 aaatcagatg cctttagggg gtttgctttc cataatgcaa ccaaaatttc caactctcta
     1741 aatattgtgt ctttgcgttc ttcttcgcgt attttcataa caagaggcga aactgcattc
     1801 cacaatttta tgaagttggt gcaatgcagc cgtttaaaca aatcctcatc caatactccc
     1861 gagttgattt cgcacgcata aaactcgtgc cgattgatta cggtaagtaa atgccctctc
     1921 tctttttccc attgtccgcc cttattttga taaatttcat acaggtcgat ccgcgcgttg
     1981 ttgtcgtcaa ctgccgtgcc gcgaatataa ggcgaaatat gattgtcggc ttctacaaat
     2041 tgtgcatctt ggtaatcatt caaaataaca tctaatgtcg ccttttgctt tgaagttttc
     2101 ttattgatga atattgtccc cagtgcaatg acggcggtta ctgaaacaac ggtcagttgc
     2161 caaaacatca gccattcggc cgtccctcat aggttaaact gtacgctgtg cctgaatatg
     2221 taaaataaag tgaatacaga tacaaacaag gaggttaggg caattactga caaccaacct
     2281 ccttgtttta tttgtttccg caccttacca gccattaaaa ccctcatttt tgtatttcat
     2341 cgtatttcct taatggttgt aaccttgctt gtcgatatct gtatattaat gccgtgcgcc
     2401 cgttctttca aggggtgatt taaaaatcag gcatccttga catcctctcc tgcttaaagg
     2461 cgggggaact cctgccgtgt aaaccaatgc cgtctgaagg gctttcagac ggcataaaaa
     2521 aaccgccttt gtgtaaagcg gttgaagaaa agcctttcaa taaaaatgcc gtctgaattt
     2581 cagacggcat tgttgtcgga tatgcctatt ccttatccag tcggcgcagg gtttcggcga
     2641 gctgtttgaa gtcggtttcc cccgccgcca aactgacaat caagtcgtca agcccttggt
     2701 cggcggcaat gctgatgccc tgcaaatcca gataggtcaa cattgttaaa agcgcggtgc
     2761 gcttgttgcc gtcgggaaag gcgtgggctt tggctatggc ttgtgcataa agggcggcga
     2821 tttcgtagat gtcctcaagg ttttcatact gccgccagtt ggcaatccgc gacaatgcgc
     2881 cgtcgagccg cgccatatcc gcccgccctt tcaaacccgc ttcatccgcc aatacggttt
     2941 gatggataag cgcgaccagt tcgccgtcta tcatttgtcg gcaagtgcct tgacggcttt
     3001 ttgatgggtt ttggcaatgc ggcgggcggc ggcaagcagt acgcgtttgc ctgcttcgcc
     3061 tttaagctcg attttgacgg ggcgtgtatt ttggttttgc atcgctgctc cttgtctgtt
     3121 tgcgggcatt ttagcttttt tccggcagct tgggaaatgc cgtctgaaaa cacttcagac
     3181 ggcattcttc taatagtgta atgcaatagt tactccaaga tttttgtata tggctgtttt
     3241 tatggtaaat taaattttca caaagaataa atatatttaa atcaataaaa taaaatttag
     3301 tcgaatccca ccgtttccgc cagaaaacaa aaccgccctg attcagggcg gttctttttg
     3361 gcgcgaatct gcacaattac cataaaagaa tcattggatt atgcttattt tccgtaacgc
     3421 cctgcaataa accgcaatcg gcagatgctt tgatcacagt tttatggtaa tttatatg
//
LOCUS       DAXHNP010000180         3477 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.180, whole genome shotgun sequence.
ACCESSION   DAXHNP010000180 DAXHNP010000000
VERSION     DAXHNP010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.180"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(333..743)
                     /locus_tag="ACFM5C_001913"
     CDS             complement(333..743)
                     /locus_tag="ACFM5C_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069561.1"
                     /translation="MKIYNLDNIITSSALSLYKSTWVKLDLISCAKFIIEGTDFTFDW
                     DEGIENWIVFFHKNKVIGYLCAKLPFAILDNEQLKNQLYHKYPHVLTLQIKNIETEKI
                     SLNVNICRLTLCPSFHDEHDTLVCSVQDFYVNTV"
     gene            complement(1331..1714)
                     /locus_tag="ACFM5C_001914"
     CDS             complement(1331..1714)
                     /locus_tag="ACFM5C_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069562.1"
                     /translation="MMTEPHGYPSNNLPVKIINDIIYATQLVEDLVLGKIKIVDFLKS
                     YNNFYYWLGFDELPQSEKIKFLNYLNILSIHKEIQDKTVNRVYTDCFDIDKLHSLGRI
                     TTNECINGIKKIYQKNKLEFDNILK"
     gene            complement(1680..2354)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001915"
                     /pseudo
     CDS             complement(1680..2354)
                     /gene="mafB"
                     /locus_tag="ACFM5C_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
     gene            complement(2438..2740)
                     /gene="imm40"
                     /locus_tag="ACFM5C_001916"
     CDS             complement(2438..2740)
                     /gene="imm40"
                     /locus_tag="ACFM5C_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Imm40 family immunity protein"
                     /protein_id="HFC6069563.1"
                     /translation="MLNEIFEIYSRQGESLIGIGIREAALPVPTAIDILNLFINERIL
                     VLGGDIYIKKDNYFYQTYDNWYYEGSNLFNSINKAMHYLSQIKLENAYVSFVLKFI"
     gene            complement(2756..2989)
                     /locus_tag="ACFM5C_001917"
                     /pseudo
     CDS             complement(2756..2989)
                     /locus_tag="ACFM5C_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503511.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3098..3307)
                     /locus_tag="ACFM5C_001918"
     CDS             complement(3098..3307)
                     /locus_tag="ACFM5C_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069564.1"
                     /translation="MKLIGFEENLVKISLNKDELYIIQAIVGEIYSGVCVDCRDFEII
                     HGVEKNKVLSLDKELKKIYDTWDKC"
BASE COUNT         1019 a          654 c          541 g         1263 t
ORIGIN      
        1 ttgtatccga caaaaatatt tgacgcgtct atcgtttccg aaatgccgct gttgaaaaat
       61 gtcggattcg agaatccgac ctacggttgc tgaacaatgt tttgtagaac ttgctcaaaa
      121 tccatgtttc gccattttcc tttatatata cctaatacag cacgggttac gatttcgttt
      181 aagtcataaa tagccattta cgtcctctgc taattttcag cgagtagatt gggttaccaa
      241 acccaacaaa aaagcagcct gaaaaatttc aggatgcttg ttttatgttt tttatcaatg
      301 aattaggttt taatccagcc tgcgcttgct agttaaacag tatttacata aaaatcttgt
      361 actgaacaaa caagcgtatc atgttcatca tgaaatgatg ggcataacgt taatctacaa
      421 atgtttacat ttaaagatat tttttcagtt tcaatatttt taatttgtaa ggttaataca
      481 tgaggatatt tgtgatatag ctgatttttt aattgttcgt tgtctaatat agcaaaaggt
      541 aattttgcac acaaataacc aataactttg tttttatgaa aaaaaactat ccaattttca
      601 attccttcat cccaatcaaa agtaaaatcc gttccttcta tgataaattt agcacaagat
      661 attaaatcta acttaaccca agtggattta tacagactca atgctgatga agttataata
      721 ttatctaaat tataaatttt cataaatcaa cgttccttac ctggtgttat atgcacaggt
      781 ctaatcccat ctttattcgg ctttctacga taaatgttaa ttatatgtgt cggttttccg
      841 tctgtatagc caactacgtc gttcgttgga acttttgcct tattttgact atcccataaa
      901 ttatgtttat ctgcatatct agcagcatct aatgtagctt tttccgcatc aacatctgat
      961 ttaaataaac ttttgctatc tatcttgtct agactagatg catcaggttt gtgtcgtaaa
     1021 aagcactgtc ctgtaatagg ctcgcggcag caagttgtgc ttccggactt aattttccta
     1081 aatcattaat accttgtaaa gtttgctgcg cagagatgta ggtcggatat ttgtatccga
     1141 caaaaatatt tgacgcatct atcgtttccg aaatgccgct gttggaaaat gtcggattcg
     1201 agaatctgac ctacggctgc tgactatttt cttgtttata taattctaca actgcaaact
     1261 actatcaaat ctttttatct ctggctctac actcagcaag aatattttta ttttacaaaa
     1321 cataggctag ttatttgagt atattgtcaa attctaattt gtttttttga tagatttttt
     1381 ttataccatt aatacattca ttagttgtaa ttctaccaag cgaatgtaat ttatcaatat
     1441 caaaacaatc ggtataaacc ctattcacag ttttatcttg tatttcctta tgaatactta
     1501 atatattgag atagtttaga aattttattt tctcagattg aggtaactca tcaaaaccaa
     1561 gccaataata aaaattgtta tatgatttta aaaaatcaac aatttttatt tttcctaaaa
     1621 ccaaatcttc aactaactgg gttgcataaa taatatcatt tatgatttta acaggtaaat
     1681 tatttgatgg gtaaccatgg ggttccgtca tcatttgtaa ctcctggtac atgtgcgtgt
     1741 cctgtaagtg cgcgtgggtc ttgatgggta tttgcatgat gagcatcatc tattctggct
     1801 ccagtcaagt ttccattact atctcggact tggataaaac gagcatcagg cgaacctgtt
     1861 atataaccgc ctattggtgt tggtattgca tttcctttgc tgtctacata aattgttcct
     1921 gtcggagaaa tagatgtatc aggtttaaca tatggggcag gtaagcctat attgttatca
     1981 gagtgtgtag agtgttgctg cgtacttggt ttcggtggct tatttccccc agccatctcc
     2041 ccatctacag tctgcataag gcgaacagca ggttttttat agccgttatt tttaacccaa
     2101 tcccatttgg tcgggttaag ttctactttt ttacctctcc aaaccgtacc tgcggcttct
     2161 gctacggcaa gggcagtttg ggctgttgca gttatattcg gatgggcatc agcccattgt
     2221 ctggcggaat taatgccgtc ttttaccgca aaagcactgt cctgtaatag gctcgcggca
     2281 gcaagttgtg cttccggact taaatttcct aaattattaa taccttgtag agtctgctgc
     2341 gcggctgtat ctgagccggt cagtgtaggt tggattaaaa cccagcattt tcaacatctt
     2401 gatgttttac tataaatcta ttcttgtgct tcctttgtta gataaatttc aacacaaaag
     2461 atacgtatgc attctctaat tttatttgag ataaataatg cattgctttg ttgatactgt
     2521 taaataaatt acttccctcg taataccaat tatcatatgt ttgataaaaa taattatctt
     2581 tcttgatata aatatctccc cccaatacaa gtattctttc atttataaat aaatttaata
     2641 tatctattgc agtggggacg ggtaatgcgg cttctctaat tccaattcct atcaaagatt
     2701 ccccttgtct cgaataaatt tcaaaaattt catttaacat attaatctct atctactatt
     2761 tttcaggaag ttgttggtta gggacaaata atctatgatt aatttttcca tctgcttctc
     2821 tgatatattc aaaatttcca tcttttcctt tataagatcc agggatataa agtttatgcc
     2881 ttacaatatt atctccgcca actatttgta ttactgttcc attttcagaa aaagcatcta
     2941 ctgattgcgg aaaaccatga taatcaccat tcgatgcttg tcttaatact gcttcatcag
     3001 cacaattagg gttggcattg atgcccactc agttccagcc tgaaaaggat ttttaatata
     3061 cggcaaaagg tgggcaacga gtgcccaccc tacctagcta acatttatcc caagtatcat
     3121 atattttttt aagttcttta tccaaagaaa gaactttatt tttttcaaca ccatgaatta
     3181 tctcaaaatc tctacaatcc acgcatacgc ctgaataaat ttctcctaca attgcttgaa
     3241 taatatacaa ctcatcttta ttgagactaa ttttaactaa attctcttca aaaccaatta
     3301 atttcatgaa taattccttt tactttaatt tgtcatcaaa atactgttta cctatttttg
     3361 gtctaaatgc tgtcccacca tctgggtctt tgggatttct aattacaacc gttccagact
     3421 tatcgtccca atatgcacta cgcccattgg ataatttttt gctttcggaa ggattgg
//
LOCUS       DAXHNP010000181         3473 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.181, whole genome shotgun sequence.
ACCESSION   DAXHNP010000181 DAXHNP010000000
VERSION     DAXHNP010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.181"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            36..704
                     /locus_tag="ACFM5C_001919"
     CDS             36..704
                     /locus_tag="ACFM5C_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HFC6069565.1"
                     /translation="MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASH
                     AERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPNNKCDFGKKGQGMLAFGDKNGNK
                     TYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTN
                     DQHLTSQSSFSYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTV
                     CQYK"
     gene            734..1354
                     /gene="pilV"
                     /locus_tag="ACFM5C_001920"
     CDS             734..1354
                     /gene="pilV"
                     /locus_tag="ACFM5C_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HFC6069566.1"
                     /translation="MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVA
                     SVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNNTLSHTLSAVDGEFA
                     IDAIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTFSGNAFSSNCDN
                     KANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE"
     gene            1351..2337
                     /locus_tag="ACFM5C_001921"
     CDS             1351..2337
                     /locus_tag="ACFM5C_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HFC6069567.1"
                     /translation="MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFT
                     SRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFGCFNMSEHPATDVVSDVAQKNRS
                     FSLKRNGIDKLIPIAESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
                     PGKKISTLQEAKSELQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQ
                     WGNPQLLVKKINKMDIRYIYLLVENPGIPPTNSPRYIYGCPEDDDAGKEEKFKYTGTF
                     DSSANAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL"
     gene            2316..2909
                     /locus_tag="ACFM5C_001922"
     CDS             2316..2909
                     /locus_tag="ACFM5C_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX N-terminal domain-containing pilus assembly
                     protein"
                     /protein_id="HFC6069568.1"
                     /translation="MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNT
                     EQRISANESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGKGLCTAVNVRT
                     NNDNEEAFDNIVVQGKPTVEAVKRFCSANSTDLCIDNKGTQYKKGTRSVSKMPRYIIE
                     YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE"
     gene            2914..3387
                     /locus_tag="ACFM5C_001923"
     CDS             2914..3387
                     /locus_tag="ACFM5C_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX family type IV pilin"
                     /protein_id="HFC6069569.1"
                     /translation="MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTE
                     MVGINNISKQFILKNPLDDNQNIKSKLERFVSGYKMNPKIAEKYNVSVRFVNQEKPRA
                     YSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK"
BASE COUNT         1000 a          694 c          867 g          912 t
ORIGIN      
        1 aatttaatcc acgatacatt accagttaac gtcctatgtg tacacgaaaa caacaaggtt
       61 tcacgctaac agagctgctc atcgtgatgg tcattgcagc cattatggcg atgatagccc
      121 tccccaatat gagccaatgg attgcatccc gccgcattgc cagtcatgcg gagcggattg
      181 ccaacctttt gcgtttctcc aggggagaag ccgtccggct caatcttcct gtctatatct
      241 gtcctgttca agttaaaaaa ggcggtgcgc ccaacaataa atgtgacttc ggcaagaagg
      301 ggcagggaat gttggctttt ggcgataaga atggcaataa gacatatgac ggcgatacgg
      361 cggatgttct ccttcgcagt gtggtattga atgatgatat caatgataag cggattaatt
      421 atgcctttaa ccatatcgct ttcggtcaaa cgcagccgac cgctgaccgt gtagtttgga
      481 cattcaatca aaacgggacg ttcggttata cgaacgacca gcatcttaca agccaatcca
      541 gcttttctta ttccgacggt tatatccaaa tcgtgctgac agatgcgaga gcagtttcag
      601 atgccgataa gaaattccgt tcggcggtgg ttttgattaa cagcagcggc agggttgagg
      661 tttgtcctag aaacgatagg cgtaccgtat gccaatataa atgattgttt tagtcggttt
      721 gggaaataaa aaaatgaaga ataatgattg cttccgcctg aaaaaccccc agtctggtat
      781 ggcgctgata gaagtcttgg tcgctatgct cgttctgacc atcggtattt tggcactatt
      841 gtctgttcag ttgcggacag tcgcttccgt cagggaggca gagacgcaaa ccatcgtcag
      901 tcaaatcacg caaaacctga tggaaggaat gttgatgaat ccgaccattg attcggacag
      961 caacaagaaa aactataatc tttacatggg aaacaataca ctatcgcata cactatcagc
     1021 tgtggatggt gagtttgcga ttgatgccat aaaaactaag acacagttgg cagaggcaca
     1081 attgaagaga tttagttatg agctgaaaaa tgccttgccg gatgcggcag ccatccatta
     1141 cgccgtctgc aaggattcgt cgggtaacgc gccgacattc tccggcaatg ctttttcttc
     1201 aaattgcgac aataaggcaa acggggatac tttaattaaa gtattgtggg taaatgattc
     1261 ggcaggggat tcggatattt cccgtacgaa tcttgaggtg agcggcgaca atatcgtata
     1321 tacctatcag gcaagggtcg gaggtcggga atgagacgta aaatgctaaa cgtaccaaaa
     1381 ggcagttatg atggtatgaa aggttttacc attattgaat ttttggttgc gggcatgctc
     1441 agtatgattg tcctgatggc ggtcggatcg agttacttta catctcggaa attaaatgat
     1501 gcggcaaacg agcgtctttc cgcacaacag gatttgcgga atgcggcaac attgattgtc
     1561 cgcgatgcaa gaatggcagg gggcttcggt tgtttcaata tgtccgagca tcctgcaact
     1621 gatgttgttt ccgatgtggc gcaaaaaaac cgttcttttt ccttaaaaag gaacggtata
     1681 gataaactta ttcccatagc ggaatcttca aatatcggat atccgggttt tacccagcgc
     1741 cttaacgcat tgattttcca atacggaatc gatgatgtta atgcaagcgc cgatactacc
     1801 gtcgtcagca gctgtgccaa aatagcaaaa ccgggtaaga aaatatctac cttgcaagaa
     1861 gcaaagagtg aattacagat tactaatgat gataaacaaa atggaaatat cacccgtcaa
     1921 aggcatgtgg tcaatgccta tgcggtcggc aggattgccg gtgaggaagg tttgttccgc
     1981 ttccaattga atgatgatgg gcagtggggc aatcctcagt tgttggttaa aaagattaat
     2041 aaaatggata tacggtatat ctatcttctc gtggaaaatc ctggtatacc gcctaccaat
     2101 tctccccggt atatttacgg ttgccctgaa gatgacgatg ccggcaaaga ggaaaaattc
     2161 aaatatacgg gtacattcga cagctccgca aatgctgtta cgcccgccgg ggtggaggtt
     2221 ttattgagta gcggtactga taccaagatt gccgcttctt cagacaatca tatttatgct
     2281 taccgtatcg atgcgacaat acgcggggga aatgtatgcg caaacagaac actttgacgg
     2341 gaatcccgac ttctgacgga cagagggggt ttgcactgtt tatcgtgctg atggtgatga
     2401 tcgtcgtggc ttttttggtt gtaactgccg cgcagtctta caataccgag cagcggatca
     2461 gtgccaacga atcagacagg aaattggctt tgtctttggc cgaggcggct ttgcgggaag
     2521 gcgaacttca ggttttggat ttggaatatg atacggacag taaggttaca tttagcgaaa
     2581 actgtggaaa aggtctgtgt accgcagtga atgtgcggac aaataatgat aatgaagagg
     2641 cttttgacaa tatcgtggtg caaggcaagc ccaccgttga ggcggtgaag cgtttttgct
     2701 ctgcaaattc taccgacctg tgcattgaca ataaagggac gcaatataag aaaggcacga
     2761 gaagcgtcag caaaatgcca cgttatatta tcgaatattt gggcgtgaag aacggagaaa
     2821 atgtttatcg ggttactgcc aaggcttggg gtaagaatgc caataccgtg gtcgtccttc
     2881 aatcttatgt aagcaataat gatgagtaat aaaatggaac aaaaagggtt tacattgatt
     2941 gagatgatga tagtcgtcgc gatactcggc atcatcagcg tcattgccat accttcttat
     3001 caaagttata ttgaaaaagg ctatcagtcc cagctttata cggagatggt cggtatcaac
     3061 aatatttcca aacagtttat tttgaaaaat cccctggacg ataatcagaa catcaagagc
     3121 aaactggaaa gatttgtctc aggctataag atgaatccga aaattgccga aaaatataat
     3181 gtttcggtgc gttttgtcaa tcaggaaaaa ccaagggcat acagcttggt cggcgttcca
     3241 aagacgggga cgggttatac tttgtcggta tggatgaaca gcgtgggcga cggatacaaa
     3301 tgccgtgatg ccgcttctgc ccaagcccat ttggagacct tgtcctcaga tgccggctgt
     3361 gaagccttct ctaatcgtaa aaaataaggt tgttttgcca ataccgtctg aaaatcaatg
     3421 ttcagacggt atttttatgg gtatagtgga ttaacaaaaa tcgggacaag gcg
//
LOCUS       DAXHNP010000182         3434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.182, whole genome shotgun sequence.
ACCESSION   DAXHNP010000182 DAXHNP010000000
VERSION     DAXHNP010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.182"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     regulatory      65..168
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            235..1458
                     /gene="cytX"
                     /locus_tag="ACFM5C_001924"
     CDS             235..1458
                     /gene="cytX"
                     /locus_tag="ACFM5C_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003519479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HFC6069570.1"
                     /translation="MSGNASSPSSSAAIGLIWFGAAVSIAEISTGTLLAPLGWQRGLA
                     ALLLGHAVGGALFFAAAYIGALTGRSSMESVRLSFGKRGSVLFSVANMLQLAGWTAVM
                     IYAGATVSSALGKVLWDGESFVWWALANGALIVLWLVFGARKTGGLKTVSMLLMLLAV
                     LWLSAEVFSTAGSTAAQVSDGMSFGTAVELSAVMPLSWLPLAADYTRHARRPFAATLT
                     ATLAYTLTGCWMYALGLAAALFTGETDVAKILLGAGLGAAGILAVVLSTVTTTFLDAY
                     SAGASANNISARFAETPVAVGVTLIGTVLAVMLPVTEYENFLLLIGSVFAPMAAVLIA
                     DFFVLKRREEIEGFDFAGLVLWLAGFILYRFLLSSGWESSIGLTAPVMSAVAIATVLV
                     RLFFKKTQSLQRNPS"
     gene            1455..2555
                     /locus_tag="ACFM5C_001925"
     CDS             1455..2555
                     /locus_tag="ACFM5C_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFC6069571.1"
                     /translation="MTRIAILGGGLSGRLTALQLAEQGYQIALFDKGCRRGEHAAAYV
                     AAAMLAPAAEAVEATPEVIKLGRQSIPLWRNIRGHLKTPAMMQENGSLIVWHGQDKPL
                     SSEFVRHLKRGGVADDEIVRWRADEIAEREPQLGGRFSDGIYLPTEGQLDGRQILSAL
                     ADALDELNVPCHWEHECVPEGLQAQYDWLIDCRGYGAKTAWNQSPEHTSTLRGIRGEV
                     ARVYTPEITLNRPVRLLHPRYPLYIAPKENHVFVIGATQIESESQAPASVRSGLELLS
                     ALYAVHPAFGEADILEIATGLRPTLNHHNPEIRYNRARRLIEINGLFRHGFMISPAVT
                     AAAVRLAVALFDGKDAPERDEESGLAYIRRQD"
     gene            2576..3193
                     /gene="thiE"
                     /locus_tag="ACFM5C_001926"
     CDS             2576..3193
                     /gene="thiE"
                     /locus_tag="ACFM5C_001926"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFC6069572.1"
                     /translation="MTFPPLKSPLKFYAVVPTADWVGRMVKAGADTVQLRCKALHGDE
                     LKREIARCVAACQGSHTQLFINDHWREAIEAGAYGVHLGQEDMDTADLAAIAAAGLRL
                     GLSTHSVAELDRALSVHPSYVASGAIFPTTTKQMPTAPQGLDKLCEYVKQAGGTPVVA
                     IGGIDLNNARAVLATGVSSLAAVRAVTEAANPEAVVKAFQALWDG"
BASE COUNT          695 a         1076 c          951 g          712 t
ORIGIN      
        1 aatgcgccgt gccgcctgaa atgtaagatt tttgccaacg ccccctgctt ttgtgtacac
       61 ttaaagctcc ttgtcggagt gccgccgccg ggcggctgag attgcgaaag cagaatccgt
      121 agaacctgtc ggggtaatgc ctgcgtagga aacaaaccgt caaatgcctt atcaggcttc
      181 cgttcccttt tccgcacttc cccgcccacc ttccttcttt ttaaaggacg tcatatgtcg
      241 ggcaatgcct cctctccttc atcttccgcc gccatcgggc tgatttggtt cggcgcggcg
      301 gtctcgattg ccgaaatcag cacgggtacg ctgcttgcgc ctttgggctg gcaacgcggt
      361 ctggcggctc tacttttggg tcatgccgtc ggcggcgcgc tgttttttgc ggcggcgtat
      421 atcggcgcac tgaccggacg cagctcgatg gaaagcgtgc gcctgtcgtt cggcaaacgc
      481 ggttcagtgc tgttttccgt ggcgaatatg ctgcaactgg ccggctggac ggcggtgatg
      541 atttacgccg gcgcaacggt cagctccgct ttgggcaaag tgttgtggga cggcgaatct
      601 tttgtctggt gggcattggc aaacggcgcg ctgattgtgc tgtggctggt tttcggcgca
      661 cgcaaaacag gcgggctgaa aaccgtttcg atgctgctga tgctgttggc ggttctgtgg
      721 ctgagtgccg aagtcttttc cacggcaggc agcaccgccg cacaggtttc agacggcatg
      781 agcttcggaa cggcagtcga attgtccgcc gtcatgccgc tttcctggct gccgcttgcc
      841 gccgactaca cgcgccacgc gcgccgcccg tttgcggcaa ccctgacggc aacgctcgcc
      901 tacacgctga ccggctgctg gatgtatgcc ttgggtttgg cagcggcgtt gttcaccgga
      961 gaaaccgacg tggcaaaaat cctgctgggc gcaggtttgg gtgcggcagg cattttggcg
     1021 gtcgtcctct ccaccgttac cacaacgttt ctcgatgcgt actccgccgg cgcgagtgca
     1081 aacaatattt ccgcgcgttt tgcggaaaca cccgtcgctg tcggcgttac cctgatcggc
     1141 acggtgcttg ccgtcatgct gcccgttacc gaatatgaaa acttcctgct gcttatcggc
     1201 tcggtatttg cgccgatggc ggcggttttg attgccgact ttttcgtctt gaaacggcgt
     1261 gaggagattg aaggctttga ctttgccgga ctggttctgt ggctggcggg cttcatcctc
     1321 taccgcttcc tgctctcgtc cggctgggaa agcagcatcg gtctgaccgc ccccgtaatg
     1381 tctgccgttg ccattgccac cgtactggtg cgccttttct ttaaaaaaac ccaatcttta
     1441 caaaggaacc cgtcatgacc cgtatcgcca tcctcggcgg cggcctctcg ggaaggctga
     1501 ccgcactgca gcttgcagaa caaggttatc agattgcact tttcgataaa ggctgccgcc
     1561 ggggcgaaca cgccgccgcc tatgttgccg ccgccatgct cgcgcctgcg gcggaagcgg
     1621 tcgaagccac gcctgaagtc atcaaactgg gcaggcagag catcccgctt tggcgcaaca
     1681 tcagaggcca tctgaaaacg cctgccatga tgcaggaaaa cggcagcctg attgtgtggc
     1741 acgggcagga caagccatta tccagcgagt tcgtccgcca tctcaaacgc ggcggcgtgg
     1801 cggatgacga aatcgtccgt tggcgcgcag atgaaatcgc cgaacgcgaa ccgcaactcg
     1861 gcggacgttt ttcagacggc atctacctgc cgaccgaagg ccagctcgac gggcggcaaa
     1921 tattgtctgc acttgccgac gctttggacg aactgaacgt cccctgccat tgggaacacg
     1981 aatgcgtccc cgaaggcctg caagcccaat acgactggct gatcgactgc cgcggctacg
     2041 gcgcaaaaac cgcgtggaac caatcccccg agcacaccag caccctgcgc ggcatacgcg
     2101 gcgaagtggc gcgggtttac acacccgaaa tcacgctcaa ccgccccgtg cgtctgctcc
     2161 atccgcgtta tccgctctac atcgccccga aagaaaacca cgtcttcgtc atcggcgcga
     2221 cccaaatcga aagcgaaagc caagcccccg ccagcgtgcg ttcagggttg gaactcttgt
     2281 ccgcactcta tgccgtccac cccgccttcg gcgaagccga catcctcgaa atcgccaccg
     2341 gcctgcgccc cacgctcaac caccacaacc ccgaaatccg ttacaaccgc gcccgacgcc
     2401 tgattgaaat caacggcctt ttccgccacg gtttcatgat ctcccccgcc gtaaccgccg
     2461 ccgccgtcag attggcagtg gcactgtttg acggaaaaga cgcgcccgaa cgtgatgaag
     2521 aaagcggttt ggcgtatatc cgaagacaag attaaagccg tctgaaagga accccatgac
     2581 cttcccgcca ctcaaatccc cgctcaaatt ctacgccgtc gtccccaccg ccgattgggt
     2641 ggggcgcatg gtcaaagcag gtgccgacac ggtgcaactg cgctgcaagg ccctgcacgg
     2701 cgatgaattg aaacgcgaaa tcgcccgctg tgtcgccgcc tgtcagggca gccatacgca
     2761 gcttttcatc aacgaccact ggcgcgaggc aatcgaagca ggcgcatacg gcgtgcatct
     2821 cgggcaggaa gatatggaca ccgccgacct cgccgccatt gccgccgccg gtttgcgctt
     2881 gggtttgagt acgcactccg tcgccgaact cgaccgcgcc ctgtccgtac accccagcta
     2941 tgtcgccagc ggcgcgattt tcccgaccac gaccaagcaa atgcccaccg ccccgcaagg
     3001 cttggacaaa ctgtgcgagt atgtgaaaca ggcaggcggc acgcccgtcg tcgccatcgg
     3061 cggtatcgac ttgaacaacg cccgagccgt actcgccacc ggcgtttcct cactcgccgc
     3121 cgtccgcgcc gtaaccgaag cggcaaatcc cgaagcggtg gttaaagcgt ttcaggcttt
     3181 gtgggatgga taaaaccgaa agaagaaaat tcaattgccg tgtcggcaaa acttagcccg
     3241 ttatcgcaaa catacttaac tttaaatgtg gcatatcatc aaattccgtc attcccgcgt
     3301 aagcgggaat ccgccttaaa acttgagaaa ccatcatttg aaaaacagtt tccgaatttc
     3361 aaaaatggat tcccgcccgt gcgggaatga cggcaaccgg tcagttgcgt atcaaaaaat
     3421 aaagtaattc ggct
//
LOCUS       DAXHNP010000183         3376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.183, whole genome shotgun sequence.
ACCESSION   DAXHNP010000183 DAXHNP010000000
VERSION     DAXHNP010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.183"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(214..1278)
                     /locus_tag="ACFM5C_001927"
     CDS             complement(214..1278)
                     /locus_tag="ACFM5C_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6069573.1"
                     /translation="MEKEFRILNIVSAKIWGGGEQYVYDVSKALGLRGCTMFTAVNKN
                     NELMHRRFSEVSSVFTTRLHTLNGLFSLCALTRFIRKNRISHLMIHTGKIAALSILLK
                     KLTGVRLIFVKHNVVANKTDFYHRLIQKNTDRFICVSRLVYDVQTADNPFKEKYRIVH
                     NGIDTGRFPPSQEKPDSRFFTVAYAGRISPEKGLENLIEACVILHRKYPQIRLKLAGH
                     GHPDYMCRLKRDVSASGAEPFVSFEGFTEDIASFYRQSDVVVLPSLVPEAFGLSLCEA
                     MYCRTAVISNTLGAQKEIIEHHQSGILLDRLTPESLADEIERLVLNPEAKNALATAGH
                     QCVANRFTINHIADKLLDAI"
     gene            complement(1279..2037)
                     /locus_tag="ACFM5C_001928"
     CDS             complement(1279..2037)
                     /locus_tag="ACFM5C_001928"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6069574.1"
                     /translation="MKKVSVLIVARNEANHIRECIESCRFDKEVIVIDDHSTDNTAEI
                     AEGLGAKVFQRHLNGDFGAQKTFAIEQAGGEWVFLIDADERCTPELSDEISKIVQTGD
                     YAAYFVERRNLFPNHPATHGAMRPDSVCRLMPKKGSSVQGKVHETVQTPYPKRRLKHF
                     MYHYTYDNWEQYFNKFNKYTSISAEKYREQGKPVRFVRDIILRPIWGFFKIYILNKGF
                     LDGKMGWIMSVNHSYYTMIKYVKLYYLYKSGGKF"
     gene            complement(2112..2187)
                     /locus_tag="ACFM5C_001929"
     tRNA            complement(2112..2187)
                     /locus_tag="ACFM5C_001929"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2152..2154),aa:Ile,seq:cat)
     gene            complement(2241..>3376)
                     /locus_tag="ACFM5C_001930"
     CDS             complement(2241..>3376)
                     /locus_tag="ACFM5C_001930"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HFC6069575.1"
                     /translation="DWHERFPELEAQLGAPIEDYAPPKHWTRKQLRSMGRVSYLCVDA
                     AEQALTDAGLLGDESITDGRMGVACGSSSGSTKDIGDVGELLLTGTSRNFSANTYVRM
                     MPHTAAANIGIFFGLKGRIIPTSSACSSGSQGIGYAYEAIKYGLTDMMLAGGGEEFFS
                     SEVYVFDSLYAASRRNGEPEKTPRPYDANRDGLVIGEGAGIFVLEELEHAKRRGAIIY
                     AELVGYGANSDAYHISTPRPDAQGAILAFQTALQHAGLAPEDIGWINLHGTGTHHNDS
                     MESRAVAAVFGNNTPCTSTKPQTGHTLGAAGAIEAAFAWGIADRQSNPEGKLPPQLWD
                     GQNDPNLPAINLTGSGSRWETEKRIAASSSFTFGGSNCVLIIG"
BASE COUNT          762 a          828 c          897 g          889 t
ORIGIN      
        1 tctactatac attgtaacaa agcacttgat gcggcagcac aagccgggga agacgctgca
       61 aaactttgcc aataggctgc gtaatatcgg gggatattgg gattttctta tttttaagga
      121 tggattcggg gtgtttcttt ccaatgaacg aatataattt ggcggtttgt tgcatcaaag
      181 gctttcagac ggcatatgcc gtctgaaagc ggcttatatt gcatccaata atttgtcggc
      241 gatatggttg atggtaaaac ggttggcgac gcattgatgc cctgccgttg ccagtgcgtt
      301 ttttgcttcg gggtttaaga cgaggcgttc gatttcatcc gccaaagatt caggtgtcag
      361 cctgtccagc agaatccccg attgatgatg ttcgataatt tccttttgcg cgcccaaagt
      421 attggaaatc actgccgttc ggcagtacat cgcctcgcat aatgacaaac cgaatgcctc
      481 cgggacgagg ctgggcaaaa ccacgacatc gctttggcgg taaaacgaag caatgtcttc
      541 ggtaaaccct tcaaaagaaa caaatggttc tgctcctgaa gcagatacgt cccgcttcag
      601 gcggcacata taatccggat gtccgtgccc tgccaatttg agtctgattt gaggatattt
      661 ccgatgcagt atcacacagg cttcaatcag gttttccaat cctttttccg gactgatcct
      721 gccggcgtag gcgacggtaa aaaaacggct gtcgggtttt tcttgagagg gagggaaacg
      781 gccggtatcg ataccgttat gaacaatccg gtatttttct ttaaagggat tgtcggcggt
      841 ttgcacatcg taaaccagac gggaaacgca aataaagcgg tctgtgtttt tctgtatcag
      901 gcggtgataa aaatcggttt tgttggcgac gacattgtgt ttgacaaata tcaggcgcac
      961 cccggtcagt tttttcaaaa gtatggataa ggcggcaatt ttgccggtgt gtatcatcag
     1021 gtgggaaatg cggtttttcc gaataaagcg ggtaagcgcg cagagcgaaa acagcccgtt
     1081 gagcgtgtga aggcgtgtcg tgaaaacgga agaaacttcg gaaaagcgtc tgtgcatcaa
     1141 ctcattattt ttattgacgg cggtaaacat cgtgcagccc cgcagtccca atgcttttga
     1201 aacatcatag acatattgtt cgcccccgcc ccaaatcttg gccgatacga tatttaatat
     1261 cctgaattct ttttccattt aaaattttcc gccggatttg tacagataat atagtttgac
     1321 atatttaatc attgtgtaat agctgtggtt gacggacata atccaaccca tttttccatc
     1381 gagaaaccct ttgttcagga tataaatttt gaaaaacccc caaattgggc ggaggataat
     1441 gtccctaacg aaacgcacgg gctttccctg ctctcggtat ttctcggctg aaatggaagt
     1501 atatttgttg aatttgttga aatattgttc ccagttgtcg tacgtataat ggtacataaa
     1561 atgtttcaga cggcgtttag ggtagggggt ctgtacggtt tcgtgtactt tgccttgcac
     1621 cgaactgcct ttcttcggca tcaaacggca tacgctgtcg ggacgcatcg cgccgtgtgt
     1681 ggcgggatgg ttggggaaaa ggttgcggcg ttcgacaaaa taggcggcat aatcgccggt
     1741 ttggacaatt tttgagattt catcagatag ttccggcgtg cagcgttcgt ctgcatcaat
     1801 caggaaaacc cattctccgc ctgcctgttc gatggcaaat gttttttgcg ctccgaaatc
     1861 cccgttcaaa tgccgttgga agacttttgc gcccaaaccc tcggcaattt cggcagtatt
     1921 gtcggtgctg tggtcatcga taacgataac ttctttatcg aaacggcaac tttcaataca
     1981 ttcccgaatg tggtttgctt catttctagc aacaatcaat acgctgactt ttttcattat
     2041 caaggtttct caaagcattt tggtttcaca gggcggcaaa aaagcccaaa catacgtccg
     2101 ggcttgggaa ttggtgggtc cggtggggtt cgaacccacg accaagggat tatgagtccc
     2161 ctgctctaac ccctgagcta cagacccgtc aagagtaggc gcgtattgta tagcatagcg
     2221 gtgggattga caaacttatt tcatccgatg attaagacgc agttgcttcc cccgaaggta
     2281 aacgatgagc tggcggcaat gcgtttttcg gtttcccagc ggctgccgct gccggtcagg
     2341 ttgatggcgg gaaggttcgg atcgttctgc ccgtcccaaa gctggggcgg aagttttcct
     2401 tcgggattgc tttgccggtc ggcaatgccc cacgcgaacg cggcttcgat tgcgcccgcc
     2461 gcacccagcg tgtgtccggt ttgcggcttg gtggacgtgc agggcgtatt gttgccgaaa
     2521 accgctgcaa cggcacggct ttccatactg tcgttgtggt gcgtcccggt gccgtgcaga
     2581 ttaatccagc cgatgtcttc gggcgcaaga cctgcgtgtt gcaatgccgt ctgaaaggca
     2641 aggattgcgc cttgcgcgtc ggggcggggc gtggaaatat ggtaggcatc gctgttggct
     2701 ccgtagccga cgagttcggc gtaaattatc gcaccgcgcc gtttggcgtg ttccaattct
     2761 tccagcacga aaatccccgc gccttcgccg atgaccagcc cgtcgcggtt cgcgtcgtat
     2821 gggcgcgggg ttttttccgg ttcgccgttg cggcggctgg cggcataaag cgagtcgaaa
     2881 acatacactt cggacgagaa aaattcttcg cctccgcccg ccagcatcat atcggtcaga
     2941 ccgtatttga tggcttcgta ggcataacct atgccttggc tgccggacga acacgcgctc
     3001 gatgtcggga tgatgcgtcc tttcagtccg aaaaagatgc cgatattggc ggcggcggtg
     3061 tgcggcatca tacgcacata ggtgttggca ctgaagttgc gcgacgtgcc ggtcagcaac
     3121 aattcgccca catcgccgat gtctttggtg ctgccgctgg aagagccgca ggcaacgccc
     3181 atccgtccgt cggtaatgct ttcgtctccg agcaaaccgg catccgtcaa agcctgctcc
     3241 gccgcatcga cgcacaaata cgacacacgc cccatacttc tgagctgctt gcgcgtccaa
     3301 tgtttcggcg gcgcgtaatc ctcaatcggc gcacccagtt gcgcttccaa ttcggggaaa
     3361 cgttcgtgcc aatcca
//
LOCUS       DAXHNP010000184         3350 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.184, whole genome shotgun sequence.
ACCESSION   DAXHNP010000184 DAXHNP010000000
VERSION     DAXHNP010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.184"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            123..2150
                     /gene="uvrB"
                     /locus_tag="ACFM5C_001931"
     CDS             123..2150
                     /gene="uvrB"
                     /locus_tag="ACFM5C_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFC6069576.1"
                     /translation="MEVIRYPDSPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLL
                     GVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYY
                     QPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
                     QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENAL
                     RISLFDDEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRER
                     IDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDY
                     LPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVM
                     PQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQK
                     GERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGI
                     NLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSM
                     KAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKGRRQGKNKVKV
                     GEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIKESLLFGAE"
     gene            2186..3070
                     /locus_tag="ACFM5C_001932"
     CDS             2186..3070
                     /locus_tag="ACFM5C_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069577.1"
                     /translation="MTSIILELQSLAANPNSDVEELVSKTLMVARKLKINELTEWCNN
                     ELQGYSSKNLPKYRIFYGELKAFNPYRGDVPFMLPDELRERVTRVEYTSSISEIRNLL
                     KTKNNNFIRILSSKEKQFLMNLQDTPFPLEPKIIIYPINLMNIQSKVRQLILAWALRL
                     EEEGILGDGIQFTKSKQEKAMSNQFNIQNMQGFIGDIFGGNVQQNIQDGIHIEKENFN
                     KLANFLAKNGIPSAELEDLRNALIEDGQPTDKKFGSKVSAWIGNIITKASTGAIDVSV
                     GTIAGILTNAISKYYGLM"
     gene            3082..3300
                     /locus_tag="ACFM5C_001933"
     CDS             3082..3300
                     /locus_tag="ACFM5C_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069578.1"
                     /translation="MCGSTTHAVPNRPKPRACLRLTPYHPTNTASVGWILVSDKTFNI
                     PIIAIHCSNAQNVGFENPTYKIIPSIIL"
BASE COUNT         1028 a          879 c          687 g          756 t
ORIGIN      
        1 tgggtagcga ttgggtttca gacggcatac attcaggatt tcaccgcctt atgccgtctg
       61 aaagacgttt ccgacccatc cctactacac gctttgtccg caaacgcatc acaggcaaga
      121 ttatggaagt cattcgatac cccgattccc ccttcaaact ccaccaaccc ttcccgcccg
      181 caggcgacca gcctaccgct attgccgact tgctcgaagg gctttcagac ggccttgcct
      241 accaaaccct gctcggcgta accggttcgg gcaaaaccta caccatggcg aacgtcatcg
      301 cccaaagcgg ccgacccgcc atcatcatgg cgcacaacaa aacccttgcc gcccagcttt
      361 atgccgaaat gcgcgagttt ttccctgaaa acgcggtgga atatttcgtc tcctactacg
      421 actattacca acccgaagcc tatgtgccaa gccgcgattt gttcatcgaa aaagacagtg
      481 cgatcaacga acacattgaa caaatgcgcc tttctgccac caaaaacctg atgacgcgcg
      541 atgacgtgat tatcgttgcc actgtgtccg ccatttacgg tatcggcgac ccgactgagt
      601 atcaacaaat ggtgttgtcc gtcaaagaag gcgacaccat cgagcagcgc gacatcatcg
      661 ccacgctcgt ttccatgcag tacgaacgcg gcgatttgga tttcaaacgc ggcagcttcc
      721 gcgtgcgcgg cgacgtgatt gacgtgtacc ccgccgaaag ctccgaaaac gccttgcgta
      781 tcagcctgtt tgacgacgaa atcgaccgcc tcgatatgtt tgacccgctt tcaggcagcc
      841 tgcaccaacg cgtcggccgc tacaccgtct tcccgtccag ccactacgtt accccgcgcg
      901 acaccgtatt gcgcgcctgc gagtccatca aagaagaatt gcgcgaacgc attgatttct
      961 ttaccaaaga aaaccgtccc gtcgagcaac aacgcatcga acagcgcacc cgtttcgacc
     1021 tcgaaatgct ctacgaaatg ggcttctgca aaggtatcga aaactactcc cgtcacttct
     1081 ccggcaaaaa agaaggcgaa ccgccgccca cgctgatgga ctacctgccc gacaacgcca
     1141 tcatgttcat cgacgaaagc cacgttaccg tcacacaaat cggcggcatg tacaaaggcg
     1201 acgcatcgcg caagcaaaac ctcgtcgatt acggcttccg cctaccttcc gcccgcgaca
     1261 accgcccgct caaattccac gaatttgaaa aagtcatgcc gcaaaccgtc ttcgtttccg
     1321 ccacccccgc caaatacgaa gaagaacacg ccggacaagt ggtcgaacaa gtcgtccgcc
     1381 ccacagggct ggtcgaccct caaatcatca tccgccccgt cgccacccaa gttgatgact
     1441 taatgagcga aatcaacgac cgcatccaaa aaggcgaacg cgtactcgtt accaccctta
     1501 ccaaacgcat ggcggagcaa ctcaccgact attacagcga actcggcatc aaagtgcgct
     1561 acctgcacag cgacatcgac accgtagagc gcgttgaaat tattagagat ttacggctcg
     1621 gattgtttga cgtactcgtc ggcatcaatc tcttgcgcga aggcctcgac atcccagaag
     1681 tctccctcgt cgccatcctc gacgcagaca aagaaggctt cctgcgctcc caccgcagcc
     1741 tgattcaaac cataggccgc gctgcgcgca acgtgaacgg cgtcgcgatt ctgtacgccg
     1801 acaaaatcac cgactctatg aaagccgcca tcgacgaaac cgaacgccgc cgtgaaaaac
     1861 aaattaaatt caacgaagaa cacggcatcg tgccgcaaca gattaaaaaa caggtcaaag
     1921 acatcattga cggcgtgtac cacgaagaag acagcggcaa aggccgtaga caaggcaaaa
     1981 acaaagttaa agtcggcgaa attcacaacg aagaagacac gattaaagaa atcgccaaac
     2041 tcgaaaaagc catgcaacag gcggctaggg atttgcagtt tgaagaagcg gctgttcttc
     2101 gtgataggat acggaatatt aaagagagtt tgttgtttgg ggcggaataa ttttattatt
     2161 tttatttaac atggagatta attaaatgac ttctattatt ttagaactcc aaagcctagc
     2221 tgccaatcca aatagtgatg tagaagagtt agtgagtaaa acattaatgg ttgcaagaaa
     2281 attaaaaatt aatgaattaa ctgaatggtg taataatgaa ttacaaggtt attcatcaaa
     2341 aaatttacca aaatatagaa tattttatgg agagttaaaa gcttttaacc cttatcgtgg
     2401 cgatgttcca tttatgcttc ccgatgaatt gagagaacga gtaacaagag ttgaatatac
     2461 ctcatcaatt agcgaaataa gaaacttact aaaaacaaaa aataataatt ttatacgaat
     2521 tctatctagt aaagaaaaac agtttttaat gaatttacaa gatactccat ttccacttga
     2581 acctaaaata attatttatc caattaactt aatgaatatt caatcaaaag taagacaact
     2641 aattttagct tgggcattac gactggaaga ggaaggtatt ttaggagacg gtatccaatt
     2701 tacaaaatca aaacaggaga aagcaatgtc aaaccaattc aatattcaga atatgcaagg
     2761 gtttattggg gatatttttg gcggtaatgt tcagcaaaat attcaagacg gtattcatat
     2821 tgaaaaagaa aatttcaata aactggctaa ctttttagca aaaaacggga ttccatctgc
     2881 cgaattagaa gatttacgaa atgcactgat agaagatggt cagcccacag ataaaaaatt
     2941 cggctcaaaa gtaagtgcat ggattggcaa tattattaca aaggcttcta ccggtgcaat
     3001 tgatgtttca gtaggtacta ttgcaggaat attaactaat gcgatttcaa aatattatgg
     3061 cttaatgtaa gcaaatgcaa tatgtgcggc tccaccacac acgccgtccc caaccgccca
     3121 aaaccgcgtg cctgcctgcg gcttaccccc taccacccaa ccaacacagc aagcgtaggt
     3181 tggatacttg tatccgacaa aacctttaac attcccatca ttgcaatcca ttgtagcaat
     3241 gcccaaaatg tcggattcga gaatccgacc tacaaaatca ttccgagcat aatactatga
     3301 aataccgtcg tttttaccgc aatggcggca cttacttttt tacggttgta
//
LOCUS       DAXHNP010000185         3340 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.185, whole genome shotgun sequence.
ACCESSION   DAXHNP010000185 DAXHNP010000000
VERSION     DAXHNP010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.185"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            61..690
                     /locus_tag="ACFM5C_001934"
     CDS             61..690
                     /locus_tag="ACFM5C_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HFC6069579.1"
                     /translation="MSETENQALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIK
                     FLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLADLGDKPYEYGKPLPHE
                     TGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHL
                     NALNLTPEAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMPHRH"
     gene            865..3239
                     /gene="hmbR"
                     /locus_tag="ACFM5C_001935"
                     /pseudo
     CDS             865..3239
                     /gene="hmbR"
                     /locus_tag="ACFM5C_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222141.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent hemoglobin receptor HmbR"
BASE COUNT          909 a          859 c          831 g          741 t
ORIGIN      
        1 cgggcaagtg cggattttgc ccgcaccgca tccttatccc ttaccgacaa aggaaaaaat
       61 atgagtgaaa ccgaaaatca agcattgaca tttgccaaac gcttgaaggc ggataccacg
      121 gcggttcacg acagcgtgga taacctcgtt atgtctgtcc aaccgtttgt cagcaaagaa
      181 aactacatca aatttttgaa actccaatcc gttttccaca aggctgtcga ccacatctat
      241 aaagatgccg aattaaacaa agccattccc gagctggaat acatggcgcg atacgatgcc
      301 gtaacgcaag accttgcaga tttgggtgac aaaccttacg aatacggcaa accgctgccg
      361 catgaaaccg gcaacaaagc aatcggctgg ctttattgcg ccgaaggatc caatttgggc
      421 gcggcgtttt tgttcaaaca cgcccaaaaa ctcgattaca acggcgaaca cggcgcgcgc
      481 cacctcgctc cgcatcccga cgggcgcggc aaacactggc gtgccttcgt cgagcatctg
      541 aacgctttga acctgactcc cgaagccgaa gcggaagcca tccaaggcgc gcgcgaagcc
      601 tttgcattct acaaagtcgt gttgcgcgaa accttcggtt tggcagccga tgccgaagca
      661 ccggaaggaa tgatgccgca caggcactaa aaaataatcg aaccaaataa acaaggtctc
      721 ggcatagctg tttgcaggga cctttaatta cacggcgcgg ctttgtttac atggattact
      781 gtcttattaa atattaatga ttatcataaa atctattatt cgctaaccga tggatgaaca
      841 atccatacat cttgagttga taatatgaaa ccattacaaa tgctccctat cgccgcgctg
      901 gtcggcagta ttttcggcaa tccggtcttg gcagcagatg aagctgcaac tgaaaccaca
      961 cccgttaagg cagagataaa agcagtgcgc gttaaaggtc agcgcaatgc gcctgcggct
     1021 gtggaacgcg tcaaccttaa ccgtatcaaa caagaaatga tacgcgacaa taaagacttg
     1081 gtgcgctatt ccaccgatgt cggcttgagc gacagcggcc gccatcaaaa aggctttgct
     1141 gttcgcggcg tggaaggcaa ccgtgtcggc gtgagcatag acggtgtaaa cctgcctgat
     1201 tctgaagaaa actcgctgta cgcccgttat ggcaacttca acagctcgcg tttgtctatc
     1261 gaccccgaac tcgtgcgcaa catcgaaatc gtgaagggcg cagactcttt caataccggc
     1321 agtggtgcat tgggcggcgg tgtgaattac caaacgctgc aaggccgtga tttgctgttg
     1381 gacgacaggc aattcggcgt gatgatgaaa aacggttaca gcacgcgtaa ccgtgaatgg
     1441 acaaatactc tcggtttcgg tgtgagtaac gaccgcgtgg atgctgcttt gctgtattcg
     1501 caacgtcgcg gtcatgaaac cgaaagcgcg ggaaaccgag gctatgctgt ggaaggggaa
     1561 ggcagtggcg cgaatatccg tggttcggca cgcggtatcc ctgattcgtc caaacacaaa
     1621 taccacagct ttttgggtaa gattgcttac caaattaacg ataaccaccg catcggcgca
     1681 tcgcttaacg gccagcaggg acataattac acggttgaag agtcttataa cctgaccgct
     1741 tcttcctggc gcgaagccga tgacgtaaac agacggcgca atgccaacct cttttacgaa
     1801 tggatgcctg attcaaattg gttgtcgtct ttgaaggcgg acttcgatta tcagaaaacc
     1861 aaagtggcgg cggttaacaa caaaggctcg ttcccgatgg attattccac ctggacgcgc
     1921 aactataatc agaaggattt ggacgaaata tacaaccgca gcatggacac ccgattcaaa
     1981 cgttttactt tgcgtttgga cagccatccg ttgcaactcg gggggggcga caccgcctgt
     2041 cgtttaaaac tttcgtcagc cgccgtgatt ttgaaaacct aaaccgcgac gattattact
     2101 tcagcggccg tgttgttcga accaccagca gtatccagca tccggtgaaa accaccaact
     2161 acggtttctc actgtctgac caaattcaat ggaacgacgt gttcagtagc cgcgcaggta
     2221 tccgttacga ccacaccaaa atgacgcctc aggaattgaa tgccgagtgt catgcttgtg
     2281 acaaaacacc acctgcagcc aacacttata aaggctggag cggttttgtc ggcttggcgg
     2341 cgcaactgaa tcaggcttgg catgtcggtt acgacattac ttccggctac cgcgtcccca
     2401 atgcgtccga agtgtatttc acctacaacc acggttcggg taattggctg cctaatccca
     2461 acctgaaagc cgagcgcagc accacccaca ccctgtctct gcaaggccgc agcgaaaaag
     2521 gcatgctgga tgccaacctg tatcaaagca attaccgcaa tttcctgtct gaagagcaga
     2581 agctgaccac cagcggcact cccggctgta ctgaggaaaa tgcttactac ggtatatgca
     2641 gcgaccccta caaagaaaaa ctggattggc agatgaaaaa tatcgacaag gccagaatcc
     2701 gcggtatcga gctgacaggc cgtctgaatg tggacaaagt agcgtctttt gttcctgagg
     2761 gttggaaact gttcggctcg ctgggttatg cgaaaagcaa actgtcgggc gacaacagcc
     2821 tgctgtccac acagccgctg aaagtgattg ccggtatcga ctatgaaagt ccgagcgaaa
     2881 aatggggcgt attctcccgc ctgacctatc tgggcgcgaa aaaggccaaa gatgcgcagt
     2941 acaccgttta tgaaaacaag ggctggggta cgcctttgca gaaaaaggta aaagattacc
     3001 cgtggctgaa caagtcggct tatgtgtttg atatgtacgg cttctacaaa ccggctaaaa
     3061 acctgacttt gcgtgcaggc gtatataatg tgttcaaccg caaatacacc acttgggatt
     3121 ccctgcgcgg cctgtatagc tacagcacca ccaactcggt cgaccgcgat ggcaaaggct
     3181 tagaccgcta ccgcgcccca agccgtaatt acgccgtatc gctggaatgg aagttttaat
     3241 ctggtattat tgaattaatc gccttgttga aaattaaagc cgtccgaatt gtgttcaaga
     3301 actcattcgg acggcttttt accgtaaatc tgtgtgatgg
//
LOCUS       DAXHNP010000186         3321 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.186, whole genome shotgun sequence.
ACCESSION   DAXHNP010000186 DAXHNP010000000
VERSION     DAXHNP010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.186"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(219..602)
                     /locus_tag="ACFM5C_001936"
     CDS             complement(219..602)
                     /locus_tag="ACFM5C_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069580.1"
                     /translation="MEKIKNYIEFKKLFKNITEKFVRDLDITLIEAAEYSIIEFEIYL
                     SEYPEDSTFIFTAWAIYLLENNCLNERGKDNFFIAEMKKCYQQTNLDRIKSIYSSSDY
                     HIFAKDVNKIQQTFKLNLANIMQQE"
     gene            complement(607..1444)
                     /locus_tag="ACFM5C_001937"
                     /pseudo
     CDS             complement(607..1444)
                     /locus_tag="ACFM5C_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249609.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deaminase domain-containing protein"
     gene            complement(1743..2138)
                     /locus_tag="ACFM5C_001938"
     CDS             complement(1743..2138)
                     /locus_tag="ACFM5C_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069581.1"
                     /translation="MNQFCLSEYEKAFLCRIIENNMIWKEYLIEQIENSIIVSRDNTG
                     CGCYIDFQVNLERTNLNKYENIPIFFEGDITAPDKSDAATFLLYTTESLNKAGRIIDF
                     LEVAIAGTNYDEVEVYSWLKMENSLRFGL"
     gene            complement(2150..2863)
                     /locus_tag="ACFM5C_001939"
                     /pseudo
     CDS             complement(2150..2863)
                     /locus_tag="ACFM5C_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236085.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
     gene            complement(2959..3231)
                     /locus_tag="ACFM5C_001940"
     CDS             complement(2959..3231)
                     /locus_tag="ACFM5C_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069582.1"
                     /translation="MNKRMKMCPACQQGYLYHSKPKYLHDEIILCDECDAVWLKGMNI
                     FYGEYEKDFYSYVPFMESQGITSECIWEGDLFDHPYYEDENSNDMD"
BASE COUNT          974 a          674 c          542 g         1131 t
ORIGIN      
        1 ctgaatattt acttgcataa caaatgccgt ctgaaaaatt gtgagctttt cagacggcat
       61 tgagccgtaa atcatggaac gcgtgcgtgc tggagcacac accttacgca tggattttag
      121 gtttcatgca ggctacagct tgctgctgcg gtataaaagt atttttagtg atttactgtt
      181 tttggtattt ttgcccgacg gggttaaaaa tacagttgct actcttgctg catgatattg
      241 gcaagattta atttaaatgt ttgttgaatc ttgtttacat ccttagcaaa aatatgatag
      301 tcactcgaag aatagataga ttttattcta tccaaattag tttgttgata acattttttc
      361 atttccgcga tgaaaaaatt atcttttcct ctttcattga gacagttatt ttctaacaga
      421 tagattgccc atgctgtaaa aataaatgta ctatcttccg gatattcaga taaataaatt
      481 tcgaattcaa ttatagaata ttcagctgct tcaattaatg ttatatctaa atccctgaca
      541 aatttttccg ttatattttt aaataatttc ttgaattcta tataattttt tattttttcc
      601 atgattctat tttcctgtaa aaatatttaa ttgaatattt ggatagcgat ttctaaactc
      661 taaaataaca ttgctgcaag attgacaggc ctttaattct gtaaatagat caattctacc
      721 tgatacatta cgattatttc cgagttgctg tgctatagtt tcaagtaatt tatattctcc
      781 atctatattt cttaatgttc ctctaggagg agaggcaata ttatgatatt tatcaacaga
      841 tataggttta aaaatttttg tttcaggtaa cgaaataaat ccatgttccc ctttttggaa
      901 agaactaaat gcttccatcc tttgcggtaa tcctttaaca tcaatttttg ctatcgcaag
      961 attccctatt tgtcgatact cttccggcag tttcatgcgg actctctggc tttcagcagt
     1021 taaaagcagg agcactgtca ttgctcagat aacgggtaac aggtgtaggc ttggccgata
     1081 ttgcagcctg tgcagataca gatcctgcaa ccatcaatgt gccattaaca acctgaactg
     1141 taccatgcag atattctcca ttagagattg ctttcgctcc ctgtccaatg ttatatcccc
     1201 ctgctgccac agtagctgct ttgacactga agccaagcgg tccgtttaat aagtaaagtg
     1261 caggttgtgc ggcaacagct gatttgtaat caaaagaatc ataacgactc aatgtttgat
     1321 aggctttcga taaagtgtta ttaatatctt tggaaggaat agtgagatta cccattgact
     1381 ggggcgtttt cagtatcgaa gctgcccaag ctgtgttacc tccagaggct tggttaataa
     1441 aatatgttac ctatgtatat tgtttcttca aaaatcaacc gtattgtcct tgggtgattt
     1501 tcgtaccagc acaatcagtc tgccctagtt gacagatcgc gccacactag ccagatacag
     1561 cgtatcattg gtaaaactga taatgcggca atataaagaa aaacttcaat agtatgttaa
     1621 cgaaatttga cgcataaaaa tacgctaaaa aattttcgct tgactaatta aaaatgggat
     1681 tgagcataaa attttaataa tttatattat tgaaaatatc tcagattttc agtcagttta
     1741 ttttacaagc cgaaccgtag gctattttcc atctttaacc atgaatagac ctcaacttca
     1801 tcataatttg tgcctgcaat agcaacttcc agaaagtcaa taattctacc tgctttattc
     1861 aaagactctg tagtatatag caggaaagtc gctgcatctg acttatccgg tgcagtgatg
     1921 tctccttcaa aaaaaatagg gatattttcg tatttattta gattagttct ttctaaattt
     1981 acctgaaaat caatgtagca cccacatcct gtattatctc tagatactat tattgaattt
     2041 tctatttgct ctattaaata ttccttccat atcatattgt tttcaataat tctacataag
     2101 aaagccttct catattcaga taaacaaaac tggttcatat attctaccct tacattttca
     2161 aaatagttgc aatacgagat actccattgt tgacatatac gcgaacaatt accgttatac
     2221 cattgaccgt tacagtaact ggataatttc ctgtttttgt cagttttaaa gcatccactg
     2281 ccttttgcgt cgctacaaca gcattttcca tggagcctga tttttgaatc aatgtattac
     2341 cgatgcttcc ttgatgcccc ttaaagatgt gatgaacttt atttagccaa tctacaccgt
     2401 atctttcagc caatagtcga gaattacttt cacctatttt ttccatcgaa gctaaaatcc
     2461 tttgagcata ggcagcatca gctgttgaaa aatttgcttc gcccaacaaa agccgtaatt
     2521 cctgaatatc tcctcgtaaa attgcatttc ttactcccgc ttctaatgtg gtttgtggct
     2581 gaaagaggga attattctct accgccacag tagccgcatt cgccgctgta ttcacatccc
     2641 cgcctacaac ggcagacgca gtgccggcaa ccagttttga ataggcagta atcttcgctt
     2701 tagctttttc gatttcggtc gcactcatac gactgaaatc agtattctta accaaagcct
     2761 caccaacaat ctcaccgact gcagcgccta tcgcaccatc ctgacactta cccttattcg
     2821 ccgccgctgc cgcacagccc gctatggcat gggcaatctt gtgggtggta tatcgctgcc
     2881 agccctctct gttgataatc ttgcgtatga ttacgccgtt tgatggctaa tcgtacctac
     2941 gcaggcttaa aatttccatc aatccatatc atttgagttt tcatcttcat aatatggatg
     3001 atcaaacaaa tctccttccc aaatacattc actcgttata ccttgggatt ccatgaaagg
     3061 aacataagaa taaaaatctt tttcatattc tccataaaat atattcatac ctttgagcca
     3121 tactgcatcg cattcatcac acagaataat ttcatcatga agatatttag gtttcgaatg
     3181 gtagagatag ccttgttgac aagcaggaca cattttcatt ctcttattca tgattactcc
     3241 atataatcga tttatttttg tgggtaagca gtagtgattt gattgctgcc tttagtctgt
     3301 acaacaatac gtatatagca a
//
LOCUS       DAXHNP010000187         3212 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.187, whole genome shotgun sequence.
ACCESSION   DAXHNP010000187 DAXHNP010000000
VERSION     DAXHNP010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.187"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(63..2207)
                     /gene="fetA"
                     /locus_tag="ACFM5C_001941"
                     /gene_synonym="frpB"
     CDS             complement(63..2207)
                     /gene="fetA"
                     /locus_tag="ACFM5C_001941"
                     /gene_synonym="frpB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021438799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor FetA/FrpB"
                     /protein_id="HFC6069583.1"
                     /translation="MNTPLFRLSLLSLTLAAGFAHAAENNAKVVLDTVTVKGDRQGSK
                     IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNA
                     YSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLD
                     KNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNNEKDYEAGKGFRNNFNGGK
                     TVPYSALDKRSYLAKIGTTFGDGDHRIVLSHMKDQHRGIRTVREEFTVGSEDSRINIK
                     RQAPAYRETTQSNTNLAYTGKNLGFVEKLDANAYVLEKERYSADDSGTGYAGNVKGPN
                     HTRITTRGANFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSQFKIEDKEKATDEEKN
                     KNRENEKIAKAYRLTNPTKTDAGAYIEAIHEIDGFTLTGGLRYDRFKVKTHDGKTVSS
                     SNLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKAERARN
                     TEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVAVREAVNAGYIKNHGYELGAS
                     YRTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFQNPNLEIG
                     WRGRYVQKAVGSILVAGQKDRNGKLENVVRKGFGVNDIFANWKPLGKDTLNVNLSVNN
                     VFNTFYYPHSQRWTNTLPGVGRDVRLGVNYKF"
BASE COUNT          721 a          734 c          893 g          864 t
ORIGIN      
        1 aaattatcag aacagatgcc gtctgaaagg ctttcagacg gcattttttc gggatgtgcg
       61 ttttagaact tgtagttcac gcccaagcgt acatcacgtc ccacgcccgg cagggtattg
      121 gtccagcgtt ggctgtgcgg atagtagaac gtgttgaaca cgttgttaac cgaaagatta
      181 acattgagcg tgtctttgcc cagcggtttc cagttggcga agatgtcgtt cacaccgaaa
      241 cctttgcgta caacgttttc caatttgccg ttgcggtctt tttgacctgc caccaatatc
      301 gaacccacgg ctttttgaac ataacggccg cgccagccga tttccagatt cgggttttgg
      361 aagcggtagg caagggaagc cgtccaagtg cggccgactt gtgcgccaaa ttcaggattc
      421 gcgctcaaca gcttgtcttt gtgcgtatcg taaaagcgcg gtttgctgtg gcttacgccg
      481 actttggcag tcaagccgcc ggtgcggtag gacgcgccca attcgtaacc gtggtttttg
      541 atgtagccgg cgttgacggc ttcacggacg gcgacagagt cgtggcggtt ttgcggattg
      601 gcaagcgcgt ctttgatggt ctgccagaag tagctgccgt tggcggcaaa cgtgccgtcg
      661 ttgtagttga agccgatttc ggtattgcgc gcgcgttcgg ctttggtgcc gtcggcaatc
      721 gagatgatgc cgcgtttgcc gtgggtttgc agcgcgtcat acaggcgcgg gctgcggctg
      781 gcgtagttgt ggcttgcgct gaagctccag tgttcgtgcg gctgccaaat cacgccgaaa
      841 ctcgggttaa ggttgctgct tgaaacggtt ttgccgtcgt gggttttcac cttgaagcgg
      901 tcgtaacgca gcccgccggt cagggtaaag ccgtcaatct cgtgaatggc ttcgatatac
      961 gcgccggcat cggttttggt cgggttggtc agacggtagg ctttggcaat tttttcattt
     1021 tcacggttct tatttttctc ttcatcagtt gctttttctt tatcttcaat tttaaattgt
     1081 gaattcaaaa acgcttgcgg tttgatttcc tgatggcggt agttgatacc gtatttcagc
     1141 agggtttgtt cggcaaggcg gctgtcgaag ttgaagttcg caccacgagt ggtgattcgg
     1201 gtatggttgg ggccttttac attgcctgcg tagccggtgc cgctgtcatc ggcggaatag
     1261 cgttcttttt ccaacacata ggcgttggca tccagttttt cgacaaagcc caggttttta
     1321 cccgtgtacg ccaaattggt gttggattgt gtggtttcgc ggtaagcagg ggcttggcgt
     1381 ttaatattta tccgtgaatc ttcgctgccg acggtaaatt cttcacgcac agtgcggatg
     1441 cctcggtgtt ggtctttcat atggctcaac acgatgcggt ggtcgccgtc gccgaaggtt
     1501 gttccgattt tggcgaggta gctgcgtttg tccagcgcgc tgtacggtac ggttttgccg
     1561 ccgttgaaat tattacggaa gcctttacct gcttcgtaat ctttttcatt gttgcggttg
     1621 taagagaaca agccgtcgaa gttgccctct tttccgaata cgcttgcgcc gtagcttacg
     1681 ccttcgttgc tggcgaagcc gctgttgagg cgcacgcccc agtttttatc caagcctttg
     1741 agcaggtctt gggcatcgac ggttttggcg ataatcgcgc cgttggttgc gccgataccg
     1801 gcagaggcag aacccgcgcc tttttgtacg gaaacgactt taaccaaagc gggatcgaca
     1861 ataaatctgc cttggtggta aaggatttgg ctgtcggaat aggcgttgtc caccttgatg
     1921 tcgacagagt tctgacccat gccgcgcagc gtcaggaatt gggacgtgcc gttgccgccg
     1981 ccgaaatcga tggatggctc ttcttttaag agttcgcgca tatcggttgc ggtgctttcg
     2041 tctttttgtt gaagcgtaac gatgttggta cggattttgc tgccttggcg gtcgcctttt
     2101 acggtaacgg tatccagtac gaccttggca ttattttctg ccgcatgggc aaaacctgcc
     2161 gctagggtaa gcgagagcag gctgagacgg aacaatgggg tattcattca atcgtcctct
     2221 tgagtgtatg aagggaagtt aagccaaacc gttaagattt ggcaggataa gaaaaataat
     2281 taataattat ttttatttat attaacaggg ggggggattt ttgcaaagct gattatcgtt
     2341 tttatttgcg aagtgttgtt ttttgttgac aggttttgtc ggaaatgtat agtggactaa
     2401 caaaaatcag gataaggcga cgaagccgca gacagtacag atagtacggc aaggcgaggc
     2461 aacgctgtac tggtttttgt tagtccacta taaaaaacgg cggaaatata gtggattaac
     2521 aaatgcggga atgacgaaaa gcaacctttc cgcgtccttc ccgcgaaagc gggaatctag
     2581 aacccctaac gcggcaggaa tctatcggaa aaaaccgaaa ccgaacgaac ctagattccc
     2641 gcctgcgcgg gaatgacgaa aagcaacctt tccgcgtcct tcccgcaaaa gcgggaatct
     2701 agaacctcta acgtggcagg aatctatcgg aaatgactga aaccgaacag actggattcc
     2761 cgcctgtgcg ggaatgacga agcctgcgtg ggaatgacga aaagcaacct ttccgtgtca
     2821 ttcccgcaaa agcgggaatc taggaactca aagctgcaag aatttatcag aaacaactgg
     2881 aacttaaaaa aactagattc ccgcctgcgc gggaatgacg aagggttaaa gaaatgacga
     2941 gaaacggcgg taatttatcg ggaataaccg aaaacgaacg gaaatcagga caaggcgacg
     3001 aagccgcaga cagtacaaat aggacggaac cgattcactt ggtgcttgag caccttagag
     3061 aatcgttctc tttgagctaa ggcgaggcaa cgacgtactg gtttttgttc atccactata
     3121 acagcaaccc tgtcgccgtc attcccgcga aagcgggaat ccagtccgtt cagtttcggt
     3181 catttccgat aaattcctgt tgcttttcat tt
//
LOCUS       DAXHNP010000188         3190 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.188, whole genome shotgun sequence.
ACCESSION   DAXHNP010000188 DAXHNP010000000
VERSION     DAXHNP010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.188"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            67..1020
                     /locus_tag="ACFM5C_001942"
     CDS             67..1020
                     /locus_tag="ACFM5C_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HFC6069584.1"
                     /translation="MTHTVHLHLEETDNLALQRLCGSFDNNLDLLAKALDIHISRRFE
                     HFTFNGAFAHAGKRALLKLLETAQTRDLNDGDIRLAAVEAQTEDAGHQEKNHDHAYYF
                     RTKRGSIGGRTPRQNGYIRALLNHDIVFGLGPAGTGKTYLAVAAAVDAMEKHQVERII
                     LVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYDLMGFDRVTKLIEKGLIEIAPLA
                     YMRGRTLNGAYIILDEAQNTTPEQMKMFLTRIGFGAKAVITGDTSQIDLPKNIKSGLK
                     DAREKLHNVEGLYFHTFTGEDVVRHPLVQKIVEAYESAEHD"
     gene            complement(1131..1454)
                     /locus_tag="ACFM5C_001943"
     CDS             complement(1131..1454)
                     /locus_tag="ACFM5C_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069585.1"
                     /translation="MKKCILGILTACAAMPAFADRIGDLEARLAQLEHRVAVLESGSN
                     TVKIDLFGSNSTMYVCSVTPFQKTFEASDRNEGVARQKVRQACNRETSAMFCEDEAIR
                     CRKFD"
     gene            complement(1627..2988)
                     /locus_tag="ACFM5C_001944"
     CDS             complement(1627..2988)
                     /locus_tag="ACFM5C_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HFC6069586.1"
                     /translation="MLKKWLNKMLPSGRSSKKAESKTIIPAERHNIRAEMLSFAAENV
                     IRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV
                     HVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKE
                     EILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETAAPIAE
                     SICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGK
                     MTVLALKNTDERLRADKSVSVGFVLAALMWPELERHWKSNLQQGLKPVPALSDAINTM
                     RETVERGWGVPQRFSATMREIWMFQPQFENRKGARPHKLFAQARFRAAYDFLLLRAET
                     GNADRALAEWWTAFQTASTEQRSEMTKNEAAARHEKNEGQAKKRRRRRRKPKPKVVGT
                     DWE"
BASE COUNT          750 a          933 c          769 g          738 t
ORIGIN      
        1 gtactggttt aaatctaatc cactatagat taaaatcaca caatatccaa ctattcggac
       61 cttcatatga cacataccgt ccacctgcat ttagaagaaa ccgacaactt ggcgttgcag
      121 cgtctgtgcg gttcttttga caacaacctt gatttacttg ctaaagcact cgatatccac
      181 atcagccgcc gttttgaaca tttcactttc aacggcgcat ttgcacacgc cggcaaacgc
      241 gcactgctca aactcttgga aacggcgcag acgcgcgacc taaacgacgg cgacatcagg
      301 cttgccgccg tcgaagccca aaccgaagat gccggtcatc aagaaaaaaa ccatgaccac
      361 gcctattatt tccgcaccaa gcgcggcagc atcggcggca gaacgccacg gcagaacggc
      421 tatatccgcg ccctactcaa ccacgacatc gtattcggtc tcgggccggc aggtacgggc
      481 aaaacctatc tcgccgtcgc cgccgccgtc gatgcgatgg aaaaacacca agtcgaacgc
      541 atcattttag tgcggcctgc cgtcgaagcc ggcgagaaac tgggttttct gcccggtgac
      601 ctgacccaga aagtcgatcc ctaccttcgt ccgctttatg atgccctcta tgacctgatg
      661 ggctttgacc gtgtaaccaa gctgattgaa aaaggcctga ttgaaatcgc cccgctcgcc
      721 tatatgcgcg gcaggacgct caacggcgca tacatcatcc tcgacgaagc gcaaaacacc
      781 acgcccgaac aaatgaaaat gttcctgacc cgcatcggct tcggcgcgaa agccgtcatt
      841 accggcgaca ccagccaaat cgacctgccc aaaaacatca aatcgggatt aaaagatgcg
      901 cgtgagaaac tgcacaacgt ggaagggctg tatttccaca cctttaccgg cgaagacgtt
      961 gtccggcatc ctctggtgca aaaaatcgtc gaagcctacg aatcggcaga acacgactga
     1021 cattccaatg ccgtctgaaa cccgatgcat ggaaaatcgg gcagagaaaa acagatacgg
     1081 aagccaagct ccgtatccgt atccgtttct ttatccgtcc aaccgataca tcaatcgaat
     1141 tttctgcatc ggattgcctc atcttcgcaa aacattgccg aagtttcgcg gttgcacgcc
     1201 tgacgcactt tctgccgcgc cacgccttca ttccgatcgc ttgcctcaaa cgtcttctga
     1261 aaaggcgtaa cgctgcatac atacatggtg gaatttgaac cgaaaaggtc gattttgacg
     1321 gtattgctgc cgctttccaa tacggcgaca cggtgttcca actgcgccag acgtgcttcc
     1381 aaatcgccga ttctgtcggc aaatgcaggc atggcggcac acgcggtcaa aatgcccaaa
     1441 atacattttt tcatcaattt ttccttgttt cttgaaccct gcccacccgg acatcctttt
     1501 tccgagaggc agggttagac tttatttacg gggatgaatc cccttacaaa tcaggataat
     1561 acatagaacg gcactttatg cttcatccca tgtgttgaaa cttcattgct ccttgtctgt
     1621 tgacccttat tcccaatccg ttcccacaac cttcggcttg ggtttgcgcc tgcgacggcg
     1681 gcgttttttc gcctgtcctt cgtttttttc gtgtcgggcg gcggcttcgt ttttggtcat
     1741 ctccgaccgc tgttccgtcg atgccgtctg aaacgccgtc caccactcgg caagggcgcg
     1801 gtccgcattg ccggtttcgg cgcgcaagag caggaaatca taggcggcac ggaaacgcgc
     1861 ctgtgcaaac agtttgtgcg gacgtgcgcc tttgcgattt tcaaactgcg gctggaacat
     1921 ccaaatttcg cgcatcgtgg cggaaaagcg ttgcggcacg ccccaaccgc gttcgacggt
     1981 ttcgcgcatc gtattgattg catcggacag ggcgggcacg ggtttcaaac cctgttgcag
     2041 attgcttttc caatggcgtt ccaactcggg ccacatcagg gccgccagta cgaaaccgac
     2101 cgaaaccgat ttgtcggcac gcagccgctc atcggtattt ttcagggcaa gcaccgtcat
     2161 ttttccggcg atgccgtctg aaacgcgcaa ggcattgagc agcggatgga tgtcgtccgg
     2221 tatgtcaaat ccgttcaaac gtttcagaca ctcgcgcgcg tgccctgaaa acagcagttt
     2281 cataatttcg tcgaacagcc gcgctaccgg ttcgtgcttc agacggcata tcgattcggc
     2341 aatcggtgcg gcggtttctt ccgacagatc aaagcccaat ttgctcgaca ggcggatggc
     2401 gcgcaaaatc ctgacagggt cttcctgata gcgttcggcg gcatcaccaa tcataaccag
     2461 cctgcgggcg gcaacatcgg caatcccgtt gtggaaatcc aaaatctctt ctttttcagg
     2521 atcgtaatac aaggcattgc aggtaaaatc gcgccgcatc gcatcttctt cgatgctgcc
     2581 gtaggtgttg tccttcatga ttctgccgtg cgcgttctga tgaaccttcg caccgccgcg
     2641 aaacgtcgtt acttcgataa tctccgcacc gttcatcaca tggacaatct gaaaacgcct
     2701 gccgatgatg cggctgcggc ggaagagttt gtgcacctgt tcgggcgtgg catcggttgc
     2761 gacatcgaaa tccttgggtt cgatgccgag cagcaggtcc ctgaccgcgc cgccgaccac
     2821 ataagcctga aaccccgccc ctttcaggcg gcgtatgacg ttttcggcgg caaagctcaa
     2881 catttcggca cggatgttgt gtctttcggc aggaatgatt gttttacttt ccgctttttt
     2941 actgctccga ccggaaggca gcatcttatt caaccatttt ttcagcataa atattctaac
     3001 ccgaagagcg gcatctccac gggcaaccgt gttcagacgg catcaggcgg tacgattccg
     3061 caagatgccg taaccataaa caaaaggcgt agaaactacg ccgtccgaat cacgccgccc
     3121 tcgcggcggc ggcaacgcgc cattataaca gattgccctt taaaaaaatc agaccctgct
     3181 tttgtggcgg
//
LOCUS       DAXHNP010000189         3159 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.189, whole genome shotgun sequence.
ACCESSION   DAXHNP010000189 DAXHNP010000000
VERSION     DAXHNP010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.189"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..330
                     /locus_tag="ACFM5C_001945"
     CDS             <1..330
                     /locus_tag="ACFM5C_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6069587.1"
                     /translation="RDGEDGGLLCKFFPDILACDRLPEPNPAEDLNLPSETVNVEFQK
                     SGIFQNSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCI
                     RTVSREV"
     gene            634..918
                     /locus_tag="ACFM5C_001946"
     CDS             634..918
                     /locus_tag="ACFM5C_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HFC6069588.1"
                     /translation="MKLLAALIPLLMSVAGRILTALGLMAVTYSGVDRLVAHFQQAIT
                     SSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK"
     gene            919..2106
                     /locus_tag="ACFM5C_001947"
                     /pseudo
     CDS             919..2106
                     /locus_tag="ACFM5C_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zonular occludens toxin family protein"
     gene            2321..>3159
                     /locus_tag="ACFM5C_001948"
     CDS             2321..>3159
                     /locus_tag="ACFM5C_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISNgo3 family transposase"
                     /protein_id="HFC6069589.1"
                     /translation="MNIIGLDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIK
                     GNRIRKAYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKADSN
                     LIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQHQKQIKNRLHSTEEDFIRNIHQ
                     DLIDTIQDKMEQVKIAISEQIKKQTDYNHYRNLQTIPSIGKDTASVLYAQLTEKHFKT
                     ANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINN
                     LKKA"
BASE COUNT         1030 a          691 c          727 g          711 t
ORIGIN      
        1 agggacggcg aagacggcgg ccttttgtgc aaattcttcc ccgacattct cgcttgcgac
       61 aggctgcccg agcccaatcc ggcagaagat ttaaatctgc cgtctgaaac cgtcaatgta
      121 gagtttcaga aatcaggaat ctttcaaaat tccgcacagt gtcccgcacc tgtcactttc
      181 acagtgactg tgcttgattc cagcaggcag ttcgcgttca gctttgagaa cgcatgtacc
      241 atagccgaac ggctaaggta catgcttctc gcccttgctt gggcggttgc cgcatttttc
      301 tgtatccgca cagtatcccg tgaagtctag caggcgcagc accgccgggc ttcagtaact
      361 tgtaccaagg caggaggagg acgtccagaa agatttgtaa agacggcttt atcgtcttta
      421 taaatctttt tggatacccc ttgccgcccc gccaaaagaa tacactctgc cgcaagggca
      481 ggtggtaagg cgcgcgcttt ttgcgccgtt ccccctgccc ccgcggcgtc gcaagtgaga
      541 ctgggggtgt gggggctagt ccccgcaaaa tctttcagat taagaaacat ttttttaatg
      601 aggcaaccgt gccttttaag aaagggatag caaatgaaat tgttggccgc attgattccg
      661 ctgttgatga gcgtcgcagg ccgtatattg actgcattag gcttgatggc tgttacttat
      721 tcgggtgtag atagattggt agcccatttt cagcaggcga taaccagtag cataacgggc
      781 gcgcctcaag cgatgttgca gctcttttat ataagcggtg gcggcaccgt tcttaatatc
      841 ctgtttggcg cgatcgcctt tattctgtca ttcaaacaaa tgacaaaact agcaacctca
      901 atcgggaaga aaaaataaat ggcagagatc tgtttgataa ccggcacgcc cggttcaggg
      961 aaaacattaa aaatggtttc catgatggcg aatgatgaaa tgtttaagcc tgatgaaaac
     1021 ggcatacgcc gtaaagtatt tacgaacata aaaggcttga aaataccgca cacctacata
     1081 gaaacggacg caaaaaagct gccgaaatcg acagatgagc agctatcggc gcatgatatg
     1141 tacgaatgga taaagaagcc cgaaaatatc gggtctattg tcattgtaga tgaagctcaa
     1201 gacgtatggc cggcacgctc ggcaggttca aaaatccctg aaaatgtcca atggctgaat
     1261 acgcacagac atcagggcat tgatatattt gttttgactc aaggtcctaa gcttctagat
     1321 caaaatctta gaacgcttgt acggaaacat taccacatcg cttcaaacaa gatgggtatg
     1381 cgtacgcttt tagaatggaa aatatgcgcg gacgatcccg taaaaatggc atcaagcgca
     1441 ttctccagta tctatacact ggataaaaaa gtttatgact tgtacgaatc agcggaagtt
     1501 cataccgtaa ataaggtcaa gcggtcaaag tggttttaca ctctgccagt aatagtattg
     1561 ctgattcccg tgtttgtcgg cctgtcctat aaaatgttga gcagttacgg aaaaaaacag
     1621 gaagaacccg cagcacaaga atcggcggca acagaacagc aggcagtact tccggataaa
     1681 acagaaggcg agccggtaaa taacggcaac cttaccgcag atatgtttgt tccgacattg
     1741 tccgaaaaac ccgaaagcaa gccgatttat aacggtgtaa ggcaggtaag aacctttgaa
     1801 tatatagcag gctgtataga aggcggaaga accggatgcg cctgctattc gcatcaaggg
     1861 acggcattga aagaagtgac ggagttgatg tgcaaggact atgtaaaaaa cggcttgccg
     1921 tttaacccat acaaagaaga aagccaaggg caggaagttc agcaaagcgc gcagcaacat
     1981 tcggacaggg cgcaagttgc cacattgggc ggaaaaccgt agcagaacct aatgtacgat
     2041 aattgggaag aacgcgggaa accgtttgaa ggaatcggcg ggggcgtggt cggatcggca
     2101 aactgaagaa aacggcaaga gagaaaaaag acccgtaaac cgtttgaata tagacggttt
     2161 acgggtcttt gtttcgcgca aagcaagggc taaggcagtc aggcagcaaa tcccgcaatg
     2221 tattaaaaca gacgcgtaga aatgccggct gcctttatcc atcctcaaaa ttgaatatca
     2281 tcctagccgt atcaaggctg tataaataag gaaaatacca atgaatataa tcgggctgga
     2341 catctcaaag gataccatag acgcaacatt gcataaaaca aacggaagta tccattacat
     2401 taaatttaag aataatgatg atggattaaa acagtttaga ttgtggataa agggaaacag
     2461 aatcagaaaa gcctatatcg gcatggaggc aacaggcatc tattacgaaa aggcagcaga
     2521 tatgctttct tcctactata ccgtttacgt tatcaatccc ttaaaaatca aggactacgg
     2581 gaaaagcagg tttaaccgta ccaaaaccga caaagcagat tcaaacctga tagcagatta
     2641 cataaaaagg catcaagata cattgatacc gtatcagata cccaaaaaca aagcactgca
     2701 aaaactgatt aaccttaaaa atcaattaca gcaacatcag aagcaaatta aaaaccgtct
     2761 tcatagcact gaagaagact tcataaggaa catacatcaa gacttgatag ataccataca
     2821 ggacaagatg gaacaggtaa aaatagccat atccgaacaa atcaaaaaac aaacggacta
     2881 taaccattac cgcaatcttc aaaccatccc gagcataggc aaagacaccg catcagttct
     2941 ttatgcgcaa ctgacagaaa aacattttaa aaccgcaaac cagtttgtat cctatgccgg
     3001 attaagtccc gccatcatac aatcagggac aagcgtaaga ggtcggggca gattgagccg
     3061 atacggaaac agacgattaa aaagtacgct gtatatgccc gccctttgtg cttaccgttt
     3121 taacgcattt ccgaaattaa taaataatct gaaaaaagc
//
LOCUS       DAXHNP010000190         3112 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.190, whole genome shotgun sequence.
ACCESSION   DAXHNP010000190 DAXHNP010000000
VERSION     DAXHNP010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.190"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..212)
                     /locus_tag="ACFM5C_001949"
     CDS             complement(<1..212)
                     /locus_tag="ACFM5C_001949"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069590.1"
                     /translation="MLPTRKTARKIQARHIALPFSGKPQFYRPQERLSKQAQATPPGH
                     FRFHRLSVVRIMQQHHQRITLFGRQQA"
     gene            272..895
                     /locus_tag="ACFM5C_001950"
     CDS             272..895
                     /locus_tag="ACFM5C_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFC6069591.1"
                     /translation="MKKPTDTLPVNLQRRRLLCAAGALLLSPLAHAGAQREETLADDV
                     ASVMRSSVGSVNPPRLVFDNPKEGERWLSAMSARLARFVPEEEERRRLLVNIQYESSR
                     AGLDTQIVLGLIEVESAFRQYAISGVGARGLMQVMPFWKNYIGKPAHNLFDIRTNLRY
                     GCTILRHYRNLEKGNIVRALARFNGSLGSNKYPNAVLGAWRNRWQWR"
     gene            1006..2388
                     /locus_tag="ACFM5C_001951"
     CDS             1006..2388
                     /locus_tag="ACFM5C_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6069592.1"
                     /translation="MARDNRIQMFPHEWRASTTLSGVYALRMLGMFLVLPVLAVYAAS
                     LPGAEGNKTLVGLAMGIYGLTQALLQLPLGIASDKFGRKKTIYVGLIVFAAGSFLAAA
                     ADTLPMLVAARAIQGAGAVSAAVTALLADLTRDGVRTRAMAMIGLSIGLTFSVSLVVA
                     PVIADAVGVRGLFLLTGILTVASIGVVAWMTPDPEVSKLHEDTQAQPSRIGEVLKNRR
                     LLTLDFGIFALHAAQMALFTALPFAMTQLGLEKIQHWKVYLPSIITGLVVMVPLIIVG
                     ETRNKLKQVFVLGIVCIAAAQLGLLSGMRSVGLITAYLVVYFIGFNVLEASLPSMVSK
                     IAPSDLKGTAMGVYNTMQSLGLFAGGAAGGLLFQKYGFSGVFAFCSILMLLWLVIAVL
                     SPAPKPVKNLSYPVGGVWQGNRDGLQRALSELEGVEDIGFSFDGQTVYLKVLQKGFDQ
                     AAAEKIITGV"
     gene            2392..2916
                     /locus_tag="ACFM5C_001952"
     CDS             2392..2916
                     /locus_tag="ACFM5C_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFC6069593.1"
                     /translation="MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQ
                     RVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANE
                     MKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
                     AAAPVEDIDDDIPF"
BASE COUNT          620 a          840 c          947 g          705 t
ORIGIN      
        1 gcctgctgcc gcccgaaaag cgtgatgcgc tgatggtgct gctgcataat ccggacgacg
       61 gataaccggt gaaaacggaa atgcccgggc ggtgttgcct gtgcctgttt ggacaagcgt
      121 tcttgagggc ggtagaattg aggtttgccc gaaaagggca gggcgatatg ccgcgcttgg
      181 attttgcgcg cggtttttcg cgttggaagc aatcattgtc tgtttgaata tttaatgccg
      241 tctgaaacgt ccggacgcgc ccccgttccc tatgaaaaaa ccgaccgata ccctacccgt
      301 taatctgcaa cgccgccgcc tgttgtgtgc cgccggtgcg ttgttgctca gtcctctggc
      361 gcacgccggc gcgcaacgtg aggaaacgct tgccgacgat gtggcttccg tgatgaggag
      421 ttctgtcggc agcgtcaatc cgccgaggct ggtgtttgac aatccgaaag agggcgaacg
      481 ttggttgtct gccatgtcgg cacgtttggc aaggttcgtc cccgaggagg aggagcggcg
      541 caggctgctg gtcaatatcc agtacgaaag cagccgggcc ggtttggata cgcagattgt
      601 gttggggctg attgaggtgg aaagcgcgtt ccgccagtat gcaatcagcg gtgtcggcgc
      661 gcgcggcctg atgcaggtta tgccgttttg gaaaaactac atcggcaaac cggcgcacaa
      721 cctgttcgac atccgcacca acctgcgtta cggctgtacc atcctgcgcc attaccggaa
      781 tcttgaaaaa ggcaacatcg tccgcgcgct tgcccgcttt aacggcagct tgggcagcaa
      841 taaatatccg aacgccgttt tgggcgcgtg gcgcaaccgc tggcagtggc gttgattttg
      901 aacccgcgcc gcaaccgaaa tacggcgaat cctgtataat ccgaaaatct gttcactgga
      961 agttcagacg gcattgcaac tgttgatgcc gtctgaaaaa atatgatggc aagagacaac
     1021 cgcatccaaa tgtttccgca cgaatggcgc gccagtacga cgctttccgg cgtgtacgcg
     1081 ctgcgtatgc tgggtatgtt cctcgtgctg cccgtattgg cggtgtatgc cgcctcgctg
     1141 cccggcgcgg aaggcaacaa aacgctggtc gggctggcaa tgggcattta cgggctgaca
     1201 caggctctgc tgcaactgcc tttgggcatc gcttccgaca agttcgggcg caagaaaacc
     1261 atttatgtcg ggctgattgt gtttgcagcg ggcagcttcc ttgccgccgc cgccgatacg
     1321 ctgcccatgc tggtcgccgc acgcgccata cagggtgcgg gagcggtcag tgcggcggtt
     1381 accgcgctgc tggcggattt gacgcgcgac ggagtacgta cccgcgcgat ggcgatgatc
     1441 ggtttgagta tcggtctgac gttttcggtc agcctcgtcg ttgcccctgt gattgccgac
     1501 gcggtgggcg tacgcggctt gtttctgctg accggtattt tgaccgttgc cagtatcggc
     1561 gtggtggcgt ggatgactcc cgacccggag gtttccaagc tgcacgaaga tacgcaggcg
     1621 cagccttcgc gcataggcga agttttgaaa aaccgtaggc tgctgacgct cgatttcggc
     1681 attttcgccc tgcacgccgc gcaaatggca ttgtttaccg cgctgccttt tgcgatgacg
     1741 cagctcggtt tggaaaaaat ccagcattgg aaagtctatc tgccctcgat cattacgggc
     1801 ttggtggtga tggttccgct gattatcgtc ggcgagacgc gcaacaagct caaacaggtt
     1861 tttgttttgg gtatcgtctg tattgcggcg gcgcagctcg gtttgctgtc cggtatgcgc
     1921 tcggtaggct tgattaccgc ttatttggtt gtttacttta tcggttttaa tgtgttggaa
     1981 gcgagcctgc cgtctatggt ttccaaaatc gcgccgtccg acctgaaggg tacggcgatg
     2041 ggtgtgtaca acacgatgca gtcgctcgga ctgtttgccg gcggcgcggc aggcggcttg
     2101 ctgtttcaaa aatacggctt ttccggcgtg tttgcctttt gcagcatatt gatgctgctg
     2161 tggctggtaa ttgccgtttt atcgcctgcg cccaagcccg tcaaaaacct cagttaccct
     2221 gtcggcggcg tgtggcaggg caatcgggac ggtttgcaac gcgccttgtc ggagcttgag
     2281 ggcgtggaag acatcggttt cagtttcgac gggcagaccg tctatcttaa agtgttgcag
     2341 aagggtttcg atcaggctgc cgctgaaaaa atcatcacag gagtttaaaa aatgtcattg
     2401 aacaaagtca tcctcatcgg ccgcctcgga cgcgatcccg aagtgcgcta tatgcccaac
     2461 ggcgaggcgg tgtgtaattt cagcgtcgcc accagcgaaa cttggaacga ccgcaacggc
     2521 caacgtgtag agcgtactga gtggcacaac atcacgatgt accgcaaact ggcggaaatt
     2581 gccgggcaat acctcaaaaa aggcgggctg gtttatctgg aaggcagaat ccaaagccgc
     2641 aaataccaag gcaaagacgg catcgaacgc accgcttacg atattgtcgc caacgaaatg
     2701 aaaatgttgg gcgggcgcaa tgaaaacagc ggcggtgcgc cttacgagga aggttacggt
     2761 cagagtcagg aggcttacca acgccccgcg cagcaaagcc ggcagcccgc ctccgacgcg
     2821 ccgtcccatc cccaagaagc accagccgcg ccgcgccgcc aacccgtgcc tgccgccgcc
     2881 ccggtcgagg acattgacga cgatatcccg ttctgaattt tacggccgga catcctcgcg
     2941 gagggaaatc ataaaggacg gagaaacctt aaaccttacg gggcagggtt tctctttttt
     3001 gcatttgggc cggcttgttg ccgccctttg cgttgggcgg aacgttgcga ttgcgccgtt
     3061 cgggcgtttt gaggcagtga tgcctgccgc acgtccccgc tgttttcaga cg
//
LOCUS       DAXHNP010000191         3062 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.191, whole genome shotgun sequence.
ACCESSION   DAXHNP010000191 DAXHNP010000000
VERSION     DAXHNP010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.191"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            244..2469
                     /locus_tag="ACFM5C_001953"
     CDS             244..2469
                     /locus_tag="ACFM5C_001953"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFC6069594.1"
                     /translation="MTQKSTIIYTHTDEAPALATQSLLPIVQAFARHADIDVKTADIS
                     LSGRILAAFPEYLTEAQRVPDALAELGELVKQPDANVIKLPNISASVPQLTAAIKELQ
                     SKGFAVPDYPADPQTDEEKAVRERYDRIKGSAVNPVLREGNSDRRAPKAVKNFAKKNP
                     HSMGAWAKDSKTHVATMQSGDFFHNEQSVTVPEATSVSIVFTDKQGNKKELRAPVALK
                     AGEIIDATVMSKKALLAFLAEQVKDAKAKGVLFSLHMKATMMKVSDPIIFGHAVKVFF
                     APVFEKFGGKLAAAGVNVNNGFGNLLANLDKLDADTRAAVEAEIAAVYAANPDLAMVD
                     SDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKNGKAQDTKAVIPDSSYAGVYQATID
                     FCREHGAFDPTTMGTVPNVGLMAQAAEEYGSHNKTFEIEADGQVQVVDAAGKVLMQHD
                     VEAGDIWRMCQTKDAPVKDWVQLAVNRARLSNTPAVFWLDENRPHDKSLLAKVKAYLA
                     ELDTNGLDIRVLAPEEAAKFSLGRLKNGEDTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGMFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAVSFEHLAQKTGN
                     TKAQVLADTLDAATEKLLLNDKSPKRKTGELDNRGSHFYLTLYWAQELAAQDKDAELK
                     AAFAPLAKSLAENEAKIVEELSAVQGKAVDIGGYYAANPEKAAQAMRPSATFNQALST
                     L"
     gene            2612..2920
                     /locus_tag="ACFM5C_001954"
     CDS             2612..2920
                     /locus_tag="ACFM5C_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069595.1"
                     /translation="MKTVPTILISILLATALPASAHGIHKSKPLTMDELPPICQQYFK
                     RAETCYNKAGNKANFARNNTKFLFQALPAADLGQRKQMCQIAMDSFAEKTRISNSNAV
                     "
     gene            2910..3062
                     /locus_tag="ACFM5C_001955"
     CDS             2910..3062
                     /locus_tag="ACFM5C_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069596.1"
                     /translation="MPSETMISDGILTSKRTSLIKPAFPASLTRTGLNEVTALTIMAS
                     SHSQKL"
BASE COUNT          875 a          918 c          676 g          593 t
ORIGIN      
        1 aatttaaacc actataaaat caatttcacc gaaaatatgc cgccgcacat caggcacagc
       61 acctccgaca ccgccgccaa aagcgggaaa accatttccc ccttcctttc acgtcgccgc
      121 gttcaaacac gccaagatcg aacaaagcgc gaacaaagcc gccaaaatat gccataatag
      181 ccacgcacat tccccgcgca atgtgttcca aaagaaaaaa ccaacctaca agagaataat
      241 cctatgactc aaaaatccac cattatttat acccataccg acgaagcccc cgcgctggcg
      301 acccaatcgc tgctgccgat tgtgcaggct tttgcccgcc acgccgatat tgatgtcaaa
      361 actgccgaca tttccctgtc cggccgtatt ttggcggcat ttcccgaata tctgaccgaa
      421 gcgcagcgcg tacctgatgc gcttgccgaa ttgggcgaac tggtgaaaca acccgatgca
      481 aacgtaatca aactgccgaa catcagcgca tccgtaccgc aactgactgc cgcgattaaa
      541 gaattgcagt ctaaaggctt tgccgttccc gactatcctg ccgaccctca aaccgatgaa
      601 gaaaaagccg tacgcgaacg ctacgaccgc atcaaaggca gcgcggtaaa ccctgtcctg
      661 cgtgaaggca actccgaccg ccgcgccccc aaagcagtga aaaactttgc caaaaaaaat
      721 ccgcacagta tgggcgcgtg ggcgaaagac tccaaaaccc acgttgccac catgcaaagc
      781 ggcgactttt tccataacga acaatccgtt accgtacccg aagcgacttc cgtatccatc
      841 gtgttcaccg acaaacaagg caacaaaaaa gagctgcgcg cgcctgttgc cctgaaagcc
      901 ggcgaaatca tcgacgcaac cgtgatgagc aaaaaagccc tgctcgcctt ccttgccgaa
      961 caagtgaaag acgcgaaggc aaaaggcgta ttgttctcac tgcatatgaa agccacgatg
     1021 atgaaagtgt ccgacccgat tatcttcgga cacgccgtca aagtgttctt cgcgcctgta
     1081 tttgaaaaat tcggcggcaa actggctgcc gcaggtgtca acgtcaacaa cggtttcggc
     1141 aacctgcttg ccaatctgga caaactggat gcggacaccc gcgccgccgt cgaagctgaa
     1201 atcgccgccg tttacgccgc caaccctgat ttggcgatgg ttgattccga caaaggcatc
     1261 accaacctgc acgttcccag cgatgtcatc gtcgacgctt ctatgcctgc gatgattcgt
     1321 aattccggcc gtatgtggga caaaaacggc aaagcacaag acaccaaagc cgtgattccc
     1381 gacagcagct atgccggcgt ttaccaagca accatcgact tctgccgcga acacggcgca
     1441 tttgacccga caaccatggg tactgtgccc aacgtcggac tgatggcgca agcggcggaa
     1501 gaatacggct cgcacaacaa aacctttgaa atcgaagccg acggtcaggt tcaagtagtt
     1561 gatgcggcag gaaaagtcct gatgcagcac gacgttgaag caggcgacat ctggcgtatg
     1621 tgccaaacca aagacgctcc ggttaaagac tgggtacaac tcgccgtcaa ccgcgcccgc
     1681 ctgagcaata cgcccgccgt gttctggctc gacgaaaacc gtccgcatga caagagcctg
     1741 ctcgccaagg ttaaagccta ccttgccgaa ctggatacca acggcctcga catccgtgtc
     1801 ctcgctcccg aagaagccgc caagttcagc ctgggccgtc tgaaaaacgg cgaagacacc
     1861 atctccgtaa ccggtaatgt cttgcgcgac tacctgaccg acttgttccc gattttggaa
     1921 ctcggcacaa gcgcgaaaat gctgtctatc gttccattga tgaacggcgg cggtatgttt
     1981 gaaaccggcg cgggcggttc tgcaccgaaa cacgtccaac aattccttga agaaaaccac
     2041 ttgcgttggg actctttggg cgaattcctc gcgctcgccg tatcgtttga acatttggca
     2101 caaaaaaccg gcaacaccaa agcccaagtc ctcgccgaca ctttggatgc cgccaccgaa
     2161 aaactgctgc taaacgacaa atcgcccaaa cgcaaaaccg gcgaactcga caaccgcggc
     2221 agccatttct acctcaccct ctactgggcg caagaattgg cggcgcaaga caaagatgcc
     2281 gaattgaaag ccgcatttgc gccgttagcc aaatcgttgg cggaaaacga agccaaaatc
     2341 gttgaagaac tctctgccgt acaaggcaaa gcggtcgaca tcggcggcta ctacgccgcc
     2401 aatcctgaaa aagcggcaca agcgatgcgc ccaagcgcaa cctttaatca ggcactaagc
     2461 accttataag cacaaaggta aaaatgccgt ctgaacattc gtcgttcaga cggcattagt
     2521 tattcctatc tgcctgatta tgattaaacg ccgcacccat tggatataaa tcatataatc
     2581 tttagttttt accctaggaa aagacaataa tatgaaaact gttccaacca tcctgattag
     2641 catccttttg gcaaccgccc ttcctgcatc cgcacacggt atacataaga gcaagcccct
     2701 gactatggac gagctgccgc cgatttgcca acaatatttc aaacgcgccg aaacctgtta
     2761 caacaaagcc ggcaacaagg caaattttgc acgcaacaac actaaattcc tattccaagc
     2821 cctgcctgct gccgatttgg gacagcgtaa gcaaatgtgc caaatcgcta tggattcgtt
     2881 tgcagaaaaa acccgcatca gcaatagcaa tgccgtctga aacaatgatt tcagacggca
     2941 ttctcacatc aaaacgcact agcttgataa aacccgcctt ccccgcatcc ctgacccgaa
     3001 caggattaaa cgaagtaacg gctttaacca ttatggcaag ttcccattct caaaaattat
     3061 ag
//
LOCUS       DAXHNP010000192         3028 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.192, whole genome shotgun sequence.
ACCESSION   DAXHNP010000192 DAXHNP010000000
VERSION     DAXHNP010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.192"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(570..1340)
                     /gene="xth"
                     /locus_tag="ACFM5C_001956"
     CDS             complement(570..1340)
                     /gene="xth"
                     /locus_tag="ACFM5C_001956"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6069597.1"
                     /translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
                     AALQMMGWHCVWSGQKTYNGVAIVSRNAPEDVHIGLPALPDDPQRRVIAATVGGVRVI
                     NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPE
                     KWHEKIHCSSVERQWFKNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDH
                     ILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW"
     gene            complement(1400..1681)
                     /locus_tag="ACFM5C_001957"
                     /pseudo
     CDS             complement(1400..1681)
                     /locus_tag="ACFM5C_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709912.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR/SmtB family transcription factor"
     gene            complement(1820..2059)
                     /locus_tag="ACFM5C_001958"
     CDS             complement(1820..2059)
                     /locus_tag="ACFM5C_001958"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069598.1"
                     /translation="MSDKEPPNRNPVIASRRKCRLKYSSDGIFREGRDALEKTAFQAG
                     ILFARQRGGIGRAGERTGAAVLCCLKARLYACLQK"
     gene            complement(2087..2968)
                     /gene="nadC"
                     /locus_tag="ACFM5C_001959"
     CDS             complement(2087..2968)
                     /gene="nadC"
                     /locus_tag="ACFM5C_001959"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HFC6069599.1"
                     /translation="MPSENTLFPLPDTLLRPMVEQALSEDLGRRGDITSAAVIAPEKT
                     AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQVVRAGQTLAAVEGNARAL
                     LAAERTALNYLTHLSGIATATARAVAEVAEYGTDIVCSRKTIPLLRVLQKYAVRAGGG
                     VNHRMGLDDAVLIKDNHLAYCGSIAQAVRQAKQAVGPLTCVEIEVDTLAQLDEAIAAG
                     AERILLDNMDDETLKEAANRCHTQTAHPHTVYCEASGGIGFDRLKRVAQTGVDGIALG
                     YLTHSSRSLDIGLDFLA"
BASE COUNT          690 a          769 c          796 g          773 t
ORIGIN      
        1 aaaggatata aatactaact tgccattgtc aaaccacata gatttatata gtggattaaa
       61 tttaaaccag tacgtcgttg cctcgccttg ccgtactatt tgtactgtct gcggcttcgt
      121 cgccttgtcc tgatttttgt taatccacta tagttattgc ctttgggaga atcaattctg
      181 acagcacata acataggttc atctttacag tcgttatatt gggtttcatc aaactcaact
      241 gcatagcaca ataaaggcaa taggaaaaaa aggagattaa tttattacta tacataaggc
      301 agcctgacta ttcattctaa aataaatccg gtttttaata tttgattctg ctccggatta
      361 tatacataat aaattttact gctccaaaat ctgatattaa ccctatggat ttcataaatt
      421 tttcagaaaa ataggctgtg cttgaacaat ccgccgactc cggctgtttg tcagggaaaa
      481 ggcaattatt ttcggttagt cagcagccta tcctattgaa tcacttaaag atatggatgt
      541 ttgtcaacgc catatcaaaa cacggtcttt taccaatcga attctgccgt caccggcgcg
      601 tggtcgctcg gacgctccag cgcgcgcgtc tccaaatcaa cgcggacatc cttcaacgcc
      661 gccgccatcg caggcgacac caaaatatgg tcgatacgca ggcccagttt gcgttggaac
      721 atcgcgccgc gatagtcgaa ccaggtatag aacgcgcctt cgggatggac ttggcgcagg
      781 ctgtcggtca gtcccaaatc cagcaggttt ttgaaccact gccgttcgac ggacgaacag
      841 tggatttttt cgtgccattt ttcagggtcg taacagtccg catcggcagg cgcgatattg
      901 aaatcgccca gtagcaccag tttgccgtag cgggtcattt catcgcggac aaattcggtt
      961 aacgcggcaa accattgttc tttatatttg aatttcgggc tgtcgagggc ttcgccgttg
     1021 acgcaataga cattgatgac gcgcacaccg ccgacggttg ccgcaatcac gcgccgttgc
     1081 ggatcgtccg gcagcgcggg cagcccgata tgcacgtctt ccggcgcgtt gcggctgacg
     1141 attgccacgc cgttgtaggt tttctgcccg ctccaaacac agtgccagcc catcatttgc
     1201 aaagcggcgg ccggaaattt gtcctgatcg agtttgagtt cctgcaaaac caaaatatcg
     1261 ggcggattgt cggcaagcag gttttgcacc tgcggcagcc gcacattgag cgaattgacg
     1321 ttccaagtgg tgattttcat aacatttccg aaaaatgccg tctgaaacgt tcagacggca
     1381 aaaggaaagg attttaacac tataccgcgc gtttgttttc caaatcgcgg attgtccgca
     1441 gaatcgttgc cgcgtcttcg gaaatcaggc ggtattcgat aatgcggtgc taacgcgtaa
     1501 agtccaccag accttccacg cgcagtcggc tcaaatggtt ggaaaccgct gtcgcaggca
     1561 tggacaggga ttcggacagc tcggcaatat tgcaatcgcc gtccaacagt tggagcagta
     1621 tcgccatacg ttcgggatgc gccataagtt tgagtatggt gtggagcggt attgtgttca
     1681 tcggtattcc taaaaccttt tccgcccgcc aagcggattg acgggcggca gatatggatg
     1741 attgtgatta tctttataaa ttatattata aatcaattat ttatatatga ttgtacagga
     1801 ttgtatgttc cttttaccac tatttttgca aacacgcgta aaggcgggct ttcagacagc
     1861 ataaaactgc cgcgcccgtc ctttcccctg ccctgccgat gcctccgcgc tgtcgggcaa
     1921 acaaaatacc tgcctgaaac gctgtttttt ctaaagcatc acgaccttca cgaaaaatgc
     1981 cgtctgaaga atatttcaga cggcatttcc tccttgaggc aataaccgga ttacggttag
     2041 gcggttcctt gtctgacata tcagacaact gccgacaccc taaaactcat gccaagaaat
     2101 ccaaacctat gtccaacgaa cggctgctgt gggtcagata gccgagagcg atgccgtcca
     2161 cgccggtttg cgccacgcgc ttcagtcggt cgaagccgat gccgcccgat gcttcgcaat
     2221 agacggtgtg ggggtgggcg gtttgcgtgt ggcagcggtt tgccgcttct ttcagggttt
     2281 cgtcgtccat gttgtccagc aaaatccgtt ccgcgcccgc tgcgatggct tcgtccagtt
     2341 gtgccaacgt gtccacttcg atttctacac aagtcaacgg tccgaccgcc tgttttgcct
     2401 gccgaacggc ttgggcgatg ctgccgcaat aggcgaggtg gttgtctttg atgagcacgg
     2461 cgtcgtccaa gcccatgcgg tggttcacgc cgccgcctgc cctgacggcg tatttttgca
     2521 ggacgcgcag cagggggatg gttttgcggc tgcacacgat gtctgtaccg tattcggcga
     2581 cttcggcaac ggcacgcgcg gtggcggtgg cgatgccgct taagtgcgtg aggtagttga
     2641 gcgcggtgcg ttcggcggcg agcagcgcgc gggcgttgcc ttcgacggcg gcaagcgtct
     2701 gacctgcgcg gacgacttgc ccgtctcgga tttcggcttg gaagcgaacg gacggatcca
     2761 tcgtctgaaa ggcgaggcgc gccaagtcca tgccggcgat aacgccgtct tcgcggctga
     2821 cgaggaagag tttggcggtt ttttcggggg cgataacggc ggcggacgta atatcgccgc
     2881 gcctgcccaa atcttcgctc aaggcttgtt ccaccatggg gcgcaacagg gtgtcgggca
     2941 gggggaagag ggtgttttca gacggcatgg tgtttccttt gttgaaaaag attgatattg
     3001 cccgatgggg caaaacttca ttttatag
//
LOCUS       DAXHNP010000193         3024 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.193, whole genome shotgun sequence.
ACCESSION   DAXHNP010000193 DAXHNP010000000
VERSION     DAXHNP010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.193"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..538
                     /locus_tag="ACFM5C_001960"
     CDS             <1..538
                     /locus_tag="ACFM5C_001960"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6069600.1"
                     /translation="FRSKTVRLFYLGTLSYSYDVETVCKGVRKLLDDGENVELHIMGG
                     GPDLEKLKQYENRAIKFYGYLPYSEMMSIAKGCDIAVNAIHSHAMQSVTNKLSDYMAL
                     QKPILNSQNNAEVLDLMNLLPHENYRSGDVDGFVQAAKDILKRKSDPVQSDEIVRRFK
                     RDVAYQKIVNLIERLAHE"
     gene            531..1058
                     /locus_tag="ACFM5C_001961"
                     /pseudo
     CDS             531..1058
                     /locus_tag="ACFM5C_001961"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
     gene            1107..2108
                     /locus_tag="ACFM5C_001962"
     CDS             1107..2108
                     /locus_tag="ACFM5C_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HFC6069601.1"
                     /translation="MPYFTGNQTNEKNNILILSAGRRVELVQDFQTEAARFSDGISVF
                     ATDLNPRMSSACHVSDGSFEVPPISADSYIDSIFNLAVRENIGLIIPTIDTELQKLAD
                     ERERFEAASVHIVVSDSDFIAQCRDKRKTATLFARYGIRSPEIYDRKKLVFPCFAKPY
                     DGSRAIGAKRIDTPADLTPEVLADTKLMFCQFIDIENKFSEFTVDMYYDRQCRLKCAI
                     PRKRLEVRSGEISKGVTCKNSLYQTLLEKMSVLQGARGCITAQFFYNEETGEFYGVEI
                     NPRFGGGFPLTYAAGGNYPSRLMREYLGDEEIPFSDDWENNLIMLRYDAKVLVHEND"
     gene            2095..2781
                     /locus_tag="ACFM5C_001963"
     CDS             2095..2781
                     /locus_tag="ACFM5C_001963"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6069602.1"
                     /translation="MKTINPETTVIVFDLDDTLYSEYEYKLSGIRSVIDTVAALYPDW
                     NSDNLWRNIDPDGKDWLDKLCRHCGFNESEKQVLLWQYRLHRPTLTPYAPPDFLSELT
                     APFAARALITDGRSLTQRLKLEALGLSSLFDDILISEACSSEKPDGKRFRHLQDKYAD
                     KAGCFIYIGDNISKDFIAPNTLGWITIGLLPSGQNIHRHQPESFNTEYHPDFWVNSLQ
                     DLVPIIDSNT"
BASE COUNT          783 a          842 c          699 g          700 t
ORIGIN      
        1 attccgctcc aaaaccgtcc gccttttcta cttgggcacg ctcagttaca gctacgacgt
       61 ggaaaccgtg tgcaaaggtg ttcggaaact tttagacgac ggcgaaaacg tcgaattgca
      121 cattatgggc ggaggacccg atttggagaa actcaaacaa tatgaaaatc gcgccatcaa
      181 gttttacggt tatttaccct attctgaaat gatgtcgatt gccaaaggct gcgacattgc
      241 cgtcaacgcc atccatagcc acgccatgca gtcggttacc aacaaactct ccgactatat
      301 ggctttgcaa aaaccgattc tgaacagtca gaacaatgcc gaagtcctcg acctcatgaa
      361 tctgctgccg cacgaaaact accgttccgg cgatgtggac ggtttcgttc aagccgccaa
      421 agatattttg aagcgcaaaa gcgatcctgt tcagtccgac gaaatcgtcc gccgcttcaa
      481 acgcgatgtg gcgtatcaga aaatcgtcaa cctgattgaa agattagctc atgaataaat
      541 ttttcaaacg cctgttcgac atcatcgcct ccgcatcggg gctgattgtc ctctcacccg
      601 ttttcctgat tttggcgtac ctcatccgca agaatctagg ttcgcccgtc ttcttcattc
      661 aagaacgccc cggaaaggac ggaaaacctt ttaaaatggt caaattccgt tccatgcgcg
      721 acgcgcttga ttcagacggc attccgctgc ccgacagcga gcggctcaca cccttcggca
      781 aaaaactgcg tgccgctagt ttggacgaac tgcctgaatt atggaatgtc ttaaaaggcg
      841 acatgagcct ggtcggcccg cgcccgcttt tgacgggcta cctgccgctt tataacgact
      901 tccaaaaccg ccgccacgaa atgaaaccgg gcattaccgg ctgggcgcag gtcaacgggc
      961 gcaacgcgct ttcgtgggac gaaaagttcg cctgcgatgt ttggtacacc gacaacttca
     1021 gcttttggct ggatatgaaa atcctgtttt tgacagtcaa aaaagtcttg atcaaagaag
     1081 gcatttcggc ggaaggggaa gccactatgc cttatttcac tggaaatcaa actaatgaaa
     1141 aaaataatat actgattctg tcggcaggtc gccgtgtcga attggtgcag gacttccaaa
     1201 ccgaagccgc acgtttttca gacggcatca gcgtttttgc cactgacctc aacccccgca
     1261 tgtcttctgc ctgccatgtt tcggacggtt catttgaagt gccgccgatt agtgccgatt
     1321 catatatcga cagcattttc aatctggcgg tacgcgaaaa tatcggttta atcatcccaa
     1381 ccatagacac cgaactgcaa aagctggcag acgagcgcga acgctttgaa gcggcaagtg
     1441 tccacatcgt cgtttccgat tcggacttca tcgcacaatg ccgcgacaaa cggaaaaccg
     1501 ccaccttgtt tgcccgctac ggcatacgct cacccgaaat ttacgaccgc aagaagttgg
     1561 ttttcccttg cttcgccaag ccttatgacg gcagccgcgc catcggtgca aaacggattg
     1621 acacacctgc cgacctgaca ccggaagtct tggcagacac caaattaatg ttctgtcagt
     1681 ttatcgacat cgaaaataaa ttttccgagt ttaccgtcga tatgtattac gaccgtcaat
     1741 gccgtctgaa atgcgccatc ccgcgaaaac gcttggaagt gcgctccggc gaaatcagca
     1801 aaggcgttac ctgcaaaaac agcctctacc aaacgctgct ggaaaaaatg tcggtattgc
     1861 agggcgcgcg cggctgtatc acggcgcagt tcttctacaa cgaagaaacc ggcgaattct
     1921 acggcgtgga aatcaacccc cgcttcggcg gtggcttccc gctgacgtat gccgcaggcg
     1981 gcaattatcc gagccggttg atgcgcgaat acctcggcga cgaagaaatc ccgttttcag
     2041 acgactggga aaacaacctc attatgttgc gctacgatgc caaggtcttg gttcatgaaa
     2101 acgattaatc ctgaaaccac cgtcatcgtc ttcgacttgg acgataccct gtattcggaa
     2161 tacgaataca agctctccgg tatccgttcg gtcatcgata ccgttgccgc actgtatccc
     2221 gattggaatt cagacaacct atggcgcaac atcgaccccg acggcaaaga ttggctggac
     2281 aaattgtgcc gccactgtgg ttttaatgaa tcggaaaaac aggttctttt gtggcaatac
     2341 cggctgcacc gcccgacgct gactccgtat gctccgccgg atttcctgtc cgaactgacc
     2401 gcgcccttcg ccgcacgcgc gctgattacc gacggcagaa gcctgaccca acgcctgaag
     2461 ctggaagcct tgggtctgtc ttccctgttt gacgacatcc tcatctctga agcctgctct
     2521 tcggaaaagc ccgacggcaa acgcttccgc catcttcaag acaaatatgc cgacaaggca
     2581 ggctgcttca tctatatcgg cgacaacatt tccaaagact ttatcgcgcc gaacactttg
     2641 ggctggataa ccataggatt gcttccctcc ggacagaaca tccaccgcca ccagcctgaa
     2701 agttttaaca cagaatatca tcccgacttt tgggttaact cccttcaaga tttagttcct
     2761 ataattgatt caaatactta accattacat aatcaaacat gcactcacaa tattaaaagg
     2821 actatttcat gacaaaatat tattcatggg gcgtaaacgg ctttccgccc tacgttttcg
     2881 acaccatttg gaaacgatgg aagttgaatg ggcgcggggg cggttatcgt gtgcgacatc
     2941 ccggacggca tgaccgtcgc gggcaatccg gcaaagccgc tgccgcgcaa aaaccccaag
     3001 accgggacgg cataagcgat taaa
//
LOCUS       DAXHNP010000194         2978 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.194, whole genome shotgun sequence.
ACCESSION   DAXHNP010000194 DAXHNP010000000
VERSION     DAXHNP010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.194"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            113..2878
                     /gene="tdfH"
                     /locus_tag="ACFM5C_001964"
     CDS             113..2878
                     /gene="tdfH"
                     /locus_tag="ACFM5C_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc piracy receptor TdfH"
                     /protein_id="HFC6069603.1"
                     /translation="MRSSFRLKPICFYLMGVMLYHHSYAEDAGRAGSEAQIQVLEDVH
                     VKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIR
                     GDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSA
                     GINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGAS
                     VGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQRYFVQDGQLKFNSDSGKWER
                     DLQRQQWKYPWYKKYENPQELQKYIEEHDKSWRENLAPQYDITPIDPSSLKQQSAGNL
                     FKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNSYANLNLTAAYNSGRQ
                     KYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKN
                     RFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALK
                     KDIYRLNYSTNTVGYRFGGEYTGYYGSDDEFKRAFGENSPTYREHCNQSCGIYEPVLK
                     KYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPER
                     ANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGNIPSWVSST
                     GLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNA
                     SKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYI
                     DGTNGGNTSNVRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRY
                     IDPLDAGNDAATQRYYSSFDPKDKDEDVTCNADGLCNGKYGGTSKSVLTNFARGRTFL
                     ITMSYKF"
BASE COUNT          846 a          750 c          726 g          656 t
ORIGIN      
        1 ccaattgaaa tcttcagacg gtatatcgaa tttacacttt ttaatgttta tgccgcctaa
       61 aaaaatgcta atatatttct taattgtctg actgtttatt gttgaggaaa atatgagatc
      121 ttctttccgg ttgaagccga tttgttttta tcttatgggt gttatgctat atcatcatag
      181 ttatgccgaa gatgcagggc gcgcgggcag cgaggcgcag atacaggttt tggaagatgt
      241 gcacgtcaag gcgaagcgcg taccgaaaga caaaaaagtg tttaccgatg cgcgtgccgt
      301 atcgacccgt caggatatat tcaaatccag cgaaaacctc gacaacatcg tacgcagcat
      361 acccggtgcg tttacacagc aagataaaag ctcgggcatt gtgtctttga atattcgcgg
      421 cgacagcggg ttcgggcggg tcaatacgat ggtggacggc atcacgcaga ccttttattc
      481 gacttctacc gatgcgggca gggcaggcgg ttcatctcaa ttcggtgcat ctgtcgacag
      541 caattttatt gccggactgg atgtcgtcaa aggcagcttc agcggctcgg caggcatcaa
      601 cagccttgcc ggttcggcga atctgcggac tttaggcgtg gatgacgtcg ttcagggcaa
      661 taatacctac ggcctgctgc taaaaggtct gaccggcacc aattcaacca aaggtaatgc
      721 gatggcggcg ataggtgcgc gcaaatggct ggaaagcgga gcatctgtcg gtgtgcttta
      781 cgggcacagc aggcgcagcg tggcgcaaaa ttaccgcgtg ggcggcggcg ggcagcacat
      841 cggaaatttt ggcgcggaat atctggaacg gcgcaagcaa cgatattttg tacaagacgg
      901 ccagttgaaa ttcaattccg acagcggaaa atgggagcgg gacttgcaaa gacaacagtg
      961 gaaatacccg tggtataaaa aatacgaaaa cccccaagaa ctgcaaaaat acatcgaaga
     1021 gcatgacaaa agctggcggg aaaacctggc gccgcaatac gacatcaccc ccatcgatcc
     1081 gtccagcctg aagcagcagt cggcaggtaa tctgtttaaa ttggaatacg acggcgtatt
     1141 caataaatac acggcgcaat ttcgcgattt aaacaccaaa atcggcagcc gcaaaatcat
     1201 caaccgcaat tatcaattca attacggttt atctttaaac tcatatgcca acctcaatct
     1261 gaccgcagcc tacaattcgg gcaggcagaa atatccgaaa gggtcgaagt ttacaggctg
     1321 ggggctttta aaagattttg aaacctacaa caacgcgaaa atcctcgacc tcaacaacac
     1381 cgccaccttc cggctgcccc gcgaaaccga gttgcaaacc actttgggct tcaattattt
     1441 ccacaacgaa tacggcaaaa accgctttcc tgaagaattg gggctgtttt tcgacggtcc
     1501 ggatcaggac aacgggcttt attcctattt ggggcggttt aagggcgata aagggctgct
     1561 gccccaaaaa tcaaccatcg tccaaccggc cggcagccaa tatttcaaca cgttctactt
     1621 cgatgccgcg ctcaaaaaag acatttaccg cttaaactac agcaccaata ccgtcggcta
     1681 ccgtttcggc ggcgaatata cgggctatta cggctcggat gacgaattta agcgggcatt
     1741 cggagaaaac tcgccgacat acagggaaca ttgcaaccag agctgcggaa tttatgaacc
     1801 cgtattgaaa aaatacggca aaaagcgcgc caacaaccat tcggtcagca ttagtgcgga
     1861 cttcggcgat tatttcatgc cgttcgccag ctattcgcgc acacaccgta tgcccaacat
     1921 ccaagaaatg tatttttccc aaatcggcga ctccggcgtt cacaccgcct taaaaccaga
     1981 gcgcgcaaac acttggcaat ttggcttcaa tacctataaa aaaggattgt taaaacaaga
     2041 tgatacatta ggattaaaac tggtcggcta ccgcagccgc atcgacaact acatccacaa
     2101 cgtttacggg aaatggtggg atttgaacgg gaatattccg agctgggtca gcagcaccgg
     2161 gcttgcctac accatccaac accgcaattt caaagacaaa gtacacaaac acggttttga
     2221 gttggagctg aattacgatt atgggcgttt tttcaccaac ctttcttacg cctatcaaaa
     2281 aagcacgcaa ccgaccaact tcagcgatgc gagcgaatcg cccaacaatg cgtccaaaga
     2341 agaccaactc aaacaaggtt atgggttgag cagggtttcc gccctgccgc gagattacgg
     2401 acgtttggaa gtcggtacgc gctggttggg caacaaactg actttgggcg gcgcgatgcg
     2461 ctatttcggc aagagcatcc gcgcgacggc tgaagaacgc tatatcgacg gcaccaacgg
     2521 gggaaatacc agcaatgtcc ggcaactggg caagcgttcc atcaaacaaa ccgaaaccct
     2581 tgcccgccag cctttgattt ttgattttta cgccgcttac gagccgaaga aaaaccttat
     2641 tttccgcgcc gaagtcaaaa atctgttcga caggcgttat atcgatccgc tcgatgcggg
     2701 caatgatgcg gcaacgcagc gttattacag ctcgttcgac ccgaaagaca aggacgaaga
     2761 cgtaacgtgt aatgctgatg gcttgtgcaa cggcaaatac ggcggcacaa gcaaaagcgt
     2821 attgaccaat tttgcacgcg gacgcacctt tttgataacg atgagctaca agttttaaag
     2881 gcagcccgcg ttttgtggaa aaccgcaatg ccgtctgaaa gcccttcaga cggcatttgt
     2941 ttccccaaac gcatcatcct gccgcaagcc tatgccaa
//
LOCUS       DAXHNP010000195         2967 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.195, whole genome shotgun sequence.
ACCESSION   DAXHNP010000195 DAXHNP010000000
VERSION     DAXHNP010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.195"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            121..1665
                     /gene="purF"
                     /locus_tag="ACFM5C_001965"
     CDS             121..1665
                     /gene="purF"
                     /locus_tag="ACFM5C_001965"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFC6069604.1"
                     /translation="MCGVLGLVSHEPVNQFLYDGLQMLQHRGQDAAGIATAEGGTFHM
                     HKGKGMVREVFRTRNMRDLTGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHN
                     GNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNADNIFN
                     AVAQVHRLVRGAYGVIAMIAGYGMLAFRDPYGIRPLVLGSQTDSEGRKSYAVASESVA
                     FNALTYDLERDIRPGEAVFVGFDGTMIARQCSDRAKLSPCLFEYVYFARPDSVIDGVS
                     VYQSRLDMGVSLAEKIKRELPVDGIDVVMPIPDTSRPSAMELAVHLDKPYREGLIKNR
                     YIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAG
                     ARKVYIASAAPEVRYPNVYGIDMPTREELIANGRSAAEIAAEIGADGIVFQDLGDLEA
                     VVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISIS
                     DAGDEE"
     gene            1765..2256
                     /gene="greB"
                     /locus_tag="ACFM5C_001966"
     CDS             1765..2256
                     /gene="greB"
                     /locus_tag="ACFM5C_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HFC6069605.1"
                     /translation="MSTETKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGD
                     RSENGDYLYGKRRMREIDRRIRFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDG
                     REQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI
                     KID"
     gene            2315..2941
                     /locus_tag="ACFM5C_001967"
     CDS             2315..2941
                     /locus_tag="ACFM5C_001967"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFC6069606.1"
                     /translation="MRKIRTKICGITTPEDASAAVAAGADAVGLVFFQGSSRAVDIAR
                     AKKITAALPPFVSVVALFVNESAQNIRRILAEVPIHIIQFHGDEDDTFCRQFHRPYIK
                     AIRVQTTSDIRNAADRFPDAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGG
                     LTPENVGEAVRITGAEAVDVSGGVEASKGKKDPAKVAAFIATTNRLSR"
BASE COUNT          714 a          906 c          772 g          575 t
ORIGIN      
        1 tattctccat aaacccacct atctgtcctt cgctcaaata ttgtcaacaa ttcaggcaaa
       61 aaaccaccgt ttactttata attccgtttt acccttaaac ctcgaatcgg agaagacgat
      121 atgtgcggcg tattaggttt ggtcagtcat gaacccgtga accagtttct gtacgacggc
      181 ttgcagatgt tgcagcacag ggggcaggat gcggcgggca ttgcaacggc ggaaggcggt
      241 accttccata tgcacaaagg caaaggcatg gtgcgcgaag tgttccgcac acgcaatatg
      301 cgcgatttga ccggcaacgc cggtatcgcc cacgtccgtt atcctactgc gggcaacgca
      361 ggcagcagcg cggaggcgca gcctttctac gtcagctcgc cgttcggcat cgttttggcg
      421 cacaacggca acctcaccaa cactgccgaa ctgtatgaaa acgtgtgtaa caaacacctg
      481 cgccacgtca acaccagctc cgattccgaa gtcttgctca acgtattcgc gcacgaatta
      541 cgccgcgaag tctctaaaaa cgccgacccg caccggctca atgccgacaa tattttcaac
      601 gccgttgccc aagtccaccg cctggtgcgc ggcgcatacg gtgtgattgc catgattgcg
      661 ggctacggta tgctcgcctt ccgcgaccct tacggcatcc gcccgctggt attgggttcg
      721 caaaccgaca gcgaaggcag aaaatcctat gccgtcgcct ccgaatccgt cgccttcaac
      781 gcgcttacct acgatttgga acgcgacatc cggccgggcg aagcggtatt tgtcggcttt
      841 gacggcacaa tgattgcccg ccaatgcagc gaccgtgcca aactcagccc ctgccttttt
      901 gaatatgttt attttgcccg ccccgactct gtgattgacg gcgtatccgt ttaccaatcg
      961 cgcttggata tgggcgtgtc gctggcggaa aaaatcaaac gcgagctgcc cgtggacggc
     1021 atcgatgtcg tgatgcccat tcccgacacc agccgcccca gcgcgatgga gcttgccgtc
     1081 catctcgaca aaccctaccg cgagggtttg attaaaaacc gctatatcgg ccgcaccttt
     1141 attatgcccg gacaggcgac gcgcaaaaaa tccgtgcgcc aaaaactcag cccgatggaa
     1201 accgaatttg caggcaaaag cgtgttgctg gtggacgact ccatcgtgcg cgggacgacc
     1261 agccgcgaaa tcgtcgaaat ggtacgcgcg gcgggcgcgc gcaaagtcta tatcgcctcc
     1321 gccgcgcccg aagtgcgcta tcccaatgtg tacggcattg atatgcccac gcgcgaagag
     1381 ttgattgcca acgggcgcag cgcggcggaa atcgccgccg aaatcggcgc ggacggcatc
     1441 gtatttcaag acttgggcga tttggaagcc gtcgtcaaag cactcaatcc gaaaatcgaa
     1501 tccttcgatt cgtcctgttt caacggcatt tatcagaccg gcgacatcga tgatgcctac
     1561 ctcgaccgcc tgtctgccga gaaatccggc tgcggcggtc tgaaaatcca cccgagcagg
     1621 atggaacaca gcatcagcat cagcgatgcg ggcgacgaag aataaggctt cccaaaccgc
     1681 gatgccgtct gaaatccgaa cgccgggttt tcagacggca tttcccatat cggcatcaca
     1741 tttcccgttt catccgcaca caatatgagt accgaaacca aaaactacat tacgcccgcc
     1801 ggatggcagg cattgaaaga cgagctttat caactggtca acaaagaacg ccccgaaatc
     1861 gtccaaatcg tcaactgggc ggcaggcaac ggcgaccgca gcgaaaacgg cgactatctt
     1921 tacggcaaac gccgtatgcg cgaaatcgac cgccgcatcc gtttcctgac caagcgtttg
     1981 gagtccgccg tcgtcgtcga tcccgaattg cgcgaagcga ccgaccaagt atttttcggc
     2041 gcgaccgtcg gcctgttgcg cggcgacggg cgcgagcaaa ccgtcaaaat cgtcggcatc
     2101 gatgaaatcg ataccgcgca aaacaaaatt tcttggattt cgccgttggc gcgttgcctg
     2161 attaaagcgc gcgaaggcga cgaagtggtt ttgaacacgc cggaagggcg tgaggaaatt
     2221 gaaatccttt ctgtcgaata catcaaaatc gactgatcgg gaatgccgtc tgaaacggtg
     2281 caagcgcgcc gtttcccaaa taaaggaata ccgaatgagg aaaatccgca ccaaaatctg
     2341 cggcatcacc acaccggaag acgcatcggc cgccgtagcg gcaggtgcag atgccgtcgg
     2401 gctggtcttt ttccaaggca gcagccgggc cgtcgatatt gcccgcgcca aaaaaatcac
     2461 cgccgcactg ccgccgtttg tcagcgttgt cgcccttttc gtcaacgaaa gcgcgcaaaa
     2521 catccgccgc atccttgccg aagtgccgat acacatcatc caattccacg gcgacgaaga
     2581 cgacacattc tgccgtcagt tccaccgccc ctatatcaag gccattcgtg ttcagacgac
     2641 atcagacatc cgaaacgccg ccgaccgctt ccccgacgct caggcactgc ttttcgatgc
     2701 ctaccatcct tcggaatacg gcggcaccgg acaccgcttc gactggacgc tgctggcgga
     2761 atattcgggc aaaccgtggg tacttgccgg cgggctgacc cctgaaaacg tcggcgaagc
     2821 cgtccgcatc accggagcgg aagcggtcga tgtatccggc ggcgtggaag cgtctaaagg
     2881 caaaaaagac ccagccaaag tcgccgcctt tatcgcaacc accaaccgcc tatcccgtta
     2941 aagcaacaaa aattgccgcc ggaatga
//
LOCUS       DAXHNP010000196         2918 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.196, whole genome shotgun sequence.
ACCESSION   DAXHNP010000196 DAXHNP010000000
VERSION     DAXHNP010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.196"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..955
                     /locus_tag="ACFM5C_001968"
     CDS             <1..955
                     /locus_tag="ACFM5C_001968"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6069607.1"
                     /translation="EKYFAQSLAAVVNQTWCNLDILIVDDGSTDGTLAIAKDFQKRDS
                     RIKILAQAQNSGLIPSLNIGLDELAKSGGEYIARTDADDIAAPDWIEKIVGEMEKDRS
                     IIAMGAWLEVLSEEKDGNRLARHHRHGKIWKKPTRHEDIADFFPFGNPIHNNTMIMRR
                     SVIDGGLRYNTERDWAEDYQFWYDVSKLGRLAYYPEALVKYRLHANQVSSKYSVRQHE
                     IAQGIQKTARNDFLQSMGFKTRFDSLEYRQIKAVAYELLEKHLPEEDFERARRFLYQC
                     FKRTDTLPAGAWLDFAADGRMRRLFTLRQYFGILHRLLKNR"
     gene            997..1824
                     /locus_tag="ACFM5C_001969"
     CDS             997..1824
                     /locus_tag="ACFM5C_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6069608.1"
                     /translation="MQNHVISLASAAERRAHIAATFGARGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLA
                     EDAWLKERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISK
                     KAIRFFLQHFVMLQPEQIKPIDLMMFSDFFDKEGMPVYQVSPALCAQELHYAKFHDQN
                     SALGSLIEHDRLLNRKQQRRDSPANTFKRRLIRALTKISREREKRRQRREQFIVPFQ"
     gene            1836..1931
                     /locus_tag="ACFM5C_001970"
                     /pseudo
     CDS             1836..1931
                     /locus_tag="ACFM5C_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
     gene            1973..2815
                     /locus_tag="ACFM5C_001971"
     CDS             1973..2815
                     /locus_tag="ACFM5C_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6069609.1"
                     /translation="MQNHVISLASAAERRAHIADTFGRHDIPFQFFDALMPSEELNRV
                     MAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLA
                     EDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISR
                     EAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKN
                     SMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRV
                     ISFK"
BASE COUNT          777 a          678 c          779 g          684 t
ORIGIN      
        1 agaaaaatat ttcgcccaat cattagccgc cgtcgtgaat caaacttggt gcaacttgga
       61 tattttgatt gtcgatgacg gctcgacaga cggtacgctt gccattgcca aggattttca
      121 aaagcgggac agccgtatca aaatccttgc acaagctcaa aattccggcc tgattccctc
      181 tttaaacatc gggctggacg aattggcaaa gtcggggggg gaatatattg cacgcaccga
      241 tgccgacgat attgccgccc ccgactggat tgagaaaatc gtgggcgaga tggaaaaaga
      301 ccgcagcatc atcgcgatgg gcgcgtggct ggaagtgttg tcggaagaaa aggacggcaa
      361 ccggctggcg cggcatcaca ggcacggcaa aatttggaaa aagccgaccc ggcacgaaga
      421 tattgccgac tttttccctt tcggcaaccc catacacaac aacacgatga ttatgcggcg
      481 cagtgtcatt gacggcggtt tgcgttacaa caccgagcgg gattgggcgg aagattacca
      541 attttggtac gatgtcagta aattgggcag gctggcttat tatcccgaag ccttggtcaa
      601 ataccgcctt cacgccaatc aggtttcatc caaatacagc gtccgccaac acgaaatcgc
      661 gcagggcatc caaaaaaccg ccagaaacga ttttttgcag tctatgggtt ttaaaacccg
      721 gttcgacagc cttgaatacc gccaaataaa agcagtagcg tatgaattgc tggagaaaca
      781 tttgccggaa gaagattttg aacgcgcccg ccggtttttg taccaatgct tcaaacggac
      841 ggacacgctg cccgccggcg cgtggctgga ttttgcggca gacggcagga tgcggcggct
      901 gtttaccttg aggcaatact tcggcatttt gcaccgattg ctgaaaaacc gttgaaaaac
      961 gccgctttat ccaacagaca aaaaacagga taaattatgc aaaaccacgt tatcagctta
     1021 gcttccgccg cagaacgcag ggcgcacatt gccgcaacct tcggcgcgcg cggcatcccg
     1081 tttcagtttt tcgacgcact gatgccgtct gaaaggctgg aacaggcaat ggcggaactc
     1141 gtccccggct tgtcggcgca cccctatttg agcggagtgg aaaaagcctg ctttatgagc
     1201 cacgccgtat tgtggaaaca ggcattggac gaaggtctgc cgtatatcgc cgtatttgag
     1261 gacgacgttt tactcggcga aggcgcggag aaattccttg ccgaagacgc ttggctaaaa
     1321 gaacgctttg accccgattc cgcctttatc gtccgcttgg aaacgatgtt tatgcacgtc
     1381 ctgacctcgc cctccggtgt ggcggactac tgcgggcgtg cctttccgct gttggaaagc
     1441 gaacactggg ggacggcggg ctatatcatt tccaaaaaag cgatacggtt tttcctgcaa
     1501 catttcgtaa tgttgcagcc ggaacagata aaacctatcg acttaatgat gttcagtgat
     1561 tttttcgata aggaggggat gcctgtttat caggtcagtc cggccttatg cgcccaagag
     1621 ctgcattatg ccaagtttca cgaccaaaac agcgcattgg gcagcctgat cgaacacgac
     1681 cgcctcctga accgcaaaca gcaaaggcgc gattcccccg ccaacacatt caaacgccgc
     1741 ctgatccgcg ccttgaccaa aatcagcagg gaaagggaaa aacgccggca aaggcgcgaa
     1801 cagttcattg tgcctttcca ataaaaggag gagagatgga catcgtattt gcagcagacg
     1861 gcaggatgcg gcggctgttt accttgaggc aatacttcgg cattttgcgc cgattgctga
     1921 aaaaccgttg aaaaacgccg ctttatccaa cagacaaaaa acaggataaa ttatgcaaaa
     1981 ccacgttatc agcttagctt ccgccgcaga acgcagggcg cacattgccg ataccttcgg
     2041 caggcacgac attccgtttc agtttttcga cgcactgatg ccgtctgaag aactgaatcg
     2101 ggtgatggcg gaattggtgc cgggattggc aaaacagcac ctgttgagcg aagtggaaaa
     2161 agcctgcttt atgagccacg ccgtattgtg gaaacaggca ttggatgaag gtctgcccta
     2221 tgttgccgta tttgaggatg atgtcctgct tggcaaagac gcagaaaagt tccttgccga
     2281 agatacttgg ttggaagagc gttttgataa ggattctgcc tttatcgttc gtttggaaac
     2341 gatgtttgcg aaagttattg tcagaccgga taaagtcctg aattatgaga accggtcatt
     2401 tcctttgctg gagagcgaac attgggggac ggctggctat atcatttcgc gtgaggcgat
     2461 gcggtttttc ttggaaaggt ttgccgtttt gccggcagag tggattaaag cggtagattg
     2521 gatgatgttt acttatttct ttgataagga ggggatgcct gtttatcagg ttaatcccgc
     2581 cttatgtacc caagaattgc attatgccaa gttcctcagt aaaaacagta tgttgggtag
     2641 cgatttggaa aaagataggg aacaagaaag aagacaccgc cgttcgttga aggtgatgtt
     2701 tgacttgaag cgtgctttgg gtaaattcgg tagagaaaag aagaaaagaa tggagcgtca
     2761 aaggcaggcg gagcttgaga aagcttacgg caggcgggtc atatcgttca aatagtttgt
     2821 gtaaaatata gcggattaaa attagaaatg gatacactgt cattcccgcg aaagtgggaa
     2881 tccagtccgt tgagtttcag tcatttccga taaatcac
//
LOCUS       DAXHNP010000197         2883 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.197, whole genome shotgun sequence.
ACCESSION   DAXHNP010000197 DAXHNP010000000
VERSION     DAXHNP010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.197"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(97..573)
                     /gene="greA"
                     /locus_tag="ACFM5C_001972"
     CDS             complement(97..573)
                     /gene="greA"
                     /locus_tag="ACFM5C_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFC6069610.1"
                     /translation="MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSE
                     NAEYEAAKERQGFIEGRISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEH
                     VTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI"
     gene            968..2269
                     /gene="aroA"
                     /locus_tag="ACFM5C_001973"
     CDS             968..2269
                     /gene="aroA"
                     /locus_tag="ACFM5C_001973"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFC6069611.1"
                     /translation="MTESVRLPVARLKPSTVALPGSKSISNRTLLLAALSDNACEIHS
                     LLKSDDTDRMLEALDKLGVQIEYLAEDRLKVHGTGGRFPNRTADLFLGNAGTAFRPLT
                     AALAVLGGDYHLHGVPRMHERPIGDLADALRIAGADVEYLGKEHYPPLHIGKRQDNGE
                     RVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVAN
                     ENYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVRVTGIGANSIQGDVA
                     FARELEKIGADVVWGENFVEVSRPKERAVQSFDLDANHIPDAAMTLAIVALATGQTCT
                     LRNIGSWRVKETDRIAAMANELRKLGAKVVEEAEAIHITPPKTLTPDAVIDTYDDHRM
                     AMCFSLVSLLGVPVVINDPKCTHKTFPTYFDVFSSLTETTE"
     gene            complement(2312..2845)
                     /locus_tag="ACFM5C_001974"
     CDS             complement(2312..2845)
                     /locus_tag="ACFM5C_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6069612.1"
                     /translation="MFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRI
                     SHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTAR
                     DMAAASRKIPDSRLKAGDLVFFNTGGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLS
                     TPFYAKNYLGAHTFFTE"
BASE COUNT          606 a          791 c          775 g          711 t
ORIGIN      
        1 ctatttgtac tgtctgcggc ttcgtcgcct tgtcctgatt tttgttaatc cactataatt
       61 tcctgcgtgt gtcgggtgta tcgaaatcaa gccgaatcaa atatatcgga cttcgataat
      121 gtcgtattcg cgcacgccgc ccggggcttg gacttccgcc gtatccccct cttccttgcc
      181 gattaaggcg cgggcgatgg gtgagccgac atagattttg ccctgtttga tgtcggcttc
      241 gtcttcgccg acaatttggt aggtaacgtg ttcttccgtt tccaaatctt ccagcgtaac
      301 cgtcgtaccg aacacgattt tgccttcggc gtggatttcg gtcggattga tgatgtgggc
      361 aacggaaagt ttgtgttcca actcggaaat gcggccctcg ataaaacctt ggcgttcttt
      421 ggcggcttca tattcggcgt tttcggacaa atcgccgtgc gatctggctt cagcaatcgc
      481 ttcgatcact tcggggcgcg ccacgctttt aagctgctgc aattcctgtt tcagcaattc
      541 cgcaccgcgt acggtcaggg ggattttttg catcggtctt ttttctccat attccggcac
      601 accggtttgc ggcagcaaac ataccgcata ccgtcttgtt ttgtgcgtcc ggatattaaa
      661 ataaaaacac aagccgcccg gaaaatcggc ggcttgtctg tcgttgaaca gcagctattc
      721 taccaaattc tatgaaattg gcaatcgtgc cgtgccgtcc gcaaacacgc tatgtccgca
      781 acaaaagccg aaaatatgcc ggcaaaaaaa ttttagaaac aaaaaattta aaaataatca
      841 attttcggca taaaaaacca catttacgga ctttaaaacc gaaaatgcca aacctgagat
      901 ttttcataca gcatttgcac cagtataatg caggctgttt ttatctttat aatattgacg
      961 ttttgccatg accgaatccg tccgcctccc cgtcgcccgt ctcaaacctt ccaccgtcgc
     1021 cctgcccggc tccaaaagca tcagcaaccg caccctgctg cttgccgcct tgtccgacaa
     1081 tgcttgcgaa atccattccc tgctcaaatc cgacgatacc gaccgtatgc tcgaagcact
     1141 cgataaactc ggcgttcaaa tcgaatatct tgccgaagac cgtctgaaag tgcacggcac
     1201 aggcggacgc ttccccaacc gcactgccga tttgtttttg ggcaacgcgg gcacggcgtt
     1261 ccgtccgctg actgccgcac ttgccgtttt gggcggcgat tatcatctgc acggcgtgcc
     1321 tcgtatgcac gaacgcccca tcggcgattt ggccgatgcg ctgcggattg ccggcgccga
     1381 tgtcgaatat ctcggcaagg aacactatcc gccgcttcat atcggcaaac gtcaagacaa
     1441 cggcgaacgc gtgattccga ttaaaggcaa tgtgtccagc cagtttctga ccgccctttt
     1501 aatggcgttg ccgctgaccg ggcaggcgtt tgaaatccgt atggtcggcg aattgatttc
     1561 caagccctat atcgacatta ctttaaaact gatggcgcaa ttcggcgtac aggttgccaa
     1621 tgaaaactac cgcgtcttca aaattcccgc cgatgcgcac taccacgcgc ccgaacactt
     1681 gcacgtcgaa ggcgatgcct ccagcgcgtc ctacttcctc gcagccggtt tgattgctgc
     1741 cacgcccgtg cgcgtgaccg gcatcggcgc aaacagcata cagggcgatg tcgcctttgc
     1801 ccgcgagctg gaaaaaatcg gggcggacgt ggtttggggc gaaaacttcg tcgaagtttc
     1861 acgcccgaag gaacgtgccg tccaatcctt tgatttggat gcgaaccata tccccgatgc
     1921 cgccatgacc ctcgccatcg tcgcgcttgc tacagggcaa acctgcacgc tgcgcaacat
     1981 cggttcgtgg cgcgtcaaag aaaccgaccg catcgccgcg atggcaaacg agttgcgcaa
     2041 actcggggca aaagtcgtcg aagaagccga agcaattcac atcaccccgc ccaaaacgct
     2101 gacacccgac gccgtcatcg acacgtacga cgaccaccgc atggcgatgt gtttctcgct
     2161 ggtttcgctg ttgggcgtac ccgtcgtcat caacgatccg aaatgcaccc ataaaacctt
     2221 cccgacttat ttcgacgtgt tctcttcact gaccgaaaca acggaataag gcggcatttt
     2281 gccgcgattc cggcgcggcg cggcgggcgg ctcattctgt aaagaaagta tgtgcgccga
     2341 ggtagttttt ggcgtaaaac ggtgtggaga gtttttcggt tttgatggtt ttgccgctgc
     2401 tgggggcatg gatgaattcg ccgttgccga tatagagtcc gacgtgtgag tagcggtgtg
     2461 tgccgccggt gttgaagaat acgaggtcgc cggccttaag gcggctgtcg gggattttgc
     2521 ggcttgccgc cgccatgtcg cgggcggtgc gcggcagctt gacgttgagg gcgtttttgt
     2581 aaacgaattg aatcatgccg ctgcaatcga agccggttgc ggtgctgctg ccgccccatt
     2641 tgtagggcgt gccgatgagt ccgaggctgt ggagcatgag ttcctgcgag ccttgtgtgc
     2701 ggtcgatgtg gctgatgcgg acggcttgga tttgccggac tgtctgtttg ggtttcggtt
     2761 ggcggtgttt gccggaggtc gtgccgcatg aggcgaggag cagtgcgctg agacagagga
     2821 aaagggtttt gtcgggggga aacatggttt ttcctttgcg ggttcggata tccgtctgaa
     2881 ggt
//
LOCUS       DAXHNP010000198         2879 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.198, whole genome shotgun sequence.
ACCESSION   DAXHNP010000198 DAXHNP010000000
VERSION     DAXHNP010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.198"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            265..487
                     /locus_tag="ACFM5C_001975"
                     /pseudo
     CDS             265..487
                     /locus_tag="ACFM5C_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(548..1501)
                     /locus_tag="ACFM5C_001976"
     CDS             complement(548..1501)
                     /locus_tag="ACFM5C_001976"
                     /inference="COORDINATES: protein motif:HMM:NF042780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6716 putative glycosyltransferase"
                     /protein_id="HFC6069613.1"
                     /translation="MHQYYDAVILSVGNGLLKRFFKQNAQLNIASRPLIITLFPGVVF
                     GDQASILSRMGADIVLYNNKHDFRIAEEYKKQYKLSCQNILYGYPIFRHASKGRHGEK
                     IYFIDQVKIPFKKEERIYTLKKLIALAEKYPEKEFTILLRVADKDITVHQDKHSYIEL
                     AKQFQLPSNLTIERKSTAQAFQEMGYCLSYSSTMLFEAECKGIPVGVVADLGFSKSYA
                     NQHFLGSGVLVYFDQIDFTSPKIADPDWLDCYATKKVITTDEFNKLLKQVVPLQHDYQ
                     EYLSAVNSIESTKTIFLRKFKKLIRDPKKFFYDSKWLRKVI"
     gene            1884..>2879
                     /gene="galE"
                     /locus_tag="ACFM5C_001977"
     CDS             1884..>2879
                     /gene="galE"
                     /locus_tag="ACFM5C_001977"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFC6069614.1"
                     /translation="MKKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPR
                     LKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNV
                     SGSLVLAEEMARAGVFKIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERI
                     LTDIQKADPRWSVILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLSV
                     FGDDYPTPDGTGMRDYIHVMDLAEGHVAAMKAKGGVAGIHLFNLGSGRAYSVLEIIRA
                     FEAASGLTIPFEIKPRRAGDLACFYADPSYTKAQIGWQTQRDLSQMMEDSWRWVSN"
BASE COUNT          852 a          564 c          571 g          892 t
ORIGIN      
        1 gtgcgcaaag ccatctgaag gcgatgtgtt tgaacctgtt gaaagccgcc aacaggctaa
       61 gtgcgcccgc tgccgcctaa aaggtgcccc ggatgcctga ttatcgggta tccggggagg
      121 attaaggggg tatttgggta aaattaggag gtatttgggg cgaaaacagc tgaaaacctg
      181 tgtttgggtt tcggctgtcg ggagggaaag gaattttgca aaggtctcag gctgcatttc
      241 tcaatgtaaa acgcgatatt ttcacccatt attagggata agtagccagt ggtttacact
      301 ggctactttc atagttatga agtactgggt ctgagtgaat tcaattattt ccgtataaaa
      361 cacagtagac attttactaa tcggcaaaat tatattagaa gaattgagaa ctactgaagt
      421 caggtaagat accattttgc acaaatttaa cggcatccct aaaaagcatt ttgggtggta
      481 tttaaaggag tacaaaatgg ttttaactac agtatgctta gaaatctata gccttacgcg
      541 ctttatatta aatcaccttt ctcaaccatt tagaatcata aaaaaacttt ttaggatccc
      601 taattaactt tttaaatttt cttaaaaaaa tagttttagt tgattctata ctattcaccg
      661 cagataaata ttcttggtaa tcatgttgca atggcacaac ctgctttaat agcttattaa
      721 actcatcagt tgtaatcacc tttttagtag catagcaatc aagccaatcc ggatctgcta
      781 tttttgggga agtgaaatct atttgatcaa aataaactaa aaccccacta cctaaaaaat
      841 gctgatttgc ataggattta gaaaagccta agtctgcaac aacaccaaca gggataccct
      901 tacattcagc ttcaaaaagc atagtagatg aataagataa acaatacccc atttcttgga
      961 aggcttgcgc ggtacttttt cgctctattg tcaaattact cggcaactga aactgctttg
     1021 ccagctctat atacgaatgt ttatcctgat gcacagtaat atctttatct gcaaccctta
     1081 gcaaaatagt aaattctttc tcagggtatt tttcagccaa ggcaatcaat ttttttaatg
     1141 tataaattct ttcttctttt ttaaatggga ttttaacttg gtcaataaag taaattttct
     1201 ctccatgacg accttttgat gcgtggcgaa aaattggata accataaagt atattttgac
     1261 aacttaattt atattgtttc ttatattcct ctgcaattct aaaatcatgc ttattattat
     1321 ataaaacaat atcagccccc atacgagata gaatacttgc ctgatcaccg aatactacac
     1381 ctggaaacaa ggtaataatc aatggccttg aagcaatatt taattgcgca ttctgcttaa
     1441 agaacctttt taacaaccca tttccaaccg ataaaattac tgcgtcataa tattgatgca
     1501 tattcttaat aaagtaatca tcaatatgaa aaaaaaaatt gcttggtctt tatctatccc
     1561 tgattctaat aactgtcgat ttgaaagaat gttttctcga cttttgtgga tataaatatc
     1621 aatttgagca tcttttatct cttttgcaac agcatagccc gagttaagga acgagtcata
     1681 actggcaatt agtaatactt ttttcactat tttcccttaa ttctacacca tatgaataaa
     1741 attatagtat tttaccttag atatcaaata tacttaacca aaaaaatctg aagaaatcta
     1801 ctgctacttc agggataatt atttcattaa gattttacaa ccattattat caatctatca
     1861 aagtattttt agtattttat tctatgaaaa aaattctcgt taccggcggc accggtttta
     1921 tcggctcgca taccgttgtt tctttgctga aaagcggcca tcaagtcgtg attttggata
     1981 acctatgcaa ttccagcatc aatatcctgc cacgcttgaa aacgattacc ggccaagaga
     2041 ttccgtttta tcaaggcgat atccgcgatc gtgagatttt gcgccgtatt tttgcggaaa
     2101 accgcattga ttcggtgatt cattttgccg gcttgaaagc ggtgggtgaa agtgtggccg
     2161 agccgatgaa atattatgat aataatgttt ccggcagctt ggtgttggcg gaagaaatgg
     2221 cgcgtgccgg cgtatttaag attgtgttca gctcatcggc tacggtttat ggcgatccgg
     2281 gcaaagtgcc ttataccgag gatatgccac tgggcgatac caccagccct tacggcacat
     2341 cgaaatcaat ggttgagcgc attctcactg atattcaaaa agccgatccg cgctggagcg
     2401 tgattttgtt gcgttatttc aatccgattg gcgcgcacga aagtggtttg attggcgagc
     2461 agccaaacgg catcccgaat aatttgttgc cttatatctg ccaagtggcg gcaggcaaac
     2521 tgccgcagtt gtcggttttc ggcgatgact accctacccc agacggtacg ggtatgcgcg
     2581 actatatcca tgtaatggat ttggcggaag gccatgtcgc ggcaatgaag gcaaaaggcg
     2641 gcgttgccgg catacatttg ttcaacttgg gttcggggcg cgcctattcc gttttggaaa
     2701 tcatccgcgc atttgaagcg gcttcgggtt taaccattcc atttgaaatc aaaccacgcc
     2761 gtgcgggcga tttggcgtgt ttctatgctg acccttctta tacgaaggca caaatcggtt
     2821 ggcaaactca gcgtgattta agccaaatga tggaagattc atggcgctgg gtaagtaat
//
LOCUS       DAXHNP010000199         2753 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.199, whole genome shotgun sequence.
ACCESSION   DAXHNP010000199 DAXHNP010000000
VERSION     DAXHNP010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.199"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..1350
                     /locus_tag="ACFM5C_001978"
     CDS             <1..1350
                     /locus_tag="ACFM5C_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HFC6069615.1"
                     /translation="AAIGYATGGSGGAVVGANVDWHNRQLHPSERDWIRKNAQAFAKQ
                     EVGGREPTIDEIALAEKRLAQQAAKETDLFWMLTLEKVTDLSAQKFLRQAKGTFTNEN
                     GTQQQFFTTQGKQFMRPELFANEVYDLSFYKNHLQSPKNSSISKGTGELARRVTSSTW
                     DKAKQDPILTGLQIAASPVHLVRDVGKASWQCVSGFGQCLQQGKENFVETGSAIGTGT
                     ASFQLNDLKPIYGQDVRGAQAGLVALQTADGITTALGAAKALNVAGKGSRYFINEWAS
                     SPPSGSRAAQRGAVGNLTHSQQVLTDGSHIQRGGKLLPNIRYKAGEFDYLYETDTLGR
                     IKSFETDNLQLTQRDRLKHNSKTPDKVKGQDHAGHLIGDRFGGSPNLDNLVSQHKDVN
                     LSAYKVLENKWAEAIKSGKNVKIQMQIEYAAGTRHPTRFVGYYWIDGKPTRININNL"
     gene            1365..1811
                     /locus_tag="ACFM5C_001979"
     CDS             1365..1811
                     /locus_tag="ACFM5C_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069616.1"
                     /translation="MIFEDYFSELQADMVSICLEYVQGKADKIYIYAAFEPRVSGAGC
                     FFSVKGKLVQRHLVNQEIPEVNLDHQIQVLDILMEDLEKLNSICQKFNQPMPTEIKMI
                     YDVKKNSLSANYQYNLILSSESGLLALPQDVEDAWFEEIKKQMEDN"
     gene            1967..2317
                     /locus_tag="ACFM5C_001980"
     CDS             1967..2317
                     /locus_tag="ACFM5C_001980"
                     /inference="COORDINATES: protein motif:HMM:NF045464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6883 domain-containing protein"
                     /protein_id="HFC6069617.1"
                     /translation="MPTLRLLIPNADSVIIDTRKFTDYALNPNHDVGRHKARVFESAL
                     GYNQSNATELILKIRQGLKDNPARLGKKDQYGQRYTVDIPITGPNGKTAIVTTGWILV
                     PGSEIPKMTTVLVK"
     gene            2327..2518
                     /locus_tag="ACFM5C_001981"
     CDS             2327..2518
                     /locus_tag="ACFM5C_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4926 domain-containing protein"
                     /protein_id="HFC6069618.1"
                     /translation="MNLNDVVKLKVKQPNSNVPEGSIGTIIEVLQELPSAVFEVEFIN
                     KNGELIDTLTLAECDIEPA"
BASE COUNT          959 a          435 c          596 g          763 t
ORIGIN      
        1 gcggcaatcg gctatgcaac tggtggtagt ggtggtgctg tggtgggtgc gaatgtagat
       61 tggcataatc ggcagttgca tccgagtgaa agagattgga taagaaaaaa tgcacaagct
      121 tttgcgaaac aggaggtagg tggtagagaa cccactatag atgaaattgc attagcagaa
      181 aaacgactag cacaacaggc ggctaaagag acagatttgt tttggatgct aacattagaa
      241 aaagtaacag atttatcagc tcaaaaattc ctaagacaag caaaaggaac ttttacaaat
      301 gaaaatggta cgcagcaaca attttttact acgcaaggga agcaatttat gcgtcctgaa
      361 ttgtttgcta atgaagtata tgatctgtct ttttacaaaa accatttaca atctcctaaa
      421 aatagtagta tcagcaaggg tacaggagaa ttggctcgaa gagttacttc atctacttgg
      481 gataaagcaa aacaagatcc tattttgaca ggattgcaaa tagctgcctc ccctgtacat
      541 ttagttcggg atgtaggtaa ggcaagctgg cagtgcgtaa gcggctttgg acaatgtttg
      601 caacaaggaa aagagaattt tgtagaaaca ggttctgcaa ttggaacagg aactgcctct
      661 tttcaactaa acgaccttaa gccgatttat ggtcaagatg tacgtggtgc acaagcagga
      721 ttggttgcac tacaaacggc agatggaata actacggcat tgggtgcagc aaaagcatta
      781 aatgttgcag gaaaaggtag tcgctatttt ataaatgaat gggctagtag tccgcctagt
      841 ggttctcgtg ctgcacagcg tggggcagtg gggaatttaa cccattcgca acaagttttg
      901 acagatggtt cacatattca acgtggcgga aaacttttac ctaatattcg ctataaagca
      961 ggcgagtttg attatttata tgaaactgat actttaggta gaattaaaag ttttgaaaca
     1021 gataatttgc aattaacaca gagagataga ttaaagcata attcaaaaac tcctgataaa
     1081 gtcaaggggc aagaccatgc aggacattta attggagata gatttggagg ttcgcccaat
     1141 ttagataatt tagtgtcaca gcacaaagat gtaaacttaa gtgcgtataa agttttggag
     1201 aataaatggg cggaagcaat taaatcagga aaaaatgtta aaatccaaat gcaaattgaa
     1261 tatgcagcag gtacaagaca ccctacacga tttgttggat attattggat tgatggtaaa
     1321 ccaactagaa ttaatattaa taatttatga aacaaggatt ttttatgatt tttgaagatt
     1381 attttagtga attacaagca gatatggttt ctatttgttt ggaatatgtt caaggtaagg
     1441 ctgataaaat ttacatttat gcagcttttg agcctcgtgt tagtggtgct ggatgttttt
     1501 tctctgttaa aggaaaactt gtacaacgac atcttgttaa tcaagaaatt ccagaagtta
     1561 atcttgacca tcaaattcaa gtattagaca tacttatgga agatttagaa aaactaaatt
     1621 ctatttgtca gaaatttaac caacctatgc caactgaaat taaaatgatt tatgatgtaa
     1681 aaaagaatag cttatcagca aattatcaat ataatttaat cttgtcatct gaatctggat
     1741 tacttgcttt accgcaagat gttgaagatg catggtttga agaaattaag aagcaaatgg
     1801 aagataatta attcacagca agcgtagcaa gcgtagggtg ggcaactcgt tgcccacgca
     1861 gttcaatcgt atatgttaaa atgatgtttt aatgtgaaat atttcatttc aggctgcctg
     1921 aaaaaataaa ataacgtggc gtgtatcaaa ccgcgtgggc aacgagttgc ccaccctacg
     1981 cttgctaatc cctaacgctg attctgtcat aatcgatacc agaaaattta cagattatgc
     2041 attgaatcct aatcatgatg ttgggagaca taaagctaga gtttttgaat cagctctagg
     2101 atataatcaa tctaatgcaa ctgagctaat tttgaaaatt agacaaggat taaaagataa
     2161 ccctgcaaga ttaggaaaaa aagatcaata tgggcaaaga tatacagtag atattcctat
     2221 tactggacct aatgggaaaa cagccattgt aactacaggc tggattttag tgcctggatc
     2281 tgaaattccc aaaatgacaa ccgttttagt aaaataggtg ccaataatga atttaaatga
     2341 tgttgtaaag cttaaagtaa aacagcccaa tagtaatgta cctgaaggta gtataggtac
     2401 aataatcgaa gttcttcagg aattgccatc tgctgttttt gaagtggaat ttataaataa
     2461 aaatggcgaa ctaatcgata cattaacgct agcagaatgt gacatagagc cagcgtaacc
     2521 tgtgcaatta atgcgaactg ttacatggta gggtgggcaa ctcgttgccc acgcagttca
     2581 gtctcatgtg ctaaaactat gttttaaggc gaaagttttg gattgggcgc aagtgcgtcc
     2641 ataagcggca aaacactggg acagggcgca aaaaataaac ctcaaaacaa acacctgaca
     2701 agcgtagccg ataaaaacgg cgcaagttca tcagtgggtt atggcagcga cca
//
LOCUS       DAXHNP010000200         2612 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.200, whole genome shotgun sequence.
ACCESSION   DAXHNP010000200 DAXHNP010000000
VERSION     DAXHNP010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.200"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(311..544)
                     /locus_tag="ACFM5C_001982"
     CDS             complement(311..544)
                     /locus_tag="ACFM5C_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HFC6069619.1"
                     /translation="MKLTLMFREYCSLCHKMRDELKPFQDEYGFGLEVVDVDENPVLE
                     EKYNELVPVLLAGDEEICHWFLDEDRLKQFLER"
     gene            complement(710..910)
                     /locus_tag="ACFM5C_001983"
     CDS             complement(710..910)
                     /locus_tag="ACFM5C_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HFC6069620.1"
                     /translation="MFVCICNAVTDHQIKETIAAGATTMGDLQSQLGVASCCGCCGEL
                     AASFLTAHNAQPTVTAGINVQA"
     gene            complement(1082..1957)
                     /gene="xerD"
                     /locus_tag="ACFM5C_001984"
     CDS             complement(1082..1957)
                     /gene="xerD"
                     /locus_tag="ACFM5C_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HFC6069621.1"
                     /translation="MEEGLIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRM
                     LKDADEADLAAAVYVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDK
                     NIPTLITEQQISRLLATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRG
                     CITALGKGDKQRMVPMGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLA
                     WMIVKEYASQAGIGHISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVA
                     NVWLQGVVKEHHSRN"
     gene            complement(2009..2449)
                     /locus_tag="ACFM5C_001985"
     CDS             complement(2009..2449)
                     /locus_tag="ACFM5C_001985"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFC6069622.1"
                     /translation="MDVKYEFTLPSSSGADFHSAEHLPLVVYFYPKDSTPGCTTEGLD
                     FNARLEQFEALGYTVVGISRDGVKAHQNFCAKQGFRFELLSDKDETVCRLFDVIKLKK
                     LYGKESLGIERSTFVLNKDGEIAHEWRKVKVAGHAQEVLETLSR"
BASE COUNT          697 a          745 c          522 g          648 t
ORIGIN      
        1 taccgattac acaaacacat atcatcttta cacaatcatg cttccatcaa cagtaaaaca
       61 tgatatgatt gccaacaata acatctcaca ataaattttc taatttttat tgaaaaaatc
      121 aataaataag aattctccca accgacaaat aaaataaaga aagggtcaat atgcaacacc
      181 gtagaagatt gacaatttac caggcatcca aacgtgcttc ctttactggc aggtcatccg
      241 ccccgcaaaa acgtaaagaa cgttgatttg aaaaaaatgc cgtctgaagt cctgcttcag
      301 acggcatttt ttaccgttcg agaaactgtt tcaacctgtc ctcatccaaa aaccagtggc
      361 agatttcctc atctcccgcc aacaaaacgg gaaccagttc attgtatttt tcttccaaaa
      421 caggattttc atccacatcg accacttcca gcccgaaccc gtattcatcc tgaaaaggtt
      481 tgagttcgtc gcgcattttg tggcacaagc tgcaatattc acgaaacatc aaggtcaatt
      541 tcatccgcgt ttccttatct gtcaatttgc acacgccaaa gccttagacg cagcagaatc
      601 atggtctatt tgggaaaaaa caatgttttc aaggaagatg atactcaagt cctgccaaaa
      661 acagcaaaaa tgccgtctga acagttcaga cggcatttcc aaaaccgttt tacgcttgaa
      721 cgttgatacc cgccgtaacc gtcggttgcg cattgtgcgc cgtcagaaac gaagcggcaa
      781 gctccccgca gcagccgcag cagctcgcta cgcccaattg cgactgcaaa tcgcccattg
      841 tggtcgcgcc ggcggcgatg gtttccttga tttgatggtc ggtaacggca ttgcagatgc
      901 agacaaacat tttgtgctcc gtgtgttctc aaactatcgt accgatagcg gcttttatta
      961 tcgtatgcaa atataaataa aaacggttcg cattgcaagg tcggcataca cggtttgtct
     1021 tggtaatttt ttatcaagtt ttcatttccg attgatttct tattaaaccg aagcagaagc
     1081 ctcagtttcg ggaatggtgt tccttcacta caccctgcaa ccatacattg gcaacatggg
     1141 tgtaaatctg cgtcgtattc aaatcggcat gtcccaacat atcctgaacc acgcgcaaat
     1201 ccaatccgtg ctgcaccaag tgcgtggcaa aggcgtggcg caggctgtgc gggctgatgt
     1261 gcccgatgcc tgcctgactt gcatattctt tgacaatcat ccatgccaac tgacgagaaa
     1321 tgcccgtctt tttctgactg acaaacaatg cgtcgcaatt cctgcctttc agcagaagtg
     1381 ggcgtgcctc cgtataatag cgttccaccc aatacgccga ctcctgcccc atcgggacca
     1441 tcctctgctt atcgcccttg cccagcgcgg taatacagcc cctgtccaaa tccacattgc
     1501 cgaagttcag cccgaccgcc tcgctgacgc gcaagccggt cgcgtacatc aattcgagca
     1561 gtgccttgtc ccgcaaaccg tgtggcgtat cagtatccgg agtggcaagc agccgggaaa
     1621 tctgctgttc tgtaatcagt gtcggaatat tcttgtcgat tttgggcggt ttcagcaaac
     1681 gggtgggatt gtccgtcctt atgccttcac gctccatcca tatatacagg cgtttgcacg
     1741 ccgataatgc gcgcgcctgc gaactccgtt gctctccgtc aacataaacc gccgccgcca
     1801 aatccgcttc gtccgcatcc ttcagcattc tgcccgattg ggacaggcgg cgggcgattt
     1861 tttccaaatc gcgccggtaa ccgtttaaag tattctgact gagccgcctg tccaaccaca
     1921 gcgtttcaag cagcctgtcg atcaaacctt cttccatacc gttccaaaca aatgccgtct
     1981 gaatcttctt cagacggcat ggttcacatt atcgggaaag cgtttccaac acttcctgtg
     2041 catgacccgc cactttgact ttccgccatt catgggcgat ttctccatcc ttattcaaga
     2101 cgaacgtact gcgctcgata cctaacgact ctttcccgta cagtttcttc aatttgatga
     2161 catcaaacag gcggcacact gtttcatcct tgtcgctcaa cagctcgaac cggaaaccct
     2221 gcttggcgca aaaattctga tgcgccttta cgccgtcgcg ggaaataccg accacggtat
     2281 aacccaatgc ctcaaactgt tccaaacgcg cattgaaatc caagccttcc gtcgtacagc
     2341 ccggcgtact gtctttcgga taaaaataca cgaccaaagg cagatgttct gccgaatgaa
     2401 aatccgcacc gctgctcgaa ggcagggtaa attcatattt cacatccata gtcctactcc
     2461 cgatattccc attattcaaa acggcacgca gacgcaccgc cgcaattgcc aaaccaaccc
     2521 cgattctacc gccccaaagg acaaggattc aaccgccgga aacatccaaa ccgacacacg
     2581 acggcatgaa aaatatccat gtcaaaccac aa
//
LOCUS       DAXHNP010000201         2579 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.201, whole genome shotgun sequence.
ACCESSION   DAXHNP010000201 DAXHNP010000000
VERSION     DAXHNP010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.201"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(195..266)
                     /locus_tag="ACFM5C_001986"
     tRNA            complement(195..266)
                     /locus_tag="ACFM5C_001986"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(231..233),aa:Arg,seq:cct)
     gene            complement(286..732)
                     /locus_tag="ACFM5C_001987"
     CDS             complement(286..732)
                     /locus_tag="ACFM5C_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HFC6069623.1"
                     /translation="MNFSFVPLFLVTLILLGVVSNNNSITISATILLLMQQTALVQFV
                     PLVEKHGLNLGIILLTIGVLSPLVSGKAQVPPVAEFLNFKMISAVFIGIFVAWLAGRG
                     VPLMGQQPVLITGLLIGTVIGVAFMGGIPVGPLIAAGILSFVVGKG"
     gene            complement(737..1711)
                     /gene="ispB"
                     /locus_tag="ACFM5C_001988"
     CDS             complement(737..1711)
                     /gene="ispB"
                     /locus_tag="ACFM5C_001988"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HFC6069624.1"
                     /translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
                     GGKRLRPIMTILAGKAVGYDDEKLYALAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
                     NLFGNAAAVLVGDFLYTRAFQLMVASGSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
                     TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHEQALKDYGMYVGTAFQIIDDVLDY
                     SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
                     VRSDALAYSIGEARKAVDCAVAALDALPDSEVKDAMIQLAKESLVRVS"
     gene            1935..2243
                     /gene="rplU"
                     /locus_tag="ACFM5C_001989"
     CDS             1935..2243
                     /gene="rplU"
                     /locus_tag="ACFM5C_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFC6069625.1"
                     /translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
                     ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
                     "
     gene            2268..2540
                     /gene="rpmA"
                     /locus_tag="ACFM5C_001990"
     CDS             2268..2540
                     /gene="rpmA"
                     /locus_tag="ACFM5C_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFC6069626.1"
                     /translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
                     FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
BASE COUNT          754 a          695 c          575 g          555 t
ORIGIN      
        1 taaaacaaca gatttccaag ccggaacatc ttttacggag cctgaaaatc atttcatgat
       61 tctaccgtcc taaaggtcgg tttttcaagc aggaagaaaa agttttcaga tggcaaaaaa
      121 gccctccaac actgaaaggc cttatatcgg aaacttcccg caacacggga aacagacaaa
      181 tgcaaatcgt caaacctcgc caacaggaat cgaacctgta ttttacgctt aggaggcata
      241 cgttctatcc gttgaactat ggcgagccga aatgaaaagg agattttaac cctttccgac
      301 gacaaaagac aagatgccgg ccgcaatcag cggcccgaca gggataccgc ccataaatgc
      361 caccccgata accgtcccga ttaacagccc tgtaattaaa acaggctgct gtcccatcaa
      421 aggcacgccg cgtcccgcca gccaagccac gaaaataccg ataaaaacgg cggatatcat
      481 tttaaaattc aaaaattcgg caacgggagg aacctgcgcc tttcctgaaa ccaacggact
      541 caaaacccct atggtcaaaa gaatgatacc gagattcaac ccgtgcttct cgaccaacgg
      601 gacaaactgt accaatgccg tctgctgcat cagcagcaat atggttgccg agatggtaat
      661 cgaattgttg ttgctgacca cccccaacag aatcagcgta accagaaaca ggggaacaaa
      721 actgaaattc atcgcctcaa gacaccctga ccaaagattc cttcgccagc tgaatcatgg
      781 catccttcac ttcgctgtcg ggcagggcat ccaacgcggc aacggcacaa tcgactgctt
      841 tgcgcgcctc gcctatcgaa tatgccaaag catccgaacg gacgacataa tcgtggattt
      901 tctcaaaata gctgcgatct gcattttcca aagcagtacg cacatcgttc gcaacctgtt
      961 cggaaccctg acgcatcaga taaatcaaag gcaaagtcgg ttttccttcc gccaaatcgt
     1021 cgccgacgtt tttgccggtt tcttcggttt cgccagaata gtccagcaca tcgtcaataa
     1081 tttggaatgc cgtaccgaca tacataccgt agtctttcaa cgcctgttcg tgttcggggg
     1141 aagccttgcc caaaattgcg ccgacttgag cggcagcttc aaacaatttt gccgttttat
     1201 attggatgac ttggatatat tgttcttcgg taatgtccgt attgccgatg ttcatcagct
     1261 gcatgacttc gccctcggca ataatgttgg ttgcatccgc catcacttcc aaaacgcgca
     1321 tactgcccga ggcaaccatc agttgaaagg cgcgcgtgta taaaaagtcg ccaaccaaca
     1381 cagccgccgc attgccgaac agattgtttg ccgttgcccg cccacggcgc aaatcgcttt
     1441 catcgacgac atcgtcgtgc aggagggtgg aagtgtggat aaattcgacc atcgccgcca
     1501 gcgcatacag tttctcgtca tcataaccga ccgccttacc cgccaaaatc gtcataatcg
     1561 gacgcaggcg tttgccgccc gcgctgatga tatatgtacc gatttgcgaa atcagtgcga
     1621 catcggattg caccgcacgg ttgatgactt cattgacttt ggcaaggtct tcaggcagat
     1681 gtcgctggaa atagggcaga ttctcgagca tggcagactc tcaggtttac gtttccgtca
     1741 aacggcagat accgcttgaa agctgattca aatagcgggc aattatatca gcaaagccat
     1801 cagggtacat cttttcagac ggcatatggt tatccgaacc gcgcaaactt tgacaaaaca
     1861 ggcaaataac aatacaatgc cgagttccgc acaatggtgt gcggatatta accataaccc
     1921 ttatggagtt gagtatgtac gcggtcgtaa aaaccggcgg caaacagtat aaagtttccg
     1981 tcggcgaaaa attgaaagta gaacagatac cagccgaact cgacagccaa atcgaactga
     2041 ccgaagtttt gatgattgct gacggcgaat ctgtaaaagt tggcgcaccc tttatcgaag
     2101 gtgcaaaagt aacggctaaa gtagtggcac acggtcgtgg cgaaaaagtc cgcatcttca
     2161 aaatgcgccg ccgcaaacac taccaaaaac gccaaggcca ccgccaaaat ttcacccaaa
     2221 tcgaaatcgt ggcaatcgcc taaccttaaa acttaggagc attacaaatg gcaagtaaaa
     2281 aagcaggcgg cagcacccgc aacggtcgcg attcagaagc caaacgcttg ggcgttaaag
     2341 cctacggcaa cgagctgatt cccgcaggtt ccatcatcgt acgccaacgc ggtaccaaat
     2401 tccacgcagg cgacaacgta ggtatgggca aagaccacac tttgttcgcc aaagttgacg
     2461 gttatgtcga attcaaaacc aaaggcgcgc tgaaccgtaa aactgtcagc atccgtcctt
     2521 acaccggttc tgaagaataa tccaaccgat acctgaagcc gcatcttttc acgatgcgg
//
LOCUS       DAXHNP010000202         2565 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.202, whole genome shotgun sequence.
ACCESSION   DAXHNP010000202 DAXHNP010000000
VERSION     DAXHNP010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.202"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..2429
                     /locus_tag="ACFM5C_001991"
     CDS             <1..2429
                     /locus_tag="ACFM5C_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6069627.1"
                     /translation="GDGIETVAAKGFSGSLFDHNGNGIRTATGWVSADDGLLVRDLNG
                     NGIIDNGAELFGDNTKLADGSFAKHGYAALAELDSNGDNIINAADAAFQSLRVWQDLN
                     QDGISQTNELRTLEELGIQSLDLAYKDVNKNLGNGNTLAQQGSYTKTNGTTAKMGDLL
                     LAADNLHSRFKDKVELTAEQAKAANLAGIGRLRDLREAAALSGDLANMLKAYSAAETK
                     EAQLALLDNLIHKWAETDSNWGKKSPMRLSTDWTQTANEGIALTPSQVAQLKKNALVS
                     LSDKAKATIDAARDRIAVLDAYTGQDSNTLYYMSEEDALNIVKVTNDTYDHLAKNIYQ
                     NLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQKAFVDLAEMLAYGE
                     LRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLAKTSGTQADDILQNVGFGH
                     NKNVSLYGNDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYATGRKDIIR
                     FTDGITADMLTFTREGNHLLIKAKDGSGQVTVQSYFQNDGSGAYRIDEIHFDNGKVLD
                     VATVKKLVQQSTDGSDRLYAYQSGSTLNGGLGDDYLYGADGNDLLNGDAGNDSIYSGN
                     GNDTLNGGEGNDALYGYNGNDALNGGEGNDHLNGEDGNDTLIGGAGNDYLEGGSGSDT
                     YVFGEGFGQDTVYNYHVDKNSDTMHFKGFKAADVHFIRSGSDLVLSASEQDNVRISGF
                     FYGENHRVDTFVFDDAAISNPDFAKYINAGNNLVQSMSVFGSNTAATGGNVDANTQSV
                     QQPLLVTPSA"
BASE COUNT          740 a          581 c          611 g          633 t
ORIGIN      
        1 acggcgacgg catagaaaca gtcgccgcca aaggcttttc aggcagcctc ttcgaccata
       61 acggcaacgg catccgcacc gccactggct gggtttctgc cgatgacggt ttactcgtcc
      121 gcgatttgaa cggcaacggc atcatcgaca acggcgcgga actcttcggc gacaacacca
      181 aactggcaga cggttctttt gccaaacacg gctacgcagc tttggccgaa ttggattcaa
      241 acggcgacaa catcatcaac gcggcagacg ccgcattcca atccctgcgt gtatggcagg
      301 atctcaacca ggacggcatt tcccaaacca acgaactccg cacccttgaa gaattgggta
      361 ttcaatcttt ggatctcgcc tataaagatg taaataaaaa tctcggtaac ggtaacactt
      421 tggctcagca aggcagctac accaaaacaa acggtacaac cgcaaaaatg ggggatttac
      481 ttttagcagc cgacaacctg cacagccgct tcaaagacaa agtggaactc actgccgaac
      541 aggcaaaagc cgccaatctt gcgggcattg gtcgtctgcg cgatttgcgc gaagctgccg
      601 cattgtccgg cgatttggcc aatatgctga aagcttattc tgccgccgaa actaaagaag
      661 cacagttggc attgttagat aatttgattc acaaatgggc ggaaaccgat tcgaactggg
      721 gcaaaaaatc gccaatgcga ctttcaaccg attggacgca aacggctaat gaaggtattg
      781 cactgacacc atcccaagta gcacaactaa aaaagaacgc tttagtttcc ctttctgata
      841 aagctaaagc aactattgac gccgcccgcg accgcattgc cgtgcttgat gcctacacgg
      901 ggcaggattc caacacactc tattacatga gcgaggaaga tgcgcttaat atcgtcaaag
      961 taaccaacga tacatacgac catctcgcca aaaacatcta ccaaaacctg ttattccaaa
     1021 cccgtttgca gccatatttg aatcaaatca gtttcaaaat ggaaaatgat acgttcactt
     1081 tggattttag tggtcttgtt caagcattta accatgtcaa agaaactaat ccgcaaaaag
     1141 cttttgtgga tttggccgag atgcttgcat atggcgaact tcgttcttgg tatgaaggcc
     1201 gaagactaat ggccgattat gtggaggagg caaaaaaagc aggtaaattt gaagattacc
     1261 agaaagtgtt gggtcaggag accgttgcat tattagctaa aacatcgggt acgcaagcag
     1321 atgatatcct gcaaaatgta ggctttggtc ataataaaaa tgtttcttta tatggtaatg
     1381 acggcaacga cactctgatc ggcggtgcag gcaatgatta cttggagggc ggcagcggtt
     1441 cggatactta tgtcttcggc aaaggcttcg gtcaggatac ggtctataat tacgactacg
     1501 ctaccggacg caaagacatc atccgcttta ccgacggtat tacagccgat atgctgactt
     1561 ttacccgaga gggcaaccat cttcttatca aggcaaaaga cggcagtgga caagtgactg
     1621 ttcagtccta tttccagaac gatggctcag gtgcttaccg tatcgatgag attcatttcg
     1681 ataacggcaa agtactggat gttgccactg tcaaaaaact ggtacagcaa tccaccgacg
     1741 gttcggacag attgtatgcc taccaatccg gaagtacctt aaatggcgga ttgggcgatg
     1801 actatctgta cggtgccgac gggaatgacc tgctgaatgg tgatgcaggc aacgacagta
     1861 tctacagtgg caatggcaat gatacgctca atggaggaga aggcaacgac gccctgtacg
     1921 gctataatgg taacgatgca ctgaatggtg gcgaaggcaa tgatcatttg aacggcgaag
     1981 acggtaacga cactctgatc ggcggtgccg gtaatgatta cttggagggc ggcagcggtt
     2041 cggatactta tgtcttcggc gaaggcttcg gtcaggatac ggtctataat taccatgtgg
     2101 ataaaaactc tgacactatg cactttaaag gatttaaagc agcagatgtt cattttatcc
     2161 gttccggaag tgatttggtg cttagcgctt ctgaacaaga caacgtacgt atttccggat
     2221 tcttctatgg tgaaaaccat cgtgtagata catttgtctt tgatgatgca gctatcagta
     2281 atccagattt tgccaagtat attaatgctg gcaataattt ggtacagtct atgtctgtgt
     2341 tcggttctaa tactgctgcg acaggaggaa atgtggatgc caatacacaa tccgtacagc
     2401 agccgttatt ggtaacgcca tctgcataag gagcctaatc acattcatgg cttaaactga
     2461 aaaacagcaa tcaagtttat tttgattgct gtttttctta atattgggat aagggtcgta
     2521 ttttaattaa ccttaatcgg tgcacttcta gcaatatagt ggatt
//
LOCUS       DAXHNP010000203         2535 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.203, whole genome shotgun sequence.
ACCESSION   DAXHNP010000203 DAXHNP010000000
VERSION     DAXHNP010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.203"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(173..718)
                     /locus_tag="ACFM5C_001992"
     CDS             complement(173..718)
                     /locus_tag="ACFM5C_001992"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6069628.1"
                     /translation="MGKTVTLTAGHSNTDPGAVNGSDREADLAQDMRNIVASILRNDY
                     GLTVRTDGEGKGNMPLRDAVKLIRGSDVAIEFHTNAAVSKAATGIEALSTVKNKRWCQ
                     VLSKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTT
                     KWGICRAIADAIAMELGAARV"
     gene            complement(875..1303)
                     /locus_tag="ACFM5C_001993"
     CDS             complement(875..1303)
                     /locus_tag="ACFM5C_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HFC6069629.1"
                     /translation="MAFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGK
                     VDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDID
                     KESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF"
     gene            complement(1284..1718)
                     /locus_tag="ACFM5C_001994"
     CDS             complement(1284..1718)
                     /locus_tag="ACFM5C_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gp16 family protein"
                     /protein_id="HFC6069630.1"
                     /translation="MRRALIAKIKIAQKELGLDDGTYRAVLERVTGKRSCADMDVSEL
                     ESVVADMRSHGFKPKAKGNPHGKPHLRRTSSAAMLDKVEALLTVGGKHWNYAHAMARR
                     MFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS"
     gene            complement(1875..>2535)
                     /locus_tag="ACFM5C_001995"
     CDS             complement(1875..>2535)
                     /locus_tag="ACFM5C_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069631.1"
                     /translation="AFFAQMMTQKEDWQTMPYQPPTEAEEVLEALVNRRNQSADMRTA
                     EKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDDHTHTHFDGKAQVAEQIKGIGSI
                     TTATLMAMLPELGRLSHKRIASLAGIAPHPRESEETKFKSRCFGGRSAVRKALYMATV
                     VATRFKPLIRDFYQRLPSEGKPYKVAVTAYMRKLLTISNARMRDYFAENDTAENGIRT
                     A"
BASE COUNT          591 a          723 c          552 g          669 t
ORIGIN      
        1 cgtttggctg ccgccacgcc tgagtttctt aaatttgggc gtggataggt gtgtatcgga
       61 cgaacatttg gcatctgtat aagtgcgcgg tttacctgct cattactagg attttctcca
      121 atcaattttg taagaaaata ggaagcagct tctttcaatt taccaataat attcatactc
      181 ttgccgcccc caattccatc gcaatcgcgt ccgcaatcgc gcggcagatg ccccatttag
      241 tagtcttaaa caaggctaaa tcagtgtcgt tgctgataaa aaacggctca aacacaatgc
      301 cgccggcttg tgcataagcc aggcgcgaat gctggcccgc attgtcgggt ttaaagccgt
      361 cttcgccgcg cagtttccag ccggttttct tggcaacagc tttgctcaac acctgacacc
      421 agcgtttgtt tttaacggta ctcaaggctt cgatgcctgt cgccgctttg ctgacggcag
      481 cgttggtgtg aaactcaatc gccacatccg agccgcgaat cagcttgacc gcatcgcgca
      541 agggcatatt gcctttgcct tcgccgtcgg tgcgtacggt caggccgtaa tcgttacgca
      601 ggattgaagc cacgatgttg cgcatatcct gcgccaagtc cgcctcacgg tcgcttccgt
      661 tgaccgcgcc cgggtcggtg ttactgtgtc cggcggttaa agttacagtt ttgcccattc
      721 atcatctcca aaaaatattg attgcataac atttgaaaac cccattaaac cgtctttaac
      781 ccatcgtccc gaacggtaga tgtttcatcc cctacaaacc aaaaaaaaag accgtctgaa
      841 tacagacggc caaagcctgg tcacacatca ctgcctaaaa taaagctgcc tgctgtgccg
      901 caggtcggct catttcattg ataatcgtat atcctgttcg tgaagagata ccgtatttag
      961 ggcatagctt cgtcatcgcc ataagcccgc tctccttatc aatatcgcgc aatttgacaa
     1021 actcctgata aaacctatgg tttctcaact gtattaacgc cttgccgcac cgtgggacat
     1081 acaattcctc gccaccatat acctgcaaca gctcatgtgt tttcacttcg ccgatggctt
     1141 cgaccaaaat tgccaaacgc tcggtgtcca ccttgccctt accaaattta aaccgcgccc
     1201 cgccaatcgc cttgaccagc tgttccgtcg ctgccagtcc gatgacatcc acaatgtcca
     1261 acacggtatc cggcaataaa tgttcaactt tttcgaacgc catcatcccc acccgctttt
     1321 tccgttttcc tgttttccgc aatctgcaac gcagcaacca gtttatgtag ctgcgtatcg
     1381 tctaaatatt cgaccttatc cttaccaaac atccgccgcg ccattgcgtg tgcatagttc
     1441 caatgtttgc cgccgacggt cagcagggct tcgactttgt ccaacattgc cgctgatgat
     1501 gtccgacgca gatgcggttt gccgtgtggg ttaccttttg ctttaggctt aaatccgtgc
     1561 gaccgcatat cagcgacaac agactcaagt tcggaaacat ccatatccgc acacgaccgc
     1621 ttgcccgtca cacgctccaa caccgcgcga taggtaccgt cgtccaagcc cagctccttt
     1681 tgagcaatct taattttcgc aatcaacgcc cggcgcatct caaacccata aaacacaata
     1741 tattgactaa ttaacgcata ttataccaat aaaatacaat atatagtatt aagccgatgt
     1801 tttttgcgaa acggacagac ataaaaaagc aactgtattt ttcaccccgt cgggcaaaaa
     1861 taccaaaact caaatcaagc cgtccggata ccgttttcgg cggtatcgtt ttcggcaaaa
     1921 taatcacgca tccgggcatt cgatatcgtc agcagtttgc gcatatatgc cgtaacggca
     1981 accttatacg gcttaccctc ggacggcagg cgttggtaga aatcccgaat aagcggttta
     2041 aaacgtgtcg ctaccacggt agccatatac agcgccttac gtaccgcaga ccttccgccg
     2101 aagcagcggc ttttgaattt ggtttcctcg ctctccctcg ggtgcggggc aatgccggcc
     2161 aaactcgcta tccgtttgtg cgacagccgc cccaactcag gcagcatcgc catcagcgta
     2221 gccgtcgtta tcgaaccgat gcctttgatt tgctccgcca cttgggcttt gccgtcaaaa
     2281 tgcgtgtggg tgtggtcgtc gatttgtttg tccaattcgt caatcagccg gtcaaaatgg
     2341 gcaatcagtt gtttgacgct tccgacttgc gtttcgtgaa cctgatgcag acggtttttc
     2401 tcggcagtcc gcatatccgc cgattggttg cggcggttaa ccaaggcttc caacacttct
     2461 tccgcttctg tgggcggttg gtagggcatg gtttgccaat cttctttctg cgtcatcatc
     2521 tgtgcgaaga aggcg
//
LOCUS       DAXHNP010000204         2498 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.204, whole genome shotgun sequence.
ACCESSION   DAXHNP010000204 DAXHNP010000000
VERSION     DAXHNP010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.204"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            170..793
                     /gene="lolA"
                     /locus_tag="ACFM5C_001996"
     CDS             170..793
                     /gene="lolA"
                     /locus_tag="ACFM5C_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HFC6069632.1"
                     /translation="MMKPHNLFQFLAVCSLTVSVASAQAGAVDALKQFNNDADGISGS
                     FTQTVQSKKKTQTAHGTFKILRPGLFKWEYTSPYKQTIVGDGQTVWLYDVDLAQVTKS
                     SQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKG
                     GNLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTPPKGVDVLSN"
     gene            1066..2205
                     /locus_tag="ACFM5C_001997"
     CDS             1066..2205
                     /locus_tag="ACFM5C_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6069633.1"
                     /translation="MKKTLVAAAILSLALTACGGGSDTAAQTPSAKPEAGQSGKLNIY
                     NWSDYVDPETVAAFEKETGIKTRSDYYDSNETLEAKVLTGKSGYDLTAPSIANVGRQI
                     KAGAYQKIDKAQIPHYGNIDKDLLKMMEAVDPGNEYAVPYFWGINTLAINTQQVKKAL
                     GTDKLPENEWDLVFKPEYTAKLKSCGISYFDSAIEQIPLALHYLGKDPNSENPEDIKA
                     AVDMMKAVRGDVKRFSSSGYIDDMAAGNLCAAIGYGGDLNIAKTRAEEAANGVEIKVL
                     TPKTGVGVWVDSFMIPRDAQNVANAHRYIDYTLRPEVAAKNGSFVTYAPASRPARELM
                     DEKYTSDASIFPNKELMEKSFIVSPKSAESAKLGVKLWQGLKAGK"
     gene            2337..>2498
                     /locus_tag="ACFM5C_001998"
     CDS             2337..>2498
                     /locus_tag="ACFM5C_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6069634.1"
                     /translation="MDLSIVVPIYNVESYLEACLNSIEPILSNENVELILVNDGSRDG
                     SEDICYKYID"
BASE COUNT          674 a          724 c          618 g          482 t
ORIGIN      
        1 gcggcacaca ttaaagggca gcgtggcgcg cctgcctttt ccgagcggtc aaaaaaatca
       61 gccctcggaa aacgctgttt gtaaaatgca aaccgcccgt aacgccgccc gtatgattgt
      121 tttgccgcgc cgatacttta cgccacaccc atcccaacaa ggaaaaataa tgatgaaacc
      181 gcacaacctg ttccaatttc tcgccgtttg ctccctgacc gtctccgtcg cttccgcaca
      241 ggcgggcgcg gtggacgcgc tcaagcaatt caacaacgat gccgacggta tcagcggcag
      301 cttcacccaa accgtccaaa gcaaaaagaa aacccaaacc gcgcacggca cgttcaaaat
      361 cctgcgcccg ggcctcttca aatgggaata cacttcgccc tacaaacaga ctattgtcgg
      421 cgacggtcaa accgtttggc tctacgatgt cgatttggca caagtgacca agtcgtccca
      481 agaccaggcc ataggcggca gccccgccgc catcctgtcg aacaaaaccg ccctcgaaag
      541 cagctacacg ctgaaagagg acggttcgtc caacggcatc gattatgtgc tggcaacgcc
      601 caaacgcaac aatgccggct accaatacat ccgcatcggc ttcaaaggcg gcaacctcgc
      661 cgccatgcag cttaaagaca gcttcggcaa ccaaacctcc atcagtttcg gcggtttgaa
      721 taccaatccc caactctcgc gcggcgcgtt caagtttacc ccgcccaaag gcgtggacgt
      781 gttgagcaac tgatgccgtc cgcctcgatg ccgtctgaat gccgccgagg cttcagacgg
      841 cattttcacg caggcggaac aatgtcccgc attaccgccc gatcgggcat cggaacggca
      901 aacccgtgaa aattaacggt tgcgccccgg ttgtttttgc cgtttaatgc aaaccttgct
      961 gcaccaaggg ccaagaaagc cgaccggccg cccccacagc ttccgatgca ggcggcccgt
     1021 ccgtccctgc aatgtttttt atttttgaac gaaaggtcga aaaccatgaa aaaaacactg
     1081 gtggcggcgg cgatcctgag cctcgccttg actgcgtgcg gcggcggaag cgataccgcc
     1141 gcccaaaccc cctccgccaa gcccgaagcc ggacaatcgg gcaaactcaa tatctacaac
     1201 tggtcggatt atgtcgatcc cgaaaccgtc gccgcctttg aaaaagaaac cggcatcaag
     1261 acgcgttccg attattacga cagcaacgaa acactggagg caaaagtcct gaccggcaaa
     1321 tccggctacg acctgaccgc gccgtccatc gccaacgtcg gccggcaaat caaagcgggt
     1381 gcgtatcaga aaatcgacaa ggcgcaaatc ccccattacg gcaacatcga taaagatttg
     1441 ctgaaaatga tggaagccgt cgatccgggc aacgaatatg ccgtgcctta tttctgggga
     1501 atcaatactt tggcaatcaa tacccagcag gtgaaaaagg cattgggtac ggacaagcta
     1561 cccgaaaacg agtgggattt ggtgttcaaa cccgaataca ccgccaaact caaatcctgc
     1621 ggcatcagct atttcgacag cgcaatcgaa cagattccct tggcgttgca ctatttgggc
     1681 aaagacccca acagtgaaaa tcctgaagac atcaaagccg ccgtcgatat gatgaaagcc
     1741 gtccggggcg acgtgaaacg cttcagctct tccggctata tcgacgatat ggcggcgggc
     1801 aacctgtgtg ccgccattgg ttacggcggc gatttgaaca ttgccaaaac ccgtgccgaa
     1861 gaagccgcaa acggcgtgga aatcaaagta ttgaccccga aaaccggcgt gggcgtgtgg
     1921 gtggattcct ttatgattcc gcgcgacgcg caaaacgtcg ccaacgccca ccgctatatc
     1981 gactacacgc tccggcccga ggtggcggcg aaaaacggca gcttcgttac ctacgcgccc
     2041 gccagccgtc ccgcgcgcga gctgatggat gaaaaataca cctccgacgc atcgattttc
     2101 ccgaacaaag aactgatgga aaaaagtttc atcgtatcgc ccaaatccgc agaatccgcc
     2161 aaactgggcg tgaagctgtg gcaagggctc aaggccggaa aataaccgca acctctgccg
     2221 tctgaaacct ttcgggcggc aggaaacggc gcgtccgtta tcaaacaggg ggcgtttccc
     2281 cgcccgcctg ttatgattgg gttaagatta aaatgattta gtaaaatgag aaagatatgg
     2341 atttaagtat cgtagttccc atttataatg tcgagagtta tttggaagcg tgtctaaatt
     2401 ccatagaacc tatattaagt aatgaaaatg tcgaacttat ccttgtgaat gacgggtcaa
     2461 gagacggaag tgaagatata tgttataaat atatagat
//
LOCUS       DAXHNP010000205         2487 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.205, whole genome shotgun sequence.
ACCESSION   DAXHNP010000205 DAXHNP010000000
VERSION     DAXHNP010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.205"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..210
                     /locus_tag="ACFM5C_001999"
     CDS             <1..210
                     /locus_tag="ACFM5C_001999"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069635.1"
                     /translation="PTRQESIGNNRNRTNLDSRFRGNDGGKVAVFPINSCRSSFLGWR
                     EIKQKRAYQKITMQRTVLAILRFAP"
     gene            complement(285..1919)
                     /gene="groL"
                     /locus_tag="ACFM5C_002000"
     CDS             complement(285..1919)
                     /gene="groL"
                     /locus_tag="ACFM5C_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271863.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFC6069636.1"
                     /translation="MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAF
                     GGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAE
                     GMKYVTAGMNPTDLKRGIDKAVAALVDELKNIAKPCDTSKEIAQVGSISANSDEQVGA
                     IIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP
                     FVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAV
                     KAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLEDLGQAKRIEIGKENTTIID
                     GFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESP
                     LRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAA
                     SIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMGGMM"
     gene            complement(2012..2302)
                     /locus_tag="ACFM5C_002001"
     CDS             complement(2012..2302)
                     /locus_tag="ACFM5C_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFC6069637.1"
                     /translation="MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVG
                     AGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK"
BASE COUNT          494 a          667 c          656 g          670 t
ORIGIN      
        1 ccaacgcggc aggaatctat cggaaataac cgaaaccgga cgaacctaga ttcccgcttt
       61 cgcgggaatg acggcggaaa ggttgctgtt tttccgataa attcctgccg ctcttcgttt
      121 ttgggatggc gggaaataaa acaaaagcgc gcgtatcaaa aaataacaat gcaaagaacg
      181 gtgttggcaa ttttaaggtt tgcgccttag ccgcacttat tcgcaaaaaa accgcacggc
      241 gttgaccgtg cggcttgttg tctgaaggct tcagacggca ttgcttacat catgccgccc
      301 ataccaccca tgccgcccat atcaggcata gccggtttgt cttcagggat ttcagcaatc
      361 atgcagtctg tggtcagcat caggccggcg atagacgcgg cgtgttgcag cgcggaacgg
      421 gttactttgg cggggtcgag tacgcccatt tcgatcatgt cgccgtattc gccgctgcca
      481 gcgttgtaac catagttgcc tttgccttcc aacactttgt tcacaaccac gctgggttcg
      541 ccgcctgcgt tggcaacgat ttggcgcagc ggagactcaa cggcgcgcaa gacgatttgt
      601 acgcctgcgt cttggtctgc attgccggtg tgcaggtttt ccagagcggc acgggcgcgc
      661 aacagggcta cgccgccgcc tgcgaccacg ccttcttcaa cggctgcgcg ggtagcgtgc
      721 agcgcgtctt ccacgcggtc ttttttctct ttcatttcga cttcggtagc ggcgccgact
      781 ttgatcactg ccacgccgcc tgccaattta gccacgcgct cttgcagttt ttctttgtcg
      841 taatcgctgg ttgcggtttc gatttgttgg cggatttcgg caacacgcgc ttcgatttgg
      901 gctgcgtcgc caaagccgtc gatgatggtg gtgttttctt taccgatttc gatgcgtttg
      961 gcttgaccca agtcttccaa agtcgctttt tccagagaca ggccgacttc ttcggaaatc
     1021 accacgccgc cggtcaggat agcgatgtct tgcagcatcg ctttgcggcg gtcgccgaag
     1081 cccggagctt tgacggcaac ggttttcagg atgcctcgga tgttgttcac caccaaagtc
     1141 gccaaggctt cgccttctac gtcttcagcg ataatcaaca gcggacggct ggctttcgcc
     1201 acttgttcca aaacaggcag caggtcgcgg atgttgctga tttttttgtc aaacagcaat
     1261 acaaacggat tgtccaaagc agcgatttgt ttttcagcat cgttgatgaa gtaaggggac
     1321 aggtagccgc ggtcgaactg cataccttca accacgtcca gctcgttttc caaagatttg
     1381 ccgtcttcaa cggtaatcac gccttctttg ccgacttttt ccatcgcttc ggcgataatc
     1441 gcgccgactt gttcgtcaga gttggcggaa atcgagccga cttgggcgat ttctttggaa
     1501 gtatcgcaag gtttggcgat gtttttcagc tcgtcaacca aagcggcgac ggctttgtcg
     1561 ataccgcgtt tcaggtcggt cggattcata cctgcggtaa catatttcat gccttcggca
     1621 acgatggatt gtgccagtac ggtggcggta gtcgtaccgt cgcccgccac gtcgttggtt
     1681 ttggacgcaa cttctttcac catttgcgcg cccatatttt caaacttgtc tttcagttcg
     1741 atttctttgg cgacggttac gccgtctttg gtgatgtgcg ggccgccgaa agcgcggtca
     1801 accactacgt tgcggccttt gggacccagg gttacgcgca cggcgtttgc caaaatgttc
     1861 acgccgttta ccattttttg gcggacttca ttgccgaact gtacgtcttt tgctgccatt
     1921 tcaattctcc aaaaatcatt aaaactgtct gataaaaccg tttatgccgt ctgaaggcgg
     1981 tttgccgttt cagacggcat cgtgtccata tttatttttc aacgatgccg aagatgtctt
     2041 cttcgcgcat caccaacagc tcttcgccgt cggctttgac ggtttggccg ctgtatttgc
     2101 cgaagatgat tttgtcgccg actttgacat ccagcggacg gcgcgcgccg tctttaccga
     2161 ttttgcccgc gcccacggcg atgacttcgc ccatatcggg tttttcggcg gccgcacccg
     2221 gcaaaacgat acccgatgcg gttttttctt cagcttccaa gcgtttgacg acgacgcggt
     2281 cgtgtaaagg acggatggtc atatttatgc tccgataaaa tggtttgaaa acaatcatct
     2341 gcccgaacgg ttcggacaga ttgaagtgga aaccgggctg ccgcctgccg gccgcccgta
     2401 tgaatcggca aaattagggt gtgtgcgggc aaattcaagt gaggcggaaa aaatttattt
     2461 ccgccgtttt ttatagtgga ctaaatt
//
LOCUS       DAXHNP010000206         2470 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.206, whole genome shotgun sequence.
ACCESSION   DAXHNP010000206 DAXHNP010000000
VERSION     DAXHNP010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.206"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(13..819)
                     /locus_tag="ACFM5C_002002"
     CDS             complement(13..819)
                     /locus_tag="ACFM5C_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HFC6069638.1"
                     /translation="MPTVFIFLTAVYAGLGAFAWHCQQQGRGRDYPWKTELPVLGAAL
                     TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAAL
                     MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRSF
                     SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
                     SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILNR"
     gene            1039..2409
                     /gene="ffh"
                     /locus_tag="ACFM5C_002003"
     CDS             1039..2409
                     /gene="ffh"
                     /locus_tag="ACFM5C_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFC6069639.1"
                     /translation="MLDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVA
                     LPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
                     VLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
                     PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
                     FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
                     EKINGLEPFHPDRLASRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLHKGKGFDLNDF
                     KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
                     ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRMAKGMKGMK
                     GMFPGL"
BASE COUNT          678 a          625 c          643 g          524 t
ORIGIN      
        1 tgttggctct tcttatctgt tcagaatgat ttccaatacg aacttgctgc ccatataggc
       61 aatcatcagg ctgacaaatc cgatgatggt ccacacggcg gcttttttgc cgcgccatgc
      121 ggtcatgctg tgcttgagca gcagtccgcc gtaaatcagc catgacaata tgccgaatac
      181 ggttttatgg gtaaaggtca tgggtttgcc gaatacggct tcggcaaaaa atgttccgct
      241 gacgacggaa taggtcagca ggatgaaacc tgcccacatg gcctggaaca tgagtttttc
      301 caaactgagc agcgacggca ggaatcctgc gagcttggag aagctcctgc ggtgcaggct
      361 gcgattcagc agcagggtca aaacggacaa taatgttgcg atgccgaaca gcccgtatgc
      421 aagcagcgaa gttccgatat gcagcataaa gggaaggtcg gtaatttcat atcccgagaa
      481 ttttccagga aaaaccaaac ctgacagcag catcagtgcg gcgcaaggat acagcagcaa
      541 ctgcactccg cgcagcggat aaaagaagct gccggcaaaa taaataaaca gcatcatcca
      601 aacaatcagg ctgccggaat acccgaagcc cataatgatg attttgtctt gaatgaccgg
      661 catcagcagt gccgcgccgt ggacggtcaa tgccgcgccc aaaaccggca attccgtctt
      721 ccacgggtaa tcccgaccgc gcccctgctg ttggcagtgc catgcaaatg cacccaatcc
      781 tgcgtaaacc gccgtcaaaa agatgaaaac tgtcggcatg gtggactttc tctatctata
      841 ctgttgcgcc gtctgcggcc gcttatgaaa tattggaact tttaacgttg gaattgtaaa
      901 atccccgttt cgggcaagcc ttgacggatt tgccgatatg ctgtccggca cacaagccgc
      961 atcaaattat tttgatttta ttttaacaaa gaatgcccct gatggggcaa gctattctta
     1021 ttcagaccaa ggaccagtat gttagacaat ttaaccggcc gcttcagcaa tgtcttcaaa
     1081 aacatccggg ggcaggccaa actgaccgaa gacaatatta aagaggcctt gcgcgaagtc
     1141 cgcctcgccc tgcttgaggc ggatgtcgcc ctgcctgtcg tcaaagagtt catcaacaac
     1201 gtcaaagaaa aggccctcgg tcaggaagta gcgggcagcc tgacgccgga tcaggcattt
     1261 atcggcgtgg tcaacaaagc cctgaccgaa ctgatgggca gggaaaacaa aacgctggat
     1321 ttgtcggttg cgccgcccgc cgtcgtgttg atggcaggtt tgcagggcgc aggcaagacg
     1381 acgaccgtcg gcaaactcgc ccgcctgttg aaaaacgatc agaagaaaaa ggttttggtg
     1441 gtatccgccg acgtttaccg tcctgccgcg attgaacagc tgcgtctgtt ggccgaacag
     1501 gtcggcgtgg attttttccc gtccgatacc aaccaaaaac cggttgaaat tgcaactgcc
     1561 gccgtcgatt acgccaaaaa acatttttac gatgtattga tggtcgatac cgccggccgt
     1621 ttggcaatcg atgaagagat gatgaacgaa atcaaagccc ttcacgcggc ggttaacccg
     1681 gtggaaactt tgttcgtcat cgatgcgatg ctgggtcagg atgcggtgaa cactgctcag
     1741 gcatttaatg aagccctgcc gctgaccggt gtcgtattga ccaagatgga cggcgattcg
     1801 cgcggcggcg cagctttgtc cgtgcgccac gtaaccggca aaccgattaa atttatcggt
     1861 gtcggcgaaa aaatcaacgg cctcgaacct ttccaccccg accgtcttgc cagccgtatc
     1921 ctcggcatgg gcgacgtatt gaccctgatt gaagacgttc aaaaaggtat tgatgaagaa
     1981 gccgccgcca aaatggcgaa aaagctgcac aaaggcaaag gcttcgacct caacgacttt
     2041 aaagaacaaa tccagcaaat gcgcaatatg ggcggtttgg aaaacctgat gtcgaaaatg
     2101 ccgggcgaac tgggtcaaat ctcgaaacaa atccccgaag gaacggctga aaaagcgatg
     2161 ggcaaagtag aagccatcat caactcgatg acccctaaag aacgcgccaa ccctgccctg
     2221 ctcaaagcca gccgcaaacg ccgtattgca atgggtgcgg gcacgaccgt acaggaagtg
     2281 aacaaattgc tcaaacagtt tgaacaaatg caacaaatga tgaagatgtt cagcggcaac
     2341 ggcttgggca aactgatgcg tatggcgaaa ggaatgaagg gaatgaaagg aatgttcccg
     2401 ggtttgtaag ccgatttgac cgaaaacgcc gtctaaaatt tcagacggcg tttttgtttt
     2461 atattctgat
//
LOCUS       DAXHNP010000207         2466 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.207, whole genome shotgun sequence.
ACCESSION   DAXHNP010000207 DAXHNP010000000
VERSION     DAXHNP010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.207"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            69..1424
                     /locus_tag="ACFM5C_002004"
     CDS             69..1424
                     /locus_tag="ACFM5C_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC45 family MFS transporter"
                     /protein_id="HFC6069640.1"
                     /translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
                     IFQTLGADPHSLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLLYGTLIAV
                     IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKGY
                     AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLIITSAF
                     TIFKVKEYDPETYARYHGIDVAANQEKANWFELLKTAPKAFWTVTLVQFFCWFAFQYM
                     WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
                     GYFGCLALGALGFFSVFFIGNQYALVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGT
                     YLGLFNGSICMPQIVASLLSFVLFPMMGGLQANMFLVGGVVLLLGAFSVFLIKETHGG
                     V"
     gene            1428..2438
                     /locus_tag="ACFM5C_002005"
     CDS             1428..2438
                     /locus_tag="ACFM5C_002005"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HFC6069641.1"
                     /translation="MSDTPATRDFGLIDGRAVTGYVLSNRRGTRVCVLDLGGIVQEFS
                     VLADGVRENLVVSFDDAASYADNPFQINKQIGRVAGRIRGAAFDINGRTYRVEANEGR
                     NALHGGSHGLAVTRFNAVAADGRSVVLRSRLQQSADGYPNDLDLDISYRLDEDDRLTV
                     SYRATALGDTVFDPTLHIYWRLDAGLHDAVLHIPQGGHIPADAEKLPVSTVSDDLEVF
                     DFSRPKPLDAAVAALRRETGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIYSDRNGL
                     VIFTAAPQDFARHDAGVYDALATEAQTLPDSLHWPEFGNIRLNKGDTREATIAYGIES
                     LS"
BASE COUNT          457 a          668 c          738 g          603 t
ORIGIN      
        1 ggcgaggcaa cgccgtactg gtttttgtta atctactata cttttcaaat caaaaaagga
       61 tttaccttat gtcggaatat acgcctcaaa cagcaaaaca aggtttgccc gcgctggcaa
      121 aaagcacgat ttggatgctc agtttcggct ttctcggcgt tcagacggcc tttaccctgc
      181 aaagctcgca gatgagccgc atcttccaga cgctcggtgc cgatccgcac agcctcggct
      241 ggttctttat cctgccgccg ctggcgggga tgctggtgca gccgattgtc ggccattact
      301 ccgaccgcac ttggaagccg cgtttgggcg gccgccgtct gccgtatctg ctttatggca
      361 cgctgattgc ggttattgtg atgattttga tgccgaactc gggcagcttc ggtttcggct
      421 atgcgtcgct ggcggctttg tcgttcggcg cgctgatgat tgcgctgttg gacgtgtcgt
      481 caaatatggc gatgcagccg tttaagatga tggtcggcga catggtcaac gaggagcaga
      541 aaggctacgc ctacgggatt caaagtttct tagcaaatac gggcgcggtc gtggcggcga
      601 ttctgccgtt tgtgtttgcg tatatcggtt tggcgaacac cgccgagaaa ggcgttgtgc
      661 cacaaaccgt ggtcgtagca ttctatgtgg gcgcggcatt actgattatt accagtgcgt
      721 tcacaatctt caaagtcaaa gaatacgacc cggaaaccta tgcccgttac cacggcatcg
      781 atgtcgccgc gaatcaggaa aaagccaact ggttcgaact cttaaaaacg gcacctaaag
      841 cgttttggac ggttactctg gtacagtttt tctgctggtt cgccttccaa tatatgtgga
      901 cttactcggc aggcgcgatt gcggaaaacg tctggcacac cactgatgcg tcttccgtag
      961 gttatcagga ggcgggcaac tggtacggcg ttttggcggc ggtgcagtcg gttgcggcgg
     1021 tgatttgttc gtttgtattg gcgaaagtgc cgaataaata ccataaggcg ggttatttcg
     1081 gctgtttggc tttgggcgcg ctcggctttt tctccgtttt cttcatcggc aaccaatacg
     1141 cgctggtgtt gtcttatacc ttaatcggca tcgcttgggc gggcattatc acttatccgc
     1201 tgacgattgt aaccaacgcc ttgtcgggca agcatatggg cacttacttg ggcctgttta
     1261 acggctctat ctgtatgccg caaatcgtcg cttcgctgtt gagtttcgtg cttttcccga
     1321 tgatgggcgg tttgcaggcc aatatgttct tggtaggggg cgtcgtcctg ctgctgggcg
     1381 cgttttccgt gttcctgatt aaagaaacac acggcggggt ttgagcgatg agcgataccc
     1441 ccgctacccg cgatttcggt ctgatcgacg ggcgtgccgt aaccggctat gtgctgtcca
     1501 accggcgtgg tacgcgtgtc tgcgtgctgg acttgggcgg gattgtgcag gaattttccg
     1561 ttttggcaga cggcgtgcgc gaaaacctcg tggtgtcgtt cgatgatgcg gcttcctatg
     1621 cggacaatcc gtttcagatt aacaaacaga tagggcgcgt ggccggacgc atccgcggtg
     1681 cggcgttcga catcaacggc aggacttacc gcgtggaggc caacgaaggc aggaacgcgc
     1741 tgcacggcgg ttcgcacggg ctggccgtta cccgtttcaa cgcggtggcg gcagacggcc
     1801 gttcggtggt gctgcgcagc cgcctgcaac agtcggccga cggttatccc aacgatttgg
     1861 atttggatat ttcctaccgc ttggacgagg acgaccggct taccgttagc tatcgcgcca
     1921 ccgcgctcgg cgacacggtg ttcgacccga cgctgcacat ttactggcgg ctggacgcgg
     1981 gcctgcacga tgcggttctg catattccgc agggcggaca tattccggcc gatgccgaaa
     2041 aactgcccgt ctcaacggtt tcagacgacc tcgaagtatt tgatttcagc cggcccaagc
     2101 cgctggatgc cgccgttgcc gccctgcgcc gcgaaacggg tcgggccggt tttgacgacg
     2161 cttaccgcgt gccgtccgat ataggccgtc ccgccgctgt gttgcaagcc ggacgccgcc
     2221 gtcgtatcag catatacagc gaccgcaatg gcttggtcat ctttaccgcc gccccgcagg
     2281 atttcgcgcg gcacgatgcg ggcgtttacg acgcgctggc gaccgaggcg cagacgctgc
     2341 ccgacagcct gcattggccc gagttcggca atattcgtct gaacaagggt gataccaggg
     2401 aggcgacgat tgcttacggc atcgaatccc tttcttagga gcttcctaac accggttgca
     2461 gacggc
//
LOCUS       DAXHNP010000208         2385 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.208, whole genome shotgun sequence.
ACCESSION   DAXHNP010000208 DAXHNP010000000
VERSION     DAXHNP010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.208"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..372
                     /locus_tag="ACFM5C_002006"
     CDS             <1..372
                     /locus_tag="ACFM5C_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
                     /protein_id="HFC6069642.1"
                     /translation="AAANKGKCQDGAIGAAVGEILGEALLDGRDPGSLNVKDRAKIIA
                     KAKLAAGTVAALSKGDVNAAANAAAVAVESNALSKERMDKLTKCLSGKTCSTTMEKVN
                     AIKKDEQFSKVIDTEIQKSLF"
     gene            410..892
                     /locus_tag="ACFM5C_002007"
     CDS             410..892
                     /locus_tag="ACFM5C_002007"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069643.1"
                     /translation="MSIKYIAMPAAWKYMPTDVSRVAKEVFGYLYNSQGASTRFDKYF
                     NTIDNRADFFAASNLYEQNLGSKARWFGGADFVSRAAITGLGADGEASYITFAAGKVV
                     GNPPIYEWRAASGNALIVNGFYNFRDLFNKKTNPREWDIQQLKSEQKLLQPIQPKIFE
                     "
     gene            1072..1506
                     /locus_tag="ACFM5C_002008"
     CDS             1072..1506
                     /locus_tag="ACFM5C_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069644.1"
                     /translation="MNKNYLFYLIQNIKSIFLIGGVFFGLLIFSGLWGNDFKLSFLGV
                     IDFIFGMVGGGFIVMLWFLIPVILSTLFRWVFQNQLAVSVILTFIVFYTYGYFSLFNS
                     SERVGSFWYLVIPTIMFIGLSEWFIYKSSVHSLGENVTPRSN"
     gene            complement(1574..1842)
                     /locus_tag="ACFM5C_002009"
                     /pseudo
     CDS             complement(1574..1842)
                     /locus_tag="ACFM5C_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244123.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
     gene            1841..2014
                     /locus_tag="ACFM5C_002010"
     CDS             1841..2014
                     /locus_tag="ACFM5C_002010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069645.1"
                     /translation="MIKQVANNLPDGSPAKAAVFKAEREGKLKTAIAGVDRQTGKAVI
                     LSVKVPSKTNIRR"
     gene            2017..>2385
                     /locus_tag="ACFM5C_002011"
     CDS             2017..>2385
                     /locus_tag="ACFM5C_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HFC6069646.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCPEAIDYVDERKGVP
                     LAAMRHILMYTEAAASHAYLFEHDLNKFKQYAYVAGKLGILRSVNSTDPEPFFFPCDM
                     LNIQDPMFLMLMSDSPQLREF"
BASE COUNT          721 a          382 c          548 g          734 t
ORIGIN      
        1 gcggcggcga ataagggcaa gtgtcaggac ggcgcgatag gagcggcggt cggtgaaatc
       61 ctcggcgaag ccctactgga cggcagagac cctggcagcc tgaatgtgaa ggacagggca
      121 aaaatcattg ctaaggcgaa gctggcagca gggacggttg cggcgttgag caagggggat
      181 gtgaatgctg cggcgaatgc ggctgctgtg gcggtagaga gtaatgcgct tagcaaggaa
      241 agaatggata aattgacaaa atgcctttcc ggtaaaactt gttctactac gatggaaaaa
      301 gtaaatgcca tcaaaaagga tgaacaattt agcaaagtaa ttgatacgga aattcaaaaa
      361 agtctgttct aggaacccat tgggcgatgg ttgcagaaac ggcattaata tgtctattaa
      421 atatattgcc atgcctgctg cgtggaagta tatgcctacg gatgtatcac gggttgccaa
      481 agaagttttt ggctatttat ataactcaca aggggcatct acaagatttg acaagtattt
      541 caacaccatt gacaatcgtg cagatttctt tgctgccagc aatctttatg agcaaaattt
      601 gggttcaaaa gcacgatggt ttggtggagc tgattttgta tcgcgtgctg ctataactgg
      661 gttaggggca gacggagaag cttcttatat aacttttgcg gcaggtaaag ttgttggtaa
      721 tcctccaatt tatgaatgga gggctgcgtc aggcaatgca ctgatagtaa atggatttta
      781 taattttaga gacttgttca ataaaaaaac taatcctagg gagtgggata ttcaacagtt
      841 gaaaagcgag caaaagttat tacagcctat tcaaccaaaa atatttgagt aatgagaagg
      901 attatttgtc attgattaaa ggggtaacat caaataagat attttcaata attccaaatc
      961 ctttagatga gaggaaaaaa tagaggatgg aattaatatg ttagattaca aatctagaat
     1021 taaatatggt tgtaagctta tgggatattc tgagaaacag ggatgcaagc catgaataaa
     1081 aattatttat tttatcttat tcaaaatatt aaatctattt tcttaatagg tggagtattt
     1141 tttggccttt taattttttc aggtttatgg ggtaatgatt ttaaactatc ttttttaggg
     1201 gtaatagatt ttatatttgg gatggtaggg ggtgggttta tagttatgtt atggtttcta
     1261 attccagtga tattatcaac tttattcaga tgggtatttc aaaatcaact tgctgtatct
     1321 gtcatattaa ccttcattgt tttttataca tatgggtact tttctttatt taattcatct
     1381 gaaagagtcg gtagtttttg gtatttggta atcccaacca taatgtttat tggactgtct
     1441 gaatggttta tctataaatc tagcgtgcat agtttaggtg aaaatgtaac tccacgttcc
     1501 aattgaagaa aaagattgtc tgaaaactaa atttaatttc agatgacctt agattcggat
     1561 ttcaagtaca acactagggt atcgatggtt ggaacaaatt caagaataaa acacttggcg
     1621 tttcgtagcc aagtgttttt ctcggtcggt ggttcaactc atcttgaacc ctacgtatct
     1681 cccgatcgct gatgtttcgg aaaacggttt gtttggggaa tattgtcgga tgagtccatt
     1741 ggtgttttca ttcagccctt tctcccaaga atggtaaggg cggtaaaaat aggtttccgc
     1801 cttcaatgtt ttggccattt ggatgtgtcg gtagaattct ttgattaaac aagttgcaaa
     1861 taacttacct gatggtagtc ctgctaaagc tgctgtcttc aaagcggagc gggaaggcaa
     1921 attaaaaacg gcaatagcag gcgttgatcg tcaaacaggt aaggccgtta ttctttctgt
     1981 caaagttcct tctaaaacca atataaggag ataacaatgg ggcacaatat gatgaccacc
     2041 caaaaatggt atgagcatat tactaatgta atcataggca atactgctaa tttcaatagc
     2101 ggttgccctg aagctataga ttatgtagat gaaagaaaag gcgttccact tgcagcaatg
     2161 agacatattt taatgtacac tgaagctgcg gcttcccatg cctatctatt tgaacatgat
     2221 cttaataaat tcaagcaata tgcttatgtt gcaggaaagc tgggtatttt gcggagtgta
     2281 aattctacag accctgaacc cttcttcttt ccctgtgaca tgctcaacat tcaagatccg
     2341 atgtttctga tgctgatgag cgacagcccg cagctgcgtg agttt
//
LOCUS       DAXHNP010000209         2364 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.209, whole genome shotgun sequence.
ACCESSION   DAXHNP010000209 DAXHNP010000000
VERSION     DAXHNP010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.209"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..290)
                     /locus_tag="ACFM5C_002012"
     CDS             complement(<1..290)
                     /locus_tag="ACFM5C_002012"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069647.1"
                     /translation="MAGLFVKDIHRVSFSVETPTFRAVESEFIWEGRNPFQIRATHRA
                     VLYVSSCVLKHFSDFSVETQAGDFSRLPKMPSEKRFGASLRCLRYSGLTKTST"
     gene            261..2141
                     /locus_tag="ACFM5C_002013"
     CDS             261..2141
                     /locus_tag="ACFM5C_002013"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0016896 - RNA exonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease catalytic domain-containing
                     protein"
                     /protein_id="HFC6069648.1"
                     /translation="MNIFYEESGQFKVAAVVQKNDATYQVDTQHGKRTKVKANNVFAE
                     FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIA
                     LYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
                     ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELGKKTGGITSIPQYLQDGFEIKYFP
                     KGTGFPDLPLPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLGNGIKRVGIHIAAPS
                     LAIKQGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGTYRPSISIYFDVDNE
                     FNVGAPTCKIEAVNIAENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAITL
                     QKARGKYEPNRAPQYDYSIELDKEDNVSVVRRERGSPIDTLVSEMMILANSTWAQMLH
                     DNDLPGLFRVQPTGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
                     TAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKE
                     DLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGN
                     AV"
BASE COUNT          642 a          698 c          558 g          466 t
ORIGIN      
        1 gtactggttt ttgttaatcc actataacgc aagcaccgca aagacgcgcc aaaccttttt
       61 tcagacggca ttttcggtaa tctgctaaaa tcgcccgctt gagtttccac agaaaaatcc
      121 gaaaaatgtt tcaacacaca ggacgacaca taaagcaccg ccctatgtgt tgccctgatt
      181 tggaaggggt tgcgcccctc ccaaataaat tctgattcta ccgccctaaa ggttggggtt
      241 tcaaccgaaa aggaaacacg atgaatatct tttacgaaga gtccggccaa ttcaaagttg
      301 ccgccgtcgt ccaaaaaaac gacgccacct accaagtcga tacccaacac ggcaaacgca
      361 ccaaagtgaa ggcaaacaac gtctttgccg agtttgacgg cgatatggcg gcgtttttgg
      421 aaaacgcgca ggcacaggcg gcggacatcg acaccgattt attgtgggaa gtatgcggcg
      481 aagaggaatt taccgccgaa gccatcgccg aagaatatta cggtcatgcg ccgaccaaaa
      541 ccgagctggc ggcgactttg attgcgcttt acgccgcgcc gatgtatttc tacaaaaaag
      601 ctaaaggcgt gttcaaagcc gcgcccgaag aaactttgaa acaggcgctt gccgccatcg
      661 aacgcaaaaa gcagcaagac gcgcaaatcg acgcttgggc agaagccttg aaacgcggcg
      721 agatgccgtc tgaaatcgcg gcggatttga aaaccatcct gcacgcgccc gacaagcagt
      781 cgctgaccta caaagccttt accaaagccg ccgacgcgct gaaaacctct gcctacgaac
      841 tggggaaaaa aacgggcggc attacgtcca ttccccaata cctgcaagac gggtttgaaa
      901 tcaaatattt ccccaaagga acaggcttcc ccgaccttcc gcttcctgaa atgcctgact
      961 tacccaaagc cgacgttacc gccttttcca ttgacgacga atcgactacc gaagtggacg
     1021 acgctttaag cctgaccgat ttgggcaatg gcataaaacg cgtcggcatc cacattgccg
     1081 cgccgtcgct tgccattaag caaggcgaca aaatggaaaa aaacatcatg gaacgcttaa
     1141 gcacggttta ttttcccggc ggcaaaatca cgatgttgcc cgaaaactgg attgccgcgt
     1201 tcagccttga tgcaggtaca taccgccctt ccatcagcat ttatttcgat gtggacaacg
     1261 agttcaacgt cggcgcgccg acctgcaaaa tcgaagcggt caacatcgct gaaaacctgc
     1321 gtatccaagc catcgaaccg catttcaacg ccgaagcggg cttggacgaa gcgggcgaaa
     1381 tgatgttcgc ccaccatcaa gacctgattt ggttttatca attcgccatc accctgcaaa
     1441 aagcgcgcgg caaatacgag cccaaccgtg cgccgcaata cgattacagc atcgaattgg
     1501 ataaagaaga caacgtatcc gtcgtccgcc gcgaacgcgg ctcacccatc gatacgctgg
     1561 tcagcgagat gatgattctt gccaacagca cttgggcaca aatgctccat gacaacgacc
     1621 tgcccggcct cttccgcgtc caacccaccg gaaaagtacg catgagcacc aaatccgagc
     1681 cgcatatcgg catgggcgtg cagcattacg gctggtttac ctcgccgctg cgccgcgccg
     1741 ccgactacat caaccaaaag cagctgatca gcctgataga cgacactgcc gagccgctgt
     1801 atcaaaacag cgatgccgag cttttcgccg cactgcgcga ctttgatgcc gcctataccg
     1861 cctacgccga tttccaacgg cagatggaag cctactggag ccttgtgtac ctgcaacagc
     1921 aaggtacaag cgagctgacc gcgaccatcc tcaaagaaga cctcgtccgc atcgaaggcc
     1981 tgccgctggt cacgcgcgcg accggtattc cgtttgacgc gctgcccaaa tcacaggcat
     2041 tgttcaaaat caccgaattg gatgccgaga agcagtttgt ctcgctcaac tacatcaagg
     2101 cagtcgcacc cgcgggcaca acggcaggca atgccgtctg aagcccgata cggcaaactc
     2161 cggcaaaaac agaaacctga atctcatcat tcccacagtc gggaatccgg ttttttgggt
     2221 ttccgttgtt tttccgtttc aatgaacttc caagccgccg ttcccgataa atacccgcaa
     2281 tctaaaatcc cgtcattccc acgcagatgg gaatctaggt ttatccgcac agaaactgat
     2341 atgccgtcat tcccgcgaaa gcgg
//
LOCUS       DAXHNP010000210         2339 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.210, whole genome shotgun sequence.
ACCESSION   DAXHNP010000210 DAXHNP010000000
VERSION     DAXHNP010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.210"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            44..2257
                     /locus_tag="ACFM5C_002014"
     CDS             44..2257
                     /locus_tag="ACFM5C_002014"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6069649.1"
                     /translation="MTAISPIQDTQSATLQELREWFDSYCAALPNNDKKLVLAARSLA
                     EAHYPADAATPYGEPLPDHFLGAAQMVHELDLLPDAVAATLLADIGRYVPDWNLLVSE
                     RCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIK
                     LAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE
                     KYREIALLLDEKRTERLEYIENFLNILRTELKKYNIHFEVAGRPKHIYSIYKKMVKKK
                     LSFDGLFDIRAVRILVDTVPECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTV
                     IVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWREN
                     MAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPTGATPIDFAYALHSSIGDRCRGA
                     KVEGQIVPLSTPLENGQRVEIITAKEGHPSVNWLYEGWVKSNKAIGKIRAYIRQQNAD
                     TVREEGRVQLDKQLAKLTPKPNLQELAENLGYKKPEDLYTAVGQGEISNRAIQKACGT
                     LNEPPPVPVSETTIVKQSKIKKGGKNGVLIDGEDGLMTTLAKCCKPAPPDDIVGFVTR
                     DRGISVHRKTCPSFRHLAEHAPEKVLDASWAALQEGQVFAVDIEIRAQDRSGLLRDVS
                     DALARHKLNVTAVQTQSRDLEASMRFTLEVKQVNDLPRVLASLGDVKGVLSVTRL"
BASE COUNT          599 a          761 c          566 g          413 t
ORIGIN      
        1 ctgttacaat aaactcgttt ttatcggaac ggaagacccc atcatgaccg ccatcagccc
       61 gattcaagac acgcaaagcg cgactctgca agaattgcgc gaatggttcg acagctactg
      121 cgccgcgctg ccgaacaacg ataaaaaact tgtcttagcc gcccgttcgc tggcggaagc
      181 acattacccc gccgatgccg ccacgccgta tggcgagccg ctgcccgacc acttcctcgg
      241 cgcggcgcaa atggttcatg aactcgacct gctccccgat gccgtcgccg ccaccctgct
      301 tgccgacatc ggacgctacg tccccgactg gaacctattg gtttccgaac gctgcaacag
      361 taccgtcgcc gagctggtca aaggtgtgga cgaagtgcag aaactcaccc acttcgcccg
      421 ggtggacagc ctcgccacac cggaagaacg cgcccagcag gcagaaacta tgcggaaaat
      481 gctgctggcg atggttaccg acatccgcgt cgtgttaatc aaactggcga tgcgtacgcg
      541 caccctgcaa tttttaagca acgcccccga cagccccgaa aaacgcgccg tcgccaaaga
      601 aaccctcgac atcttcgccc cgctcgccaa ccgtttgggc gtgtggcagc tcaaatggca
      661 gctcgaagat ttgggcttcc gccatcaaga gcccgaaaaa taccgcgaaa ttgccctgct
      721 tttggacgaa aaacgtaccg aacgcctcga atacatcgaa aacttcctta atatcctgcg
      781 tacggaactc aaaaaataca atatccactt tgaagtcgcc ggccgtccga aacacatcta
      841 ctccatttac aaaaaaatgg tgaagaaaaa actcagcttc gacgggttgt tcgacatccg
      901 cgccgtgcgg attctggttg ataccgtccc cgagtgttac accacactgg gcattgtcca
      961 cagcctctgg cagcccattc ccggcgagtt cgacgactac atcgccaacc cgaaaggcaa
     1021 cggctataaa agtttgcaca ccgtcatcgt cggcccggaa gacaaaggcg tggaagtgca
     1081 aatccgcacc ttcgatatgc accaattcaa cgaattcggt gtcgccgcgc actggcgtta
     1141 caaagagggc ggcaaaggcg attccgccta cgaacaaaaa atcgcctggt tacgccaact
     1201 tttggactgg cgcgaaaaca tggcggaaag cggcaaggaa gacctcgccg ccgccttcaa
     1261 aaccgagctt ttcaacgaca cgatttatgt tttgaccccg cacggcaaag tcctctccct
     1321 gcccacaggc gcgaccccca tcgacttcgc ctacgccctg cacagcagca tcggcgaccg
     1381 ttgccgcggt gcgaaagtcg aagggcagat tgtgccgctg tccaccccgc tcgaaaacgg
     1441 acagcgtgtc gaaatcatta ccgccaaaga agggcatcct tccgtcaact ggctttacga
     1501 aggctgggtc aaatccaaca aggcaatcgg caaaatccgc gcctacatcc gccagcaaaa
     1561 cgccgacacc gtgcgcgaag aaggccgcgt ccaactcgac aaacagcttg ccaaactcac
     1621 gcccaaaccc aacctgcaag agcttgccga aaatctcggc tacaaaaagc cagaagacct
     1681 ctacaccgcc gtcggacaag gcgaaatttc caaccgcgcc atccaaaaag cctgcggcac
     1741 gctgaacgaa ccgccgcccg tacccgtcag cgaaaccacc atcgtcaaac agtccaaaat
     1801 caaaaaaggc ggcaaaaacg gcgtgctcat cgacggcgaa gacggtctga tgaccacgct
     1861 tgccaaatgc tgcaaacccg cgccgcccga cgacattgtc ggcttcgtta cccgcgatcg
     1921 cggcatttcg gtacaccgca aaacctgccc ctctttccga cacctcgccg aacacgcgcc
     1981 cgaaaaagta ctggacgcaa gttgggcggc gttgcaggaa ggacaagtgt ttgccgtcga
     2041 tatcgaaatc cgcgcccaag accgctccgg gcttttgcgc gacgtatccg acgcgctcgc
     2101 ccgccacaaa ctcaacgtta ccgccgtgca aacccagtcc cgcgacttgg aagccagtat
     2161 gcggttcacg ctcgaagtca aacaggtcaa cgacctcccg cgcgtcctcg ccagcctcgg
     2221 cgacgtcaaa ggcgtattga gcgttacccg gctttaaata caaaaatgcc gtctgaaagc
     2281 cgaataacgc ttcagacggc attttgattg ccggggtttg ctattttttg ttgcatagt
//
LOCUS       DAXHNP010000211         2326 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.211, whole genome shotgun sequence.
ACCESSION   DAXHNP010000211 DAXHNP010000000
VERSION     DAXHNP010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.211"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            299..733
                     /locus_tag="ACFM5C_002015"
     CDS             299..733
                     /locus_tag="ACFM5C_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069650.1"
                     /translation="MDNKKEFINNLTNRYMWIYPLVLNILFLPFYQSYQSFFIALGCL
                     FALVRKMQSLDFKLQNHIVLLNIKSAWADKKVFLIRIVVSWLAVMEIWMCFISESSTW
                     VCGAFCLNSEILEKIFRGFGYSGSLYFLFILMIDLNKLRESI"
     gene            1009..1728
                     /locus_tag="ACFM5C_002016"
     CDS             1009..1728
                     /locus_tag="ACFM5C_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069651.1"
                     /translation="MKNKNYLLVFIVLHIALIVINIVFGYFVFLFDFFAFLFFANVFL
                     AVNLLFLEKNIKNKLLFLLPISIIIWMVIHISMINIKFYKFEHQIKEQNISSITGVIK
                     PHDSYNYVYDSNGYAKLKDNHRYGRVIRETPYIDVVASDVKNKSIRLSLVCGIHSYAP
                     CANFIKFAKKPVKIYFYNQPQGDFIDNVIFEINDGNKSLYLLDKYKTFFLIENSVCIV
                     LIILYLKFNLLLYRTYFNELE"
     gene            1715..>2326
                     /locus_tag="ACFM5C_002017"
     CDS             1715..>2326
                     /locus_tag="ACFM5C_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069652.1"
                     /translation="MSWNSFGNFMSARSSALAEFGNMVANLVSAKNEKDISKRNEYYK
                     QAGYSALLAFGNLASNIAPGSTSSHIVNGTNASVIASRLSGNISSAIQEHKDGKVNIN
                     RFQNILADLYSLGGLGSTLIEKNGNMQSWGIPLAIAGDIIAATAIATGDTGTISTEEF
                     YNFDNWKGFGYELFEDWSRWVYDWLPDGWNLWKELDRNRSGQYH"
BASE COUNT          798 a          284 c          420 g          824 t
ORIGIN      
        1 caaacaaaaa agagaaattt taatttcgct aaatcgcata aagattaatc aagagtatca
       61 ttaaatgata tgagtgagca tctataatgc caagaagagt tgttaagaca taacgattat
      121 tgaaatagat tgtaaaatag atacttagat agtctgaaaa acggatttgt gaaacttttt
      181 attacgcgcc atcatttgaa aatgaaactt aaaaaacact tatcataata aatattttct
      241 ttacgttgtt tgctaataaa ctcagtgcaa tatcagcgca atattttatg gaaattttat
      301 ggataacaaa aaagaattta ttaataattt aacaaatagg tatatgtgga tctatccatt
      361 ggtcttaaat attctatttc taccttttta ccagtcctac caatcttttt ttattgcgct
      421 tggttgtttg tttgcactgg ttagaaaaat gcaaagctta gattttaaat tacaaaatca
      481 tattgtattg ttaaatataa aaagtgcttg ggcagataaa aaagtatttt tgattaggat
      541 agtagtgtca tggttggcag taatggaaat atggatgtgt tttatttcgg aatcatcaac
      601 gtgggtatgc ggtgcttttt gtttaaatag tgaaatattg gaaaaaattt ttcgtggctt
      661 tggttattct ggtagtttat attttttatt tatattgatg attgatctca ataagttaag
      721 agagagtatt tgaatttcat tttttgtttg acttaaactc aaggagagta acaatgattg
      781 gtagtggtga tactaaacaa tgcaaaaaat tttctgcgtg tgatggaaaa taccacgtct
      841 acgatcccct cgccctagac ttggacggcg acggcataga aacagtcacc gccaaaggct
      901 tttcaggcag cctgaagact gagagagtga atacgatgag tatacactct atgccactaa
      961 attgatattc actaaatcat accagctata ttttatttaa tgagacatat gaaaaataaa
     1021 aattatttac tagtatttat agttttacat atagccttga tagtaattaa tatagtgttt
     1081 ggttattttg tttttctatt tgattttttt gcgtttttgt tttttgcaaa cgtctttctt
     1141 gctgtaaatt tattattttt agaaaaaaac ataaaaaaca aattattgtt tttattgccg
     1201 atttctatta ttatatggat ggtaattcat attagtatga taaatataaa attttataaa
     1261 tttgagcatc aaataaagga acaaaatata tcctcgatta ctggggtgat aaaaccacat
     1321 gatagttata attatgttta tgactcaaat ggatatgcta aattaaaaga taatcataga
     1381 tatggtaggg taattagaga aacaccttat attgatgtag ttgcatctga tgttaaaaat
     1441 aaatccataa gattaagctt ggtttgtggt attcattcat atgctccatg tgccaatttt
     1501 ataaaatttg caaaaaaacc tgttaaaatt tatttttata atcaacctca aggagatttt
     1561 atagataatg taatatttga aattaatgat ggaaacaaaa gtttgtactt gttagataag
     1621 tataaaacat tttttcttat tgaaaacagt gtttgtatcg tattaattat tttatattta
     1681 aaatttaatt tgcttttata taggacttac ttcaatgagt tggaatagtt ttggtaattt
     1741 tatgagcgca cgctcatccg cgttagcaga atttggaaat atggttgcta atttagtttc
     1801 tgcaaaaaat gagaaagata tctcgaaacg taatgaatat tacaaacaag ctggttatag
     1861 tgcattatta gcatttggta atttggctag taatattgca ccaggtagta cgtcatcgca
     1921 tattgtaaac ggaacaaatg cctctgtgat tgcaagccgt ctctctggaa atatatcttc
     1981 agctattcag gagcataaag atggtaaagt taatatcaac cgttttcaaa atattttagc
     2041 ggatttatat tcattgggag ggttaggaag tacattaata gagaagaatg gaaatatgca
     2101 gagttggggg attccattag caattgctgg agatataatt gcagcaacgg ctattgccac
     2161 aggagatact ggtacgatat ctacagagga attttataat tttgacaact ggaaaggttt
     2221 tgggtatgag ctatttgaag actggtctcg ttgggtatac gactggctgc ccgacggctg
     2281 gaatctgtgg aaagaattgg acagaaaccg ttcaggccaa taccac
//
LOCUS       DAXHNP010000212         2324 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.212, whole genome shotgun sequence.
ACCESSION   DAXHNP010000212 DAXHNP010000000
VERSION     DAXHNP010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.212"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(61..1470)
                     /gene="dacB"
                     /locus_tag="ACFM5C_002018"
     CDS             complement(61..1470)
                     /gene="dacB"
                     /locus_tag="ACFM5C_002018"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HFC6069653.1"
                     /translation="MNFPKTAASLLLLLASLAAHALDTGRIPQNEIAVYVQELDSGKV
                     IIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGS
                     GDPVFNQENLLAVQRQLREQGIRNITGHLMLDHSLWGEVGSPDDFEADSGSPFMTPPN
                     PTMLSAGMVMVRAERNAADSTDILTDPPLPHIFAQNNLQITASQAACPSIKKLMRASF
                     SDNTLKLRGNIPESCLGKPVGVRMFALDELIRQSFTNHWLLGGGRISDGIGIADTPEG
                     AQTLAVAHAKPMKEILTDMNKRSDNLIARSVFLKLGGDGKLPAVSEQAASAVRRELAV
                     SGIDVADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQDFIDTLPIAGTDGTLRN
                     RFKQSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSGRAVSLLPDLDNFVANNI
                     ISGGDGWLDAKLMCKERRA"
     gene            1635..2201
                     /locus_tag="ACFM5C_002019"
     CDS             1635..2201
                     /locus_tag="ACFM5C_002019"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HFC6069654.1"
                     /translation="MAKKISILVGSLRRASFARKVALNAAEMFPEGWQAEIVEIGHLP
                     LYNFDYDDPAVEDVPLPESYTAFRETIKASDGILFVTSENNRTIPACLKNAVDIGSKP
                     NADVAWKNKPAGIISHSVGKMGGYSSQKNLRLALSYFDMPVTGQPEVFLGNSPTLFDE
                     NGKLIDSARDFVQSYINQFVGLIERNAK"
BASE COUNT          530 a          570 c          670 g          554 t
ORIGIN      
        1 cgagtttgtc ctagttatct aggacagccc cttaaattta atccactata ttttcctgtt
       61 tcaggctcgg cgttctttgc acatcagttt cgcatccagc cagccatcgc cgccggagat
      121 gatgttgttg gcaacgaagt tgtccaagtc gggcagcagg gaaacggcgc ggccgctgtt
      181 gatgatgacg accaccgcca tcggtttgtc gcccagccaa taacctgcaa gggcgcggac
      241 attgttgagc gtgccggttt ttaagcgcaa cagcccgccg ctttgtttga agcggttgcg
      301 taaagtcccg tctgtgccgg cgatgggcag cgtgtcgatg aaatcttgtg caaacgggct
      361 gaaataagcc gtttccaaca tttgcgccat cattctcgcc gttacccttt cttttctaga
      421 cagacccgaa ccgttttcca aaaccaaatc cgcaacatcg atgcccgaca cggcaagttc
      481 gcgccggacg gcagacgctg cctgttcgga aacggcgggc agtttgccgt cgccgccgag
      541 tttgaggaag acggaacgcg caattagatt gtccgaacgc ttgttcatgt ccgtcaaaat
      601 ttccttcatc ggtttggcgt gtgcaacggc aagcgtctgc gcgccttccg gcgtgtcggc
      661 tatgccgata ccgtctgaaa tccgtccgcc gccgagcagc cagtggttgg taaaactttg
      721 ccggatcagt tcgtcaagcg cgaacatccg gacaccgaca ggcttgccca aacagctctc
      781 gggaatattg ccgcgcaatt tcagcgtatt gtccgaaaaa gatgcacgca tcagtttttt
      841 gatcgaaggg caggcagctt gggaggcggt aatttgcaag ttgttttggg cgaaaatatg
      901 cggcaaaggc ggatcggtga ggatgtcggt actgtcggcg gcattgcgtt cggcgcgcac
      961 cataaccata ccggcagaca gcatagttgg attggggggc gtcataaacg gcgaaccgct
     1021 gtcggcttcg aaatcgtcgg ggctgccgac ttcgccccac aggctgtggt cgagcatcag
     1081 gtgtcccgtg atattgcgta tgccttgttc gcgcaactgg cgttggacgg caagcaggtt
     1141 ttcctgattg aaaacggggt cgccgctgcc cgcccaatac aggtttccgt caagcgtgcc
     1201 gtcgtttacc gtaccgttgc ttttaaactc ggtcgcccag cggtaattgc tgccgaaggt
     1261 tttgaaggcg gcaaacgcgg taacgagttt cattgtggag gcggggttga cggggacatc
     1321 cgagcggtgg tcaatgatga cttttccgct gtcaagctct tggacatata cggcgatttc
     1381 gttttgcgga atgcggccgg tatcgagcgc gtgtgcggcg agggaggcga gaagcagcag
     1441 cagggaggcc gctgttttgg ggaaattcat aggtaaatct gttacataaa aaaagcaatt
     1501 ataaggcaaa gccggataag tgggaacgct gtggcggcgg gccggcttgt ttgcagggga
     1561 aatcacatat ataataatcg ctatcattat gaaatgattg agacgcacaa acttaatatt
     1621 caggaggaat gattatggct aagaaaatca gtattttggt gggcagcctg cgccgagctt
     1681 cttttgcgcg caaagtggca ttgaatgcgg cggaaatgtt ccccgaaggc tggcaggcgg
     1741 aaatcgtcga aatcggacat ctgccgcttt acaatttcga ttatgacgac cctgcggtgg
     1801 aagatgtgcc gctgcccgaa agctacacgg ctttccgcga aacgattaag gcttcggacg
     1861 gcattttgtt cgttacgtcc gaaaacaacc gcaccattcc cgcctgtttg aaaaatgcgg
     1921 tggacatcgg ctcgaaaccg aatgccgacg tggcgtggaa aaacaaaccg gccggtatca
     1981 tcagccattc cgtcggcaag atgggcggtt acagttcgca aaaaaacctg cgccttgcgc
     2041 tgtcttattt cgatatgccc gtaaccggac agccggaagt gtttttgggc aattcgccga
     2101 cactgtttga tgaaaacggc aaattgatcg actcggcaag ggattttgtt cagtcatata
     2161 ttaatcagtt tgtcggtttg attgaaagaa atgccaaata aacaaaccaa gtcgaaaggc
     2221 cgcaaaaccg gttcgggttt tgcggctttt ttatatgggc tgggcagcgt caaggtttgc
     2281 cgtttgccgg ataatgcgcg gcaaatgacc ggcgtgttta tagc
//
LOCUS       DAXHNP010000213         2313 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.213, whole genome shotgun sequence.
ACCESSION   DAXHNP010000213 DAXHNP010000000
VERSION     DAXHNP010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.213"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..275
                     /locus_tag="ACFM5C_002020"
     CDS             <1..275
                     /locus_tag="ACFM5C_002020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069655.1"
                     /translation="NPHHRHSRAGGNPKTQRNRNLSEKTETPPTVIPAKAGIQQHNAA
                     GIYRKKQKPPPTVIPAKAGIQQPKNHRNLSAKTETPTAVIPAKAGI"
     gene            477..2246
                     /locus_tag="ACFM5C_002021"
     CDS             477..2246
                     /locus_tag="ACFM5C_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HFC6069656.1"
                     /translation="MNKIYRIIWNSALNAWVVVSELTRNHTKRASATVATAVLATLLS
                     ATVQANATDTDEDEELESVVRSALVLQFMIDKEGNGEIESTGDIGWSIYYDDHNTLHG
                     ATVTLKAGDNLKIKQSGKDFTYSLKKELKDLTSVETEKLSFGANGNKVNITSDTKGLN
                     FAKETAGTNGDPTVHLNGIGSTLTDTLAGSSASHVDAGNQSTHYTRAASIKDVLNAGW
                     NIKGVKTGSTTGQSENVDFVRTYDTVEFLSADTKTTTVNVESKDNGKRTEVKIGAKTS
                     VIKEKDGKLVTGKGKGENGSSTDEGEGLVTAKEVIDAVNKAGWRMKTTTANGQTGQAD
                     KFETVTSGTKVTFASGNGTTATVSKDDQGNITVKYDVNVGDALNVNQLQNSGWNLDSK
                     AVAGSSGKVISGNVSPSKGKMDETVNINAGNNIEITRNGKNIDIATSMTPQFSSVSLG
                     AGADAPTLSVDDEGALNVGSKDANKPVRITNVAPGVKEGDVTNVAQLKGVAQNLNNRI
                     DNVDGNARAGIAQAIATAGLAQAYLPGKSMMAIGGGTYRGEAGYAIGYSSISDTGNWV
                     IKGTASGNSRGHFGTSASVGYQW"
BASE COUNT          709 a          573 c          575 g          456 t
ORIGIN      
        1 gaaaccctca ccaccgtcat tcccgcgcag gcgggaatcc aaaaacgcaa cgcaacagga
       61 atttatcaga aaaaacagaa accccaccga ccgtcattcc cgcaaaagcg ggaatccagc
      121 aacacaacgc agcaggaatt tatcggaaaa aacagaaacc cccaccgacc gtcattcccg
      181 caaaagcggg aatccagcaa ccgaaaaacc acaggaatct atcagcaaaa acagaaaccc
      241 ccaccgccgt cattcccgca aaagcgggaa tctagacccg tcggcacgga aacttaccga
      301 ataaaacagt ttccttagat tccacgtcct agattcccgc cttcgcggga atgacgagat
      361 tttaagttgg gggaatttat cagaaaaccc ccaaccccca aaaaccgggc ggatgccgca
      421 ccatccgccc ccaaaccccg atttaaccat tcaaacaaac caaaagaaaa aacaaaatga
      481 acaaaatata ccgcatcatt tggaatagtg ccctcaatgc ctgggtagtc gtatccgagc
      541 tcacacgcaa ccacaccaaa cgcgcctccg caaccgtggc gaccgccgta ttggcgacac
      601 tgctgtccgc aacggttcag gcgaatgcta ccgataccga tgaagatgaa gagttagaat
      661 ccgtagtacg ctctgctctg gtgttgcaat tcatgatcga taaagaaggc aatggagaaa
      721 tcgaatctac aggagatata ggttggagta tatattacga cgatcacaac actctacacg
      781 gcgcaaccgt taccctcaaa gccggcgaca acctgaaaat caaacaaagc ggcaaagact
      841 tcacctactc gctgaaaaaa gagctgaaag acctgaccag tgttgaaact gaaaaattat
      901 cgtttggcgc aaacggtaat aaagtcaaca tcacaagcga caccaaaggc ttgaattttg
      961 cgaaagaaac ggctgggacg aacggcgacc ccacggttca tctgaacggt atcggttcga
     1021 ctttgaccga tacgcttgcg ggttcttctg cttctcacgt tgatgcgggt aaccaaagta
     1081 cacattacac tcgtgcagca agtattaagg atgtgttgaa tgcgggttgg aatattaagg
     1141 gtgttaaaac tggctcaaca actggtcaat cagaaaatgt cgatttcgtc cgcacttacg
     1201 acacagtcga gttcttgagc gcagatacga aaacaacgac tgttaatgtg gaaagcaaag
     1261 acaacggcaa gagaaccgaa gttaaaatcg gtgcgaagac ttctgttatt aaagaaaaag
     1321 acggtaagtt ggttactggt aaaggcaaag gcgagaatgg ttcttctaca gacgaaggcg
     1381 aaggcttagt gactgcaaaa gaagtgattg atgcagtaaa caaggctggt tggagaatga
     1441 aaacaacaac cgctaatggt caaacaggtc aagctgacaa gtttgaaacc gttacatcag
     1501 gcacaaaagt aacctttgct agtggtaatg gtacaactgc gactgtaagt aaagatgatc
     1561 aaggcaacat cactgttaag tatgatgtaa atgtcggcga tgccctaaac gtcaatcagc
     1621 tgcaaaacag cggttggaat ttggattcca aagcggttgc aggttcttcg ggcaaagtca
     1681 tcagcggcaa tgtttcgccg agcaagggaa agatggatga aaccgtcaac attaatgccg
     1741 gcaacaacat cgagattacc cgcaacggca aaaatatcga catcgccact tcgatgaccc
     1801 cgcaattttc cagcgtttcg ctcggcgcgg gggcggatgc gcccacttta agcgtggatg
     1861 acgagggcgc gttgaatgtc ggcagcaagg atgccaacaa acccgtccgc attaccaatg
     1921 tcgccccggg cgttaaagag ggggatgtta caaacgtcgc acaacttaaa ggtgtggcgc
     1981 aaaacttgaa caaccgcatc gacaatgtgg acggcaacgc gcgcgcgggt atcgcccaag
     2041 cgattgcaac cgcaggtttg gctcaggcct atttgcccgg caagagtatg atggcgatcg
     2101 gcggcggtac ttatcgcggc gaagccggtt acgccatcgg ctactcgagc atttctgaca
     2161 ctgggaattg ggttatcaag ggcacggctt ccggcaattc gcgcggtcat ttcggtactt
     2221 ccgcatctgt cggttatcag tggtaagggc tttttcgcct gtctgctgtt ggggcaggcg
     2281 gaaggtttga agggaagggt ggcgatttgc cgc
//
LOCUS       DAXHNP010000214         2309 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.214, whole genome shotgun sequence.
ACCESSION   DAXHNP010000214 DAXHNP010000000
VERSION     DAXHNP010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.214"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..567)
                     /locus_tag="ACFM5C_002022"
     CDS             complement(<1..567)
                     /locus_tag="ACFM5C_002022"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010931119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HFC6069657.1"
                     /translation="MEHKLPQLPYEPDALSPHLSKETLEFHYGKHHQTYITNLNNQIK
                     GTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTPKGQGKPSGELAAAIDAKWG
                     SFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
                     HAYYIDYRNSRPNYLKGFWEIVNWDEVAK"
     gene            731..2137
                     /gene="dnaB"
                     /locus_tag="ACFM5C_002023"
     CDS             731..2137
                     /gene="dnaB"
                     /locus_tag="ACFM5C_002023"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFC6069658.1"
                     /translation="MNDYAAMPSEDREVGALSLPPHSMEAEQSVLGGLMLENPAWDRI
                     ADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITL
                     AQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQ
                     IAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPG
                     DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQS
                     VLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLI
                     VIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPM
                     MSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQ
                     FTKFDNAAYIPEEAKIED"
BASE COUNT          555 a          587 c          629 g          538 t
ORIGIN      
        1 tttggcgact tcgtcccagt tgacgatttc ccagaaacct ttcaggtagt tggggcggct
       61 gttgcggtag tcgatgtagt aggcgtgttc ccacacgtcg caggtcagca gcggcgtgtt
      121 ttcagtggtc agcggcgtag cggcgttgga agtggaaacc aaatccaatc cgccggcagg
      181 ggttttcacc agccatgccc aaccggagcc gaaagtaccg gccgcgcagg cattgaacgc
      241 ttcttggaat ttctcgaagc tgccccattt cgcgtcgatg gcggcggcca gttcgccgga
      301 aggtttgcct tgacctttgg gcgtgaaacc cagccagtag aaggtgtggt tccaagtttg
      361 tgccgcgttg ttgaacacgc cgcccgaaga ttttttcaca atctcttcca aaggcaggtt
      421 ttcaaattcg gtgcctttga tttgattgtt caggttggtg atgtaggttt gatggtgttt
      481 gccgtagtgg aattccaaag tctctttgct cagatgcggg gacaatgcgt ccggttcata
      541 aggcagttgc ggcagcttat gttccatttt gtgctcctaa tgttgttttt ggatgttgtg
      601 ttttggcagt gttgctgcaa acgaatcggc agcacacgca ttctacctgt tttgagggat
      661 ggaaaccaat tgaacctgct ttacgctata atagaagatt gcaatttcgg cacgacagat
      721 aggatgtacc atgaacgatt acgccgctat gccgtctgaa gaccgtgagg tcggcgcatt
      781 gtcgctgcct ccacattcga tggaggcgga acaatccgtt ttgggcggtt tgatgctgga
      841 aaatccggct tgggacagga ttgccgatgt ggtttccggt gaagacttct accgccacga
      901 acaccgcctg attttccgat ccattgctaa attaatcaat gagagccgtc ccgccgatgt
      961 gattacggtt caggaagatt tgcagcggaa cgaagaattg gaagcggcag gcggattcga
     1021 atatctgatt acgctggcgc aaaacacccc gtctgccgcc aacatccgcc gctacgccga
     1081 aatcgtgcgc gagcgttcca ttatgcgcca actcgccgaa gtggggacgg aaatcgcccg
     1141 cagcgcctac aatccgcaag gcagggacgc ggggcagctt ttggacgagg cggaaaacaa
     1201 agtattccaa atcgccgaaa gcacggccaa atccaagcag ggctttttgg agatgcccga
     1261 tttgctgaaa gaagtcgtac agcgcatcga tatgctctac tcgcgcgaca atcccgatga
     1321 agttaccggc gtgccgacag ggtttatcga cctcgacaaa aaaacctcgg gtctgcagcc
     1381 cggcgacctg attatcgttg ccggccgtcc gtctatgggt aagaccgcct tttcgatcaa
     1441 tattgcggaa cacgttgccg tagaaggcaa gctgcccgtt gccgtctttt cgatggagat
     1501 gggcggtgcg caactggtca tgcgtatgct cggctcggtc ggacggttgg atcaaagcgt
     1561 cctgaaaaca ggcaggttgg aagacgaaca ttggggtcgt ctgaatgaag cagtcgtcaa
     1621 actctcagac gcgcccgtgt acatcgacga gaccccgggt ctgactgcgc tcgaactgcg
     1681 cgcccgcgcc cgtcgtctcg cccgtcaatt taacaataag ctgggattaa tcgtcatcga
     1741 ctacctgcaa ctgatggcgg gatccggccg ttccgacaac cgagcttcag agctgggcga
     1801 aatttcacgt tcgctcaaag cgttggcgaa agaattgcaa gtccccatca tcgccctgtc
     1861 gcaattgagc cgcacggtcg aatcgcgtac cgacaaacgc ccgatgatgt ccgaccttcg
     1921 cgaatccggt gctatcgagc aggatgccga cctgattatg tttatgtacc gcgacgaata
     1981 ctacaaccaa gactcgccca tgaaaggcct tgccgaatgt atcatcggca aacaccgcaa
     2041 cggtcccgtc ggtaaaatct tcctcacatg gacgggacaa ttcaccaaat tcgacaatgc
     2101 tgcctatatt cccgaggagg caaagataga ggattaaatg gctatataaa aatttattag
     2161 gcgaaatcag gcaaaatcgt ttaaaatcat gcttagagat tgccctaaaa aataaaacgc
     2221 ggtcttgagg catttttgca ttcagcccgc atataattga aaatatagtg gattaacaaa
     2281 aatcaggaca aggcaacgaa gccgcagac
//
LOCUS       DAXHNP010000215         2287 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.215, whole genome shotgun sequence.
ACCESSION   DAXHNP010000215 DAXHNP010000000
VERSION     DAXHNP010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.215"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            20..748
                     /gene="rpe"
                     /locus_tag="ACFM5C_002024"
     CDS             20..748
                     /gene="rpe"
                     /locus_tag="ACFM5C_002024"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFC6069659.1"
                     /translation="MTTYRIAPSILSADFARLGEEVESVIAAGADLIHFDVMDNHYVP
                     NLTFGPMVCAALKPYASVPIDVHLMVEPVDDLIQSFAKAGASIITFHPEASRHIDRSL
                     SLIRDMGCQAGLVLNPATPVYLLENVLDRLDMVLLMSVNPGFGGQSFIPHTLEKIRRV
                     RAMLDRYEAQSGRHIAIEVDGGIKTDNIAAVARAGADTFVAGSAIFGKPDYKAVIDAM
                     RAELEKSGRLNLAPMIEIEMPSEN"
     gene            complement(771..1802)
                     /gene="ruvB"
                     /locus_tag="ACFM5C_002025"
     CDS             complement(771..1802)
                     /gene="ruvB"
                     /locus_tag="ACFM5C_002025"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFC6069660.1"
                     /translation="MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQH
                     KAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKELGVNLRQTSGPVLER
                     AGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
                     LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIVSRSAQLLQLDMSEEGA
                     EEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDVQGLDVMDRK
                     FLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATERAY
                     LHFGLPVEK"
     gene            complement(1884..2192)
                     /locus_tag="ACFM5C_002026"
     CDS             complement(1884..2192)
                     /locus_tag="ACFM5C_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069661.1"
                     /translation="MTLKTDLLPKINNEDYQRLILKHSAEFSGGEIRLLNEILEKFNF
                     DVVQAQALAQAVMQQVRFDPNAYHIDSDDEDTTGICPHCINPPMPPLRDYLVWRETRG
                     "
BASE COUNT          463 a          549 c          733 g          542 t
ORIGIN      
        1 gatattgaag gaaaaaaaca tgactactta ccgtatcgca cccagcattt tatcggcaga
       61 ttttgcacgg cttggcgaag aggtggaaag cgtcattgcg gcaggtgcag atctgatcca
      121 ttttgacgtg atggacaacc attatgtgcc gaacctgacc ttcggcccta tggtttgcgc
      181 ggcgttgaag ccttatgcaa gcgtgccgat cgatgtgcat ctgatggtcg aacccgttga
      241 cgacctgatt cagtcgtttg ccaaagcagg agcatcaatc atcacgttcc atcccgaagc
      301 gagccgccat atcgaccgca gcttgagcct gattcgggac atgggctgtc aggcggggct
      361 ggtgttgaat ccggcaacgc ccgtatatct gttggaaaac gtattggaca ggctggatat
      421 ggttttgctg atgtcggtca accccggatt cggcggacaa agcttcatcc cgcacaccct
      481 tgaaaaaatc cgccgggtgc gggcgatgct ggatcggtac gaagcacaaa gcgggcggca
      541 catcgccatc gaagtggacg gcggcatcaa aaccgacaat attgccgccg ttgcccgagc
      601 tggtgcggat acctttgttg ccggttctgc gattttcggc aaaccagact ataaggcggt
      661 gattgatgcg atgagggcgg aactggaaaa aagcggcagg ctgaaccttg cgccaatgat
      721 tgaaatagaa atgccgtctg aaaattagct ctgtttcaga cggcattgcg ttatttttcg
      781 acgggcagcc cgaaatgcag gtaggcgcgt tcggtcgcca tcctgccgcg cggggtgcgt
      841 tgcaggaagc cttgttggat aaggtagggt tcgataacgt cttcgatggt gtctgttgat
      901 tcgccgatgg cggcggcaac attgtccaaa ccgaccgggc cgccgccgaa tttgtgcaaa
      961 acggcttcga ggaatttcct gtccatcacg tccagcccct gcacgtccac gtccagcata
     1021 cttaaagcgg catcggcgat gccgccgtcg attgtgccgt tgtttttcac gtcggcgaaa
     1081 tcgcgcacgc ggcgcaacag gcggttggcg atgcgcggcg taccgcggct gcgtttggcg
     1141 atttcttccg cgccttcttc ggacatatcg agttgcagga gttgtgccga acggctgacg
     1201 atggtggcaa ggtcgcggtt ttcgtaaaac tcgaggcggg agacgatgcc gaagcggtcg
     1261 cgcaacggat tggtcagcat accggcgcgg gtggtcgcgc cgacaagcgt gaagggcggc
     1321 aggtcgattt taacggaacg ggcggcgggc ccttcgccta tcataatgtc gagccggtag
     1381 tcttcaagcg cggggtagag gatttcttcg acaacagggc tgaggcggtg gatttcgtcg
     1441 ataaacaata cgtcgtgcgg atcaaggttg gtcaaaaggg cggcgagatc gccggcgcgt
     1501 tcgaggacgg ggccgctggt ttggcgcaaa tttacgccca attctttggc gatgatgtgc
     1561 gccagtgtgg ttttacccag tccgggcggg ccgaagagca aaacgtggtc gagtgcttcg
     1621 ccgcgttttt tggcggcttg gatgaaaatg gcgagctgtt ctttggcttt atgctgcccg
     1681 atatagtcgt ccagcgtttt ggggcggagg gcgcgttcga gcagttcttc ctgtgcggag
     1741 gcggtttggg cggcaacaat gcgttgcggt tgagcggcag tcaggttgtc ggtttgcagc
     1801 atagtgttcc ctttgtcggg tatgccgtct gaacggtcgg cggcgtttca gacggcattg
     1861 aaaagataac ggtcaaaagc gttttacccg cgcgtttcgc gccaaacgag atagtcgcgc
     1921 aggggcggca taggcgggtt gatgcagtgt gggcagatgc ctgtggtgtc ttcgtcgtcg
     1981 ctgtcgatgt gataggcgtt ggggtcgaag cggacttgct gcatcaccgc ctgcgccaac
     2041 gcctgcgcct gaacaacgtc gaaattgaat ttttcgagga tttcgttcaa taggcggatt
     2101 tcgccaccgc taaattccgc actgtgtttg aggatgaggc gttgataatc ttcgttgttg
     2161 attttaggca ataaatcggt tttcagggtc atgattttat gtcgggggcg gaatggctga
     2221 agcgtgaatt atagcggata tggcggcggc tgttgcaaag cttggattgg gtatcgtcct
     2281 caaaact
//
LOCUS       DAXHNP010000216         2286 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.216, whole genome shotgun sequence.
ACCESSION   DAXHNP010000216 DAXHNP010000000
VERSION     DAXHNP010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.216"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            296..808
                     /locus_tag="ACFM5C_002027"
     CDS             296..808
                     /locus_tag="ACFM5C_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFC6069662.1"
                     /translation="MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAAAA
                     GVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVV
                     YLHAPPETLLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRET
                     VQTLLKRLSR"
     gene            888..1967
                     /gene="aroB"
                     /locus_tag="ACFM5C_002028"
     CDS             888..1967
                     /gene="aroB"
                     /locus_tag="ACFM5C_002028"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFC6069663.1"
                     /translation="MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANET
                     VAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIAL
                     GGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQP
                     QAVLADLDTLHTLPVRELSAGMAEVIKYGALGDIGFFEWLEQNISGLMTLDREKLAQA
                     VYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAA
                     RLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGL
                     NRLGEANITEITDTDILRRTLQPYL"
BASE COUNT          563 a          709 c          549 g          465 t
ORIGIN      
        1 attgataaac atattatctt caatatattc aattggataa ttgtttacct aagcaaagat
       61 aattgccttt tcctgacaaa taagtgaaat caacggattg tcaaaacaca gcctgaaata
      121 aaaaacctcc ctgatttctt ttatttgtcc ttaaaatcag aaaggttcgg gatggtcggg
      181 ttatttttcc aaacgtaccg ccgccctgcc gatttcgtat aaaattccgc cgtaacccga
      241 caagcccgaa ccctgtcgcc ccgaaaggcg gggtgtcaaa cattaaggaa ttgtgatgaa
      301 aaactttaac ggcaaactca tcctcatcgg actgatgggc gcgggcaaaa ccacgctggg
      361 ccggcaaatg gcgcagcggc tggattaccg tttttacgac agcgatcacg aaatcgccgc
      421 agccgccggc gttcccatcc ccaccatatt tgaaatggaa ggcgaacagg gattccgttc
      481 gcgcgaaacc gccatactca aaaagctggt tatcctgccc catatcgtcc tgtccaccgg
      541 cggcggcgcg gtgttaaaag aagaaaaccg cgcccttatc cgcaaaagcg gcacggtcgt
      601 ctatctgcac gccccgcccg aaaccctgct cgaacgcacg cgctgcgaca acagccgtcc
      661 tttgctgcaa gttgccgatc ctttggcgaa attacgtgaa ctctacgccg cacgcgaccc
      721 cgtttaccgc caaaccgccg actttaccgt agaatcggca aactgccggg aaaccgtgca
      781 aaccctgctc aaacgcttat cccgataaac cggcatatgc gccgcgccca gaaaaccaag
      841 ccgcgccccg cccggcgggt cggcggttca aactttaagg aacaacaatg aaaacactga
      901 ccgtacacac cccgtcccac agctacccca tctttatcgg caacggactg ctgccgcagg
      961 caggaagcct gctcaaaccg catttgggca aacgcgccgc catcatcgcc aacgaaaccg
     1021 tcgccccgct ctacctcggc acgcttcaga cggcattgga tgcggcaggc gtatcccatt
     1081 tcagcatcat cctgcccgac ggcgaggcgc acaaaaactg gcagacgctc aacctcatct
     1141 ttgacgggct gatgcaaaac cgcgccgaac gcaaaaccac attaatcgca ctgggcggcg
     1201 gcgtgatcgg cgacatggtc ggctttgccg ctgccaccta ccagcgcggc gcaccgttcg
     1261 ttcaaatacc gaccacactg ttgagtcaag tcgactcatc ggtgggcggc aaaaccgcca
     1321 tcaaccaccc gctcggcaaa aatatgatcg gcgcattcta ccagccgcag gcggtgcttg
     1381 ccgacttgga cacgctgcac accctgcccg tccgcgaatt gtccgccggt atggcggaag
     1441 tcatcaaata cggcgcgctc ggcgacatcg gttttttcga atggctcgaa caaaacatat
     1501 ccggactgat gacgctcgat cgggaaaaac tcgcccaagc cgtgtaccgc tgctgccaaa
     1561 tgaaggcaga catcgtcgcc caagacgaaa ccgaacaggg catacgcgca tggctcaacc
     1621 tcggacacac cttcggacac gccattgaaa ccgagatggg ttacggcact tggctgcatg
     1681 gagaagccat cgccgccggc tgcgtgttgg cggcgcgttt gtccgaacaa ctgggcaaaa
     1741 cctccgccgc agataccgcg cggctcgccg ccctgctcga agccgctgga ctgccgtccg
     1801 caccgcccgt gtttgccttt gaaaaatggc tcgaacatat gagccacgat aaaaaagtca
     1861 gcggcggcat catgcgcttt atcggtctga accggctggg cgaagccaac atcaccgaaa
     1921 ttaccgacac ggacatcctc cgccgcaccc tgcaaccgta tctctgattt cctctgccga
     1981 tgtgctgccg cgcgggtttg acgcacgatg atgattttcc atcatctttc tccgtaaaag
     2041 cgggaatccg gtccgttcgg tttcggtcgt ttccgataag ttcccgttgc ttttcatttc
     2101 tagattccca ctttcgcagg aatgacggtg gaaaggtttt tgttgtttcg gagaagtttc
     2161 tgcaacccta gaatctcgtt atttccacaa aaaacagaaa cccaaaacag caacttaaaa
     2221 cctcgtcatt cccgcaaaag cgggaatccg gtccgttcgg tttcggtcgt ttccgataaa
     2281 ttcccg
//
LOCUS       DAXHNP010000217         2243 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.217, whole genome shotgun sequence.
ACCESSION   DAXHNP010000217 DAXHNP010000000
VERSION     DAXHNP010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.217"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            118..1185
                     /gene="rfbB"
                     /locus_tag="ACFM5C_002029"
     CDS             118..1185
                     /gene="rfbB"
                     /locus_tag="ACFM5C_002029"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HFC6069664.1"
                     /translation="MRKILVTGGAGFIGSAVVRHIIQNTQDSVVNLDKLTYAGNLESL
                     TDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNI
                     VGTFNLLEAARAYWQQMPSEQREAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYG
                     DGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICTLLEELVPE
                     KPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN
                     KTWWQNVLNGSYRLERLGTGK"
     gene            1248..2114
                     /gene="rfbA"
                     /locus_tag="ACFM5C_002030"
     CDS             1248..2114
                     /gene="rfbA"
                     /locus_tag="ACFM5C_002030"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HFC6069665.1"
                     /translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
                     CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFDANFRALSVEEK
                     PQQPKSNWAVTGLYFYDNRAVEFAKRLKPSARGELEISDLNQMYLEDGSLSVQILGRG
                     FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKN
                     QYGQYLLRLLKK"
     gene            2153..>2243
                     /locus_tag="ACFM5C_002031"
     CDS             2153..>2243
                     /locus_tag="ACFM5C_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6069666.1"
                     /translation="MKDKKMNIIDTAIPDVKLLEPQVFGDARGF"
BASE COUNT          558 a          624 c          542 g          519 t
ORIGIN      
        1 aagttgacct gatacaggcc gtctgaaaga gatgttttca gacggcctct ttatctgaaa
       61 aacacacatt ctgtctgcta taatctgttt atattttttg gctatcctct gaaatttatg
      121 agaaaaatcc tcgttaccgg cggtgcgggc tttatcggtt ctgccgttgt ccgtcatatc
      181 attcaaaaca cccaagattc cgtcgtcaac ctcgacaaac tgacctacgc gggcaatctc
      241 gaatcgctga ccgacattgc cgataatccc cgctatgctt tcgagcaagt ggacatttgc
      301 gaccgcgccg aactcgaccg cgtattcgca caacaccggc ccgatgccgt gatgcacttg
      361 gcggcggaaa gccatgtcga ccgctctatc ggttcggcag gcgagtttat ccaaaccaat
      421 atcgtcggca cattcaatct gcttgaagca gcccgcgcct actggcaaca aatgccgtct
      481 gaacagcgcg aagctttccg tttccaccat atttccaccg atgaagtcta tggcgattta
      541 ggcggcacgg acgatttgtt taccgaaacc gcgccctacg cgccgtccag cccctactct
      601 gcctctaaag cgtccagcga ccacctcgtc cgcgcgtggt tgcgtactta cggcttgccg
      661 accattgtaa ccaactgctc caacaactac ggtccttacc attttccgga aaaactcatt
      721 cctttgatga ttctgaacgc gcttgacggc aaaccgctgc ctgtgtacgg cgacggtatg
      781 caaatccgcg actggctgtt tgtcgaagac cacgcgcgcg cactgtatca ggttgttacc
      841 gaaggtgttg tcggcgaaac ctacaatatc ggcggccaca atgaaaaagc caatattgaa
      901 gtcgtcaaaa ccatctgcac cctgctggaa gagcttgttc ctgaaaaacc ggccggtgtg
      961 gcgcgttatg aagatttgat tactttcgta caagaccgcc ccggccatga cgtacgctac
     1021 gccgtcgacg cagccaaaat caggcgggat ttgggctggc tgcctttgga aaccttcgag
     1081 tccggcctcc gcaaaaccgt gcaatggtat ctggacaaca aaacctggtg gcaaaatgta
     1141 ttgaacggca gctatcgttt ggaacgttta ggtactggaa aatagttttc agacggcatc
     1201 ccgacgcaat gccgtctgaa aacccatcgc aaaggaagaa agaaaagatg aaaggcatca
     1261 tactggcagg cggcagcggc acgcgcctct accccatcac gcgcggcgta tccaaacagc
     1321 tcctgcccgt gtacgacaaa ccgatgattt attacccctt gtcggttttg atgctggcgg
     1381 gaatccgcga tattttggtg attaccgcgc ctgaagacaa cgcctctttc aaacgcctgc
     1441 ttggcgacgg cagcgatttc ggcatttcca tcagttatgc cgtgcaaccc agtccggacg
     1501 gcttggcaca ggcatttatc atcggcgaag aatttatcgg caacgacaat gtttgcttgg
     1561 ttttgggcga caatattttt tacggtcagt cgtttacgca aacattgaaa caggcggcag
     1621 cgcaaacgca cggcgcgacc gtgtttgctt atcaggtcaa aaatcccgaa cgtttcggcg
     1681 tggttgaatt tgacgcaaac ttccgcgccc tgtctgtcga agagaaaccg caacagccca
     1741 aatccaattg ggcggtaacc ggcttgtact tctacgacaa ccgtgccgtc gagttcgcca
     1801 aacggctcaa accgtccgca cgcggcgaat tggaaatttc cgacctcaac caaatgtatt
     1861 tggaagacgg ttcattgtcc gtccaaatat taggacgcgg tttcgcatgg ttggacaccg
     1921 gcacccacga gagcctgcac gaagccgctt cattcgtcca aaccgtgcaa aacatccaaa
     1981 acctgcacat cgcctgcctg gaagaaatcg cttggcgcaa cggttggctt tccgatgaaa
     2041 aactggaaga attggcgcgc ccgatggcga aaaaccaata cggccaatat ttgctgcgcc
     2101 tgttgaaaaa ataatgtttg aggccgtctg aaacttttca gacggccttt agatgaaaga
     2161 taaaaagatg aacatcattg ataccgccat tcctgacgta aaactgcttg agccccaagt
     2221 cttcggcgac gcgcgcggct ttt
//
LOCUS       DAXHNP010000218         2193 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.218, whole genome shotgun sequence.
ACCESSION   DAXHNP010000218 DAXHNP010000000
VERSION     DAXHNP010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.218"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            30..515
                     /locus_tag="ACFM5C_002032"
     CDS             30..515
                     /locus_tag="ACFM5C_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069667.1"
                     /translation="MFVNEKDPYAALFAGLVFLTLPFALAVHDALAFVFGRTGLLVSV
                     SDGGFGWRGGWDGVVWFVYGVFAFLNLVVSAGLTKLAYKKMMRRHSRYALFLSGVAAC
                     AAAAVAWIFELLLGSGALGGLRGEAVLEYAFAVWLVAMLTLPKRLTRAPVQPVVFHRK
                     K"
     gene            611..1234
                     /gene="rsmG"
                     /locus_tag="ACFM5C_002033"
     CDS             611..1234
                     /gene="rsmG"
                     /locus_tag="ACFM5C_002033"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFC6069668.1"
                     /translation="MERKERLRAGIAALGLDISAAAQDRLLAYVDLLKKWNKTYNLTA
                     LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
                     KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDG
                     GYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLEAERHIVILSKR"
     gene            1333..2106
                     /locus_tag="ACFM5C_002034"
     CDS             1333..2106
                     /locus_tag="ACFM5C_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HFC6069669.1"
                     /translation="MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
                     NATTGSGIDKAGLQSGVYQVLLGDADVKSAAVRSKEGGYAVLGANRALAGAEIELVQE
                     IAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
                     DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETAIPRNI
                     RLAEAPSHGMPVMAYDAQAKGAKAYLALADELAARVSGK"
BASE COUNT          423 a          503 c          760 g          507 t
ORIGIN      
        1 tcggtctgct tcggaagagg gggacggcga tgtttgtgaa cgagaaagat ccttatgcgg
       61 ctctgtttgc gggactggtg tttttgacgc tgccgtttgc gttggcggtg catgatgcct
      121 tggcatttgt gttcggacgg acggggctgc tggtgtcggt gtcggacggc ggattcggct
      181 ggcgaggagg ctgggacggc gtggtgtggt ttgtgtatgg cgtgtttgcg tttttgaacc
      241 tagtcgtgtc ggcgggcctg acgaaactgg cgtacaaaaa gatgatgcgg cggcattccc
      301 gttacgcgct gtttctgtcg ggcgtggcgg cttgcgcggc tgctgcggtc gcgtggattt
      361 tcgagctgct gcttggcagt ggggctttgg gcgggctgcg tggggaggcg gtgttggaat
      421 atgcgtttgc cgtgtggctg gtggcgatgc tgacgctgcc caaacgcctg acgcgcgcgc
      481 cggtgcagcc ggtggtgttt cacaggaaaa aataggttgg aacgggaaat gccgtctgaa
      541 ccccgacacg cggtttcaga cggcatgttt ttccgttaac attacgcctg aacatggaca
      601 ggatagggat atggaacgca aagaacgcct gcgtgcaggc atcgccgcat tgggtttgga
      661 tatttccgca gcggcgcagg acaggctttt ggcctatgtg gatttgttga aaaagtggaa
      721 caaaacctac aatctgaccg ccctgcgcga cgaggaaaaa atgattgtcc atcatctttt
      781 ggacagcctg acgctgctgc cccatatcga gggtgtgcaa acgatgctgg atgtcggttc
      841 gggcggcggt cagcccggca ttccggcggc ggtgtgccgt ccggatgtgc agataaccct
      901 tttggatgcg aatacgaaga aaacggcttt tttacagcag gcggttatcg agttgggatt
      961 ggacaatgtg cgcgtggtat ccggacgcgt ggaggcggtt tcggacgtgc gtgccgatgt
     1021 ggttaccagc cgtgcgtttg cagaactggc ggattttgtg tcgtggacgg tgcatctgtt
     1081 gaaagacggc ggctactggg cggcgatgaa gggcgtgtat ccgcaggaag aaatcggccg
     1141 cctgccgcag gatgtgtgcg ttgaaaaagt ccaaaggctc gacgtgccgg gcttggaggc
     1201 ggaacgccat atcgttatcc tgagcaagcg ttgagcgcgc ttcagacggc atgaatacct
     1261 tttttgtgcg gataaaggta aaattccgca ctgtttttct tttttcaaca tcagacggga
     1321 cacgggcggg acatgagtgc gaacatcctt gccatcgcca atcagaaggg cggtgtgggc
     1381 aaaacgacga cgacggtaaa tttggcggct tcgctggcat cgcgcggcaa acgcgtgctg
     1441 gtggtcgatt tggatccgca gggcaatgcg acgacaggca gcggcatcga caaggcgggt
     1501 ttgcagtccg gcgtttatca ggtcttattg ggcgatgcgg acgtgaaatc ggcggcggta
     1561 cgcagcaaag agggcggata cgctgtgttg ggtgcgaacc gcgcgctggc cggcgcggaa
     1621 atcgagctgg tgcaggaaat cgcccgggaa gtgcgtttga aaaacgcgct caaggcagtg
     1681 gcggaagatt acgactttat cctgatcgac tgtccgcctt cgctgacgct gttgacgctt
     1741 aacggcttgg tggcggcggg cggcgtgatt gtgccgatgt tgtgcgaata ttacgcgctg
     1801 gaagggattt ccgatttgat tgcgaccgtg cgcaaaatcc gtcaggcggt caatcccgat
     1861 ttggacatca cgggcatcgt gcgcacgatg tacgacagcc gcagcaggct ggttgccgaa
     1921 gtcagcgaac agttgcgcag ccatttcggg gatttgcttt ttgaaaccgc catcccgcgc
     1981 aatatccgcc ttgcagaagc gccgagccac ggtatgccgg ttatggctta tgatgcgcag
     2041 gcaaagggtg ccaaggcgta tcttgccttg gcggacgagc tggcggcgag ggtgtcgggg
     2101 aaataggtca atccaaatcg ggctgcccgt gcctttatgc tgtttggccg ggtgcgttaa
     2161 tatggcggat taaaataaaa atacttatat cgt
//
LOCUS       DAXHNP010000219         2168 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.219, whole genome shotgun sequence.
ACCESSION   DAXHNP010000219 DAXHNP010000000
VERSION     DAXHNP010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.219"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            99..1910
                     /gene="typA"
                     /locus_tag="ACFM5C_002035"
     CDS             99..1910
                     /gene="typA"
                     /locus_tag="ACFM5C_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFC6069670.1"
                     /translation="MKQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRANQQVDERVMDS
                     NDLEKERGITILAKNTAIDYEGYHINIVDTPGHADFGGEVERVLGMVDCVVLLVDAQE
                     GPMPQTRFVTKKALALGLKPIVVINKIDKPSARPSWVIDQTFELFDNLGATDEQLDFP
                     IVYASGLSGFAKLEETDESNDMRPLFDTILKYTPAPSGSADETLQLQISQLDYDNYTG
                     RLGIGRILNGRIKPGQTVAVMNHDQQIAQGRINQLLGFKGLERVPLEEAEAGDIVIIS
                     GIEDIGIGVTITDKDNPKGLPMLSVDEPTLTMDFMVNTSPLAGTEGKFVTSRQIRDRL
                     QKELLTNVALRVEDTADADVFRVSGRGELHLTILLENMRREGYELAVGKPRVVYRDID
                     GQKCEPYENLTVDVPDDNQGAVMEELGRRRGELTNMESDGNGRTRLEYHIPARGLIGF
                     QGEFMTLTRGVGLMSHVFDDYAPVKPDMPGRHNGVLVSQEQGEAVAYALWNLEDRGRM
                     FVSPNDKIYEGMIIGIHSRDNDLVVNPLKGKKLTNIRASGTDEAVRLTTPIKLTLEGA
                     VEFIDDDELVEITPQSIRLRKRYLSELERRRHFKKLD"
     gene            complement(1922..>2168)
                     /locus_tag="ACFM5C_002036"
     CDS             complement(1922..>2168)
                     /locus_tag="ACFM5C_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069671.1"
                     /translation="LPKLVRTQKAYSFKRHCSTCCREAEPDTETRRGDMPLEKWRQFL
                     DWVGKTPSETASRSRKARPNKKCRLKFFRRHRVSFKH"
BASE COUNT          545 a          619 c          568 g          436 t
ORIGIN      
        1 gcaagggctt cagacggcat cttcatttcc caaatactgt ccggtaaagc gtggtataat
       61 gcgcagttat ctcttacagt ttttgaaaaa cattaattat gaaacaaatc cgcaacatcg
      121 ccatcatcgc ccacgtcgac cacggcaaaa ccacattggt cgaccaactg ctgcgccaat
      181 ccggcacatt ccgagccaac cagcaggttg acgagcgcgt gatggacagc aacgacctcg
      241 aaaaagaacg cggcatcacc atcctcgcca aaaacaccgc catcgattac gaaggctacc
      301 acatcaatat cgtcgatacg ccgggacacg ccgacttcgg cggcgaagta gagcgcgttt
      361 tggggatggt ggactgcgtc gtcttgttgg tggacgcgca ggaaggcccg atgccgcaaa
      421 cccgtttcgt gaccaaaaaa gccttggctt tggggctgaa accgattgtc gtcatcaaca
      481 aaatcgacaa gccgtccgct cgtccgagct gggtcatcga ccaaactttc gagctgttcg
      541 acaacttggg cgcgaccgac gagcagttgg atttcccgat tgtttacgct tcagggttga
      601 gcggtttcgc caaattggaa gaaaccgacg agagcaacga catgcgtccg ctgttcgata
      661 ctatcttaaa atatacgcct gcaccgagcg gcagcgcgga cgaaacgctg caactgcaaa
      721 tttcccaact cgactacgac aactacaccg gccgcctcgg tatcggtcgt atcttgaacg
      781 gacgcatcaa acccggccaa accgttgccg tcatgaacca cgatcagcaa atcgcccaag
      841 gccgcatcaa ccagcttttg ggtttcaaag gtttggaacg cgtgccgctt gaagaagccg
      901 aagccggcga catcgtgatt atttccggta tcgaagacat cggcatcggc gtaaccatca
      961 ctgataaaga taaccccaaa ggcctgccga tgttgagcgt ggacgaaccg acgctgacca
     1021 tggactttat ggttaacacc agcccgttgg cgggcacgga aggcaaattc gtaaccagcc
     1081 gccaaatccg cgaccgcctg caaaaagaat tgctgaccaa cgtcgccctg cgcgtggaag
     1141 ataccgccga tgccgacgtg ttccgcgtat ccgggcgcgg cgagctgcac ctgaccattt
     1201 tgctggaaaa catgcgccgc gaaggctacg aactcgccgt cggcaaaccg cgcgtcgtgt
     1261 accgcgacat cgacggtcaa aaatgcgaac cgtatgaaaa cctgaccgtg gacgtacccg
     1321 acgacaacca aggcgcggta atggaagaac tcggccgccg ccgtggcgaa ctgactaata
     1381 tggaaagcga cggcaacgga cgcacccgcc tcgaatacca tattccagcg cgcggcttga
     1441 tcggcttcca aggcgaattt atgaccctga cgcgcggggt cgggctgatg agccacgtgt
     1501 tcgacgatta cgcgcccgtc aaacccgata tgcctggccg ccacaacggc gtgctggtgt
     1561 cccaagagca gggcgaggca gtcgcttacg ccttgtggaa tctggaagac cgcggccgta
     1621 tgttcgtatc gcccaacgac aaaatctacg aaggtatgat tatcggcatc cacagtcgcg
     1681 acaacgattt ggtggtcaac ccgctcaaag gcaaaaaact taccaacatc cgtgccagcg
     1741 gtaccgacga agccgttcgc ctgaccacgc cgattaagct gacgctggaa ggtgcggtcg
     1801 agtttatcga cgatgatgag ctggtagaaa tcacgccgca atccatccgt ctgcgcaagc
     1861 gttacttgag cgaattggaa cgccgccgcc atttcaaaaa gctagattga tgtttactgg
     1921 attaatgttt aaatgatacg cgatgccgtc tgaaaaattt cagacggcat tttttattcg
     1981 gacgggcttt gcggcttctt gaagctgttt cagacggcgt ttttcctacc caatcaagaa
     2041 actgccgcca tttttccagc ggcatatcgc cccgtcgcgt ttcggtatcg ggttcggctt
     2101 cccggcagca tgtcgaacaa tgccgtttga aggaatacgc cttttgagtc cttacaagct
     2161 taggaaga
//
LOCUS       DAXHNP010000220         2158 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.220, whole genome shotgun sequence.
ACCESSION   DAXHNP010000220 DAXHNP010000000
VERSION     DAXHNP010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.220"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(159..674)
                     /locus_tag="ACFM5C_002037"
     CDS             complement(159..674)
                     /locus_tag="ACFM5C_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069672.1"
                     /translation="MSAFRKILLIISCLLIASCSFVETIFYMAISPEPVVVDFPLGKK
                     TKRSIELKQKIGKPYAISLGTNFIHYDPKQGERWIDDKLNYPYNISVKIFKVEEDGKK
                     LIIDELLTERSRKLGGGVFGAGGKYSMYIYDFYLPEGEYLFEISDNSEYIPLYDEINN
                     SIRIVVNARIQ"
     gene            complement(935..1205)
                     /locus_tag="ACFM5C_002038"
                     /pseudo
     CDS             complement(935..1205)
                     /locus_tag="ACFM5C_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248307.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated protein frpA"
BASE COUNT          740 a          372 c          278 g          768 t
ORIGIN      
        1 acagccccga tttttttatc tctagccgaa tacagttcaa cccaaacgta cccgtcttgg
       61 atacaccccc tcttgtttca gtggcgtacc ctgcttcgca aattttacag ttatcgcata
      121 ataatcagcc ataagtaacc ccacatttct agaaaaattt actgaattcg tgcattaact
      181 actattctta tagaattatt tatttcatcg taaagtggaa tatattcact attatcagaa
      241 atctcaaata aatattcccc ttccggcaaa taaaaatcat aaatatacat actgtatttt
      301 cccccagctc caaatactcc gcctcctaat tttctacttc tctctgtaag caactcatct
      361 ataataagtt ttttaccatc ttcttccact ttaaatattt taaccgatat attatatgga
      421 tagtttaact tatcatcaat ccacctctcc ccctgttttg gatcataatg tataaaatta
      481 gttcctaacg atattgcata aggtttacca attttctgtt tgagttcaat agatcttttt
      541 gtttttttac caagaggaaa gtctaccaca acaggttctg ggctaatagc catataaaaa
      601 atagtttcaa caaaactgca gctagcaatc aataggcaag atattattaa taatattttt
      661 ctaaatgcag acataataaa aatttccaaa aaatccatat cagaatatac taattatttg
      721 tataattaat aaggaagaga aaaattcaaa acggctatga gatttccgcc tgaaaataat
      781 gaaataaaag tccatagtaa tgaataatag ctttatcaga ccccctttaa tgcaaacata
      841 gagaatactt cccttgaagc actatcaatt tctacttaac taaaactcta gctctatttc
      901 taaaattttg tcaaaaatag ttaaatactt ttatttattt taaataatga tatgcattta
      961 tggttatttg ttttagacag cctaaaacaa acggggaaat cgtgttttcc cgaacatggc
     1021 taatggatag cattttgtcc gtgaggaggc tgtgcaggtt tgtcagcagc caacagcgaa
     1081 tcgcctgctt gcgcggttgt gccgtctttt ttggtgtagc tgccttgttg agccaaagtg
     1141 ttgccgttac caagattttt gtttacatct tttcgagaaa attggctttg catttgcctt
     1201 aacaaagata tttctgctac tcgtgcttta ttatttatat tatatttact ctgcattttt
     1261 cttacaactt gtctcaactg actttgtgtt ttttgtaatt cacgttgtac cgattttcct
     1321 aaactttcat gtttggctgc ataattggta gaatcagttg acatttgtgt ataaaaattt
     1381 ttacgaaaat tttcgtaact cagattaatt acatccgtac ttgcagttat aaaatcttgt
     1441 ataaattcaa tagaaactga attatcatca gatttggctt tgttattttc catattgagc
     1501 ctctcttaat ttgaaaaaat taacataaac atttaaaaat aaaacaaaat tatataataa
     1561 aaaaaataat gagaatataa aggataaaaa gagagttaag ttatttaatc ggacttgttc
     1621 tctataaatc ataaggcacc aaataagcca taataaattt agtaaataaa aactgcttat
     1681 acccaacttt cttttcttgg aacctattat tatttcaact ctggatgaaa aaatagaatt
     1741 taaaaatttt tttctttgat atatcgttaa tatctcccta gtttttctta aaaaaatata
     1801 atcatatata tactacacaa cattggtaat aaataaatta aaagcgaaag gtaattaaat
     1861 tgataattgt aaattatata ataaacaaca tacgaagaaa aaattattat agatgatttg
     1921 ctatacgaat aaaaaaatat cctacctagc ccgaaccttc ttataatttg tactatgtga
     1981 tcattcattt caatatccat ttaagctttc aattaatttt ctatattttt caatggcatg
     2041 tatcatttgg ttgatgatca agccatgtat gcaaagattg gaatatggta tctgtcgtgc
     2101 taataatgcc cccgttactg tttaatttgc gcacaggaaa accgtcatat gcagcaat
//
LOCUS       DAXHNP010000221         2046 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.221, whole genome shotgun sequence.
ACCESSION   DAXHNP010000221 DAXHNP010000000
VERSION     DAXHNP010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.221"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..142)
                     /locus_tag="ACFM5C_002039"
     CDS             complement(<1..142)
                     /locus_tag="ACFM5C_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6069673.1"
                     /translation="MRKSRLSRYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHR
                     LRL"
     gene            403..1875
                     /gene="pyk"
                     /locus_tag="ACFM5C_002040"
     CDS             403..1875
                     /gene="pyk"
                     /locus_tag="ACFM5C_002040"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFC6069674.1"
                     /translation="MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVR
                     FNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
                     VLDAALEGEGTREAVGLDYRDLPDDVTAGDVLWLDDGLLTLTVESVEGSRIITRVENS
                     HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
                     EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
                     RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
                     YPFETVSQMAIICAAAEKEQDSLNGVAEQAEYPEAVSTNLAVAGGAVSVARAVHAKAI
                     VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
                     VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
BASE COUNT          534 a          574 c          534 g          404 t
ORIGIN      
        1 gtaatcgtaa acgatgaaaa taataggctg cggtattttt attaacgcct actaactctg
       61 ctgccgttct tgcagttaca cctgcgacaa acagttcaat gagtttattt tgtttatacc
      121 ggcttagacg actttttctc atagggataa ttctaactta atttgaattt ccctagttat
      181 ctaggacagc tccaaaaata aatttagcct aagtcataaa accgtgtaat tttgcaccaa
      241 aaaagacggt ttgcaggtaa aatatcaaac tattaattta aatcatattt ttacagaata
      301 ttccgccgca ttcatcaaat ggacatcaaa ccggttccaa atttctgtaa ttttgcaaca
      361 aaataccgca aaacacccga ttgagaccga aaggactttc atatgaacca gacaagccgc
      421 gatctgaccc gcatcagcca caacaccaaa atcgtcgcca ccttggggcc gggcagcaac
      481 aacgtcgaac tgttggaaga catgatccgc gtcggcggtc tgaacgtcgt ccgcttcaac
      541 ttcagccacg gcacgcccga attccatcag gaaaacgccc gcattgtgcg cgaggcggca
      601 aaacgcgccg gacaggaaat cgccatcatt gccgacctgc aagggccgaa aatccgcgtg
      661 ggcaaaatcg ccggcggcgg catcgaattg aacaaaggcg aaacgctggt actggatgcc
      721 gcgctcgaag gcgaaggcac gcgcgaggcg gtcggtttgg actaccgcga cctgcccgac
      781 gacgttaccg caggcgacgt attgtggctg gacgacggcc tgctgaccct gaccgtggaa
      841 tccgtcgaag gcagcaggat tatcacaagg gtggaaaaca gccatgtcct gaaaagcaac
      901 aaaggcatca acaaacgcgg cggcgggctg tccgcaggcg cgttgaccga aaaagacttc
      961 cgcgacctga aaaccgcgat tgccatcggt tgcgactacc tcgccatcag ctttgtgaaa
     1021 tctgccgaag atttgcacat cgcgcgcgcc aaagtcgaag aagaaatgaa gggcagcact
     1081 gccgtgcgcc ccggtttggt ttccaaaatc gaacgcgtag aagcgattga aaaccttgat
     1141 gaaatcatcc tcgccggcga cggcattatg gttgcgcgcg gcgacttggc ggtcgaagtc
     1201 ggacacgccg ccgtccccgc cctgcaaaaa cggatgatcc gccgcgcccg cgagttgcgc
     1261 cgcttcagca ttacggcgac gcaaatgatg gaatcgatga ttaccaaccc cgtgccgacc
     1321 cgcgcggaag tcagcgatgt ggcaaacgcg gtattggacg gtaccgatgc ggtgatgtgt
     1381 tccgccgaaa ccgccgtcgg cgcgtatccg tttgaaaccg tcagccaaat ggcaattatc
     1441 tgcgcggctg cggaaaaaga gcaggattcg ctcaacggcg ttgccgaaca ggcggagtat
     1501 cccgaagcgg tcagcaccaa cctggcggtt gccggcggcg cggtcagcgt ggcgcgcgcg
     1561 gttcacgcca aagcgattgt cgccctgacc gaaagcggtt cgaccgcctt tgaaatcagc
     1621 cgccacaaca tcaccctgcc gattttcgcg ctgaccccga gcgtttccgc ccaacgccgt
     1681 atggcgatgt accgcggcgt gcgcccgctg attttggcaa ccagtaccga ccacgacacg
     1741 gcgttgaacg aagtcgaaac catgctggtg gaacacaaca tcctgcattc cggcgaccaa
     1801 tacatcatca ccagcggctc gcaaatgcgc gaatccggtt cgaccaatac gctggaagtg
     1861 ctgcgcgtca aataatccgc cctgagtgga aaatgccgtc tgaagtcgat gcccgaggct
     1921 tcagacggca ttttttgcgg cggcgcggcg gttcaggcaa actgaaaaaa ttgtgcaaat
     1981 ccggcaacat cagataaaat tgagtaccta tactaaagcg aaacaaggca tttccgactg
     2041 cctttt
//
LOCUS       DAXHNP010000222         2006 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.222, whole genome shotgun sequence.
ACCESSION   DAXHNP010000222 DAXHNP010000000
VERSION     DAXHNP010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.222"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..196)
                     /locus_tag="ACFM5C_002041"
     CDS             complement(<1..196)
                     /locus_tag="ACFM5C_002041"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069675.1"
                     /translation="MSNDALPFFAGGCFYIFFNSTDCILEDVFRYGAGKAFSVKGLSD
                     RAVFYSGLTKTSTALPRLAVL"
     gene            301..1758
                     /locus_tag="ACFM5C_002042"
     CDS             301..1758
                     /locus_tag="ACFM5C_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6069676.1"
                     /translation="MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIY
                     LYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVML
                     GHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
                     AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSK
                     GQGKTAAAVGITLIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSS
                     DNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSL
                     WVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFAL
                     IVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAG
                     DEIGFYRLLFYIGATTGFLLLLLVPKLNKMLEGTD"
BASE COUNT          451 a          601 c          463 g          491 t
ORIGIN      
        1 atagtacggc aaggcgaggc aacgccgtac tggtttttgt taatccacta taaaaaaccg
       61 ccctatcgga taagccctta acagaaaagg ctttacccgc gccgtatcgg aacacatcct
      121 ctaaaataca atccgttgaa ttgaaaaaaa tataaaaaca tccgcccgcg aaaaacggca
      181 gcgcgtcgtt tgacaaagaa tgaaaatatc ggttaaaaac cgattttcat acaaaaaaca
      241 ccgctgccgt ccgcatccgt ttcagacggt attgagagaa aatcttttag gagaaccttt
      301 atgtcccggc atcccgcccc caccggagaa aaaacattct tcggccaccc cttccagctt
      361 tccaccctct tccatatcga attgtgggaa cgtttttcat tttacggaat gcagggcatc
      421 ctgctgattt acctctacta caccgccgac aaaggcggct tgggcataga caaaaccctc
      481 gccggcggca ttgtcggcgc atacagcggc agcgtgtacc tgtccaccat tttgggggcg
      541 tggtttgccg accgagtatg gggtgcggaa aaaaccctct tcctctcggg catcgtcgtg
      601 atgctcggac acatcgtcct tgccgccgcc ccgggcctgt acggtctttt aatcgggctg
      661 atattcatcg cattgggcag cggcggtgtg aaatctacgg ccagttctat ggtgggcgca
      721 ttatacgaac aggacgaaat gcgcccgctg cgcgatgcgg gattttccat tttctacatc
      781 gccatcaaca tcggcggctt cctgggcccg ctgctgaccg gcctgctgca ggaaaacatc
      841 ggtttccatt atggtttcgg cgcggcggcg gtcggtatgg cattcggctt gtggcgttat
      901 tccttgggac gtaaaaacct gccccacccc accgtccccc atccgctttc aaaaggacag
      961 ggcaaaactg cggccgccgt cggcatcacc ctcatcgccg cacttgcaac cgccatcaaa
     1021 accgggcttg tcaacctcga caatttctcc ggcatcctct tatctaccgt catccttgcc
     1081 gtcattgcct atttcgcccg cctgctgacc aacccccgcg tcagttccga caacaaacgg
     1141 cacatcatcg cctacatccc gcttttcctg accatctgta tgttttgggc cgtctggttt
     1201 cagatttaca ccgtggcaac cgtctatttc gacgaaaccg tcaaccgcac catcggttcg
     1261 tttaccgtgc ccgtcgcctg gaaagattcc atgcaaagcc tgtgggtcat cctgttttcc
     1321 ggactgatgg cggcaatgtg gacaaaaatg gggcgcaaac agcccaaaac cccgctgaaa
     1381 ttcgctatgg cggtatttgt taccggcgcg tcgtttttgg gattcgtccc ctttatttcc
     1441 gccggcacgc cgatgcctat tgcggttttc gcactgattg tccttgccat cacgataggc
     1501 gaactgatga tttccccgat tgcgctgtcc atctccacca aaatcgcacc gcctttattc
     1561 aaaacccaaa tggtcgccct taatttcctt gccttttcat taggcttcac tttgggcggc
     1621 gtattgtttg agaaaggcta tcaggcgggc gacgaaatcg gcttctaccg gctgctgttc
     1681 tacatcggcg caaccacagg cttcctgctg ctcctgctcg tccccaaatt gaacaaaatg
     1741 ctcgaaggca cagactaagt cccgccccga tgcgccgatg ccgtctgaac ccttcagacg
     1801 gcatttttcc gcataatgaa accaaaccgt ttccacccga caggacaggc tccccccaac
     1861 cggaaggcag cctgccgatt gtcatttgaa tatctgactg attccgtctg tttgcaaggg
     1921 aaatagccgt ttatttccgc ttgggcggaa accggttcta ttgagtaaaa ggcattttat
     1981 ccgactaaat tagtgctgca tcaacg
//
LOCUS       DAXHNP010000223         1971 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.223, whole genome shotgun sequence.
ACCESSION   DAXHNP010000223 DAXHNP010000000
VERSION     DAXHNP010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.223"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(241..672)
                     /locus_tag="ACFM5C_002043"
     CDS             complement(241..672)
                     /locus_tag="ACFM5C_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069677.1"
                     /translation="MKNNIFLNLNKKSINNNHFVISIFFETIYQFETKDTLLECFKNI
                     TTTGHFGVIGAQYEKIDATRWIGDYEEVNGFEYIDKAPSIYFSVGDDFNPEELIIPIN
                     LAYHYFNIAISDFLIAHPEYQKKCKEIQKTYSQTNCSLHET"
     gene            complement(688..>1971)
                     /locus_tag="ACFM5C_002044"
     CDS             complement(688..>1971)
                     /locus_tag="ACFM5C_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
                     /protein_id="HFC6069678.1"
                     /translation="NTAHGEAASKIKQLDQHYIVHKIAHAIAGCAAAAANKGKCQDGA
                     IGAAVGEIVGEALTNGKNPDTLTAKEREQILAYSKLVAGTVSGVVGGDVNAAANAAEV
                     AVKNNQLSDKEGREFDNEMTACAKQNNPQLCRKNTVKKYQNVADKRLAASIAICTDIS
                     RSTECRTIRKQHLIDSRSLHSSWEAGLIGKDDEWYKLFSKSYTQADLALQSYHLNTAA
                     KSWLQSGNTKPLSEWMSDQGYTLISGVNPRFIPIPRGFVKQNTPITNVKYPEGISFDT
                     NLKRHLANADGFSQKQGIKGAHNRTNFMAELNSRGGRVKSETQTDIEGITRIKYEIPT
                     LDRTGKPDGGFKEISSIKTVYNPKKFSDDKILQMAQNAASQGYSKASKIAQNERTKSI
                     SERKNVIQFSETFDGIKFRSYFDVNTGRITNIHPE"
BASE COUNT          527 a          387 c          355 g          702 t
ORIGIN      
        1 caggatgcga ctgttctcat tggcatacgg tgcgctaatg ctcacaccgg ttttacccga
       61 aagttctgca gcaagcgtag ggggtgtctt cagcacgcac gcgtctgggc agtatatagg
      121 gaatctgaat atttacttgc ataacaaatg ccgtctgaaa aattgtgagc ttttcagacg
      181 gcattgagct gtaaatcatg gaacgcgtgc gtgctgaagc acacacctta cgcatggatt
      241 ttaggtttca tgcaggctac agtttgtttg agaatatgtt ttttgtattt ctttacactt
      301 tttttgatat tcagggtgag ctattaagaa atcagatatt gcaatattaa agtaatgata
      361 tgctaaatta ataggtataa ttaattcttc aggattgaaa tcatctccaa ctgaaaaata
      421 aatagaagga gctttatcaa tatactcaaa tccatttacc tcttcataat ctccaatcca
      481 tctggtagca tctatttttt catattgagc acctattact ccaaaatgtc cggtagttgt
      541 aatattttta aaacactcta aaagcgtatc tttagtttca aattggtaaa ttgtttcaaa
      601 aaaaatcgaa ataacaaaat ggttgttatt tatagatttt ttatttaagt ttagaaaaat
      661 attatttttc ataatttttc ctttaaatta ttctgggtga atgtttgtaa ttcttcctgt
      721 atttacatca aaatatgatc taaatttgat tccgtcaaag gtttctgaga attgaatgac
      781 attttttctt tccgatattg atttagttct ttcattttga gcaattttag aggcttttga
      841 atatccttgt gaagcagcat tttgagccat ttgaagtatt ttatcatcag aaaatttttt
      901 aggattataa acagttttta tacttgaaat ttccttaaat ccaccatcag gtttacctgt
      961 cctgtctagt gtaggaatct catatttaat tcgggtaatg ccttcaatat cagtttgggt
     1021 ttcagatttt acgcgtcctc ctcgtgaatt tagttctgcc ataaaattgg tgcggttatg
     1081 ggctccttta atgccctgtt tttgactaaa accatcagca tttgccagat gtctttttag
     1141 gtttgtatcg aaactgatgc cttccgggta tttgacatta gtaataggtg tattttgttt
     1201 tacaaaccct cttggtattg gaatgaatct aggattaact cctgaaataa gtgtataacc
     1261 ttggtcggac atccattcgg ataaaggctt tgtattgccc gattgaagcc aagatttagc
     1321 agcagtattc aaatgataag actgtaaagc caaatctgct tgggtgtaag atttgctgaa
     1381 taatttatac cattcatcat ctttaccaat tagacctgct tcccaagatg aatgaaggct
     1441 tctactatcg atcaaatgtt gttttctgat tgttctacat tcagtactac gggatatatc
     1501 cgtacatatt gcaatcgaag cagcaagtct tttatcagca acattttgat acttttttac
     1561 agtatttttt ctgcacagtt gaggattatt ctgtttggcg catgcagtca tttcgttatc
     1621 aaattctcta ccctctttgt cgctaagctg attatttttc accgctacct cagccgcatt
     1681 cgccgccgca tttacatcgc cgccgaccac accgcttacc gtaccggcaa ccagtttgct
     1741 gtatgccaaa atctgttcgc gttctttagc tgtcaaagtg tcaggatttt tgccgtttgt
     1801 caaagcctcc ccgactatct cgcccacagc cgcacctatc gcaccatcct gacacttgcc
     1861 cttattcgcc gccgctgccg cacagcccgc tatggcatgg gcaatcttgt ggactatgta
     1921 gtgctgatcc aactgtttga ttttactggc tgcttctcca tgcgcggtat t
//
LOCUS       DAXHNP010000224         1899 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.224, whole genome shotgun sequence.
ACCESSION   DAXHNP010000224 DAXHNP010000000
VERSION     DAXHNP010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.224"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(262..525)
                     /locus_tag="ACFM5C_002045"
     CDS             complement(262..525)
                     /locus_tag="ACFM5C_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069679.1"
                     /translation="MDKEIKICPRCEQGYLYHAKPKYFSGEVILCDECYAMWLGDMKI
                     FYGQYGKDFYDYHEFMKDKGIEEINMWEGELFDHPYYEDEKFK"
     gene            complement(544..>1899)
                     /locus_tag="ACFM5C_002046"
     CDS             complement(544..>1899)
                     /locus_tag="ACFM5C_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6069680.1"
                     /translation="KQEGLTEAGAAIIALAVTVVTSGAGTGAVLGLNGAAAAATDAAF
                     ASLASQASVSFINNKGDVGKTLKELGRSSTVKNLVVAAATAGVADKIGASALNNVSDK
                     QWINNLTVNLANAGSAALINTAVNGGSLKDNLEANILAALVNTAHGEAASKIKQLDQH
                     YIVHKIAHAIAGCAAAAANKGKCQDGAIGAVVGEIVGEALVKNTDFSGMTASEIEKAK
                     ANITAYAKLVAGATVGVTGGNVDVAANASETAVKNNALDIIWDIGNLVWDGGKWIYAK
                     SIGDKQMAREAAIDFGVDAAAAAVPFVPAGATKISRGGAYVLKAGDEAVDTAKAIQEI
                     QKQTGIKLTYDKVNKVWTTPAGLDYGLDAKHGNRIKHVLAHTIPNPNKPVHSVFNVSR
                     KEVLPLVDEAWRMKGNPLPNDSSVYLVDMKKPIGTKGETKVRIVVQKGTNKIISAYPQ
                     K"
BASE COUNT          457 a          487 c          374 g          581 t
ORIGIN      
        1 ttggctgttt gggcgataac gcgtacgggc agtttggttt cgttcagctc gtttttgctg
       61 taattgcttt tacccacttt gatgccgatg aaacgggtac ttttctgaac attcaattgg
      121 tgttggtgaa tgccttcggc tgccagcagt tgcattgagg ccgtctgaaa aacggatatt
      181 cagacggcct attgctactt taaataatat ttgggtttaa aatatcatcg tatttcccaa
      241 attcggggaa cagaaaatca attatttaaa tttttcatcc tcataatatg ggtgatcaaa
      301 aagctctcct tcccacatat ttatttcttc tatgccttta tctttcataa actcatgata
      361 atcataaaaa tcttttccat attgtccgta aaaaattttc atatccccaa gccacatagc
      421 ataacattca tcgcataaaa tgacctcccc agagaaatat ttaggctttg catgataaag
      481 gtagccttgc tcacatcttg ggcaaatttt aatttcttta tccataagag attcctttct
      541 taattatttc tgaggatatg cagaaatgat tttatttgtt cctttttgca caacaatccg
      601 cacttttgtt tctccttttg ttccaatagg tttcttcata tctacaagat atacggatga
      661 atcatttggc aaaggatttc ctttcattct ccaagcttca tcaaccaaag gcaaaacttc
      721 tttacgggac acattaaaaa cagaatgaac aggtttgttt ggatttggaa ttgtatgggc
      781 taaaacatgt ttaatcctat taccatgctt agcatctaac ccataatcta accccgccgg
      841 tgttgtccaa accttattaa ccttatcata agtaagcttg attccggtct gcttctgaat
      901 ttcctgtatg gctttagccg tatcaactgc ttcgtctccc gccttcagaa cataagcccc
      961 gcctcggctg attttagtcg cacctgccgg aacaaaggga acggcagctg cggcggcatc
     1021 cacaccaaaa tcaatcgccg cttctcgagc catctgctta tcgccaatag atttggcgta
     1081 aatccattta ccgccgtccc atacgaggtt gccgatatcc caaataatat ctaatgcatt
     1141 atttttaaca gctgtttcgg aagcatttgc cgccacatca acattgcctc ctgtaacacc
     1201 tacagtcgct ccggctacca attttgcata cgcagtaata ttcgctttag ctttttcaat
     1261 ttcagaagca gtcataccgc tgaaatcggt attcttaacc aaagcctccc cgacaatctc
     1321 ccccacgacc gcaccaatcg cgccgtcctg acacttgccc ttattcgccg ccgctgccgc
     1381 acagcccgct atggcatggg caatcttgtg gactatgtag tgctgatcca actgtttgat
     1441 tttactggct gcttctccat gcgcagtatt caccaaagcc gcaaggatat tcgcttccag
     1501 attgtctttc aggctgccgc cgttgacagc ggtattaatc agtgcggcac tgcccgcatt
     1561 ggctaggttg acggtcaggt tgttgatcca ctgcttatcg ctgacattgt tcagtgccga
     1621 agcgccgatt ttgtcggcta cgcctgcggt agcggcggca accaccagat ttttcaccgt
     1681 gctgcttctg cccagctctt tcagggtttt gccgacatcg cctttgttgt tgatgaacga
     1741 tacggaagcc tggctggcca aagaggcgaa tgctgcatcg gttgcggcgg cggccgcacc
     1801 gtttaatccc aatacggctc cggttcctgc gcctgaggtg accacggtaa cggccagtgc
     1861 gataatcgcc gcacctgctt cggttaagcc ctcctgttt
//
LOCUS       DAXHNP010000225         1883 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.225, whole genome shotgun sequence.
ACCESSION   DAXHNP010000225 DAXHNP010000000
VERSION     DAXHNP010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.225"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(127..1437)
                     /locus_tag="ACFM5C_002047"
     CDS             complement(127..1437)
                     /locus_tag="ACFM5C_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HFC6069681.1"
                     /translation="MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKSLRVAVEG
                     GKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIRGAIDKAEIALQQG
                     RATILFVDEVHRFNKAQQDAFLPYVENGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
                     SLSSDDLKKLIAKVLALPEYQEFTIETDAQKLLVNTADGDARRLLNLLEQLLGAAETR
                     RLKTLTAEFLADSLGAQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGG
                     TDPRYLARRIVRIAWEDIGLADPRALQIANDAAATFERLGSPEGELALAQAVLYLAAA
                     AKSNAGYKAYNQMRRFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYAA
                     GESYMPDCLDEPDFYQPVPRGLEIKIGEKLEWLKSLDEEVLKAK"
     gene            1692..1883
                     /locus_tag="ACFM5C_002048"
                     /pseudo
     CDS             1692..1883
                     /locus_tag="ACFM5C_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213469.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          454 a          494 c          480 g          455 t
ORIGIN      
        1 ttaatccact ataccacgtt gtctttattg gctttatcaa taaacaggat aagacctgaa
       61 aaaaagccga tacgcctttt tggtgtaccg gctttgccat actgttctgc ttcagacagc
      121 attgcttcat tttgccttta atacttcttc gtccagcgat ttcaaccatt ccagcttttc
      181 gccgattttg atttccaacc cgcgcgggac gggttggtag aagtccggtt cgtccaagca
      241 gtcgggcata tagctttcgc cggcggcgta ggcgttcggt tcgtcgtggg cgtagcggta
      301 ttcgcgtccg tagcccaatt ccttcatcag cttggtcggg gcattgcgca ggtggacggg
      361 tacttcgtcg ctggcgtttt ctttgacgaa acggcgcatt tgattgtatg ccttgtagcc
      421 cgcgttggat ttcgcggcgg cggcaagata caataccgct tgcgccaaag ccagttcgcc
      481 ttcgggcgag cctaagcgtt cgaaggtggc ggcggcatcg ttggcgattt gcaaggcgcg
      541 cgggtcggca agcccgatgt cttcccaagc gatacgcacg atgcggcggg cgaggtagcg
      601 cgggtcggtg ccgccgtcga gcatacggca gaaccaatac agcgcggcgt tcggatgcga
      661 accgcgcacg gatttgtgca gggcggagat ttggttgtag aaactctcgc cgcctttgtc
      721 gaaacggcgg atttgcgccc cgagactgtc ggcgagaaat tcggcagtca gggttttcag
      781 acggcgcgtt tcagcggcgc ctaacagttg ttccaacaaa ttcaacaatc tgcgcgcatc
      841 accgtcggcg gtattcacga gtaatttttg cgcatccgtt tcaatcgtaa actcttggta
      901 ttcaggcaaa gccaatacct tggcaatcag ctttttcagg tcgtctgaag acaaggattg
      961 caaaacatac acctgcgcgc ggctcaacag cgcgggattc acttcaaacg acggattttc
     1021 cgtcgttgcg ccaataaagg tcagcaaacc gttttccaca taaggcaaaa acgcatcctg
     1081 ctgcgccttg ttgaagcggt ggacttcatc gacaaacaaa atcgtcgccc tcccctgctg
     1141 caaagcgatt tcagccttgt cgattgcccc gcgtatgtct tttacgccgg aaaacacggc
     1201 ggaaacaggc agaaactggg cattgaaact ctgcgccaaa atccgcgcca acgtcgtctt
     1261 gcccacgccc ggcggccccc acagcaacat agaatgcggc ttgccccctt ctaccgccac
     1321 gcgcaaagat ttaccttcgc cgatgaggtg ttcctgcccc accacgtcgt caagcgtatg
     1381 cggacgcaat cgttcggcaa gcggcgcgtc gggttctcgg gcaaacaaat cggtcataac
     1441 ggctccgtca acaggttttc aaacaatatg attatacggc agggaacggc ggcgtgccgc
     1501 atacggattc cgcccctccg tttgccttaa gccgatatta ggcgcatact ggaaaagacg
     1561 agagacttca cacaatatat ccggcacgga gaccgattcc gcaccggcat gacaataccc
     1621 aaatcagcgt ttcaattaaa cattaaggag actaaaatag aaaatttgct ttatctacca
     1681 ttgctttgtt gattcaatcg gcattatgtt ttgaggcgga agcccatgaa tatactaata
     1741 ttcaagagat ggaatgggtg tctttatttt ctgatccgca aaaagacgat gatagtctta
     1801 taacccttaa agatgaaaaa atcactgtaa aaaactatat tgtgccttgg tggaaaaaag
     1861 tgaaaacttt agaaaattag aac
//
LOCUS       DAXHNP010000226         1828 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.226, whole genome shotgun sequence.
ACCESSION   DAXHNP010000226 DAXHNP010000000
VERSION     DAXHNP010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.226"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..98)
                     /locus_tag="ACFM5C_002049"
     CDS             complement(<1..98)
                     /locus_tag="ACFM5C_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6069682.1"
                     /translation="MSTFFQQTSQAMIAKHIDRFPLLKLDQVIDWQP"
     gene            154..567
                     /locus_tag="ACFM5C_002050"
                     /pseudo
     CDS             154..567
                     /locus_tag="ACFM5C_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212999.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fe(3+)-pyochelin receptor"
     gene            710..1768
                     /gene="dinB"
                     /locus_tag="ACFM5C_002051"
     CDS             710..1768
                     /gene="dinB"
                     /locus_tag="ACFM5C_002051"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HFC6069683.1"
                     /translation="MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICA
                     ASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLS
                     LDEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN
                     GQFVLPPHKVMAFLETLPLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGR
                     YGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR
                     KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCASLLQAAQMLMARVPPQTEDAFRLI
                     GIGVGHLVPKNQQQDLWA"
BASE COUNT          432 a          491 c          504 g          401 t
ORIGIN      
        1 ggctgccaat caatcacttg atccaacttc aatagaggga agcggtcgat gtgtttggca
       61 atcatggctt gggaggtttg ctggaagaag gtgctcatgg aaaatcccct aaatggcttg
      121 gtgggaattt aggggatttt ggggaatttt gcaaaggtct caggttatac ctacaacaag
      181 agcaggtata ggaatgcagc cgaagtcaac gccgaacgcc ttgccaaaaa ttccagtgca
      241 gacccgtaca acttcagcaa tttcacaccc gtgcatatat tccgtttcgg aacgagtttc
      301 catataccga atacggggct gaccgtcggc ggcggcgtgt ccgcacaaag cagcacaagc
      361 agcctgtaca acatcaggca gggcggctac gggctgatag acggtttcgt ccgttacgaa
      421 ttgggcaaac acgccaaatt gagcctcatc ggtacgaact taaacggacg cacttatttt
      481 gagaacaact acaaccgtac gcgcggcgca aacaacttct atggagagcc gcgcactgtc
      541 agcatgaaac tggattggca gttttaattg aaaaccgtag ttttgcggat gccgtctgaa
      601 cagggtatgt ttcagacggc atttttatgg aggcaggcct atcggggcgt atatttggaa
      661 tttgctcgat gccggcagta gaatatcctt tttatcttca gcagagccga tgtcttcacg
      721 caaaatcatc cacatcgaca tggacgcgtt ctacgcatcg gtagagctgc gcgaacagcc
      781 gcatttgaaa gggcggccgg tggtcgtcgc gtgggagggc gcgcgttcgg tgatttgcgc
      841 cgcatcgtat gaggcacggc agttcgggct gcattccgcg atgtcggtgg caacggcgaa
      901 aaggctgtgt ccgcaagcgg tgtatgtgcc gccgcatttc gatttgtacc gtcaggtttc
      961 cgcgcagatt cacgccgtat tcaggcgtta taccgattta atcgaaccct tgtcgctgga
     1021 cgaagcctat cttgacgtta cccgtaattt caaaaacatc ccttacgcca gtgaagttgc
     1081 caaagaaatc cgtgccgcca tttttgcgga aacaggtttg actgcatccg caggcatcgc
     1141 gccgaacaaa tttctggcga aaatcgcgtc ggactggcgc aagccgaacg ggcagtttgt
     1201 gttgccgccg cacaaagtca tggcattttt ggaaaccctg cctttgggca aaatccccgg
     1261 cgtgggcaag gtaacgctga aaaaaatgca gtcgctgggt atgcggacgg cgggcgactt
     1321 gcgccgtttc gagcgcggcg agctcttaaa ccatttcgga cgctacggct accgcctcta
     1381 tgatttggcg cgcggtacgg acgaacgccc cgtcaaagcc gaacgcgaac gcctccaaat
     1441 ctccacagaa attaccctgc ccgaagacct gccgctcgag caggctgccg gacacctccc
     1501 ccatcttgcc gaagacttgt ggcggcaaat cacgcgcaaa aacgtcgaag cccaaagtgt
     1561 aacgctcaag ctgaagacct acgatttccg catcatcacg cgcacgctga cttattcctc
     1621 cgtattgccc gactgcgcct ccctgcttca ggcggcgcaa atgttgatgg cgcgcgtccc
     1681 gccgcagacg gaagacgcgt tccgccttat cggtatcggc gtggggcatc ttgtgccgaa
     1741 aaaccagcag caggatttgt gggcgtaaac cgctttacgc gcgccgtcca aaaaatatgc
     1801 cgtctgaacg gttttcagac ggcatggc
//
LOCUS       DAXHNP010000227         1827 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.227, whole genome shotgun sequence.
ACCESSION   DAXHNP010000227 DAXHNP010000000
VERSION     DAXHNP010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.227"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            451..1755
                     /locus_tag="ACFM5C_002052"
     CDS             451..1755
                     /locus_tag="ACFM5C_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HFC6069684.1"
                     /translation="MKKHIWAASLLPASLSAEPLNWWKPYSAVNSGDTAWVMTAAALV
                     LLMTLPGLALFYGGMVRKKNLLSTMMHSFSIATLVGILWVAVGYSLAFTPGNAFIGGL
                     GRVFLSGMQIDATAQMLTVSPNAPTVPEPVFMFFQMTFAIISTAIITGAFAERMKYSA
                     MMLFSGIWFLLVYVPGAHWVWGGGFMSKGGVLDYAGGTVVHINAGIAGLVAALVLGRR
                     IGYGREAMPPHNMAMTLIGAAMLWFGWFGFNAGSALAADAAAGMAMAVTQVSAVFGAA
                     GWLACEKIAGHKPSALGLASGAVSGLVGITPAAGFTGPSGAAAIGILTAAACFVSVTV
                     VKHKLRYDDSLDAFGIHGFGGLVGGILTGIFFDNRIFGGDAAVWQQLWIQVKDGFVMA
                     AYSGLMSWAILKVVGKICGGLRVGKDVEREGLDLNIHGERVE"
BASE COUNT          372 a          456 c          531 g          468 t
ORIGIN      
        1 aggtgctgaa gcaccaagtg aatcggttcc gtactattcg tactgtctgc ggcttcgccg
       61 ccttgtcctg atttttgtta atccactata tttccaatta aaaattttta atatattaat
      121 caataaatta attttataaa ataaaaatat tgtcaacaat attttgcctt atcgcccaaa
      181 cctctgtata ttttcctaca gtaaattgtt gacaatccat acgcccacat atgcgccgcc
      241 taaggataaa tcctcccgcc ggacaacggg tgcaagggat tggatgcgat atttccatat
      301 tcaaacaagg gatttgtttc acgcacaggg cggcacatcg gcaaaatccc cgcgccgccc
      361 cggtccggca gggcttgcgt ccctcccgga caagccccga ccccgccttt ccgaaagacg
      421 ggctcaacca ttaaggaaac tttagtcaaa atgaaaaaac acatatgggc ggcatctttg
      481 ctgccggcat ccctatcggc agaaccttta aactggtgga agccttattc cgccgtcaat
      541 tcgggcgata ccgcctgggt gatgactgcg gctgccttgg tactgttgat gacgcttccc
      601 gggctggctt tattctacgg cggtatggtg cggaaaaaaa acctgctctc gacgatgatg
      661 cacagctttt ccatcgcgac attggtgggc atcctttggg tcgccgtcgg ctattcttta
      721 gcgttcacgc cgggaaatgc ctttatcggc ggtttggggc gcgtattttt aagcgggatg
      781 cagatagacg ctaccgcaca gatgctgacc gtgtcgccca atgcgccgac tgttcccgaa
      841 ccggtattta tgttttttca gatgacgttt gccattattt cgaccgccat tattaccggc
      901 gcgtttgccg aacggatgaa atattcggca atgatgctgt tttcgggcat atggttttta
      961 ttggtttatg tgccgggcgc gcattgggtg tggggcggcg gctttatgag caagggcggc
     1021 gtattggatt atgctggcgg tacggtggtg cacatcaatg ccggtatcgc gggactcgtc
     1081 gccgccttgg ttttgggcag gcgcataggc tacgggcgcg aggcgatgcc tccgcacaat
     1141 atggcgatga cactgatcgg cgcggcaatg ttgtggttcg gctggttcgg ctttaacgcc
     1201 ggatcggcgc ttgcggcaga cgcggcggcg ggtatggcga tggcggtaac gcaggtgtcg
     1261 gccgtattcg gcgcggcagg ctggcttgcc tgcgaaaaaa tagcgggaca caaaccttcc
     1321 gctttggggc tggcttccgg cgcggtttcc ggtctggtcg gcatcacccc tgccgccggc
     1381 tttaccggcc cgtctggagc ggccgccatc ggtatattga ctgccgccgc gtgctttgtg
     1441 tccgtcaccg tcgtcaaaca caaattgcgt tacgatgatt ctttggacgc tttcggcata
     1501 cacggattcg gcgggctggt gggcggaata ttgaccggca tctttttcga caaccgcatt
     1561 ttcggcgggg atgcggcagt ttggcagcag ttgtggatac aggtaaaaga cgggttcgtt
     1621 atggcggcat acagcgggct gatgagttgg gcgattttga aggtcgtggg gaaaatctgc
     1681 ggcggcctgc gcgtcggcaa ggatgtcgaa cgcgaaggtt tggatctgaa tatccacgga
     1741 gaacgcgtgg aataagggcg gctatgccgt ctgaagcctg aaaatcgggt ttcagacggc
     1801 atttttcacg tttgccgccg atggata
//
LOCUS       DAXHNP010000228         1818 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.228, whole genome shotgun sequence.
ACCESSION   DAXHNP010000228 DAXHNP010000000
VERSION     DAXHNP010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.228"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..1307)
                     /gene="pilC"
                     /locus_tag="ACFM5C_002053"
     CDS             complement(<1..1307)
                     /gene="pilC"
                     /locus_tag="ACFM5C_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6069685.1"
                     /translation="MNKTLKRRVFRHTALYAAILMFSHTGGGGAQAQTRQYAIIMNEG
                     NQPEVQWNGSYSIKDKDRKREYTHYNHSRGGSSVSFNNSDELVSQQSGTAVFGTATYL
                     PPYGKVSGFDADGLNKRGNAAGWIRTTRIALAGYSYEGVVCRSGTGCPKLVYKTRFSF
                     DNPDLVKNAGRLDRHTDPSRENSPIYKLKDYPWLGVSFNLGAEGTTKDGKTINKLVSS
                     FDEKNSSNNNLVYTTEGRDISLGDWQREKTAMAYYLNAKLHLLDKKGIKDITNKTVQL
                     GVLRPSIDVRLQRNTGLAGLLNFWASWDIKDNGQIPVKLGLPEVKAGRCINKANPNPK
                     AQALSPALTAPALWFGAGQDGKAEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRY
                     SLADLSASDIQSKEPSFTSRQTIIRLDGGVHEIKLDRSNEATG"
BASE COUNT          373 a          489 c          482 g          474 t
ORIGIN      
        1 aaaccggtgg cctcattgct tctatccagt ttgatctcat gtacaccgcc atccaatcgg
       61 atgattgttt gccgacttgt gaaactcggc tctttacttt gaatatccga cgcactcaag
      121 tctgcgaggg aatagcggcc gggtttgttg gggtcgtttt ttcttttcag attttgaagg
      181 aagatgcggc tgctcgaact gtcggggtag gtggaaaccg aagcggaata catctccgcc
      241 ttaccatctt gcccagctcc gaaccacagc gcgggggcgg tcaaggcggg ggaaagggct
      301 tgggctttgg gattggggtt cgctttgttg atgcagcggc ctgctttgac ttccggcagg
      361 ccgagcttga ccggaatctg cccgttatct ttaatgtccc aactagccca aaaatttagc
      421 aagccggcaa gccccgtatt tctttgcagc cgcacatcga tgctcggcct caagacaccc
      481 aactgcactg ttttgttggt gatatcttta atcccttttt tgtccagcag gtgcagtttg
      541 gcgttcagat aataggccat ggcggtcttt tcgcgctgcc agtcgcccaa ggaaatatcg
      601 cggccttccg tggtatagac gaggttgtta ttactactat tcttttcatc aaaagaagat
      661 accaatttgt tgattgtctt accatctttg gtggtaccct cggcacccaa attgaaagat
      721 acgcccaacc atggataatc cttcaatttg taaatgggcg aattttcgcg gcttgggtct
      781 gtgtgcctat ccagcctgcc cgcatttttt accaagtcgg gattatcgaa ggaaaatcgg
      841 gttttataga caagtttggg acagcctgtg ccgcttctgc atacgacacc ttcgtagctg
      901 tagcctgcca gcgcgatgcg ggtggtacga atccaaccgg cggcattgcc gcgcttgttc
      961 agcccgtcgg catcaaaacc ggaaaccttg ccgtagggcg gcaggtaggt ggctgtgcca
     1021 aaaacggcag taccgctttg ttgagaaaca agctcatcgc tattgttgaa tgagacagag
     1081 cttcctcctc gtgagtgatt ataatgagta tattcgcgct tcctgtcttt gtcctttatt
     1141 gaatatgacc cattccactg tacctcgggc tggtttccct cgttcatgat aatagcgtat
     1201 tgacgggttt gcgcctgcgc cccccccccg ccggtatggg aaaacatcaa gatggcggca
     1261 taaagcgcgg tatggcggaa aacccgcctt tttaaagttt tattcatcgt atttcctttt
     1321 cggtcaaacc ccccgccctt cgggcatccg tccttcgggg cggcaggatc aggctttgtc
     1381 cgggaggggt gcaagccctt ccgaatcagg gcggcgcctt atgtgccgcc ctgtgtgttg
     1441 gaacatattt tatcccttaa atcttgcttc gcgggatacc gtcggcggca ggcgcgccgc
     1501 aaacggcggg attcggcaaa ccgcccgatt ccgcgcccgc cgaattgctg gttggaaaac
     1561 ccctttggcc cggctgccaa agggggatgt tcggaaaagt aacacgcccc tttggccgga
     1621 tgcaatgtat agggttaccg cattattcta cccttgcgcg ctgatcatgg taaagcggtt
     1681 ttcggcaatc cgcaaccgcc tccttggccc gccattgccg cgaaagcggg aatccggaac
     1741 gtaaaatctc aaaaaaaccg ttttatccgg caagtttgcc cgccggcagg cccgccattg
     1801 ccgcctgcgc ggcaatgg
//
LOCUS       DAXHNP010000229         1816 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.229, whole genome shotgun sequence.
ACCESSION   DAXHNP010000229 DAXHNP010000000
VERSION     DAXHNP010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.229"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(194..1363)
                     /gene="porA"
                     /locus_tag="ACFM5C_002054"
     CDS             complement(194..1363)
                     /gene="porA"
                     /locus_tag="ACFM5C_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin PorA"
                     /protein_id="HFC6069686.1"
                     /translation="MRKKLTALVLSALPLAAVADVSLYGEIKAGVEGRNYQLQLTEAQ
                     AANGGASGQVKVTKAKSRIRTKISDFGSFIGFKGSEDLGEGLKAVWQLEQDVSVAGGG
                     ATQWGNRESFIGLAGEFGTLRAGRVANQFDDASQAIDPWDSNNDVASQLGIFKRHDDM
                     PVSVRYDSPDFSGFSGSVQFVPIQNSKSAYTPAHVVVNNKVATHVPAVVGKPGSDVYY
                     AGLNYKNGGFAGNYAFKYARHANVGRNAFELFLIGSATSDQAKGTDPLKNHQVHRLTG
                     GYEEGGLNLALAAQLDLSENADKTKNSTTEIAATASYRFGNAVPRISYAHGFDLIERG
                     KKGENTSYDQIIAGVDYDFSKRTSAIVSGAWLKRNTGIGNYTQINAASVGLRHKF"
BASE COUNT          464 a          467 c          414 g          471 t
ORIGIN      
        1 tatatgtgca aaccaaaccg aaaatgcgaa ataccgtctg aaaatctttc agacggtatt
       61 tactgtcttt attgccgttt ttcttccgta tccggatttt tgtttggggc tgagcagatt
      121 ggcagtcaga ttgcaatcga agaatgaatg caagccgtca aaaacaaagc tatccgcttc
      181 accgccccga tatttagaat ttgtggcgca aaccgacgga ggcggcatta atttgagtgt
      241 agttgccgat gccggtattg cgtttcagcc aagcgccaga cacgatggcg gaagtgcgtt
      301 tggaaaaatc ataatcaacg ccggcgatga tttgatcgta gctggtattt tcgccttttt
      361 taccgcgttc gatcaagtcg aaaccatggg catagctgat gcgtggaact gcattaccga
      421 agcggtagga agcagtcgcg gcaatttcgg tcgtactgtt tttggttttg tcggcatttt
      481 cagacaaatc caactgagcc gccaaggcga gattcaagcc gccttcctca tagccgcccg
      541 tcaggcggtg tacctgatgg tttttcaagg gatcggtacc tttggcttga tcactcgtcg
      601 cgctgccgat caagaacaac tcaaaagcat tacgtccgac attggcgtgt ctcgcatatt
      661 taaaggcata gttcccggca aaaccgccat ttttgtaatt cagaccggca taatacacat
      721 ccgatccggg cttgccgaca acagccggaa cgtgagtagc aaccttgtta ttcacaacaa
      781 catgagccgg cgtataggcg gacttgctgt tttggatcgg aacgaattga acgctgccgc
      841 tgaaaccgga aaagtccgga gagtcgtagc gtacagaaac cggcatatcg tcgtggcgtt
      901 tgaaaatacc caattgcgaa gccacatcat tgttgctgtc ccaaggatca atggcttggc
      961 tggcatcgtc aaactgattc gcaacgcgac cggcgcgcag cgtaccgaat tcgcctgcca
     1021 agccgataaa ggattccctg ttgccccact gggtcgcgcc gccgccggca acggatacgt
     1081 cttgctcaag ctgccaaaca gctttcagac cttcgcccaa atcctcgctc cccttaaagc
     1141 cgataaacga gccgaaatca ctgattttcg tcctgatgcg gcttttggcc ttagtaactt
     1201 ttacctgacc gctcgctcca ccgttagcgg cttgtgcttc agtcaattgc agctggtagt
     1261 tcctgccttc cacgccggct ttgatttcgc cgtataggct gacatcggca acggccgcaa
     1321 gcggcagtgc ggacaatacg agggcggtaa gtttttttcg catatcggct tccttttgta
     1381 aatttgataa aaacctaaaa acatcgggca aacacccgat acgtcttcaa ttataccccc
     1441 ccccccgcaa aaaaccattt ttcagaacaa atatctgata aatgccgcaa cctttatttt
     1501 aaaaatgatt atattttgat ataaaacaat agcttatttt ttcaaaaacg ttgtgtttct
     1561 acaacacaat tcaagcgcag acctcgtgcg agccgatgcg ctgctgcccg gatgcagtct
     1621 cggcttttta aaacgccata aaaaaacaca cgcggcactt tatagtggat taacaaaaac
     1681 cagtacggcg ttgcctcacc ttagctcaaa gagaacgatt ctctaaggtg ctgaagcacc
     1741 aagtgaatcg attccgtact atctgtactg tctgcggctt cgccgtcttg tcctgatttt
     1801 tgttaatcca ctataa
//
LOCUS       DAXHNP010000230         1810 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.230, whole genome shotgun sequence.
ACCESSION   DAXHNP010000230 DAXHNP010000000
VERSION     DAXHNP010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.230"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(26..349)
                     /locus_tag="ACFM5C_002055"
     CDS             complement(26..349)
                     /locus_tag="ACFM5C_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6069687.1"
                     /translation="MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVL
                     IVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVL
                     QEMFA"
     gene            complement(368..577)
                     /locus_tag="ACFM5C_002056"
     CDS             complement(368..577)
                     /locus_tag="ACFM5C_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="growth regulator"
                     /protein_id="HFC6069688.1"
                     /translation="MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCP
                     TVRRGWAEAAAMLVETEQEHFFFRN"
     gene            complement(700..1497)
                     /gene="truA"
                     /locus_tag="ACFM5C_002057"
     CDS             complement(700..1497)
                     /gene="truA"
                     /locus_tag="ACFM5C_002057"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFC6069689.1"
                     /translation="MDTAQKQRWAITLSYDGSRFYGWQKQAGGVPTVQTALETALAQI
                     AGEFVATTVAGRTDTGVHATAQVVHFDTTAVRPQQAWVRGVNAHLPEGIAVLHARQVA
                     PEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFS
                     SFRAAECQAKSPVKTIYRADLTQSAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLS
                     VEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPKIPEWL"
BASE COUNT          410 a          427 c          517 g          456 t
ORIGIN      
        1 aacacaatcc attcagacta ttcaatcagg caaacatctc ctgcaatact gcaaacagtt
       61 tttcagccgt actgttgtct aaattgccaa gatgcttgac caatccggct ttatccacag
      121 ccctaatctg ttcgggcaaa agcaaaccgt ctttatcctg aaagcggaca ttgacgcgga
      181 acggggcagg acggcttccg ctcgtcatgg gaacgatcag cacagtcttg agatagttgt
      241 gtatttcagg aggagagact acgacacaag gacgtgtctt tttgatttcg cttcctacgg
      301 tcgggtctaa ggagaccaga tagattccgc cgcgtactac catatccatt ctttatccgc
      361 ttcgttttca atttcggaaa aaaaaatgct cctgctcggt ttcgacaagc attgcggcag
      421 cttctgccca tcccctgcga acggtaggac agcttaaaat aatattgccc ttttcaactg
      481 taacagccaa gctgtctact gcccctattt gacccaataa tgatttgggc agaatcacgc
      541 cttgcgagtt tcccattttg cgtatgttga gaatcatata cgtaccctat ttaccagttt
      601 atgtaataac aatgttatta ccttgatgag gtagtgtcaa cattgaaaaa gattgcctga
      661 cagtttgtcc gatttcaaaa tctccgcgac aagaatgttt taaagccatt cggggatttt
      721 ggggcggatg atgccgtatg cctcgggata gtcgacgccg gtcaggtaaa gcccgtcggg
      781 catgaaggtt ggtggggctt tgaggcggct gcgttcttga atcagtgcgg cgaagccttc
      841 gacgctgagc ctgccgctgc cgacataaac gagcgcgccc atgatgttgc gtaccatatg
      901 gtgcaaaaag gcgttgccgt gcaaatcgag gcggacgagt cctgcgcttt gggtaaggtc
      961 ggcgcggtag atggttttga cgggggattt tgcctggcac tcggcggcgc ggaagctgga
     1021 gaagtcttgt tcgccgatca aataggcggc agcccgacgc atcggttcga tgtcgagttt
     1081 gaggtgtgtc cagcctgccc tgtttttgag caggggggaa cggacggggg cggattcgag
     1141 caggtagcgg tagtgtcgtc cgtatgcgtc aaatcgtgca tgaaattcgg gggcgacctg
     1201 tcgagcatgc aaaacggcaa ttccttcggg caggtgggca tttacgccgc gcacccatgc
     1261 ctgttgggga cggacggcag ttgtgtcaaa gtggacgact tgggcggtgg cgtgcacgcc
     1321 ggtatcggtt ctgccggcaa cggtggtggc gacaaattct cctgcgattt gggcgagtgc
     1381 ggtttccaat gccgtctgaa cggtcggtac gccgcccgcc tgtttctgcc agccgtaaaa
     1441 gcggctgccg tcataggata gggttattgc ccagcgttgt ttttgtgcgg tatccatcgg
     1501 atttgggatt cggataaatg ttcagactgc attgtatcgc agattttgca gggaaacggc
     1561 aaacgcccag ggcgagcggc gttgtttggg gagttggggg ggggatgcag ttgctacgaa
     1621 tcgctatcct gtgaattcac cctgtcagga gtgcccgaat cgtcattccc gcgcagtcgg
     1681 gaatctagga cgtaaaatct aaagaaacca ttttatagtg gattaacaaa aaccagtacg
     1741 gcgttgcctc gccttagctc aaagagaatg attctctaag gtgctgaagc acgagtgaat
     1801 cggttccgta
//
LOCUS       DAXHNP010000231         1808 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.231, whole genome shotgun sequence.
ACCESSION   DAXHNP010000231 DAXHNP010000000
VERSION     DAXHNP010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.231"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..215
                     /locus_tag="ACFM5C_002058"
     CDS             <1..215
                     /locus_tag="ACFM5C_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6069690.1"
                     /translation="MELETVVPPEEGEGEGEGGDGEIPEYLELHSEREDDISAPSQAE
                     PPPRNIKPLVFGLLIAFLGYLLGKIF"
     gene            250..1761
                     /gene="ubiB"
                     /locus_tag="ACFM5C_002059"
     CDS             250..1761
                     /gene="ubiB"
                     /locus_tag="ACFM5C_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HFC6069691.1"
                     /translation="MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSK
                     LKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLS
                     REQIEKSLGQSIEKLYAEFETEPVASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQ
                     DLSLMRFGAVWVERLFADGKRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFQNS
                     NMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFR
                     DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA
                     HIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQ
                     LVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPDWAQ
                     IIPSLPRKISALIDENRQQEMRDAYIHLVKVQQRQSLWLAVIAVVLLLILLLK"
BASE COUNT          400 a          488 c          494 g          426 t
ORIGIN      
        1 atatggagtt agaaacggtc gtgccgccgg aggaagggga gggcgaagga gaaggcgggg
       61 atggggaaat acccgaatat cttgaacttc atagcgaacg ggaagatgat atttccgcac
      121 cttcgcaagc cgaaccgccg ccccgcaata tcaaaccgct ggttttcggg ctgctgatag
      181 cctttttggg ctatctgctc ggtaagattt tttgattgtc cgataaatgc tgtattcggg
      241 attttatata tgaaatggtt gaaacgcctg acggttattg tcgggacttt ttaccgctat
      301 cggctggcag gtctgtgcgc ttcgctgatg ggtagcggtt ggatatgcgc tctgctgaaa
      361 atgatgccgc agtcgtccaa attgaaaaac gaaccgcctg ccgtccgtct gcgccttgcc
      421 ttggaaagcc tggggccgat tttcatcaag ttcgggcagg ttttgtccac acgccctgat
      481 ttgattccgc acgattacgc cgtcgaactg gcaaagctgc aagacaaagt gccgcctttt
      541 gacgcgcggc tttcgcgtga acaaatcgaa aaatcgttgg gtcagtccat cgaaaagctg
      601 tatgcggaat ttgaaaccga gcccgtcgcc agcgcgtcca tcgcccaagt acacaaagcc
      661 cgcctgcatt cgggcgaacg agtggctgtc aaagttttgc gccccaacct tttgcccctt
      721 atcgaacagg atttgtcgct gatgcgtttc ggcgcggttt gggtggagcg tctgtttgcc
      781 gacggcaagc gtctgaagcc gctcgaagtg gtggcggagt tcgacaaata cctgcacgac
      841 gagttggatt tgatgcgcga agccgccaat gccggacagc tcgggcgcaa tttccaaaac
      901 agcaatatgc tgattgtgcc caaggtgttt tacgactact gcaccagcga cgtgctgaca
      961 atcgaatgga tggacggcac gccggttgcc gacatcgcca aactcaaagc agacggcatc
     1021 gatttgcaca aactcgccga ttacggcgtg gaaatctttt tcacgcaggt cttccgcgac
     1081 ggctttttcc acgcggatat gcaccccggc aatattttgg ttgccgccga caaccgctac
     1141 atcgccctcg atttcggcat cgtcggcacg ctgaccgatt acgacaaacg ttatctcgcc
     1201 atcaatttcc tcgccttttt caaccgcgat taccggcgcg tcgccaccgc ccacatcgaa
     1261 tcgggctggg tgcctgccga cacgcgtgcg gaagaattgg aagccgccgt ccgcgccgtg
     1321 tgcgaaccgg tgttcaacaa accgatttcg cagatttcct tcggcttggt gctgatgcgc
     1381 ctgtttgaag tcagccgccg cttcaatgtc gaaatccaac cgcagcttgt gctgctgcaa
     1441 aaaacgctgc tcaacatcga aggcttgggc cgccagctcg atcccgattt ggacttgtgg
     1501 aaaaccgcca aaccgttttt ggtgaaatgg atgaacgggc aggtcggccc taaagccctt
     1561 tggcgcaacc tcaaaaacga agcccccgac tgggcgcaaa tcatcccttc attgccgcgc
     1621 aaaatcagtg cgttgattga tgaaaaccgc cagcaggaaa tgcgtgatgc ctatatccat
     1681 ttggtcaaag tgcagcagcg gcaaagcctg tggctggctg tgattgcggt tgttttgctg
     1741 ctgattttgc ttttgaaata ggctttgtcc gaatcatcgc ccgactccgc ccgtttataa
     1801 ggaaatcg
//
LOCUS       DAXHNP010000232         1794 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.232, whole genome shotgun sequence.
ACCESSION   DAXHNP010000232 DAXHNP010000000
VERSION     DAXHNP010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.232"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..519
                     /locus_tag="ACFM5C_002060"
     CDS             <1..519
                     /locus_tag="ACFM5C_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069692.1"
                     /translation="PVGALSKAKAAKQAAPKETINNLANLAKAEQQILFRIAQRDTQL
                     DAWKTGFNNRVRKGAGLLDASNIPITINGKTIKPVQAISLKGAPVYSGVSEQEIFALY
                     RQMTGQNPNFRVLPDGRLANGIISTGEWAGTKIALRNFSKTENSTQARWTLDLQNPPS
                     FIKGTKLELKFQ"
     gene            538..912
                     /locus_tag="ACFM5C_002061"
     CDS             538..912
                     /locus_tag="ACFM5C_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6069693.1"
                     /translation="MDEKQKIKILDFQIDLSSIFNSYKNQMGINIQDKNLKNNFCSFM
                     EELLNDGSIRLHDYTDGIGIPLTGTSKEQVQKLKDIWPTLEDAQAIWPEDPWYYLEWL
                     WWDIACPIDLADLPNIDIYEQA"
     gene            1271..>1794
                     /locus_tag="ACFM5C_002062"
     CDS             1271..>1794
                     /locus_tag="ACFM5C_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HFC6069694.1"
                     /translation="MLKTPPTLAAELSGKTGVSISAPYANENSRILLSTTDISSENGK
                     IKIQSYGDQYYYARQSELYTFERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATAFDAPKGSINIEAGRKLTLYAVEELNYDKLDSQKRRRFLGISYS
                     KAHDTTTQVMKTALP"
BASE COUNT          588 a          400 c          376 g          430 t
ORIGIN      
        1 cctgtggggg cgttgtcgaa agcgaaggcg gccaagcaag ctgctcctaa agaaacaata
       61 aacaatttgg caaatttagc caaagcagaa cagcagattt tattccgtat tgcccaacgc
      121 gatacgcaac tggatgcatg gaagacggga tttaacaata gagtaaggaa aggagcaggc
      181 ttgcttgatg caagtaatat tccgataacc attaacggaa aaaccatcaa acctgtacaa
      241 gccataagct taaagggagc acccgtttac agcggcgtaa gcgaacagga gatttttgcg
      301 ctttatcggc agatgactgg ccagaatccg aattttagag ttttgcctga cggaagatta
      361 gcaaatggca ttatcagtac tggagaatgg gcaggaacaa aaattgcatt aagaaatttt
      421 tcaaaaacag agaattcaac tcaagcacga tggacattag atttgcagaa tcctccatca
      481 tttattaaag gtactaaatt ggagcttaaa ttccaataat ttacaaagga ttttaccgtg
      541 gatgagaaac aaaaaattaa gattcttgat tttcaaatcg atttatcctc aatttttaac
      601 tcttataaaa atcaaatggg tattaatatt caagataaaa acttaaaaaa caatttctgt
      661 tcttttatgg aagaactgtt aaatgacggt tcaatccgtt tacatgatta taccgacggt
      721 atcggaattc ctctaactgg aacttcaaaa gaacaagtgc agaaattgaa agacatatgg
      781 cctactttgg aagatgccca agcaatatgg cctgaagacc cttggtatta cttagaatgg
      841 ctttggtggg atattgcgtg tccaatagat ttggccgatt tgccgaatat tgatatttat
      901 gagcaagcgt aggtatggtt agccgccttt agcggcgtaa ccgtacgcat atcagcaaac
      961 tttataaaat aacaaggccg tctgaaatct gtttttcaac tttttcagac ggccttgcaa
     1021 cttggcattt cattcgtacg gttacgccgc taaaggcggc taaccgtacc tacgagctct
     1081 gataaaaatg atttatggaa gcaagctgta gcctgcatga aacctaaaat ccatgcgtaa
     1141 ggtgtgtgct tcagcgcgca cgcgttccat gatttacggc tcaatgccgt ctgaaaagct
     1201 caattttttc agacggcatt tgttatgcaa gtaaatattc agattcccta tatactgccc
     1261 agacgcgtgc gtgctgaaga cacctcctac gcttgctgca gaactttcgg gtaaaaccgg
     1321 tgtgagcatt agcgcaccgt atgccaatga gaacagtcgc atcctgctca gcaccacgga
     1381 tatcagttcg gaaaacggca aaatcaaaat tcaatcttac ggtgaccaat attactatgc
     1441 gagacagagc gaactctata cctttgaacg ccgcagctac aaaaccggca aatggtacaa
     1501 ccgcaaacac attaccgaag tcaaagaaca caaaaacgcc aagcccgacg cagtaaacct
     1561 cagcgcatcc caaggcatcg acatcaaatc tggtggcagc atcgacgcct acgccaccgc
     1621 attcgatgcc cccaaaggca gcattaacat cgaagccggg cggaaattga cactctatgc
     1681 cgtagaagag ctcaactacg acaaactaga cagccaaaaa aggcgcagat ttctcggcat
     1741 cagctacagc aaagcacacg acaccaccac ccaagtcatg aaaaccgcgc tgcc
//
LOCUS       DAXHNP010000233         1790 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.233, whole genome shotgun sequence.
ACCESSION   DAXHNP010000233 DAXHNP010000000
VERSION     DAXHNP010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.233"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(148..804)
                     /locus_tag="ACFM5C_002063"
     CDS             complement(148..804)
                     /locus_tag="ACFM5C_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HFC6069695.1"
                     /translation="MKNKTKVWDFPTRLFHWLLAASLPFMWYSAKTGGDMLQWHTRVG
                     LFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIREYMKNGIPEHVQPGHNPLGALMVV
                     ALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAIH
                     IAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKTALAAALSVAALAAAAILLLS
                     "
     gene            869..1759
                     /locus_tag="ACFM5C_002064"
     CDS             869..1759
                     /locus_tag="ACFM5C_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HFC6069696.1"
                     /translation="MFPVFHLSGESRRRMLQAASRFPYVFKARAEDSHKGTFGTLAVV
                     GGSAGMSGAPVLAASAAMYLGCGKVWAGFNQDALPFAVIAGFPEIMLDTADGLTKRQG
                     INAWMVGCGLGTDKAAVGTLAGILAEHTDKPVLLDADALNILSTDAETRNLARGCKNL
                     ILTPHPAEAARLLGTTVAQVQADRTAAVRKIGAIFGATVVLKGHKTLVAASDTEIYVN
                     ESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGAWLHGAAADVIKESAGIAAGL
                     LAGEIAPAARWLRNRITKSM"
BASE COUNT          403 a          421 c          587 g          379 t
ORIGIN      
        1 ccttgtcctg atttttgtta atccactata aaacggtttg ggacggaaaa acggcctgaa
       61 gccgtttcgg gcattcagac cgtttgcgcg gagagaggat gccgtccgaa gggcgaaaag
      121 ggcttcagac ggcattgatg tcgggtttca ggacaggagc aggatggcgg ctgcggcaag
      181 cgcggcaacc gataatgcgg cggcaagcgc ggttttgccg gcaaagcgga ttgaggtttt
      241 gccttcgatg tatttgaagc cggttatcat cgggaggacg aggtttttct ttttgaacac
      301 gcggtatgcg gcgacggcgg cgatatgaat ggcggaaaaa acggcgagca gcttgaaaaa
      361 gttgaggtgg attttccgca taaggctgcc cgtatgctcg gaaaccaaat ggttgaggta
      421 gccgttggtg ctgaaggtgt tttcatcggc ggcaaaaagc cctgtgccga cttgaaatga
      481 gacggcggcc aaaagcgcga cgaccatcag tgcgcccaag gggttgtgtc cgggttggac
      541 gtgttcggga ataccgtttt tcatatactc tctgataccc gaccatccgc ggacgaaacg
      601 ggagaaacgg gcggtatcgc tgccccaaat gccccagcag aggcggaata cgagcaggaa
      661 aaggataaac agcccgacgc gcgtgtgcca ttgcagcata tcgccgccgg ttttcgcgct
      721 ataccacata aagggtaggg atgcggcaag cagccagtgg aaaaggcggg tggggaagtc
      781 ccagactttg gttttgtttt tcataattgg tttccggcgg tagaatcggt ttgttttcga
      841 gccttaattt taaccgattg gaggggaaat gtttcccgtt ttccatcttt caggcgaaag
      901 ccgccgccgg atgcttcagg cggcatcgcg ttttccctat gttttcaaag cccgtgcgga
      961 agattcgcac aaagggactt tcggcacgct cgccgtagtc ggcggatcgg cagggatgag
     1021 cggcgcgccc gtattggcgg catcggcggc gatgtatctc ggctgcggca aggtgtgggc
     1081 gggtttcaat caggatgcgc ttccgtttgc cgtcattgcc ggttttcccg aaattatgtt
     1141 ggacacggca gacggtttga ccaagcgtca aggcataaac gcttggatgg taggttgcgg
     1201 cctgggtacg gataaagcgg cggtcggaac gcttgccgga attttggcgg aacacacgga
     1261 caagcccgtc cttttggatg cggacgcgct gaacatatta tcaaccgatg ccgaaacccg
     1321 aaatctggcg cgcgggtgta aaaacctgat tttaacgcca caccccgccg aagccgcgcg
     1381 cctgcttgga acgacggttg cacaggttca ggcggatcgg acggcggcag tgaggaagat
     1441 aggggcaatt ttcggcgcaa ccgtggtttt aaaggggcac aaaacattgg ttgctgcgtc
     1501 cgatacggaa atctatgtca acgaaagcgg caacgcggga ttggcaacgg cgggcagtgg
     1561 cgacgtattg ggcggcatca tcggcagtct gctcgcacag ggcgtgccgg tttttgaagc
     1621 cgcctgcgcg ggcgcgtggc tgcacggcgc ggcggcggat gtcataaaag aatcggcagg
     1681 cattgcggca gggctgttgg caggggaaat cgctccggcg gcaaggtggc tgcgcaaccg
     1741 gataactaaa agtatgtaag aagatatagt ggattaacaa aaaccagtac
//
LOCUS       DAXHNP010000234         1737 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.234, whole genome shotgun sequence.
ACCESSION   DAXHNP010000234 DAXHNP010000000
VERSION     DAXHNP010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.234"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            97..1470
                     /locus_tag="ACFM5C_002065"
     CDS             97..1470
                     /locus_tag="ACFM5C_002065"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6069697.1"
                     /translation="MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLL
                     AAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSY
                     IKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLD
                     EADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQN
                     TTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSA
                     QAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYV
                     HRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKP
                     EKTEMREPRQRNRYESARAQREKNTRPETTANDAGAACGKIAGRSRRSRREHRTCALL
                     QPRYGVK"
     gene            1650..>1737
                     /locus_tag="ACFM5C_002066"
     CDS             1650..>1737
                     /locus_tag="ACFM5C_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009118462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HFC6069698.1"
                     /translation="MSTQFDVAVIGAGPAGSVASALLRKKGYS"
BASE COUNT          443 a          565 c          411 g          318 t
ORIGIN      
        1 gccgccttgt cctgattttt gttaatccac tatatttccc cgtcctatcg gtttcccgtt
       61 tcagacgaca taaggtctga aagaaagact acaattatga gtaatccatt ttcctcttta
      121 ggtttgggta cggaactcgt ttccgcactg accgcgcaag gttacgaaaa cccgacgccc
      181 atccaagccg ccgccattcc caaagcactc gccggtcatg atttgctagc cgccgcgcaa
      241 accggcacag gcaaaaccgc cgcctttatg ctgcccagtc tggaacgcct caaacgttac
      301 gccaccgcca gcacctcgcc cgcgatgcac cccgtgcgta tgctcgtcct tacccccacg
      361 cgcgaacttg ccgaccaaat cgaccaaaac gtgcagtcct acatcaaaaa cctgccgctt
      421 cgccacaccg tcttgttcgg cggtatgaat atggacaaac agaccgccga tttgcgtgcc
      481 ggctgcgaaa tcgtcgtcgc caccgtcgga cggctgctcg accacgtcaa acaaaaaaac
      541 atcagtttga acaaagtcga aatcgtcgtt ctggacgaag cagaccgcat gttggatatg
      601 gggtttatcg acgacatccg caaaatcatg cagatgctgc ccaaacaacg ccaaaccctg
      661 ctcttttccg ctaccttctc cgcaccgata cgcaaactgg cgcaagactt catgaacgcg
      721 cccgaaaccg tcgaagtcgc cgcgcaaaac accaccaacg ccaacgtcga acaacacatc
      781 atcgccgtcg ataccattca gaagcgcaac ctgctcgaac ggctgattgt cgatttgcat
      841 atgaaccagg tcatcgtgtt ctgcaaaacc aaacaaagcg tcgaccgcgt aacgcgcgaa
      901 ctggtgcgcc gcaacctgtc cgcacaggcg atacacggcg accgttccca acaaagccgg
      961 ctcgaaacac tcaacgcctt caaagacggc agcctgcgcg tcctcgtcgc caccgacatc
     1021 gccgcgcgcg ggctggacat tgccgaactg cccttcgtca tcaattacga aatgcccgcc
     1081 cagcccgaag actacgtcca ccgcatcggg cgcacggggc gcgcgggcgc ggacggcgtg
     1141 gcgatttccc tgatggacga atccgaacag aaaatgtttg aatccattaa agagctgacc
     1201 ggcaacaagc tgctcatcga gcgcatcgag ggcttcgagc cgcaatggtg ggaacagggc
     1261 ggcgcaaaac cggaaaaaac cgaaatgcgc gaaccgagac aacgcaaccg ctacgaatcc
     1321 gccagggctc agcgcgaaaa aaatacccga ccggaaacca cggcaaacga tgcgggcgcg
     1381 gcttgcggaa aaattgccgg acgcagccgc cgaagccgtc gggaacaccg gacgtgcgcc
     1441 ctgctccaac cgcgttacgg cgtaaaataa ccctgaaaat caaatgccgt ctgaacattt
     1501 cccgtttcag acggcatttt tcaaaccgga ctgacgcatt gggagcaacc gcccgcaccg
     1561 gataaatttc ttccgcaaac agtttcagac ggcatttgct gcctgtacaa tatcatttcc
     1621 ttttccactc aaaccatcag gatttcccaa tgtccaccca attcgatgtc gccgtaatcg
     1681 gcgcaggtcc ggcaggctcg gtcgcatccg ccctgctccg caaaaaaggt tatagtg
//
LOCUS       DAXHNP010000235         1632 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.235, whole genome shotgun sequence.
ACCESSION   DAXHNP010000235 DAXHNP010000000
VERSION     DAXHNP010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.235"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            37..1379
                     /locus_tag="ACFM5C_002067"
                     /pseudo
     CDS             37..1379
                     /locus_tag="ACFM5C_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
     gene            1424..>1632
                     /locus_tag="ACFM5C_002068"
     CDS             1424..>1632
                     /locus_tag="ACFM5C_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069699.1"
                     /translation="MNIQLQGHIVGVKKFNGQIEGRSFDYCRLIVATPLDSSQGNALG
                     SSTTEYDFGGSANFEQFRNAQFPIEA"
BASE COUNT          484 a          391 c          383 g          374 t
ORIGIN      
        1 agggcttttt tttgcccgtt tttgaggatt cgcaccatgg aagataagca agggatgaca
       61 aaggcggttg ccggcgtgat gacggacgcg ccgacggacg gcaggaagcc ggcaaccgct
      121 tcaaaccttc cccccttatc taacgggggg gtacagaaac cgaaacggca ggcagggttc
      181 aggaagtctt cgaatgttac gaaacgtaca taacggacgg taaaggaaac ctgttaggcg
      241 ttcctcttcg gcgcggtgta tcagattcgg ctttcattga tcaaattagc ttttcatttc
      301 atgaaaaaac ctttttcgat aaatacggtg ttagagtcag tctgttagaa gatgaagatt
      361 tcattcacgc cgcgtccatg ctcgccgaag aagttttcgg tttcggtctc tacaaagagt
      421 ccaaaggctc gggcggtcgt ttttatgagc gctgttggtt gatgggttcg gaagacgtcc
      481 tatacggtcg cgtccatttt ggcggacaaa acaataccat tcttttcgaa ctgaccggca
      541 ccggttgcgg cgtcgcaaaa gaaggctggg aatcacgact tttcgcattc ctgactaatg
      601 caatccgccc aaaaatcaca cgcgttgaca tcgcaaaaga ctttttcaac ggcgaataca
      661 gcccgaacca agcccgtgaa gaccgaaata aaggtatgtt tacctgtcat cacgtcaaac
      721 caaaaggcga atgtttgggg tcagattggg aagaagacga tgaagccaaa atgaccaaag
      781 gcaagaccta tggtatcggc tcccgtgaat cgtccaaata tgtccgcgtc tatgaaaaag
      841 gcaagcagtt gggcgataaa acaagcacat ggacgcgatt tgaaattgaa ttcaaagcaa
      901 aagatatcgt tatccctttc gaagttttgc agaatccggg cgaatatttc ggcggcgcat
      961 atccgatttg cgaacgattc gtccaaaagg caacgcgcat acacgcggtt aaggaagata
     1021 aggtcatttc agccgaccgc taccttgaat gggtaaaaaa acagttcgga cgtgcggcaa
     1081 acggtctgaa attcattttt cccgaattgg acaaagccaa actgtttgaa ctgattgagc
     1141 cgagtcatca caagctgccc aagtctttgg ctcccgaagc ctacgactgc gcctttttga
     1201 aagctcaagc cattcatgaa cagcccgcat tcaaaccgta caatgaccct tactatatgt
     1261 acgaatatta cgagaatctt gaaaaacagc ttgaacagca aaaacacgtc aacaatgaag
     1321 aaagctataa caacttcatt tacgacaaat tcgcaagact accgatttca tgggcttaaa
     1381 gtgtctgccc gaaagacgtt taatcacaca aggaaaccaa aaaatgaaca tccaacttca
     1441 aggccacatc gtcggcgtta aaaaattcaa cggacaaatc gaaggcagga gcttcgacta
     1501 ttgccgcctg attgtcgcca cacccttaga cagctcccaa ggcaacgcat tgggcagctc
     1561 tactactgaa tacgatttcg gcggctctgc caatttcgag cagttccgaa acgcccaatt
     1621 tccgatcgaa gc
//
LOCUS       DAXHNP010000236         1564 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.236, whole genome shotgun sequence.
ACCESSION   DAXHNP010000236 DAXHNP010000000
VERSION     DAXHNP010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.236"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..269
                     /locus_tag="ACFM5C_002069"
     CDS             <1..269
                     /locus_tag="ACFM5C_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6069700.1"
                     /translation="KVEVANGVITATMLSTGVNKEIQGRKLSLWAKRQNGSVKWFCGQ
                     PVTRNNAKANAANADDVAKTGTDSEKINTKHLPSTAPTRKSTPN"
     gene            336..722
                     /locus_tag="ACFM5C_002070"
                     /pseudo
     CDS             336..722
                     /locus_tag="ACFM5C_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            1296..>1564
                     /locus_tag="ACFM5C_002071"
     CDS             1296..>1564
                     /locus_tag="ACFM5C_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6069701.1"
                     /translation="MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAI
                     LLAEGQKSAVTEYYLNHGEWPSNNTSAGVASASDIKGKYVKEVEV"
BASE COUNT          512 a          446 c          307 g          299 t
ORIGIN      
        1 agaaagttga agtcgcaaac ggcgtcatta ccgccacaat gctttcaacc ggcgtaaaca
       61 aagaaatcca aggcagaaaa ctctccctgt gggccaagcg tcaaaacggt tcggtaaaat
      121 ggttctgcgg acagccggtt acgcgcaaca acgccaaagc caacgccgcc aacgccgacg
      181 acgtcgccaa gaccggtacc gacagcgaaa aaatcaacac caagcacctg ccgtcaacag
      241 caccgacaag aaaatcgaca ccaaactaga gaaacctttt tacccgataa gtttccgtac
      301 cgacgaggct ggattcccgc ctgcgcggga atgacgaagc cattcttttg gctgaaggtc
      361 aaaaatcagc cgtcacagag tattacctga atcacggcga atggcccggc aacaacactt
      421 ctgccggcgt ggcatccacc ccctccgaca tcaaaggcaa atatgttcag aaagttgaag
      481 tcgcaaaagg cgtcattacc gcccaaatgg cttcaagcaa cgtaaacaat gaaatcaaag
      541 gcaaaaaact ctccctgtgg gccaagcgtc aagacggttc ggtaaaatgg ttctgcggac
      601 agccggttac gcgcaccggc accaccacca acaacgacga agtcaccgcc gccagcgaca
      661 agcagatcga caccaagcac ctgccgtcaa cagcatcgac aagaaaatcg acaccaaact
      721 agagaaacct ttttacccga taagtttccg taccgacaag gctggattcc cgcctgcgcg
      781 ggaatgacga agccatccgc acggaaacct gccgcgatga tttaactgcc gtttgcacag
      841 gaacaccacg cgccgatttc aatcactttc caagaaaacg gaaattttta aaaattaaat
      901 ttaaaatttc ccacccaacc caccctatgc taccgcgcaa attcaaaaat ctcaaattcc
      961 gacccaatca acacacccga tgccccatgc caatagagat accccacgcc aataaaaaag
     1021 tgccgaaaat cggcactaaa actgacaatt ttcggcactg ctgacaaaaa acggtaatcc
     1081 cctgcttcct caaaccacac ccaaacgaaa gaaaatgtaa aataaaaaca accatataaa
     1141 gataaacgca taaattttca cctcaaaaca caaacttgat accaatcttg ctttataata
     1201 cacaggtatc gcaacaaaat accgatggtc aaatacattg cataatgccg atggcgtaag
     1261 cttgaggcat ttcctttcca attaggagta attttatgaa cacccttcaa aaaggtttta
     1321 cccttatcga gctgatgatt gtgattgcca tcgtcggcat tttggcggca gtcgcccttc
     1381 ctgcttatca agactacaca gcccgcgcac aagtttccga agccattctt ttggctgaag
     1441 gtcaaaaatc agccgtcacc gagtattacc tgaatcacgg cgaatggccc agcaataaca
     1501 cttctgccgg cgtggcatcc gcctccgaca tcaaaggcaa atatgttaag gaagttgaag
     1561 tcaa
//
LOCUS       DAXHNP010000237         1554 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.237, whole genome shotgun sequence.
ACCESSION   DAXHNP010000237 DAXHNP010000000
VERSION     DAXHNP010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.237"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>1554
                     /locus_tag="ACFM5C_002072"
     CDS             <1..>1554
                     /locus_tag="ACFM5C_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6069702.1"
                     /translation="YIADIPKGNLKTEIEKLAKQPEYAYLKQLQVAKNINWNQVQLAY
                     DKWDYKQEGMTPAAAAVVVIVVTVLTYGALSAPAAAGTAGAAGAGAGGAAAGTAAGTG
                     VAAGTAATTGVAAGTSAAAITTAAGKAALASLASQAAVSLINNKGDINHTLKELGKSS
                     TVRQAATAAVTAGVLQGISGLNTQAAEAVSKHFHSPAAGKLTANLINSTAAASVHTAI
                     NGGSLKDNLGDAALGAIVSTVHGEVASKIKFNLSEDYIAHKIAHAVAGCASAVANKGK
                     CRDGAIGAAVGEMVGETLLDGRDVGKLSPQERQKVIAYSQIIAGSVVALVKGDVNTAA
                     NAATVAVENNSLLARRRVNIRWTPRQELEHEYAILEIQAITNQIRRLDPKFNGIAILR
                     TPGEPWTRHDVQTYRQYYNQLRESRGFAVDPIYRIRINNGNEFNRIMSSKYPYNELYV
                     ANPKSATGYFRVDSYNPATEEIISRKFTQFSQIQESTGIGYIKEAVRKYSPGAVISNV
                     PSTPTTIRGR"
BASE COUNT          476 a          393 c          398 g          287 t
ORIGIN      
        1 tatatcgccg acatccccaa aggcaacctc aaaaccgaaa tcgaaaaact cgccaaacag
       61 cccgagtatg cttatttaaa acagcttcaa gttgcgaaaa acatcaactg gaatcaggtg
      121 cagcttgctt acgataaatg ggactacaaa caggagggca tgacacccgc agcagcagct
      181 gtcgtcgtta tcgtcgtaac tgtattgacc tacggcgcac tgtccgcccc ggcagccgcc
      241 ggaacggcgg gcgcggcagg cgcaggagcg ggaggagccg cagcaggaac ggcagccgga
      301 actggagtag cagcaggaac ggcagccaca accggagtag cagcaggcac atcagctgca
      361 gctatcacca cagccgcagg caaagccgca ctggccagtc tcgccagcca agccgcagtt
      421 tccctcatca acaacaaagg agacataaac cataccctga aagaactggg caaaagcagc
      481 accgtcagac aggccgccac cgccgccgta accgcaggcg tactgcaggg cataagcggg
      541 ctgaacaccc aagcagccga agccgtcagc aaacattttc acagtcccgc agcaggcaaa
      601 ctgaccgcta acctgatcaa cagcaccgct gccgcaagtg tccataccgc catcaacggc
      661 ggcagcctaa aagacaactt gggcgatgcc gcactgggtg cgatagtcag taccgtacac
      721 ggagaagtag cgagcaaaat caaatttaat ctcagcgaag actacattgc ccacaagata
      781 gcccatgccg tagcaggctg tgcatcggcg gtagcaaata aaggcaaatg tcgggacggc
      841 gcaatcggcg cggcagtcgg cgagatggtg ggagaaaccc tgttggacgg acgcgatgta
      901 ggcaaactgt caccccaaga acgccaaaaa gtcatagcct actcgcagat tatcgcaggc
      961 agcgtagtgg cattggttaa aggggatgtg aatacggcgg cgaatgcggc tactgtggca
     1021 gtggagaata atagtctttt agctcgcagg agggtaaata tacgttggac tccgcgacaa
     1081 gaattggaac atgaatatgc cattcttgaa atccaggcca ttaccaatca aatccgaagg
     1141 ctggatccga aatttaacgg gattgctatt ctgaggactc ctggagagcc gtggacaaga
     1201 catgatgtac aaacatacag gcaatattat aatcaattaa gggaatccag aggctttgct
     1261 gttgacccaa tttatagaat caggataaac aacggcaatg aatttaaccg tatcatgtca
     1321 tcaaaatacc cttataatga gctttatgta gccaatccta aatcggcgac ggggtatttt
     1381 agggtagatt cgtataatcc tgcgacagag gaaattattt caagaaaatt tacccaattt
     1441 tctcaaatcc aagaaagtac ggggattggt tatatcaagg aggctgttag aaaatatagc
     1501 cctggtgctg tcatttccaa tgttccaagt acacctacta cgataagagg aaga
//
LOCUS       DAXHNP010000238         1528 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.238, whole genome shotgun sequence.
ACCESSION   DAXHNP010000238 DAXHNP010000000
VERSION     DAXHNP010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.238"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(245..1168)
                     /gene="lpxC"
                     /locus_tag="ACFM5C_002073"
     CDS             complement(245..1168)
                     /gene="lpxC"
                     /locus_tag="ACFM5C_002073"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFC6069703.1"
                     /translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
                     GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
                     PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
                     EFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
                     IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
                     LADETAYDRVEFADSDDLPDAFHELNIRTCG"
BASE COUNT          402 a          357 c          381 g          388 t
ORIGIN      
        1 attcccactt tcgtgggaat gacgggatgt aggtttccgt gcggatggat tcgtcattcc
       61 cgcgcaggcg ggaatctaga ccttagaaca acagtaatat tcaaagatta tctgaaagtc
      121 cgagattctg gattcccact ttcgtgggaa tgacgggatt ttaggtttct gattttggtt
      181 ttctgttttt gtaggaatga tgaaatttta agttttagga atttaccgga aaaaatagaa
      241 agcgttatcc acaagttctg atgttcagct cgtgaaatgc gtcgggcaaa tcatcgctgt
      301 cggcaaattc cacccggtcg taagccgttt cgtctgccaa aaccgcgcgc aagagtgcgt
      361 tgttgatggc gtgtcccgat ttgtagcctt caaacgcgcc gacaatcgga tgtccgacga
      421 tatacaaatc accgatggca tcaaggattt tgtggcgcac aaactcatcg ggatagcgca
      481 agccttcagg attcaggaca tccgtgtcgt caatcacgat ggcgttgttc aaattgccgc
      541 ccaaacccag attgtgggcg cgcatcattt ccacttcgtg cataaagccg aaagtgcgcg
      601 cgcgcgcgat ttcgtcgatg taggatttgc cggcgaaatc aatttcaaaa gtgggcgagc
      661 tgcggttgaa aaccggatgg tcgaattcga tggtcagcgt taccttaaag ccgtcatacg
      721 gcgtaaagcg cacccatttg cccgcttctt tgatttcgac aggcttgagg attttcaaaa
      781 aacgcttttg cgccttttga tcgaccacgc ccgcatcttg caaaaggtaa ataaacggca
      841 ggctggagcc gtccataatc gggatttcgg gcgcgttcag ctcaatcagt gcgttgtcga
      901 taccgtaggc ggacagcgcg gacataatgt gttcgatcgt gccgacgcgc acgcctttgt
      961 cggtaacgat ggtggatgaa aggcgggtat cgttgatcaa ataaggggtc agcttgattt
     1021 gttcgcccat ctcgccgtcc aaatcggtgc gtcggaagga aatcccgctg ttttcaggcg
     1081 cggggtgcag ggtcagtgcg acgcgttcgc ccgaatgcag cccgactccg gtaacgctga
     1141 tggatttcgc caaagttctt tgcagcataa accgcttcct tatcaatggg gtaagttggg
     1201 gaatgatacg ataaaaccgg aaaaacaagc tatgtttttc catagtattt gccaatgtat
     1261 ccgttttcaa tacgtaagcc gcataaaaat gtatagtgga ttaacaaaaa tcaagacaag
     1321 gcgacgaagc cgcccccctc ctgaaaaacg caaaaaatgc cgtccgaaaa cctttcggac
     1381 ggcattttcg cgtaaaccgt cattcccaca aggacaaaaa accaaaaaca gaaacctaaa
     1441 attcgtcatt cccgcaaaag cgggaatcta gttcgttgag tttcagttat ttagaataaa
     1501 ttttgaaact taaatcccgt cattccca
//
LOCUS       DAXHNP010000239         1520 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.239, whole genome shotgun sequence.
ACCESSION   DAXHNP010000239 DAXHNP010000000
VERSION     DAXHNP010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.239"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            30..1421
                     /locus_tag="ACFM5C_002074"
     CDS             30..1421
                     /locus_tag="ACFM5C_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpP1/FadL family transporter"
                     /protein_id="HFC6069704.1"
                     /translation="MTPSALKKTVLLLGTAFAAASAQASGYHFGTQSVNAQSTANAAA
                     AEAADASTIFYNPAGLTKLDSSQISVNANIVFPSIRYEADSATDFTGIPVQGSKSGKI
                     TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
                     AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIMEKAKALKETPPNPTKAAQIKADGHA
                     DVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWSTML
                     AANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFEKEK
                     TVVKGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMNSLP
                     DGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTTYRTAKASGNDVDSKGASSARFKNH
                     ADIIGLQYTYKFK"
BASE COUNT          408 a          489 c          356 g          267 t
ORIGIN      
        1 ccaccgtccg cctttttacg gaaaccgaaa tgaccccttc cgcactgaaa aaaaccgtcc
       61 tgctgctcgg cactgccttt gccgccgcat ccgcacaagc ctccggctac cacttcggca
      121 cacagtcggt caacgcgcaa agcacggcga atgccgccgc cgcagaagcc gccgacgcat
      181 cgaccatctt ctacaacccc gccggcctga ccaaactcga cagcagccag atttccgtca
      241 acgccaatat cgtatttcca agcatccgtt atgaagcgga ttccgccacc gactttaccg
      301 gcattcccgt ccaaggttcg aaaagcggca aaatcaccaa aaccacggtt gcgccccaca
      361 tctacggcgc atacaaagtc aacgacaatc tgaccgtggg cttgggcgtg tacgtcccct
      421 tcggttctgc caccgaatac gaaaaagatt ccgtgttgcg ccacaacatc aacaaactcg
      481 gtctgaccag catcgccgtc gaacctgtcg ccgcgtggaa actcaacgac cgccattcct
      541 tcggcgcagg catcatcgcc caacatactt ccgccgagct gcgcaaatat gccgactggg
      601 ggattatgga aaaagcgaaa gcactaaaag aaacaccccc caatccaact aaagccgccc
      661 aaatcaaagc cgacggacac gccgatgtca aaggcagcga ttggggcttc ggctaccaac
      721 tggcgtggat gtgggacatc aacgaccgtg cgcgcgtggg cgtgaactac cgttccaaag
      781 tctcgcacac gctcaaaggc gatgccgaat gggcggcaga cggcgcggcg gcgaaagcaa
      841 tgtggagtac gatgcttgca gcaaacggct acacggcgaa tgaaaaagcc cgcgttaaaa
      901 tcgttacgcc tgagtctttg tccgtacacg gtatgtacaa agtgtccgat aaagccgacc
      961 tgttcggcga cgtaacttgg acgcgccaca gccgcttcga taaggcggaa ctggtttttg
     1021 aaaaagaaaa aaccgtcgtc aaaggcaaat ccgaccgcac caccatcacc cccaactggc
     1081 gcaacaccta caaagtcggc ttcggcggtt cttatcaaat cagcgaaccg ctgcaactgc
     1141 gcgccggcat cgcttttgac aaatcgcccg tccgcaacgc cgactaccgc atgaacagcc
     1201 tgcccgacgg caaccgcatc tggttctccg ccggtatgaa ataccatatc ggtaaaaacc
     1261 acgtcgtcga tgccgcctac acccacatcc acatcaacga caccacctac cgcacggcga
     1321 aggcaagcgg caacgatgtg gacagcaaag gcgcgtcttc cgcacgtttc aaaaaccacg
     1381 ccgacatcat cggcctgcaa tacacctaca aattcaaata aacggcccgc cgtttgattg
     1441 tagaaatgcc gtctgaaaca gatttccgtt tcagacggca ttgttttagg cgcgatttat
     1501 agtggattaa caaaaatcag
//
LOCUS       DAXHNP010000240         1498 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.240, whole genome shotgun sequence.
ACCESSION   DAXHNP010000240 DAXHNP010000000
VERSION     DAXHNP010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.240"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..372
                     /locus_tag="ACFM5C_002075"
     CDS             <1..372
                     /locus_tag="ACFM5C_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HFC6069705.1"
                     /translation="RLRRLVLIFVNPLYIIATTVPAQQTFLDAAELMQWSRETEWLGL
                     NVIAHRNFGKQHAQVEFEAYFRDGQHRSAHHELSGFVNIGGQWYFIDPTVPHPAMKQP
                     CICGSGKKFKACCGKYLKPVA"
     gene            complement(663..1457)
                     /locus_tag="ACFM5C_002076"
     CDS             complement(663..1457)
                     /locus_tag="ACFM5C_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6069706.1"
                     /translation="MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQT
                     AFAAALPLLIDSPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAV
                     SVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIK
                     YLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIF
                     EEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVGWIRENQ"
BASE COUNT          393 a          459 c          322 g          324 t
ORIGIN      
        1 cggcttcgtc gccttgtcct gatttttgtt aatccactat acatcatcgc tactaccgtt
       61 ccggcacaac aaacattcct cgatgccgcc gaactgatgc agtggagcag agaaaccgaa
      121 tggctgggct tgaatgtcat cgcacaccgc aacttcggca aacagcacgc ccaagtcgaa
      181 tttgaagcct acttccgaga cggacaacac cgatctgcgc atcacgaact gtccggcttc
      241 gtcaacatcg gcggacaatg gtattttatc gatcccaccg ttccgcatcc tgcgatgaaa
      301 caaccctgca tttgcggatc gggcaaaaaa ttcaaagcct gctgcggcaa atatctgaaa
      361 cctgtcgcat aaaaatgccg tctgaacgtt cagacggcat ttttaacgcg caaaaaaaac
      421 cattcatacc aagggtaagt atgaatggtc aatacattgc gggaaaacgt cttacttgct
      481 gcactgccga aaagggagaa acggcagcgg taatcagcgg aaaggattgt acccgtataa
      541 atgttaagta acgttaatta tgaaaatata accgatgttt cggcacacaa tccgcaactg
      601 tccggcgcag gcggcggcaa agcctgttta ttcaaaccct tattcctgcc catctgtcca
      661 ccttactggt tttcccgtat ccacccgacc cagcgttcaa acagcttcgg ttcgagcgcg
      721 gcaacgaccg agcgtttgaa cacgtgttca ccactccaaa acccgtcgcc ttccaaagtc
      781 gtcagcctgc cgcccgcctc ctcgaaaatc aacgcacccg cagcatagtc ccacagcttc
      841 tgcccaccgt gaacataaac atcataacgc ccgcacgcca gataacacca atccaacgta
      901 ctgctgccca tactccgtat cgttccaaaa ggcgcgagcg tactcatacg gctggaaagt
      961 ttgcccgaac gcaaatattt gatttccacg cccgcaatcg cctcattgag ttttttatcc
     1021 acgagacgca aaggcaggcg ggttccatta agaaacgcac cctgcccccg ttcggcataa
     1081 aaacattcgc cgctgaccgg attgtaaatc acacccaatt cggcgcgccc gttgcggaca
     1141 aacgccaccg acacggcaaa atgcggcagc ccgttgacaa aattgttcgt cccgtctatc
     1201 ggatcgacaa tccacagccc cttttccccc gaatattgtt cccacaaagc cgactgttcc
     1261 tgccgcgaca tttcctcgcc caacatcgga ctgtcgatta aaagcggcaa cgcggcggca
     1321 aaagccgtct gcgcggcaat gtccgcctcg ctcaacatcg aaccgtcttc cttgcggtga
     1381 gacggcgtat tcaaaaaacg cggcataatt tcggtttgcg cgatatggcg cacgactttc
     1441 tgcaaacggt gtaacacttc ctactgtcct catattttga acttgcggca cgcgaacg
//
LOCUS       DAXHNP010000241         1496 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.241, whole genome shotgun sequence.
ACCESSION   DAXHNP010000241 DAXHNP010000000
VERSION     DAXHNP010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.241"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            184..396
                     /locus_tag="ACFM5C_002077"
     CDS             184..396
                     /locus_tag="ACFM5C_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger domain-containing protein"
                     /protein_id="HFC6069707.1"
                     /translation="MPHIHPLHLFPPHIAERGLLYFQQGKVGAVQKTSTGRYRAEVCG
                     LENYWVWLKLDSDLYIKDESCDCPYV"
     gene            580..848
                     /locus_tag="ACFM5C_002078"
                     /pseudo
     CDS             580..848
                     /locus_tag="ACFM5C_002078"
                     /inference="COORDINATES: protein motif:HMM:NF017953.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
     gene            complement(938..1387)
                     /locus_tag="ACFM5C_002079"
     CDS             complement(938..1387)
                     /locus_tag="ACFM5C_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6069708.1"
                     /translation="MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRA
                     ALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLKAV
                     AIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK"
BASE COUNT          476 a          361 c          226 g          433 t
ORIGIN      
        1 ttttgcaaag gtctcagtct ttttaaacca cagcccttcc caactaaacc aaaaggtcgt
       61 ctgaacccta ttttcagacg accttttgcc actttgtaaa acaaatcttc ccaccatcct
      121 ctccccaaac atcgcccgaa ccagtaaact tctcatattt caacaacttc ttggaagcaa
      181 accatgcccc atatccaccc gctccacctg ttcccgcccc atatcgccga acgcggactg
      241 ctctattttc agcagggcaa agttggtgct gtccaaaaaa cttccaccgg gcgttatcgg
      301 gcggaggtat gcggtttgga aaactattgg gtatggctga agctggatag tgatttgtat
      361 attaaagacg aaagctgcga ttgcccttat gtctaaaggt gcaaacatac cttaaattac
      421 tatattacat aggcaaaata caagcctata acgaattgga aacaaaatgc cgtctgaaag
      481 cattataaaa tctgttcacc ttttcagatg agtaatgtac acccctatac aatttttgct
      541 actatacccc ataaatccac ggctaaagat atccttatta tgtcctatga tttatcgaaa
      601 cgacttgtaa tcggcttagc atcaagtgcc ctattcgact tatccgaatc ggataatata
      661 tttagaatgg aaggggcaga aacctatagg caatatcaga gagaaaaaca aaaccatccc
      721 ctaaaaaagg cgttgtcttt ccatttatta aaaaacttct gtcaatcaat gaaataaacc
      781 caaacgaccc aacaattggg tttattcttt tatccagaaa caatccagat acagattacg
      841 agtcataact ataggcttaa tattacacga ttctcattcc atcaaggcgg aaaaccgcac
      901 aaatactgaa acactatcga tcgatttgta aacaagccta cttaagtaac ttgcagtcct
      961 tatcatttcc tttaaaataa tccagcccgt cactacacga actggcggac ttcttgcaaa
     1021 taaaggttac tagattttca ttcatcttaa taataaaagg atttttatct ttatctatgg
     1081 ctaccgcctt caacatgaat ttactgtcta aggccccgcg cgcgattcca ttcaaacgga
     1141 tacaaaagcc ttctgcctct ttaatcggca aacttggcca tttggtagat gtttgtttaa
     1201 atctcccatt ctgcagataa aacttttcca taaaatgtgc attttctaac aaggctgccc
     1261 gcactgcatt tatctttgct ttctcaacat aattgcgata gctcggataa acaattaaag
     1321 caagtacaga caatatcaag accactgata ttaattcaac cagcgtaaac ccccgattat
     1381 cagtcattac tttacttcca ataagaacag attattcaac atatttcttt gaacagactt
     1441 actatcccat tcagcagtat gcatatttcc cactctattt tttatccgcg ggcagc
//
LOCUS       DAXHNP010000242         1493 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.242, whole genome shotgun sequence.
ACCESSION   DAXHNP010000242 DAXHNP010000000
VERSION     DAXHNP010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.242"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..217)
                     /locus_tag="ACFM5C_002080"
     CDS             complement(<1..217)
                     /locus_tag="ACFM5C_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HFC6069709.1"
                     /translation="MTYANFNINGFGDVKLTPYSPLLGYKAWDSFIGSIQSLSDLIYN
                     VDNNRNKMEITVNNAIQAADSFLSSNWK"
     gene            1252..1428
                     /locus_tag="ACFM5C_002081"
                     /pseudo
     CDS             1252..1428
                     /locus_tag="ACFM5C_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219103.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin B"
BASE COUNT          506 a          277 c          214 g          496 t
ORIGIN      
        1 tcttccaatt actgcttaaa aagctatctg cagcttgaat agcattatta acagtaattt
       61 ccattttatt tctattgtta tccacattat agattaaatc agataaggat tgaatagaac
      121 caataaatga atcccaagct ttatatccca agagtggtga atagggtgtt aatttcacat
      181 ctccaaaacc gttaatatta aaatttgcat atgtcatatc tgctttcctt tcaagtaaat
      241 taaaaaaata acgtgaggaa ttaaaattaa aaataaatta attatcgact caatataata
      301 tgaatcaatt agctctctta tggtaaatat aagaggtaaa aatactaaaa ataaactaat
      361 aaagttcaga aaaatagtaa atggaatatt ttcatatgga aaaattctac aaaatacaag
      421 taatattcca tgacatatta gcaaatgagt aaaatttatt ataaaatata taaatatttc
      481 cccatcgtaa gatatattca aataaagaaa tataaacaat atgaagtata taaaatatat
      541 tttttggcat ctaaaaaata aacttttagc aatcatatat aaatagcttg tagaataaaa
      601 aacgaaaatt attaattatc gtaggtgtgc atttattcca acacggtttc atgcagctta
      661 aaaaccaaaa attctttctc cctttatcct ttcttaaaaa tagcgttttc aaattctgca
      721 acgacaggtt tcattcaagt aggactgccg tgattgcatc aattgcttcg cggcatggca
      781 tccatatcac acaacaggac atttattctc gggtaagtcc accttcatcc tcttccgcca
      841 gcaggaacag ttacaggcta cctaaaatat gctctgtgct cggatagtaa atatttcctt
      901 tctcactatt gtttgtcatt taatcgacag tctactcttt ctctaaaatt tcgtcaataa
      961 tagttaaata tatttaaata catttaaaat aataatatac acctgtttca gtctgtctaa
     1021 aacacgggaa aatatgttat ttgatcacaa cggtgacttt gggcagcctg taccttcaat
     1081 aacgcgtgga aaatagatat atacttatat cgtattcgag gctgtcttgt ttccctcaaa
     1141 caaccattct tccacacttt tgctttacaa ttttcgtgtg tatccttaca attaccccta
     1201 ttgtttttgt atattccttt gccaaccgtt attgctatcc aatctaatat tatggctatc
     1261 gtatctacac cacaccccgc tctttccgcc ctcatcatcc tcgcccatta tcacggcatt
     1321 gccgccaaat ctttgggatt gaaggcaaag gtagtacgcc agcctgtcaa acgtttggct
     1381 atggtgacct tacctgcatt ggtatggtgt gatgacggca accattttaa ggaaaagtgg
     1441 ttgttttcgg cattctgaaa cgcaacggac gggtctatac cgttgtggtg gat
//
LOCUS       DAXHNP010000243         1465 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.243, whole genome shotgun sequence.
ACCESSION   DAXHNP010000243 DAXHNP010000000
VERSION     DAXHNP010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.243"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..597
                     /locus_tag="ACFM5C_002082"
     CDS             <1..597
                     /locus_tag="ACFM5C_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6069710.1"
                     /translation="YGYLARYTQDNATKWLSDTPGQDAYSINLIEISVYYKKTDQGWV
                     LEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPEY
                     EAYEDKRHIPENPYFHKLYYIKKGENPAIITHRNNRINQTEEDNYSTSVGSCINGFTV
                     RYYPFIREKQQLTQQELVGYHQQVEQLVQSFVNNPSKK"
     gene            614..>1465
                     /locus_tag="ACFM5C_002083"
     CDS             614..>1465
                     /locus_tag="ACFM5C_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6069711.1"
                     /translation="MNEGEVVLTPEQIQTLYGYASRGDTYGGWRYLANLGDRYADNAA
                     AIVGKDANLNGLNLWMKKGVENLWDDTVGKKTRLEKFDRVALQHFSQYVDLINENNGR
                     LPNTSEIERSYYKAVTYHGVSSSAAIDLVINRSLPDMADGYWALGLGIEAERIHNEQA
                     VNNPNGSESDNRKQLISALDKGFDGSFKEKHFTFLQSVIMDVTKLGVEYTIDGWQKIG
                     GWGNGIINDLYKSVAKREWTGIFEIVNNNIKQFRDLFPNPEGWIDDGHQCFAPWVKET
                     KKRNGKYH"
BASE COUNT          493 a          227 c          327 g          418 t
ORIGIN      
        1 tatggctatc ttgcacggta tacgcaagac aatgccacaa aatggctttc tgacacgccc
       61 gggcaggatg cttactccat taatttgata gagattagcg tctattacaa aaaaaccgac
      121 caaggctggg ttcttgagcc atacaaccag caaaacaaag cacactttat ccaatttcta
      181 cgcgatggtt tggatagcgt ggacgatatt gttatccgaa aagatgcgtg tagtttaagt
      241 acgactatgg gagaaagatt gcttacttac ggggttaaaa aaatgccatc tgcctatcct
      301 gaatatgaag cttatgaaga taaaagacat attcctgaaa atccatattt tcataaactt
      361 tactatatta aaaaaggaga aaatccggcg attattactc atcggaataa tcgaataaac
      421 caaactgaag aagataatta tagcactagc gtaggttcct gtattaacgg tttcacggta
      481 cggtattacc cgtttattcg ggaaaagcag cagctcacac agcaggagtt ggtaggttat
      541 caccaacaag tagagcaatt ggtacagagt tttgtaaaca atccaagtaa aaaataattt
      601 aaaggatctt attatgaatg agggtgaagt tgttttaaca ccagaacaaa tccaaacctt
      661 gtatggttat gcttctcgtg gcgataccta tggcggttgg cgttatttgg ctaatttggg
      721 tgaccgttat gcggataatg ctgccgcaat tgtcggtaag gatgcaaact taaatggttt
      781 gaatttatgg atgaaaaaag gggtggaaaa cctatgggat gatacggtcg gtaaaaagac
      841 ccgtttagag aaatttgatc gggttgcatt gcaacatttc agccaatatg tagatctaat
      901 taatgaaaat aatggtagat tacctaacac tagtgaaatt gagagaagtt actataaagc
      961 cgttacctat catggcgttt cttctagtgc agctattgat ttagttatta atcgttcact
     1021 tccggatatg gcggatggtt attgggcatt aggtttgggg atagaagccg aacgtatcca
     1081 caatgagcaa gcagtaaata atccgaacgg tagcgaatcg gataatagaa agcagttaat
     1141 atctgcttta gataaaggat ttgatggatc ttttaaagag aagcatttta cttttttaca
     1201 atctgtgata atggatgtaa caaagttagg tgttgaatat acaatagatg gttggcaaaa
     1261 aattggaggt tggggtaatg ggataatcaa tgatttatat aaaagtgttg caaaaagaga
     1321 gtggactgga atatttgaga tcgttaataa taacatcaag caatttagag atctgttccc
     1381 aaatccggaa ggctggatcg atgatggtca ccaatgtttc gctccttggg ttaaagaaac
     1441 taaaaaacgc aatggcaaat atcat
//
LOCUS       DAXHNP010000244         1441 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.244, whole genome shotgun sequence.
ACCESSION   DAXHNP010000244 DAXHNP010000000
VERSION     DAXHNP010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.244"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(80..1417)
                     /locus_tag="ACFM5C_002084"
     CDS             complement(80..1417)
                     /locus_tag="ACFM5C_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6069712.1"
                     /translation="MSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFL
                     LFLIFTILVALPVQLAEFYIGRTGGKNAVDSFRALRPGTQWLWVGRMGVAACFILLSF
                     YSVVGGWVLNYVVHSFTGAIHAGADFEALFGTTISNPAGSLSYQALFMLITVWVVKGG
                     ISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTMITALG
                     QAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFE
                     PSQGPGLIFIVLPAVFMKMPFGTVLFAVFMLLVVFATLTSAFSMLETVIASTIRQDER
                     KRKKHTWLIGTAIFIVGIPSALSFGVWGEFKVFGKTIFDLWDYVISAVIMPIGALSVS
                     IFTAWIQDKQSVLKDAGSGSTVPRAVLLLWLNTLRYLAPIAIIIVFINSLGIL"
BASE COUNT          448 a          381 c          350 g          262 t
ORIGIN      
        1 tgaacgaaat aggctgaacc tgaagcaaaa atgccgtctg aaaggctttc agacggcatt
       61 tttgccgttt ggagggcttt taaaggatgc ccaaagaatt gatgaaaaca ataataatgg
      121 caatcggggc aaggtagcgc aaggtattca gccacagcag cagcactgcc cgtggtacgg
      181 tgctgcccga tccggcatct tttaacacag actgcttgtc ctgaatccag gcggtaaaga
      241 tggaaacact caaagcacca atcggcataa tgacggcgga aataacatag tcccacaaat
      301 caaaaatggt tttgccgaaa accttaaact caccccatac gccgaaagac agcgcggacg
      361 ggatgccgac aatgaaaata gccgtgccga taagccaagt gtgctttttg cgtttgcgct
      421 cgtcttggcg gatggttgag gcaatgaccg tttccaacat cgaaaatgcg gaagtcagcg
      481 tggcgaaaac gaccagaagc atgaataccg caaacaaaac cgtaccgaac ggcatcttca
      541 taaacactgc gggcaatacg ataaaaatca atcccggccc ctggctcggt tcaaaaccga
      601 aggcgaacac cgccggaaaa atcaccaggc cggcaagcag cgaaaccaag aggttcatcc
      661 acataatcgt atggccggaa cggaacatat cctgatcttt tcccaaatat gaagcgtagg
      721 taatcatggc ggaaacgccg atgctcaggg caaaaaacgc ctgtcccaaa gccgtaatca
      781 tcgtatcggc tttaaagtac gaccaattcg gtttgagcag gaaagacacg ccctccattg
      841 cacccggcag cgtcagcgaa cggattgcca gcgcaataaa gaggataaac agccccggca
      901 tcagataacg gtttgccttt tcaatgccgt ctgaaatccc gcctttgacc acccaaaccg
      961 taatcagcat aaacagtgcc tgataggaca gcgaacctgc cggattggaa atcgttgtgc
     1021 cgaacagggc ttcaaagtcc gctcctgcat ggattgcccc tgtaaaactg tggacgacat
     1081 aattcaatac ccatccgccg accacgctgt aaaacgacag caaaataaag caggcggcaa
     1141 cgcccatgcg cccgacccaa agccattgcg tgcccggacg cagagccctg aaggaatcga
     1201 cggcattttt accgcccgtg cgcccgatat aaaactcggc aagctggacg ggcagggcga
     1261 ccaagatagt aaatatcaaa aacagcagga aaaacaccgc gccgccgttg gtgcctgccg
     1321 tataagggaa tttccaaatc gcgcccaaac cgatggccga acctgccgca gcaaggacga
     1381 aaccgatttt ggacgaccaa gaagtatggt tactcataaa atttattaag aaatgtgaaa
     1441 g
//
LOCUS       DAXHNP010000245         1414 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.245, whole genome shotgun sequence.
ACCESSION   DAXHNP010000245 DAXHNP010000000
VERSION     DAXHNP010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.245"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..1275)
                     /gene="mafB"
                     /locus_tag="ACFM5C_002085"
     CDS             complement(<1..1275)
                     /gene="mafB"
                     /locus_tag="ACFM5C_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6069713.1"
                     /translation="MKLPIQKFMMLFAAAISLLQIPISHANGLDARLRDDMQAKHYEP
                     GGKYHLFGDGRGSVKNRVYAVQTFDATAVGPILPITHERTGFEGVIGYETHFSGHGHE
                     VHSPFDNHDSRSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARD
                     IYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNW
                     WANRMDDIRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLS
                     PEAQLAAATALQDSAFAVKDSINSARQWADAHPNITATAQTALAVAEAATTVWGGKKV
                     ELNPTKWDWVKNTGYKKPAARHMQTVDGEMAGGNRPPKSITSNSKADASTQPSLQAQL
                     IGEQISSGHAYNKHVIRQQEFTDLNINSPADFA"
     gene            complement(1315..>1414)
                     /locus_tag="ACFM5C_002086"
     CDS             complement(1315..>1414)
                     /locus_tag="ACFM5C_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6069714.1"
                     /translation="TGNSAPSVETDNSHEGYGYSDEVVRQHRQGQP"
BASE COUNT          325 a          342 c          318 g          429 t
ORIGIN      
        1 agcaaaatct gctggtgaat tgatatttaa atccgtaaat tcttgttgtc ttatgacatg
       61 cttgttataa gcatgcccac tactaatttg ttctccaatt agttgcgctt gtaaagacgg
      121 ttgtgtggaa gcatctgctt tgctgttgga cgttatagat ttaggcggtc tattcccccc
      181 tgccatctcc ccatctacag tctgcatatg gcgggcagca ggttttttat agccggtatt
      241 tttaacccaa tcccatttgg tcgggttaag ttctactttt ttaccgcccc aaaccgtagt
      301 tgcggcctct gctacggcaa gggcagtttg ggcagtagct gtaatgttcg gatgggcatc
      361 agcccattgt ctggcagagt tgatactgtc ttttaccgca aaagcactgt cttgtaatgc
      421 ggttgcggcc gcaagttgtg cttccggact taaatttcct aaattgtgaa taccctgtaa
      481 agttttccgt gctgccgcat aggttaccgg gtttaccgca ctgtctgtaa ttgccccaac
      541 tcccaatccc tgaaaaccca ttaaaaaagg attaaccgca ccttggacga tgccgcgaat
      601 atcatccata cggttagccc accaattttt attggggtcg ctttcccata tcagttttcc
      661 tgcttcatcc gcacggctga aaaaaccaga ggcggcaccg gcattttctt ttagccaacg
      721 gtctgaaaat ggggcttgag ggacaatatt agtctttgtt tttgttgaag ttcctttgac
      781 ataatagctg tatatatccc ttgctcctcc ggggggcgga taatcgctgc cttgcggtcc
      841 gtcatatcca tcctccggat ggatttccga ccctgtccga tgaagttggt aaacagtaaa
      901 accaccgtct acaccgccgc tgaaatcaga agtgcttctt gaatcatgat tatcgaacgg
      961 actgtgtact tcatgtccgt gccctgaaaa atgggtttca tagccgataa caccttcaaa
     1021 tcctgtccgt tcgtgtgtaa taggcagtat ggggccgacc gcagttgcat caaatgtttg
     1081 gacggcgtaa acccgatttt taacactgcc gcgaccatca ccgaacagat ggtatttacc
     1141 acccggttcg tagtgttttg cctgcatatc atcgcgtaaa cgggcatcca aaccgttcgc
     1201 atgactaatg gggatttgca gcaacgatat tgctgctgca aacagcatca tgaatttttg
     1261 aataggcaat ttcattttgt tttccttggt agcaagcggt tatggtagtg tgaatcaagg
     1321 ttgcccttgt ctatgttgtc gcactacttc atcgctgtat ccatacccct catgactgtt
     1381 atcagtctct acggatgggg cagagttacc cgta
//
LOCUS       DAXHNP010000246         1403 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.246, whole genome shotgun sequence.
ACCESSION   DAXHNP010000246 DAXHNP010000000
VERSION     DAXHNP010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.246"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(41..1033)
                     /gene="porB"
                     /locus_tag="ACFM5C_002087"
     CDS             complement(41..1033)
                     /gene="porB"
                     /locus_tag="ACFM5C_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric porin PorB"
                     /protein_id="HFC6069715.1"
                     /translation="MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVEHNGGQV
                     VSVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKG
                     GFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGS
                     VQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQDVDDVKIEKYQIHRLVSG
                     YDNDALHASVAVQQQDAKLVEDNYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFD
                     DADLSNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGENKFVSTAGGVGLRHKF"
BASE COUNT          319 a          323 c          366 g          395 t
ORIGIN      
        1 gtctggcgac aggctttttg ttgataccaa tctttgcaga ttagaatttg tggcgcagac
       61 cgacaccgcc ggcagtcgat acgaatttgt tttcgccttt gccttcttgc aaccaaccgg
      121 cagaaaccaa ggcagaagtg cgtttggaga agtcgtattc cgcaccgaca accacttggt
      181 cgtaatcgtt gcttaagtct gcatcatcaa acgagccttt gaagccgtgg gcgtaagaaa
      241 cgcggggcgt tacgttgccg aagcggtatg ccaaggtagc ggcaacttcg gtttgagagt
      301 tgtgcgaata attgtcttca accaatttgg catcttgttg ctgtacggct acggaagcgt
      361 gcagggcatc attgtcgtaa ccgctgacca aacggtgaat ctggtatttt tcaatcttca
      421 cgtcatccac atcctgatgt cttttatagg caccgccata ttgcacgaag aagccgccgt
      481 ttttgtagtt gaagccggcg tggtaagatt cgctgttatg tctgcctgca ttgtcgttaa
      541 gcgcgtattg tacgctgccg ctgaggccgg caaattcggg agaatcgtag cgtacggaaa
      601 tgaggcgtgc ttcgggttcg gcaattttgt ttacacccaa atagtcgctt ttgctatccc
      661 aaggattgat gtcgccggtg tctttcagga cgctgttcaa acggccgacg cgcaatttac
      721 cgaagccgcc tttcaaaccg atgaaggatt ggcggttgcc ccaaccggag tcagtgccgg
      781 cgatagatgc cttttgctca acctgccaaa tggctttcag accgttgccg aggtcttctt
      841 ggcctttgaa gccgattttc gaacccaaat caacgatgcc ggtaccggtt tcaacgctaa
      901 ccacctgacc tccattgtgc tctacagagc gggaagtttc tacgccggct ttgatggtgc
      961 cgtacagggt aacgtcagcc attgctgcaa caggaagggc tgccaaagtc agggcaatca
     1021 gggatttttt cattgctgta ttcctttttt ggttaagaaa tttaagcagg ccgggctttc
     1081 caagccgctt agctttgcat ttaccgccga cgttttcggc gattccatgt ctgaaactat
     1141 agatgttcct gtctgaaaaa acaaacttct gcctgttttt gtgtggaatt cgatgtgtat
     1201 tttgaagggc ggatagagat attgtgggta ttttttgttt tataacatat ggttatttaa
     1261 attttttaag atttgcattt ttacaacact tactcgggag ggtattggag ggcattgcaa
     1321 accgggggtt ataaagacgg caaaaaacgc gcacgtggtt tctttcggaa cgggcggatg
     1381 caaaacccgc ccctgcggca gga
//
LOCUS       DAXHNP010000247         1375 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.247, whole genome shotgun sequence.
ACCESSION   DAXHNP010000247 DAXHNP010000000
VERSION     DAXHNP010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1375
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.247"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..468
                     /locus_tag="ACFM5C_002088"
     CDS             <1..468
                     /locus_tag="ACFM5C_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HFC6069716.1"
                     /translation="PVGALSKAKAAKQAIPTQTVKELDGLLQESKNIGAVNTRINIAN
                     STTRYTPMRQTGQPVSAGFEHVLEGHFHRPIANNRSVFTISPNELKVILQSNKVVSSP
                     VSMTPDGQYMRTVDVGKVIGTTSIKEGGQPTTTIKVFTDKSGNLITTYPVKGN"
     gene            475..984
                     /locus_tag="ACFM5C_002089"
     CDS             475..984
                     /locus_tag="ACFM5C_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069717.1"
                     /translation="MSNFEKKYILELNDALSHLNHNSTSFDLLKVLISWLSNDIVIDK
                     FKILGYDFSKYIEMNPDDYPVEKSILNREEIIYLKNNIYRKISSGNFKFQYFVQYIRD
                     ILEYLFIEHIERVCPYCEWGEMQKLEEQNTHETVYLCTQCGCAFYNDNSQFLLKTPLT
                     IPMKRDEFK"
     gene            1053..>1375
                     /locus_tag="ACFM5C_002090"
     CDS             1053..>1375
                     /locus_tag="ACFM5C_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069718.1"
                     /translation="MIYGSMPSEKLTIFQTAFVMQVNIQIPCMLYRRGSVKPPLFEAP
                     RLLPSFTDPVVPKLSAPGGYIVDIPKGNLKTEIEKLAKQPEYAYLKQLQVAKNVNWNQ
                     VQLAY"
BASE COUNT          464 a          266 c          253 g          392 t
ORIGIN      
        1 ccagtaggag cgttgtcgaa agcgaaggcg gctaagcagg ctataccaac ccagacagtt
       61 aaagaacttg atggcttact acaagaatca aaaaatatag gtgctgtaaa tacacgaatt
      121 aatatagcga atagtactac tcgatataca ccaatgagac aaacgggaca accggtatct
      181 gctggctttg agcatgttct tgaggggcac ttccataggc ctattgcgaa taaccgttca
      241 gtttttacca tctccccaaa tgaattgaag gttatacttc aaagtaataa agtagtttct
      301 tctcccgtat cgatgactcc tgatggccaa tatatgcgga ctgtcgatgt aggaaaagtt
      361 attggtacta cttctattaa agaaggtgga caacccacaa ctacaattaa agtatttaca
      421 gataagtcag gaaatttgat tactacatac ccagtaaaag gaaactaact aaatatgagt
      481 aactttgaaa aaaaatatat tttagaatta aatgatgctt taagccattt aaatcataac
      541 tctacctcat ttgatttatt gaaagttttg atttcatggt tatcaaacga tattgtcatt
      601 gataaattta aaattttagg ttatgacttt agtaaatata tcgaaatgaa tcccgatgac
      661 tatccggttg aaaaatctat attgaataga gaggaaatta tttatctcaa aaacaatatt
      721 tatcgtaaaa tatcatcagg aaattttaaa tttcaatact ttgtacaata tattagagat
      781 attttagaat atttatttat tgaacatatt gaaagagtct gtccttactg cgaatggggt
      841 gaaatgcaaa aattagaaga acaaaatacg catgaaacgg tgtatctctg tactcaatgt
      901 ggatgtgctt tttataacga taattcacaa tttttattaa aaaccccttt aaccattcca
      961 atgaaacgtg atgaatttaa ataaacaagc cgtagcctgc atgaacccta aaatccacgt
     1021 gtagcgtgtg tgcgccagca cgcatgcgtt ccatgattta cggctcaatg ccgtctgaaa
     1081 agctcacaat ttttcagacg gcatttgtta tgcaagtaaa tattcagatt ccctgtatgc
     1141 tgtacagacg cgggagtgtt aagcccccct tgtttgaagc tccgcggctc ctgccgagct
     1201 tcaccgaccc cgttgtgccc aagctctctg ctcccggcgg ctacattgtc gacatcccca
     1261 aaggcaatct gaaaaccgaa atcgaaaagc tggccaaaca gcccgagtat gcctatctga
     1321 aacagctcca agtagcgaaa aacgtcaact ggaaccaggt gcaactggct tacga
//
LOCUS       DAXHNP010000248         1362 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.248, whole genome shotgun sequence.
ACCESSION   DAXHNP010000248 DAXHNP010000000
VERSION     DAXHNP010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.248"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..958
                     /locus_tag="ACFM5C_002091"
     CDS             <1..958
                     /locus_tag="ACFM5C_002091"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6069719.1"
                     /translation="AKVAKVAKVAKVAKVAKVAKVAATAQKEAAPAQQQGGIRFSDGI
                     AAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRN
                     IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFL
                     EQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLA
                     RQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVR
                     DAGTPQERIRNSVRQYIFQQKAEQATVNLLSDLHSGAYVDIR"
     gene            1015..>1362
                     /locus_tag="ACFM5C_002092"
     CDS             1015..>1362
                     /locus_tag="ACFM5C_002092"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069720.1"
                     /translation="MDFELLLHRHSSFPRKRESGNEKQQEFIGNGWSLKDWIPAFAGM
                     TGFWVVVIYRKNKKTYAVIPEQAGIRLFKTAEIYPKQQQSFHRHSRVGGNLATKSNRN
                     LSGKQKPLCRHSRE"
BASE COUNT          376 a          398 c          347 g          241 t
ORIGIN      
        1 tgccaaagtt gccaaagttg ccaaagttgc caaagttgcc aaagttgcca aagttgccaa
       61 agttgccgcc acggcgcaaa aagaagccgc acccgcacaa cagcagggcg gtatccgctt
      121 ttcagacggc attgccgccg ttgccgacaa cgaagtcatc acgcgccgcc ggcttgccga
      181 agccgttgcc gaagccaaag ccaacctgcc caaagacgcg cagataagcg aatccgagct
      241 gtcccgacag gtgctgatgc agcttgtcaa ccaatccctg attgtacagg cgggcaaacg
      301 ccgcaacatt caagcaagcg aagcggaaat cgatgccgtc gtcgcaaaaa atcccgccct
      361 caaaaacctc agccccgccc aacgccgcga ttttgccgac aacatcattg ccgaaaaagt
      421 ccgccagcag gcagtgatgc agaacagccg cgtgagcgaa gctgaaatcg atgccttcct
      481 cgagcaggcg caaaaacaag gcatcaccct gcccgaaggc gcaccgttgc gccaataccg
      541 cgcccaacac atcctgatta aagccgacag cgaaaacgcc gccgtcggcg cggaaagcac
      601 catccgcaaa atctacggag aggcccgcag cggcacagac ttttccagcc tagcgcgcca
      661 atattcgcaa gacgcgagcg cgggcaacgg cggagatttg ggctggtttg ccgacggcgt
      721 gatggttccc gcctttgaag aagccgtcca cgcgctcaaa cccggacagg tcggcgcgcc
      781 cgtccgcacc caattcggct ggcatatcat caaattgaac gaagtgcgcg atgccggcac
      841 acctcaggaa cgtatccgca attccgtgcg gcaatacatc ttccaacaaa aagccgaaca
      901 ggcaaccgtc aacctgttga gtgacctgca ttccggcgcg tatgtcgaca tccgctaagg
      961 cggtttgaag caaaaagcca taccgatcgg caaaaatccg ggcggtatgg ctttttggat
     1021 ttcgagttac ttttacaccg tcattcatca ttcccgcgaa agcgggaatc tggaaacgaa
     1081 aagcaacagg aatttatcgg gaatggctgg agtttaaagg actggattcc cgctttcgcg
     1141 ggaatgacgg gattttgggt tgtggtaatt tatcggaaaa acaaaaaaac ctatgccgtc
     1201 attcccgagc aggcgggaat ccggttattt aaaactgcag aaatttatcc gaagcaacaa
     1261 caatctttcc atcgtcattc ccgcgtaggc gggaatctag caacgaaaag taacaggaat
     1321 ttatcgggaa aacagaaacc tctatgccgt cattcccgcg aa
//
LOCUS       DAXHNP010000249         1355 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.249, whole genome shotgun sequence.
ACCESSION   DAXHNP010000249 DAXHNP010000000
VERSION     DAXHNP010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.249"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(154..549)
                     /locus_tag="ACFM5C_002093"
     CDS             complement(154..549)
                     /locus_tag="ACFM5C_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6069721.1"
                     /translation="MMYSFEANANAVKISETVSVDTGQGAKIHKFVPKNSKTYSSDLI
                     KTVDLTHIPTGAKARINAKITASISRAGVLAGGGKLARLGAKFSTRAVPYVGTALLAH
                     DVYETFKEDIQARGYQYDTETDKFAKVSG"
     gene            complement(533..850)
                     /locus_tag="ACFM5C_002094"
     CDS             complement(533..850)
                     /locus_tag="ACFM5C_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HFC6069722.1"
                     /translation="MNKPFITQAQLALYKYQPSSKYFGQSMAVIAQSEFVEFAKINKS
                     ENVIDCFSFFWNRRIKHDIWLISFSDNSEMVIKESLKDGHKIYKFEFCEIVDNCNFDD
                     VFV"
     gene            complement(978..1256)
                     /locus_tag="ACFM5C_002095"
     CDS             complement(978..1256)
                     /locus_tag="ACFM5C_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069723.1"
                     /translation="MYYQVGNKCLEKHQAENLYFSLVVPRIKENGQIVRPEYNGSLWK
                     MSDGQPLRLLLAECSPKDNLQSGLETGWIVFGILASVYFVSLLKKVLK"
     gene            complement(1263..>1355)
                     /locus_tag="ACFM5C_002096"
     CDS             complement(1263..>1355)
                     /locus_tag="ACFM5C_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6069724.1"
                     /translation="AKADGMEAGWIVVGIFAALFVFSIVKRVMK"
BASE COUNT          364 a          327 c          255 g          409 t
ORIGIN      
        1 ttcctttccc tcccgacagc cgaaacccaa acacaggttt tcggctgttt tcgccccaaa
       61 tacctcctaa ttttacctaa ataccccctt aatcctcccc ggatacccga taatcaggca
      121 tccgggttac tttttaggcg gcaacaggcg cacttagcct gagacctttg caaatttgtc
      181 ggtttcggtg tcgtattggt agcctcgtgc ctgtatgtct tctttgaaag tttcgtatac
      241 gtcgtgggct aaaagggctg ttccgacata gggaaccgcc cttgtgctga atttcgcgcc
      301 taagcgggca agtttgccgc cccccgccaa tacgccggcg cgggaaatgc tggcggttat
      361 tttggcgttg attcgggctt ttgcgcccgt agggatgtgt gttaaatcta ccgtttttat
      421 taaatcagat gaataagttt tactattttt aggtacaaac ttatgaattt tcgcaccttg
      481 tccggtatca actgaaacag tttcagatat ttttactgca tttgcattcg cttcaaacga
      541 atacatcatc aaaattgcaa ttatcgacaa tttcgcaaaa ttcaaatttg tatattttat
      601 gaccatcttt cagggattct ttaattacca tttctgaatt atcagaaaat gagattagcc
      661 aaatatcatg tttaattctt ctattccaga aaaaagagaa acaatcaata acattttcag
      721 acttattaat cttcgcaaat tcaacaaatt cagattgcgc tataaccgcc atcgattgcc
      781 caaaatactt gcttgacggc tgatatttat aaagtgccaa ctgcgcctga gtgataaacg
      841 gcttgttcat ggttctgcct ttcaatgatt gttttgaaag cctgattttg acaccataac
      901 ttcatgcgct caattcttaa acagaaccgc cccgattaat acgggtacgg aaacgccgag
      961 ataaaaataa aaatccatca tttcaaaacc tttttcagca gggaaacaaa gtaaacggac
     1021 gcgaggatgc cgaatactat ccagcctgtt tcaagaccgc tttgcaggtt gtctttcgga
     1081 ctgcattccg ccaataaaag ccttagcggc tgaccgtccg acatcttcca caggctgccg
     1141 ttatattccg gcctgacaat ctgtccgttt tctttgattc ttggtactac caagctgaaa
     1201 taaaggtttt cagcctggtg cttctcaaga catttatttc cgacttggta gtacatgccg
     1261 tcttacttca tcactctctt aacgatggaa aagacaaaaa gcgcggcgaa aatgcccact
     1321 acaatccaac cggcttccat accgtcggct tttgc
//
LOCUS       DAXHNP010000250         1309 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.250, whole genome shotgun sequence.
ACCESSION   DAXHNP010000250 DAXHNP010000000
VERSION     DAXHNP010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.250"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(60..731)
                     /locus_tag="ACFM5C_002097"
     CDS             complement(60..731)
                     /locus_tag="ACFM5C_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6069725.1"
                     /translation="MFPDKYKLSLKENIFLAKKVLVAQIHNLSRFENCQTTLLQTEQI
                     IHGKNVASASLEDIQTILNLKRAYQYVISHISNGEPVDISLLKKINNTVAKDDSLAPG
                     DFRTGSVGVTLLDGSRHAPNPVKEIEVARVLQNIGLQSGSTTEAAVRFMLYCMRQQVF
                     WDGNKRTATLFANGLMMERGRGILEISEMQMPQFNEKLSAFYRSGDDTDISKFVYQNC
                     ISGID"
BASE COUNT          325 a          290 c          301 g          393 t
ORIGIN      
        1 aaaatcccct aaatgtcttg gtgggaattt aaggggtttt ggggaatttt gcaaaggtct
       61 cagtctatgc ccgatataca attttgatac acaaacttgg aaatatcggt atcgtcgccg
      121 gagcgataga atgcggacag tttttcattg aattgcggca tctgcatttc ggagatttcc
      181 aagatgccac ggcctctctc catcatcaga ccattggcaa ataaggttgc cgttcgtttg
      241 ttgccgtccc aaaaaacctg ctgccgcata caataaagca taaaacggac ggctgcctcc
      301 gtcgtcgaac cgctttgcag tccgatattt tgtaacacgc gggccacttc aatttccttc
      361 actggattcg gggcatgacg ggaaccgtcc aatagcgtta cgccgaccga accggtacgg
      421 aaatcaccgg gtgccaaaga atcgtccttg gcaacagtgt tgttgatttt tttaaggagt
      481 gaaatatcga ccggttcgcc gtttgaaata tgcgaaatca catattgata ggcacgtttc
      541 aggttcaaga tggtttggat gtcttccagt gacgcggagg ctacattttt gccatggata
      601 atttgttcgg tctgcaacaa ggtcgtctga caattctcaa aacggctgag gttgtgaatt
      661 tgggcaacca atactttctt tgccaaaaaa atattttctt tcaaactcaa cttgtatttg
      721 tcgggaaaca cgataattcc ttaaataatt aaagcagtac gttaaatcat catcttatca
      781 tcactttcgg ggtttatgtt gcgtgcgtcc gttttctaat acggtttccc atcccgcgaa
      841 acgaggcgga ggcctgtgca aaaaacctgt tcacgaaatt ttccgcatta acgatacgct
      901 gaaaatgcgc taaaaatgac tgtgtttgaa tatcggttga tttcatccgt ttgtgtaacc
      961 tcgcgccggt tttgtcatga ttttgcatta tagtgaatta aatttaaacc agtacagcgt
     1021 tgcctcgcct taccgtacta tctgtactgt ctgcggcttc gtcgccttgt cctgattttt
     1081 gttaattcac tatatttttg tcatgcggat atttcacggg atgacaaaac gggcgcaaaa
     1141 aagcccgatt ggaaaatccg aatcgggctt ttttgtgatg ttctgttcga tttgcgtact
     1201 aactgccggc cggagcgtcc gcgcccggtt tggcaggtcg gattctcgaa tccgacggct
     1261 atttgagatg gcaggctttt gtcggataca agtatccgac ctacggctt
//
LOCUS       DAXHNP010000251         1217 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.251, whole genome shotgun sequence.
ACCESSION   DAXHNP010000251 DAXHNP010000000
VERSION     DAXHNP010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.251"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(129..1136)
                     /locus_tag="ACFM5C_002098"
     CDS             complement(129..1136)
                     /locus_tag="ACFM5C_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFC6069726.1"
                     /translation="MLKQTTLLAACASFAALLGGCATQQPAPVIAGNSGMQDAPSSAV
                     YNNPYGATPYSPAPASDAPYVPPVQSAPVYTPPAYVPPSAPAVSGTYIPSYAPVDINA
                     ATHTIVRGDTVYNISKRYHISQDDFRAWNGMTDNMLSIGQIVKVKPAGYAAPKTAAVE
                     SRPAVPAAVQTPVKPAAQPPVQSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGI
                     VWQRPTQGKVVADFGGNNKGVDIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHN
                     SSFLTAYGHNQKLLVGEGQQVKRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIA
                     F"
BASE COUNT          281 a          327 c          347 g          262 t
ORIGIN      
        1 ccaaacacag tcaaacaaat ttatatgccc cgtcccttct gaatgatttg aaaacacagc
       61 cgccaaaaac aaaaatgccg tctgaaaacc tttcagacgg catttccaat ttgatttcag
      121 gcagaaagtc agaacgcgat atagctgttc gggttaaccg gtttgccgtt ttgccgcacc
      181 tcgaaatgaa gctgcgttct ggaagcgtcg gtattgccca tcaaagcgac ctgctgcccg
      241 cgtttgacct gctggccttc gccgaccagc aatttttggt tgtgcccgta tgcggtcagg
      301 aaggaagaat tatgctggat gatgaccaga ttgccgtatc ccctcaaacc ggaacctgca
      361 taaaccactt tgccgtcagc cgccgccaaa acgggctgtc ccgcattacc ggcaatatcg
      421 acacccttgt tgttgccgcc gaaatcggca accactttac cttgcgtcgg acgctgccaa
      481 acaatgccgc cgaccgaacg cgtgccggaa ggcgaagcgg caggagattg cggggcgggc
      541 gcgggaaccg ctttattttc cgcagcgggc gcggcaggtt gcggcgcgga ctgcacaggc
      601 ggttgcgcgg cgggtttcac aggggtttgc acggcagccg gtacggcggg cctgctttct
      661 acggctgcgg ttttcggtgc ggcatatcct gccggtttga ctttaacaat ctgaccgatg
      721 ctcaacatat tgtcggtcat gccgttccac gcacggaaat cgtcttgaga gatatggtag
      781 cgtttggaaa tgttgtacac cgtgtcgccg cgcacaatag tatgcgtcgc cgcgttgatg
      841 tcgacgggtg cgtaagaagg aatgtatgta cccgaaacgg caggtgcaga cggcggaaca
      901 taagcaggag gcgtataaac cggcgcgctt tgcaccggcg gcacataagg cgcatcgctg
      961 gcaggagccg ggctgtacgg cgttgctcca taggggttgt tgtaaactgc cgaagacggc
     1021 gcgtcctgca tacctgaatt gcctgcaatg acgggggcag gctgctgggt agcacaaccg
     1081 cccaacagtg cggcaaagga ggcgcaagcc gccaaaagtg tcgtttgttt caacataaga
     1141 taaccttcat gttccgatat atagcctgaa tgcggtatat cataataaaa atgcgcgttc
     1201 ttctcaagcg caaagcc
//
LOCUS       DAXHNP010000252         1213 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.252, whole genome shotgun sequence.
ACCESSION   DAXHNP010000252 DAXHNP010000000
VERSION     DAXHNP010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.252"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(181..333)
                     /locus_tag="ACFM5C_002099"
                     /pseudo
     CDS             complement(181..333)
                     /locus_tag="ACFM5C_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            489..>1213
                     /locus_tag="ACFM5C_002100"
     CDS             489..>1213
                     /locus_tag="ACFM5C_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFC6069727.1"
                     /translation="MNKTLYRVIFNRKRGAVVAVAETTKREGKSCADSDSGSAHVKSV
                     PFGTTHAPVCRSNIFSFSLLGFSLCLAVGTANIAFADGIIADKAAPKTQQATILQTGN
                     GIPQVNIQTPTSAGVSVNQYTQFDVGNRGAILNNSRSNTQTQLGGWIQGNLWLARGEA
                     RVVVNQINSSHSSQMNGYIEVGGRRAEVVIANPAGIAVNGGGFINASRATLTTGQPQY
                     QAGALTGFQVRSGHIAITGQGLDA"
BASE COUNT          363 a          251 c          262 g          337 t
ORIGIN      
        1 cgtccaaaat gctctttggg aatgctattg gattatagac cttacaacag aaaaaaaggt
       61 cggaaagtag aaagactgct ttttaaattc aaacggccaa gcaagtaaag acttggccaa
      121 caaatgggac aaaatccgac tgttttaaat tgccagtcaa atactggaaa acttgcgtaa
      181 atggctaaat tcactgacat caagtacatc ataactacga aaggtatccg tatacacaat
      241 gccatcagac ttaactttct ctcggataat cggcaataat gttgctgatt gcgcattagg
      301 gacaacgacg gtataaacct tgccatttcg ttcgaatggg atttttaacc gttatctagt
      361 aaagtcccta atttaataaa caaatggcag taaaatggcg gtaattgact cgccaaaatc
      421 cttgatctag aatggtcaga ctatccaatt ttttctaata actctataaa aatcaaataa
      481 ctgaaatcat gaataaaact ctctatcgtg taattttcaa ccgcaaacgt ggggctgtgg
      541 tagccgttgc tgaaactacc aagcgcgaag gtaaaagctg tgccgatagt gattcaggca
      601 gcgctcatgt gaaatctgtt ccttttggta ctactcatgc acctgtttgt cgttcaaata
      661 tcttttcttt ttctttattg ggcttttctt tatgtttggc tgtaggtacg gccaatattg
      721 cttttgctga tggcattatt gctgataaag ctgctcctaa aacccaacaa gccacgattc
      781 tgcaaacagg taacggcata ccgcaagtca atattcaaac ccctacttcg gcaggggttt
      841 ctgttaatca atatacacag tttgatgtgg gtaatcgcgg ggcgatttta aacaacagcc
      901 gcagcaacac ccaaacacag ctaggcggtt ggattcaagg caatctttgg ttggcaaggg
      961 gcgaagcacg tgtggttgta aaccaaatca acagcagcca ttcttcacaa atgaatggct
     1021 atattgaagt gggcggacga cgtgcagaag tcgttattgc caatccggca gggattgcag
     1081 tcaatggtgg tggttttatc aatgcttccc gtgctacttt gacgacaggc caaccgcaat
     1141 atcaagcagg cgcattaaca ggctttcagg ttcgttcggg tcatattgcg atcacgggac
     1201 aaggtttgga tgc
//
LOCUS       DAXHNP010000253         1190 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.253, whole genome shotgun sequence.
ACCESSION   DAXHNP010000253 DAXHNP010000000
VERSION     DAXHNP010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.253"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>1190
                     /locus_tag="ACFM5C_002101"
     CDS             <1..>1190
                     /locus_tag="ACFM5C_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6069728.1"
                     /translation="TGAGAAIVVIIVTALTYGYGAAAAGSVTAAGSSTAAAATTTAAA
                     TTTVSTAAAMQTAALASLYSQAAVAIINNKGDVGKALKDLGTSDTVKQIVTSALTAGA
                     LNQMGADIAQLNSKVRTELFSSTGNQTIANLGGRLATNLSNAGISAGINTAVNGGSLK
                     DNLGNAALGALVNSFQGEAASKIKTTFSDDYVAKQFAHALAGCVSGLVQGKCKDGAIG
                     AAVGEIVAESILGGRNPATLSDAEKHKVISYSKIIAGSVAALNGGDVNTAANAAEVAV
                     VNNALNFDSTPTNAKKHQPQKPDKTALEKIIQSIMPAHAAGAMTNPQDKDAAIWISNI
                     RNGITGPIVITSYGVYAAGWTAPLIGTAGKAAISTCMANPSGCTVMVTQAAEAGAGIA
                     TGAVT"
BASE COUNT          333 a          285 c          324 g          248 t
ORIGIN      
        1 accggagccg gtgcagcgat tgtggtgatt attgtaaccg ctctaactta tggatacgga
       61 gcggctgcag cgggtagcgt aactgccgca ggaagtagta cagccgcagc tgcaacaacg
      121 acagcggcag caactaccac tgtttctact gcagctgcca tgcaaaccgc agctttagcc
      181 tccttgtata gccaagcagc tgtagccatc atcaataata aaggcgatgt aggcaaagca
      241 ttaaaagatc tcggcaccag tgatacggtc aagcagattg ttacttccgc actgacggcg
      301 ggtgcattaa accagatggg agcagatatt gcccaattga acagcaaggt aagaaccgaa
      361 ctgttcagca gtacgggcaa tcaaaccatt gccaaccttg gaggcagatt ggccaccaac
      421 ctcagcaatg caggtatctc agctggtatc aataccgccg ttaacggcgg cagcttgaaa
      481 gacaacttag gcaatgccgc attgggagca ttggttaata gcttccaagg ggaagccgcc
      541 agcaaaatca aaacaacctt cagcgacgat tatgttgcca aacagttcgc ccacgctttg
      601 gcgggttgtg ttagcggact ggtacaggga aaatgtaaag atggggcaat tggcgcagca
      661 gttggggaaa tcgtagctga atccatactt ggcggcagaa accctgctac actcagcgat
      721 gcagaaaagc ataaagttat cagttactcg aagattattg cgggcagcgt ggcggcactc
      781 aacggcggcg atgtgaatac tgcggcgaat gcggctgagg tagctgtggt gaataatgct
      841 ttgaattttg acagcacccc taccaatgcg aaaaagcatc aaccgcagaa gcccgacaaa
      901 accgcactgg aaaaaatcat ccaaagtatt atgcctgcac atgcggcagg tgcgatgact
      961 aatccgcagg ataaggatgc tgccatttgg ataagcaata tccgtaatgg catcacaggc
     1021 ccgattgtga ttaccagcta tggagtttat gcagcaggtt ggacagctcc gctgatcggt
     1081 acagctggta aagcagctat cagcacctgt atggctaatc cttctggttg tactgtcatg
     1141 gttacgcagg ctgctgaagc gggcgcggga atcgccacgg gtgcggtaac
//
LOCUS       DAXHNP010000254         1186 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.254, whole genome shotgun sequence.
ACCESSION   DAXHNP010000254 DAXHNP010000000
VERSION     DAXHNP010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.254"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(10..456)
                     /locus_tag="ACFM5C_002102"
     CDS             complement(10..456)
                     /locus_tag="ACFM5C_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069729.1"
                     /translation="MLTKLKILLFLFLFVFVLAINLLFFFFSSDIESFGNYQFEYVYD
                     KGWPANYILVMKDGNEGNFDKIISGLVLEYYKEDDNIYFSYIDGQGFASDSCYYKPEI
                     LYGKIILNKNHIININSMEKNNFLSEDKIMKGTRNWLADPKNKCNI"
BASE COUNT          428 a          216 c          121 g          421 t
ORIGIN      
        1 gtctagagtc tatatattac atttattttt agggtctgct agccaatttc ttgttccctt
       61 cattatttta tcttctgaaa gaaaattatt tttttccatg ctattaatat taatgatatg
      121 atttttattt aaaataattt ttccatataa aatttccggt ttgtaatagc aagagtctga
      181 agcaaatcct tgcccgtcaa tataagaaaa ataaatgtta tcatcctcct tataatattc
      241 taaaaccaat ccggatatta ttttatcaaa attcccttca tttccatctt tcatgactaa
      301 aatataatta gcaggccaac ctttatcgta aacatattca aactgatagt tcccgaaact
      361 ctcgatatcc gaactaaaaa agaagaaaag caaattaata gccaatacaa aaacaaataa
      421 gaacaaaaat agcaaaattt tcaacttagt taacaatatt tacctctcct ttaaattcaa
      481 tcctgaaagg taccccttac cctgggctac caattatagt ttccatattt ctaaatattg
      541 tttttacatt acttttttct ccccccaaag gaatgcattt taaaatcatg cttttcaggt
      601 gctaatcgat acttaccatt aacatcttta atcacagata tatttccatg tatagcccaa
      661 cgtgaaaaat ctgagtatta tatacagtta taccttactg aaacaaagct agctgtacat
      721 atctgtacca tatttttact acaaacaaaa aatatttata attattaagg ataagataaa
      781 aacccccaac gccagattaa ttcttaataa tttcaaataa aaaatatttg agattttttc
      841 ttttccaaat aatatattga aatatttaaa gttaaggtag cttgatttaa ttagaaaatc
      901 aaaaaaaacc attaattaat ttttcttctt taaatatttt atatgatatt ataaaattaa
      961 ataacattgc gaaaacatat gaaatcatca aaataccaaa tatatagtgg gaatgcatta
     1021 ttatttagct ccttcttttg gctctgacaa attgacagtc cattgatatc caatgcttgc
     1081 atttgcaatt gctgacgcac ctgcccctgt tttccctgtt agtatcaatg gttcttttct
     1141 tgcaagatgt gcacctgcac aaccacctaa tactaaacca ccacct
//
LOCUS       DAXHNP010000255         1152 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.255, whole genome shotgun sequence.
ACCESSION   DAXHNP010000255 DAXHNP010000000
VERSION     DAXHNP010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.255"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(231..1085)
                     /locus_tag="ACFM5C_002103"
     CDS             complement(231..1085)
                     /locus_tag="ACFM5C_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6069730.1"
                     /translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
                     ACRRHVGKIPREEWKPLLIVSFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
                     GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
                     PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWSVGMVLSLLYLGLGCGW
                     YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
                     AGRLSHQK"
BASE COUNT          323 a          343 c          303 g          183 t
ORIGIN      
        1 tcccgtcatt cccgcgcagg cgggaatccg gacatccaac gctgcagcaa tttgtcggaa
       61 ataaccgaaa ctcaaaaaac cggatgcccg cctgcgcggg aatgacgacg caaagatggt
      121 cgttatttcg gataaatatc cgtcttttcg ttccggatac ccgctttcgc aggaatggag
      181 atggaaagat ttcagcctat tcggcaatca tcaaataccg cttcccaact ttatttttga
      241 tgcgacagcc ggccggcaac caaggtggcg gcgatgacga caaacacgcc caaggcggac
      301 acgggcgaca ggtgttcgcc caaaatcaaa accgccagca gcacgccgac gacgggttcg
      361 agcgaaatca acagtcccga aacgttggca ggaacacggc tcatcccctt gttccacagc
      421 caataggcgt accagccgca ccccaaaccc aaatacagca gcgacaatac catcccgacg
      481 ctccagtcca cggtataact ttgcgccaaa gcaagcgaaa acggcaggca catcaacgat
      541 gcggcggcaa tggaaacaga tgtgaatgcc ggtgcgccga tgcgtgcaat cagcctttgc
      601 gtcggacgca tagcggcaca aaagcccgcg cccgccaaca acaccagcag gcagccgaac
      661 cagccgactt cgccgccctc ttccgcaccg cccgccatca gcagcgcgac accggcaaat
      721 gccgccgcgc cgcatatcca gtggtaggca cgcgctttgt cgttgaagaa aaagtgtccg
      781 acaaacacca tcagcagtgg ctcgagtccg acaatgaccg atgcgctggc ggcggaagtg
      841 tatttcaacc cgacaaactg aagcagcagg gtcagcacat agttgacgaa cgacacaatc
      901 agcaacggct tccattcctc acgcggaatc ttgccgacat gacggcggca ggcgggcagt
      961 gcaggcagcg cggcaattag caggcgcacg ccgaccatca atgcgggatc gatgccgcca
     1021 tagacatatt tggcggcaat aaacgagctg ctccagataa tcagggcaag gatttggtaa
     1081 aacatagtga gtgataaagt cagatggtca tacaaaagta tagcggatga acaaaaatca
     1141 ggacaaggcg gc
//
LOCUS       DAXHNP010000256         1112 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.256, whole genome shotgun sequence.
ACCESSION   DAXHNP010000256 DAXHNP010000000
VERSION     DAXHNP010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.256"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            153..1052
                     /locus_tag="ACFM5C_002104"
     CDS             153..1052
                     /locus_tag="ACFM5C_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6069731.1"
                     /translation="MGKGGDIVVGNGKKYAAPLLVLGCVVFGLGSLIVRSVPVGSYAI
                     AFWRLLISVFVFWFLARFFGQKFPKNRKTVRYALTAGVFLAFDLALWHESIHAVGPGI
                     STLLNSLQIFFLSAIGVFFFGERLSGLKKAGLISAVAGVAMIAGAEFGYNGNAVWGFA
                     SGLVSGLMLALSMVFVRKTHEIEPVALFPSMMILSLGGAVSLVVPALLMDGGVLYPTT
                     WKDAGLVLVYGVVMQCFAWAMVAYAIPLLSLSLTGLLLLSEPVAALFIDYFGLGKPIE
                     GVQWAGVALTLSAIYLGSLKQQS"
BASE COUNT          188 a          254 c          355 g          315 t
ORIGIN      
        1 gggttttatc cggcaggacg gttttttgcc ccaacggaaa atagccgatc tgcccgtaaa
       61 atcagccgtt tgtccgggtg cagccggggc tttgggcttc agacggcata ttttcggaat
      121 ggcggcattc ttgccgtcgg cgcggcagcc gtatggggaa gggaggggat attgtggtcg
      181 gtaacggcaa aaaatatgcc gcaccattgc tggtgctggg ttgcgtggtg ttcggtctgg
      241 gcagtctgat tgtcagatcc gtccccgtcg gttcgtatgc aatcgcattt tggcggttgc
      301 tgatttcggt gttcgtattt tggtttttag cacggttttt cgggcaaaaa ttcccaaaaa
      361 acaggaaaac cgtccgatat gccctgacgg cgggcgtgtt tctcgctttc gatttggcgt
      421 tgtggcacga aagcatacac gcggtcgggc cgggtatttc caccctgctc aacagcctgc
      481 aaatcttttt cttgtcggca atcggtgttt tctttttcgg cgagcgtttg agcgggctga
      541 aaaaggcagg cttaatatcg gcagttgccg gcgtggcgat gattgccggt gcggaattcg
      601 gctacaacgg taatgcggtt tggggattcg ccagcggttt ggtatcggga ctgatgctcg
      661 ccctgtcgat ggtgttcgtc cgcaaaaccc atgaaatcga gccggtggcg cttttccctt
      721 caatgatgat tttgagtttg ggcggcgcgg tatcgctggt tgttccggca ttgctgatgg
      781 atggcggcgt gctttatccg acgacttgga aagatgcggg tttggtgctt gtgtacggcg
      841 tggtgatgca gtgcttcgcg tgggcgatgg ttgcctatgc gattccgctg ctttcgctgt
      901 cgctgacggg gctgctgctt ttgtccgaac cggttgccgc cctgttcatc gattatttcg
      961 ggttgggcaa accgattgaa ggcgtgcagt gggcaggggt ggcgctgacg ctttcggcaa
     1021 tttacctcgg ttcgctgaaa cagcagtctt aatattgatt ccatcaaggt agtattggca
     1081 gttttccgtg caaaacctgc gttaccggac tg
//
LOCUS       DAXHNP010000257         1082 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.257, whole genome shotgun sequence.
ACCESSION   DAXHNP010000257 DAXHNP010000000
VERSION     DAXHNP010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.257"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            284..721
                     /locus_tag="ACFM5C_002105"
     CDS             284..721
                     /locus_tag="ACFM5C_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VapD"
                     /protein_id="HFC6069732.1"
                     /translation="MSRYLITFDMDTNCLKDNYHGNNYTNAYSDIKTILARHGFENIQ
                     GSVYLGREGISEAHGTIAIQELTARFDWFYSCISNIKFYRLESDLNAQFIADGVYQAK
                     QAFLQRVEQLRISLTEAGLSDEQINQVLEKQKFELESPNLKLN"
BASE COUNT          338 a          248 c          219 g          277 t
ORIGIN      
        1 gccaccaaaa cccttgctag ctaagggtta aacagctcac ttgaaatcta cttaagtcta
       61 atctaaacta tccaatatgg atagattttt aaacataggg caagcagcaa aattattgta
      121 gctgaaagca caatcactcg ctggtggtct caaacacgtg ccgactacct cgccgaaaac
      181 actatcagcc gcgataaacc gtgggaaaag ctcgttatca gccgccgcac ttggtactat
      241 cgcgggaaac cgatgctgtc tgaaacgcaa caggagaaaa ataatgagcc gttacctgat
      301 tacctttgat atggatacca actgcctgaa agacaattac cacggaaata actataccaa
      361 tgcctactcc gatattaaaa ccatcttggc tagacatgga tttgagaaca ttcagggcag
      421 tgtttatcta ggccgtgaag gcatcagtga agcacacgga acaatagcca ttcaggaact
      481 gaccgctcgg tttgattggt tttactcctg tatttcaaac attaagtttt accgccttga
      541 aagtgatttg aacgcacaat ttatcgctga tggtgtgtat caagccaaac aggctttcct
      601 tcaacgtgtt gaacaacttc gtatatccct aacagaagct ggattgtctg atgagcaaat
      661 caatcaggtt ctggaaaaac agaaatttga attggaaagt cctaacctga aattaaatta
      721 acctccttta ctcaccaaca tccgccgcag ctctgtcagt ttttggcgcg ctgcggcgat
      781 ttctgtgcgt tttagagctt cgggtagggt gtgaaacaac tcactcgaaa tttacttaag
      841 tctaatctaa actatccaag cagtaattag tacaaaaaag gcaaacttat tttaggagct
      901 taaaattgca gccgcgataa accgtgggag agtctcggca tttcccgcgc cacttggtac
      961 aaacgtggca aaccgatgcc gtctgaaacc gtacaacagg agacaaaata atgcttgctc
     1021 aaatcgaact cacaccctgc cagctaatgg tttacgtaac ttaaggttac tggatttacg
     1081 ca
//
LOCUS       DAXHNP010000258         1051 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.258, whole genome shotgun sequence.
ACCESSION   DAXHNP010000258 DAXHNP010000000
VERSION     DAXHNP010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.258"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..165
                     /locus_tag="ACFM5C_002106"
     CDS             <1..165
                     /locus_tag="ACFM5C_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6069733.1"
                     /translation="TKQVTKGVFDGKGEAKIPSYTWHHHQDTGRMQLISERKHTQTGH
                     IGGEAMDKGK"
     gene            168..566
                     /locus_tag="ACFM5C_002107"
     CDS             168..566
                     /locus_tag="ACFM5C_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069734.1"
                     /translation="MLGLTRNNCDDLGFAILCYERNAADKKEFLDWLYEIVRTVPAES
                     FPRYLIDLIDCLESDDCSINIYNIIGFVPTTGMTKKEKDAVYGITYIRNQEFYDIPIT
                     REKALKALKKHPEIYQKFRHFFPFVELPPL"
     gene            667..>1051
                     /locus_tag="ACFM5C_002108"
     CDS             667..>1051
                     /locus_tag="ACFM5C_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069735.1"
                     /translation="MWKIIKEDSDDLGFAIKCLFSQSIDLNEFKLWIEQVIRDMPIED
                     IPFYIFDLADFDVGIGDIGNIVGFAPSSSLPKSKKNALTGIAFLRGIDVYDPPVSKEK
                     ALKALEKYPEIYQKFQHFFPFVELPP"
BASE COUNT          346 a          171 c          229 g          305 t
ORIGIN      
        1 acaaagcagg taaccaaagg agtgtttgac ggaaaaggag aagctaaaat accgagctat
       61 acttggcatc atcatcagga tacgggacga atgcagttaa tatccgaaag aaagcatacg
      121 caaacagggc atataggtgg tgaagcaatg gataaaggaa aatgattatg ttggggctta
      181 cacggaacaa ttgtgatgat ttgggatttg ctatattgtg ttatgagcgc aatgcagccg
      241 acaaaaaaga attcttggat tggttatatg aaattgtcag gactgtccct gccgaaagtt
      301 ttccaaggta tctgattgat ttaatagatt gtttggaatc agatgattgt tccataaata
      361 tatataatat tattggcttt gttccaacta ccggtatgac gaaaaaggaa aaagatgccg
      421 tatatggcat tacctatata cggaatcaag agttttacga tattccgatt actagggaga
      481 aggcgttaaa agccttaaaa aaacatcctg aaatttatca gaagtttcgg catttctttc
      541 cgtttgtaga actgcccccg ctttaaacag tcaaaatgcc gtctgaaacg atattcggct
      601 ttcagacggc atttttgaca caaagcaggt aaccaaaaga gcgtttgacg gcaaaggaag
      661 ataattatgt ggaaaatcat aaaagaggat agtgatgatt taggatttgc aattaaatgc
      721 ttattctctc aatctattga tttaaatgaa ttcaagttat ggattgaaca agtaatacga
      781 gatatgccca ttgaggacat ccctttttat atttttgact tggcggattt cgatgtagga
      841 attggcgata ttggcaatat tgtaggtttt gctccgagtt ccagcctgcc gaaatcgaaa
      901 aaaaatgcct tgaccggcat tgccttctta agggggatag atgtctatga ccctcccgtt
      961 tcaaaagaaa aagcattaaa agccttagag aaatatcctg aaatttatca gaaatttcag
     1021 catttctttc cgtttgtaga gctgcctccg c
//
LOCUS       DAXHNP010000259         1035 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.259, whole genome shotgun sequence.
ACCESSION   DAXHNP010000259 DAXHNP010000000
VERSION     DAXHNP010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.259"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(302..688)
                     /locus_tag="ACFM5C_002109"
     CDS             complement(302..688)
                     /locus_tag="ACFM5C_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HFC6069736.1"
                     /translation="MRKILLDTHALLWWLLDDKKLGTSARKLIENPRNAIFVSAASIW
                     EISIKQNKGLLKLPEEFFDVLQEEDFEMLPIGLFHAKQAGSLPEIHKDPFDRMLIAQT
                     QAEGFELMTVDEYIPQYGIRVVNASS"
     gene            complement(685..930)
                     /locus_tag="ACFM5C_002110"
     CDS             complement(685..930)
                     /locus_tag="ACFM5C_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFC6069737.1"
                     /translation="MFQANIHQAKTNLSQLIQRAEAGEIVIIAKAGKPCVQLTGIEKP
                     ARNAGRLKKFSHMGNTDISRILEDDNETAALFEESAL"
BASE COUNT          281 a          244 c          184 g          326 t
ORIGIN      
        1 acacagccat atatattaag tacctgctct ttatgcgctt ttttaggaaa ggaagatcaa
       61 acggttcaat agcgaagtct tgcccaaatt tgatggacag gatatagaat acatgcgtgc
      121 ataccacacc ctgccaaagt tgggagatgc acttaaggtt gcacttgtgg tcgccaacta
      181 tgcctataca cgcggatttc ccgcgtttat aggccgcgac ggaagtctgg cttttaagcg
      241 aagacaataa ccgaaaagac cgcctcggcg gtctttcttg tgtacacagt ttttatattt
      301 gtcagcttga tgcattgaca actctaattc catattgcgg aatatattca tcgacagtca
      361 tcagttcaaa gccttccgct tgggtttgtg caatcaacat cctatcgaaa gggtctttgt
      421 gtatttccgg aaggcttcca gcctgttttg catgaaacag acctataggc agcatttcaa
      481 aatcctcttc ttgaagcaca tcaaaaaact cttccggtaa tttcaacaac cccttgttct
      541 gcttgatgga aatttcccaa atacttgctg cactgacaaa gatcgcattt ctcggatttt
      601 ctatcagttt gcgtgcagat gtccccagtt tcttgtcatc caacaaccac cacagcaaag
      661 catgggtatc aagcagaatc tttctcacag agccgactcc tcaaataaag ctgccgtttc
      721 attgtcatcc tcaagaatac gtgaaatatc cgtatttccc atatgactga attttttcaa
      781 ccttcctgca tttcgtgccg gtttttcaat accggttagt tggacgcaag gcttacctgc
      841 tttcgcaata ataacgattt cccctgcttc tgctctttga atcaattgac tcaaattggt
      901 ttttgcctga tgaatatttg cttgaaacat aacacttctc atgattagct aacttaacta
      961 atatacatca ttaccaagat tttgggaatc tcattacata tatttgatta tatccgccgt
     1021 tttattcaca ccttg
//
LOCUS       DAXHNP010000260         1021 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.260, whole genome shotgun sequence.
ACCESSION   DAXHNP010000260 DAXHNP010000000
VERSION     DAXHNP010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.260"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..545
                     /locus_tag="ACFM5C_002111"
     CDS             <1..545
                     /locus_tag="ACFM5C_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="immunity 49 family protein"
                     /protein_id="HFC6069738.1"
                     /translation="ANDTEAFVNRYDLNRHMIYNTLLMVEGKQLDRLKQRSEKVLAHP
                     TPSKWLQKRLYDYRFFLAFAEQDAEAMKAALEPLFDKKTARMAAKETLSYFDFYLQPQ
                     IVTYAKIASMHGFDLGIDHEIAPRDLTVYDPLPADEYQDIFDFMKQYDLSYPYEYLQD
                     WIDYYTFKTDKLVFGNAKRE"
BASE COUNT          281 a          258 c          223 g          259 t
ORIGIN      
        1 tcgccaacga tacagaagcc ttcgtaaacc gatacgacct caaccgtcat atgatttaca
       61 atactctgct gatggtggag ggtaagcagc ttgatcggtt gaaacaacgt agcgagaaag
      121 tcttggcgca tcccacccct agcaaatggc tgcaaaagcg gttgtacgat taccgcttct
      181 tcctcgcttt cgccgaacag gatgccgagg cgatgaaggc cgccttagag ccgctttttg
      241 ataaaaaaac cgcgcgtatg gctgccaaag aaacattgtc ctatttcgat ttctacctgc
      301 agccgcaaat cgttacctac gccaaaatcg catccatgca cggtttcgat ttgggcatag
      361 accacgaaat cgcgccgagg gatttgactg tttacgatcc gctgccggca gacgaatatc
      421 aagacatctt cgattttatg aaacagtatg acttgtctta cccgtatgaa tatctgcagg
      481 attggataga ttactatacg ttcaaaaccg ataagctggt atttggtaac gcgaagcgag
      541 agtgagccgt aaaactctga gctcctgttt tatagattac aactttaggc cgtcttaaag
      601 ctgaaagatt ttcgaaagct ataaattgaa gcccttccac agtacataga tctgtgttgt
      661 ggcggggctt taccacgctg attgccggag aagaactcaa cctgctggca aaacaaggca
      721 tgagatcttt gcaataacat gagttgagac ctttgcaaaa aagcccttcc ccgacatccg
      781 aaacccaaac acaggatttc ggctgttttc gtaccaaata cctcctaatt ttacccaaat
      841 atccccttaa tccttcccgg atacccgata atcaggcatc cgggctgcct tttaggcggc
      901 gcgggcgcac ttagcctgtt ggcggctttc aacaggttca aacacaccgc cttcagatgg
      961 tttgcgtact cactttgtca tttccaatgt tccaagtaca cctactacga taagaggaag
     1021 a
//
LOCUS       DAXHNP010000261         1020 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.261, whole genome shotgun sequence.
ACCESSION   DAXHNP010000261 DAXHNP010000000
VERSION     DAXHNP010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.261"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>1020
                     /gene="tuf"
                     /locus_tag="ACFM5C_002112"
     CDS             <1..>1020
                     /gene="tuf"
                     /locus_tag="ACFM5C_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012081251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFC6069739.1"
                     /translation="QIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNM
                     ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELV
                     EMEIRDLLSSYDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVD
                     KPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLL
                     DEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFF
                     ANYRPQFYFRTTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGR
                     TVGAGV"
BASE COUNT          269 a          276 c          268 g          207 t
ORIGIN      
        1 caaatcgaca acgcacccga agaaaaagca cgcggtatta ccattaacac ctcgcacgtg
       61 gaatacgaaa ccgaaacccg ccactacgca cacgtagact gcccggggca cgccgactac
      121 gttaaaaaca tgattaccgg cgccgcacaa atggacggtg caatcctggt atgttccgca
      181 gccgacggcc ctatgccgca aacccgcgaa cacatcctgc tggcccgtca agtaggcgta
      241 ccttacatca tcgtgttcat gaacaaatgc gacatggtcg acgatgccga gctgttggaa
      301 ctggttgaaa tggaaatccg cgacctgctg tccagctacg acttccccgg cgacgactgc
      361 ccgattgtac aaggttctgc actgaaagcc ttggaaggcg atgccgctta tgaagagaaa
      421 atcttcgaac tggctgccgc attggacagc tacatcccga ctcccgagcg tgccgtggac
      481 aaaccgttcc tgctgcctat cgaagacgta ttctctattt ccggtcgtgg tacagtagta
      541 accggtcgtg tagagcgcgg tatcatccac gttggtgacg agatcgaaat cgtaggtctg
      601 aaagaaactc aaaaaaccac ttgtaccggt gttgaaatgt tccgcaaact gctggacgaa
      661 ggtcaagcag gcgacaacgt aggcgtattg ctgcgcggta ccaaacgtga agacgtagag
      721 cgtggtcaag tattggctaa accgggtaca atcactcctc acaccaagtt caaagcagaa
      781 gtatacgtac tgagcaaaga agagggtggc cgtcataccc cgttcttcgc taactaccgt
      841 ccgcaattct acttccgtac caccgacgta actggcgcgg ttactttgga agaaggtgta
      901 gaaatggtaa tgccgggtga aaacgtaacc atcaccgtag aactgattgc gcctatcgct
      961 atggaagaag gtttgcgctt tgcgattcgc gaaggcggcc gtaccgtggg tgccggcgtg
//
LOCUS       DAXHNP010000262         1007 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.262, whole genome shotgun sequence.
ACCESSION   DAXHNP010000262 DAXHNP010000000
VERSION     DAXHNP010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.262"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..448)
                     /gene="mafA"
                     /locus_tag="ACFM5C_002113"
     CDS             complement(<1..448)
                     /gene="mafA"
                     /locus_tag="ACFM5C_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6069740.1"
                     /translation="MKTLLLLIPLVLTACGTLTGIPAHGGGKRFAVEQELVAASSRAA
                     VKEMDLSALKGRKAALYVSVMGDQGSGNISGGRYSIDALIRGGYHNNPESATQYSYPA
                     YDTTATTKSDALSSVTTSTSLLNAPAAALTRNSGRKGERSAGLSVNG"
     gene            complement(571..960)
                     /locus_tag="ACFM5C_002114"
     CDS             complement(571..960)
                     /locus_tag="ACFM5C_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069741.1"
                     /translation="MWKITKEQGQDLSFATYCLLSAAINLQEFKLWLEKVVLDMPIDN
                     IHFYIFDLIDLKEGVGDIYNILDFVPNSDLSKDQDDALTGIAFLRGIDVYDPPVSKEK
                     ALKALKKHPEIYQRFQHFFPFVELPPL"
BASE COUNT          239 a          199 c          279 g          290 t
ORIGIN      
        1 tgccgttgac ggacagtccg gcggagcgtt cgcctttgcg tccgctgttt ctagtcaggg
       61 cggcggcggg ggcgtttaag agcgatgtgg aagtggttac gctggagagc gcgtcggatt
      121 tggtggtggc ggtagtgtcg taggcggggt agctgtattg ggtggcactt tcggggttgt
      181 tgtggtagcc accgcgtatc agtgcgtcga tagagtagcg tccgccgctt atgttgcccg
      241 aaccttggtc gcccataacg gagacgtaaa gggcggcttt gcgtcctttc agggcggaca
      301 aatccatttc tttgacggcg gcgcgggacg atgcggcgac gagttcctgt tcgacggcaa
      361 agcgtttgcc gccgccgtgg gcgggtatgc cggtcagtgt gccgcaggcg gttaggacga
      421 gggggatgag gaggagcagg gttttcatag cggggtttgt ttgatgttga acggattttg
      481 agtgtaaagg gattttaagg gtttgtaaac aaaaggggcg aaaatgccgt ctgaacggcg
      541 gaacggtctt tcagacggca ttttgactgt ttaaagcggg ggcagttcta caaacggaaa
      601 gaaatgctga aacctctgat aaatttcagg atgtttcttt aaggctttta atgctttttc
      661 ttttgaaacg ggagggtcat agacatctat accccttaag aaggcaatgc ctgttaatgc
      721 gtcatcttgg tctttagata agtctgaatt cggaacaaaa tccaaaatat tataaatatc
      781 tcctactcct tctttaagat caattaaatc aaaaatataa aaatgtatat tatcaatagg
      841 catatctaag acaaccttct ccaaccataa tttaaattct tgcaaattaa ttgctgccga
      901 taataagcaa tatgttgcaa aacttaaatc ttgaccttgc tctttcgtaa ttttccacat
      961 aattatcttc ctttgccgtc aaacgctctt ttggttacct gctttgt
//
LOCUS       DAXHNP010000263          988 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.263, whole genome shotgun sequence.
ACCESSION   DAXHNP010000263 DAXHNP010000000
VERSION     DAXHNP010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.263"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(17..955)
                     /locus_tag="ACFM5C_002115"
     CDS             complement(17..955)
                     /locus_tag="ACFM5C_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069742.1"
                     /translation="MDAYTEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGTLLPNGP
                     LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEHGMPVLYVSYLGLVREA
                     ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVSRLRIWANSADTEEVRQMRLKRIH
                     LCWGVEPENWSEEYVLQRYEMLYESGLIVEAAEPQANFDFALTGQPMRHDHRRVLATA
                     LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
                     TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
BASE COUNT          182 a          280 c          315 g          211 t
ORIGIN      
        1 gtcgtctgaa aacgggctaa cggctgccca gcggcaatcc gatgtccgaa atcagcctgt
       61 cgggcaggac gtcgtcgcgg aagcggcaaa gctgcgcggg acggcctttg ctgcccgata
      121 cgccggtatc cgacggctcg ataaggtttt gctgctgaat ctggcggcgg aagttttgct
      181 tgtgcagcaa tcttccgctg atggcttcga cactgttttg cagttgcagc agcgtgaatt
      241 cgggcggcat cagttcaaaa atcacggggc ggtatttgat tttggcgcgc aggcgggaca
      301 gggcggtcgc cagtacgcga cggtgatcgt ggcgcatggg ctgccccgtg agcgcgaagt
      361 cgaagtttgc ctgcggctcg gcggcttcca ctatcagacc gctttcatac agcatttcat
      421 agcgttgtaa aacgtattct tccgaccagt tttccggttc gaccccccag cacaaatgaa
      481 tgcgcttgag ccgcatttga cgcacttcct ccgtgtccgc cgaatttgcc caaatgcgca
      541 ggcggctgac gacggcgtcg cgctgcccgc cgtcggtgcg caagtcttcc cacgggaaat
      601 agccgtagca gtcctgccat ttcgcatccg ggtgcaggat gctgtcggct gcctcgcgca
      661 ccagccccaa atagctgacg tacaagacgg gcatgccgtg ttcgttgcgg cggtgggtat
      721 cgacaaaggt gtaaagctgt tccacatagc ccataggctg cgaagtctgc ttggcaaccc
      781 acagcttcac gcccgcctgc agggaattgc gcagagggga gagcgggccg ttgggcagga
      841 gtgtgccttg ggcgacggtt aatacccgca ggccgccgtc ggtaacggca atcaatacgg
      901 gaaccagctc gacgatgctt tgcggcgggg cttcggcttc ggtgtaggca tccatgctcg
      961 gctttctgcg ggtgggaaag gctttatt
//
LOCUS       DAXHNP010000264          952 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.264, whole genome shotgun sequence.
ACCESSION   DAXHNP010000264 DAXHNP010000000
VERSION     DAXHNP010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.264"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            58..783
                     /locus_tag="ACFM5C_002116"
     CDS             58..783
                     /locus_tag="ACFM5C_002116"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFC6069743.1"
                     /translation="MPRFYLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFDGKG
                     KAHAAQLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVT
                     AIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKM
                     PSESTKLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGFQAVTLGKR
                     ILRTETAPLAALAAMQTLWGDFA"
BASE COUNT          251 a          328 c          212 g          161 t
ORIGIN      
        1 tgtccgtttc catcacgccg ctgcgacaga ttataaccgt ccgaaccgcc aaaaactatg
       61 ccccgattct acctgcccga aaacctttcc gtcggacaaa ccgtcgccct gcccgacaac
      121 atcgtccgcc acctcaacgt cctacgcgtc cgccccaacg aaaacatcac cctcttcgac
      181 ggcaaaggca aggcacacgc cgcacagctg accgttttgg aaaaacgccg cgccgaagcc
      241 gaaatcctgc acgaagacac aaccgacaac gagtccccgc tcaacatcac actgatacaa
      301 tccatctcct ccggcgatcg catggatttc accctgcaaa aaagcgtcga actcggcgta
      361 accgccatac agcccgtcat cagcgaacgc tgcatcgtcc gcctcgacgg agaacgcgcc
      421 gccaaacgcc tcgcacgctg gcaggaaatc gtcatctccg cgtgcgaaca aagcggcagg
      481 aacaccgttc cccccgtact gcccatcatc ggctaccgtg aagcactcga caaaatgccg
      541 tctgaaagca ccaagctgat tatgagcatc aaccgcgccc gcaaactcgg cgacatccgc
      601 caaccgtccg gcgcaatcgt ctttatggtc gggcctgaag gcggctggac agaacaggaa
      661 gaacaacagg catttgatgc cggctttcag gcggttacac tcggcaaacg gattttacgc
      721 acagaaaccg ccccactcgc cgccctcgcc gccatgcaga cgctttgggg cgatttcgca
      781 taaacagaaa tgccgtctga aacccgttca gacggcattt tgcagccgat taagatagta
      841 ggttcaaata agatttcccg tgtcgtcatt cccgcgaaag cgggaatcta gaaacgaaaa
      901 actacaggga tttatccgaa acaacaaccc tctccgccgt cattcccgcg ca
//
LOCUS       DAXHNP010000265          908 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.265, whole genome shotgun sequence.
ACCESSION   DAXHNP010000265 DAXHNP010000000
VERSION     DAXHNP010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.265"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..>908)
                     /locus_tag="ACFM5C_002117"
     CDS             complement(<1..>908)
                     /locus_tag="ACFM5C_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6069744.1"
                     /translation="RLGAKLSTRAVPYVGTALLAHDVYETFKEDIQAQGYQYDPETDK
                     FVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLAR
                     PFWNWHKEELNKLSSLDWNNFVLNRCTFNWNGGDCLVNKGDDFRNGADFSLIRNSKYK
                     EEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQ
                     VVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPG
                     TSPNPEPDPDLNPDANPDTDGQPGTRP"
BASE COUNT          190 a          211 c          220 g          287 t
ORIGIN      
        1 ggtcttgtgc cgggctgtcc gtccgtatcg ggatttgcat cgggattcaa atcggggtcg
       61 ggttcgggat tggggctcgt gccggggttc tcattggggt tcgggttgtt tgcggggttt
      121 tcggcgggcg atacttcggg cagcggctgt gcgttcggtg cttccgcgct tccgggggtc
      181 aagtcgggac gcgggattac ttgaacatcc accgtggtgt tgccttgcga atccctgccg
      241 aatgttgcga caacctgaac gggattcccg ttcctgtccg tgacgggacc catattcact
      301 tttgttccgg gtgcgacttc tactttttcg gaataaccgg gataaccggt tgcctttatg
      361 tatttgtcgg gattggcatc gactttcaac gataaaatct cttccagctt tttggcatcc
      421 atttcttctt tgtattttga attgcgaata agggaaaaat cagccccatt tctgaaatca
      481 tcacctttat tgaccaaaca atctccgcca ttccaattaa atgtgcaacg atttaaaaca
      541 aaattattcc aatccaaaga acttaattta ttcagttctt ctttatgcca attccaaaac
      601 ggacgtgcca gcctatacat ttggctttcc atcaattctt tgacttcggg gaatctgctg
      661 tcatcggaca taaggcgcat aatcgaactg tcaacgccgt agcagccata ggttctatta
      721 atacgtcttt tgtcttcgta ccaaaggcaa ttactatatt cgtagccttt tacaaatttg
      781 tcggtttcgg ggtcgtattg gtagccttgt gcctgtatgt cttctttgaa agtttcgtat
      841 acgtcatggg ctaaaagggc tgttccgaca taaggaactg cccttgtgct taatttcgcg
      901 cctaagcg
//
LOCUS       DAXHNP010000266          906 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.266, whole genome shotgun sequence.
ACCESSION   DAXHNP010000266 DAXHNP010000000
VERSION     DAXHNP010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.266"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(55..834)
                     /locus_tag="ACFM5C_002118"
     CDS             complement(55..834)
                     /locus_tag="ACFM5C_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HFC6069745.1"
                     /translation="MKLVRPQKISDQVLSVLEERIAEGVYAEGGKIPPERVLAEEFGV
                     SRPSVRSALNVLVARQVLEARQGDGYYVSVKPQQDFLQSWQELLGKHSNWEQDVFDFS
                     CHIEGCMAALAAERRTDADLKRIGFWLEKFEEACESGNLEHQSEADVSFHQTIADAAH
                     NLLFSHLSGGLLKMLYRQTRSSLIYLNQEEDPRPKLMAQHRVLYEAISNRRPGEASEA
                     AKAHLNYVASSIMKDREYQSRNRHADTLAQNDLKRVQDWEV"
BASE COUNT          222 a          291 c          179 g          214 t
ORIGIN      
        1 aatttagttc actataccga tacatccgaa tatgccagac cgtctaaacg gtattcatac
       61 ctcccaatcc tgcacgcgct tcaaatcgtt ttgcgccaaa gtatccgcgt ggcggttacg
      121 gctctgatat tccctgtctt tcatgatgct gcttgccaca taattcaaat gtgcctttgc
      181 cgcctccgaa gcctcgcccg gccgacggtt cgatatcgcc tcatacagca cgcggtgctg
      241 cgccatcagt ttcggacgcg gatcttcttc ctgattcaga taaataaggc tgctgcgcgt
      301 ctgccggtac agcattttca acaaaccgcc cgacaaatgg ctgaacaaca aattgtgcgc
      361 cgcatccgca atcgtctgat ggaagctgac atcggcttcg ctctgatgtt ccagattgcc
      421 gctttcgcac gcctcctcaa acttttcaag ccaaaaccca atccgcttca aatcggcatc
      481 cgtccggcgt tctgccgcca atgccgccat acagccctcg atgtggcagc tgaaatcaaa
      541 aacatcctgt tcccaattgg aatgcttgcc caaaagctcc tgccaacttt gcaaaaaatc
      601 ctgctgcggc ttgaccgaaa cataataacc gtctccctgc ctcgcttcca aaacctgacg
      661 ggcaaccaaa acattcaatg ccgaccggac cgacgggcgc gaaacgccga actcttccgc
      721 caaaacgcgt tcgggcggaa tcttgccccc ttccgcgtaa accccttccg caatgcgctc
      781 ctccaatacc gacaatacct gatcgctgat tttctgaggc cttaccagtt tcatcactcc
      841 tcctttataa agattccctg cagaaccctt ccgaaatata gtggattaac aaaaatcagg
      901 acaagg
//
LOCUS       DAXHNP010000267          905 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.267, whole genome shotgun sequence.
ACCESSION   DAXHNP010000267 DAXHNP010000000
VERSION     DAXHNP010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.267"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..215
                     /locus_tag="ACFM5C_002119"
     CDS             <1..215
                     /locus_tag="ACFM5C_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069746.1"
                     /translation="DAGDVYCVYNIRLKQYTACQVTRVEEHGGKKTRATLLALDWQGN
                     KPLGAAELADLKPLYKDLKNNIGNIV"
     gene            546..>905
                     /locus_tag="ACFM5C_002120"
     CDS             546..>905
                     /locus_tag="ACFM5C_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein"
                     /protein_id="HFC6069747.1"
                     /translation="MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDG
                     YDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELK
                     AFPCLSSLFLTKWHKNLY"
BASE COUNT          280 a          149 c          212 g          264 t
ORIGIN      
        1 ctgatgccgg agacgtatat tgcgtctata acatcagact gaagcagtac actgcctgcc
       61 aggttacccg agttgaagaa cacggtggca aaaaaacacg tgcgaccctg ctggctttgg
      121 actggcaggg caacaaaccg cttggggcgg cggaactggc ggatttgaaa ccgctttaca
      181 aagacttaaa gaataatatt ggaaatattg tatgaacaaa aaattaaact atatttttat
      241 gttggactgt ttagggttgg tgatattgtt tacttgtata atagctactt ttgaaagaga
      301 ttatggattt aaaattttta ctaattctaa gaggcctgaa ttttattatt ggattggaat
      361 gttttattat ggaattattt cttgctggtt tgattatcaa ttaatttcaa caaaggcgaa
      421 ttcgtataaa agaaaagtta aacaatataa aattttttca gtaatatttt cagttttgat
      481 atttatttct actatagtaa aactttaaat tttggagcaa aaatttatga gcgattcaat
      541 tgaatatgta ttgggaacgc ggtctgcaca tgtataaggc aagtgccgtc gtgccgacgg
      601 gatatgtacg ggttgggaat accgcgccgc tggtcggcga agacacgcaa cggtatgcct
      661 ctttttgggg cgacggctac gacgtgtacc gtcagttgag atggcagcag atacccgaaa
      721 aacagagaaa ggcattcaaa aaagccgcca aaagcaaaaa gaccgtgatg tttgccggac
      781 gggaatacgg catatccaaa cagaatttga gcgatgtttg ggatgatttt gaagacgcga
      841 tggaactgaa ggcgtttccc tgcctgtctt cgctgtttct gaccaaatgg cataaaaatc
      901 tatat
//
LOCUS       DAXHNP010000268          895 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.268, whole genome shotgun sequence.
ACCESSION   DAXHNP010000268 DAXHNP010000000
VERSION     DAXHNP010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.268"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..101)
                     /locus_tag="ACFM5C_002121"
                     /pseudo
     CDS             complement(1..101)
                     /locus_tag="ACFM5C_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
     gene            444..686
                     /locus_tag="ACFM5C_002122"
     CDS             444..686
                     /locus_tag="ACFM5C_002122"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069748.1"
                     /translation="MLELSTYCVSPSAGSVVDFDLKKRGGVGQDVFRGTPDCGGVCLY
                     FAEGFKNRVVGYIGCTVLVCARSGQGAMGKFARDAV"
     gene            complement(706..>895)
                     /locus_tag="ACFM5C_002123"
     CDS             complement(706..>895)
                     /locus_tag="ACFM5C_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069749.1"
                     /translation="TIMRPFDGVKYKDTLTAGFSSPHHHLTADSYLQKRREPDRWYSR
                     IRRAVREAATSRAPSHDE"
BASE COUNT          172 a          178 c          316 g          229 t
ORIGIN      
        1 aaagcccccg ccaaaccggc aacgaccgca gtgaaaaaat aggggaacct gtaagggaag
       61 gggcatcggc tgcggccggt gcttttttgt ttggaaggga aacggcagga aaaagacccg
      121 cgccatatcg gggaatgaac cgacgcaaag gaaatgcggt ttgaatatgc gtccgggcgg
      181 tgttttactg tgtgtgccgt atggcggggc agggtgtctg atttcgtgat gaccgtgttg
      241 gtggaatcga agcctgccgt tccggtaagg gttgcccggg agggcaaggc cggctttgta
      301 tgcccggtta agagggaagg atgagactgt gcatttttga ttttaattgg ctatatgccg
      361 tctgaaaatc ggtttgaagg cggtactttt atgctgcctt tcatacaggg gaatgggaac
      421 gttgcggctg cgcggaaacc gtggtgcttg aactttctac ttactgcgtt tcgccgtcgg
      481 cgggttcggt ggtggatttt gacctgaaaa aaaggggggg tgttgggcaa gatgttttta
      541 ggggaacgcc ggattgcggt ggggtttgcc tttattttgc agaaggcttt aaaaaccgtg
      601 tggtcgggta catcggctgt accgtgcttg tttgtgcaag atcggggcag ggtgcgatgg
      661 gcaagtttgc ccgggatgcc gtctgaagcg ttcagacggc attttttatt cgtcgtggct
      721 tggtgcgcgg gatgtggcgg cttcccggac ggcacggcgg atgcggctgt accatcggtc
      781 gggttctcgc cgcttttgga ggtaactgtc ggcggtcagg tggtggtgcg ggcttgaaaa
      841 accggcggtt agggtgtctt tatatttcac cccgtcaaaa gggcgcatta tagtg
//
LOCUS       DAXHNP010000269          857 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.269, whole genome shotgun sequence.
ACCESSION   DAXHNP010000269 DAXHNP010000000
VERSION     DAXHNP010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.269"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..261)
                     /locus_tag="ACFM5C_002124"
     CDS             complement(<1..261)
                     /locus_tag="ACFM5C_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6069750.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAVLFY
                     RKIRTVINYHLVLAADEVFEGPVEPDESDFGGRRKGRRGRGAA"
     gene            complement(381..839)
                     /locus_tag="ACFM5C_002125"
     CDS             complement(381..839)
                     /locus_tag="ACFM5C_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069751.1"
                     /translation="MPSEHAFGRRFVGGYRSGTSEKGFQAVFGRVVTVENVIRLPEKF
                     GRFSGGLWYWAQQTQVQIRRCAVIVRMPIQPKQTSVFRKWMFDGAKVVRRMEGNLWVF
                     GMVALEKTCFKGQMPSENRFQTAFSVYLKQTGKGSNILQSSYSHKRFIVN"
BASE COUNT          222 a          232 c          162 g          241 t
ORIGIN      
        1 tgccgcaccg cgaccacgtc tgcctttacg ccgtccgccg aaatcgcttt cgtccggctc
       61 gacagggccc tcaaaaacct catcggcagc caagaccaaa tgatagttga taaccgtgcg
      121 gattttgcgg tagaacagta ctgccgaatt gggatggata cccaaaatat cggcggcaga
      181 acgggcggta acttccagta caaaaaaacg gagcagttct ttctgtactt ttttctttaa
      241 tttgcagtgc gttatcttca tatttcgagg gtaacatatc tgctaatcta gtacagcccc
      301 tagtttaaag ctttgtttct taagtccgca gagtatgcca tggttagacc ttcaaagttg
      361 agtattgtac tattttgttt ttaattaact ataaaacgct tgtgtgaata ggaagactgc
      421 agaatattgc tgccttttcc tgtttgcttt aaataaacag aaaatgccgt ctgaaaccga
      481 ttttcagacg gcatttgtcc cttaaaacac gttttttcaa gcgcgaccat accaaacacc
      541 cacaggttgc cttccatcct tcgtacaacc tttgctccat caaacatcca cttcctaaat
      601 actgatgtct gcttaggttg aatcggcatt cgtacgatta cggcacaccg cctaatctgt
      661 acctgcgtct gttgcgccca ataccaaagg ccacctgaaa atctcccaaa cttttcaggt
      721 agccttatca cgttttcgac tgttaccaca cgcccaaaga ccgcctgaaa ccctttttca
      781 gacgttccgc tccgataccc cccaacaaaa cgccgcccga acgcatgttc agacggcatt
      841 ttctttgcgt cgattca
//
LOCUS       DAXHNP010000270          809 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.270, whole genome shotgun sequence.
ACCESSION   DAXHNP010000270 DAXHNP010000000
VERSION     DAXHNP010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.270"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            420..626
                     /locus_tag="ACFM5C_002126"
                     /pseudo
     CDS             420..626
                     /locus_tag="ACFM5C_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311098.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
     gene            641..809
                     /locus_tag="ACFM5C_002127"
                     /pseudo
     CDS             641..809
                     /locus_tag="ACFM5C_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777280.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tonB dependent receptor family protein"
BASE COUNT          220 a          223 c          172 g          194 t
ORIGIN      
        1 atccactata catcaaacat caaattggac tgaccaatca gggcggattc taatgacacg
       61 ccgttcccgc cgtcaacggc atttacctcg caccgccccc gaaacacaag aaaaaactac
      121 accaaactac aatttttgtt tatacaaata tttgttttga caggatttaa acgaaagctc
      181 cgattcaaat ctgccgaacc gcccaaaaat atatagtgga ttaacaaaaa tcaggacaag
      241 gcgacgaagc cgcagacagt acagatagta cggtaaggcg aggcaacgcc gtactggttt
      301 aaatttaatc cattctattg acctgaatat taaagtttcg caaagtaatg caacgttgct
      361 ttaattggtt tgaccactat tgccgacgat tagaaaaata ttttcggaga tgttcaatta
      421 tggaaacttg ggttcaaaac tacacggcaa tcggcggcag cctgtatctg actgccgccg
      481 ccgcactctt acccatcgtc tttttctttg ccgcgctgac cgtcctgaag ctgaaaggct
      541 atcaggcggg gctttatacg ctgctgattg cgcttgccgt tgccgtattc ggcttcggga
      601 tgccggcggg tatggcggtt tcttccctgc cgccgcagcc gcactgaccc aacgccccta
      661 cgccacgctg gatttgaccg cgcattacaa aatcggcaaa tccacccgca ttggtttgga
      721 ctttgaaaac gtgttcaaca aacgctaccg ccctatgccc gacattcacg tttacggcac
      781 gccgcgcagc ctgaccgcaa ccgtcaaac
//
LOCUS       DAXHNP010000271          805 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.271, whole genome shotgun sequence.
ACCESSION   DAXHNP010000271 DAXHNP010000000
VERSION     DAXHNP010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.271"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..743)
                     /locus_tag="ACFM5C_002128"
     CDS             complement(join(<1..524,524..743))
                     /locus_tag="ACFM5C_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242698.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element IS1301 family transposase"
                     /protein_id="HFC6069752.1"
                     /translation="MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGA
                     PWRDIPIELGSWKTAYNRFNRWSKKGLWQKFFFDLRKEIDKEWVFIDGSYVRCHQHAS
                     GARRGFDRAIGQSRGGNTTKIHLCVDSHGNPLDFKVTGGNVHDGQVANDLIEVIQEAQ
                     YFIADKGYDSQEIRDKAIEHGMKAIIPKRKNAKKPNPDFDSYLYKLRHLVENAFARLK
                     QFRSIATRYEKLARNFKSMLYLACSIIHAK"
BASE COUNT          193 a          175 c          160 g          277 t
ORIGIN      
        1 cttagcatga ataatagagc aagccaagta aagcatcgat ttaaaattac gagctaattt
       61 ctcatagcga gtagcaatac tacgaaactg ctttaatcgt gcaaatgcat tctcgactaa
      121 gtggcgtaat ttataaaggt agctatcaaa atcagggtta ggtttcttgg catttttacg
      181 ctttggtata atagctttca taccgtgttc tatcgcttta tctctgattt cttgcgagtc
      241 ataccctttg tcagcgataa aatactgggc ttcttgtatg acttctatca agtcgtttgc
      301 aacttgaccg tcgtgcacgt tacccccagt gactttaaaa tcgagcggat ttccatgcga
      361 gtccacacat aggtgtattt ttgtcgtgtt tccgccacgg ctttgtccaa ttgctctatc
      421 gaaaccacgc cgagctccac ttgcatgttg atgacaccgt acataacttc cgtcgatgaa
      481 tacccattct ttgtcaattt cttttcgtag atcaaaaaaa aattctgcca caagcctttt
      541 ttagaccatc ggttaaagcg gttataagcg gttttccatg accctagctc aataggtatg
      601 tctcgccatg gtgcacctgt tcttagcttc catagtatgg cttccatcac ggtacggtcg
      661 ttcttccatt gatgacagcc gtgcgctttc atggttgttt gtaattgttc ccatatgttg
      721 tcagttattg cggttctcgc cattgtttgt gtttgcctat atttcgttgg aatatagggt
      781 taaaataggg ctcttttggg cttat
//
LOCUS       DAXHNP010000272          800 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.272, whole genome shotgun sequence.
ACCESSION   DAXHNP010000272 DAXHNP010000000
VERSION     DAXHNP010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.272"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            31..201
                     /locus_tag="ACFM5C_002129"
     CDS             31..201
                     /locus_tag="ACFM5C_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HFC6069753.1"
                     /translation="MAQYMCGPCGWIYDEEHGDPEHGIPPGTKFEDIPDDWKCPECGV
                     GKEDFYLLDFVI"
BASE COUNT          235 a          208 c          183 g          174 t
ORIGIN      
        1 atccgctata caaaaaacaa ggaaacacaa atggcgcaat atatgtgcgg cccctgcggc
       61 tggatttacg atgaagaaca cggcgacccc gaacacggca tcccccctgg gacaaagttt
      121 gaagacatcc ccgacgactg gaaatgcccc gaatgcggcg tgggcaaaga agatttctac
      181 ctgttggatt tcgtgatata gcggcagccg cacccttagg gaaaaccccg tcatccggcg
      241 ttccgcctgc ggcggcaggg aacgccgttt tatagtggat taacaaaaat caggacaagg
      301 cgacgaagcc gcagacagta caaatagtac ggaaccgatt cacttgttaa agaatcgttc
      361 tctttgagct aaggcgaggc aacgccgtac tggtttttgt taatccacta tatccgtttg
      421 cgcccgccaa gccgtgttgc acagatgcga cacggctttt ttctttctgt tgtcagaatg
      481 taaattttcg tcaaaaaaca tcaaaaatcc cccccccccc ccgaatttgc gtaaaataaa
      541 gtgtaatccc tttgatcata agggaatgtt gacaattaga tcgattctcc taggctgact
      601 ttcgcaataa atggggttgt caataattgt gtatggtcgt ttgccgtccg gcggccgtca
      661 ttcccgcgaa cgcaggaatc cagcaacaca atgcagcagg actttatcgg aaaaaaccga
      721 aaccccaccg actgtcattc ccgcaaaagc tggaatccaa aaacgcaacg caacaggaat
      781 ttatcggaaa aaacagaacc
//
LOCUS       DAXHNP010000273          753 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.273, whole genome shotgun sequence.
ACCESSION   DAXHNP010000273 DAXHNP010000000
VERSION     DAXHNP010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.273"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..472
                     /gene="mafA"
                     /locus_tag="ACFM5C_002130"
     CDS             <1..472
                     /gene="mafA"
                     /locus_tag="ACFM5C_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6069754.1"
                     /translation="LLANPRDVSFLTNLIQTVFYLRGIEVVPPEYADTDVFVTVDVFG
                     TVRSRTELHLYNAETLKAQTKLEYFAVDRDSRKLLIAPKTAAYESQYQEQYALWMGPY
                     SVGKTVKASDRLMVDFSDITPYGDTTAQNRPDFKQNNGKNPDVGNEVIRRRKGG"
     gene            476..>753
                     /locus_tag="ACFM5C_002131"
     CDS             476..>753
                     /locus_tag="ACFM5C_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248696.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
                     /protein_id="HFC6069755.1"
                     /translation="MKPLRRLTNLLAACAVAAAAFGQPALAADLAQDPFITDNAQRQH
                     YEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLIQQANINGTIG"
BASE COUNT          196 a          284 c          159 g          114 t
ORIGIN      
        1 cctgctcgcc aacccccgcg acgtttcctt cctgaccaac ctcatccaaa ccgtcttcta
       61 cctgcgcggc atcgaagtcg taccgcccga atacgccgac accgacgtat tcgtaaccgt
      121 cgacgtattc ggcaccgtcc gcagccgcac cgaactgcac ctctacaacg ccgaaaccct
      181 taaagcccaa accaagctcg aatatttcgc cgttgaccgc gacagccgga aactgctgat
      241 tgcccctaaa accgccgcct acgaatccca ataccaagaa caatacgccc tctggatggg
      301 accttacagc gtcggcaaaa ccgtcaaagc ctcagaccgc ctgatggtcg atttctccga
      361 catcaccccc tacggtgaca caaccgccca aaaccgtccc gacttcaaac aaaacaacgg
      421 taaaaacccc gatgtcggca acgaagtcat ccgccgccgc aaaggaggat aaaccgtgaa
      481 accgctgcgc agactgacaa acctccttgc cgcctgcgcc gtagcggccg ccgccttcgg
      541 acagcccgcc ctcgcggcgg acttggcgca agacccgttc attaccgata acgcccaacg
      601 gcagcactac gaacccggag gcaaatacca cctcttcggc gacccgcgcg gcagcgtttc
      661 cgaccgcacc ggtcaaatca acgtcatcca agactatacc caccagatgg gcaacctgct
      721 catccaacag gcaaacatca acggcacaat cgg
//
LOCUS       DAXHNP010000274          736 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.274, whole genome shotgun sequence.
ACCESSION   DAXHNP010000274 DAXHNP010000000
VERSION     DAXHNP010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.274"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..90
                     /locus_tag="ACFM5C_002132"
     rRNA            <1..90
                     /locus_tag="ACFM5C_002132"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            187..300
                     /gene="rrf"
                     /locus_tag="ACFM5C_002133"
     rRNA            187..300
                     /gene="rrf"
                     /locus_tag="ACFM5C_002133"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            336..>736
                     /locus_tag="ACFM5C_002134"
     CDS             336..>736
                     /locus_tag="ACFM5C_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFC6069756.1"
                     /translation="MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARC
                     GLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASLQELEALPGIGPAKAKAIAE
                     YRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQA"
BASE COUNT          177 a          167 c          209 g          183 t
ORIGIN      
        1 cgttcgagac caggacgttg ataggtgggg tgtggaagcg cggtaacgcg tgaagctaac
       61 ccatactaat tgctcgtgag gcttgactct atcatttgaa gaacttcaag agataaaagc
      121 ttactgactg attcagtcat taccgaatat attgattaag gctttaccga tttgtaacag
      181 tttaagtttg gcggccatag cgagttggtc ccacgccttc ccatcccgaa caggaccgtg
      241 aaacgactca gcgccgatga tagtgtggtt cttccatgcg aaagtaggtc actgccaaac
      301 acccattcag aaaacccccg attattcggg ggtttttgct ttgcccggaa aaaatgtcgg
      361 ggatggcggg acggcatccg tacggcgtcc ggtcgggttt gcggaggaac ggcttgaaac
      421 tttgggatat tcattttaga atgactcgtt ttatcgtcgc aagatgcggt ttattgtttg
      481 caacccttaa aggaaaaacc atgaagaaaa tgttcgtgct gttctgtatg ctgttctcct
      541 gcgccttctc ccttgcggcg gtaaacatca atgcggcttc gctgcaggag ttggaggcgc
      601 tgccaggcat aggcccggcg aaggcgaagg ccattgcgga ataccgtgcg caaaacggtg
      661 cgttcaagtc tgtagacgat ttgaccaagg taaagggcat cggccctgcg gtgctggcga
      721 agctgaagga tcaggc
//
LOCUS       DAXHNP010000275          709 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.275, whole genome shotgun sequence.
ACCESSION   DAXHNP010000275 DAXHNP010000000
VERSION     DAXHNP010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.275"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(91..642)
                     /locus_tag="ACFM5C_002135"
     CDS             complement(91..642)
                     /locus_tag="ACFM5C_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069757.1"
                     /translation="MKVLNGWSDRKMWRVLSALPIGVVFFDLIYGFVLNILQGLDLQR
                     AVPDSEGVLAVTPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFR
                     MLGLVAVLAFSAPSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLV
                     GRFRLQTASGRAAKAGGAVKAGG"
BASE COUNT          198 a          278 c          136 g           97 t
ORIGIN      
        1 caaagaaacc gccattagca ctacaccccc ccaagctgcg gctgccaaac acatcggctg
       61 cttctcgacg cacccgctga aaaatgcgcc ctatccgccc gccttgaccg caccccctgc
      121 ctttgccgcc ctgcccgatg ccgtctgaag cctgaaccgc cccaccagcc cgatgacgca
      181 cgacaccgcc ggaaagggca tacacaaagc cgtcagcaca taacgcgcat tccccgtatt
      241 gaccacgtcc gcgcccttca gcagcagcgg cagcgcgttc gcccactccc acaccgacgg
      301 cgcactgaac gccaacaccg ccaccagccc caacatccgg aacaccccga tttccaacac
      361 ctgccgccgc cgcaccgaac ggttgagcag aaacacaacc gccaacccga aacagaccac
      421 cgccgccata ccgccgttgg cgacaatctg caaactgttg aatgcaatat cgggcgtaac
      481 cgccaacacg ccttccgaat ccggcacggc acgctgcaaa tccaaaccct gcaagatatt
      541 caacacaaaa ccgtagatca aatcaaaaaa caccacgcct atcggcaaag cactcaaaac
      601 ccgccacatc ttcctgtccg accaaccgtt caaaactttc attttacccg accacgcaag
      661 ccgccgaaca aaaaataagg ggctgtccta gataactagg ataaactcg
//
LOCUS       DAXHNP010000276          697 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.276, whole genome shotgun sequence.
ACCESSION   DAXHNP010000276 DAXHNP010000000
VERSION     DAXHNP010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.276"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..342)
                     /locus_tag="ACFM5C_002136"
     CDS             complement(<1..342)
                     /locus_tag="ACFM5C_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069758.1"
                     /translation="MHTQRKNFSDSISLHDCYCTEIKVEGRNVCFNFEDGFVVPDNNP
                     NNQAGKHLKTDFSRVVLTHKNENAEDDYLFDIFEDIVFLGKRLFTVRKFLDFSELLEM
                     VNTQGYFLEFLY"
     gene            440..>697
                     /locus_tag="ACFM5C_002137"
     CDS             440..>697
                     /locus_tag="ACFM5C_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069759.1"
                     /translation="MSTFFRQTAQAMIAKHIDRFPLLKLEQVIDWQPIEHYLNRQKTR
                     YLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRID"
BASE COUNT          218 a          185 c          113 g          181 t
ORIGIN      
        1 atacagaaac tcaagaaaat aaccttgtgt attgaccatc tcaagcaatt cagaaaaatc
       61 aagaaatttt ctgaccgtaa acaaacgttt ccctaaaaaa acgatgtctt caaaaatatc
      121 gaacaaataa tcatcttcgg cgttttcatt tttatgggtt aaaacaacac gggaaaaatc
      181 tgttttcaga tgcttgcccg cttgattgtt cggattattg tccggaacga caaaaccgtc
      241 ctcaaaatta aagcagacgt tgcgtccttc tacctttatc tctgtgcaat aacaatcatg
      301 tagagaaatg ctatccgaaa aattttttct ttgtgtatgc aaaaaaagtt ttcattcaag
      361 tacccatatc taacacgaga cctttgcaaa attccccaaa atcccctaaa ttcccaccaa
      421 gacatttagg ggattttcca tgagcacctt cttccggcaa accgcacaag ccatgattgc
      481 caaacacatc gaccgtttcc cactattgaa gttggagcag gtgattgatt ggcagccgat
      541 cgaacactac ctgaaccgtc aaaaaacccg ttaccttaga gaccaccgcg gccgtcctgc
      601 ctatcccctg ctgtccatgt tcaaagccgt cctgctcgga caatggcaca gcctctccga
      661 tcccgaactc gaacacagcc tcattacccg catcgac
//
LOCUS       DAXHNP010000277          685 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.277, whole genome shotgun sequence.
ACCESSION   DAXHNP010000277 DAXHNP010000000
VERSION     DAXHNP010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.277"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..264)
                     /locus_tag="ACFM5C_002138"
     CDS             complement(<1..264)
                     /locus_tag="ACFM5C_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T cell/B cell stimulating protein TspB"
                     /protein_id="HFC6069760.1"
                     /translation="MFRILIISFLFLLSAKSFSADLEIKNGKLMYALSEKYNDNGFKA
                     YKVLGEGGGIHTEYNYKFDKSLNLNVLESSTGARSLEKVPVKVT"
     gene            complement(218..508)
                     /locus_tag="ACFM5C_002139"
     CDS             complement(218..508)
                     /locus_tag="ACFM5C_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069761.1"
                     /translation="MNKNERDFFYISNSDLDKLSESYPDRPLSYVFYCYLKETGLLKN
                     FSMDKCHNFFNRINFNESCFEIKFKDDSFFIIGNGKIDVSDSNNFFSVSFEC"
BASE COUNT          258 a          126 c           83 g          218 t
ORIGIN      
        1 agttacttta acggggactt tttcaagaga gcgtgcgcct gttgaacttt ctaatacatt
       61 caaattcaaa cttttatcaa atttgtaatt atattctgta tgaattcctc ctccctcacc
      121 taaaactttg tatgccttaa atccattatc gttatatttt tccgaaagtg catacatcaa
      181 tttcccattt ttaatttcta aatctgctga aaaagattta gcactcaaaa gaaacagaaa
      241 agaaattatt agaatccgaa acatcaattt ttccattgcc aataatgaaa aatgaatcat
      301 ccttgaattt aatttcaaag caagattcat taaaattaat tctattaaaa aaattatgac
      361 atttatccat tgagaaattt ttcaatagac cagtttcttt caaataacaa taaaacacat
      421 aagaaagagg cctatcagga taagattctg acaatttatc taaatcagaa tttgatatat
      481 agaaaaagtc acgttcattt ttattcatgg tttcaagcct caaatgtcta attaaaagcc
      541 tgattttgac accataactt catgcgctca attcttaaac agaaccgccc cgattaatac
      601 gggtacggaa acgccgagat aaaaataaaa atccatcatt tcaaaacctt tttcagcagg
      661 gaaacaaagt aaacggacgc catca
//
LOCUS       DAXHNP010000278          665 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.278, whole genome shotgun sequence.
ACCESSION   DAXHNP010000278 DAXHNP010000000
VERSION     DAXHNP010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.278"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(64..549)
                     /locus_tag="ACFM5C_002140"
     CDS             complement(64..549)
                     /locus_tag="ACFM5C_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HFC6069762.1"
                     /translation="MRFFGIGFLVLLFLEIMSIVWVADWLGGGWTLFLMAATFAAGVL
                     MLRHTGLSGLLLAGAAMRSGGRVSVYQMLWPIRYTVAAVCLMSPGFVSSVLAVLLLLP
                     FKGGAVLQAGGAENFFNMNQSGRKEGFSRDDDIIEGEYTVEEPYGGNRSRNAIEHKKD
                     E"
BASE COUNT          197 a          214 c          119 g          135 t
ORIGIN      
        1 atccactata ttttcaaacc ggaaaaatgc cgtctgaacc ttcagacggc attccattca
       61 catttattcg tcttttttgt gttcgatggc gtttcgggaa cgattgccgc cgtaaggctc
      121 ttcaaccgta tattccccct cgataatatc gtcatcgcgg gaaaagccct cttttctgcc
      181 cgattggttc atgttgaaaa aattttccgc acctcctgcc tgcaacactg cacctccctt
      241 aaacggcagc agcagcaata ccgccaacac cgaggatacg aatcccggac tcatcagaca
      301 caccgccgcc accgtataac ggataggcca caacatctga taaacggata ccctcccgcc
      361 gcttctcatt gccgcacccg ccaataaaag accggacagc cccgtatgcc tgagcatcag
      421 cacaccggcg gcaaaggttg ccgccatcag aaacagcgtc caaccgccgc ccagccaatc
      481 ggcaacccac acaatcgaca taatctccaa aaacagcagc accaaaaaac cgataccgaa
      541 aaatctcatt gaccgtcatc cttatattta agtaaacagc aaaccgcccg aacaagactc
      601 caagcgacct gcctgtaaat gattacaaaa ccatgtgctt caagccgaaa caatgtgaaa
      661 tcacg
//
LOCUS       DAXHNP010000279          634 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.279, whole genome shotgun sequence.
ACCESSION   DAXHNP010000279 DAXHNP010000000
VERSION     DAXHNP010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.279"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          155 a          147 c          181 g          151 t
ORIGIN      
        1 ccgtcattcc cgcgcaggcg ggaatctaga cattcaatgc taaggcaatt tatcggaaat
       61 gactgaaact caagaaactg gattcccact ttcgtgggaa tgacgggatg caggttcgtg
      121 ggaatgacgt ggtgcaggtt cgtaggaatg acgtggtgca ggtttccgtg cggatggatt
      181 cgtcattccc gcgcaggcgg gaatccagac attcaatgct aaggcaattt atcgggaatg
      241 actgaaactc aaaaaactgg attcccactt tcgtgggaat gacgcggtgc aggtttccgt
      301 acggatggat tcgtcattcc cgcgcaggcg ggaatctagg atgcggaatc tcaagaaacc
      361 gttttgcccg ataagtttct gcaccgacag gtctggattc ccgcctgcgc gggaatgacg
      421 attcgggtat ttctgacggt tcgggcattc ccgacaaggt ggattttcaa ggtgttgtat
      481 agggtgtagg aggattcgta aaaggtgagt tatagggtgg gcttcagccc accgattcca
      541 acgattccac caatcctaca ccgttcccat agactcaaat caacacagaa acttatgcgc
      601 cgtcattccc gcgcaggcgg gaatctagga tgcg
//
LOCUS       DAXHNP010000280          599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.280, whole genome shotgun sequence.
ACCESSION   DAXHNP010000280 DAXHNP010000000
VERSION     DAXHNP010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.280"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            172..465
                     /locus_tag="ACFM5C_002141"
     CDS             172..465
                     /locus_tag="ACFM5C_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069763.1"
                     /translation="MKTNDKLNRQIDVLQKQSAAIHNEAYIEMNTLLYRHREVVSVHN
                     RKADYAEKGKERIALFPRGLNGITKLPAAVLLPERPDCFDMKAVWQMFNRIPR"
BASE COUNT          158 a          150 c          160 g          131 t
ORIGIN      
        1 tccattcggc agggaaagcc tgaagaagaa ttttcccgta agatggccgg ctgcctgacc
       61 gacttggaaa actgtttgga aaaatacctc gaacagttcg ggccggtatc ggaaagtatc
      121 gaagcctgta ccgtcaaact gcaggagtaa ccgtcgttct tcaacaggct gatgaaaacc
      181 aacgacaagc tcaataggca gattgacgtg ttgcagaaac agtcggcagc catccacaac
      241 gaagcctata tcgaaatgaa cacgctgctt taccgccacc gcgaagtggt ttccgtccac
      301 aaccgcaagg cggattatgc ggaaaagggc aaagagcgga ttgcgctgtt cccgcgcggc
      361 ttgaacggca tcaccaagct gcctgccgcc gtcctgttgc ccgagcgtcc cgattgtttt
      421 gatatgaagg cagtttggca aatgtttaat agaataccga ggtaggcgta tcggctgccg
      481 gataaaaatg ccgtctgaaa cggaagcgtt cagacggcat tgttgcagtg gaacaaatca
      541 aaatgcaccc cgtcattcct gtctgtacgg tgatagcggc agtgttttcc tgcttcgtt
//
LOCUS       DAXHNP010000281          593 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.281, whole genome shotgun sequence.
ACCESSION   DAXHNP010000281 DAXHNP010000000
VERSION     DAXHNP010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.281"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>593
                     /locus_tag="ACFM5C_002142"
     CDS             <1..>593
                     /locus_tag="ACFM5C_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HFC6069764.1"
                     /translation="AAIGYATGGSGGAVVGANVDWNNRQLHPSEYKLAEQYADIVASR
                     LNISKEEALGRIIRHMQRTVDYATAKADNFRTDDAIISILGANNLPKQDQHYTNPNYN
                     KQYIQNYVRDFNLANKYNYFGKTPTQSRDYKVGVVTDIGKAALNSGIGIFESAANLAT
                     GEIDPNSWAYVHMGRIGYTHPEYGNAWIRISSATLVY"
BASE COUNT          194 a          101 c          135 g          163 t
ORIGIN      
        1 gcggccatcg gctatgcaac tggtggtagt ggtggtgctg tggtgggtgc gaatgtagat
       61 tggaacaata ggcagctgca tccgagtgaa tataaattag cagaacaata tgcagatata
      121 gtggcttctc gtctaaacat ttcaaaagaa gaagcacttg ggcgaattat tcggcatatg
      181 caacgaaccg tagattacgc aacggctaaa gcggataatt tccgtactga tgacgccatt
      241 atttcaattt taggagcaaa caatttaccc aagcaagatc aacattacac taatccgaac
      301 tacaacaaac aatacattca aaattatgtt cgtgatttca atttagccaa taaatacaat
      361 tattttggga aaactcctac tcaatcaagg gattataaag ttggagttgt tacagatatt
      421 ggtaaggctg cattaaatag cggtataggt atatttgaat cggctgcgaa tttagcgaca
      481 ggggagatag atccgaactc atgggcttat gtacacatgg ggcgtatagg ttatacacat
      541 cctgaatatg gaaatgcttg gattcggatt tcaagtgcaa cactagtgta tta
//
LOCUS       DAXHNP010000282          578 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.282, whole genome shotgun sequence.
ACCESSION   DAXHNP010000282 DAXHNP010000000
VERSION     DAXHNP010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.282"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(131..424)
                     /locus_tag="ACFM5C_002143"
     CDS             complement(131..424)
                     /locus_tag="ACFM5C_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HFC6069765.1"
                     /translation="MNIDDFTPSKIANFFADPDTYSNVLEEVSRFIYSLVPDDANPWK
                     GGEDYIGRGISEWGELLEKWYKQDFLPYLEKNGTNFRNLKIGCLNSLNGQESG"
BASE COUNT          165 a          127 c          100 g          186 t
ORIGIN      
        1 ccttggctgc ggtggtcgaa caatgcacct gcaaagcctt tggcggcgac agtttctatg
       61 ccgtcaccgt ccaaatctag ggcaaggggg tcgtaaacgt tatatttgcc tgaacgtttg
      121 agagctaatt tcaaccactc tcttgcccat tcagggaatt caggcagcca atcttcaaat
      181 ttcggaaatt ggtcccattc ttttcaagat aagggagaaa atcttgttta taccattttt
      241 ccagtaactc tccccattca cttatccctc gtccaatata atcttcgccc cctttccaag
      301 ggtttgcatc atcaggaact aaggaatata taaacctaga tacttcttct aatacattgc
      361 tgtatgtatc aggatccgca aaaaagtttg ctatcttact tggtgtaaaa tcatctatat
      421 tcattataga ttcgccaagc ctctcgtttc cataatcctt atttaattca attcatgctg
      481 taaaacagta gaggatttta gcatttttct cgtatatctc gagatacatt tcttaaattt
      541 aaaaaaatgt tatcgaggga tgcaagtaaa gaagcagt
//
LOCUS       DAXHNP010000283          576 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.283, whole genome shotgun sequence.
ACCESSION   DAXHNP010000283 DAXHNP010000000
VERSION     DAXHNP010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.283"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            167..>576
                     /locus_tag="ACFM5C_002144"
     CDS             167..>576
                     /locus_tag="ACFM5C_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6069766.1"
                     /translation="MKTDIQTELTQALLPHEKVWANEEKTILAKNILLDLVEKTDPTI
                     IGLLLNNDELKRHFFVEVNGVLVFKLQDLRFFLDKHSVNNSYTKYANRIGLTDGNRFL
                     KDNSDIVLDFPFKDCVLNGGQSTEEGEEIYFKRS"
BASE COUNT          195 a          113 c          116 g          152 t
ORIGIN      
        1 gcaaaatcac gacacactcg gacacccgcc ccgcttatcg caactttgcg aacgccccgg
       61 aaacagcaaa tacagcaaat aattgatttt attagagttt atttgcaaaa ccatttgccg
      121 ttacacaaga atggcacatt aaaatgactg atgaggattt ataacgatga agacagacat
      181 tcaaaccgaa ttaacccaag ccctactacc acacgaaaaa gtatgggcga acgaagaaaa
      241 aaccatttta gccaaaaaca ttctgttgga tttggtggaa aaaaccgacc cgaccattat
      301 cggtttgtta ttgaataatg atgagttaaa acgccatttc tttgtggaag tgaatggtgt
      361 tttggtgttt aaattgcagg atttacgttt tttcttggac aaacacagcg tcaataattc
      421 ctacacaaaa tacgccaacc gcattggttt gacggacggc aaccgctttt tgaaagacaa
      481 ttcggatatt gtgttggatt ttccgtttaa agattgcgta ttgaatggcg gacaaagcac
      541 cgaagaaggc gaagagattt attttaaacg cagtaa
//
LOCUS       DAXHNP010000284          542 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.284, whole genome shotgun sequence.
ACCESSION   DAXHNP010000284 DAXHNP010000000
VERSION     DAXHNP010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.284"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>542
                     /locus_tag="ACFM5C_002145"
     rRNA            <1..>542
                     /locus_tag="ACFM5C_002145"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          129 a          117 c          177 g          119 t
ORIGIN      
        1 tggtaggcag tttgactggg gcggtctcct cccaaagagt aacggaggag ttcgaaggtt
       61 acctaggtcc ggtcggaaat cggactgata gtgcaatggc aaaaggtagc ttaactgcga
      121 gaccgacaag tcgagcaggt gcgaaagcag gacatagtga tccggtggtt ctgtatggaa
      181 gggccatcgc tcaacggata aaaggtactc cggggataac aggctgattc cgcccaagag
      241 ttcatatcga cggcggagtt tggcacctcg atgtcggctc atcacatcct ggggctgtag
      301 tcggtcccaa gggtatggct gttcgccatt taaagtggta cgtgagctgg gtttaaaacg
      361 tcgtgagaca gtttggtccc tatctgcagt gggcgttgga agtttgacgg gggctgctcc
      421 tagtacgaga ggaccggagt ggacgaacct ctggtgtacc ggttgtaacg ccagttgcat
      481 agccgggtag ctaagttcgg aagagataag cgctgaaagc atctaagcgc gaaactcgcc
      541 tg
//
LOCUS       DAXHNP010000285          535 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.285, whole genome shotgun sequence.
ACCESSION   DAXHNP010000285 DAXHNP010000000
VERSION     DAXHNP010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.285"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(1..181)
                     /locus_tag="ACFM5C_002146"
                     /pseudo
     CDS             complement(1..181)
                     /locus_tag="ACFM5C_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          128 a          110 c          134 g          163 t
ORIGIN      
        1 tgcttgaagc catttgggcg gtaacgacgc cgtttttgac ttcaacgctt ttaacatatt
       61 tgcctttgat tgttgaagaa gatgccacgc cggcagaact gttgtcgccg ggccatatgc
      121 cgtgattcag gtaatactcg gtgacggctg atttttgacc ttcgaccaaa aggatagctt
      181 cgtcattccc gcgcaggcgg gaatccagcc tcgtcggtgc ggaaacttat cgggaaaacg
      241 gtttctttag attttgcgtt ctggattccc gctttcgcgg gaatgacggg attaaagttt
      301 caaaatttat tctaaataac tgaaattcaa cgaactagat tcccactttc gtgggaatga
      361 cgaattttag gttgctgttt ttggttttct gtccttgtgg gaatgatgaa attttaagtt
      421 ttaggaattt atcggaaaaa acagaaaccg ctccgccgtc attcccgcgc aggcgggaat
      481 ccaggtctgt cggtgcagaa acttatcggg aaaacggttt cttgagattt tacgt
//
LOCUS       DAXHNP010000286          528 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.286, whole genome shotgun sequence.
ACCESSION   DAXHNP010000286 DAXHNP010000000
VERSION     DAXHNP010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.286"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            90..>528
                     /locus_tag="ACFM5C_002147"
     CDS             90..>528
                     /locus_tag="ACFM5C_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS30-like element IS1655 family transposase"
                     /protein_id="HFC6069767.1"
                     /translation="MSYTQLTQGERYHIQYLSRHCTVTEIAKQLNRHKSTISREIRRH
                     RTQGQQYSAEKAQRQSQTIKQRKRQPYKLDSQLIQHIDTLIRRKLSPEQVCAYLCKHH
                     QITLHHSTIYRYLRQDKSNGSTLWQHLRICSKPYRKRYGSTWTR"
BASE COUNT          168 a          179 c          105 g           76 t
ORIGIN      
        1 cggcggattc gcatttgaag tgcaactttc cctaacagaa aaaggccagt atgcggtagc
       61 atacggcctt tcctgcaaga aagattgcca tgagctacac gcaactgacc caaggcgaac
      121 gataccacat ccaatacctg tcccgccact gcaccgtcac cgaaatcgcc aaacagctta
      181 accgccacaa aagcaccatc agccgcgaaa tcagacggca ccgcacccaa gggcagcaat
      241 acagcgccga aaaagcccag cggcaaagcc agactatcaa acagcgtaag cgacaaccct
      301 ataagctcga ttcgcagctg attcagcaca tcgacaccct tatccgccgc aaactcagtc
      361 ccgaacaagt atgcgcctac ctgtgcaaac accaccagat cacgctccac cacagcacca
      421 tttaccgcta ccttcgccaa gacaaaagca acggcagcac gttgtggcaa catctcagaa
      481 tatgcagcaa accctaccgc aaacgctacg gcagcacatg gaccagag
//
LOCUS       DAXHNP010000287          516 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.287, whole genome shotgun sequence.
ACCESSION   DAXHNP010000287 DAXHNP010000000
VERSION     DAXHNP010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.287"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          113 a          119 c          145 g          139 t
ORIGIN      
        1 ggcgaaccaa cgctgtactg gtttagattt aattcactat acctgcgtaa tggtatcggg
       61 tactcatcat caacctgcct tgcattcggt tgtgttgtcc ggcaactgtc cggttgtgtc
      121 gatgggttgc cctgccgctc cctgtgctgc gcaacggttg tgtgccttgg gtgggcgcga
      181 gtggcggccg ggcggtttgt tgctatgata cgggagttcc gatatacaag ggtgggcttc
      241 agcccaccaa tcaacgaccg aaaaagaaaa aacggtgggc tgaagcccac tctacgcaat
      301 tacgcaactg ttatcgtggg gatgacggga ttttaggttt ttgtttttct gtttttgcgg
      361 gaaagatggg ttttaggttg cggtcattta tcggaaaagc agaaatcgct ccgccgtcat
      421 tcccgcgaaa gcgggaatct gaacacgtcc gtagggaaac ctatatcccg tcattcccac
      481 gaaagtggga atctagaacc tctgaatttt cagaca
//
LOCUS       DAXHNP010000288          511 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.288, whole genome shotgun sequence.
ACCESSION   DAXHNP010000288 DAXHNP010000000
VERSION     DAXHNP010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.288"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          166 a           96 c           73 g          176 t
ORIGIN      
        1 ttaaaaataa tttactaact tttactactt aggtataaat tccaatactt aactaaactg
       61 agggtaaata tatttatcca agatagaaga gaaacttttt tctctgtttc cgcaagaata
      121 gttacgggtt gtgaaatatg ctctataccc aagcagtaga tattttcatt gttacttacc
      181 gtattgcttc atagaattgg cactctacgc tttcctttaa aaatcgtcaa taacgattat
      241 cattttcttt aaatttattc aaaacaatat ccttatacac atctcaagcc cgctgaaata
      301 aagcaaagtg gtggttcata gatggcaata ccgatttcaa agcagcctgc actttgacaa
      361 cacacgagaa atacgggaag aacagggcat cagcatatat ttcagcccga agccgtttca
      421 ttcgtttaaa aaactgcttt tttcacaatt tacctttaca aagcctatac gtatccttac
      481 aatttgtttt gctgtttttg gtatattttt g
//
LOCUS       DAXHNP010000289          485 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.289, whole genome shotgun sequence.
ACCESSION   DAXHNP010000289 DAXHNP010000000
VERSION     DAXHNP010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.289"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>485
                     /locus_tag="ACFM5C_002148"
     CDS             <1..>485
                     /locus_tag="ACFM5C_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HFC6069768.1"
                     /translation="GAQLIGKGIQADTRNLHIESVQDTETSQSKQQNGNVQVTVGYGF
                     SASGSYSQSKVKADHASVTEQSGIYAGEDGYQIKVGNHTDLKGGIITSGKSAEDKGKN
                     LFQTATLTASDIQNHSRYEGKSFGIGGSFDLNGGWDGTVTDKQGRPTDRISLAAGYGS
                     D"
BASE COUNT          154 a          132 c          127 g           72 t
ORIGIN      
        1 ggtgcgcagc tcatcggcaa aggcatacag gcagatacgc gcaacctgca tatagaaagt
       61 gtacaagata ctgaaacctc tcagagcaaa cagcaaaacg gcaatgtcca agttactgtc
      121 ggttacggat tcagtgcaag cggcagttac agccaaagca aagtcaaagc agaccatgcc
      181 tccgtaaccg agcaaagcgg tatttatgcc ggagaagacg gctatcaaat caaggtcgga
      241 aaccatacag acctcaaggg cggtatcatc acctccggca agagtgccga agacaaagga
      301 aaaaaccttt ttcagacggc cacccttact gccagcgaca ttcaaaacca cagccgctac
      361 gaaggcaaaa gcttcggcat aggcggcagt ttcgacctga acggcggctg ggacggcacg
      421 gttaccgaca aacaaggcag gcctaccgac aggataagcc tggcagccgg ctacggcagc
      481 gacag
//
LOCUS       DAXHNP010000290          474 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.290, whole genome shotgun sequence.
ACCESSION   DAXHNP010000290 DAXHNP010000000
VERSION     DAXHNP010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.290"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>474
                     /locus_tag="ACFM5C_002149"
     CDS             <1..>474
                     /locus_tag="ACFM5C_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069769.1"
                     /translation="TLCRYRNWLAQDDTLSELLELINCQLTEKGLKVEKASAAVIDAT
                     IIQTAGSEQRQAIEVDEEGQVSGQTTLSKDKNARWTKKNSLYKLGYKQHTRTDAEGYI
                     EKLYITPTNAHECTHLSPLLEGLPKGTTVYADKGYDSKENRQHLKEHRLQNGIMRK"
BASE COUNT          155 a          132 c          111 g           76 t
ORIGIN      
        1 accttatgcc gctaccgcaa ctggctggcg caagacgaca ccctgtccga actgttggaa
       61 ctgattaact gccaactgac cgaaaaaggc ttaaaagtag agaaagcatc cgccgccgtc
      121 attgacgcca ccattattca gaccgccggc agcgaacagc gtcaggccat agaagtcgat
      181 gaagagggac aagtcagcgg tcaaaccaca ctgagtaagg acaaaaatgc ccgttggaca
      241 aagaaaaaca gcctctacaa actcggttac aaacaacata cccgtaccga tgcggaaggc
      301 tatatcgaga aactgtacat cactcccacc aatgcccatg agtgcacaca cctgtcgccg
      361 ttgttggaag gactgcccaa aggtacgacc gtctatgccg acaaaggcta cgacagcaag
      421 gaaaaccggc aacatctgaa agaacatcgg ttgcagaacg gcattatgcg caaa
//
LOCUS       DAXHNP010000291          474 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.291, whole genome shotgun sequence.
ACCESSION   DAXHNP010000291 DAXHNP010000000
VERSION     DAXHNP010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.291"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            1..279
                     /locus_tag="ACFM5C_002150"
                     /pseudo
     CDS             1..279
                     /locus_tag="ACFM5C_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227159.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          111 a          146 c          102 g          115 t
ORIGIN      
        1 caagccatga ttgccaaaca catcgaccgc ttcccgctat tgaagttgga ccaggtgatt
       61 gattggcagc cgatcgaaca atacctgaac cgtcaaagaa cccgttacct cagagaccac
      121 cgcggccgtc ctgcctaccc gctgttgtcc atgttcaaag ccgtcctgct cggacaatgg
      181 cacagcctct ccgttcccga actcgaacac agcctcatca cccgcatcga cttcaacctg
      241 ttttgccgtt tcgacgaact gagcatccct gattacagta tagtggatta acaaaaacca
      301 gtacggcgtt gcctcgcctt agctcaaaga gaacgattct ctaaggtgtt gaagcaccaa
      361 gtgaatcggt tccgtactat ttgtactgtc tgcggcttcg tcgccttatc ctgatttttg
      421 ttaatccact ataaagaccg tcgggcatct gcagccgtca ttcccgcgcc ggcg
//
LOCUS       DAXHNP010000292          470 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.292, whole genome shotgun sequence.
ACCESSION   DAXHNP010000292 DAXHNP010000000
VERSION     DAXHNP010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.292"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>470
                     /locus_tag="ACFM5C_002151"
     CDS             <1..>470
                     /locus_tag="ACFM5C_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6069770.1"
                     /translation="AAIIALAVTVVTAGAGVGAALGLNGAAAAAADAAFASLASQASV
                     SLINNKGDVGKTLKELGRSRTVKNLVVAAATAGVSNKLGASSLATWSETPWVNNLNVN
                     LANAGSAALINTAVNGGSLKDNLEANILAALVNTAHGEAASKIKQLDQHYIAHKV"
BASE COUNT          114 a          133 c          135 g           88 t
ORIGIN      
        1 gcagcgatta tcgcgctggc tgttaccgtg gttactgcgg gcgcgggagt cggagccgca
       61 ctaggcttaa acggcgcagc cgcagcagcg gccgatgccg cctttgcctc actcgcttct
      121 caggcttccg tatcgctcat caacaataaa ggcgatgtcg gcaaaaccct gaaggaactg
      181 ggcagaagcc gcacggtaaa aaatctggtt gtagcggcgg caacggcagg cgtatccaac
      241 aaactcggtg cctcttccct tgccacttgg agcgaaaccc cttgggtaaa caacctcaac
      301 gttaacctgg ccaatgcggg cagtgccgcg ctgatcaaca ccgctgttaa cggcggcagc
      361 ctgaaagaca atctggaggc aaatatcctg gcggcattgg tgaataccgc gcatggggag
      421 gctgcgagta agattaagca attggatcag cactatatcg cccacaaagt
//
LOCUS       DAXHNP010000293          446 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.293, whole genome shotgun sequence.
ACCESSION   DAXHNP010000293 DAXHNP010000000
VERSION     DAXHNP010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.293"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(119..430)
                     /gene="rpsJ"
                     /locus_tag="ACFM5C_002152"
     CDS             complement(119..430)
                     /gene="rpsJ"
                     /locus_tag="ACFM5C_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFC6069771.1"
                     /translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
                     KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLPAGVDVEIKV
                     Q"
BASE COUNT          114 a           93 c          106 g          133 t
ORIGIN      
        1 gaaatcccct aaatgtcttg gtgggaattt agaggatttt ggggaatttt gcaaaggtct
       61 cggcataaca taaaaaatcc ccaagcattg attgcttggg gattttcaat agtccgaatt
      121 attggacttt gatttctaca tcaacaccgg ccggcaaatc cagcttcatc agcgcatcgg
      181 tagttttatc ggtccaatcc acgatgtcca tcaggcgcaa gtgggtgcgg atttccaatt
      241 gctcacggga agttttgttc acgtgcggag aacgcaaaat gttgaaacgc tcgattttgg
      301 tcggcaaagg aatcgggcct tttacaactg caccggtacg ttttgcagtt tcaacgattt
      361 cttgtgcaga acggtcaatc agggcgtaat cataagcttt caggcggata cggatttttt
      421 ggtttgccat ttatcaatat ccttca
//
LOCUS       DAXHNP010000294          445 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.294, whole genome shotgun sequence.
ACCESSION   DAXHNP010000294 DAXHNP010000000
VERSION     DAXHNP010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.294"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          159 a           68 c           73 g          145 t
ORIGIN      
        1 tgaaactgat gcagatatag tggattaaca aaaatcagga caaggcgacg aagccgcaga
       61 cagtacaaat agtacggcaa cgctgtactg gtttaaattt aatccactat attttgtaat
      121 agctgccatt atgcctacta ggatatatac cttctatata atccttattt aaataaaaac
      181 ccttataaaa atctgtgtta tctgtcggga ttgaaaaaaa gattttatct ttctcatcag
      241 gtttatattt gctatcaata tcaaaaagag aataaggatt acaatgagtt cgacatacta
      301 ggtaaaaatt tatatcttgg atcatgaaat attcgatatt tatcaggatc gaaagatgct
      361 aaaaattcat caatatcggt actggatatt ttgtcatcac taataaacat cgctagagat
      421 gggcgacttt gattttccat ttgtt
//
LOCUS       DAXHNP010000295          417 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.295, whole genome shotgun sequence.
ACCESSION   DAXHNP010000295 DAXHNP010000000
VERSION     DAXHNP010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.295"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>417
                     /locus_tag="ACFM5C_002153"
     CDS             <1..>417
                     /locus_tag="ACFM5C_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6069772.1"
                     /translation="ANNADDVAADGNDKIDTKHLPSTCRDAASAVCTKTPEYYLNHGT
                     WPGGNSDAGVASASDIKGKYVKSVTVANGVITATMLSSGVNNEIKGKKLSLWAKRQNG
                     SVKWFCGQPVTRTGTATDAAITATDAAITAASDATA"
BASE COUNT          115 a          148 c           99 g           55 t
ORIGIN      
        1 agccaacaac gccgacgacg tcgccgccga cggcaacgac aaaatcgaca ccaagcacct
       61 gccgtcaacc tgccgcgacg cagcatctgc cgtttgcaca aaaacacccg agtattacct
      121 gaatcacggc acatggcccg gcggcaacag tgatgccggc gtggcatccg cctccgacat
      181 taaaggcaaa tatgttaaaa gcgttacagt cgcaaacggc gtcattaccg ccacaatgct
      241 ttcaagcggc gtaaacaacg aaatcaaagg caaaaaactc tccctgtggg ccaagcgtca
      301 aaacggttcg gtaaaatggt tctgcggaca gccggttacg cgcaccggca ccgccaccga
      361 cgccgccatc accgccaccg acgccgccat caccgccgcc agcgacgcca ccgccaa
//
LOCUS       DAXHNP010000296          415 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.296, whole genome shotgun sequence.
ACCESSION   DAXHNP010000296 DAXHNP010000000
VERSION     DAXHNP010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.296"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          104 a           81 c          117 g          113 t
ORIGIN      
        1 gacgggatta gagtttcaaa atttattcta aatagctgaa actcaacgca ctggattccc
       61 gcctgcgcgg gaatgacgaa ttttaggttt ctgattttgg ttttctgttt ttgtaggaat
      121 gatgaaattt tgagttttag gaatttaccg gaaaaaacag aaaccgctcc gccgtcattc
      181 ccgcgcaggc gggaatctag gacgtaaaat ctcaagaaac cgttgtaccc gataagtttc
      241 cgtgccgaca agtccggatt cccgcctgcg cgggaatgac ggttcagttg cgtaggactg
      301 gattgtgaaa aggggcggat tcggtgaaaa cggcggaaat gtgggattga tggaatcggt
      361 gggctgaagc cctccctaca gagctttcag acggtattgt ttgcgttttc gggat
//
LOCUS       DAXHNP010000297          401 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.297, whole genome shotgun sequence.
ACCESSION   DAXHNP010000297 DAXHNP010000000
VERSION     DAXHNP010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.297"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            108..323
                     /gene="rpmE"
                     /locus_tag="ACFM5C_002154"
     CDS             108..323
                     /gene="rpmE"
                     /locus_tag="ACFM5C_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFC6069773.1"
                     /translation="MKQGIHPNYHEVNVTCSCGNKFATKSAMEKENFNIEVCSLCHPF
                     YTGTQKIVDTTGRVDKFNNKFGNLFKR"
BASE COUNT          123 a          104 c           74 g          100 t
ORIGIN      
        1 attttatcga atatcctctt gacgaaacaa cagaaaatag cgagaatgcc gagcttgtct
       61 gtagcatagg tacattccct atgcccgctt ttttgaaagg aaatcaaatg aaacaaggta
      121 ttcacccgaa ctaccacgaa gtcaacgtta cctgctcttg cggcaacaaa ttcgcaacca
      181 aatccgcgat ggaaaaagaa aacttcaata tcgaggtttg ctccctgtgc cacccgttct
      241 ataccggcac ccaaaaaatc gtcgatacca ccggccgcgt ggacaaattc aacaacaaat
      301 tcggcaacct gttcaaacgc tgattgccgc tttgcaagaa ttaagccctg ccatcatttc
      361 gatggcaggg ctttttaata tttggcacac tgacttctta t
//
LOCUS       DAXHNP010000298          388 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.298, whole genome shotgun sequence.
ACCESSION   DAXHNP010000298 DAXHNP010000000
VERSION     DAXHNP010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.298"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..304
                     /locus_tag="ACFM5C_002155"
     CDS             <1..304
                     /locus_tag="ACFM5C_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6069774.1"
                     /translation="RVAYGHVRHSIDSTKKTTNVVTVAGAANTAPTIYYAPETQNAYH
                     ESHSIRRLGLGVIAGVGFDITPKLTLDTGYRYHNWGRLENTRFKTHEVSLGMRYRF"
BASE COUNT           98 a          128 c           80 g           82 t
ORIGIN      
        1 gcgcgtcgcc tacggacacg tcagacacag catcgattcg accaaaaaaa caacaaatgt
       61 tgttaccgtc gccggtgctg ctaacacagc acctacgatt tattatgcac cagagacgca
      121 aaacgcctat cacgaaagcc acagcatccg ccgcttgggt cttggtgtca tcgccggtgt
      181 cggtttcgac atcacgccca agctgaccct ggacaccgga taccgttacc acaactgggg
      241 acgcttggaa aacacccgct tcaaaaccca cgaagtctca ttgggcatgc gctaccgctt
      301 ctgattcccc gataccgatg ccgtctgaac cttcagacgg cattttttac acaattccca
      361 ccgtttccca tcattcccga tacaccgt
//
LOCUS       DAXHNP010000299          372 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.299, whole genome shotgun sequence.
ACCESSION   DAXHNP010000299 DAXHNP010000000
VERSION     DAXHNP010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.299"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(168..>372)
                     /locus_tag="ACFM5C_002156"
     CDS             complement(168..>372)
                     /locus_tag="ACFM5C_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069775.1"
                     /translation="IGGQSTAAIADLAGEMRRLAKKSKMLLKGLWPFLSSTISAFKIN
                     QSLFKHYCKTVQLLNCKHRKKNY"
BASE COUNT          112 a           68 c           76 g          116 t
ORIGIN      
        1 agagatgaaa cagcgtatcg gctccctgcc ggttgaattt tccgaaaaaa cgcgacgtaa
       61 ccagcatcaa catatataag aacagcacaa atagcatcaa tacatcaggc aacgaaaatg
      121 cagaataatg cacttaatgg tgtttggata tctgttgttt tgtgctgtta gtaattcttc
      181 tttctgtgtt tacagtttag cagttgtaca gttttacagt aatgtttaaa caatgactga
      241 tttattttaa atgcagatat tgtagaggat aaaaatggcc aaagtccttt cagtaacatt
      301 tttgattttt tagcgagcct tctcatttcc ccggcgagat cggcaatggc agcggtactt
      361 tggccgccga ta
//
LOCUS       DAXHNP010000300          366 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.300, whole genome shotgun sequence.
ACCESSION   DAXHNP010000300 DAXHNP010000000
VERSION     DAXHNP010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.300"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..>366)
                     /locus_tag="ACFM5C_002157"
     CDS             complement(<1..>366)
                     /locus_tag="ACFM5C_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069776.1"
                     /translation="VKEYQPPVGIFLFVCFEKCLFPDFAIPIRFCAVRCVLARTCSKS
                     DVVPVFEALIRDADFQYIFLSYNNEGLMSVGQVREIFECFGKYNLVQTEYRRFKADKT
                     ENRNHKANSIFEYLHILEKT"
BASE COUNT          123 a           87 c           59 g           97 t
ORIGIN      
        1 gtcttttcta aaatatgcag atattcgaat atcgaatttg ccttatgatt acggttttct
       61 gtcttatctg ccttaaaacg ccggtattcc gtttgaacca aattatattt gccgaaacac
      121 tcaaaaatct cccttacctg cccgacagac atcaagcctt cgttgttgta gctgagaaaa
      181 atatattgaa agtccgcatc cctaatcaaa gcctcaaata ccggaaccac atccgatttt
      241 gagcaagtcc gcgctaaaac acatcgtaca gcgcaaaacc ggatgggaat ggcaaaatcc
      301 ggaaacaaac atttttcaaa gcatacaaac aaaaaaatac caaccggagg ttggtattcc
      361 ttaact
//
LOCUS       DAXHNP010000301          362 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.301, whole genome shotgun sequence.
ACCESSION   DAXHNP010000301 DAXHNP010000000
VERSION     DAXHNP010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.301"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..206
                     /locus_tag="ACFM5C_002158"
     CDS             <1..206
                     /locus_tag="ACFM5C_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6069777.1"
                     /translation="EAQTKRNRYLSKTRYVVEQSFGTLHRKFRYARAAYFGLIKVSAQ
                     SHLKAMCLNLLKAANRLSAPAAA"
BASE COUNT           88 a           77 c          110 g           87 t
ORIGIN      
        1 cggaagcgca aaccaaacgt aaccgatatt tgtcgaagac ccgttatgtg gtcgaacaaa
       61 gcttcggtac gctgcaccgt aaattccgct atgcccgggc agcctatttc ggactgatta
      121 aagtgagtgc gcaaagccat ctgaaggcga tgtgtttgaa cctgttgaaa gccgccaaca
      181 ggctaagtgc gcctgctgcc gcctaaaagg cggctcggat gcctaattat cgggcgtccg
      241 gtgaggatta agggggtatt tgggtagaat taggcggtat ttggggcgaa aacaactgaa
      301 aacctgtgtt tgggtttcgg ctgtcgggag ggaagggaat tttgcaaagg tctcttttcg
      361 tc
//
LOCUS       DAXHNP010000302          362 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.302, whole genome shotgun sequence.
ACCESSION   DAXHNP010000302 DAXHNP010000000
VERSION     DAXHNP010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.302"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           79 a           81 c           97 g          105 t
ORIGIN      
        1 taccgccgaa aacggtatcc ggacggcttg atttgagttt tggtattttt gcccgacggg
       61 gtgaaaaata cagttgctac ggctcgatga atcgtcagaa atacccgaac cgtcattccc
      121 gcgcaggcgg gaatctagac cggtcggtgc ggaaacttat cgggaaaaaa ggtttctccg
      181 tccctgaatc ctggattccc actttcgtgg gaatgacaga atgtaggttc gtgggaatga
      241 cgtggtgcag gtttccgtgc ggatgaattc atcattcccg cgcaggcggg aatctagtct
      301 gttcggtttc agttattttc gataaatgct tgttgctttt catttctaga ttcccacttt
      361 cg
//
LOCUS       DAXHNP010000303          351 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.303, whole genome shotgun sequence.
ACCESSION   DAXHNP010000303 DAXHNP010000000
VERSION     DAXHNP010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.303"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            44..241
                     /locus_tag="ACFM5C_002159"
     CDS             44..241
                     /locus_tag="ACFM5C_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069778.1"
                     /translation="MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAI
                     NAGLEEIGNQYEFVVFGFLKD"
BASE COUNT          107 a           75 c           73 g           96 t
ORIGIN      
        1 ctgaaagtca tcggttttca actcgtgaag aaaggctgat tgaatgcaga aagtctatgt
       61 tgtccagtcc gtatcaacag gggactttct gtatctctct cctgaaacgg gcgacatcgg
      121 acataccaaa ttaatcacca atgccgatta tttctacgac ttcgaagaag cgattaacgc
      181 aggtttggaa gaaatcggca accaatacga atttgtcgta ttcggatttt tgaaagactg
      241 attttcggat gttcggcggt cgtctgaaaa acgctccatc cattaccgcc aaacactttt
      301 tgaaggaaaa tatcatgaaa tttattaaca cctgccgtaa atacggcgca a
//
LOCUS       DAXHNP010000304          332 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.304, whole genome shotgun sequence.
ACCESSION   DAXHNP010000304 DAXHNP010000000
VERSION     DAXHNP010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.304"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           96 a           73 c           71 g           92 t
ORIGIN      
        1 tttttgaatt tcgggcaacg cttgaatctt cattccgcgc aggcggaaat tatcggtgcg
       61 gtacggcaac ttttttcgat atgaaaagac cgtcattcct gtaaaaacaa aaaatcaaaa
      121 acagaaaatt gaaattcgtc attcccgcgc aggcgggaat ctaggacgta aaatctatag
      181 tggattaaca aaaaccagta cagcgttgcc ttgacttagc tcgaagagaa cgattctcta
      241 aggtgctgaa gcaccgagtg agtcggttcc gcactatccg tactgtctgc ggcttcgtcg
      301 ctttctcctg atttttgtta atccactata aa
//
LOCUS       DAXHNP010000305          300 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.305, whole genome shotgun sequence.
ACCESSION   DAXHNP010000305 DAXHNP010000000
VERSION     DAXHNP010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.305"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            27..>300
                     /locus_tag="ACFM5C_002160"
     CDS             27..>300
                     /locus_tag="ACFM5C_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069779.1"
                     /translation="MLIHYIDIAKRNFVIAVSSLSKTKTETNNPKGIAHTIEYLKKHK
                     VALVVTESTGGLEIPAAKAIRRAGIAVIIANPRQTHQFAQSQPLTKT"
BASE COUNT           81 a           99 c           58 g           62 t
ORIGIN      
        1 tgcggctcgc cgccttgtcc tgatttttgt taattcacta tatcgacatc gccaaacgaa
       61 acttcgtcat cgccgtttcg tctttgtcta aaaccaaaac cgaaaccaac aaccccaaag
      121 gtatcgccca tactatcgaa taccttaaaa aacacaaggt cgccctcgtc gtgacggaaa
      181 gtactggcgg tctcgaaatc cccgccgcca aagccatccg ccgagcaggc atagccgtga
      241 ttatcgccaa cccgcgtcag acgcatcagt ttgcccaatc gcagccgctg accaaaaccg
//
LOCUS       DAXHNP010000306          294 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.306, whole genome shotgun sequence.
ACCESSION   DAXHNP010000306 DAXHNP010000000
VERSION     DAXHNP010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.306"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>294
                     /locus_tag="ACFM5C_002161"
     CDS             <1..>294
                     /locus_tag="ACFM5C_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HFC6069780.1"
                     /translation="DEAGQLARTGRTAKETEARIYTGIDTETADQHTGRLKNSFDKDA
                     VAKEINLQREVTKEFGRNAAQAVAAVADKLGNTQSYERYQEARTLLEAELQNTD"
BASE COUNT           98 a           86 c           79 g           31 t
ORIGIN      
        1 gacgaagcgg gacaacttgc ccgaacaggc aggactgcaa aagaaaccga agcgcgtatc
       61 tacaccggca tcgacaccga aactgcggat caacacacag gccgtctgaa aaacagcttc
      121 gacaaagacg cggtcgccaa agagatcaac ctgcaaaggg aagtaacgaa ggagttcggc
      181 agaaacgccg cccaagccgt agcggccgtt gccgacaaac tcggcaatac ccaaagttac
      241 gaacggtatc aggaagcccg aaccctgctg gaggccgaac tgcaaaacac ggac
//
LOCUS       DAXHNP010000307          293 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.307, whole genome shotgun sequence.
ACCESSION   DAXHNP010000307 DAXHNP010000000
VERSION     DAXHNP010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.307"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT          105 a           81 c           51 g           56 t
ORIGIN      
        1 tgttaaacca ctataagaat gcaaacgaaa agcctcagta ttatccgaga caacggcaaa
       61 ctttccatcg tcattcccgc acaagcggga atccaaaaac aaaaagccgc agaaatttaa
      121 cggaagaacc aaaccccgaa aaccggctcc ccgccttcgc ttgaataaca gaacaaagga
      181 atcagtatta tccgagacaa ccgcaaactt tccatcgtca ttcccgcaca agcgggaatc
      241 caaacttgtc cgcacggaaa cttatcggat aaaacggttt cttagattct acg
//
LOCUS       DAXHNP010000308          292 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.308, whole genome shotgun sequence.
ACCESSION   DAXHNP010000308 DAXHNP010000000
VERSION     DAXHNP010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.308"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           72 a           70 c           82 g           68 t
ORIGIN      
        1 ggtgcaggtt tccgtacgga taggttcgtc attcccgcgc aggcgggaat ctagacattc
       61 aatactaagg caatttatcg ggaatgactg aaactcaaaa aactggattc ccactttcgt
      121 gggaatgacg ggatgcaggt tcgtgggaat gacgtggtgc aggtttccgt acggatggat
      181 tcgtcattcc cgcgcaggcg ggaatccaga cctgtccgca cagaaactta tcggataaaa
      241 acagttgctc caaccccgcg tcctagattc ccactttcgt gggaatgacg gg
//
LOCUS       DAXHNP010000309          290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.309, whole genome shotgun sequence.
ACCESSION   DAXHNP010000309 DAXHNP010000000
VERSION     DAXHNP010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.309"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           80 a           79 c           72 g           59 t
ORIGIN      
        1 aatattgccg ccgtcccgcg ttctagattc ccgcctgcgc gggaatgacg attcatcagt
       61 ttcccgaaac gcccgaaaaa ccgaaaccga gcaaaccgga ttcccgcctg cgcgggaatg
      121 acgatttata agtttcccga aacgcccaaa aaaaccgaaa tccgacaggc aggatttttg
      181 ctttcgtggg gatgacggga ttttaagtta cggtcattta tcggaaaagc agaaactgct
      241 ccgccgttat tccagcgaag gcgggaatct gaacacgtcc gcacggaaac
//
LOCUS       DAXHNP010000310          286 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.310, whole genome shotgun sequence.
ACCESSION   DAXHNP010000310 DAXHNP010000000
VERSION     DAXHNP010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.310"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..>286)
                     /locus_tag="ACFM5C_002162"
     CDS             complement(<1..>286)
                     /locus_tag="ACFM5C_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069781.1"
                     /translation="KKDIFYCEQWSYGYKKLHKPFSEKQAEEKHLKGELYTAVIGSAT
                     QPEYVITLREEVGFFSVHFFDKFGRDYLTHQFQKYSNSNYYFLSMAVWRD"
BASE COUNT          101 a           57 c           37 g           91 t
ORIGIN      
        1 taatctctcc atacagccat agaaagaaaa taataattcg aattggaata tttttgaaat
       61 tgatgggtta aataatccct tccaaattta tcgaaaaaat gtaccgaaaa aaaacctact
      121 tcctctcgca aggtaattac atattcaggt tgtgtcgccg aacctattac ggcagtatat
      181 aactcccctt taagatgttt ttcctcagct tgtttctcag aaaaaggctt atgaagtttc
      241 ttataaccat aagaccactg ctcacaataa aaaatatctt tcttca
//
LOCUS       DAXHNP010000311          283 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.311, whole genome shotgun sequence.
ACCESSION   DAXHNP010000311 DAXHNP010000000
VERSION     DAXHNP010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.311"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           97 a           63 c           60 g           63 t
ORIGIN      
        1 tgccgcaacc tcaaatcccg tcattcccgc gcaggcggga atctaggtct gtcggtgcgg
       61 aaacttatcg gataaaacgg tttcttgaga ttttacgttc tggattccca ctttcgtggg
      121 aatgacggga ttaaagtttc aaaatttatt ctaaatagct gaaactcaac gcactagatt
      181 cccgcctgcg cgggaatgac ggcatatttt gacattgaat aaaaaagact aaaaacagaa
      241 aacagccaaa cagaaaacag ccaaacagaa aacagcgaaa cag
//
LOCUS       DAXHNP010000312          275 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.312, whole genome shotgun sequence.
ACCESSION   DAXHNP010000312 DAXHNP010000000
VERSION     DAXHNP010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.312"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           89 a           86 c           40 g           60 t
ORIGIN      
        1 tatcccgtca ttcctacgaa cctacatccc gtcattccct caaaaacaga aaaccaaaat
       61 tagaaaccta aaatcccgtc attcccgcgc aggcgggaat ccaaacttgt ccgcacggaa
      121 acttatcgga taaaacggtt tcttagattc cacgttctag attcccgcct gcgcgggaat
      181 gacgaatcca tccgcacgga aacctatatc ccgtcattct tacgaaccta catcccgtca
      241 ttccctcaaa aacagaaaac caaaattaga aacct
//
LOCUS       DAXHNP010000313          274 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.313, whole genome shotgun sequence.
ACCESSION   DAXHNP010000313 DAXHNP010000000
VERSION     DAXHNP010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.313"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           86 a           74 c           46 g           68 t
ORIGIN      
        1 gatttgagat tgcggcattt atcgggagca acagaatccg ctctgccgtc attcccacga
       61 aagtgggaat ccaggacaca aaatctcaag aaaccgtttt gcccgataag tttccgcacc
      121 gacagaccta gattcccgcc tgcgtgggaa tgacggcgga aagattctat ttttcccgat
      181 aatcacccac aatctcaaat tccttcattc tctcaaaaac aaaatcagaa ccctaaatcc
      241 catcatcccc atctatgtga atataaaaat ttta
//
LOCUS       DAXHNP010000314          254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.314, whole genome shotgun sequence.
ACCESSION   DAXHNP010000314 DAXHNP010000000
VERSION     DAXHNP010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.314"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>254
                     /locus_tag="ACFM5C_002163"
     CDS             <1..>254
                     /locus_tag="ACFM5C_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069782.1"
                     /translation="QLTEKGLKIEKASAAVIDATIIQTAGSKQRQAIEVDEEGQVSGQ
                     TTPSKDKDARWTKKNGLYRLGYKQHTRTDEEGYIKKLHITP"
BASE COUNT           94 a           69 c           56 g           35 t
ORIGIN      
        1 caactgaccg aaaaaggtct aaaaatagag aaagcatccg ccgccgtcat tgacgccacc
       61 attattcaga ccgccggcag caaacagcgc caggccatag aagtcgacga ggaaggacaa
      121 gtcagcggcc aaaccacacc gagtaaagat aaagatgccc gttggacaaa gaaaaacggt
      181 ttatacagac tcggttacaa acaacatacc cgtaccgatg aggaaggcta tatcaagaaa
      241 ctgcacatca cccc
//
LOCUS       DAXHNP010000315          252 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.315, whole genome shotgun sequence.
ACCESSION   DAXHNP010000315 DAXHNP010000000
VERSION     DAXHNP010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.315"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           69 a           62 c           71 g           50 t
ORIGIN      
        1 tgcggacaga cctagattcc cacctgcgtg ggaatgacga ttcagaagtt gcccgaaacc
       61 aaaaaactga agccgaacgg tctggattcc cgctttcgcg ggaatgacgg cgcataagtt
      121 cccgtgcgga caggcctaga ttcccacctg tgtgggaatg acgatgcaga agttgcccga
      181 aactcaaaaa aaacgaaacc gaacgaaccg gattcccgct tttacgggaa tgacgggatt
      241 ttgggttgtg gt
//
LOCUS       DAXHNP010000316          249 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.316, whole genome shotgun sequence.
ACCESSION   DAXHNP010000316 DAXHNP010000000
VERSION     DAXHNP010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.316"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            complement(<1..>249)
                     /locus_tag="ACFM5C_002164"
     CDS             complement(<1..>249)
                     /locus_tag="ACFM5C_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6069783.1"
                     /translation="RRGRGAAGKVVVFGILKRNGRVYTVVVDNAKSDTLMPVIKQKIM
                     PDSIVYTDSLSSYDKLDVSGFIHYRINHSKEFADRQNH"
BASE COUNT           62 a           60 c           58 g           69 t
ORIGIN      
        1 atgtggttct gacggtcagc aaattccttg gaatggttga tgcggtaatg gataaaaccg
       61 cttacgtcca acttgtcgta actgctcagg ctgtcggtat aaacaatgct gtccggcatg
      121 attttctgtt tgataacagg cattaaagta tcggacttgg cattatctac gacaacggta
      181 tagacccgtc cgttacgttt cagaatgccg aagacaacca cttttcctgc cgcaccgcga
      241 ccacgtctg
//
LOCUS       DAXHNP010000317          246 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.317, whole genome shotgun sequence.
ACCESSION   DAXHNP010000317 DAXHNP010000000
VERSION     DAXHNP010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.317"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
BASE COUNT           75 a           52 c           50 g           69 t
ORIGIN      
        1 ccacatcccg tcattctcac gaaagtggga atccagtttt ttgagtttca gtcattttca
       61 ataaattgcc ttagcattga atgtctagat tcccgcctgc gcgggaatga cgggatttga
      121 ggttgcggca tttatcggaa aaaacagaaa accaaaaaca gaaacctaaa attcgtcatt
      181 cccgcgcagg cgggaatcca atgcgttgag tttcagctat ttagaataaa ttttgaaact
      241 ctaatc
//
LOCUS       DAXHNP010000318          245 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M07 240711
            SAMEA1706799-rid23340453.denovo.318, whole genome shotgun sequence.
ACCESSION   DAXHNP010000318 DAXHNP010000000
VERSION     DAXHNP010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706799
            Sequence Read Archive: ERR484220
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378208.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378208.1
            Genome Coverage       :: 182x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 02:58:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,107
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 47 of 118
            Pseudo Genes (incomplete)         :: 80 of 118
            Pseudo Genes (internal stop)      :: 16 of 118
            Pseudo Genes (multiple problems)  :: 22 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706799-rid23340453.denovo.318"
                     /strain="M07 240711"
                     /db_xref="taxon:487"
     gene            <1..>245
                     /locus_tag="ACFM5C_002165"
     CDS             <1..>245
                     /locus_tag="ACFM5C_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6069784.1"
                     /translation="ILSHAVKIDGPVWGKDVRVSAGKNDVSADGSIRSSHSPATNINS
                     DNSLYAIDTGALGGMYAGKITLISTDRDASVRNQGQW"
BASE COUNT           58 a           54 c           70 g           63 t
ORIGIN      
        1 atattgagcc atgcggttaa gattgatggg cctgtgtggg gtaaagatgt gcgtgtgtcg
       61 gcagggaaaa atgatgtctc agctgatggc tctatccggt cttcacactc ccctgctacg
      121 aatataaatt ccgacaactc actgtatgcc atcgatacag gggcattggg cggtatgtat
      181 gccggtaaga tcaccctgat cagcactgat cgtgatgcat ccgtgcgcaa tcaggggcaa
      241 tggtt
//
